BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038758
(354 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
Length = 729
Score = 313 bits (802), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 182/441 (41%), Positives = 245/441 (55%), Gaps = 119/441 (26%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ LG QVHA L+V GV++C FLGS+LLEV+C +WT++M M
Sbjct: 26 LRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEM 85
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y LG YEE + LFYLM+++GVRPDHFV PKV+KACSELK+YRVGKDVYDYM+SI FEGN
Sbjct: 86 YCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGN 145
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+CVK +LD+FIKCGRM+I FEE I+ K
Sbjct: 146 SCVKGSILDMFIKCGRMDIARRFFEE------------------------------IEFK 175
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+ WN M++GY G ++ N+ +M+ ++PN+I+++ ++AC + ++ G+
Sbjct: 176 DVFMWNIMVSGYTSKGEFKKALNVF--RKMVLEGVKPNSITIASAVSACTNLSLLRHGRE 233
Query: 220 IHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVW----------- 256
IHGY ++ + C V + F + D+V W
Sbjct: 234 IHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQ 293
Query: 257 --------------------------------NSIISAFVRSGQVVDALDLLRDVIVANV 284
NSIISA +SG+ V+ALDLLR++ ++NV
Sbjct: 294 YGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNV 353
Query: 285 KPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRK 333
+ NTVT+VS LPAC KLAAL Q GL T +F+ N+LIDMYGRCG+IQKSR+
Sbjct: 354 EVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRR 413
Query: 334 IFVLMPHKNLVSWNVMISVYG 354
IF LMP ++LVSWNVMISVYG
Sbjct: 414 IFDLMPQRDLVSWNVMISVYG 434
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 99/383 (25%), Positives = 166/383 (43%), Gaps = 94/383 (24%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W M+ Y G +++ +N+F M+ +GV+P+ AC+ L R G++++ Y I
Sbjct: 180 WNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCI 239
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ EE+D D LV NSL+D+YAKCR ++V+ K
Sbjct: 240 KV-----------------------------EELDSDLLVGNSLVDYYAKCRSVEVARRK 270
Query: 153 FSKIKQKDLVSWNAMLA--GYALGG------------------FREEVT----------- 181
F IKQ DLVSWNAMLA G+ G F E T
Sbjct: 271 FGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIIS 330
Query: 182 ---------NLLDEM-EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----- 226
N LD + EM ++++ NT+++ L AC+++ ++ GK IH +++R
Sbjct: 331 ACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDT 390
Query: 227 ------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280
I + CG + S +F+ + RD+V WN +IS + G +DA++L +
Sbjct: 391 CNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFR 450
Query: 281 VANVKPNTVTIVSVLPAC------------LKLAALPQGLGTGSFVWNALIDMYGRCGAI 328
+KPN +T ++L AC K+ + + ++D+ R G
Sbjct: 451 TMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQF 510
Query: 329 QKSRKIFVLMPHK-NLVSWNVMI 350
++ + MP + N W ++
Sbjct: 511 NETLEFIEKMPFEPNAAVWGSLL 533
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 30/149 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNV 42
G ++H +I CG++ C F+ + L++++ +W M+ +Y +
Sbjct: 376 GKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGM 435
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY-----DYMISIKFE 97
G+ + VNLF G++P+H + ACS G + +Y + E
Sbjct: 436 HGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVE 495
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEM 126
AC ++DL + G+ T E+M
Sbjct: 496 QYAC----MVDLLSRAGQFNETLEFIEKM 520
>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
Length = 929
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 173/378 (45%), Positives = 222/378 (58%), Gaps = 84/378 (22%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+++ GY E +++F M+ +GV+P+ AC+ L R G++++ Y
Sbjct: 329 SWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYC 388
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + EE+D D LV NSL+D+YAKCR ++V+
Sbjct: 389 IKV-----------------------------EELDSDLLVGNSLVDYYAKCRSVEVARR 419
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM--IQTD---------------- 193
KF IKQ DLVSWNAMLAGYAL G EE LL EM+ I+ D
Sbjct: 420 KFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGD 479
Query: 194 ---------------MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFV 238
M PNT ++SG LAAC QV+ +KLGK IHGYVLR+HI LST G
Sbjct: 480 GKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSA 539
Query: 239 ICS-----------CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
+ S CSVF++LSTRDVVVWNSIISA +SG+ V+ALDLLR++ ++NV+ N
Sbjct: 540 LISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVN 599
Query: 288 TVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFV 336
TVT+VS LPAC KLAAL Q GL T +F+ N+LIDMYGRCG+IQKSR+IF
Sbjct: 600 TVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFD 659
Query: 337 LMPHKNLVSWNVMISVYG 354
LMP ++LVSWNVMISVYG
Sbjct: 660 LMPQRDLVSWNVMISVYG 677
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 159/473 (33%), Positives = 236/473 (49%), Gaps = 124/473 (26%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ LG QVHA L+V GV++C FLGS+LLEV+C +WT++M M
Sbjct: 105 LRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEM 164
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y LG YEE + LFYLM+++GVRPDHFV PKV+KACSELK+YRVGKDVYDYM+SI FEGN
Sbjct: 165 YCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGN 224
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFY-AKCRYLKVSHC----KF 153
+CVK +LD+FIKCGRM+I FEE++ +D + N ++ Y +K + K C K
Sbjct: 225 SCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKL 284
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM-------------------------- 187
S +K D V+WNA+++GYA G EE + EM
Sbjct: 285 SGVK-PDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYD 343
Query: 188 --------EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----------- 228
+M+ ++PN+I+++ ++AC + ++ G+ IHGY ++
Sbjct: 344 FEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNS 403
Query: 229 -IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLR---------D 278
+ C V + F + D+V WN++++ + G +A++LL D
Sbjct: 404 LVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPD 463
Query: 279 VIVAN--------------------------VKPNTVTIVSVLPACLKLAALPQG----- 307
+I N + PNT TI L AC ++ L G
Sbjct: 464 IITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHG 523
Query: 308 --------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
L TG V +ALI MY C +++ + +F + +++V WN +IS
Sbjct: 524 YVLRNHIELSTG--VGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISA 574
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/358 (22%), Positives = 162/358 (45%), Gaps = 51/358 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y + G +EE + L M +G+ PD + ++ D + + + M
Sbjct: 431 SWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRM 490
Query: 92 ISIKFEGN---------ACVKRPLLDL------FIKCGRMEITSGLFEEMDQDFLVNNSL 136
S+ + N AC + L L ++ +E+++G V ++L
Sbjct: 491 HSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTG----------VGSAL 540
Query: 137 IDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP 196
I Y+ C L+V+ FS++ +D+V WN++++ A G +LL EM + ++++
Sbjct: 541 ISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNL--SNVEV 598
Query: 197 NTISLSGVLAACAQVKGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVF 245
NT+++ L AC+++ ++ GK IH +++R I + CG + S +F
Sbjct: 599 NTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIF 658
Query: 246 NQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP 305
+ + RD+V WN +IS + G +DA++L + +KPN +T ++L AC +
Sbjct: 659 DLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSGLIE 718
Query: 306 QG------------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+G + + ++D+ R G ++ + MP N W ++
Sbjct: 719 EGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLL 776
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 99/238 (41%), Gaps = 53/238 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQL---------LEVFCN------------WTSMMGM 39
++LG ++H +++ +EL +GS L LEV C+ W S++
Sbjct: 515 LKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISA 574
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
G ++L M V + ACS+L R GK+++ ++I +
Sbjct: 575 CAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTC 634
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ L+D++ +CG ++ + +F+ M Q+
Sbjct: 635 NFILNSLIDMYGRCGSIQKSRRIFDLM------------------------------PQR 664
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
DLVSWN M++ Y + GF + NL + ++PN I+ + +L+AC+ ++ G
Sbjct: 665 DLVSWNVMISVYGMHGFGMDAVNLFQXFRTM--GLKPNHITFTNLLSACSHSGLIEEG 720
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 99/224 (44%), Gaps = 32/224 (14%)
Query: 159 KDLVSWNAMLAGYALGG--FREEVTN----LLDEMEMIQTDMQPNTISL-SGVLAACAQV 211
+ L + + G++ GG R V N LL M++ D I + + +L C ++
Sbjct: 46 RKLTNARQRITGFSGGGSVHRNGVLNNAAMLLSSMDLTNPD---ECIEIYASILQKCRKL 102
Query: 212 KGVKLGKAIHGYVLRHHIH---------LSTAC--GFVICSCSVFNQLSTRDVVVWNSII 260
++LG +H ++ + + L C G V + +F+++S R+V W +I+
Sbjct: 103 YNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIM 162
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLG 309
+ G + + L ++ V+P+ V AC +L L G
Sbjct: 163 EMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFE 222
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
S V +++DM+ +CG + +R+ F + K++ WN+M+S Y
Sbjct: 223 GNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGY 266
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 30/149 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNV 42
G ++H +I CG++ C F+ + L++++ +W M+ +Y +
Sbjct: 619 GKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGM 678
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY-----DYMISIKFE 97
G+ + VNLF G++P+H + ACS G + +Y + E
Sbjct: 679 HGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVE 738
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEM 126
AC ++DL + G+ T E+M
Sbjct: 739 QYAC----MVDLLSRAGQFNETLEFIEKM 763
>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 972
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 173/378 (45%), Positives = 222/378 (58%), Gaps = 84/378 (22%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+++ GY E +++F M+ +GV+P+ AC+ L R G++++ Y
Sbjct: 329 SWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYC 388
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + EE+D D LV NSL+D+YAKCR ++V+
Sbjct: 389 IKV-----------------------------EELDSDLLVGNSLVDYYAKCRSVEVARR 419
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM--IQTD---------------- 193
KF IKQ DLVSWNAMLAGYAL G EE LL EM+ I+ D
Sbjct: 420 KFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGD 479
Query: 194 ---------------MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFV 238
M PNT ++SG LAAC QV+ +KLGK IHGYVLR+HI LST G
Sbjct: 480 GKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSA 539
Query: 239 ICS-----------CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
+ S CSVF++LSTRDVVVWNSIISA +SG+ V+ALDLLR++ ++NV+ N
Sbjct: 540 LISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVN 599
Query: 288 TVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFV 336
TVT+VS LPAC KLAAL Q GL T +F+ N+LIDMYGRCG+IQKSR+IF
Sbjct: 600 TVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFD 659
Query: 337 LMPHKNLVSWNVMISVYG 354
LMP ++LVSWNVMISVYG
Sbjct: 660 LMPQRDLVSWNVMISVYG 677
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 159/473 (33%), Positives = 236/473 (49%), Gaps = 124/473 (26%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ LG QVHA L+V GV++C FLGS+LLEV+C +WT++M M
Sbjct: 105 LRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEM 164
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y LG YEE + LFYLM+++GVRPDHFV PKV+KACSELK+YRVGKDVYDYM+SI FEGN
Sbjct: 165 YCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGN 224
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFY-AKCRYLKVSHC----KF 153
+CVK +LD+FIKCGRM+I FEE++ +D + N ++ Y +K + K C K
Sbjct: 225 SCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKL 284
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM-------------------------- 187
S +K D V+WNA+++GYA G EE + EM
Sbjct: 285 SGVK-PDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYD 343
Query: 188 --------EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----------- 228
+M+ ++PN+I+++ ++AC + ++ G+ IHGY ++
Sbjct: 344 FEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNS 403
Query: 229 -IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLR---------D 278
+ C V + F + D+V WN++++ + G +A++LL D
Sbjct: 404 LVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPD 463
Query: 279 VIVAN--------------------------VKPNTVTIVSVLPACLKLAALPQG----- 307
+I N + PNT TI L AC ++ L G
Sbjct: 464 IITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHG 523
Query: 308 --------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
L TG V +ALI MY C +++ + +F + +++V WN +IS
Sbjct: 524 YVLRNHIELSTG--VGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISA 574
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/358 (22%), Positives = 162/358 (45%), Gaps = 51/358 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y + G +EE + L M +G+ PD + ++ D + + + M
Sbjct: 431 SWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRM 490
Query: 92 ISIKFEGN---------ACVKRPLLDL------FIKCGRMEITSGLFEEMDQDFLVNNSL 136
S+ + N AC + L L ++ +E+++G V ++L
Sbjct: 491 HSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTG----------VGSAL 540
Query: 137 IDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP 196
I Y+ C L+V+ FS++ +D+V WN++++ A G +LL EM + ++++
Sbjct: 541 ISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNL--SNVEV 598
Query: 197 NTISLSGVLAACAQVKGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVF 245
NT+++ L AC+++ ++ GK IH +++R I + CG + S +F
Sbjct: 599 NTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIF 658
Query: 246 NQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP 305
+ + RD+V WN +IS + G +DA++L + +KPN +T ++L AC +
Sbjct: 659 DLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIE 718
Query: 306 QG------------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+G + + ++D+ R G ++ + MP N W ++
Sbjct: 719 EGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLL 776
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 100/238 (42%), Gaps = 53/238 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQL---------LEVFCN------------WTSMMGM 39
++LG ++H +++ +EL +GS L LEV C+ W S++
Sbjct: 515 LKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISA 574
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
G ++L M V + ACS+L R GK+++ ++I +
Sbjct: 575 CAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTC 634
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ L+D++ +CG ++ + +F+ M Q+
Sbjct: 635 NFILNSLIDMYGRCGSIQKSRRIFDLM------------------------------PQR 664
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
DLVSWN M++ Y + GF + NL + + ++PN I+ + +L+AC+ ++ G
Sbjct: 665 DLVSWNVMISVYGMHGFGMDAVNLFQQFRTM--GLKPNHITFTNLLSACSHSGLIEEG 720
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 99/224 (44%), Gaps = 32/224 (14%)
Query: 159 KDLVSWNAMLAGYALGG--FREEVTN----LLDEMEMIQTDMQPNTISL-SGVLAACAQV 211
+ L + + G++ GG R V N LL M++ D I + + +L C ++
Sbjct: 46 RKLTNARQRITGFSGGGSVHRNGVLNNAAMLLSSMDLTNPD---ECIEIYASILQKCRKL 102
Query: 212 KGVKLGKAIHGYVLRHHIH---------LSTAC--GFVICSCSVFNQLSTRDVVVWNSII 260
++LG +H ++ + + L C G V + +F+++S R+V W +I+
Sbjct: 103 YNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIM 162
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLG 309
+ G + + L ++ V+P+ V AC +L L G
Sbjct: 163 EMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFE 222
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
S V +++DM+ +CG + +R+ F + K++ WN+M+S Y
Sbjct: 223 GNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGY 266
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 30/149 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNV 42
G ++H +I CG++ C F+ + L++++ +W M+ +Y +
Sbjct: 619 GKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGM 678
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY-----DYMISIKFE 97
G+ + VNLF G++P+H + ACS G + +Y + E
Sbjct: 679 HGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVE 738
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEM 126
AC ++DL + G+ T E+M
Sbjct: 739 QYAC----MVDLLSRAGQFNETLEFIEKM 763
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 106/343 (30%), Positives = 186/343 (54%), Gaps = 27/343 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y + + L+ +MI G+ P+ + P + K+C++ K + G+ ++ +++
Sbjct: 34 WNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVL 93
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHC 151
+ +E + V L+ ++ + GR+E +F+ +D + +LI YA ++ +
Sbjct: 94 KLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQE 153
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I KD+VSWNAM++GYA G +E L EM ++T+++P+ ++ VL+ACAQ
Sbjct: 154 MFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEM--MKTNVRPDEGTMVTVLSACAQS 211
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ V+LG+ +H ++ H I L + CG V +C +F LS +DVV WN++I
Sbjct: 212 RSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLI 271
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------- 307
+ +AL L ++++ + PN VTIVS+LPAC L A+ G
Sbjct: 272 GGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKD 331
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ + +LIDMY +CG I+ + ++F M HK+L SWN MI
Sbjct: 332 VTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMI 374
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 143/335 (42%), Gaps = 61/335 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G Y+E + LF M+ VRPD V AC++ + +G+ V+ ++
Sbjct: 165 SWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWI 224
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F N + N+LID Y+KC ++ +
Sbjct: 225 DDHGFGSN------------------------------LKIVNALIDLYSKCGQVETACG 254
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + KD+VSWN ++ GY +E LL EM+++ PN +++ +L ACA +
Sbjct: 255 LFEGLSCKDVVSWNTLIGGYTHMNLYKEA--LLLFQEMLRSGESPNDVTIVSILPACAHL 312
Query: 212 KGVKLGKAIHGYV------------LRHH-IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ +G+ IH Y+ LR I + CG + + VFN + + + WN+
Sbjct: 313 GAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNA 372
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV---- 314
+I F G+ DL + ++P+ +T V +L AC L LG F
Sbjct: 373 MIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKL--DLGRHIFKSMTQ 430
Query: 315 ----------WNALIDMYGRCGAIQKSRKIFVLMP 339
+ +ID+ G G ++++++ MP
Sbjct: 431 DYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMP 465
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 125/254 (49%), Gaps = 55/254 (21%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+ I++ + + WN ML GYAL + V+ L + MI + PN+ + +L +CA+ K
Sbjct: 23 FATIQEPNQLIWNTMLRGYALSS--DPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSK 80
Query: 213 GVKLGKAIHGYVLRH------HIHLS---------------------------------- 232
+ G+ IHG+VL+ ++H S
Sbjct: 81 AFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALIT 140
Query: 233 --TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
+ G + + +F+++ +DVV WN++IS + +G +AL+L ++++ NV+P+ T
Sbjct: 141 GYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGT 200
Query: 291 IVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+V+VL AC + ++ G G+ + NALID+Y +CG ++ + +F +
Sbjct: 201 MVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLS 260
Query: 340 HKNLVSWNVMISVY 353
K++VSWN +I Y
Sbjct: 261 CKDVVSWNTLIGGY 274
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 11/123 (8%)
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
SVF + + ++WN+++ + S V AL L +I + PN+ T +L +C K
Sbjct: 21 SVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSK 80
Query: 303 ALPQG---------LGTGS--FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
A +G LG +V +LI MY + G ++ + K+F H+++VS+ +I+
Sbjct: 81 AFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALIT 140
Query: 352 VYG 354
Y
Sbjct: 141 GYA 143
>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
Length = 886
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 108/346 (31%), Positives = 176/346 (50%), Gaps = 54/346 (15%)
Query: 31 CNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W +++ Y G E+ + LF M G +PD V +C+ L D GK+++
Sbjct: 365 ASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIH-- 422
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
ME+ F D V+++L+D Y KC L+++
Sbjct: 423 -------------------------MELVRSGFA---LDGFVSSALVDMYGKCGCLEMAK 454
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F +I++K++VSWN+M+AGY+L G + L M+ + ++P +LS +L AC++
Sbjct: 455 EVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMD--EEGIRPTLTTLSSILMACSR 512
Query: 211 VKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
++LGK IHGY++R+ I L CG + + +VF + +VV WN +
Sbjct: 513 SVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVM 572
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------ 313
IS +V+ G ++AL + D+ A VKP+ +T SVLPAC +LA L +G +F
Sbjct: 573 ISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKL 632
Query: 314 -----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V AL+DMY +CGA+ ++ IF +P ++ VSW MI+ YG
Sbjct: 633 EINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYG 678
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 98/384 (25%), Positives = 175/384 (45%), Gaps = 78/384 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
+E G ++H L+ G L F+ S L++++ +W SM+
Sbjct: 415 LERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAG 474
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y++ G + + LF M ++G+RP + ACS + ++GK ++ Y+I + E
Sbjct: 475 YSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEA- 533
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D VN+SLID Y KC + + F + +
Sbjct: 534 -----------------------------DIFVNSSLIDLYFKCGNIGSAENVFQNMPKT 564
Query: 160 DLVSWNAMLAGYA-LGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
++VSWN M++GY +G + E + D M + ++P+ I+ + VL AC+Q+ ++ GK
Sbjct: 565 NVVSWNVMISGYVKVGSYLEALVIFTD---MRKAGVKPDAITFTSVLPACSQLAVLEKGK 621
Query: 219 AIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
IH +++ + ++ CG V + +FNQL RD V W S+I+A+ G
Sbjct: 622 EIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHG 681
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------LGTGSFV--W 315
Q +AL L + ++ KP+ VT +++L AC + +G G V +
Sbjct: 682 QAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHY 741
Query: 316 NALIDMYGRCGAIQKSRKIFVLMP 339
+ LID+ GR G ++++ +I P
Sbjct: 742 SCLIDLLGRVGRLREAYEILQRTP 765
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 149/315 (47%), Gaps = 54/315 (17%)
Query: 61 VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITS 120
++PD F P V KACS L GK V+ ++I F + V + ++ KC E
Sbjct: 294 LKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAI 353
Query: 121 GLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEV 180
LF+EM ++D+ SWN +++ Y G E+
Sbjct: 354 KLFDEM------------------------------PERDVASWNNVISCYYQDGQPEKA 383
Query: 181 TNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH-----------GYVLRHHI 229
L +EM++ + +P++++L+ V+++CA++ ++ GK IH G+V +
Sbjct: 384 LELFEEMKV--SGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALV 441
Query: 230 HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289
+ CG + + VF Q+ ++VV WNS+I+ + G ++L R + ++P
Sbjct: 442 DMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLT 501
Query: 290 TIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLM 338
T+ S+L AC + L G + FV ++LID+Y +CG I + +F M
Sbjct: 502 TLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNM 561
Query: 339 PHKNLVSWNVMISVY 353
P N+VSWNVMIS Y
Sbjct: 562 PKTNVVSWNVMISGY 576
>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Vitis vinifera]
Length = 694
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 108/345 (31%), Positives = 176/345 (51%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ Y G E+ + LF M G +PD V +C+ L D GK+++
Sbjct: 174 SWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIH--- 230
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
ME+ F D V+++L+D Y KC L+++
Sbjct: 231 ------------------------MELVRSGFA---LDGFVSSALVDMYGKCGCLEMAKE 263
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I++K++VSWN+M+AGY+L G + L M+ + ++P +LS +L AC++
Sbjct: 264 VFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMD--EEGIRPTLTTLSSILMACSRS 321
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++LGK IHGY++R+ I L CG + + +VF + +VV WN +I
Sbjct: 322 VNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMI 381
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------- 313
S +V+ G ++AL + D+ A VKP+ +T SVLPAC +LA L +G +F
Sbjct: 382 SGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLE 441
Query: 314 ----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V AL+DMY +CGA+ ++ IF +P ++ VSW MI+ YG
Sbjct: 442 INEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYG 486
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 98/384 (25%), Positives = 175/384 (45%), Gaps = 78/384 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
+E G ++H L+ G L F+ S L++++ +W SM+
Sbjct: 223 LERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAG 282
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y++ G + + LF M ++G+RP + ACS + ++GK ++ Y+I + E
Sbjct: 283 YSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEA- 341
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D VN+SLID Y KC + + F + +
Sbjct: 342 -----------------------------DIFVNSSLIDLYFKCGNIGSAENVFQNMPKT 372
Query: 160 DLVSWNAMLAGY-ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
++VSWN M++GY +G + E + D M + ++P+ I+ + VL AC+Q+ ++ GK
Sbjct: 373 NVVSWNVMISGYVKVGSYLEALVIFTD---MRKAGVKPDAITFTSVLPACSQLAVLEKGK 429
Query: 219 AIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
IH +++ + ++ CG V + +FNQL RD V W S+I+A+ G
Sbjct: 430 EIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHG 489
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------LGTGSFV--W 315
Q +AL L + ++ KP+ VT +++L AC + +G G V +
Sbjct: 490 QAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHY 549
Query: 316 NALIDMYGRCGAIQKSRKIFVLMP 339
+ LID+ GR G ++++ +I P
Sbjct: 550 SCLIDLLGRVGRLREAYEILQRTP 573
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 149/315 (47%), Gaps = 54/315 (17%)
Query: 61 VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITS 120
++PD F P V KACS L GK V+ ++I F + V + ++ KC E
Sbjct: 102 LKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAI 161
Query: 121 GLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEV 180
LF+EM ++D+ SWN +++ Y G E+
Sbjct: 162 KLFDEM------------------------------PERDVASWNNVISCYYQDGQPEKA 191
Query: 181 TNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH-----------GYVLRHHI 229
L +EM++ + +P++++L+ V+++CA++ ++ GK IH G+V +
Sbjct: 192 LELFEEMKV--SGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALV 249
Query: 230 HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289
+ CG + + VF Q+ ++VV WNS+I+ + G ++L R + ++P
Sbjct: 250 DMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLT 309
Query: 290 TIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLM 338
T+ S+L AC + L G + FV ++LID+Y +CG I + +F M
Sbjct: 310 TLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNM 369
Query: 339 PHKNLVSWNVMISVY 353
P N+VSWNVMIS Y
Sbjct: 370 PKTNVVSWNVMISGY 384
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/343 (30%), Positives = 167/343 (48%), Gaps = 54/343 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W + Y G++ + + L+Y M G+ PD V V KAC D + G+ V++ +I
Sbjct: 88 WKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDII 147
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ FE D +V +L Y KC L+ +
Sbjct: 148 ARGFES------------------------------DVIVGTALASMYTKCGSLENARQV 177
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ ++D+VSWNA++AGY+ G E L EM++ ++PN+ +L V+ CA +
Sbjct: 178 FDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQV--NGIKPNSSTLVSVMPVCAHLL 235
Query: 213 GVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ GK IH Y +R I ++ CG V + +F ++ RDV WN+II
Sbjct: 236 ALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIG 295
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGT 310
+ + Q +AL + V +KPN++T+VSVLPAC L AL Q G +
Sbjct: 296 GYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFES 355
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V NAL++MY +CG + + K+F MP KN+V+WN +IS Y
Sbjct: 356 NDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGY 398
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 107/397 (26%), Positives = 182/397 (45%), Gaps = 75/397 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++ G +VH +I G E +G+ L ++ +W +++
Sbjct: 136 LQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAG 195
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y+ G E + LF M G++P+ V C+ L GK ++ Y I
Sbjct: 196 YSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIR------ 249
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
SG+ + D LV N L++ YAKC + +H F ++ +
Sbjct: 250 --------------------SGI----ESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIR 285
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+ SWNA++ GY+L E + M++ ++PN+I++ VL ACA + ++ G+
Sbjct: 286 DVASWNAIIGGYSLNSQHHEALAFFNRMQV--RGIKPNSITMVSVLPACAHLFALEQGQQ 343
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IHGY +R +++ CG V + +F ++ ++VV WN+IIS + + G
Sbjct: 344 IHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGH 403
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNA 317
+AL L ++ +KP++ IVSVLPAC AL Q G + V
Sbjct: 404 PHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTG 463
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L+D+Y +CG + ++K+F MP +++VSW MI YG
Sbjct: 464 LVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYG 500
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/397 (23%), Positives = 170/397 (42%), Gaps = 81/397 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q+H + I G+E + + L+ ++ +W +++G
Sbjct: 237 LEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGG 296
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y++ + E + F M +G++P+ V AC+ L G+ ++ Y I FE N
Sbjct: 297 YSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESN 356
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+V N+L++ YAKC + ++ F ++ +K
Sbjct: 357 D------------------------------VVGNALVNMYAKCGNVNSAYKLFERMPKK 386
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
++V+WNA+++GY+ G E L EM+ ++P++ ++ VL ACA ++ GK
Sbjct: 387 NVVAWNAIISGYSQHGHPHEALALFIEMQA--QGIKPDSFAIVSVLPACAHFLALEQGKQ 444
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IHGY +R + + CG V + +F ++ +DVV W ++I A+ G
Sbjct: 445 IHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGH 504
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL----------GTGSFV--WN 316
DAL L + K + + ++L AC + QGL G + +
Sbjct: 505 GEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYA 564
Query: 317 ALIDMYGRCGAIQKSRKI---FVLMPHKNLVSWNVMI 350
L+D+ GR G + ++ I L P N+ W ++
Sbjct: 565 CLVDLLGRAGHLDEANGIIKNMSLEPDANV--WGALL 599
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 111/218 (50%), Gaps = 24/218 (11%)
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+ + V W + GY GF + L +M+ +T + P+ + V+ AC ++ G
Sbjct: 82 RNNAVVWKETIIGYVKNGFWNKALRLYYQMQ--RTGINPDKLVFLSVIKACGSQSDLQAG 139
Query: 218 KAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
+ +H ++ + T CG + + VF+++ RDVV WN+II+ + ++
Sbjct: 140 RKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQN 199
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVW 315
GQ +AL L ++ V +KPN+ T+VSV+P C L AL Q G+ + V
Sbjct: 200 GQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVV 259
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
N L++MY +CG + + K+F MP +++ SWN +I Y
Sbjct: 260 NGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGY 297
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 181/324 (55%), Gaps = 27/324 (8%)
Query: 52 LFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111
L+ MI G+ P+ + P + K+C++ K +R G+ ++ +++ + ++ + V L+ +++
Sbjct: 75 LYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYV 134
Query: 112 KCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAG 170
+ GR+E +F++ +D + +LI YA Y+ + F +I KD+VSWNAM++G
Sbjct: 135 QNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISG 194
Query: 171 YALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-- 228
YA G +E L EM ++T+++P+ ++ V++ACAQ ++LG+ +H ++ H
Sbjct: 195 YAETGNNKEALELFKEM--MKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFG 252
Query: 229 ---------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
I L CG V +C +F LS +DV+ WN++I + +AL L +++
Sbjct: 253 SNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEM 312
Query: 280 IVANVKPNTVTIVSVLPACLKLAALP-------------QGLGTGSFVWNALIDMYGRCG 326
+ + PN VT++S+LPAC L A+ +G+ S +LIDMY +CG
Sbjct: 313 LRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCG 372
Query: 327 AIQKSRKIFVLMPHKNLVSWNVMI 350
I+ ++++F + +++L SWN MI
Sbjct: 373 DIEAAQQVFDSILNRSLSSWNAMI 396
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 126/254 (49%), Gaps = 55/254 (21%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I++ +L+ WN M G+AL + V+ L + MI + PN + +L +CA+ K
Sbjct: 45 FETIQEPNLLIWNTMFRGHALSS--DPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSK 102
Query: 213 GVKLGKAIHGYVLR------HHIHLS---------------------------------- 232
+ G+ IHG+VL+ ++H S
Sbjct: 103 AFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALIT 162
Query: 233 --TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
+ G++ + +F+++ +DVV WN++IS + +G +AL+L ++++ NV+P+ T
Sbjct: 163 GYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDEST 222
Query: 291 IVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+VSV+ AC + A++ G G+ + NALID+Y +CG ++ + +F +
Sbjct: 223 MVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLS 282
Query: 340 HKNLVSWNVMISVY 353
+K+++SWN +I Y
Sbjct: 283 YKDVISWNTLIGGY 296
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 125/289 (43%), Gaps = 45/289 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G +E + LF M+ VRPD V AC++ +G+ V+ ++
Sbjct: 187 SWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWI 246
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F N + N+LID Y KC ++ +
Sbjct: 247 DDHGFGSN------------------------------LKIVNALIDLYIKCGEVETACG 276
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + KD++SWN ++ GY +E LL EM+++ PN +++ +L ACA +
Sbjct: 277 LFEGLSYKDVISWNTLIGGYTHMNLYKEA--LLLFQEMLRSGESPNDVTMLSILPACAHL 334
Query: 212 KGVKLGKAIHGYVLRH---------H----IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+++G+ IH Y+ + H I + CG + + VF+ + R + WN+
Sbjct: 335 GAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNA 394
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
+I F G+ A D+ + ++P+ +T V +L AC L G
Sbjct: 395 MIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLG 443
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 90/192 (46%), Gaps = 36/192 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++G Y + Y+E + LF M+ G P+ + AC+ L +G+ ++ Y
Sbjct: 288 SWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVY- 346
Query: 92 ISIKFEG--NACVKR-PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKV 148
I+ + +G NA R L+D++ KCG +E +F D ++N S
Sbjct: 347 INKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVF-----DSILNRS------------- 388
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
L SWNAM+ G+A+ G ++ M + +++P+ I+ G+L+AC
Sbjct: 389 ------------LSSWNAMIFGFAMHGRANAAFDIFSRMR--KNEIEPDDITFVGLLSAC 434
Query: 209 AQVKGVKLGKAI 220
+ + LG+ I
Sbjct: 435 SHSGMLDLGRHI 446
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 11/123 (8%)
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
SVF + ++++WN++ S V AL L +I + PN T +L +C K
Sbjct: 43 SVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSK 102
Query: 303 ALPQG-------LGTGS----FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
A +G L G +V +LI MY + G ++ +RK+F H+++VS+ +I+
Sbjct: 103 AFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALIT 162
Query: 352 VYG 354
Y
Sbjct: 163 GYA 165
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 181/324 (55%), Gaps = 27/324 (8%)
Query: 52 LFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111
L+ MI G+ P+ + P + K+C++ K +R G+ ++ +++ + ++ + V L+ +++
Sbjct: 90 LYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYV 149
Query: 112 KCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAG 170
+ GR+E +F++ +D + +LI YA Y+ + F +I KD+VSWNAM++G
Sbjct: 150 QNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISG 209
Query: 171 YALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-- 228
YA G +E L EM ++T+++P+ ++ V++ACAQ ++LG+ +H ++ H
Sbjct: 210 YAETGNNKEALELFKEM--MKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFG 267
Query: 229 ---------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
I L CG V +C +F LS +DV+ WN++I + +AL L +++
Sbjct: 268 SNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEM 327
Query: 280 IVANVKPNTVTIVSVLPACLKLAALP-------------QGLGTGSFVWNALIDMYGRCG 326
+ + PN VT++S+LPAC L A+ +G+ S +LIDMY +CG
Sbjct: 328 LRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCG 387
Query: 327 AIQKSRKIFVLMPHKNLVSWNVMI 350
I+ ++++F + +++L SWN MI
Sbjct: 388 DIEAAQQVFDSILNRSLSSWNAMI 411
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 128/289 (44%), Gaps = 45/289 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G +E + LF M+ VRPD V AC++ +G+ V+ ++
Sbjct: 202 SWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWI 261
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F N + L+DL+IKCG +E GLFE
Sbjct: 262 DDHGFGSNLKIVNALIDLYIKCGEVETACGLFE--------------------------- 294
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+ KD++SWN ++ GY +E LL EM+++ PN +++ +L ACA +
Sbjct: 295 ---GLSYKDVISWNTLIGGYTHMNLYKEA--LLLFQEMLRSGESPNDVTMLSILPACAHL 349
Query: 212 KGVKLGKAIHGYVLRH---------H----IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+++G+ IH Y+ + H I + CG + + VF+ + R + WN+
Sbjct: 350 GAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNA 409
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
+I F G+ A D+ + ++P+ +T V +L AC L G
Sbjct: 410 MIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLG 458
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 126/254 (49%), Gaps = 55/254 (21%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I++ +L+ WN M G+AL + V+ L + MI + PN + +L +CA+ K
Sbjct: 60 FETIQEPNLLIWNTMFRGHALSS--DPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSK 117
Query: 213 GVKLGKAIHGYVLR------HHIHLS---------------------------------- 232
+ G+ IHG+VL+ ++H S
Sbjct: 118 AFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALIT 177
Query: 233 --TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
+ G++ + +F+++ +DVV WN++IS + +G +AL+L ++++ NV+P+ T
Sbjct: 178 GYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDEST 237
Query: 291 IVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+VSV+ AC + A++ G G+ + NALID+Y +CG ++ + +F +
Sbjct: 238 MVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLS 297
Query: 340 HKNLVSWNVMISVY 353
+K+++SWN +I Y
Sbjct: 298 YKDVISWNTLIGGY 311
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 90/192 (46%), Gaps = 36/192 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++G Y + Y+E + LF M+ G P+ + AC+ L +G+ ++ Y
Sbjct: 303 SWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVY- 361
Query: 92 ISIKFEG--NACVKR-PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKV 148
I+ + +G NA R L+D++ KCG +E +F D ++N S
Sbjct: 362 INKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVF-----DSILNRS------------- 403
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
L SWNAM+ G+A+ G ++ M + +++P+ I+ G+L+AC
Sbjct: 404 ------------LSSWNAMIFGFAMHGRANAAFDIFSRMR--KNEIEPDDITFVGLLSAC 449
Query: 209 AQVKGVKLGKAI 220
+ + LG+ I
Sbjct: 450 SHSGMLDLGRHI 461
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 11/123 (8%)
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
SVF + ++++WN++ S V AL L +I + PN T +L +C K
Sbjct: 58 SVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSK 117
Query: 303 ALPQG-------LGTGS----FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
A +G L G +V +LI MY + G ++ +RK+F H+++VS+ +I+
Sbjct: 118 AFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALIT 177
Query: 352 VYG 354
Y
Sbjct: 178 GYA 180
>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 187/343 (54%), Gaps = 27/343 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M + + + L+ MI G+ P+ + P + K+C++ K ++ G+ ++ +++
Sbjct: 59 WNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVL 118
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHC 151
+ + + V L+ ++++ GR+E +F+E +D + +LI YA Y++ +
Sbjct: 119 KLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQK 178
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I KD+VSWNAM++GYA G +E L +M ++T+++P+ ++ V++ACAQ
Sbjct: 179 MFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDM--MKTNVRPDESTMVTVVSACAQS 236
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++LG+ +H ++ H I L + CG + +C +F L +DV+ WN++I
Sbjct: 237 GSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLI 296
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-------------QG 307
+ +AL L ++++ + PN VT++S+LPAC L A+ +G
Sbjct: 297 GGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKG 356
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ S + +LIDMY +CG I+ + ++F + HK+L SWN MI
Sbjct: 357 VANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMI 399
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 127/254 (50%), Gaps = 55/254 (21%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I++ +L+ WN M G+AL + V+ L + MI + PN+ + +L +CA+ K
Sbjct: 48 FETIQEPNLLIWNTMFRGHALSS--DPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSK 105
Query: 213 GVKLGKAIHGYVLRH------HIHLS---------------------------------- 232
K G+ IHG+VL+ ++H S
Sbjct: 106 AFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIK 165
Query: 233 --TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
+ G++ + +F+++ +DVV WN++IS + +G +AL+L +D++ NV+P+ T
Sbjct: 166 GYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDEST 225
Query: 291 IVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+V+V+ AC + ++ G G+ + NALID+Y +CG ++ + +F +P
Sbjct: 226 MVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLP 285
Query: 340 HKNLVSWNVMISVY 353
+K+++SWN +I Y
Sbjct: 286 YKDVISWNTLIGGY 299
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 124/280 (44%), Gaps = 45/280 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G Y+E + LF M+ VRPD V AC++ +G+ V+ ++
Sbjct: 190 SWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWI 249
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F N + N+LID Y+KC L+ +
Sbjct: 250 DDHGFGSN------------------------------LKIVNALIDLYSKCGELETACG 279
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + KD++SWN ++ GY +E LL EM+++ PN +++ +L ACA +
Sbjct: 280 LFEGLPYKDVISWNTLIGGYTHMNLYKEA--LLLFQEMLRSGETPNDVTMLSILPACAHL 337
Query: 212 KGVKLGKAIHGYV------------LRHH-IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ +G+ IH Y+ LR I + CG + + VFN + + + WN+
Sbjct: 338 GAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNA 397
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+I F G+ + D+ + ++P+ +T V +L AC
Sbjct: 398 MIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSAC 437
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 30/189 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++G Y + Y+E + LF M+ G P+ + AC+ L +G+ ++ Y
Sbjct: 291 SWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVY- 349
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + +G A + SLID YAKC ++ +H
Sbjct: 350 IDKRLKGVANASS---------------------------LRTSLIDMYAKCGDIEAAHQ 382
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ I K L SWNAM+ G+A+ G + ++ M + ++P+ I+ G+L+AC+
Sbjct: 383 VFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMR--KNGIEPDDITFVGLLSACSHS 440
Query: 212 KGVKLGKAI 220
+ LG+ I
Sbjct: 441 GMLDLGRHI 449
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 11/123 (8%)
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
SVF + ++++WN++ S V AL L +I + PN+ T +L +C K
Sbjct: 46 SVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSK 105
Query: 303 ALPQG-------LGTGS----FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
A +G L G +V +LI MY + G ++ + K+F PH+++VS+ +I
Sbjct: 106 AFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIK 165
Query: 352 VYG 354
Y
Sbjct: 166 GYA 168
>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
Length = 526
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 183/324 (56%), Gaps = 27/324 (8%)
Query: 52 LFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111
L+ MI G+ P+ + P + K+C++ K +R G+ ++ +++ + ++ + V L+ +++
Sbjct: 75 LYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYV 134
Query: 112 KCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAG 170
+ GR+E +F++ +D + +LI YA Y++ + F +I KD+VSWNAM++G
Sbjct: 135 QNGRLEDARKVFDQSSHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISG 194
Query: 171 YALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-- 228
YA G +E L +M ++T+++P+ ++ V++ACAQ ++LG+ +H ++ H
Sbjct: 195 YAETGNYKEALELFKDM--MKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFG 252
Query: 229 ---------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
I L + CG V +C +F LS +DV+ WN++I + +AL L +++
Sbjct: 253 SNLKIVNALIDLYSKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEM 312
Query: 280 IVANVKPNTVTIVSVLPACLKLAALP-------------QGLGTGSFVWNALIDMYGRCG 326
+ + PN VT++S+LPAC L A+ +G+ S + +LIDMY +CG
Sbjct: 313 LRSGESPNDVTMLSILPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCG 372
Query: 327 AIQKSRKIFVLMPHKNLVSWNVMI 350
I+ ++++F M ++L SWN MI
Sbjct: 373 DIEAAKQVFDSMLTRSLSSWNAMI 396
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/335 (24%), Positives = 143/335 (42%), Gaps = 61/335 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G Y+E + LF M+ VRPD V AC++ +G+ V+ ++
Sbjct: 187 SWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWI 246
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F N + N+LID Y+KC ++ +
Sbjct: 247 DDHGFGSN------------------------------LKIVNALIDLYSKCGEVETACG 276
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + KD++SWN ++ GY +E LL EM+++ PN +++ +L ACA +
Sbjct: 277 LFEGLSYKDVISWNTLIGGYTHMNLYKEA--LLLFQEMLRSGESPNDVTMLSILPACAHL 334
Query: 212 KGVKLGKAIHGYV-------------LRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ +G+ IH Y+ L I + CG + + VF+ + TR + WN+
Sbjct: 335 GAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNA 394
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV---- 314
+I F G+ A DL + + P+ +T V +L AC L LG F
Sbjct: 395 MIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGML--DLGRHIFRSMSQ 452
Query: 315 ----------WNALIDMYGRCGAIQKSRKIFVLMP 339
+ +ID+ G CG ++++++ MP
Sbjct: 453 DYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMP 487
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 125/254 (49%), Gaps = 55/254 (21%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I++ +L+ WN M G+AL + V+ L + MI + PN + +L +CA+ K
Sbjct: 45 FETIQEPNLLIWNTMFRGHALSS--DPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSK 102
Query: 213 GVKLGKAIHGYVLRH------HIHLS---------------------------------- 232
+ G+ IHG+VL+ ++H S
Sbjct: 103 AFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALIK 162
Query: 233 --TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
+ G++ + +F+++ +DVV WN++IS + +G +AL+L +D++ NV+P+ T
Sbjct: 163 GYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDEST 222
Query: 291 IVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+V+V+ AC + ++ G G+ + NALID+Y +CG ++ + +F +
Sbjct: 223 MVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGEVETACGLFEGLS 282
Query: 340 HKNLVSWNVMISVY 353
+K+++SWN +I Y
Sbjct: 283 YKDVISWNTLIGGY 296
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 11/123 (8%)
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
SVF + ++++WN++ S V AL L +I + PN T +L +C K
Sbjct: 43 SVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSK 102
Query: 303 ALPQG-------LGTGS----FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
A +G L G +V +LI MY + G ++ +RK+F H+++VS+ +I
Sbjct: 103 AFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALIK 162
Query: 352 VYG 354
Y
Sbjct: 163 GYA 165
>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/343 (28%), Positives = 187/343 (54%), Gaps = 27/343 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M + + + L+ MI G+ P+ + P + K+C++LK + G+ ++ +++
Sbjct: 71 WNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVL 130
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFE-EMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ +E + V L+ +++K GR + +F+ +D + +LI YA Y++ +
Sbjct: 131 KLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQK 190
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I KD+VSWNA+++GYA G +E +L EM ++T+++P+ ++ V++ACAQ
Sbjct: 191 MFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEM--MKTNVKPDESTMVTVVSACAQS 248
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++LG+ +H ++ H I L + CG V +C +F LS +DV+ WN++I
Sbjct: 249 GSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMI 308
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-------------QG 307
+ +AL L ++++ + PN VT++S+LPAC +L A+ +G
Sbjct: 309 GGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKG 368
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ S + +LIDMY +CG I+ + ++F M H+ L + N MI
Sbjct: 369 VTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMI 411
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 128/254 (50%), Gaps = 55/254 (21%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I++ +L+ WN M G+AL + V+ + + MI + PN+ + +L +CA++K
Sbjct: 60 FETIQEPNLLIWNTMFRGHALSS--DPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLK 117
Query: 213 GVKLGKAIHGYVLRH------HIHLS---------------------------------- 232
K G+ IHG+VL+ ++H S
Sbjct: 118 VSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALIT 177
Query: 233 --TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
+ G++ + +F+++ +DVV WN+IIS + +G +ALDL ++++ NVKP+ T
Sbjct: 178 GYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDEST 237
Query: 291 IVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+V+V+ AC + ++ GLG+ + NALID+Y +CG ++ + +F +
Sbjct: 238 MVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLS 297
Query: 340 HKNLVSWNVMISVY 353
+K+++SWN MI Y
Sbjct: 298 NKDVISWNTMIGGY 311
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/369 (21%), Positives = 143/369 (38%), Gaps = 97/369 (26%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF--------------------------------- 30
G Q+H H++ G EL ++ + L+ ++
Sbjct: 122 GQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYAS 181
Query: 31 -------------------CNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKV 71
+W +++ Y G +E ++LF M+ V+PD V
Sbjct: 182 RGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTV 241
Query: 72 YKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFL 131
AC++ ++G+ V+ ++ N + L+DL+ KCG +E GLF+
Sbjct: 242 VSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQ------- 294
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
+ KD++SWN M+ GY +E LL EM++
Sbjct: 295 -----------------------GLSNKDVISWNTMIGGYTHLNLYKEA--LLLFQEMLR 329
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV------------LRHH-IHLSTACGFV 238
+ PN +++ +L ACAQ+ + G+ IH Y+ LR I + CG +
Sbjct: 330 SGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDI 389
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ VFN + R + N++I F G+ A D+ + ++P+ +T V +L AC
Sbjct: 390 EAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSAC 449
Query: 299 LKLAALPQG 307
L G
Sbjct: 450 SHSGMLDLG 458
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 32/190 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+G Y L Y+E + LF M+ G P+ + AC++L G+ ++ Y+
Sbjct: 303 SWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYI 362
Query: 92 IS-IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
IK NA R SLID YAKC ++ +H
Sbjct: 363 DKRIKGVTNASSLR-----------------------------TSLIDMYAKCGDIEAAH 393
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F+ + + L + NAM+ G+A+ G ++ M + ++P+ I+ G+L+AC+
Sbjct: 394 QVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMR--KNGIEPDDITFVGLLSACSH 451
Query: 211 VKGVKLGKAI 220
+ LG+ I
Sbjct: 452 SGMLDLGRRI 461
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 29/183 (15%)
Query: 197 NTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----LSTACGFVICS---------C 242
N SLS +L C ++ +++ IH +++ +H LS F I S
Sbjct: 2 NHPSLS-LLHNCKTLQSLRI---IHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAI 57
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
SVF + ++++WN++ S V A+ L +I + PN+ T +L +C KL
Sbjct: 58 SVFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLK 117
Query: 303 ALPQG-------LGTGS----FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+G L G +V +LI MY + G + + K+F H+++VS+ +I+
Sbjct: 118 VSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALIT 177
Query: 352 VYG 354
Y
Sbjct: 178 GYA 180
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 101/343 (29%), Positives = 185/343 (53%), Gaps = 27/343 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M + + + L+ MI G+ P+ + P + KAC++ K +R G+ ++ +++
Sbjct: 71 WNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVL 130
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHC 151
+ + + V L+ +++K GR E +F++ +D + +LI YA Y+ +
Sbjct: 131 KLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQK 190
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I KD+VSWNA+++GYA G +E L EM ++T+++P+ ++ VL+ACAQ
Sbjct: 191 MFDEIPVKDVVSWNALISGYAETGNYKEALELFKEM--MKTNVKPDESTMVTVLSACAQS 248
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++LG+ +H ++ H I L CG V + +F LS +DV+ WN++I
Sbjct: 249 ASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLI 308
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-------------QG 307
+ +AL L ++++ + PN VT++S+LPAC L A+ +G
Sbjct: 309 GGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKG 368
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ S + +LIDMY +CG I+ ++++F M +++L SWN MI
Sbjct: 369 VSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMI 411
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 127/254 (50%), Gaps = 55/254 (21%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I++ +L+ WN M G+AL + V+ L + MI + PN+ + +L ACA+ K
Sbjct: 60 FDSIQEPNLLIWNTMFRGHALSS--DPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSK 117
Query: 213 GVKLGKAIHGYVLRH------HIHLS---------------------------------- 232
+ G+ IHG+VL+ ++H S
Sbjct: 118 AFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIK 177
Query: 233 --TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
+ G++ + +F+++ +DVV WN++IS + +G +AL+L ++++ NVKP+ T
Sbjct: 178 GYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDEST 237
Query: 291 IVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+V+VL AC + A++ G G+ + NALID+Y +CG ++ + +F +
Sbjct: 238 MVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLS 297
Query: 340 HKNLVSWNVMISVY 353
+K+++SWN +I Y
Sbjct: 298 YKDVISWNTLIGGY 311
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 123/280 (43%), Gaps = 45/280 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ Y G Y+E + LF M+ V+PD V AC++ +G+ V+ ++
Sbjct: 202 SWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWI 261
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F N + N+LID Y KC ++ +
Sbjct: 262 DDHGFGSN------------------------------LKIVNALIDLYIKCGEVETASG 291
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + KD++SWN ++ GY +E LL EM+++ PN +++ +L ACA +
Sbjct: 292 LFEGLSYKDVISWNTLIGGYTHMNLYKEA--LLLFQEMLRSGESPNEVTMLSILPACAHL 349
Query: 212 KGVKLGKAIHGYV------------LRHH-IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ +G+ IH Y+ LR I + CG + + VF+ + R + WN+
Sbjct: 350 GAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNA 409
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+I F G+ A D+ + ++P+ +T V +L AC
Sbjct: 410 MIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSAC 449
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 30/189 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++G Y + Y+E + LF M+ G P+ + AC+ L +G+ ++ Y
Sbjct: 303 SWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVY- 361
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + +G V P S L SLID YAKC ++ +
Sbjct: 362 IDKRLKG---VSNP--------------SSL----------RTSLIDMYAKCGDIEAAQQ 394
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + + L SWNAM+ G+A+ G ++ M + ++P+ I+ G+L+AC+
Sbjct: 395 VFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMR--KDGIEPDDITFVGLLSACSHS 452
Query: 212 KGVKLGKAI 220
+ LG+ I
Sbjct: 453 GMLDLGRHI 461
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 11/123 (8%)
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
SVF+ + ++++WN++ S V AL L +I + PN+ T +L AC K
Sbjct: 58 SVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSK 117
Query: 303 ALPQG-------LGTGS----FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
A +G L G +V +LI MY + G + +RK+F H+++VS+ +I
Sbjct: 118 AFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIK 177
Query: 352 VYG 354
Y
Sbjct: 178 GYA 180
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 188/343 (54%), Gaps = 27/343 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M + + + L+ MI G+ P+ + P V K+C++ K ++ G+ ++ +++
Sbjct: 102 WNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVL 161
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHC 151
+ + + V L+ ++++ GR+E +F++ +D + +LI YA Y++ +
Sbjct: 162 KLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQK 221
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I KD+VSWNAM++GYA G +E L +M ++T+++P+ ++ V++ACAQ
Sbjct: 222 LFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDM--MKTNVRPDESTMVTVVSACAQS 279
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++LG+ +H ++ H I L + CG + +C +F +L +DV+ WN++I
Sbjct: 280 GSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLI 339
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-------------QG 307
+ +AL L ++++ + PN VT++S+LPAC L A+ +G
Sbjct: 340 GGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKG 399
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ S + +LIDMY +CG I+ + ++F + HK+L SWN MI
Sbjct: 400 VTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMI 442
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 127/254 (50%), Gaps = 55/254 (21%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I++ +L+ WN M G+AL + V+ L + MI + PN+ + VL +CA+ K
Sbjct: 91 FKTIQEPNLLIWNTMFRGHALSS--DPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSK 148
Query: 213 GVKLGKAIHGYVLRH------HIHLS---------------------------------- 232
K G+ IHG+VL+ ++H S
Sbjct: 149 AFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIK 208
Query: 233 --TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
+ G++ + +F+++ +DVV WN++IS + +G +AL+L +D++ NV+P+ T
Sbjct: 209 GYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDEST 268
Query: 291 IVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+V+V+ AC + ++ G G+ + NALID+Y +CG ++ + +F +P
Sbjct: 269 MVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLP 328
Query: 340 HKNLVSWNVMISVY 353
+K+++SWN +I Y
Sbjct: 329 YKDVISWNTLIGGY 342
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 125/280 (44%), Gaps = 45/280 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G Y+E + LF M+ VRPD V AC++ +G+ V+ ++
Sbjct: 233 SWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWI 292
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F N + N+LID Y+KC L+ +
Sbjct: 293 DDHGFGSN------------------------------LKIVNALIDLYSKCGELETACG 322
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ KD++SWN ++ GY +E LL EM+++ PN +++ +L ACA +
Sbjct: 323 LFERLPYKDVISWNTLIGGYTHMNLYKEA--LLLFQEMLRSGETPNDVTMLSILPACAHL 380
Query: 212 KGVKLGKAIHGYV------------LRHH-IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ +G+ IH Y+ LR I + CG + + VFN + + + WN+
Sbjct: 381 GAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNA 440
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+I F G+ + DL + ++P+ +T V +L AC
Sbjct: 441 MIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSAC 480
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 34/191 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++G Y + Y+E + LF M+ G P+ + AC+ L +G+ ++ Y
Sbjct: 334 SWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVY- 392
Query: 92 ISIKFEG--NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
I + +G NA R SLID YAKC ++ +
Sbjct: 393 IDKRLKGVTNASSLR-----------------------------TSLIDMYAKCGDIEAA 423
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
H F+ I K L SWNAM+ G+A+ G + +L M I +QP+ I+ G+L+AC+
Sbjct: 424 HQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKI--GIQPDDITFVGLLSACS 481
Query: 210 QVKGVKLGKAI 220
+ LG+ I
Sbjct: 482 HSGMLDLGRHI 492
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 11/123 (8%)
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
SVF + ++++WN++ S V AL L +I + PN+ T VL +C K
Sbjct: 89 SVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSK 148
Query: 303 ALPQG-------LGTGS----FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
A +G L G +V +LI MY + G ++ + K+F PH+++VS+ +I
Sbjct: 149 AFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIK 208
Query: 352 VYG 354
Y
Sbjct: 209 GYA 211
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 186/343 (54%), Gaps = 27/343 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M + + + L+ MI G+ P+ + P + K+C++ K ++ G+ ++ +++
Sbjct: 102 WNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVL 161
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHC 151
+ ++ + V L+ ++++ GR+E +F+ +D + +LI YA Y++ +
Sbjct: 162 KLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQK 221
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I KD+VSWNAM++GYA G +E L EM ++T+++P+ ++ V++ACAQ
Sbjct: 222 LFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEM--MKTNIRPDESTMVTVVSACAQS 279
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++LG+ +H ++ H + L + CG + +C +F L +DV+ WN++I
Sbjct: 280 GSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLI 339
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------- 307
+ +AL L ++++ + +PN VT++S+LPAC L A+ G
Sbjct: 340 GGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKS 399
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
S + +LIDMY +CG I+ + ++F + HK+L SWN MI
Sbjct: 400 ATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMI 442
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 128/289 (44%), Gaps = 45/289 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G Y+E + LF M+ +RPD V AC++ +G+ V+ ++
Sbjct: 233 SWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWI 292
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F N + NSL+D Y+KC L+ +
Sbjct: 293 DDHGFGSN------------------------------LKIVNSLMDLYSKCGELETACG 322
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + KD++SWN ++ GY +E LL EM+++ +PN +++ +L ACA +
Sbjct: 323 LFEGLLYKDVISWNTLIGGYTHMNLYKEA--LLLFQEMLRSGERPNDVTMLSILPACAHL 380
Query: 212 KGVKLGKAIHGYV------------LRHH-IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ +G+ IH Y+ LR I + CG + + VFN + + + WN+
Sbjct: 381 GAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNA 440
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
+I F G+ A D+ + ++P+ +T V +L AC + L G
Sbjct: 441 MIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLG 489
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 125/254 (49%), Gaps = 55/254 (21%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I++ +L+ WN M G+AL + V+ L + MI + PN+ + +L +CA+ K
Sbjct: 91 FETIQEPNLLIWNTMFRGHALSS--DPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSK 148
Query: 213 GVKLGKAIHGYVLRH------HIHLS---------------------------------- 232
K G+ IHG+VL+ +H S
Sbjct: 149 AFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIK 208
Query: 233 --TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
+ G++ + +F+++ +DVV WN++IS + +G +AL+L ++++ N++P+ T
Sbjct: 209 GYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDEST 268
Query: 291 IVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+V+V+ AC + ++ G G+ + N+L+D+Y +CG ++ + +F +
Sbjct: 269 MVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLL 328
Query: 340 HKNLVSWNVMISVY 353
+K+++SWN +I Y
Sbjct: 329 YKDVISWNTLIGGY 342
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 92/203 (45%), Gaps = 32/203 (15%)
Query: 19 CAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL 78
C L + +W +++G Y + Y+E + LF M+ G RP+ + AC+ L
Sbjct: 321 CGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHL 380
Query: 79 KDYRVGKDVYDYMIS-IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLI 137
+G+ ++ Y+ +K NA R SLI
Sbjct: 381 GAIDIGRWIHVYIDKRLKSATNASSLR-----------------------------TSLI 411
Query: 138 DFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN 197
D YAKC ++ +H F+ I K L SWNAM+ G+A+ G + ++ M I ++P+
Sbjct: 412 DMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKI--GIEPD 469
Query: 198 TISLSGVLAACAQVKGVKLGKAI 220
I+ G+L+AC++ + LG+ I
Sbjct: 470 DITFVGLLSACSRSGMLDLGRHI 492
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 11/123 (8%)
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
SVF + ++++WN++ S V AL L +I + PN+ T +L +C K
Sbjct: 89 SVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSK 148
Query: 303 ALPQG-------LGTGS----FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
A +G L G FV +LI +Y + G ++ +RK+F PH+++VS+ +I
Sbjct: 149 AFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIK 208
Query: 352 VYG 354
Y
Sbjct: 209 GYA 211
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/327 (31%), Positives = 174/327 (53%), Gaps = 28/327 (8%)
Query: 50 VNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDL 109
+ ++ M+ G P+ + P + K+C++ K + G+ ++ ++ + E + L+ +
Sbjct: 68 LEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISM 127
Query: 110 FIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAML 168
+ + GR+E +F+ Q +V+ +LI YA ++ + F I ++D+VSWNAM+
Sbjct: 128 YARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMI 187
Query: 169 AGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH 228
GY EE L EM ++T+++P+ +L VL+ACAQ ++LG+ IH V HH
Sbjct: 188 TGYVENCGYEEALELFKEM--MRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHH 245
Query: 229 ------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL 276
I L + CG V + +F LS +DVV WN++I + +AL L
Sbjct: 246 GFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLF 305
Query: 277 RDVIVANVKPNTVTIVSVLPACLKLAALP-------------QGLGTGSFVWNALIDMYG 323
++++ + PN VT++SVLPAC L A+ +G+ GS + +LIDMY
Sbjct: 306 QEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYA 365
Query: 324 RCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+CG I+ + ++F M HK+L SWN MI
Sbjct: 366 KCGDIEAAHQVFNSMMHKSLSSWNAMI 392
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/333 (24%), Positives = 142/333 (42%), Gaps = 56/333 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y YEE + LF M+ VRPD V AC++ +G++++
Sbjct: 182 SWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIH--- 238
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
L+D G + N+ I Y+KC ++++
Sbjct: 239 -------------TLVDDHHGFG-------------SSLKIVNAFIGLYSKCGDVEIASG 272
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + KD+VSWN ++ GY +E LL EM+++ PN +++ VL ACA +
Sbjct: 273 LFEGLSCKDVVSWNTLIGGYTHMNLYKEA--LLLFQEMLRSGESPNDVTMLSVLPACAHL 330
Query: 212 KGVKLGKAIHGYV------------LRHH-IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ +G+ IH Y+ LR I + CG + + VFN + + + WN+
Sbjct: 331 GAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNA 390
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV---- 314
+I F G+ A DL + ++P+ +T+V +L AC L G V
Sbjct: 391 MIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDY 450
Query: 315 --------WNALIDMYGRCGAIQKSRKIFVLMP 339
+ +ID+ G G +++ +I +MP
Sbjct: 451 NITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMP 483
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 115/255 (45%), Gaps = 56/255 (21%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ +L+ WN ML G L + V+ L + M+ PN + +L +CA+ K
Sbjct: 40 FETXQEPNLLIWNTMLRG--LASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSK 97
Query: 213 GVKLGKAIHGYVLR------HHIHLS---------------------------------- 232
+ G+ IH V++ + H S
Sbjct: 98 TFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALIT 157
Query: 233 --TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
+ G V + VF+ ++ RDVV WN++I+ +V + +AL+L ++++ NV+P+ T
Sbjct: 158 GYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGT 217
Query: 291 IVSVLPACLKLAALP------------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLM 338
+VSVL AC + ++ G G+ + NA I +Y +CG ++ + +F +
Sbjct: 218 LVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGL 277
Query: 339 PHKNLVSWNVMISVY 353
K++VSWN +I Y
Sbjct: 278 SCKDVVSWNTLIGGY 292
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 11/123 (8%)
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
SVF ++++WN+++ S +V L++ ++ PN T +L +C K
Sbjct: 38 SVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSK 97
Query: 303 ALPQG---------LG--TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+G LG + +LI MY R G ++ +RK+F +++VS +I+
Sbjct: 98 TFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALIT 157
Query: 352 VYG 354
Y
Sbjct: 158 GYA 160
>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 111/431 (25%), Positives = 195/431 (45%), Gaps = 79/431 (18%)
Query: 1 MELGIQVHAHLIVCGV---------------------ELCAFLGSQLLEVFCNWTSMMGM 39
++LG +VH ++ CG E+C +W +M+
Sbjct: 149 VKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISC 208
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y + G Y E ++LF M+ GV PD + C++LKD +GK ++ Y++ K
Sbjct: 209 YVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIR 268
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQ---DFLVNNSLIDFYAKCRYLKVSHCKFSKI 156
+ L+D++ KCG+M+ GL D+ D ++ +L+ Y K + + F K+
Sbjct: 269 GSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKM 328
Query: 157 KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKL 216
++ LVSW M++GY GG+ E L +M ++ P+ ++L VL+AC ++ L
Sbjct: 329 NERSLVSWTTMMSGYVQGGYYCESLELFQQMRF--ENVIPDEVALVTVLSACVHLEDFDL 386
Query: 217 GKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVR 265
G+++H +++ + + L CG + + F QL + WNS++ F R
Sbjct: 387 GRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCR 446
Query: 266 SGQVVDALDLL-----RDVI--------------------------VANVKPNTVTIVSV 294
SG V A D +D++ +NVKP+ T++S+
Sbjct: 447 SGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISL 506
Query: 295 LPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
L +C K+ AL G +G + + ALIDMYG+CG ++ + +IF + KN+
Sbjct: 507 LSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNV 566
Query: 344 VSWNVMISVYG 354
W M++ Y
Sbjct: 567 FVWTAMMAAYA 577
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 178/344 (51%), Gaps = 27/344 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+MM Y GYY E + LF M + V PD V AC L+D+ +G+ V+ ++
Sbjct: 335 SWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFI 394
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSH 150
++ + + LLDL+ KCG+++ FE++ + NS++D + + + +
Sbjct: 395 VTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKAR 454
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F+KI +KD+VSWN M+ Y E + +M+ ++++P+ +L +L++CA+
Sbjct: 455 DFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQ--SSNVKPDKTTLISLLSSCAK 512
Query: 211 VKGVKLGKAIHGYVLRHHI----HLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
V + G ++ Y+ ++ I L TA CG V + +F Q+ ++V VW ++
Sbjct: 513 VGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAM 572
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL----GTGSFV- 314
++A+ GQ ++A+DL ++ VKP+ VT +++L AC + +G SF
Sbjct: 573 MAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYN 632
Query: 315 -------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMI 350
+ ++D+ GR G ++++ K MP + VS W+ ++
Sbjct: 633 IIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLM 676
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/420 (21%), Positives = 183/420 (43%), Gaps = 108/420 (25%)
Query: 7 VHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYY-------------------- 46
+HAHLI + + SQ+L + ++ + +L Y
Sbjct: 54 IHAHLITANLIHDPEITSQVLAFLLSVNNLDCAHQILSYSHEPESIIWNTLLENKLKEGC 113
Query: 47 -EEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP 105
+E++ +Y M+ +GV D + AC + D ++G +V+ ++ F N +
Sbjct: 114 PQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNN 173
Query: 106 LLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWN 165
L+ L+ KCG+++ LFE+M +D++SWN
Sbjct: 174 LMGLYSKCGKLKEVCQLFEKM------------------------------THRDVISWN 203
Query: 166 AMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL 225
M++ Y L G E +L D EM+ + + P+ I++ +++ CA++K +++GK +H Y++
Sbjct: 204 TMISCYVLKGMYREALDLFD--EMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIV 261
Query: 226 RHH-----------IHLSTACGF------VICSC-------------------------- 242
+ + + + CG ++ C
Sbjct: 262 DNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKA 321
Query: 243 -SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
+F++++ R +V W +++S +V+ G ++L+L + + NV P+ V +V+VL AC+ L
Sbjct: 322 RQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHL 381
Query: 302 AALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
G +F+ NAL+D+Y +CG + ++ + F +P K+ SWN M+
Sbjct: 382 EDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSML 441
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 100/343 (29%), Positives = 183/343 (53%), Gaps = 27/343 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ + + + L+ M+ G+ P+ + P + K+C++ K + G+ ++ ++
Sbjct: 32 WNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAKSKTFTEGQQIHGQVL 91
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHC 151
+ F+ + V L+ ++++ R+E +F+ +D + +LI YA ++ +
Sbjct: 92 KLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALITGYASRGDIRSAQK 151
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I KD+VSWNAM++GYA G +E L +EM ++ +++P+ + VL+ACA
Sbjct: 152 LFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEM--MKMNVRPDESTYVTVLSACAHS 209
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++LG+ +H +V H I L + CG V +C +F LS +DV+ WN++I
Sbjct: 210 GSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLI 269
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-------------QG 307
+ +AL L ++++ + PN VT++SVLPAC L A+ +G
Sbjct: 270 GGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKG 329
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ S + +LIDMY +CG I+ + ++F M HK+L SWN MI
Sbjct: 330 VTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMI 372
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 126/289 (43%), Gaps = 45/289 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G Y+E + LF M+ VRPD V AC+ +G+ V+ ++
Sbjct: 163 SWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWV 222
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F+ N + N+LID Y+KC ++ +
Sbjct: 223 DDHGFDSN------------------------------LKIVNALIDLYSKCGEVETACG 252
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + KD++SWN ++ GY +E LL EM+++ PN +++ VL ACA +
Sbjct: 253 LFQGLSYKDVISWNTLIGGYTHMNLYKEA--LLLFQEMLRSGETPNDVTMLSVLPACAHL 310
Query: 212 KGVKLGKAIHGYV------------LRHH-IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ +G+ IH Y+ LR I + CG + + VFN + + + WN+
Sbjct: 311 GAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNA 370
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
+I F G+ + DL + ++P+ +T V +L AC L G
Sbjct: 371 MIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLG 419
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 121/254 (47%), Gaps = 55/254 (21%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I++ + + WN M+ G+AL + V++L + M+ + PN+ + +L +CA+ K
Sbjct: 21 FETIQEPNQLIWNTMIRGHALSS--DPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAKSK 78
Query: 213 GVKLGKAIHGYVLRH------HIHLS---------------------------------- 232
G+ IHG VL+ ++H S
Sbjct: 79 TFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALIT 138
Query: 233 --TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
+ G + + +F+++ +DVV WN++IS + +G +AL+L +++ NV+P+ T
Sbjct: 139 GYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDEST 198
Query: 291 IVSVLPACLKLAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLMP 339
V+VL AC ++ G S+V NALID+Y +CG ++ + +F +
Sbjct: 199 YVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLS 258
Query: 340 HKNLVSWNVMISVY 353
+K+++SWN +I Y
Sbjct: 259 YKDVISWNTLIGGY 272
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 121/278 (43%), Gaps = 48/278 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++G Y + Y+E + LF M+ G P+ V AC+ L +G+ ++ Y
Sbjct: 264 SWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVY- 322
Query: 92 ISIKFEG--NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
I + +G NA R SLID YAKC ++ +
Sbjct: 323 IDKRLKGVTNASSLR-----------------------------TSLIDMYAKCGDIEAA 353
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
H F+ + K L SWNAM+ G+A+ G + +L M I ++P+ I+ G+L+AC+
Sbjct: 354 HQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKI--GIEPDDITFVGLLSACS 411
Query: 210 QVKGVKLGKAIHGYV---------LRHH---IHLSTACGFVICSCSVFNQLSTR-DVVVW 256
+ LG+ I + L H+ I L G + + N + D V+W
Sbjct: 412 HSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIW 471
Query: 257 NSIISAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVS 293
S++ A G V A +++I + P++ ++S
Sbjct: 472 CSLLKACKMHGNVELAESFAQNLIKIEPENPSSYILLS 509
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 11/125 (8%)
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ SVF + + ++WN++I S V +L L ++ + PN+ T +L +C K
Sbjct: 17 ATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAK 76
Query: 301 LAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
+ G +V +LI MY + ++ + K+F H+++VS+ +
Sbjct: 77 SKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTAL 136
Query: 350 ISVYG 354
I+ Y
Sbjct: 137 ITGYA 141
>gi|255566945|ref|XP_002524455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536243|gb|EEF37895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 486
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 113/399 (28%), Positives = 195/399 (48%), Gaps = 55/399 (13%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFC------NWTSMMGMYNVLGYYEEIV--------- 50
Q+H+ +I G+ F S+L+E FC + + + ++ +G +I+
Sbjct: 42 QIHSQVIKTGLHNTHFALSKLIE-FCVISPYGDLSYALLLFKSIGKPNQIIWNNIIRGLS 100
Query: 51 ---------NLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+ MI G P+ + P V K+C+ + GK ++ ++ + F+ +A
Sbjct: 101 LSESPILAIQYYVDMISSGFTPNTYTYPFVLKSCARISSTHEGKQIHGQILKLGFDNDAF 160
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
V L+ ++++ G + +FE +D + +LI YA +L + F +I +D
Sbjct: 161 VHTSLITMYVQNGELGNARLVFERSSMRDVVSYTALITGYASRGFLDQALELFDEIPVRD 220
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+VSWNAM+AGY G EE +EM ++ ++ PN +L VL+ACAQ +K+G +
Sbjct: 221 VVSWNAMIAGYTQSGRFEEALIFFEEM--LRANVTPNMSTLLSVLSACAQSGSLKMGNWV 278
Query: 221 HGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
++ H I + CG + + +F + ++V+ WN +I +
Sbjct: 279 SSWIEEHGLESNIKVMNALIDMYAKCGDLENALHLFEGIKNKNVISWNVMIGGYTHLSCY 338
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG--------------TGSFVW 315
+AL L R ++ +NV+PN VT++S+LPAC L AL GLG + +W
Sbjct: 339 KEALGLFRQMLQSNVEPNDVTLLSILPACANLGAL--GLGKWIHAYIDKNMKNLANNALW 396
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+LIDMY +CG I+ + +IF M K+L SWN MIS +
Sbjct: 397 TSLIDMYAKCGNIEVANQIFDGMNPKSLASWNAMISGFA 435
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 140/315 (44%), Gaps = 69/315 (21%)
Query: 12 IVCGVELCAFLGSQLLEVF--------CNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRP 63
++ G FL Q LE+F +W +M+ Y G +EE + F M+ V P
Sbjct: 196 LITGYASRGFL-DQALELFDEIPVRDVVSWNAMIAGYTQSGRFEEALIFFEEMLRANVTP 254
Query: 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLF 123
+ V AC++ ++G V ++ E N IK
Sbjct: 255 NMSTLLSVLSACAQSGSLKMGNWVSSWIEEHGLESN-----------IK----------- 292
Query: 124 EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGY--------ALGG 175
V N+LID YAKC L+ + F IK K+++SWN M+ GY ALG
Sbjct: 293 --------VMNALIDMYAKCGDLENALHLFEGIKNKNVISWNVMIGGYTHLSCYKEALGL 344
Query: 176 FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-- 233
FR+ M+Q++++PN ++L +L ACA + + LGK IH Y+ ++ +L+
Sbjct: 345 FRQ----------MLQSNVEPNDVTLLSILPACANLGALGLGKWIHAYIDKNMKNLANNA 394
Query: 234 ----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283
CG + + +F+ ++ + + WN++IS F GQ A+ L +
Sbjct: 395 LWTSLIDMYAKCGNIEVANQIFDGMNPKSLASWNAMISGFAMHGQADLAISLFSRMTKEG 454
Query: 284 VKPNTVTIVSVLPAC 298
+ P+ +T + VL AC
Sbjct: 455 LVPDNITFIGVLSAC 469
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 141/310 (45%), Gaps = 62/310 (20%)
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVN-----NSLIDFYAKCRYLKVSHCK--FSKI 156
P L L C ++ + ++ + L N + LI+F Y +S+ F I
Sbjct: 25 HPSLTLLSTCKNLKTLKQIHSQVIKTGLHNTHFALSKLIEFCVISPYGDLSYALLLFKSI 84
Query: 157 KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKL 216
+ + + WN ++ G +L + + ++MI + PNT + VL +CA++
Sbjct: 85 GKPNQIIWNNIIRGLSLS--ESPILAIQYYVDMISSGFTPNTYTYPFVLKSCARISSTHE 142
Query: 217 GKAIHGYVLR------HHIHLS------------------------------------TA 234
GK IHG +L+ +H S +
Sbjct: 143 GKQIHGQILKLGFDNDAFVHTSLITMYVQNGELGNARLVFERSSMRDVVSYTALITGYAS 202
Query: 235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV 294
GF+ + +F+++ RDVV WN++I+ + +SG+ +AL +++ ANV PN T++SV
Sbjct: 203 RGFLDQALELFDEIPVRDVVSWNAMIAGYTQSGRFEEALIFFEEMLRANVTPNMSTLLSV 262
Query: 295 LPACLKLAAL-----------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
L AC + +L GL + V NALIDMY +CG ++ + +F + +KN+
Sbjct: 263 LSACAQSGSLKMGNWVSSWIEEHGLESNIKVMNALIDMYAKCGDLENALHLFEGIKNKNV 322
Query: 344 VSWNVMISVY 353
+SWNVMI Y
Sbjct: 323 ISWNVMIGGY 332
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 86/197 (43%), Gaps = 39/197 (19%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W M+G Y L Y+E + LF M+ V P+ + AC+ L +GK ++ Y+
Sbjct: 324 SWNVMIGGYTHLSCYKEALGLFRQMLQSNVEPNDVTLLSILPACANLGALGLGKWIHAYI 383
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNN----SLIDFYAKCRYLK 147
+ + L NN SLID YAKC ++
Sbjct: 384 ---------------------------------DKNMKNLANNALWTSLIDMYAKCGNIE 410
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
V++ F + K L SWNAM++G+A+ G + +L M + + P+ I+ GVL+A
Sbjct: 411 VANQIFDGMNPKSLASWNAMISGFAMHGQADLAISLFS--RMTKEGLVPDNITFIGVLSA 468
Query: 208 CAQVKGVKLGKAIHGYV 224
C + LG H ++
Sbjct: 469 CNHAGLLDLGHINHFHI 485
>gi|302784186|ref|XP_002973865.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
gi|300158197|gb|EFJ24820.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
Length = 616
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 112/395 (28%), Positives = 177/395 (44%), Gaps = 78/395 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G ++H H++ G ++G+ L++++ +W+ M+ Y
Sbjct: 86 GKKIHEHVVKNGYYENVYVGNHLVQMYSKCGSLEDAKKVFDGMRRRDSISWSKMIAGYVR 145
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL--KDYRVGKDVYDYMISIKFEGNA 100
G E + L+ M + PD F V ACS L + VGK+++ +M I
Sbjct: 146 HGLAREAIKLYKAM---AIDPDGFTFSAVLNACSSLGPRALEVGKEIHAHMKRIW----- 197
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
+ D V+++L+ +AKC LK S F + KD
Sbjct: 198 -------------------------LKPDVFVDSALVTMFAKCGSLKESREVFDDCRWKD 232
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
++ WN+M+ Y+ G E L M ++PN I+ + VLAAC+ V+ ++ GK +
Sbjct: 233 VLFWNSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNAITYTTVLAACSAVEDLEQGKEV 292
Query: 221 HGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H ++ A CG + + VF+ + R VV W IISA+VR G
Sbjct: 293 HRQMVDAGFQFDAAAENSLVNMYAKCGSITEAREVFDGMKQRTVVSWTGIISAYVRKGHP 352
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNAL 318
+ALDL R + V+PN +T SVL AC L AL +G + V NAL
Sbjct: 353 REALDLYRKMGSEGVEPNGITFASVLSACSSLGALEEGKAVHAQMKAAGYKPDLAVANAL 412
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ +YG+CG++ +RK+F M +N+VSW MIS Y
Sbjct: 413 VSLYGKCGSVDSARKVFDRMKIRNVVSWTAMISAY 447
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/393 (24%), Positives = 168/393 (42%), Gaps = 79/393 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+E+G ++HAH+ ++ F+ S L+ +F W SM+
Sbjct: 183 LEVGKEIHAHMKRIWLKPDVFVDSALVTMFAKCGSLKESREVFDDCRWKDVLFWNSMIVA 242
Query: 40 YNVLGYYEEIVNLFYLMIDKG--VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
Y+ G+ E + LF M V P+ V ACS ++D GK+V+ M+ F+
Sbjct: 243 YSQSGHPREAIELFKSMGSSSPPVEPNAITYTTVLAACSAVEDLEQGKEVHRQMVDAGFQ 302
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
+A + NSL++ YAKC + + F +K
Sbjct: 303 FDAAAE------------------------------NSLVNMYAKCGSITEAREVFDGMK 332
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
Q+ +VSW +++ Y G E +L +M ++PN I+ + VL+AC+ + ++ G
Sbjct: 333 QRTVVSWTGIISAYVRKGHPREALDLYRKMG--SEGVEPNGITFASVLSACSSLGALEEG 390
Query: 218 KAIH------GY-----VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
KA+H GY V + L CG V + VF+++ R+VV W ++ISA+
Sbjct: 391 KAVHAQMKAAGYKPDLAVANALVSLYGKCGSVDSARKVFDRMKIRNVVSWTAMISAYAHH 450
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----GLGTGSFVWNALIDM 321
+A+ L + + + V+ ++ +VL AC + L G T A ++
Sbjct: 451 RHSEEAIQLYKAMDLEGVQASSFIYGTVLTACSQAGLLESARHYFGCLTRDCGAPAKLED 510
Query: 322 Y-------GRCGAIQKSRKIFVLMP-HKNLVSW 346
Y GR G + ++ ++ +MP V+W
Sbjct: 511 YVCMATVLGRAGRLAEAEELLAVMPFEAEFVAW 543
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 25/183 (13%)
Query: 191 QTDMQP---NTISLSGVLAACAQVKG--VKLGKAIHGYVLRHHIHLSTACGFVICSCSVF 245
Q D P N + G LAA ++ VK G + YV H + + + CG + + VF
Sbjct: 66 QEDCAPAYGNLLRDCGELAAGKKIHEHVVKNGYYENVYVGNHLVQMYSKCGSLEDAKKVF 125
Query: 246 NQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP 305
+ + RD + W+ +I+ +VR G +A+ L + + + P+ T +VL AC L P
Sbjct: 126 DGMRRRDSISWSKMIAGYVRHGLAREAIKLYKAMA---IDPDGFTFSAVLNACSSLG--P 180
Query: 306 QGLGTGS---------------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ L G FV +AL+ M+ +CG++++SR++F K+++ WN MI
Sbjct: 181 RALEVGKEIHAHMKRIWLKPDVFVDSALVTMFAKCGSLKESREVFDDCRWKDVLFWNSMI 240
Query: 351 SVY 353
Y
Sbjct: 241 VAY 243
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/343 (27%), Positives = 185/343 (53%), Gaps = 27/343 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M + + + L+ M+ G+ P+ + P + K+C++ ++ G+ ++ ++
Sbjct: 71 WNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVL 130
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHC 151
F+ + + L+ ++++ GR+E + ++ +D + +LI YA ++ +H
Sbjct: 131 KFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHK 190
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I KD+VSWNA ++GYA G +E L +M ++T+++P+ ++ VL+ACAQ
Sbjct: 191 MFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKM--MKTNVRPDESTMVTVLSACAQS 248
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++LG+ +H ++ H I L + CG + +C +F LS +DV+ WN++I
Sbjct: 249 GSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLI 308
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-------------QG 307
+ +AL L +D++ + KPN VT++S+L AC L A+ +G
Sbjct: 309 GGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKG 368
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ S + +LIDMY +CG I+ ++++F M +++L SWN MI
Sbjct: 369 VTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMI 411
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 142/334 (42%), Gaps = 61/334 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W + + Y G Y+E + LF M+ VRPD V AC++ +G+ V+ ++
Sbjct: 202 SWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWI 261
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F N + N+LID Y+KC L+ +
Sbjct: 262 NDHGFGXN------------------------------LKIVNALIDLYSKCGELETACG 291
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + KD++SWN ++ GY +E LL +M+++ +PN +++ +L+ACA +
Sbjct: 292 LFQGLSNKDVISWNTLIGGYTHMNLYKEA--LLLFQDMLRSGEKPNDVTMLSILSACAHL 349
Query: 212 KGVKLGKAIHGYV------------LRHH-IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ +G+ IH Y+ LR I + CG + + VF+ + R + WN+
Sbjct: 350 GAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNA 409
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV---- 314
+I F G+ A D+ + ++P+ +T V +L AC L LG F
Sbjct: 410 MIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGML--DLGRHIFRSMTR 467
Query: 315 ----------WNALIDMYGRCGAIQKSRKIFVLM 338
+ +ID+ G G +++ K+ M
Sbjct: 468 DYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTM 501
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 119/254 (46%), Gaps = 55/254 (21%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I++ L+ WN M G+AL + V+ L + M+ + PN+ + +L +CA+
Sbjct: 60 FDTIQEPXLLIWNTMFRGHALSS--DPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSX 117
Query: 213 GVKLGKAIHGYVLRH------HIHLS---------------------------------- 232
K G+ +HG VL+ +IH S
Sbjct: 118 AFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALIT 177
Query: 233 --TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
+ G + + +F+++ +DVV WN+ IS + +G +AL+L + ++ NV+P+ T
Sbjct: 178 GYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDEST 237
Query: 291 IVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+V+VL AC + ++ G G + NALID+Y +CG ++ + +F +
Sbjct: 238 MVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLS 297
Query: 340 HKNLVSWNVMISVY 353
+K+++SWN +I Y
Sbjct: 298 NKDVISWNTLIGGY 311
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 109/254 (42%), Gaps = 49/254 (19%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++G Y + Y+E + LF M+ G +P+ + AC+ L +G+ ++ Y
Sbjct: 303 SWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVY- 361
Query: 92 ISIKFEG---NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKV 148
I + +G + ++ L+D++ KCG +E +F+ M +N S
Sbjct: 362 IDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSM-----LNRS------------- 403
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
L SWNAM+ G+A+ G ++ M + ++P+ I+ G+L+AC
Sbjct: 404 ------------LSSWNAMIFGFAMHGRANAAFDIFSRMR--KNGIEPDDITFVGLLSAC 449
Query: 209 AQVKGVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTR-DVVV 255
+ + LG+ I + R + I L G + + N + D V+
Sbjct: 450 SHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVI 509
Query: 256 WNSIISAFVRSGQV 269
W S++ A G V
Sbjct: 510 WCSLLKACKMHGNV 523
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 11/123 (8%)
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
SVF+ + +++WN++ S V AL L ++ + PN+ T +L +C K
Sbjct: 58 SVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSX 117
Query: 303 ALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
A + G ++ +LI MY + G ++ ++K+ H+++VS+ +I+
Sbjct: 118 AFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALIT 177
Query: 352 VYG 354
Y
Sbjct: 178 GYA 180
>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
Length = 862
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 115/394 (29%), Positives = 190/394 (48%), Gaps = 75/394 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G+Q+H+ + CG+E + + LL ++ W M+
Sbjct: 261 GVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQ 320
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G +E + LF M+ G RPD + A ++L + GK+V+ Y+I CV
Sbjct: 321 NGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYII------RNCV 374
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
MD FLV+ +L+D Y KCR ++ + + + D+V
Sbjct: 375 ----------------------HMDA-FLVS-ALVDIYFKCRDVRTARNLYDAARAIDVV 410
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+ +++GY L G E+ + +++ ++PN ++++ VL ACA + + LG+ IHG
Sbjct: 411 IGSTVISGYVLNGMSEKALQMF--RYLLEQCIKPNAVTVASVLPACASISALPLGQEIHG 468
Query: 223 YVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
YVLR+ + + CG + S +F+++S +D V WNS+IS+F ++G+ +
Sbjct: 469 YVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQE 528
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALID 320
ALDL R + + +K N VTI S L AC L A+ G + F +ALID
Sbjct: 529 ALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKADIFAESALID 588
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
MY +CG ++ + ++F MP KN VSWN +IS YG
Sbjct: 589 MYAKCGNMELALRVFEFMPDKNEVSWNSIISAYG 622
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 102/396 (25%), Positives = 170/396 (42%), Gaps = 75/396 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+ LG VH G+ ++GS L++++ + W MM
Sbjct: 157 VSLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDG 216
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G V LF M G P+ C+ D G ++ + E
Sbjct: 217 YIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQE 276
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V LL ++ KC ++ LFE + +D
Sbjct: 277 VAVANTLLSMYAKCRCLDDAWRLFELLPRD------------------------------ 306
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
DLV+WN M++G G +E L +M+++ +P++++L +L A + G+K GK
Sbjct: 307 DLVTWNGMISGCVQNGLLDEALGLF--CDMLRSGARPDSVTLVSLLPALTDLNGLKQGKE 364
Query: 220 IHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+HGY++R+ +H+ C V + ++++ DVV+ +++IS +V +G
Sbjct: 365 VHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGM 424
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW-----------NA 317
AL + R ++ +KPN VT+ SVLPAC ++ALP G +V +A
Sbjct: 425 SEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKCYVESA 484
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L+DMY +CG + S IF M K+ V+WN MIS +
Sbjct: 485 LMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSF 520
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 92/385 (23%), Positives = 179/385 (46%), Gaps = 76/385 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
++ G +VH ++I V + AFL S L++++ ++++
Sbjct: 359 LKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISG 418
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y + G E+ + +F ++++ ++P+ V AC+ + +G++++ Y++ +EG
Sbjct: 419 YVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEG- 477
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
KC V ++L+D YAKC L +SH FSK+ K
Sbjct: 478 ------------KC-----------------YVESALMDMYAKCGRLDLSHYIFSKMSLK 508
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D V+WN+M++ ++ G +E +L +M M ++ N +++S L+ACA + + GK
Sbjct: 509 DEVTWNSMISSFSQNGEPQEALDLFRQMCM--EGIKYNNVTISSALSACASLPAIYYGKE 566
Query: 220 IHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IHG +++ I + CG + + VF + ++ V WNSIISA+ G
Sbjct: 567 IHGVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNEVSWNSIISAYGAHGL 626
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-----TGSFV-------WN 316
V +++ L + KP+ VT ++++ AC + +GL T ++ +
Sbjct: 627 VKESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQLFQCMTKEYLIAPRMEHFA 686
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHK 341
++D+Y R G + K+ + MP K
Sbjct: 687 CMVDLYSRSGRLDKAIQFIADMPFK 711
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 119/278 (42%), Gaps = 26/278 (9%)
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
CV P L L ++ + SG + ++ L+ Y R + + FS + +
Sbjct: 40 RGCVSAPHLPLGLQIHARAVVSGALSNHNH-LALHTRLLGMYVLARRFRDAVAVFSALPR 98
Query: 159 KDLVS---WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
S WN ++ G+ G +M P+ +L V+ +CA + V
Sbjct: 99 AAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGAVS 158
Query: 216 LGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
LG+ +H YV I + + G + + F+ + RD V+WN ++ ++
Sbjct: 159 LGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYI 218
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF----------- 313
++G V A+ L R++ V+ +PN T+ L C A L G+ S
Sbjct: 219 KAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVA 278
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
V N L+ MY +C + + ++F L+P +LV+WN MIS
Sbjct: 279 VANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMIS 316
>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
Length = 853
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 112/394 (28%), Positives = 187/394 (47%), Gaps = 75/394 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G Q+H+ + CG+E + + LL ++ W M+
Sbjct: 261 GAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQ 320
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G + E LFY M G RPD + A ++L + GK+V+ Y++
Sbjct: 321 NGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVR--------- 371
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
C M++ FLV+ +L+D Y KCR ++++ + + D+V
Sbjct: 372 ---------NCVNMDV-----------FLVS-ALVDIYFKCRDVRMAQNLYDAARAIDVV 410
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+ M++GY L G EE + +++ ++PN ++++ VL CA + + LG+ IHG
Sbjct: 411 IGSTMISGYVLNGMSEEALQMF--RYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHG 468
Query: 223 YVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
YVLR+ + + CG + S +F ++S +D V WNS+IS+F ++G+ +
Sbjct: 469 YVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQE 528
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALID 320
ALDL R + + +K N +TI + L AC L A+ G + F +ALID
Sbjct: 529 ALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVTIKGPIKADIFAESALID 588
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
MY +CG ++ + ++F MP KN VSWN +IS YG
Sbjct: 589 MYAKCGNLELALRVFEFMPDKNEVSWNSIISAYG 622
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 107/396 (27%), Positives = 176/396 (44%), Gaps = 75/396 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
M LG VH G+ ++GS L++++ + W MM
Sbjct: 157 MSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDG 216
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
G + V LF M G P+ C+ D G ++
Sbjct: 217 CIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHS---------- 266
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
L +KCG ++ + V N+L+ YAKC+ L + F + Q
Sbjct: 267 ---------LAVKCG-----------LEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQD 306
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
DLV+WN M++G G E L +M+ ++ +P++I+L +L A + G+K GK
Sbjct: 307 DLVTWNGMISGCVQNGLFVEAFGLFYDMQ--RSGARPDSITLVSLLPALTDLNGLKQGKE 364
Query: 220 IHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+HGY++R+ +++ C V + ++++ DVV+ +++IS +V +G
Sbjct: 365 VHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGM 424
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW-----------NA 317
+AL + R ++ +KPN VTI SVLP C +AALP G +V +A
Sbjct: 425 SEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVESA 484
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L+DMY +CG + S IF+ M K+ V+WN MIS +
Sbjct: 485 LMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSF 520
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 91/385 (23%), Positives = 175/385 (45%), Gaps = 76/385 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
++ G +VH +++ V + FL S L++++ ++M+
Sbjct: 359 LKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISG 418
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y + G EE + +F ++++ ++P+ V C+ + +G+ ++ Y++ +E
Sbjct: 419 YVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYER- 477
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
KC V ++L+D YAKC L +SH F K+ QK
Sbjct: 478 ------------KC-----------------YVESALMDMYAKCGRLDLSHYIFLKMSQK 508
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D V+WN+M++ ++ G +E +L +M M ++ N I++S L+ACA + + GK
Sbjct: 509 DEVTWNSMISSFSQNGKPQEALDLFRQMCM--EGIKYNNITISAALSACASLPAIYYGKE 566
Query: 220 IHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IHG ++ I + CG + + VF + ++ V WNSIISA+ G
Sbjct: 567 IHGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMPDKNEVSWNSIISAYGAHGL 626
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-----TGSFV-------WN 316
V +++ LL + KP+ VT ++++ AC + +G+ T ++ +
Sbjct: 627 VKESVSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQLFQCMTKKYLIAPRMEHFA 686
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHK 341
++D+Y R G + K+ + MP K
Sbjct: 687 CMVDLYSRSGKLDKAIQFIADMPFK 711
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 128/314 (40%), Gaps = 33/314 (10%)
Query: 63 PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGL 122
P C + A + + D D ++++ CV P L L ++ + SG
Sbjct: 11 PPRPFCSTTFSATAAVTDVSSA----DRLLAVL---RGCVSAPHLPLGLQIHARAVVSGA 63
Query: 123 FEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS---WNAMLAGYALGGFREE 179
+ + ++ L+ Y R + + FS + + S WN ++ G+ G
Sbjct: 64 LSDHNH-LALHTRLLGMYVLARRFRDAVAVFSALPRAAAASSLPWNWLIRGFTAAGQHHL 122
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG-----------YVLRHH 228
+M P+ +L V+ +CA + + LG+ +H YV
Sbjct: 123 AVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGAMSLGRLVHRTARAIGLANDVYVGSAL 182
Query: 229 IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288
+ + G + + F+ + RD V+WN ++ +++G V A+ L R++ + +PN
Sbjct: 183 VKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNF 242
Query: 289 VTIVSVLPACLKLAALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVL 337
T+ L C A L G S V N L+ MY +C + + ++F L
Sbjct: 243 ATLACFLSVCATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFEL 302
Query: 338 MPHKNLVSWNVMIS 351
MP +LV+WN MIS
Sbjct: 303 MPQDDLVTWNGMIS 316
>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 111/399 (27%), Positives = 196/399 (49%), Gaps = 53/399 (13%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYL---------- 55
Q+H+ +I G+ F S+L+E FC + + L ++ I N ++
Sbjct: 46 QIHSQIIKTGLHNTHFALSKLIE-FCAVSPHGDLSYALSLFKTIRNPNHVIWNHMIRGLS 104
Query: 56 --------------MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
MI G P+ + P ++K+C++++ GK V+ +++ + E NA
Sbjct: 105 SSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAF 164
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
V L++++ + G + +F++ +D + +LI YA +L + F +I +D
Sbjct: 165 VHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRD 224
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV-KGVKLGKA 219
+VSWNAM++GYA G EE +EM + + PN ++ VL+ACAQ ++LG
Sbjct: 225 VVSWNAMISGYAQSGRVEEAMAFFEEMR--RAKVTPNVSTMLSVLSACAQSGSSLQLGNW 282
Query: 220 IHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+ ++ L +I L CG + + ++F ++ ++VV WN +I +
Sbjct: 283 VRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSC 342
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-------------W 315
+AL L R ++ +N+ PN VT +S+LPAC L AL G ++V W
Sbjct: 343 YKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALW 402
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+LIDMY +CG + +++IF M K+L +WN MIS +
Sbjct: 403 TSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFA 441
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 100/404 (24%), Positives = 166/404 (41%), Gaps = 86/404 (21%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRP 63
G QVHAH++ G+E AF+ TS++ MY G E+VN L+ DK
Sbjct: 147 GKQVHAHVLKLGLEHNAFVH----------TSLINMYAQNG---ELVNA-RLVFDKSSMR 192
Query: 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLF 123
D + + ++++D I ++ + ++ + + GR+E F
Sbjct: 193 DAVSFTALITGYASKGFLDEARELFDE-IPVR---DVVSWNAMISGYAQSGRVEEAMAFF 248
Query: 124 EEM-------------------------------------DQDFLVN----NSLIDFYAK 142
EEM D+ N N LID Y K
Sbjct: 249 EEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVK 308
Query: 143 CRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLS 202
C L+ + F KI+ K++VSWN M+ GY +E L M+Q+++ PN ++
Sbjct: 309 CGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLF--RRMMQSNIDPNDVTFL 366
Query: 203 GVLAACAQVKGVKLGKAIHGYV------LRHHIHLSTA-------CGFVICSCSVFNQLS 249
+L ACA + + LGK +H YV +++ + L T+ CG + + +F+ ++
Sbjct: 367 SILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMN 426
Query: 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG 309
T+ + WN++IS F G AL L + P+ +T V VL AC L G
Sbjct: 427 TKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRR 486
Query: 310 TGSFV------------WNALIDMYGRCGAIQKSRKIFVLMPHK 341
S + + +ID++GR G ++ + M K
Sbjct: 487 YFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMK 530
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 24/174 (13%)
Query: 205 LAACAQVKGVKLGKAIHGYVLR---HHIHLSTACGFVICSCS----------VFNQLSTR 251
L + K ++ K IH +++ H+ H + + C+ S +F +
Sbjct: 32 LTLLSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNP 91
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-------- 303
+ V+WN +I S AL+ +I + +PN T S+ +C K+
Sbjct: 92 NHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVH 151
Query: 304 ---LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L GL +FV +LI+MY + G + +R +F ++ VS+ +I+ Y
Sbjct: 152 AHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYA 205
>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
Length = 907
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/345 (29%), Positives = 167/345 (48%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ Y LG E++ L M G+ PD + A + VGK V+ ++
Sbjct: 214 SWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHI 273
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ E QD + SLI Y KC + +
Sbjct: 274 LRAGLE------------------------------QDSHIETSLIGMYLKCGNVNSAFR 303
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + KD++SW AM++G + + M+++ + P+T +++ VLAACA++
Sbjct: 304 IFEGMMHKDVISWTAMISGLVQNDCADMAVTVF--RRMLKSRVMPSTATIASVLAACAEL 361
Query: 212 KGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSII 260
LG ++HGY+LR I L CG + SCSVF+++S RD+V WN+I+
Sbjct: 362 GSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIV 421
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
S ++G + AL L ++ A +P+++T+VS+L AC + AL QG LG
Sbjct: 422 SGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLG 481
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ AL+DMY +CG + ++K F MP ++LVSW+ +I+ YG
Sbjct: 482 PCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYG 526
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 179/373 (47%), Gaps = 42/373 (11%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRP 63
G+ H +IV G +++ TS++ Y+ G+ + +F M D+ V P
Sbjct: 67 GLSFHQRVIVDGYSSDSYIA----------TSLINFYSKFGHNQSARKVFDTMDDRNVVP 116
Query: 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLF 123
+ + ++ V +Y+ M + ++ LL ++ ++
Sbjct: 117 ----WTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACV 172
Query: 124 EE--MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVT 181
+ D + NS+++ Y KC ++ + F + +D++SWN++++GYA G EV
Sbjct: 173 IQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVL 232
Query: 182 NLLDEMEMIQTD-MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI----HLSTA-- 234
LL M +TD ++P+ + +++A A + +GK +HG++LR + H+ T+
Sbjct: 233 QLLIRM---KTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLI 289
Query: 235 -----CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289
CG V + +F + +DV+ W ++IS V++ A+ + R ++ + V P+T
Sbjct: 290 GMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTA 349
Query: 290 TIVSVLPACLKLAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLM 338
TI SVL AC +L + P G ++ N+L+ MY +CG +++S +F M
Sbjct: 350 TIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRM 409
Query: 339 PHKNLVSWNVMIS 351
+++VSWN ++S
Sbjct: 410 SRRDIVSWNAIVS 422
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/380 (22%), Positives = 164/380 (43%), Gaps = 76/380 (20%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYN 41
+G VH H++ G+E + + + L+ ++ +WT+M+
Sbjct: 265 VGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLV 324
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+ V +F M+ V P V AC+EL + +G V+ Y+
Sbjct: 325 QNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYI---------- 374
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
L + + D NSL+ YAKC +L+ S F ++ ++D+
Sbjct: 375 --------------------LRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDI 414
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSWNA+++G+A G + L +EM + +P++I++ +L ACA + + GK IH
Sbjct: 415 VSWNAIVSGHAQNGHLCKALLLFNEMR--KARQRPDSITVVSLLQACASIGALHQGKWIH 472
Query: 222 GYVLRH-----------HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
+V + + + + CG + + F+++ +D+V W+SII+ + G+
Sbjct: 473 NFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGE 532
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-----TGSFVWNA-------L 318
AL + D + ++PN V +S+L AC + QGL T F +
Sbjct: 533 TALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACI 592
Query: 319 IDMYGRCGAIQKSRKIFVLM 338
+D+ R G ++++ + M
Sbjct: 593 VDLLSRAGRVEEAYSFYKRM 612
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 101/211 (47%), Gaps = 21/211 (9%)
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH- 221
S+NA++ + G +V LL M+ TD P+ + ++ AC + G + H
Sbjct: 15 SYNAIINRLSTAGAFCDV--LLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQ 72
Query: 222 ----------GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
Y+ I+ + G + VF+ + R+VV W ++I + R+G+
Sbjct: 73 RVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDV 132
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPA--------CLKLAALPQGLGTGSFVWNALIDMYG 323
A + + ++P++VT++ +L CL + G G+ + N+++++Y
Sbjct: 133 AFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACVIQYGFGSDVALANSMLNVYC 192
Query: 324 RCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+CG ++ ++ +F LM ++++SWN ++S Y
Sbjct: 193 KCGRVEDAQALFELMDARDVISWNSLVSGYA 223
>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Vitis vinifera]
Length = 732
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/345 (29%), Positives = 167/345 (48%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ Y LG E++ L M G+ PD + A + VGK V+ ++
Sbjct: 214 SWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHI 273
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ E QD + SLI Y KC + +
Sbjct: 274 LRAGLE------------------------------QDSHIETSLIGMYLKCGNVNSAFR 303
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + KD++SW AM++G + + M+++ + P+T +++ VLAACA++
Sbjct: 304 IFEGMMHKDVISWTAMISGLVQNDCADMAVTVF--RRMLKSRVMPSTATIASVLAACAEL 361
Query: 212 KGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSII 260
LG ++HGY+LR I L CG + SCSVF+++S RD+V WN+I+
Sbjct: 362 GSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIV 421
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
S ++G + AL L ++ A +P+++T+VS+L AC + AL QG LG
Sbjct: 422 SGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLG 481
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ AL+DMY +CG + ++K F MP ++LVSW+ +I+ YG
Sbjct: 482 PCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYG 526
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 179/373 (47%), Gaps = 42/373 (11%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRP 63
G+ H +IV G +++ TS++ Y+ G+ + +F M D+ V P
Sbjct: 67 GLSFHQRVIVDGYSSDSYIA----------TSLINFYSKFGHNQSARKVFDTMDDRNVVP 116
Query: 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLF 123
+ + ++ V +Y+ M + ++ LL ++ ++
Sbjct: 117 ----WTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACV 172
Query: 124 EE--MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVT 181
+ D + NS+++ Y KC ++ + F + +D++SWN++++GYA G EV
Sbjct: 173 IQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVL 232
Query: 182 NLLDEMEMIQTD-MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI----HLSTA-- 234
LL M +TD ++P+ + +++A A + +GK +HG++LR + H+ T+
Sbjct: 233 QLLIRM---KTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLI 289
Query: 235 -----CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289
CG V + +F + +DV+ W ++IS V++ A+ + R ++ + V P+T
Sbjct: 290 GMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTA 349
Query: 290 TIVSVLPACLKLAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLM 338
TI SVL AC +L + P G ++ N+L+ MY +CG +++S +F M
Sbjct: 350 TIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRM 409
Query: 339 PHKNLVSWNVMIS 351
+++VSWN ++S
Sbjct: 410 SRRDIVSWNAIVS 422
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/338 (23%), Positives = 150/338 (44%), Gaps = 64/338 (18%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYN 41
+G VH H++ G+E + + + L+ ++ +WT+M+
Sbjct: 265 VGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLV 324
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+ V +F M+ V P V AC+EL + +G V+ Y+
Sbjct: 325 QNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYI---------- 374
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
L + + D NSL+ YAKC +L+ S F ++ ++D+
Sbjct: 375 --------------------LRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDI 414
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSWNA+++G+A G + L +EM + +P++I++ +L ACA + + GK IH
Sbjct: 415 VSWNAIVSGHAQNGHLCKALLLFNEMR--KARQRPDSITVVSLLQACASIGALHQGKWIH 472
Query: 222 GYVLRH-----------HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
+V + + + + CG + + F+++ +D+V W+SII+ + G+
Sbjct: 473 NFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGE 532
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
AL + D + ++PN V +S+L AC + QGL
Sbjct: 533 TALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGL 570
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 101/211 (47%), Gaps = 21/211 (9%)
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH- 221
S+NA++ + G +V LL M+ TD P+ + ++ AC + G + H
Sbjct: 15 SYNAIINRLSTAGAFCDV--LLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQ 72
Query: 222 ----------GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
Y+ I+ + G + VF+ + R+VV W ++I + R+G+
Sbjct: 73 RVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDV 132
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPA--------CLKLAALPQGLGTGSFVWNALIDMYG 323
A + + ++P++VT++ +L CL + G G+ + N+++++Y
Sbjct: 133 AFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACVIQYGFGSDVALANSMLNVYC 192
Query: 324 RCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+CG ++ ++ +F LM ++++SWN ++S Y
Sbjct: 193 KCGRVEDAQALFELMDARDVISWNSLVSGYA 223
>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 112/387 (28%), Positives = 188/387 (48%), Gaps = 72/387 (18%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLE---------VFCNWTS---------MMGMYNVLGYYE 47
Q+HA +++ + FL S++++ VF T + G+ Y+
Sbjct: 51 QIHAQMLINSIPKPNFLLSKIIDLKDLAYASLVFNQLTKPNIYAFNVMLRGLATTWKKYD 110
Query: 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL 107
V L+Y + G++ ++F P ++ AC ++ GK + C
Sbjct: 111 FCVELYYKLKSLGLKANNFTYPFLFIACGNVRGLVHGKIGH------------C------ 152
Query: 108 DLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAM 167
L K G +D D VN+SLI YA+C + + F ++ +DLVSWN+M
Sbjct: 153 -LVFKAG-----------LDGDEYVNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSM 200
Query: 168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH 227
++GY+ GF +E L MEM + +P+ ++L VL AC + + LG+ + G+VL
Sbjct: 201 ISGYSKMGFTKEAIGLF--MEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEK 258
Query: 228 HIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL 276
+ +++ CG +I + VF+ + +DVV WN+II+ + ++G +A+ L
Sbjct: 259 KMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLF 318
Query: 277 RDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWNALIDMYGRC 325
+ A P+ VT++ VL AC + AL +GL +V +ALIDMY +C
Sbjct: 319 NGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHDVYVASALIDMYAKC 378
Query: 326 GAIQKSRKIFVLMPHKNLVSWNVMISV 352
G++ + ++F MPHKN VSWN MIS
Sbjct: 379 GSLDDAVRVFESMPHKNEVSWNAMISA 405
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 156/335 (46%), Gaps = 57/335 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y+ +G+ +E + LF M ++G PD V AC +L D +G+ V ++
Sbjct: 196 SWNSMISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFV 255
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ K E N+ + L+D++ KCG + +F+ M
Sbjct: 256 LEKKMEVNSYMGSALIDMYGKCGDLISARRVFDSM------------------------- 290
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
KD+V+WNA++ GYA G E L + M + P+ +++ VL+AC+ +
Sbjct: 291 -----PNKDVVTWNAIITGYAQNGASNEAIVLFNGMR--EAGPHPDRVTMIEVLSACSTI 343
Query: 212 KGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ LGK + + L+H +++++A CG + + VF + ++ V WN++I
Sbjct: 344 GALDLGKWVETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMI 403
Query: 261 SAFVRSGQVVDALDLLRDVIVAN--VKPNTVTIVSVLPACLKLAALPQG----------L 308
SA GQ +AL L R + N V+PN +T + VL AC+ + +G
Sbjct: 404 SALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQLFESMNLSF 463
Query: 309 GTGSFV--WNALIDMYGRCGAIQKSRKIFVLMPHK 341
G V ++ ++D+ R G + ++ + MP K
Sbjct: 464 GLVPKVEHYSCMVDLCARAGLLYEAWDLIKKMPGK 498
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 137/284 (48%), Gaps = 32/284 (11%)
Query: 97 EGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-----NSLIDFYAKCRYLKVSHC 151
E + + LL L +C + L +++ L+N N L+ + L +
Sbjct: 27 EHHQTLTEKLLSLIKQCK----SKNLLKQIHAQMLINSIPKPNFLLSKIIDLKDLAYASL 82
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+++ + ++ ++N ML G A + + L ++ ++ N + + AC V
Sbjct: 83 VFNQLTKPNIYAFNVMLRGLATTWKKYDFCVEL-YYKLKSLGLKANNFTYPFLFIACGNV 141
Query: 212 KGVKLGKAIH-----------GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+G+ GK H YV I + CG + + VF+++ RD+V WNS+I
Sbjct: 142 RGLVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMI 201
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
S + + G +A+ L ++ +P+ +T+VSVL AC L L G +
Sbjct: 202 SGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKME 261
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
S++ +ALIDMYG+CG + +R++F MP+K++V+WN +I+ Y
Sbjct: 262 VNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGY 305
>gi|255572205|ref|XP_002527042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533604|gb|EEF35342.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 520
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 115/396 (29%), Positives = 184/396 (46%), Gaps = 75/396 (18%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQL--LEVFCN-------------------WTSMMGMY 40
+ G +H HLI G + S L L CN W +++ Y
Sbjct: 47 DYGRMIHTHLIKSGFVFDIVVASSLVSLHAKCNLFGYAIQLFDEMPERDVACWNTVISCY 106
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G E+ + +F M D G P+ V +C+ L D GK+++
Sbjct: 107 YQDGKAEKALEMFGKMRDSGFEPNSVTLTTVISSCARLLDLERGKEIH------------ 154
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
R + +G M D V ++L+D Y K L ++ F ++ +K
Sbjct: 155 --------------REVMQNG----MVLDGFVGSALVDMYGKFGCLDLAKDIFEQMPKKT 196
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
LV+WN+++AGY+ +E L M M T +P +LS +L AC++ ++ G+ I
Sbjct: 197 LVAWNSLIAGYSSAADSKECIELFWRMNMEGT--KPTVTTLSSILLACSRAAHLQHGRFI 254
Query: 221 HGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
HGY +R+ + L CG V + ++F L +VV+WN +IS +V G
Sbjct: 255 HGYAVRNRVQLDIFVSSGLIELYFKCGKVQSAENIFYMLPKANVVLWNVMISGYVTIGDY 314
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNAL 318
V ALD+ ++ +A+VKP+ VT S+L AC +LAAL +G L T V AL
Sbjct: 315 VKALDMYDEMKIASVKPDAVTFSSILSACSQLAALEKGKEIHNCITKNDLETNEIVMGAL 374
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+DMY +CGA+ ++ +F +P ++L+SW +IS YG
Sbjct: 375 LDMYAKCGAVDEALSVFNKLPERDLLSWTSIISAYG 410
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 153/340 (45%), Gaps = 55/340 (16%)
Query: 37 MGMYNVLGYYEEIVNLFYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIK 95
M Y Y E + LF ++ ++PD F P V KAC L Y G+ ++ ++I
Sbjct: 1 MAAYTKNCMYTEALELFDRLLQYPYLQPDSFTYPSVLKACGGLGRYDYGRMIHTHLIKSG 60
Query: 96 FEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSK 155
F + V L+ L KC LF+EM
Sbjct: 61 FVFDIVVASSLVSLHAKCNLFGYAIQLFDEM----------------------------- 91
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
++D+ WN +++ Y G E+ + +M + +PN+++L+ V+++CA++ ++
Sbjct: 92 -PERDVACWNTVISCYYQDGKAEKALEMFGKMR--DSGFEPNSVTLTTVISSCARLLDLE 148
Query: 216 LGKAIHGYVLRHHIHLSTACGFVIC-----------SCSVFNQLSTRDVVVWNSIISAFV 264
GK IH V+++ + L G + + +F Q+ + +V WNS+I+ +
Sbjct: 149 RGKEIHREVMQNGMVLDGFVGSALVDMYGKFGCLDLAKDIFEQMPKKTLVAWNSLIAGYS 208
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSF 313
+ + ++L + + KP T+ S+L AC + A L G + F
Sbjct: 209 SAADSKECIELFWRMNMEGTKPTVTTLSSILLACSRAAHLQHGRFIHGYAVRNRVQLDIF 268
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V + LI++Y +CG +Q + IF ++P N+V WNVMIS Y
Sbjct: 269 VSSGLIELYFKCGKVQSAENIFYMLPKANVVLWNVMISGY 308
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 163/355 (45%), Gaps = 68/355 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+E G ++H ++ G+ L F+GS L++++ W S++
Sbjct: 147 LERGKEIHREVMQNGMVLDGFVGSALVDMYGKFGCLDLAKDIFEQMPKKTLVAWNSLIAG 206
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y+ +E + LF+ M +G +P + ACS + G+ ++ Y
Sbjct: 207 YSSAADSKECIELFWRMNMEGTKPTVTTLSSILLACSRAAHLQHGRFIHGY--------- 257
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
A R LD+F+ G LI+ Y KC ++ + F + +
Sbjct: 258 AVRNRVQLDIFVSSG---------------------LIELYFKCGKVQSAENIFYMLPKA 296
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
++V WN M++GY G + ++ DEM++ ++P+ ++ S +L+AC+Q+ ++ GK
Sbjct: 297 NVVLWNVMISGYVTIGDYVKALDMYDEMKI--ASVKPDAVTFSSILSACSQLAALEKGKE 354
Query: 220 IHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH + ++ + + CG V + SVFN+L RD++ W SIISA+ GQ
Sbjct: 355 IHNCITKNDLETNEIVMGALLDMYAKCGAVDEALSVFNKLPERDLLSWTSIISAYGSHGQ 414
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYG 323
++AL L ++ + P+ VT ++VL AC + +G + +N +I YG
Sbjct: 415 ALEALRLFEELQQSKASPDAVTFLAVLSACSHAGLVDKGY----YYFNQMITNYG 465
>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Cucumis sativus]
gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Cucumis sativus]
Length = 693
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 113/394 (28%), Positives = 184/394 (46%), Gaps = 75/394 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G ++H HL+ G+ F+GS L+ ++ W +++ Y
Sbjct: 125 GRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFK 184
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G E + F M + G P+ V +C+ L + GK+V+ +I
Sbjct: 185 DGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIE--------- 235
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+R LLD F V ++L+D Y KC L+++ F KI +K+ +
Sbjct: 236 RRILLDAF---------------------VLSALVDMYGKCGCLEMAKEVFEKIPRKNAI 274
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+WNAM+ GY+L G LL M M +P ++L+ ++ A ++ ++ GK IHG
Sbjct: 275 TWNAMITGYSLKGDSRSCIELL--MRMNDEGTKPTLMTLTSIIYASSRSVQLRHGKFIHG 332
Query: 223 YVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
Y+LR+ I + CG+V + ++F +S +VV WN +IS V G +
Sbjct: 333 YILRNRIDVDIFIDVSLIDFYFKCGYVSSAETIFRTISKNEVVSWNVMISGHVMVGNHIQ 392
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALID 320
AL + ++ +VKP+ +T S L AC +LAAL +G L V AL+D
Sbjct: 393 ALHIYDNMKEHHVKPDALTFSSTLSACSQLAALDKGRELHYCIINHKLEANEIVMGALLD 452
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
MY +CG + ++RK+F +P ++LVSW MI YG
Sbjct: 453 MYAKCGDVDEARKLFHQLPKRDLVSWTSMIFAYG 486
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/379 (24%), Positives = 168/379 (44%), Gaps = 76/379 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
+E G +VH LI + L AF+ S L++++ W +M+
Sbjct: 223 LERGKEVHRELIERRILLDAFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITG 282
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y++ G + L M D+G +P + A S R GK ++ Y+
Sbjct: 283 YSLKGDSRSCIELLMRMNDEGTKPTLMTLTSIIYASSRSVQLRHGKFIHGYI-------- 334
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
L +D D ++ SLIDFY KC Y+ + F I +
Sbjct: 335 ----------------------LRNRIDVDIFIDVSLIDFYFKCGYVSSAETIFRTISKN 372
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
++VSWN M++G+ + G + ++ D M+ + ++P+ ++ S L+AC+Q+ + G+
Sbjct: 373 EVVSWNVMISGHVMVGNHIQALHIYDNMK--EHHVKPDALTFSSTLSACSQLAALDKGRE 430
Query: 220 IHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H ++ H + + CG V + +F+QL RD+V W S+I A+ GQ
Sbjct: 431 LHYCIINHKLEANEIVMGALLDMYAKCGDVDEARKLFHQLPKRDLVSWTSMIFAYGSHGQ 490
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWN 316
+AL L ++ NV+ ++VT ++VL AC + +G + G ++
Sbjct: 491 ASEALRLFDEMQKLNVRADSVTFLAVLSACSHAGLVDEGYMYFNEMVVQYDIKPGIEHYS 550
Query: 317 ALIDMYGRCGAIQKSRKIF 335
LID+ GR G + ++ +I
Sbjct: 551 CLIDLLGRAGRLHEAYEIL 569
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/342 (22%), Positives = 149/342 (43%), Gaps = 55/342 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLF-YLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +++ Y + E + LF L + VRPD + P V KAC L G+ +++++
Sbjct: 73 WNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVIYGRRIHNHL 132
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + V L++++ KC + LF+E
Sbjct: 133 LKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDE-------------------------- 166
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
Q+D+ WNA+++ Y G E D+M+ + +PN+++ + V+++C ++
Sbjct: 167 ----FPQRDVGCWNAVISCYFKDGKAEMALKTFDKMK--ELGFEPNSVTFTVVVSSCTRL 220
Query: 212 KGVKLGKAIH-----------GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ GK +H +VL + + CG + + VF ++ ++ + WN++I
Sbjct: 221 LNLERGKEVHRELIERRILLDAFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMI 280
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
+ + G ++LL + KP +T+ S++ A + L G +
Sbjct: 281 TGYSLKGDSRSCIELLMRMNDEGTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRID 340
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
F+ +LID Y +CG + + IF + +VSWNVMIS
Sbjct: 341 VDIFIDVSLIDFYFKCGYVSSAETIFRTISKNEVVSWNVMIS 382
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 123/250 (49%), Gaps = 26/250 (10%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIK-QKDLVSWNAMLAGYALGGFR-EEVTNLLDE 186
+ +++ SLI FY C + F D+ WNA+L+ Y FR E L D+
Sbjct: 37 NIVLSKSLIGFYFSCHDYASAELVFQTNDCPLDVSLWNALLSAYT-NNFRFVEALQLFDQ 95
Query: 187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI-----------HLSTAC 235
+ + ++P+ + VL AC + V G+ IH ++L+ + ++ C
Sbjct: 96 LN-CNSYVRPDFYTYPVVLKACGGLGRVIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKC 154
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
+ + +F++ RDV WN++IS + + G+ AL + +PN+VT V+
Sbjct: 155 DQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVV 214
Query: 296 PACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLV 344
+C +L L +G + +FV +AL+DMYG+CG ++ ++++F +P KN +
Sbjct: 215 SSCTRLLNLERGKEVHRELIERRILLDAFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAI 274
Query: 345 SWNVMISVYG 354
+WN MI+ Y
Sbjct: 275 TWNAMITGYS 284
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 21/160 (13%)
Query: 207 ACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
+C + L K++ G+ H + S F C + DV +WN+++SA+ +
Sbjct: 31 SCGFQSNIVLSKSLIGFYFSCHDYASAELVFQTNDCPL-------DVSLWNALLSAYTNN 83
Query: 267 GQVVDALDLLRDVIVAN--VKPNTVTIVSVLPACLKLAA-----------LPQGLGTGSF 313
+ V+AL L D + N V+P+ T VL AC L L GL F
Sbjct: 84 FRFVEALQLF-DQLNCNSYVRPDFYTYPVVLKACGGLGRVIYGRRIHNHLLKTGLIWDVF 142
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V ++L++MY +C + K+F P +++ WN +IS Y
Sbjct: 143 VGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCY 182
>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
Length = 694
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 109/400 (27%), Positives = 202/400 (50%), Gaps = 54/400 (13%)
Query: 7 VHAHLIVCGVELCAFLGSQLLEVFCN-------------------------WTSMMGMYN 41
+HA +I G+ + S+LLE FC W +M +
Sbjct: 7 IHAQMIKTGLHNTNYALSKLLE-FCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRGHA 65
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+ + L+ +MI G+ PD + P + K+C++ K + G+ ++ +++ + F+ +
Sbjct: 66 LSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIY 125
Query: 102 VKRPLLDLFIKCGRMEITSGLFE-EMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
V L+ ++ + GR+E +F+ +D + +LI Y Y++ + F +I KD
Sbjct: 126 VHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKD 185
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+VSWNAM++GY G +E L EM M+ T+++P+ ++ V++ACAQ ++LG+ +
Sbjct: 186 VVSWNAMISGYVETGNYKEALELFKEM-MMMTNVRPDESTMVTVVSACAQSDSIELGRHV 244
Query: 221 HGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H ++ H I L + G V +C +F+ L +DV+ WN++I +
Sbjct: 245 HSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLY 304
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-------------QGLGTG-SFVW 315
+AL L ++++ + PN VT++S+LPAC L A+ +G+ T S +
Sbjct: 305 KEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQ 364
Query: 316 NALIDMYGRCGAIQKSRKIF-VLMPHKNLVSWNVMISVYG 354
+LIDMY +CG I ++++F M +++L +WN MIS +
Sbjct: 365 TSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFA 404
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/336 (23%), Positives = 144/336 (42%), Gaps = 60/336 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFY-LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W +M+ Y G Y+E + LF +M+ VRPD V AC++ +G+ V+ +
Sbjct: 188 SWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSW 247
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ F N + L+DL+ K G +E L
Sbjct: 248 INDHGFASNLKIVNALIDLYSKFGEVETACEL---------------------------- 279
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + KD++SWN ++ GY +E LL EM+++ PN +++ +L ACA
Sbjct: 280 --FDGLWNKDVISWNTLIGGYTHMNLYKEA--LLLFQEMLRSGETPNDVTMLSILPACAH 335
Query: 211 VKGVKLGKAIHGYVLRHH--------------IHLSTACGFVICSCSVFNQ-LSTRDVVV 255
+ + +G+ IH Y+ + I + CG + + VF+ +S R +
Sbjct: 336 LGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLST 395
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LG 309
WN++IS F G+ A D+ + + ++P+ +T V +L AC L G +
Sbjct: 396 WNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMT 455
Query: 310 TGSFV------WNALIDMYGRCGAIQKSRKIFVLMP 339
G + + +ID+ G G +++ ++ MP
Sbjct: 456 RGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMP 491
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 111/394 (28%), Positives = 192/394 (48%), Gaps = 51/394 (12%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEI---------------- 49
Q+H+ +I G+ F S+L+E FC + + L +E I
Sbjct: 50 QIHSQIIKTGLHNTQFALSKLIE-FCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNS 108
Query: 50 --------VNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
++ + M+ GV P+ + P + K+C+++ + GK ++ +++ + E +
Sbjct: 109 LSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPF 168
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
V L++++ + G + +F + +D + +LI Y L + F +I +D
Sbjct: 169 VHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRD 228
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
VSWNAM+AGYA G EE EM+ + ++ PN ++ VL+ACAQ ++LG +
Sbjct: 229 AVSWNAMIAGYAQSGRFEEALAFFQEMK--RANVAPNESTMVTVLSACAQSGSLELGNWV 286
Query: 221 HGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
++ H I + + CG + + +F + +D++ WN +I +
Sbjct: 287 RSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSY 346
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG-TGSFVWNA 317
+AL L R + +NV+PN VT VS+LPAC L AL G LG T + +W +
Sbjct: 347 KEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTS 406
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
LIDMY +CG I+ ++++F M K+L SWN MIS
Sbjct: 407 LIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMIS 440
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 132/275 (48%), Gaps = 57/275 (20%)
Query: 134 NSLIDFYAKCRYLKVSHCK--FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
+ LI+F A + +S+ F I+Q + WN M+ G +L V + + M+
Sbjct: 68 SKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSS--SPVGAIDFYVRMLL 125
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR------HHIHLS------------- 232
++PN+ + +L +CA+V + GK IHG+VL+ +H S
Sbjct: 126 CGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGY 185
Query: 233 ----------------TA--CGFVICSC-----SVFNQLSTRDVVVWNSIISAFVRSGQV 269
TA G+ + C +F ++ RD V WN++I+ + +SG+
Sbjct: 186 AELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRF 245
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNAL 318
+AL +++ ANV PN T+V+VL AC + +L GLG+ + NAL
Sbjct: 246 EEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNAL 305
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
IDMY +CG + K+R +F + K+++SWNVMI Y
Sbjct: 306 IDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGY 340
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 139/334 (41%), Gaps = 56/334 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G +EE + F M V P+ V AC++ +G V +
Sbjct: 231 SWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSW- 289
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I+ G + + + N+LID Y+KC L +
Sbjct: 290 --IEDHG---------------------------LGSNLRLVNALIDMYSKCGDLDKARD 320
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F I +KD++SWN M+ GY+ +E L +M+ Q++++PN ++ +L ACA +
Sbjct: 321 LFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQ--QSNVEPNDVTFVSILPACAYL 378
Query: 212 KGVKLGKAIHGYVLRHHIHLSTA------------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ LGK IH Y+ + + L+ CG + + VF + + + WN++
Sbjct: 379 GALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAM 438
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----- 314
IS G AL+L R + +P+ +T V VL AC + G S +
Sbjct: 439 ISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYD 498
Query: 315 -------WNALIDMYGRCGAIQKSRKIFVLMPHK 341
+ +ID+ GR G ++ + M K
Sbjct: 499 ISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMK 532
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 111/394 (28%), Positives = 192/394 (48%), Gaps = 51/394 (12%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEI---------------- 49
Q+H+ +I G+ F S+L+E FC + + L +E I
Sbjct: 50 QIHSQIIKTGLHNTQFALSKLIE-FCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNS 108
Query: 50 --------VNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
++ + M+ GV P+ + P + K+C+++ + GK ++ +++ + E +
Sbjct: 109 LSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPF 168
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
V L++++ + G + +F + +D + +LI Y L + F +I +D
Sbjct: 169 VHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRD 228
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
VSWNAM+AGYA G EE EM+ + ++ PN ++ VL+ACAQ ++LG +
Sbjct: 229 AVSWNAMIAGYAQSGRFEEALAFFQEMK--RANVAPNESTMVTVLSACAQSGSLELGNWV 286
Query: 221 HGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
++ H I + + CG + + +F + +D++ WN +I +
Sbjct: 287 RSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSY 346
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG-TGSFVWNA 317
+AL L R + +NV+PN VT VS+LPAC L AL G LG T + +W +
Sbjct: 347 KEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTS 406
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
LIDMY +CG I+ ++++F M K+L SWN MIS
Sbjct: 407 LIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMIS 440
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 132/275 (48%), Gaps = 57/275 (20%)
Query: 134 NSLIDFYAKCRYLKVSHCK--FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
+ LI+F A + +S+ F I+Q + WN M+ G +L V + + M+
Sbjct: 68 SKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSS--SPVGAIDFYVRMLL 125
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR------HHIHLS------------- 232
++PN+ + +L +CA+V + GK IHG+VL+ +H S
Sbjct: 126 CGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGY 185
Query: 233 ----------------TA--CGFVICSC-----SVFNQLSTRDVVVWNSIISAFVRSGQV 269
TA G+ + C +F ++ RD V WN++I+ + +SG+
Sbjct: 186 AELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRF 245
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNAL 318
+AL +++ ANV PN T+V+VL AC + +L GLG+ + NAL
Sbjct: 246 EEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNAL 305
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
IDMY +CG + K+R +F + K+++SWNVMI Y
Sbjct: 306 IDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGY 340
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 122/279 (43%), Gaps = 44/279 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G +EE + F M V P+ V AC++ +G V +
Sbjct: 231 SWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSW- 289
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I+ G + + + N+LID Y+KC L +
Sbjct: 290 --IEDHG---------------------------LGSNLRLVNALIDMYSKCGDLDKARD 320
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F I +KD++SWN M+ GY+ +E L +M+ Q++++PN ++ +L ACA +
Sbjct: 321 LFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQ--QSNVEPNDVTFVSILPACAYL 378
Query: 212 KGVKLGKAIHGYVLRHHIHLSTA------------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ LGK IH Y+ + + L+ CG + + VF + + + WN++
Sbjct: 379 GALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAM 438
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
IS G AL+L R + +P+ +T V VL AC
Sbjct: 439 ISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSAC 477
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 85/187 (45%), Gaps = 31/187 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W M+G Y+ + Y+E + LF M V P+ + AC+ L +GK ++ Y
Sbjct: 332 SWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAY- 390
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I KF G + TS + SLID YAKC ++ +
Sbjct: 391 IDKKFLG-----------------LTNTS-----------LWTSLIDMYAKCGNIEAAKQ 422
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ +K K L SWNAM++G A+ G L +M +P+ I+ GVL+AC+
Sbjct: 423 VFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMR--DEGFEPDDITFVGVLSACSHA 480
Query: 212 KGVKLGK 218
V+LG+
Sbjct: 481 GLVELGR 487
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 9/101 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKD----- 86
+W +M+ + G+ + LF M D+G PD V ACS +G+
Sbjct: 434 SWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSM 493
Query: 87 VYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD 127
V DY IS K + C ++DL + G + L + M+
Sbjct: 494 VEDYDISPKLQHYGC----MIDLLGRAGLFDEAEALMKNME 530
>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
Length = 852
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 101/345 (29%), Positives = 177/345 (51%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W M+ G+ ++ + LF M G+RPD + A ++L + GK+++ Y+
Sbjct: 315 TWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYI 374
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ C M++ FLV+ +L+D Y KCR ++++
Sbjct: 375 VR------------------NCVHMDV-----------FLVS-ALVDIYFKCRAVRMAQS 404
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+ K D+V + M++GY L G +E + +++ ++PN ++++ VL ACA +
Sbjct: 405 VYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMF--RYLLEQGIRPNAVAIASVLPACASM 462
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+KLG+ +H Y L++ + + CG + S +F+++S +D V WNS+I
Sbjct: 463 AAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMI 522
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
S+F ++G+ +AL+L R++ + VK + VTI SVL AC L A+ G +
Sbjct: 523 SSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIR 582
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
F +ALIDMYG+CG ++ + ++F MP KN VSWN +I+ YG
Sbjct: 583 ADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYG 627
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 163/331 (49%), Gaps = 55/331 (16%)
Query: 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS 93
++M+ Y + G +E V +F ++++G+RP+ V AC+ + ++G++++ Y +
Sbjct: 418 STMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALK 477
Query: 94 IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKF 153
+EG +C V ++L+D YAKC L +SH F
Sbjct: 478 NAYEG-------------RC-----------------YVESALMDMYAKCGRLDLSHYIF 507
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG 213
SKI KD V+WN+M++ +A G EE NL EM M ++ + +++S VL+ACA +
Sbjct: 508 SKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCM--EGVKYSNVTISSVLSACASLPA 565
Query: 214 VKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISA 262
+ GK IHG V++ I + CG + + VF + ++ V WNSII++
Sbjct: 566 IYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIAS 625
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-----TGSFV--- 314
+ G V +++ LLR + K + VT ++++ AC + +GL T +
Sbjct: 626 YGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAP 685
Query: 315 ----WNALIDMYGRCGAIQKSRKIFVLMPHK 341
+ ++D+Y R G + K+ ++ V MP K
Sbjct: 686 RMEHFACMVDLYSRAGKLDKAMELIVDMPFK 716
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 107/380 (28%), Positives = 180/380 (47%), Gaps = 45/380 (11%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVL-GYYEEIVNLFYLMIDKGV 61
LG VH G++ F+GS L++++ N + V G E L+ +M+D V
Sbjct: 164 LGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYV 223
Query: 62 RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC---VKRPLLDLF--IKCGRM 116
+ V A D R F AC V DLF ++ +
Sbjct: 224 KAG-----SVSSAVELFGDMRASG------CEPNFATLACFLSVSATESDLFFGVQLHTL 272
Query: 117 EITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGF 176
+ GL + + V N+L+ YAKC+ L F + + DLV+WN M++G GF
Sbjct: 273 AVKYGL----ESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGF 328
Query: 177 REEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST--- 233
++ L +M+ ++ ++P++++L +L A + G GK +HGY++R+ +H+
Sbjct: 329 VDQALLLFCDMQ--KSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLV 386
Query: 234 --------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK 285
C V + SV++ DVV+ +++IS +V +G +A+ + R ++ ++
Sbjct: 387 SALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIR 446
Query: 286 PNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKI 334
PN V I SVLPAC +AA+ G S +V +AL+DMY +CG + S I
Sbjct: 447 PNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYI 506
Query: 335 FVLMPHKNLVSWNVMISVYG 354
F + K+ V+WN MIS +
Sbjct: 507 FSKISAKDEVTWNSMISSFA 526
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 145/346 (41%), Gaps = 58/346 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMI---DKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
W ++ + G Y + LFYL + PD P V K+C+ L +G+ V+
Sbjct: 112 WNWLIRGLTMAGDYRSAL-LFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVH- 169
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
R T GL D D V ++LI YA L +
Sbjct: 170 -------------------------RTARTLGL----DGDMFVGSALIKMYANGGLLWDA 200
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + ++D V WN M+ GY G L +M + +PN +L+ L+ A
Sbjct: 201 RQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMR--ASGCEPNFATLACFLSVSA 258
Query: 210 QVKGVKLGKAIHGYVLRHHIHLSTACG------FVICSC-----SVFNQLSTRDVVVWNS 258
+ G +H +++ + A + C C +F + D+V WN
Sbjct: 259 TESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNG 318
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------- 307
+IS V++G V AL L D+ + ++P++VT+VS+LPA L QG
Sbjct: 319 MISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNC 378
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ F+ +AL+D+Y +C A++ ++ ++ ++V + MIS Y
Sbjct: 379 VHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGY 424
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 119/278 (42%), Gaps = 28/278 (10%)
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
CV L L ++ +T+GL D + L+ Y R + + FS + +
Sbjct: 47 RGCVSPSHLSLGLQVHGRAVTAGLHA---TDTALQTRLVGMYVLARRFRDAVAVFSSLPR 103
Query: 159 KDL---VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
+ WN ++ G + G +M + P++ + V+ +CA + +
Sbjct: 104 GAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIA 163
Query: 216 LGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
LG+ +H +V I + G + + VF+ ++ RD V+WN ++ +V
Sbjct: 164 LGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYV 223
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQGLGTGSF 313
++G V A++L D+ + +PN T+ L L A+ GL +
Sbjct: 224 KAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVA 283
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
V N L+ MY +C + K+F LMP +LV+WN MIS
Sbjct: 284 VANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMIS 321
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY--- 88
+W S++ Y G +E V+L M ++G + DH + AC+ + G ++
Sbjct: 618 SWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCM 677
Query: 89 --DYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126
+Y I+ + E AC ++DL+ + G+++ L +M
Sbjct: 678 TEEYQIAPRMEHFAC----MVDLYSRAGKLDKAMELIVDM 713
>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Brachypodium distachyon]
Length = 849
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 105/363 (28%), Positives = 179/363 (49%), Gaps = 54/363 (14%)
Query: 14 CGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYK 73
C E G + W M+ G ++ + LF M G++PD +
Sbjct: 298 CLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLP 357
Query: 74 ACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN 133
A +EL ++ GK+++ Y++ C +++ FLV+
Sbjct: 358 ALTELNGFKQGKEIHGYIVR------------------NCAHVDV-----------FLVS 388
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
+L+D Y KCR ++++ F K D+V + M++GY L E + ++
Sbjct: 389 -ALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMF--RYLLALG 445
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSC 242
++PN + ++ L ACA + +++G+ +HGYVL++ + + + CG + S
Sbjct: 446 IKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSH 505
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
+F+++S +D V WNS+IS+F ++G+ +ALDL R +I+ VK N VTI S+L AC L
Sbjct: 506 YMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSACAGLP 565
Query: 303 ALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
A+ G + F +ALIDMYG+CG ++ + ++F MP KN VSWN +IS
Sbjct: 566 AIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCGNLELALRVFEHMPEKNEVSWNSIIS 625
Query: 352 VYG 354
YG
Sbjct: 626 AYG 628
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 101/397 (25%), Positives = 176/397 (44%), Gaps = 75/397 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+ LG VH G++ ++GS L++++ + W MM
Sbjct: 163 LHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDG 222
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G V LF +M G P+ C+ D G ++
Sbjct: 223 YVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQLHT---------- 272
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
L +K G ++ + V N+L+ YAKC+ L+ + F + +
Sbjct: 273 ---------LAVKYG-----------LEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRD 312
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
DLV+WN M++G G ++ L +M+ ++ +QP++++L+ +L A ++ G K GK
Sbjct: 313 DLVTWNGMISGCVQNGLVDDALRLFCDMQ--KSGLQPDSVTLASLLPALTELNGFKQGKE 370
Query: 220 IHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IHGY++R+ H+ C V + +VF+ + DVV+ +++IS +V +
Sbjct: 371 IHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRM 430
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW-----------NA 317
A+ + R ++ +KPN V + S LPAC +AA+ G +V +A
Sbjct: 431 SEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYEGRCYVESA 490
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L+DMY +CG + S +F M K+ V+WN MIS +
Sbjct: 491 LMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFA 527
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 85/331 (25%), Positives = 158/331 (47%), Gaps = 55/331 (16%)
Query: 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS 93
++M+ Y + E V +F ++ G++P+ + AC+ + R+G++++ Y++
Sbjct: 419 STMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLK 478
Query: 94 IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKF 153
+EG +C V ++L+D Y+KC L +SH F
Sbjct: 479 NAYEG-------------RC-----------------YVESALMDMYSKCGRLDLSHYMF 508
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG 213
SK+ KD V+WN+M++ +A G EE +L +MI ++ N +++S +L+ACA +
Sbjct: 509 SKMSAKDEVTWNSMISSFAQNGEPEEALDLF--RQMIMEGVKYNNVTISSILSACAGLPA 566
Query: 214 VKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISA 262
+ GK IHG +++ I + CG + + VF + ++ V WNSIISA
Sbjct: 567 IYYGKEIHGIIIKGPIRADLFAESALIDMYGKCGNLELALRVFEHMPEKNEVSWNSIISA 626
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-----TGSF---- 313
+ G V +++DLL + K + VT ++++ AC + +GL T +
Sbjct: 627 YGAHGLVKESVDLLCCMQEEGFKADHVTFLALISACAHAGQVQEGLRLFRCMTEEYHIEP 686
Query: 314 ---VWNALIDMYGRCGAIQKSRKIFVLMPHK 341
+ ++D+Y R G + K+ + MP K
Sbjct: 687 QVEHLSCMVDLYSRAGKLDKAMQFIADMPFK 717
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 121/279 (43%), Gaps = 26/279 (9%)
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
CV L L ++ +TSGL + + L+ Y R + + FS +
Sbjct: 44 RGCVAPSHLPLGLRIHARAVTSGLLDAAGPGPAALQTRLVGMYVLARRFRDAVAVFSSLP 103
Query: 158 QKDL---VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGV 214
+ + WN ++ G+ + G +M + +P+ +L V+ +CA + +
Sbjct: 104 RAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKSCAALGAL 163
Query: 215 KLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAF 263
LG+ +H YV I + G + + VF+ + RD V+WN ++ +
Sbjct: 164 HLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGY 223
Query: 264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQGLGTGS 312
V++G V A+ L R + + PN T+ L C L A+ GL
Sbjct: 224 VKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQLHTLAVKYGLEPEV 283
Query: 313 FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
V N L+ MY +C ++++ ++F LMP +LV+WN MIS
Sbjct: 284 AVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMIS 322
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 82/209 (39%), Gaps = 32/209 (15%)
Query: 177 REEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACG 236
R+ ++ E T+ P L +L C + LG IH + + + G
Sbjct: 15 RKWLSAAFSETASSATNASPCAYRLLALLRGCVAPSHLPLGLRIHARAVTSGLLDAAGPG 74
Query: 237 -----------FVIC-----SCSVFNQLS---TRDVVVWNSIISAFVRSGQVVDALDLLR 277
+V+ + +VF+ L + WN +I F +G A+
Sbjct: 75 PAALQTRLVGMYVLARRFRDAVAVFSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYV 134
Query: 278 DVIV--ANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWNALIDMYGR 324
+ ++ +P+ T+ V+ +C L AL GL +V +ALI MY
Sbjct: 135 KMWAHPSSPRPDGHTLPYVVKSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYAD 194
Query: 325 CGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G + +R++F M ++ V WNVM+ Y
Sbjct: 195 AGLLDGAREVFDGMDERDCVLWNVMMDGY 223
>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 843
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 101/345 (29%), Positives = 177/345 (51%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W M+ G+ ++ + LF M G+RPD + A ++L + GK+++ Y+
Sbjct: 315 TWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYI 374
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ C M++ FLV+ +L+D Y KCR ++++
Sbjct: 375 VR------------------NCVHMDV-----------FLVS-ALVDIYFKCRAVRMAQS 404
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+ K D+V + M++GY L G +E + +++ ++PN ++++ VL ACA +
Sbjct: 405 VYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMF--RYLLEQGIRPNAVAIASVLPACASM 462
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+KLG+ +H Y L++ + + CG + S +F+++S +D V WNS+I
Sbjct: 463 AAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMI 522
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
S+F ++G+ +AL+L R++ + VK + VTI SVL AC L A+ G +
Sbjct: 523 SSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIR 582
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
F +ALIDMYG+CG ++ + ++F MP KN VSWN +I+ YG
Sbjct: 583 ADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYG 627
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 163/331 (49%), Gaps = 55/331 (16%)
Query: 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS 93
++M+ Y + G +E V +F ++++G+RP+ V AC+ + ++G++++ Y +
Sbjct: 418 STMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALK 477
Query: 94 IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKF 153
+EG +C V ++L+D YAKC L +SH F
Sbjct: 478 NAYEG-------------RC-----------------YVESALMDMYAKCGRLDLSHYIF 507
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG 213
SKI KD V+WN+M++ +A G EE NL EM M ++ + +++S VL+ACA +
Sbjct: 508 SKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCM--EGVKYSNVTISSVLSACASLPA 565
Query: 214 VKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISA 262
+ GK IHG V++ I + CG + + VF + ++ V WNSII++
Sbjct: 566 IYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIAS 625
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-----TGSFV--- 314
+ G V +++ LLR + K + VT ++++ AC + +GL T +
Sbjct: 626 YGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAP 685
Query: 315 ----WNALIDMYGRCGAIQKSRKIFVLMPHK 341
+ ++D+Y R G + K+ ++ V MP K
Sbjct: 686 RMEHFACMVDLYSRAGKLDKAMELIVDMPFK 716
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 107/380 (28%), Positives = 180/380 (47%), Gaps = 45/380 (11%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVL-GYYEEIVNLFYLMIDKGV 61
LG VH G++ F+GS L++++ N + V G E L+ +M+D V
Sbjct: 164 LGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYV 223
Query: 62 RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC---VKRPLLDLF--IKCGRM 116
+ V A D R F AC V DLF ++ +
Sbjct: 224 KAG-----SVSSAVELFGDMRASG------CEPNFATLACFLSVSATESDLFFGVQLHTL 272
Query: 117 EITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGF 176
+ GL + + V N+L+ YAKC+ L F + + DLV+WN M++G GF
Sbjct: 273 AVKYGL----ESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGF 328
Query: 177 REEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST--- 233
++ L +M+ ++ ++P++++L +L A + G GK +HGY++R+ +H+
Sbjct: 329 VDQALLLFCDMQ--KSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLV 386
Query: 234 --------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK 285
C V + SV++ DVV+ +++IS +V +G +A+ + R ++ ++
Sbjct: 387 SALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIR 446
Query: 286 PNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKI 334
PN V I SVLPAC +AA+ G S +V +AL+DMY +CG + S I
Sbjct: 447 PNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYI 506
Query: 335 FVLMPHKNLVSWNVMISVYG 354
F + K+ V+WN MIS +
Sbjct: 507 FSKISAKDEVTWNSMISSFA 526
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 145/346 (41%), Gaps = 58/346 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMI---DKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
W ++ + G Y + LFYL + PD P V K+C+ L +G+ V+
Sbjct: 112 WNWLIRGLTMAGDYRSAL-LFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVH- 169
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
R T GL D D V ++LI YA L +
Sbjct: 170 -------------------------RTARTLGL----DGDMFVGSALIKMYANGGLLWDA 200
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + ++D V WN M+ GY G L +M + +PN +L+ L+ A
Sbjct: 201 RQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMR--ASGCEPNFATLACFLSVSA 258
Query: 210 QVKGVKLGKAIHGYVLRHHIHLSTACG------FVICSC-----SVFNQLSTRDVVVWNS 258
+ G +H +++ + A + C C +F + D+V WN
Sbjct: 259 TESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNG 318
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------- 307
+IS V++G V AL L D+ + ++P++VT+VS+LPA L QG
Sbjct: 319 MISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNC 378
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ F+ +AL+D+Y +C A++ ++ ++ ++V + MIS Y
Sbjct: 379 VHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGY 424
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 119/278 (42%), Gaps = 28/278 (10%)
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
CV L L ++ +T+GL D + L+ Y R + + FS + +
Sbjct: 47 RGCVSPSHLSLGLQVHGRAVTAGLHA---TDTALQTRLVGMYVLARRFRDAVAVFSSLPR 103
Query: 159 KDL---VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
+ WN ++ G + G +M + P++ + V+ +CA + +
Sbjct: 104 GAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIA 163
Query: 216 LGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
LG+ +H +V I + G + + VF+ ++ RD V+WN ++ +V
Sbjct: 164 LGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYV 223
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQGLGTGSF 313
++G V A++L D+ + +PN T+ L L A+ GL +
Sbjct: 224 KAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVA 283
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
V N L+ MY +C + K+F LMP +LV+WN MIS
Sbjct: 284 VANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMIS 321
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY--- 88
+W S++ Y G +E V+L M ++G + DH + AC+ + G ++
Sbjct: 618 SWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCM 677
Query: 89 --DYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126
+Y I+ + E AC ++DL+ + G+++ L +M
Sbjct: 678 TEEYQIAPRMEHFAC----MVDLYSRAGKLDKAMELIVDM 713
>gi|255540955|ref|XP_002511542.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550657|gb|EEF52144.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 434
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 182/341 (53%), Gaps = 25/341 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
+ S++ Y+ L +++ + F+ M R F P V KACS L VGK V+ ++
Sbjct: 64 YNSLISTYSKLSLHKDALKTFFSMHHSDTRLSCFTGPPVIKACSSLLAIDVGKQVHSLIV 123
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEE-MDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ N V+ L+D + K G + +F+ + +D + N LI Y+K + +
Sbjct: 124 ICGIDCNVYVQTSLMDFYAKIGELGSARKIFDGILVKDPISYNCLITGYSKAGDVIAARR 183
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + ++ +VSWNAM++ YA G E + M+ D+ PN I+L +L+ CA++
Sbjct: 184 LFDSMTERTVVSWNAMISCYAHNGDLNEGLKTFERMQ--AEDISPNEITLVTLLSICAKL 241
Query: 212 KGVKLGKAIHGYVLRHHI----HLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+++G I Y+ +++ +STA CG V + F+++ RD+V W+++I
Sbjct: 242 GDLEMGLRIKKYIEDNNLCVNMIVSTAILEMYVKCGAVDDARKEFDRMGQRDIVAWSAMI 301
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
+ + ++G+ +AL+L + VKPN VT+VSVL AC++L ++ G L
Sbjct: 302 AGYAQNGRSNEALELFECMRREKVKPNDVTLVSVLSACVQLGSVEMGNYIGSYVESQDLA 361
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ +V +AL+ MY +CG I K+R++F P K++V+WN MI
Sbjct: 362 SNVYVASALVGMYSKCGNISKAREVFGKTPQKDIVTWNSMI 402
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 121/263 (46%), Gaps = 43/263 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G E + F M + + P+ + C++L D +G + Y+
Sbjct: 195 SWNAMISCYAHNGDLNEGLKTFERMQAEDISPNEITLVTLLSICAKLGDLEMGLRIKKYI 254
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
N V +L++++KCG ++ +
Sbjct: 255 EDNNLCVNMIVSTAILEMYVKCGAVD------------------------------DARK 284
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+F ++ Q+D+V+W+AM+AGYA G E L + M + ++PN ++L VL+AC Q+
Sbjct: 285 EFDRMGQRDIVAWSAMIAGYAQNGRSNEALELFECMR--REKVKPNDVTLVSVLSACVQL 342
Query: 212 KGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
V++G I YV L ++++++A CG + + VF + +D+V WNS+I
Sbjct: 343 GSVEMGNYIGSYVESQDLASNVYVASALVGMYSKCGNISKAREVFGKTPQKDIVTWNSMI 402
Query: 261 SAFVRSGQVVDALDLLRDVIVAN 283
+G DA+ L R++ A+
Sbjct: 403 VGLAVNGFAKDAIALYRNMKEAD 425
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 73/133 (54%), Gaps = 11/133 (8%)
Query: 233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
+ G VI + +F+ ++ R VV WN++IS + +G + + L + ++ PN +T+V
Sbjct: 173 SKAGDVIAARRLFDSMTERTVVSWNAMISCYAHNGDLNEGLKTFERMQAEDISPNEITLV 232
Query: 293 SVLPACLKLAALPQGLGTGSFVWN-----------ALIDMYGRCGAIQKSRKIFVLMPHK 341
++L C KL L GL ++ + A+++MY +CGA+ +RK F M +
Sbjct: 233 TLLSICAKLGDLEMGLRIKKYIEDNNLCVNMIVSTAILEMYVKCGAVDDARKEFDRMGQR 292
Query: 342 NLVSWNVMISVYG 354
++V+W+ MI+ Y
Sbjct: 293 DIVAWSAMIAGYA 305
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 18/155 (11%)
Query: 218 KAIHGYVLRHHIHLSTACGFVICSCS-------VFNQLSTRDVVVWNSIISAFVRSGQVV 270
K IH ++ H L+T + + S +F+Q+ +++NS+IS + +
Sbjct: 19 KQIHSLIIIKHPSLATVLVRKLLNLSDIDYARQLFDQVPQPGQILYNSLISTYSKLSLHK 78
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNALI 319
DAL + ++ + + T V+ AC L A+ G S +V +L+
Sbjct: 79 DALKTFFSMHHSDTRLSCFTGPPVIKACSSLLAIDVGKQVHSLIVICGIDCNVYVQTSLM 138
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
D Y + G + +RKIF + K+ +S+N +I+ Y
Sbjct: 139 DFYAKIGELGSARKIFDGILVKDPISYNCLITGYS 173
Score = 44.7 bits (104), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 38/202 (18%), Positives = 79/202 (39%), Gaps = 50/202 (24%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ Q + +N++++ Y+ ++ M +D + + + V+ AC+ +
Sbjct: 53 FDQVPQPGQILYNSLISTYSKLSLHKDALKTF--FSMHHSDTRLSCFTGPPVIKACSSLL 110
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
+ +GK +H ++ CG C+V+ Q S D + + G++ A
Sbjct: 111 AIDVGKQVHSLIV--------ICGI---DCNVYVQTSLMDF---------YAKIGELGSA 150
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSR 332
+ ++V + +N LI Y + G + +R
Sbjct: 151 RKIFDGILVKD----------------------------PISYNCLITGYSKAGDVIAAR 182
Query: 333 KIFVLMPHKNLVSWNVMISVYG 354
++F M + +VSWN MIS Y
Sbjct: 183 RLFDSMTERTVVSWNAMISCYA 204
>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
Length = 672
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 179/329 (54%), Gaps = 30/329 (9%)
Query: 50 VNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDL 109
+ L+ +MI G+ P+ F P + K+C++ K ++ G+ ++ +++ + F+ + V L+ +
Sbjct: 60 LKLYVVMISLGLLPNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISM 119
Query: 110 FIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAML 168
+ + GR+E +F+ +D + +LI YA Y++ + F +I KD+VSWNAM+
Sbjct: 120 YAQNGRLEDAQKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMI 179
Query: 169 AGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH 228
+GYA G ++ L EM ++T+++P+ +++ V++ACAQ ++LG+ +H ++ H
Sbjct: 180 SGYAETGNYKKALELFKEM--MKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHG 237
Query: 229 -----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLR 277
I L + CG V +C + LS +DV+ WN++I + +AL L +
Sbjct: 238 FGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQ 297
Query: 278 DVIVANVKPNTVTIVSVLPACLKLAALPQG---------------LGTGSFVWNALIDMY 322
+++ + PN VT++S+LPAC L A+ G + S + +LIDMY
Sbjct: 298 EMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMY 357
Query: 323 GRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+CG I + ++ +++L +WN MI
Sbjct: 358 AKCGDIDAAPQVSDSSAFNRSLSTWNAMI 386
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 121/254 (47%), Gaps = 55/254 (21%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I + + + WN M G+AL + V+ L + MI + PN + +L +CA+ K
Sbjct: 32 FETIPEPNQLIWNIMFRGHALSS--DPVSALKLYVVMISLGLLPNFFTFPFLLKSCAKSK 89
Query: 213 GVKLGKAIHGYVLR------HHIHLS---------------------------------- 232
K G+ IHG+VL+ ++H S
Sbjct: 90 TFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTALIT 149
Query: 233 --TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
+ G++ + +F+++ +DVV WN++IS + +G AL+L ++++ NVKP+ T
Sbjct: 150 GYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDEST 209
Query: 291 IVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+ +V+ AC + ++ G G+ + NALID+Y +CG ++ + ++ +
Sbjct: 210 MATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLS 269
Query: 340 HKNLVSWNVMISVY 353
+K+++SWN +I Y
Sbjct: 270 NKDVISWNTLIGGY 283
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/342 (23%), Positives = 140/342 (40%), Gaps = 72/342 (21%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G Y++ + LF M+ V+PD V AC++ +G+ V+ ++
Sbjct: 174 SWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWI 233
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F N + N+LID Y+KC ++ +
Sbjct: 234 NDHGFGSN------------------------------LKIVNALIDLYSKCGEVETACE 263
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+ KD++SWN ++ GY +E LL EM+++ PN +++ +L ACA +
Sbjct: 264 LLEGLSNKDVISWNTLIGGYTHMNLYKEA--LLLFQEMLRSGETPNDVTMLSILPACAHL 321
Query: 212 KGVKLGKAIHGYV--------------LRHH-IHLSTACGFV-----ICSCSVFNQLSTR 251
+ +G+ IH Y+ LR I + CG + + S FN R
Sbjct: 322 GAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFN----R 377
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTG 311
+ WN++I F G+ A D+ + ++P+ +T V +L AC L LG
Sbjct: 378 SLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGML--DLGRN 435
Query: 312 SFV--------------WNALIDMYGRCGAIQKSRKIFVLMP 339
F + +ID+ G G +++ ++ MP
Sbjct: 436 IFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMP 477
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 11/125 (8%)
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ SVF + + ++WN + S V AL L +I + PN T +L +C K
Sbjct: 28 AISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAK 87
Query: 301 LAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
+G +V +LI MY + G ++ ++K+F H+++VS+ +
Sbjct: 88 SKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTAL 147
Query: 350 ISVYG 354
I+ Y
Sbjct: 148 ITGYA 152
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/397 (25%), Positives = 191/397 (48%), Gaps = 48/397 (12%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
+E G Q+H H++ G++ F+ + L++++ W ++
Sbjct: 134 LEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISA 193
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
YN +G +EE LF +M DK V P V ACS+LKD R GK V+ Y+ + K E N
Sbjct: 194 YNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESN 253
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
++ ++D++ CG M+ G+F M ++D + +++ + + V+ F K+ +
Sbjct: 254 LVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPE 313
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
KD VSW AM+ GY +E L M+ T+++P+ ++ VL ACA + ++LG+
Sbjct: 314 KDYVSWTAMIDGYIRSNRFKEALELFRNMQ--ATNVKPDEFTMVSVLTACAHLGALELGE 371
Query: 219 AIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
I Y+ R+ I + CG V + S+F ++S RD W ++I +G
Sbjct: 372 WIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNG 431
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GLGTGSFVW 315
ALD+ +++ A++ P+ +T + VL AC + + G+ +
Sbjct: 432 HGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHY 491
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMIS 351
L+D+ R G ++++ ++ MP K N + W +++
Sbjct: 492 GCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLA 528
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 169/371 (45%), Gaps = 85/371 (22%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y+ L + + V+L+ M+ +GV+PD + P ++K + G+ ++ +++
Sbjct: 86 WNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVL 145
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ N V L+ +++ CG+++ G+F+
Sbjct: 146 KHGLQYNVFVHTALVQMYLLCGQLDTARGVFD---------------------------- 177
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
+ D+++WN +++ Y G EE L ME Q + P T++L VL+AC+++K
Sbjct: 178 --VCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQ--VLPTTVTLVLVLSACSKLK 233
Query: 213 GVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ GK +H YV + ++ L A CG + + +F ++ RD++ W +I+S
Sbjct: 234 DLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVS 293
Query: 262 AF-------------------------------VRSGQVVDALDLLRDVIVANVKPNTVT 290
F +RS + +AL+L R++ NVKP+ T
Sbjct: 294 GFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFT 353
Query: 291 IVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+VSVL AC L AL G + FV NALIDMY +CG + K+ IF M
Sbjct: 354 MVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMS 413
Query: 340 HKNLVSWNVMI 350
++ +W MI
Sbjct: 414 QRDKFTWTAMI 424
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 132/309 (42%), Gaps = 62/309 (20%)
Query: 105 PLLDLFIKCGRMEITS-----GLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK--FSKIK 157
PL+ L C M+ + + ++ + ++ N ++ F Y + + F +I
Sbjct: 20 PLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIP 79
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+ +L WN M+ GY+ F + +L +EM++ ++P+ + + + ++ G
Sbjct: 80 EPNLFIWNTMIRGYSRLDFPQLGVSLY--LEMLRRGVKPDRYTFPFLFKGFTRDIALEYG 137
Query: 218 KAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
+ +HG+VL+H ++ + TA CG + + VF+ DV+ WN IISA+ +
Sbjct: 138 RQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKV 197
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------W 315
G+ ++ L + V P TVT+V VL AC KL L G S+V
Sbjct: 198 GKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLE 257
Query: 316 NALIDMYGRCGA-------------------------------IQKSRKIFVLMPHKNLV 344
NA+IDMY CG I +R F MP K+ V
Sbjct: 258 NAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYV 317
Query: 345 SWNVMISVY 353
SW MI Y
Sbjct: 318 SWTAMIDGY 326
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/397 (25%), Positives = 191/397 (48%), Gaps = 48/397 (12%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q+H H++ G++ F+ + L++++ W ++
Sbjct: 155 LEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISA 214
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
YN +G +EE LF +M DK V P V ACS+LKD R GK V+ Y+ + K E N
Sbjct: 215 YNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESN 274
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
++ ++D++ CG M+ G+F M ++D + +++ + + V+ F K+ +
Sbjct: 275 LVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPE 334
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
KD VSW AM+ GY +E L M+ T+++P+ ++ VL ACA + ++LG+
Sbjct: 335 KDYVSWTAMIDGYIRSNRFKEALELFRNMQ--ATNVKPDEFTMVSVLTACAHLGALELGE 392
Query: 219 AIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
I Y+ R+ I + CG V + S+F ++S RD W ++I +G
Sbjct: 393 WIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNG 452
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GLGTGSFVW 315
ALD+ +++ A++ P+ +T + VL AC + + G+ +
Sbjct: 453 HGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHY 512
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMIS 351
L+D+ R G ++++ ++ MP K N + W +++
Sbjct: 513 GCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLA 549
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 169/371 (45%), Gaps = 85/371 (22%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y+ L + + V+L+ M+ +GV+PD + P ++K + G+ ++ +++
Sbjct: 107 WNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVL 166
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ N V L+ +++ CG+++ G+F+
Sbjct: 167 KHGLQYNVFVHTALVQMYLLCGQLDTARGVFD---------------------------- 198
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
+ D+++WN +++ Y G EE L ME Q + P T++L VL+AC+++K
Sbjct: 199 --VCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQ--VLPTTVTLVLVLSACSKLK 254
Query: 213 GVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ GK +H YV + ++ L A CG + + +F ++ RD++ W +I+S
Sbjct: 255 DLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVS 314
Query: 262 AF-------------------------------VRSGQVVDALDLLRDVIVANVKPNTVT 290
F +RS + +AL+L R++ NVKP+ T
Sbjct: 315 GFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFT 374
Query: 291 IVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+VSVL AC L AL G + FV NALIDMY +CG + K+ IF M
Sbjct: 375 MVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMS 434
Query: 340 HKNLVSWNVMI 350
++ +W MI
Sbjct: 435 QRDKFTWTAMI 445
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 132/309 (42%), Gaps = 62/309 (20%)
Query: 105 PLLDLFIKCGRMEITS-----GLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK--FSKIK 157
PL+ L C M+ + + ++ + ++ N ++ F Y + + F +I
Sbjct: 41 PLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIP 100
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+ +L WN M+ GY+ F + +L +EM++ ++P+ + + + ++ G
Sbjct: 101 EPNLFIWNTMIRGYSRLDFPQLGVSLY--LEMLRRGVKPDRYTFPFLFKGFTRDIALEYG 158
Query: 218 KAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
+ +HG+VL+H ++ + TA CG + + VF+ DV+ WN IISA+ +
Sbjct: 159 RQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKV 218
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------W 315
G+ ++ L + V P TVT+V VL AC KL L G S+V
Sbjct: 219 GKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLE 278
Query: 316 NALIDMYGRCGA-------------------------------IQKSRKIFVLMPHKNLV 344
NA+IDMY CG I +R F MP K+ V
Sbjct: 279 NAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYV 338
Query: 345 SWNVMISVY 353
SW MI Y
Sbjct: 339 SWTAMIDGY 347
>gi|449447569|ref|XP_004141540.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71490-like [Cucumis sativus]
gi|449481506|ref|XP_004156203.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71490-like [Cucumis sativus]
Length = 712
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 107/400 (26%), Positives = 195/400 (48%), Gaps = 51/400 (12%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNV 42
G Q+H H+I G+ +FL S+L+ + C+W ++ Y
Sbjct: 98 GKQLHGHIISSGLVEDSFLVSKLVMFYSSLEFLPEAHTLVETSNLFRPCSWNILITSYVK 157
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
YE + + M+ KGVRPD+F P + KAC E ++ + G +V+ + S + V
Sbjct: 158 HKLYEAAILAYKQMVSKGVRPDNFTFPSILKACGETQNLKFGLEVHKSINSWSTPWSLFV 217
Query: 103 KRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK-- 159
L+ ++ +CG ++ LF+ M ++D + NS+I Y+ + + F ++ K
Sbjct: 218 HNALISMYGRCGEVDTARNLFDNMLERDAVSWNSMISCYSSRGMWREAFELFESMQSKCL 277
Query: 160 --DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
++V+WN + G G + LL +M + + +++ L AC+ + ++LG
Sbjct: 278 EINVVTWNIIAGGCLRVGNFTQALKLLSQMRNFGIHL--DDVAMIIGLGACSHIGAIRLG 335
Query: 218 KAIHGYVLRHHIH-LSTA----------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
K IHG+ +RH+ H LST C + + +F + + WNS++S
Sbjct: 336 KEIHGFTIRHYHHMLSTVQNALVTMYARCKDIRHAYMLFRLNDDKSRITWNSMLSGLTHL 395
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------ 314
G+V +AL L R++++ V+P+ VT S+LP C ++A L G ++
Sbjct: 396 GRVEEALCLFRELLLFGVEPDYVTFASILPLCARVADLQHGREFHCYITKHRDFRDHLLL 455
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
WNAL+DMY R G + ++++IF + K+ V++ +I+ YG
Sbjct: 456 WNALVDMYARAGKVSEAKRIFYSLSKKDEVTYTSLIAGYG 495
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/360 (22%), Positives = 157/360 (43%), Gaps = 58/360 (16%)
Query: 17 ELCAFLGSQLLEV-FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKAC 75
EL + S+ LE+ W + G +G + + + L M + G+ D AC
Sbjct: 267 ELFESMQSKCLEINVVTWNIIAGGCLRVGNFTQALKLLSQMRNFGIHLDDVAMIIGLGAC 326
Query: 76 SELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNS 135
S + R+GK+++ + I + M V N+
Sbjct: 327 SHIGAIRLGKEIHGFTIR----------------------------HYHHMLST--VQNA 356
Query: 136 LIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ 195
L+ YA+C+ ++ ++ F K ++WN+ML+G G EE L E+ + ++
Sbjct: 357 LVTMYARCKDIRHAYMLFRLNDDKSRITWNSMLSGLTHLGRVEEALCLFRELLLF--GVE 414
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIHGYVLRH-----HIHLSTA-------CGFVICSCS 243
P+ ++ + +L CA+V ++ G+ H Y+ +H H+ L A G V +
Sbjct: 415 PDYVTFASILPLCARVADLQHGREFHCYITKHRDFRDHLLLWNALVDMYARAGKVSEAKR 474
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
+F LS +D V + S+I+ + G+ A+ L ++ +KP+ +T+++VL AC
Sbjct: 475 IFYSLSKKDEVTYTSLIAGYGMQGEGGKAVRLFEEMKRFQIKPDHITMIAVLSACSHSGL 534
Query: 304 LPQ------------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMI 350
+ Q GL + + D++GR G + K+++I MP++ + W +I
Sbjct: 535 VNQAELLFAEMQSVHGLSPRLEHYACMADLFGRVGLLNKAKEIITRMPYRPTSAIWATLI 594
>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
chloroplastic [Vitis vinifera]
gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
Length = 802
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/394 (26%), Positives = 194/394 (49%), Gaps = 74/394 (18%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G +VH +I G++L ++G+ L+ ++ +W SM+ Y
Sbjct: 145 GERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPVRDLVSWNSMISGYVS 204
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+G ++ F M G++ D F + ACS R GK+++ M+ + E
Sbjct: 205 VGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLE----- 259
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
D +V SL+D YAKC + + F +I K +V
Sbjct: 260 -------------------------LDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIV 294
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+WNAM+ GY+L E + +M+ + P+ I++ +L CAQ++ + LGK++HG
Sbjct: 295 AWNAMIGGYSLNAQSFESFAYVRKMQE-GGKLHPDWITMINLLPPCAQLEAILLGKSVHG 353
Query: 223 YVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+ +R+ H+ L TA CG + + +F Q++ R+++ WN++I+++ ++G+
Sbjct: 354 FAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRK 413
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALID 320
A+ L +D+ +KP+ TI S+LPA +LA+L + L + +FV N+++
Sbjct: 414 AMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHGYVTKLKLDSNTFVSNSIVF 473
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
MYG+CG + ++R+IF M K+++SWN +I Y
Sbjct: 474 MYGKCGNLLRAREIFDRMTFKDVISWNTVIMAYA 507
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 162/344 (47%), Gaps = 55/344 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W M+ + G + + V+ ++ M GVR D+F P V KAC L D G+ V+ +I
Sbjct: 94 WNVMIRGFVDNGLFWDAVDFYHRMEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVI 153
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
SGL D D + NSLI YAK ++ +
Sbjct: 154 K--------------------------SGL----DLDIYIGNSLIIMYAKIGCIESAEMV 183
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ +DLVSWN+M++GY G + EM+ + ++ + S+ G+L AC+
Sbjct: 184 FREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQ--ASGIKLDRFSVIGILGACSLEG 241
Query: 213 GVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ GK IH ++R + L CG + + +F+Q++ + +V WN++I
Sbjct: 242 FLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIG 301
Query: 262 AFVRSGQVVDALDLLRDVIV-ANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------- 313
+ + Q ++ +R + + P+ +T++++LP C +L A+ G F
Sbjct: 302 GYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGFL 361
Query: 314 ----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ AL+DMYG CG ++ + +F M +NL+SWN MI+ Y
Sbjct: 362 PHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASY 405
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/331 (21%), Positives = 147/331 (44%), Gaps = 56/331 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M+G Y++ E M + G + PD + C++L+ +GK V+ +
Sbjct: 296 WNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFA 355
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I F P L ++ +L+D Y +C LK + C
Sbjct: 356 IRNGF-------LPHL-----------------------VLETALVDMYGECGKLKPAEC 385
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +++L+SWNAM+A Y G + L ++ ++P+ +++ +L A A++
Sbjct: 386 LFGQMNERNLISWNAMIASYTKNGENRKAMTLF--QDLCNKTLKPDATTIASILPAYAEL 443
Query: 212 KGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSII 260
++ + IHGYV + + +T CG ++ + +F++++ +DV+ WN++I
Sbjct: 444 ASLREAEQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISWNTVI 503
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------L 308
A+ G +++L ++ +PN T VS+L +C + +G +
Sbjct: 504 MAYAIHGFGRISIELFSEMREKGFEPNGSTFVSLLLSCSVAGLVNEGWEYFNSMKRDYNI 563
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
G + ++D+ GR G + ++ MP
Sbjct: 564 NPGIEHYGCILDLIGRTGNLDHAKNFIEEMP 594
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 121/277 (43%), Gaps = 33/277 (11%)
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDF------YAKCRYLKVSHCKFSKIKQ 158
P DL +K I + +Q FLV + + Y + Y+K + F ++Q
Sbjct: 32 PDTDLILKP---RIFKTARSKRNQSFLVERNSVSLTRALSSYVERGYMKNALDLFENMRQ 88
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
D WN M+ G+ G + + ME ++ + + V+ AC + + G+
Sbjct: 89 CDTFIWNVMIRGFVDNGLFWDAVDFYHRMEF--GGVRGDNFTYPFVIKACGGLYDLAEGE 146
Query: 219 AIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
+HG V++ + L G + + VF ++ RD+V WNS+IS +V G
Sbjct: 147 RVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPVRDLVSWNSMISGYVSVG 206
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWN 316
+L R++ + +K + +++ +L AC L G L V
Sbjct: 207 DGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQT 266
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+L+DMY +CG + + ++F + K++V+WN MI Y
Sbjct: 267 SLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGY 303
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 73/178 (41%), Gaps = 32/178 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G + + LF + +K ++PD + A +EL R + ++ Y+
Sbjct: 397 SWNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHGYV 456
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+K + N V ++ ++ KCG + +F+ M
Sbjct: 457 TKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRM------------------------- 491
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
KD++SWN ++ YA+ GF L EM + +PN + +L +C+
Sbjct: 492 -----TFKDVISWNTVIMAYAIHGFGRISIELFSEMR--EKGFEPNGSTFVSLLLSCS 542
>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
Length = 672
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 97/347 (27%), Positives = 182/347 (52%), Gaps = 35/347 (10%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M + + + L+ MI G+ P+ + P + K+C++ K G+ ++ +++
Sbjct: 33 WNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAKSKALIEGQQIHGHVL 92
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHC 151
+ ++ + V L+ ++ + GR+E +F+ +V+ +LI YA Y+ +
Sbjct: 93 KLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITGYASRGYINNARK 152
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME----MIQTDMQPNTISLSGVLAA 207
F +I KD+VSWNAM++GY E N + +E M++T+++P+ ++ V++A
Sbjct: 153 LFDEISVKDVVSWNAMISGYV------ETCNFKEALELYKDMMKTNVKPDESTMVTVVSA 206
Query: 208 CAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVW 256
CAQ ++LG+ +H ++ H I L + CG V +C +F L+ +DV+ W
Sbjct: 207 CAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISW 266
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP----------- 305
N++I +AL L ++++ + PN VT++SVLPAC L A+
Sbjct: 267 NTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINK 326
Query: 306 --QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+G+ S + +LIDMY +CG I+ ++++F M ++L SWN MI
Sbjct: 327 RLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMI 373
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/335 (23%), Positives = 144/335 (42%), Gaps = 61/335 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y ++E + L+ M+ V+PD V AC++ +G+ ++ ++
Sbjct: 164 SWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWI 223
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F N IK + N LID Y+KC ++ +
Sbjct: 224 EDHGFGSN-----------IK-------------------IVNVLIDLYSKCGEVETACG 253
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +KD++SWN ++ G+ +E LL EM+++ PN +++ VL ACA +
Sbjct: 254 LFQGLAKKDVISWNTLIGGHTHMNLYKEA--LLLFQEMLRSGESPNDVTMLSVLPACAHL 311
Query: 212 KGVKLGKAIHGYV-------------LRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ +G+ IH Y+ L I + CG + + VF+ + TR + WN+
Sbjct: 312 GAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNA 371
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV---- 314
+I F G+ A DL + + P+ +T V +L AC L LG F
Sbjct: 372 MIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLD--LGRHIFRSMSQ 429
Query: 315 ----------WNALIDMYGRCGAIQKSRKIFVLMP 339
+ +ID+ G CG ++++++ MP
Sbjct: 430 DYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMP 464
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 124/251 (49%), Gaps = 55/251 (21%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I++ +L+ WN M G+AL + VT L + MI + PN+ S +L +CA+ K
Sbjct: 22 FETIQEPNLLIWNTMFRGHALNS--DSVTALKLYVCMISLGLLPNSYSFPFLLKSCAKSK 79
Query: 213 GVKLGKAIHGYVLR---------------------------------HHIHLST------ 233
+ G+ IHG+VL+ H H+ +
Sbjct: 80 ALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALIT 139
Query: 234 ---ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
+ G++ + +F+++S +DVV WN++IS +V + +AL+L +D++ NVKP+ T
Sbjct: 140 GYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDEST 199
Query: 291 IVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+V+V+ AC + ++ G G+ + N LID+Y +CG ++ + +F +
Sbjct: 200 MVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLA 259
Query: 340 HKNLVSWNVMI 350
K+++SWN +I
Sbjct: 260 KKDVISWNTLI 270
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 11/123 (8%)
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
S+F + ++++WN++ + V AL L +I + PN+ + +L +C K
Sbjct: 20 SIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAKSK 79
Query: 303 ALPQG---------LG--TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
AL +G LG +V +LI MY + G ++ + K+F H+++VS+ +I+
Sbjct: 80 ALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALIT 139
Query: 352 VYG 354
Y
Sbjct: 140 GYA 142
>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330-like [Cucumis
sativus]
Length = 712
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 103/347 (29%), Positives = 174/347 (50%), Gaps = 36/347 (10%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ Y G + + F M+ G+ PDH V P V K+C+ L D +G+ ++ Y+I
Sbjct: 74 WKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYII 133
Query: 93 SIKFEGNACVKRPLLDLFIK------CGRMEITSG-LFEEMDQDFLVNNSLIDFYAKCRY 145
+ + + L++++ K GR + +G +F+EM + + + ++
Sbjct: 134 RVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRT-VSVLSEDSV 192
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
K+ F + +KDLVSWN ++AG A G EE ++ EM +++P++ +LS VL
Sbjct: 193 RKI----FEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMG--GANLKPDSFTLSSVL 246
Query: 206 AACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVV 254
A+ + GK IHG YV I + C V SC VF L+ RD +
Sbjct: 247 PLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGI 306
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL---------- 304
WNSII+ V++G + L R +++A +KP + + S++PAC L L
Sbjct: 307 SWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYI 366
Query: 305 -PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
G F+ ++L+DMY +CG I+ +++IF M +++VSW MI
Sbjct: 367 TRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMI 413
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 144/323 (44%), Gaps = 55/323 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ G YEE + + M ++PD F V +E D GK+++
Sbjct: 206 SWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIH--- 262
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
C R + +D D V +SLID YAKC + S
Sbjct: 263 --------GCSIR-------------------QGLDADIYVASSLIDMYAKCTRVADSCR 295
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ + ++D +SWN+++AG G +E +M M + ++P + S S ++ ACA +
Sbjct: 296 VFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAK--IKPKSYSFSSIMPACAHL 353
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ LGK +HGY+ R+ + + CG + + +F+++ RD+V W ++I
Sbjct: 354 TTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMI 413
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GL 308
GQ DA++L + +KPN V ++VL AC + + G+
Sbjct: 414 MGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGI 473
Query: 309 GTGSFVWNALIDMYGRCGAIQKS 331
G + A+ D+ GR G ++++
Sbjct: 474 APGVEHYAAVSDLLGRAGRLEEA 496
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 115/253 (45%), Gaps = 56/253 (22%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+ I ++W +++ Y G + +L + M+ + + P+ VL +CA +
Sbjct: 63 FNTIHFPPALAWKSVIRCYTSHGLPHQ--SLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSC------------------SVFNQLSTR--- 251
+ LG+++HGY++R + G + + VF++++ R
Sbjct: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180
Query: 252 ----------------------DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289
D+V WN+II+ R+G + L ++R++ AN+KP++
Sbjct: 181 VRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSF 240
Query: 290 TIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLM 338
T+ SVLP + ++ QGL +V ++LIDMY +C + S ++F L+
Sbjct: 241 TLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLL 300
Query: 339 PHKNLVSWNVMIS 351
++ +SWN +I+
Sbjct: 301 TERDGISWNSIIA 313
>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 705
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 103/347 (29%), Positives = 174/347 (50%), Gaps = 36/347 (10%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ Y G + + F M+ G+ PDH V P V K+C+ L D +G+ ++ Y+I
Sbjct: 74 WKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYII 133
Query: 93 SIKFEGNACVKRPLLDLFIK------CGRMEITSG-LFEEMDQDFLVNNSLIDFYAKCRY 145
+ + + L++++ K GR + +G +F+EM + + + ++
Sbjct: 134 RVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRT-VSVLSEDSV 192
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
K+ F + +KDLVSWN ++AG A G EE ++ EM +++P++ +LS VL
Sbjct: 193 RKI----FEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMG--GANLKPDSFTLSSVL 246
Query: 206 AACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVV 254
A+ + GK IHG YV I + C V SC VF L+ RD +
Sbjct: 247 PLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGI 306
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL---------- 304
WNSII+ V++G + L R +++A +KP + + S++PAC L L
Sbjct: 307 SWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYI 366
Query: 305 -PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
G F+ ++L+DMY +CG I+ +++IF M +++VSW MI
Sbjct: 367 TRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMI 413
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/323 (23%), Positives = 140/323 (43%), Gaps = 62/323 (19%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ G YEE + + M ++PD F V +E D GK+++
Sbjct: 206 SWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIH--- 262
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
C R + +D D V +SLID YAKC + S
Sbjct: 263 --------GCSIR-------------------QGLDADIYVASSLIDMYAKCTRVADSCR 295
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ + ++D +SWN+++AG G +E +M M + ++P + S S ++ ACA +
Sbjct: 296 VFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAK--IKPKSYSFSSIMPACAHL 353
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ LGK +HGY+ R+ + + CG + + +F+++ RD+V W ++I
Sbjct: 354 TTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMI 413
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GL 308
GQ DA++L + +K +VL AC + + G+
Sbjct: 414 MGCALHGQAPDAIELFEQMETEGIK-------AVLTACSHGGLVDEAWKYFNSMTRDFGI 466
Query: 309 GTGSFVWNALIDMYGRCGAIQKS 331
G + A+ D+ GR G ++++
Sbjct: 467 APGVEHYAAVSDLLGRAGRLEEA 489
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 115/253 (45%), Gaps = 56/253 (22%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+ I ++W +++ Y G + +L + M+ + + P+ VL +CA +
Sbjct: 63 FNTIHFPPALAWKSVIRCYTSHGLPHQ--SLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSC------------------SVFNQLSTR--- 251
+ LG+++HGY++R + G + + VF++++ R
Sbjct: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180
Query: 252 ----------------------DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289
D+V WN+II+ R+G + L ++R++ AN+KP++
Sbjct: 181 VRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSF 240
Query: 290 TIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLM 338
T+ SVLP + ++ QGL +V ++LIDMY +C + S ++F L+
Sbjct: 241 TLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLL 300
Query: 339 PHKNLVSWNVMIS 351
++ +SWN +I+
Sbjct: 301 TERDGISWNSIIA 313
>gi|255582620|ref|XP_002532091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528238|gb|EEF30293.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 446
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 164/337 (48%), Gaps = 54/337 (16%)
Query: 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
G+ Y + L+Y M G++P++F P ++ +C+ L G+ + ++ + F
Sbjct: 100 GLTTTWRNYSLAIQLYYQMKSLGLKPNNFTFPFLFISCANLVALHCGQIAHSLVLKMGF- 158
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
+ D +N+SLI YAKC L + F +I
Sbjct: 159 -----------------------------NNDSHINHSLITMYAKCSKLDSARKVFDEIL 189
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
++D+VSWN+M++GY GF E L MEM + +P ++L +L AC + + LG
Sbjct: 190 ERDIVSWNSMISGYTKMGFAREAVRLF--MEMREQGFEPVEMTLVSILGACGDLGDLALG 247
Query: 218 K-----------AIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
K ++ Y I + CG ++ + VF+ ++ +D+V WN++I+ + ++
Sbjct: 248 KWVEALIGDKKMELNSYTASALIDMYGKCGDLMSARRVFDNMAEKDIVTWNAMITGYAQN 307
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVW 315
G +A+ L + A + PN +T+V VL AC + AL +GL +V
Sbjct: 308 GASDEAMTLFNVMREAGITPNEITMVVVLSACASIGALDLGKWVEMYASQRGLQHDVYVA 367
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+AL+DMY +CG++ + ++F MPHKN VSWN MIS
Sbjct: 368 SALVDMYAKCGSLDNALRVFENMPHKNEVSWNAMISA 404
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 132/279 (47%), Gaps = 44/279 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y +G+ E V LF M ++G P + AC +L D +GK V
Sbjct: 195 SWNSMISGYTKMGFAREAVRLFMEMREQGFEPVEMTLVSILGACGDLGDLALGKWV---- 250
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ I +ME+ S ++LID Y KC L +
Sbjct: 251 ----------------EALIGDKKMELNS----------YTASALIDMYGKCGDLMSARR 284
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +KD+V+WNAM+ GYA G +E L + M + + PN I++ VL+ACA +
Sbjct: 285 VFDNMAEKDIVTWNAMITGYAQNGASDEAMTLFNVMR--EAGITPNEITMVVVLSACASI 342
Query: 212 KGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ LGK + Y L+H +++++A CG + + VF + ++ V WN++I
Sbjct: 343 GALDLGKWVEMYASQRGLQHDVYVASALVDMYAKCGSLDNALRVFENMPHKNEVSWNAMI 402
Query: 261 SAFVRSGQVVDALDLLRDVIV-ANVKPNTVTIVSVLPAC 298
SA G+ +AL L ++ + V+PN +T + V AC
Sbjct: 403 SALAFHGRAREALSLFSRMLNGSTVRPNDITFIGVFAAC 441
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 110/224 (49%), Gaps = 23/224 (10%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+++ + ++N M+ G +R + +M ++PN + + +CA +
Sbjct: 83 FTQMPNPNDYAFNVMIRGLTTT-WRNYSLAIQLYYQMKSLGLKPNNFTFPFLFISCANLV 141
Query: 213 GVKLGKAIHGYVLR------HHIHLSTACGFVICSC-----SVFNQLSTRDVVVWNSIIS 261
+ G+ H VL+ HI+ S + CS VF+++ RD+V WNS+IS
Sbjct: 142 ALHCGQIAHSLVLKMGFNNDSHINHSLITMYAKCSKLDSARKVFDEILERDIVSWNSMIS 201
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGT 310
+ + G +A+ L ++ +P +T+VS+L AC L L G +
Sbjct: 202 GYTKMGFAREAVRLFMEMREQGFEPVEMTLVSILGACGDLGDLALGKWVEALIGDKKMEL 261
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
S+ +ALIDMYG+CG + +R++F M K++V+WN MI+ Y
Sbjct: 262 NSYTASALIDMYGKCGDLMSARRVFDNMAEKDIVTWNAMITGYA 305
>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 161/315 (51%), Gaps = 54/315 (17%)
Query: 60 GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEIT 119
G++P++ P ++ ACS L L ++ GRM
Sbjct: 122 GLKPNNLTYPFLFIACSNL------------------------------LAVENGRMGHC 151
Query: 120 SGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREE 179
S + +D+D V++SLI YA+C + + F +I QKDLVSWN+M++GY+ E
Sbjct: 152 SVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGE 211
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----------- 228
L EM++ QPN +SL VL AC ++ +KLG + +V+ +
Sbjct: 212 AVGLF--REMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSAL 269
Query: 229 IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288
IH+ CG ++ + +F+ + +D V WN++I+ + ++G +A+ L +D+ +++ P+
Sbjct: 270 IHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQ 329
Query: 289 VTIVSVLPACLKLAAL-----------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVL 337
+T++ +L AC + AL +G +V AL+DMY +CG++ + ++F
Sbjct: 330 ITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYG 389
Query: 338 MPHKNLVSWNVMISV 352
MP+KN VSWN MIS
Sbjct: 390 MPNKNEVSWNAMISA 404
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/335 (27%), Positives = 158/335 (47%), Gaps = 57/335 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y+ + + E V LF M++ G +P+ V AC EL D ++G V +++
Sbjct: 195 SWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFV 254
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ K M ++ + ++LI Y KC L +
Sbjct: 255 VENK------------------------------MTLNYFMGSALIHMYGKCGDLVSARR 284
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +K+KD V+WNAM+ GYA G EE L +M M T P+ I+L G+L+ACA +
Sbjct: 285 IFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSST--APDQITLIGILSACASI 342
Query: 212 KGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ LGK + Y + +++ TA CG + + VF + ++ V WN++I
Sbjct: 343 GALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNAMI 402
Query: 261 SAFVRSGQVVDALDLLRDVIV--ANVKPNTVTIVSVLPACLKLAALPQG-----LGTGSF 313
SA GQ +AL L + ++ V PN +T V VL AC+ + +G + + SF
Sbjct: 403 SALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSF 462
Query: 314 -------VWNALIDMYGRCGAIQKSRKIFVLMPHK 341
++ ++D++ R G ++++ + MP K
Sbjct: 463 GLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEK 497
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 121/244 (49%), Gaps = 25/244 (10%)
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVT-NLLDEMEMIQT 192
NS + A + + FS I S+N M+ G + + + M+ +
Sbjct: 64 NSFLYKIADLKDFAYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFL-- 121
Query: 193 DMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI----HLSTA-------CGFVICS 241
++PN ++ + AC+ + V+ G+ H V+R + H+S + CG + +
Sbjct: 122 GLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDA 181
Query: 242 CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
VF+++S +D+V WNS+IS + + +A+ L R+++ A +PN +++VSVL AC +L
Sbjct: 182 RKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGEL 241
Query: 302 AALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
L G FV +ALI MYG+CG + +R+IF M K+ V+WN MI
Sbjct: 242 GDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMI 301
Query: 351 SVYG 354
+ Y
Sbjct: 302 TGYA 305
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/321 (23%), Positives = 122/321 (38%), Gaps = 73/321 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
++LG V ++ + L F+GS L+ ++ W +M+
Sbjct: 244 LKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITG 303
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G EE + LF M PD + AC+ + +GK V Y F+
Sbjct: 304 YAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQ-- 361
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D V +L+D YAKC L + F + K
Sbjct: 362 ----------------------------DDVYVGTALVDMYAKCGSLDNAFRVFYGMPNK 393
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+ VSWNAM++ A G +E L M + PN I+ GVL+AC V G+
Sbjct: 394 NEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRR 453
Query: 220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
+ H+ +S++ G V + ++ ++ F R+G + +A D V
Sbjct: 454 L------FHM-MSSSFGLV------------PKIEHYSCMVDLFSRAGHLEEAWDF---V 491
Query: 280 IVANVKPNTVTIVSVLPACLK 300
+ KP+ V + ++L AC K
Sbjct: 492 MTMPEKPDEVILGALLGACQK 512
>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g40720-like [Vitis vinifera]
Length = 854
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 108/360 (30%), Positives = 175/360 (48%), Gaps = 63/360 (17%)
Query: 25 QLLEVFCN-----WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK 79
QL E N W SM+ Y G +EE ++LF M +GV+ D + C EL
Sbjct: 311 QLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELA 370
Query: 80 DYRV-GKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLID 138
+ GK ++ ++I K G M D + N+L+
Sbjct: 371 SGLLKGKSLHAHVI-------------------KSG-----------MRIDASLGNALLS 400
Query: 139 FYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT 198
Y + ++ F ++K D++SWN M+ A R + L + M +++++PN+
Sbjct: 401 MYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMR--ESEIKPNS 458
Query: 199 ISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH----LSTA-------CGFVICSCSVFNQ 247
++ +LAAC V + G++IHGYV++H I L TA CG + +F
Sbjct: 459 YTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGDEATARDLFEG 518
Query: 248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
RD++ WN++I+++V++ Q AL LL +++ +PN+VTI++VL + LA LPQG
Sbjct: 519 CPDRDLISWNAMIASYVKNNQAHKAL-LLFHRMISEAEPNSVTIINVLSSFTHLATLPQG 577
Query: 308 -------------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
LG + NA I MY RCG++Q + IF +P +N++SWN MI+ YG
Sbjct: 578 QSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGYG 637
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 167/345 (48%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ L + I++ + M GV P++ P V KAC+ GK ++
Sbjct: 20 HWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSIHR-- 77
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+G L+D D V +++DFY KC +++ + C
Sbjct: 78 ---SIQGT-----DLMD--------------------DVRVGTAVVDFYCKCGFVEDARC 109
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +D+V WNAM+ GY G EE L+ EM + +++PN+ ++ +L AC
Sbjct: 110 VFDAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMG--RENLRPNSRTMVALLLACEGA 167
Query: 212 KGVKLGKAIHGYVLRHHI-----HLSTA-CGFVI-----CSCSVFNQLSTRDVVVWNSII 260
++LG+ +HGY LR+ + H++TA GF + +F+ + R++V WN++I
Sbjct: 168 SELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRFDMRVLPLLFDLMVVRNIVSWNAMI 227
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-------- 312
S + G AL+L ++V VK + VT++ + AC +L +L G
Sbjct: 228 SGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFV 287
Query: 313 ---FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
++ NAL++MY G+++ S ++F +P+++ WN MIS Y
Sbjct: 288 EDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYA 332
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 86/395 (21%), Positives = 163/395 (41%), Gaps = 80/395 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G +HAH+I G+ + A LG+ LL ++ +W +M+
Sbjct: 376 GKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALAR 435
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+ LF M + ++P+ + + AC ++ G+ ++ Y++ E N +
Sbjct: 436 NTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPL 495
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+ L D+++ CG LFE +DL+
Sbjct: 496 RTALADMYMNCGDEATARDLFE------------------------------GCPDRDLI 525
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SWNAM+A Y + L M ++ +PN++++ VL++ + + G+++H
Sbjct: 526 SWNAMIASYVKNNQAHKALLLFHRM---ISEAEPNSVTIINVLSSFTHLATLPQGQSLHA 582
Query: 223 YVLRH-------------HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
YV R I + CG + + ++F L R+++ WN++I+ + +G+
Sbjct: 583 YVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGYGMNGRG 642
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-----------TGSFV-WNA 317
DA+ ++ +PN VT VSVL AC + GL T V ++
Sbjct: 643 SDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQLFHSMVQDFNVTPELVHYSC 702
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMIS 351
++D+ R G I ++R+ MP + S W ++S
Sbjct: 703 IVDLLARGGCIDEAREFIDSMPIEPDASVWRALLS 737
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 115/223 (51%), Gaps = 26/223 (11%)
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG 213
+KI+ KD WN+++ A + + + +ME + + PN +L VL ACA
Sbjct: 11 TKIQIKDPKHWNSVIKHQANLKNDQAILSAYTQMESL--GVLPNNTTLPLVLKACAAQNA 68
Query: 214 VKLGKAIH----GYVLRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISA 262
V+ GK+IH G L + + TA CGFV + VF+ +S RDVV+WN+++
Sbjct: 69 VERGKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYG 128
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF--------- 313
+V G +A+ L+R++ N++PN+ T+V++L AC + L G G +
Sbjct: 129 YVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDS 188
Query: 314 ---VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V ALI Y R ++ +F LM +N+VSWN MIS Y
Sbjct: 189 NPHVATALIGFYLRFD-MRVLPLLFDLMVVRNIVSWNAMISGY 230
>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 609
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 98/329 (29%), Positives = 167/329 (50%), Gaps = 53/329 (16%)
Query: 46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP 105
Y ++L++ M + P++F P V+ AC+ L++ R+ + + C
Sbjct: 98 YPLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAH------------C---- 141
Query: 106 LLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWN 165
++F K G +D D NS++ Y +C V+ F +I +KDLVSWN
Sbjct: 142 --EVF-KLG-----------LDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWN 187
Query: 166 AMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL 225
++L+GYA GF E + + ++ +P+ +SL VL AC ++ ++LG+ + G+V+
Sbjct: 188 SLLSGYAKLGFAREAVEVFGRLRE-ESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVV 246
Query: 226 RHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALD 274
I + + CG ++ S +F+ + +RD + WN+ ISA+ ++G +A+
Sbjct: 247 ERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAIS 306
Query: 275 LLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYG 323
L + V PN VT+ +VL AC + AL +GL FV ALIDMY
Sbjct: 307 LFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYA 366
Query: 324 RCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+CG+++ ++++F MP KN SWN MIS
Sbjct: 367 KCGSLESAQRVFNDMPRKNDASWNAMISA 395
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 85/336 (25%), Positives = 150/336 (44%), Gaps = 58/336 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLF-YLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W S++ Y LG+ E V +F L + G PD V AC EL D +G+ V +
Sbjct: 185 SWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGF 244
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
++ + N+ + ++LI Y+KC L S
Sbjct: 245 VVERGMKVNS------------------------------YIGSALISMYSKCGELVSSR 274
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + +D ++WNA ++ YA G +E +L M+ + + PN ++L+ VL+ACA
Sbjct: 275 RIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMK--ENGVDPNKVTLTAVLSACAS 332
Query: 211 VKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ + LGK + Y L+H I ++TA CG + + VFN + ++ WN++
Sbjct: 333 IGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAM 392
Query: 260 ISAFVRSGQVVDALDLLRDVIV--ANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV--- 314
ISA G+ +AL L + + +PN +T VS+L AC+ + +G +
Sbjct: 393 ISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTL 452
Query: 315 ---------WNALIDMYGRCGAIQKSRKIFVLMPHK 341
++ ++D+ R G + ++ + MP K
Sbjct: 453 FGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEK 488
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 100/192 (52%), Gaps = 27/192 (14%)
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR------HH-----IHLSTACG 236
+M ++ PN + V ACA ++ +++ + H V + HH + + CG
Sbjct: 107 QMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCG 166
Query: 237 FVICSCSVFNQLSTRDVVVWNSIISAFVRSG---QVVDALDLLRDVIVANVKPNTVTIVS 293
+ VF++++ +D+V WNS++S + + G + V+ LR+ + +P+ +++VS
Sbjct: 167 ENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREE--SGFEPDEMSLVS 224
Query: 294 VLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
VL AC +L L +G+ S++ +ALI MY +CG + SR+IF MP ++
Sbjct: 225 VLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRD 284
Query: 343 LVSWNVMISVYG 354
++WN IS Y
Sbjct: 285 FITWNAAISAYA 296
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/321 (22%), Positives = 130/321 (40%), Gaps = 73/321 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEV---------------------FCNWTSMMGM 39
+ELG V ++ G+++ +++GS L+ + F W + +
Sbjct: 235 LELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISA 294
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G +E ++LF+ M + GV P+ V AC+ + +GK + +Y
Sbjct: 295 YAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEY--------- 345
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ D V +LID YAKC L+ + F+ + +K
Sbjct: 346 ---------------------ATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRK 384
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+ SWNAM++ A G +E +L + M +PN I+ +L+AC V G
Sbjct: 385 NDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSAC-----VHAGLV 439
Query: 220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
GY R +ST G V + ++ ++ R+G + +A D++ +
Sbjct: 440 DEGY--RLFDMMSTLFGLV------------PKIEHYSCMVDLLSRAGHLYEAWDVIEKM 485
Query: 280 IVANVKPNTVTIVSVLPACLK 300
KP+ VT+ ++ AC +
Sbjct: 486 ---PEKPDNVTLGALHSACQR 503
>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 160/315 (50%), Gaps = 54/315 (17%)
Query: 60 GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEIT 119
G++P++ P ++ ACS L L ++ GRM
Sbjct: 122 GLKPNNLTYPFLFIACSNL------------------------------LAVENGRMGHC 151
Query: 120 SGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREE 179
S + +D+D V++SLI YA+C + + F +I QKDLVSWN+M++GY+ E
Sbjct: 152 SVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGE 211
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----------- 228
L EM++ QPN +SL VL AC ++ +KLG + +V+ +
Sbjct: 212 AVGLF--REMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSAL 269
Query: 229 IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288
IH+ CG ++ + +F+ + +D V WN++I+ + ++G +A+ L +D+ +++ P+
Sbjct: 270 IHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQ 329
Query: 289 VTIVSVLPACLKLAAL-----------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVL 337
+T++ +L AC + AL +G +V AL+DMY +CG++ + ++F
Sbjct: 330 ITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYG 389
Query: 338 MPHKNLVSWNVMISV 352
MP KN VSWN MIS
Sbjct: 390 MPKKNEVSWNAMISA 404
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/335 (27%), Positives = 158/335 (47%), Gaps = 57/335 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y+ + + E V LF M++ G +P+ V AC EL D ++G V +++
Sbjct: 195 SWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFV 254
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ K M ++ + ++LI Y KC L +
Sbjct: 255 VENK------------------------------MTLNYFMGSALIHMYGKCGDLVSARR 284
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +K+KD V+WNAM+ GYA G EE L +M M T P+ I+L G+L+ACA +
Sbjct: 285 IFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSST--APDQITLIGILSACASI 342
Query: 212 KGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ LGK + Y + +++ TA CG + + VF + ++ V WN++I
Sbjct: 343 GALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNAMI 402
Query: 261 SAFVRSGQVVDALDLLRDVIV--ANVKPNTVTIVSVLPACLKLAALPQG-----LGTGSF 313
SA GQ +AL L + ++ V PN +T V VL AC+ + +G + + SF
Sbjct: 403 SALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSF 462
Query: 314 -------VWNALIDMYGRCGAIQKSRKIFVLMPHK 341
++ ++D++ R G ++++ + MP K
Sbjct: 463 GLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEK 497
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 121/244 (49%), Gaps = 25/244 (10%)
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVT-NLLDEMEMIQT 192
NS + A + + FS I S+N M+ G + + + M+ +
Sbjct: 64 NSFLYKIADLKDFAYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFL-- 121
Query: 193 DMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI----HLSTA-------CGFVICS 241
++PN ++ + AC+ + V+ G+ H V+R + H+S + CG + +
Sbjct: 122 GLKPNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDA 181
Query: 242 CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
VF+++S +D+V WNS+IS + + +A+ L R+++ A +PN +++VSVL AC +L
Sbjct: 182 RKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGEL 241
Query: 302 AALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
L G FV +ALI MYG+CG + +R+IF M K+ V+WN MI
Sbjct: 242 GDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMI 301
Query: 351 SVYG 354
+ Y
Sbjct: 302 TGYA 305
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/321 (23%), Positives = 123/321 (38%), Gaps = 73/321 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
++LG V ++ + L F+GS L+ ++ W +M+
Sbjct: 244 LKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITG 303
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G EE + LF M PD + AC+ + +GK V Y F+
Sbjct: 304 YAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQ-- 361
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D V +L+D YAKC L + F + +K
Sbjct: 362 ----------------------------DDVYVGTALVDMYAKCGSLDNAFRVFYGMPKK 393
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+ VSWNAM++ A G +E L M + PN I+ GVL+AC V G+
Sbjct: 394 NEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRR 453
Query: 220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
+ H+ +S++ G V + ++ ++ F R+G + +A D V
Sbjct: 454 L------FHM-MSSSFGLV------------PKIEHYSCMVDLFSRAGHLEEAWDF---V 491
Query: 280 IVANVKPNTVTIVSVLPACLK 300
+ KP+ V + ++L AC K
Sbjct: 492 MTMPEKPDEVILGALLGACQK 512
>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 702
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 98/329 (29%), Positives = 167/329 (50%), Gaps = 53/329 (16%)
Query: 46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP 105
Y ++L++ M + P++F P V+ AC+ L++ R+ + + C
Sbjct: 98 YPLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAH------------C---- 141
Query: 106 LLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWN 165
++F K G +D D NS++ Y +C V+ F +I +KDLVSWN
Sbjct: 142 --EVF-KLG-----------LDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWN 187
Query: 166 AMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL 225
++L+GYA GF E + + ++ +P+ +SL VL AC ++ ++LG+ + G+V+
Sbjct: 188 SLLSGYAKLGFAREAVEVFGRLRE-ESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVV 246
Query: 226 RHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALD 274
I + + CG ++ S +F+ + +RD + WN+ ISA+ ++G +A+
Sbjct: 247 ERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAIS 306
Query: 275 LLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYG 323
L + V PN VT+ +VL AC + AL +GL FV ALIDMY
Sbjct: 307 LFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYA 366
Query: 324 RCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+CG+++ ++++F MP KN SWN MIS
Sbjct: 367 KCGSLESAQRVFNDMPRKNDASWNAMISA 395
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 85/336 (25%), Positives = 150/336 (44%), Gaps = 58/336 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLF-YLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W S++ Y LG+ E V +F L + G PD V AC EL D +G+ V +
Sbjct: 185 SWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGF 244
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
++ + N+ + ++LI Y+KC L S
Sbjct: 245 VVERGMKVNS------------------------------YIGSALISMYSKCGELVSSR 274
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + +D ++WNA ++ YA G +E +L M+ + + PN ++L+ VL+ACA
Sbjct: 275 RIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMK--ENGVDPNKVTLTAVLSACAS 332
Query: 211 VKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ + LGK + Y L+H I ++TA CG + + VFN + ++ WN++
Sbjct: 333 IGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAM 392
Query: 260 ISAFVRSGQVVDALDLLRDVIV--ANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV--- 314
ISA G+ +AL L + + +PN +T VS+L AC+ + +G +
Sbjct: 393 ISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTL 452
Query: 315 ---------WNALIDMYGRCGAIQKSRKIFVLMPHK 341
++ ++D+ R G + ++ + MP K
Sbjct: 453 FGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEK 488
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 100/192 (52%), Gaps = 27/192 (14%)
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR------HH-----IHLSTACG 236
+M ++ PN + V ACA ++ +++ + H V + HH + + CG
Sbjct: 107 QMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCG 166
Query: 237 FVICSCSVFNQLSTRDVVVWNSIISAFVRSG---QVVDALDLLRDVIVANVKPNTVTIVS 293
+ VF++++ +D+V WNS++S + + G + V+ LR+ + +P+ +++VS
Sbjct: 167 ENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREE--SGFEPDEMSLVS 224
Query: 294 VLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
VL AC +L L +G+ S++ +ALI MY +CG + SR+IF MP ++
Sbjct: 225 VLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRD 284
Query: 343 LVSWNVMISVYG 354
++WN IS Y
Sbjct: 285 FITWNAAISAYA 296
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/321 (22%), Positives = 130/321 (40%), Gaps = 73/321 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEV---------------------FCNWTSMMGM 39
+ELG V ++ G+++ +++GS L+ + F W + +
Sbjct: 235 LELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISA 294
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G +E ++LF+ M + GV P+ V AC+ + +GK + +Y
Sbjct: 295 YAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEY--------- 345
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ D V +LID YAKC L+ + F+ + +K
Sbjct: 346 ---------------------ATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRK 384
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+ SWNAM++ A G +E +L + M +PN I+ +L+AC V G
Sbjct: 385 NDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSAC-----VHAGLV 439
Query: 220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
GY R +ST G V + ++ ++ R+G + +A D++ +
Sbjct: 440 DEGY--RLFDMMSTLFGLV------------PKIEHYSCMVDLLSRAGHLYEAWDVIEKM 485
Query: 280 IVANVKPNTVTIVSVLPACLK 300
KP+ VT+ ++ AC +
Sbjct: 486 ---PEKPDNVTLGALHSACQR 503
>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
Length = 670
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 94/343 (27%), Positives = 181/343 (52%), Gaps = 27/343 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M + + + L+ MI G+ P+ + P + K+C++LK + G ++ +++
Sbjct: 31 WNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKLKASKEGLQIHGHVL 90
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHC 151
+ +E + V L+ ++++ R+E +F+ +D + +L+ YA Y++ +
Sbjct: 91 KLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTGYASRGYIESARN 150
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I KD+VSWNAM++GY G +E L EM ++T+++P+ ++ V++A A+
Sbjct: 151 MFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEM--MKTNVRPDESTMVTVISASARS 208
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++LG+ +H ++ H I + CG + +C +F LS +DV+ WN +I
Sbjct: 209 GSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILI 268
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-------------QG 307
+ +AL L ++++ + PN VT++S+L AC L A+ +G
Sbjct: 269 GGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKG 328
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ S + +LIDMY +CG I+ + ++F M HK+L +WN MI
Sbjct: 329 VTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMI 371
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 128/254 (50%), Gaps = 55/254 (21%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I++ +L+ WN M G+AL + V+ L + MI + PN+ + +L +CA++K
Sbjct: 20 FETIQEPNLLIWNTMFRGHALSP--DPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKLK 77
Query: 213 GVKLGKAIHGYVLRH------HIHLS---------------------------------- 232
K G IHG+VL+ ++H S
Sbjct: 78 ASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVT 137
Query: 233 --TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
+ G++ + ++F+++ +DVV WN++IS +V +G +AL+L ++++ NV+P+ T
Sbjct: 138 GYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDEST 197
Query: 291 IVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+V+V+ A + ++ G G+ + NALID Y +CG ++ + +F+ +
Sbjct: 198 MVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLS 257
Query: 340 HKNLVSWNVMISVY 353
+K+++SWN++I Y
Sbjct: 258 YKDVISWNILIGGY 271
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 126/289 (43%), Gaps = 45/289 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G Y+E + LF M+ VRPD V A + +G+ V+ ++
Sbjct: 162 SWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWI 221
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F N + N+LIDFY+KC ++ +
Sbjct: 222 ADHGFGSN------------------------------LKIVNALIDFYSKCGEMETACG 251
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + KD++SWN ++ GY +E LL EM+++ PN +++ +L ACA +
Sbjct: 252 LFLGLSYKDVISWNILIGGYTHLNLYKEA--LLLFQEMLRSGESPNDVTMLSILHACAHL 309
Query: 212 KGVKLGKAIHGYV------------LRHH-IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ +G+ IH Y+ LR I + + CG + + VFN + + + WN+
Sbjct: 310 GAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNA 369
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
+I F G+ A D+ + +KP+ +T V +L AC L G
Sbjct: 370 MIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLG 418
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 39/210 (18%)
Query: 13 VCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVY 72
CG+ FLG +V +W ++G Y L Y+E + LF M+ G P+ +
Sbjct: 249 ACGL----FLGLSYKDVI-SWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSIL 303
Query: 73 KACSELKDYRVGKDVYDYMISIKFEG--NACVKRPLLDLFIKCGRMEITSGLFEEMDQDF 130
AC+ L +G+ ++ Y I + +G NA R
Sbjct: 304 HACAHLGAIDIGRWIHVY-IDKRLKGVTNASSLR-------------------------- 336
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
SLID Y+KC ++ +H F+ + K L +WNAM+ G+A+ G ++ M
Sbjct: 337 ---TSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMR-- 391
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+ +++P+ I+ G+L+AC+ + LG+ I
Sbjct: 392 KNEIKPDDITFVGLLSACSHAGMLDLGRHI 421
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 11/123 (8%)
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
SVF + ++++WN++ S V AL L +I + PN+ T +L +C KL
Sbjct: 18 SVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKLK 77
Query: 303 ALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
A +GL +V +LI MY + ++ + K+F H+++VS+ +++
Sbjct: 78 ASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVT 137
Query: 352 VYG 354
Y
Sbjct: 138 GYA 140
>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
Length = 736
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 98/353 (27%), Positives = 168/353 (47%), Gaps = 58/353 (16%)
Query: 28 EVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDK---GVRPDHFVCPKVYKACSELKDYRVG 84
+ W +++ Y+ G + + ++ M+ K G++PD ACS + D G
Sbjct: 123 KTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQG 182
Query: 85 KDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCR 144
+++ ++ + D +V N+LI+ Y+KC
Sbjct: 183 REIEARTVASGYA------------------------------SDSIVQNALINMYSKCG 212
Query: 145 YLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGV 204
L+ + F ++K +D+++WN M++GYA G + L M D +PN ++ G+
Sbjct: 213 SLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMG--PNDPKPNVVTFIGL 270
Query: 205 LAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVI------CSCS------VFNQLSTRD 252
L AC ++ ++ G+AIH V H G V+ CS S VF +L TRD
Sbjct: 271 LTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRD 330
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS 312
V+ WN +I A+V+ GQ DALD+ + + + NV PN +T+ +VL AC L A QG +
Sbjct: 331 VITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHA 390
Query: 313 FVW-----------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ N+L++MY RCG++ + +F + K+LVSW+ +I+ Y
Sbjct: 391 LIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYA 443
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 88/346 (25%), Positives = 169/346 (48%), Gaps = 53/346 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT ++ + G+Y E + + M+ +G+RPD + CS KD + G+ ++ +
Sbjct: 25 SWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGVCSSSKDLKQGQLLHAMI 84
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + ++ D ++ +LI YA+CR L+++
Sbjct: 85 LETQL-----------------------------LEFDIILGTALITMYARCRDLELARK 115
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNTISLSGVLAACAQ 210
F ++ +K LV+WNA++AGY+ G + +M + M+P+ I+ S L AC+
Sbjct: 116 TFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSV 175
Query: 211 VKGVKLGKAIH------GY-----VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
V + G+ I GY V I++ + CG + + VF++L RDV+ WN++
Sbjct: 176 VGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTM 235
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG---------- 309
IS + + G AL+L + + + KPN VT + +L AC L L QG
Sbjct: 236 ISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGY 295
Query: 310 -TGSFVWNALIDMYGRC-GAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ + N L++MY +C +++++R++F + +++++WN++I Y
Sbjct: 296 ESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAY 341
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 116/242 (47%), Gaps = 28/242 (11%)
Query: 139 FYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT 198
Y KC + + F I+ + VSW ++A +A G E M+ ++P+
Sbjct: 1 MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYY--RRMVLEGLRPDG 58
Query: 199 ISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----IHLSTACGFVICSC-------SVFN 246
+ C+ K +K G+ +H +L I L TA + C F+
Sbjct: 59 AMFVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFD 118
Query: 247 QLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN---VKPNTVTIVSVLPACLKLAA 303
++ + +V WN++I+ + R+G AL + +D++ + +KP+ +T S L AC +
Sbjct: 119 EMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGD 178
Query: 304 LPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+ Q G + S V NALI+MY +CG+++ +RK+F + ++++++WN MIS
Sbjct: 179 ISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISG 238
Query: 353 YG 354
Y
Sbjct: 239 YA 240
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/343 (20%), Positives = 151/343 (44%), Gaps = 55/343 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y G + + LF M +P+ + AC+ L+D G+ ++ +
Sbjct: 232 WNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVK 291
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+E + + LL+++ KC S EE Q
Sbjct: 292 EHGYESDLVIGNVLLNMYTKC------SSSLEEARQ-----------------------V 322
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F +++ +D+++WN ++ Y G ++ ++ +M++ ++ PN I+LS VL+ACA +
Sbjct: 323 FERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQL--ENVAPNEITLSNVLSACAVLG 380
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ GKA+H + +++ CG + + VF + + +V W+++I+
Sbjct: 381 AKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIA 440
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTG-SFVWNA--- 317
A+ + G L+ +++ + + VT+VS L AC L +G+ + S V +
Sbjct: 441 AYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLA 500
Query: 318 --------LIDMYGRCGAIQKSRKIFVLMPH-KNLVSWNVMIS 351
++D+ R G ++ + + MP + V+W ++S
Sbjct: 501 PDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLS 543
>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Glycine max]
Length = 727
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 106/392 (27%), Positives = 186/392 (47%), Gaps = 75/392 (19%)
Query: 6 QVHAHLIVCGVELCAFL----------------GSQLLEVFCN-----WTSMMGMYNVLG 44
Q+H L++ G++ FL +L + FC W +++ Y+
Sbjct: 74 QIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNN 133
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
Y + V ++ M GV PD F P V KAC+EL D+ G +C+
Sbjct: 134 MYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDF----------------GLSCI-- 175
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
+ IK G D V N L+ YAKC ++ V+ F + + +VSW
Sbjct: 176 -IHGQIIKYG-----------FGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSW 223
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
++++GYA G E + +M ++P+ I+L +L A V ++ G++IHG+V
Sbjct: 224 TSIISGYAQNGKAVEALRMFSQMR--NNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFV 281
Query: 225 LRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
++ + A CG V + S F+Q+ T +V++WN++IS + ++G +A+
Sbjct: 282 IKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAV 341
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMY 322
+L +I N+KP++VT+ S + A ++ +L G+ FV +LIDMY
Sbjct: 342 NLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMY 401
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+CG+++ +R++F K++V W+ MI YG
Sbjct: 402 AKCGSVEFARRVFDRNSDKDVVMWSAMIMGYG 433
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 162/344 (47%), Gaps = 55/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTS++ Y G E + +F M + GV+PD + +A +++ D G+ ++ ++
Sbjct: 222 SWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFV 281
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + E P L + SL FYAKC + V+
Sbjct: 282 IKMGLE-----DEPALLI-------------------------SLTAFYAKCGLVTVAKS 311
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++K +++ WNAM++GYA G EE NL M I +++P+++++ + A AQV
Sbjct: 312 FFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYM--ISRNIKPDSVTVRSAVLASAQV 369
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++L + + YV + + I + CG V + VF++ S +DVV+W+++I
Sbjct: 370 GSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMI 429
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
+ GQ +A++L + A V PN VT + +L AC + +G +
Sbjct: 430 MGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCMKDFEIV 489
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMISV 352
+ ++ ++D+ GR G + ++ + +P + VS W ++S
Sbjct: 490 PRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSA 533
>gi|347954532|gb|AEP33766.1| organelle transcript processing 82, partial [Lepidium virginicum]
Length = 464
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/343 (27%), Positives = 178/343 (51%), Gaps = 27/343 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M + + + L+ MI G+ P+ + P + K+C++ K +R G+ ++ +++
Sbjct: 41 WNTMFRGHALNSDSVSALKLYVCMISLGLLPNSYSFPFLLKSCAKSKAFREGQQIHGHVV 100
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHC 151
+ ++ + V L+ ++ + GR+E +F+ +V+ +LI YA Y K +
Sbjct: 101 KLGYDLDMYVHTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITGYASRGYTKSARK 160
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I KD+VSWNAM++GY +E L EM ++T+++P+ ++ V++ACAQ
Sbjct: 161 LFDEILVKDIVSWNAMISGYVETFNYKEALELYKEM--VKTNVKPDESTMVTVVSACAQS 218
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++LG+ +H + H + + + CG + +C +F L +D + WN++I
Sbjct: 219 SNIELGRQVHSLIEDHGFGSNLKVVNALMDMYSKCGEMETACRLFQGLVNKDAISWNTLI 278
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-------------QG 307
+AL L ++++ + PN VT++SVL AC L A+ +G
Sbjct: 279 GGHTHMNLYKEALFLFQEMLRSGESPNDVTMLSVLSACAHLGAIDIGRWIHVYIDKRLKG 338
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ S + +LIDMY +CG I+ + ++F M ++L SWN MI
Sbjct: 339 VTNSSSLRTSLIDMYAKCGDIEAASQVFDSMLARSLSSWNAMI 381
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 124/251 (49%), Gaps = 55/251 (21%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I++ +L+ WN M G+AL + V+ L + MI + PN+ S +L +CA+ K
Sbjct: 30 FETIEEPNLLIWNTMFRGHALNS--DSVSALKLYVCMISLGLLPNSYSFPFLLKSCAKSK 87
Query: 213 GVKLGKAIHGYVLR------HHIHLS---------------------------------- 232
+ G+ IHG+V++ ++H S
Sbjct: 88 AFREGQQIHGHVVKLGYDLDMYVHTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALIT 147
Query: 233 --TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
+ G+ + +F+++ +D+V WN++IS +V + +AL+L ++++ NVKP+ T
Sbjct: 148 GYASRGYTKSARKLFDEILVKDIVSWNAMISGYVETFNYKEALELYKEMVKTNVKPDEST 207
Query: 291 IVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+V+V+ AC + + + G G+ V NAL+DMY +CG ++ + ++F +
Sbjct: 208 MVTVVSACAQSSNIELGRQVHSLIEDHGFGSNLKVVNALMDMYSKCGEMETACRLFQGLV 267
Query: 340 HKNLVSWNVMI 350
+K+ +SWN +I
Sbjct: 268 NKDAISWNTLI 278
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 141/331 (42%), Gaps = 57/331 (17%)
Query: 26 LLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGK 85
L++ +W +M+ Y Y+E + L+ M+ V+PD V AC++ + +G+
Sbjct: 166 LVKDIVSWNAMISGYVETFNYKEALELYKEMVKTNVKPDESTMVTVVSACAQSSNIELGR 225
Query: 86 DVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRY 145
V+ + F N V N+L+D Y+KC
Sbjct: 226 QVHSLIEDHGFGSN------------------------------LKVVNALMDMYSKCGE 255
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
++ + F + KD +SWN ++ G+ +E L EM +++ PN +++ VL
Sbjct: 256 METACRLFQGLVNKDAISWNTLIGGHTHMNLYKEALFLFQEM--LRSGESPNDVTMLSVL 313
Query: 206 AACAQVKGVKLGKAIHGYV------------LRHH-IHLSTACGFVICSCSVFNQLSTRD 252
+ACA + + +G+ IH Y+ LR I + CG + + VF+ + R
Sbjct: 314 SACAHLGAIDIGRWIHVYIDKRLKGVTNSSSLRTSLIDMYAKCGDIEAASQVFDSMLARS 373
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS 312
+ WN++I F G+ A DL + + ++P+ +T V +L AC L G S
Sbjct: 374 LSSWNAMIFGFAMHGKANAAFDLFSKMRKSGIEPDDITFVGLLSACSHSGMLDLGRHIFS 433
Query: 313 FV------------WNALIDMYGRCGAIQKS 331
+ + +ID+ G+C +++
Sbjct: 434 SMTQDYKITPKLEHYGCMIDLLGQCALFKEA 464
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 11/123 (8%)
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
SVF + ++++WN++ + V AL L +I + PN+ + +L +C K
Sbjct: 28 SVFETIEEPNLLIWNTMFRGHALNSDSVSALKLYVCMISLGLLPNSYSFPFLLKSCAKSK 87
Query: 303 ALPQG---------LG--TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
A +G LG +V +LI MY + G ++ + K+F H+++VS+ +I+
Sbjct: 88 AFREGQQIHGHVVKLGYDLDMYVHTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALIT 147
Query: 352 VYG 354
Y
Sbjct: 148 GYA 150
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/371 (26%), Positives = 176/371 (47%), Gaps = 85/371 (22%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y+ +G V+++ M+++GV PD + P + K + + G++++D+++
Sbjct: 87 WNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIV 146
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ F N V+ L+ L+ G + + G+F+
Sbjct: 147 KLGFSSNVFVQNALIHLYSLSGEVSVARGVFD---------------------------- 178
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
+ + D+V+WN M++GY +E L DEME ++ + P++I+L VL+AC+++K
Sbjct: 179 --RSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMR--VLPSSITLVSVLSACSKLK 234
Query: 213 GVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ +GK +H YV I + ACG + + +F+ + +RDV+ W +I++
Sbjct: 235 DLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVT 294
Query: 262 AFVRSGQV-------------------------------VDALDLLRDVIVANVKPNTVT 290
F GQV + L L R++ AN+KP+ T
Sbjct: 295 GFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFT 354
Query: 291 IVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+VS+L AC L AL G + SFV NALIDMY CG ++K+ +IF MP
Sbjct: 355 MVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMP 414
Query: 340 HKNLVSWNVMI 350
H++ +SW +I
Sbjct: 415 HRDKISWTAVI 425
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/393 (24%), Positives = 183/393 (46%), Gaps = 48/393 (12%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G ++H H++ G F+ + L+ ++ W M+ YN
Sbjct: 138 GRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNR 197
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
++E + LF M V P V ACS+LKD VGK V+ Y+ +K E +
Sbjct: 198 SKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVL 257
Query: 103 KRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ L+D++ CG M+ G+F+ M +D + +++ + + ++ F K+ ++D
Sbjct: 258 ENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDF 317
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSW AM+ GY +EV +L EM+ +++P+ ++ +L ACA + ++LG+ I
Sbjct: 318 VSWTAMIDGYLQVNRFKEVLSLFREMQ--AANIKPDEFTMVSILTACAHLGALELGEWIK 375
Query: 222 GYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y+ ++ I + + CG V + +FN + RD + W ++I +G
Sbjct: 376 AYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGE 435
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GLGTGSFVWNAL 318
+ALD+ ++ A++ P+ VT + VL AC + + G+ + +
Sbjct: 436 EALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCM 495
Query: 319 IDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMI 350
+D+ GR G ++++ ++ MP K N + W ++
Sbjct: 496 VDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLL 528
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 24/210 (11%)
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
WN M+ GY+ G ++ EM++ + P+ + +L + VK G+ +H +
Sbjct: 87 WNNMIKGYSRVGCPNSAVSMY--CEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDH 144
Query: 224 VLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
+++ IHL + G V + VF++ S DVV WN +IS + RS Q ++
Sbjct: 145 IVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDES 204
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNALIDM 321
+ L ++ V P+++T+VSVL AC KL L G +V NALIDM
Sbjct: 205 MKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDM 264
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
Y CG + + IF M ++++SW +++
Sbjct: 265 YAACGDMDTALGIFDNMKSRDVISWTAIVT 294
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 116/269 (43%), Gaps = 54/269 (20%)
Query: 30 FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
F +WT+M+ Y + ++E+++LF M ++PD F + AC+ L +G+ +
Sbjct: 317 FVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKA 376
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
Y+ E+ D V N+LID Y C ++ +
Sbjct: 377 YIDK------------------------------NEIKIDSFVGNALIDMYFNCGNVEKA 406
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F+ + +D +SW A++ G A+ G+ EE ++ +M ++ + P+ ++ GVL AC
Sbjct: 407 IRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQM--LKASITPDEVTCIGVLCACT 464
Query: 210 QVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
V GK + H G +V + ++ R+G +
Sbjct: 465 HSGMVDKGKKFFARMTTQH-------GI------------EPNVAHYGCMVDLLGRAGHL 505
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+A ++++++ VKPN++ S+L AC
Sbjct: 506 KEAHEVIKNM---PVKPNSIVWGSLLGAC 531
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
VF+ + + VWN++I + R G A+ + +++ V P+ T +L + A
Sbjct: 75 VFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTA 134
Query: 304 LP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+ G + FV NALI +Y G + +R +F ++V+WNVMIS
Sbjct: 135 VKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISG 194
Query: 353 Y 353
Y
Sbjct: 195 Y 195
>gi|255540507|ref|XP_002511318.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550433|gb|EEF51920.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 441
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 114/395 (28%), Positives = 188/395 (47%), Gaps = 86/395 (21%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLE----------------VFCN--------WTSMMGMYN 41
QVHAHL+ L + + LLE +F N + M+ +
Sbjct: 43 QVHAHLLKTRRHLDSTVTENLLESAAIILPATTMEYALSIFDNIDGPDSSAYNIMIRAFT 102
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+ ++ + F M+++ V D F P KACS L+ + GK ++ ++ F G+ C
Sbjct: 103 LKRSPQKALAFFKQMLEEAVAFDEFTFPCTLKACSRLRGRKEGKQIHAQIVKYGF-GSNC 161
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ V N+LI YA C ++++ F + ++D+
Sbjct: 162 I-----------------------------VLNTLIHMYANCGEIEIARNMFDGMSERDI 192
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
+WN+M +GY G+ E+ L +EM + N I+L VLAAC ++ V+LG+ I
Sbjct: 193 FAWNSMFSGYVKSGYYEDTVRLFEEMRELGVGF--NDITLISVLAACGRLADVELGEWIA 250
Query: 222 GYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
YV L +++L TA CG V + +F+Q+ RDVV W+++IS + ++ +
Sbjct: 251 KYVRVNGLDRNMNLVTALVDMYAKCGEVDKARRLFDQMDGRDVVAWSAMISGYSQARRCQ 310
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW--------------- 315
+A+DL ++ +AN+ PN VT+VSVL C L A LGTG ++
Sbjct: 311 EAVDLFNEMQMANLDPNEVTMVSVLSCCAALGA----LGTGKWIHLYIKRKGMNLTVTLG 366
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
AL+D YG+CG + + ++F LMP KN+ SW +I
Sbjct: 367 TALVDFYGKCGLVDSAIEVFQLMPVKNVYSWTALI 401
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 132/285 (46%), Gaps = 44/285 (15%)
Query: 21 FLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD 80
F G ++F W SM Y GYYE+ V LF M + GV + V AC L D
Sbjct: 184 FDGMSERDIFA-WNSMFSGYVKSGYYEDTVRLFEEMRELGVGFNDITLISVLAACGRLAD 242
Query: 81 YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFY 140
+G+ + Y ++ G +D++ + +L+D Y
Sbjct: 243 VELGEWIAKY---VRVNG---------------------------LDRNMNLVTALVDMY 272
Query: 141 AKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTIS 200
AKC + + F ++ +D+V+W+AM++GY+ +E +L +EM+M D PN ++
Sbjct: 273 AKCGEVDKARRLFDQMDGRDVVAWSAMISGYSQARRCQEAVDLFNEMQMANLD--PNEVT 330
Query: 201 LSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLS 249
+ VL+ CA + + GK IH Y+ R ++L+ CG V + VF +
Sbjct: 331 MVSVLSCCAALGALGTGKWIHLYIKRKGMNLTVTLGTALVDFYGKCGLVDSAIEVFQLMP 390
Query: 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV 294
++V W ++I +GQ AL+ + + +NV+PN V ++ V
Sbjct: 391 VKNVYSWTALIQGLANNGQGKRALEYYQLMRESNVEPNDVWLMKV 435
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 24/223 (10%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I D ++N M+ + L R L +M++ + + + L AC++++
Sbjct: 83 FDNIDGPDSSAYNIMIRAFTLK--RSPQKALAFFKQMLEEAVAFDEFTFPCTLKACSRLR 140
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
G K GK IH ++++ IH+ CG + + ++F+ +S RD+ WNS+ S
Sbjct: 141 GRKEGKQIHAQIVKYGFGSNCIVLNTLIHMYANCGEIEIARNMFDGMSERDIFAWNSMFS 200
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW------ 315
+V+SG D + L ++ V N +T++SVL AC +LA + G +V
Sbjct: 201 GYVKSGYYEDTVRLFEEMRELGVGFNDITLISVLAACGRLADVELGEWIAKYVRVNGLDR 260
Query: 316 -----NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
AL+DMY +CG + K+R++F M +++V+W+ MIS Y
Sbjct: 261 NMNLVTALVDMYAKCGEVDKARRLFDQMDGRDVVAWSAMISGY 303
>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 169/320 (52%), Gaps = 27/320 (8%)
Query: 56 MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR 115
M+ KGV+P+ F V KAC+ + GK ++Y+I + FE + V+ L+ ++ +CG
Sbjct: 1 MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60
Query: 116 MEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALG 174
+E +F++M ++ N++I +A+ R +K + F ++ ++D+VSW A++AGYA
Sbjct: 61 LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120
Query: 175 GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA 234
G+ +E N+ ++M +T M+ + + VL+ACA + ++LG+ H YV++ L
Sbjct: 121 GYGDESLNVFNQMR--KTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIV 178
Query: 235 CGFVIC-----------SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283
G + +C VF+++ R+ V WNSII+ + G+ DA+ L ++ A
Sbjct: 179 VGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAG 238
Query: 284 VKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKS 331
+KPN ++ V VL AC + +G G + + + +ID+ GR G + ++
Sbjct: 239 IKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEA 298
Query: 332 RKIFVLMPHKNLVS-WNVMI 350
MP + VS W ++
Sbjct: 299 ENFINGMPVEPDVSVWGALL 318
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 100/216 (46%), Gaps = 53/216 (24%)
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGF 237
M+ ++PN +LS V+ ACA + ++ GK H Y+++ +H+ CG
Sbjct: 1 MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60
Query: 238 VICSCSVFN-------------------------------QLSTRDVVVWNSIISAFVRS 266
+ + VF+ ++S RDVV W ++I+ + ++
Sbjct: 61 LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------W 315
G ++L++ + +K + + SVL AC LAAL G ++V
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVG 180
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+AL+DMY + G+++ + ++F MP +N VSWN +I+
Sbjct: 181 SALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIIT 216
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 32/188 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+++ Y GY +E +N+F M G++ D F+ V AC++L +G+ + Y+
Sbjct: 109 SWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYV 168
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F + V L+D++ K G ME +F++M
Sbjct: 169 VQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKM------------------------- 203
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
Q++ VSWN+++ G A G + L + +M+Q ++PN IS GVL+AC+
Sbjct: 204 -----PQRNEVSWNSIITGCAQHGRGNDAVLLFE--QMLQAGIKPNEISFVGVLSACSHT 256
Query: 212 KGVKLGKA 219
V G+
Sbjct: 257 GLVNEGRG 264
>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
from Arabidopsis thaliana BAC F28A21 gi|T04867 and
contains multiple PPR PF|01535 repeats. EST gb|AI999742
comes from this gene. This gene may be cut off, partial
[Arabidopsis thaliana]
Length = 757
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 114/432 (26%), Positives = 204/432 (47%), Gaps = 87/432 (20%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCNW---------------------TSMMGMYNVLG 44
Q HA ++ G + ++ ++L+ + N+ +S++
Sbjct: 36 QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
+ + + +F M G+ PD V P ++K C+EL ++VGK ++ + +A V+
Sbjct: 96 LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQG 155
Query: 105 PLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLK-----VSHCKFSKIKQ 158
+ ++++CGRM +F+ M D+D + ++L+ YA+ L+ +S + S I +
Sbjct: 156 SMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGI-E 214
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
++VSWN +L+G+ G+ +E + ++ + P+ +++S VL + + + +G+
Sbjct: 215 ANIVSWNGILSGFNRSGYHKEAVVMFQKIHHL--GFCPDQVTVSSVLPSVGDSEMLNMGR 272
Query: 219 AIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRD--------------- 252
IHGYV++ I + G V S+FNQ +
Sbjct: 273 LIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNG 332
Query: 253 --------------------VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
VV W SII+ ++G+ ++AL+L R++ VA VKPN VTI
Sbjct: 333 LVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIP 392
Query: 293 SVLPACLKLAALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMPHK 341
S+LPAC +AAL G T F V +ALIDMY +CG I S+ +F +MP K
Sbjct: 393 SMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTK 452
Query: 342 NLVSWNVMISVY 353
NLV WN +++ +
Sbjct: 453 NLVCWNSLMNGF 464
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 162/336 (48%), Gaps = 30/336 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W ++ +N GY++E V +F + G PD V + + + +G+ ++ Y+
Sbjct: 219 SWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYV 278
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSH 150
I + CV ++D++ K G + LF + + + V N+ I ++ + +
Sbjct: 279 IKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKAL 338
Query: 151 CKFSKIKQK----DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
F K++ ++VSW +++AG A G E L EM++ ++PN +++ +L
Sbjct: 339 EMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQV--AGVKPNHVTIPSMLP 396
Query: 207 ACAQVKGVKLGKAIHGYVLRHH----IHLSTA-------CGFVICSCSVFNQLSTRDVVV 255
AC + + G++ HG+ +R H +H+ +A CG + S VFN + T+++V
Sbjct: 397 ACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVC 456
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC------------LKLAA 303
WNS+++ F G+ + + + ++ +KP+ ++ S+L AC K+ +
Sbjct: 457 WNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMS 516
Query: 304 LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
G+ ++ ++++ GR G +Q++ + MP
Sbjct: 517 EEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMP 552
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 93/202 (46%), Gaps = 33/202 (16%)
Query: 11 LIVCGVELCAFLGSQLLEV-FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCP 69
L+ +E+ Q +E+ +WTS++ G E + LF M GV+P+H P
Sbjct: 333 LVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIP 392
Query: 70 KVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQD 129
+ AC + G+ + + + + N V L+D++ KCGR
Sbjct: 393 SMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGR-------------- 438
Query: 130 FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
+ +S F+ + K+LV WN+++ G+++ G +EV ++ + +
Sbjct: 439 ----------------INLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFE--SL 480
Query: 190 IQTDMQPNTISLSGVLAACAQV 211
++T ++P+ IS + +L+AC QV
Sbjct: 481 MRTRLKPDFISFTSLLSACGQV 502
>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g23330
gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 715
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 109/352 (30%), Positives = 179/352 (50%), Gaps = 42/352 (11%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ + + + + F M G PDH V P V K+C+ + D R G+ V+ +++
Sbjct: 73 WKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIV 132
Query: 93 SIKFEGNACVKRPLLDLFIKCGRM--EITSG-LFEEM--------DQDFLVNNSLIDF-Y 140
+ + + L++++ K M +I+ G +F+EM D+D ++ F
Sbjct: 133 RLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGI 192
Query: 141 AKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTIS 200
R + F + +KD+VS+N ++AGYA G E+ ++ EM TD++P++ +
Sbjct: 193 DSVRRV------FEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGT--TDLKPDSFT 244
Query: 201 LSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVIC-----------SCSVFNQLS 249
LS VL ++ V GK IHGYV+R I G + S VF++L
Sbjct: 245 LSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLY 304
Query: 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA------ 303
RD + WNS+++ +V++G+ +AL L R ++ A VKP V SV+PAC LA
Sbjct: 305 CRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQ 364
Query: 304 -----LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
L G G+ F+ +AL+DMY +CG I+ +RKIF M + VSW +I
Sbjct: 365 LHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAII 416
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 142/303 (46%), Gaps = 47/303 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
++ +++ Y G YE+ + + M ++PD F V SE D GK+++ Y+
Sbjct: 209 SYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYV 268
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + +D D + +SL+D YAK ++ S
Sbjct: 269 IR------------------------------KGIDSDVYIGSSLVDMYAKSARIEDSER 298
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS++ +D +SWN+++AGY G E L +M+ ++P ++ S V+ ACA +
Sbjct: 299 VFSRLYCRDGISWNSLVAGYVQNGRYNEALRLF--RQMVTAKVKPGAVAFSSVIPACAHL 356
Query: 212 KGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ LGK +HGYVLR +I +++A CG + + +F++++ D V W +II
Sbjct: 357 ATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAII 416
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALID 320
G +A+ L ++ VKPN V V+VL AC + + + G +N++
Sbjct: 417 MGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWG----YFNSMTK 472
Query: 321 MYG 323
+YG
Sbjct: 473 VYG 475
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 100/229 (43%), Gaps = 53/229 (23%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G ++H ++I G++ ++GS L++++ +W S++ Y
Sbjct: 261 GKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQ 320
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G Y E + LF M+ V+P V AC+ L +GK ++ Y++ F N +
Sbjct: 321 NGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFI 380
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L+D++ KCG ++ +F+ M N L D V
Sbjct: 381 ASALVDMYSKCGNIKAARKIFDRM-------NVL-----------------------DEV 410
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
SW A++ G+AL G E +L +EM+ + ++PN ++ VL AC+ V
Sbjct: 411 SWTAIIMGHALHGHGHEAVSLFEEMK--RQGVKPNQVAFVAVLTACSHV 457
>gi|225434871|ref|XP_002280683.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Vitis vinifera]
Length = 545
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 110/383 (28%), Positives = 178/383 (46%), Gaps = 84/383 (21%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G +HAHL++ G+ + ++L+ + W + G
Sbjct: 46 GRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACAR 105
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G+YEE ++ F M +G+RP+ FV P + KAC L D R G++++ ++ FE +A +
Sbjct: 106 RGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYI 165
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L+ ++ KCG +E CR F I KDLV
Sbjct: 166 ISALIYMYSKCGHVE-----------------------KACRV-------FDWIVDKDLV 195
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
NAM++GYA GF E NL+ +M+ Q ++PN +S + ++A +QV K++
Sbjct: 196 VMNAMVSGYAQHGFVHEALNLVQKMQ--QAGVKPNVVSWNTLIAGFSQVGD----KSMVS 249
Query: 223 YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
V R L TA G DVV W S+IS FV++ + D ++++
Sbjct: 250 EVFR----LMTANGV------------EPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQ 293
Query: 283 NVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKS 331
P++VTI S+LPAC +A L G + +V +AL+DMY +CG I ++
Sbjct: 294 GFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEA 353
Query: 332 RKIFVLMPHKNLVSWNVMISVYG 354
+ +F +MP +N V+WN +I Y
Sbjct: 354 KILFYMMPERNTVTWNSLIFGYA 376
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 91/189 (48%), Gaps = 32/189 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTS++ + + E + F M+D+G P + AC+ + + R GK+++ Y
Sbjct: 266 SWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYA 325
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ I E +D V ++L+D YAKC Y+ +
Sbjct: 326 MVIGVE------------------------------KDVYVRSALVDMYAKCGYISEAKI 355
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +++ V+WN+++ GYA G+ E L ++ME ++D + + ++ + VL AC+
Sbjct: 356 LFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQME--ESDTKLDHLTFTAVLNACSHA 413
Query: 212 KGVKLGKAI 220
V+LG+++
Sbjct: 414 GMVELGESL 422
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 30/149 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G ++H + +V GVE ++ S L++++ W S++ Y
Sbjct: 318 GKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYAN 377
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY-----DYMISIKFE 97
GY E + LF M + + DH V ACS +G+ ++ Y I + E
Sbjct: 378 HGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFRKMQEKYRIEPRLE 437
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEM 126
AC ++DL + G++ L + M
Sbjct: 438 HYAC----MVDLLGRAGKLSEAYDLIKAM 462
>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 804
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 116/401 (28%), Positives = 180/401 (44%), Gaps = 83/401 (20%)
Query: 1 MELGIQVHAHLIVCGVE-----------LCAFLGS-----QLLEVFCN-----WTSMMGM 39
+ +G QVH H++ CGV+ L A GS QL + F N W M+
Sbjct: 44 LAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISG 103
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G +E NLF LM + + PD F + ACS G++++ ++
Sbjct: 104 YAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVME------ 157
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+GL D V N+LI YAKC ++ + F + +
Sbjct: 158 --------------------AGLA----NDTTVGNALISMYAKCGSVRDARRVFDAMASR 193
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D VSW + YA G+ EE +L M+Q ++P+ I+ VL+AC + ++ GK
Sbjct: 194 DEVSWTTLTGAYAESGYGEE--SLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQ 251
Query: 220 IHGYVLRHHIH----LSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH +++ H +STA CG + VF LS RDV+ WN++I FV SGQ
Sbjct: 252 IHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQ 311
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW------------- 315
+ +A ++ V P+ T +VL AC A P GL G +
Sbjct: 312 LEEAHGTFHRMLEEGVAPDRATYTTVLSAC----ARPGGLARGKEIHARAAKDGLVSDVR 367
Query: 316 --NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
NALI+MY + G+++ +R++F MP +++VSW ++ Y
Sbjct: 368 FGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYA 408
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 151/345 (43%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT++ G Y GY EE + ++ M+ + VRP V AC L GK ++ ++
Sbjct: 197 SWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHI 256
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ E D V+ +L Y KC K +
Sbjct: 257 VE------------------------------SEYHSDVRVSTALTKMYMKCGAFKDARE 286
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +D+++WN M+ G+ G EE M ++ + P+ + + VL+ACA+
Sbjct: 287 VFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRM--LEEGVAPDRATYTTVLSACARP 344
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
G+ GK IH + I++ + G + + VF+++ RDVV W +++
Sbjct: 345 GGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLL 404
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLG 309
+ QVV++ + ++ VK N +T + VL AC AL GL
Sbjct: 405 GRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLL 464
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V NAL+ MY +CG+++ + ++F M +++V+WN +I G
Sbjct: 465 ADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLG 509
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 155/329 (47%), Gaps = 55/329 (16%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G+Y L YL KG + D + K+ ++C + KD VGK V+++++
Sbjct: 8 GWYAPADVLQYLH-RKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHIL----------- 55
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
+CG + + + N+L+ YA C + + F K K +VS
Sbjct: 56 --------RCG-----------VKPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVS 96
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
WN M++GYA G +E NL M+ Q ++P+ + +L+AC+ + G+ IH
Sbjct: 97 WNVMISGYAHRGLAQEAFNLFTLMQ--QERLEPDKFTFVSILSACSSPAVLNWGREIHVR 154
Query: 224 VLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
V+ I + CG V + VF+ +++RD V W ++ A+ SG ++
Sbjct: 155 VMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEES 214
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------VWNALIDM 321
L ++ V+P+ +T ++VL AC LAAL +G + V AL M
Sbjct: 215 LKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKM 274
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
Y +CGA + +R++F + ++++++WN MI
Sbjct: 275 YMKCGAFKDAREVFECLSYRDVIAWNTMI 303
>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 760
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 114/432 (26%), Positives = 204/432 (47%), Gaps = 87/432 (20%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCNW---------------------TSMMGMYNVLG 44
Q HA ++ G + ++ ++L+ + N+ +S++
Sbjct: 36 QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
+ + + +F M G+ PD V P ++K C+EL ++VGK ++ + +A V+
Sbjct: 96 LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQG 155
Query: 105 PLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLK-----VSHCKFSKIKQ 158
+ ++++CGRM +F+ M D+D + ++L+ YA+ L+ +S + S I +
Sbjct: 156 SMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGI-E 214
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
++VSWN +L+G+ G+ +E + ++ + P+ +++S VL + + + +G+
Sbjct: 215 ANIVSWNGILSGFNRSGYHKEAVVMFQKIHHL--GFCPDQVTVSSVLPSVGDSEMLNMGR 272
Query: 219 AIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRD--------------- 252
IHGYV++ I + G V S+FNQ +
Sbjct: 273 LIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNG 332
Query: 253 --------------------VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
VV W SII+ ++G+ ++AL+L R++ VA VKPN VTI
Sbjct: 333 LVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIP 392
Query: 293 SVLPACLKLAALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMPHK 341
S+LPAC +AAL G T F V +ALIDMY +CG I S+ +F +MP K
Sbjct: 393 SMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTK 452
Query: 342 NLVSWNVMISVY 353
NLV WN +++ +
Sbjct: 453 NLVCWNSLMNGF 464
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 162/336 (48%), Gaps = 30/336 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W ++ +N GY++E V +F + G PD V + + + +G+ ++ Y+
Sbjct: 219 SWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYV 278
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSH 150
I + CV ++D++ K G + LF + + + V N+ I ++ + +
Sbjct: 279 IKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKAL 338
Query: 151 CKFSKIKQK----DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
F K++ ++VSW +++AG A G E L EM++ ++PN +++ +L
Sbjct: 339 EMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQV--AGVKPNHVTIPSMLP 396
Query: 207 ACAQVKGVKLGKAIHGYVLRHH----IHLSTA-------CGFVICSCSVFNQLSTRDVVV 255
AC + + G++ HG+ +R H +H+ +A CG + S VFN + T+++V
Sbjct: 397 ACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVC 456
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC------------LKLAA 303
WNS+++ F G+ + + + ++ +KP+ ++ S+L AC K+ +
Sbjct: 457 WNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMS 516
Query: 304 LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
G+ ++ ++++ GR G +Q++ + MP
Sbjct: 517 EEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMP 552
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 93/202 (46%), Gaps = 33/202 (16%)
Query: 11 LIVCGVELCAFLGSQLLEV-FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCP 69
L+ +E+ Q +E+ +WTS++ G E + LF M GV+P+H P
Sbjct: 333 LVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIP 392
Query: 70 KVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQD 129
+ AC + G+ + + + + N V L+D++ KCGR+ ++ +F M
Sbjct: 393 SMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMM--- 449
Query: 130 FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
K+LV WN+++ G+++ G +EV ++ + +
Sbjct: 450 ---------------------------PTKNLVCWNSLMNGFSMHGKAKEVMSIFE--SL 480
Query: 190 IQTDMQPNTISLSGVLAACAQV 211
++T ++P+ IS + +L+AC QV
Sbjct: 481 MRTRLKPDFISFTSLLSACGQV 502
>gi|147773389|emb|CAN64573.1| hypothetical protein VITISV_010383 [Vitis vinifera]
Length = 672
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/343 (29%), Positives = 171/343 (49%), Gaps = 54/343 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +++ Y++ G + ++ M+ GVRPD P V KAC++ + R G++V+ ++
Sbjct: 10 WNTLIRGYSIAGVGGGL-EVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGXVV 68
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ FE D V N+L+ FY C L+ +
Sbjct: 69 KLGFE------------------------------SDVFVGNTLLSFYGNCGGLRDAGRV 98
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ +KDLVSWN M+ +++ G EV +L EM + ++ ++PN +S+ VL CA V+
Sbjct: 99 FDEMPEKDLVSWNTMIGVFSVNGCWXEVLDLFGEMRL-RSGLRPNVVSVVSVLPVCAGVE 157
Query: 213 GVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIIS 261
IHGYV++ + CG V VF ++ +++V WN+II+
Sbjct: 158 DEVTASEIHGYVVKVGLEFQVIVGNALLDVYGKCGNVAALKQVFGEMVEKNLVSWNAIIT 217
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL-----------AALPQGLGT 310
+F G DALD+ R +I +KPN++TI S LP ++L +++ GL +
Sbjct: 218 SFGYKGHYRDALDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLES 277
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
F+ N+LIDMY + G ++ +F + KN+VSWN MI+ +
Sbjct: 278 DIFIANSLIDMYAKSGHSTEASNVFYKLDAKNVVSWNAMIANF 320
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 100/392 (25%), Positives = 176/392 (44%), Gaps = 76/392 (19%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNVLG 44
++H +++ G+E +G+ LL+V+ +W +++ + G
Sbjct: 164 EIHGYVVKVGLEFQVIVGNALLDVYGKCGNVAALKQVFGEMVEKNLVSWNAIITSFGYKG 223
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
+Y + +++F LMID+G++P+ EL+ ++ G++V+ I + E
Sbjct: 224 HYRDALDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLE------- 276
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
D + NSLID YAK + + F K+ K++VSW
Sbjct: 277 -----------------------SDIFIANSLIDMYAKSGHSTEASNVFYKLDAKNVVSW 313
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG-- 222
NAM+A +A F L+ +M+ PN+++ + VL ACA++ V+ GK IH
Sbjct: 314 NAMIANFAQNRFELVAVGLVRQMQ--DYGELPNSVTFTNVLPACARMGLVRPGKEIHARS 371
Query: 223 ---------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
+V + G + + +VF+ S RD V +N +I ++ ++L
Sbjct: 372 IHMGCAFDLFVSNALTDMYAKSGHLKLARNVFDT-SLRDEVSYNILIVGXSQTSDCSESL 430
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNALIDMY 322
L ++ + +K + V+ + L AC L A+ QG FV N+L+D Y
Sbjct: 431 SLFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEIHGFLLRKLFHIHLFVANSLLDFY 490
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+CG I +R IF M +K++ SWN MI YG
Sbjct: 491 TKCGRIGLARNIFDRMTNKDVASWNTMILGYG 522
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 98/392 (25%), Positives = 179/392 (45%), Gaps = 79/392 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G +VH ++ G E F+G+ LL + N W +M+G+++V
Sbjct: 60 GREVHGXVVKLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSV 119
Query: 43 LGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G + E+++LF M + G+RP+ V C+ ++D +++ Y++ + E
Sbjct: 120 NGCWXEVLDLFGEMRLRSGLRPNVVSVVSVLPVCAGVEDEVTASEIHGYVVKVGLEFQVI 179
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
V LLD++ KCG + +F EM +K+L
Sbjct: 180 VGNALLDVYGKCGNVAALKQVFGEM------------------------------VEKNL 209
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEME-MIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
VSWNA++ + G++ + LD MI ++PN+I++S L +++ K G+ +
Sbjct: 210 VSWNAIITSF---GYKGHYRDALDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREV 266
Query: 221 HGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
HG +R I + G + +VF +L ++VV WN++I+ F ++
Sbjct: 267 HGSSIRMGLESDIFIANSLIDMYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFE 326
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNAL 318
+ A+ L+R + PN+VT +VLPAC ++ ++ G FV NAL
Sbjct: 327 LVAVGLVRQMQDYGELPNSVTFTNVLPACARMGLVRPGKEIHARSIHMGCAFDLFVSNAL 386
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
DMY + G ++ +R +F ++ VS+N++I
Sbjct: 387 TDMYAKSGHLKLARNVFD-TSLRDEVSYNILI 417
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 172/392 (43%), Gaps = 81/392 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G +VH I G+E F+ + L++++ +W +M+ +
Sbjct: 263 GREVHGSSIRMGLESDIFIANSLIDMYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQ 322
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+ V L M D G P+ V AC+ + R GK+++ I + C
Sbjct: 323 NRFELVAVGLVRQMQDYGELPNSVTFTNVLPACARMGLVRPGKEIHARSIHM-----GCA 377
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
DLF V+N+L D YAK +LK++ F +D V
Sbjct: 378 ----FDLF---------------------VSNALTDMYAKSGHLKLARNVFD-TSLRDEV 411
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
S+N ++ G + E +L EM+++ ++ + +S G L+ACA + +K GK IHG
Sbjct: 412 SYNILIVGXSQTSDCSESLSLFSEMQLM--GLKQDNVSFMGALSACANLTAIKQGKEIHG 469
Query: 223 YVLRH--HIHL---------STACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
++LR HIHL T CG + + ++F++++ +DV WN++I + G++
Sbjct: 470 FLLRKLFHIHLFVANSLLDFYTKCGRIGLARNIFDRMTNKDVASWNTMILGYGMLGELDT 529
Query: 272 ALDLLRDVIVAN--VKPNTVTIVSVLPACL--------KLAALPQGLG--TGSFVWNALI 319
A+DLL + + + ++V+ ++VL AC + A L +GL + +W AL+
Sbjct: 530 AIDLLTENMRKDDVESDDSVSFIAVLSACSHGRAGLMEEAAELIKGLPIVPDANIWGALL 589
Query: 320 D---MYGRCG-AIQKSRKIFVLMPHKNLVSWN 347
+YG A + +F L P W+
Sbjct: 590 GACRIYGNLELAAWAAEHLFELKPEHKTGRWD 621
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 12/110 (10%)
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------- 307
+WN++I + +G V L++ ++ V+P+ T VL AC + +G
Sbjct: 9 LWNTLIRGYSIAG-VGGGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGXV 67
Query: 308 --LGTGS--FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
LG S FV N L+ YG CG ++ + ++F MP K+LVSWN MI V+
Sbjct: 68 VKLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVF 117
>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 679
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 103/340 (30%), Positives = 161/340 (47%), Gaps = 54/340 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ + + + F M G PDH V P V K+C+ + D R G+ V+ +++
Sbjct: 73 WKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIV 132
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ MD D N+L++ Y+K +
Sbjct: 133 RLG------------------------------MDCDLYTGNALMNMYSKLLGIDSVRKV 162
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + +KD+VS+N ++AGYA G E+ ++ EM +D++P+ +LS VL ++
Sbjct: 163 FELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGT--SDLKPDAFTLSSVLPIFSEYV 220
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVIC-----------SCSVFNQLSTRDVVVWNSIIS 261
V GK IHGYV+R I G + S VF+ L RD + WNS+++
Sbjct: 221 DVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVA 280
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLGT 310
+V++G+ +AL L R ++ A V+P V SV+PAC LA L G G
Sbjct: 281 GYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGR 340
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
F+ +AL+DMY +CG IQ +RKIF M + VSW +I
Sbjct: 341 NIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAII 380
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 158/355 (44%), Gaps = 68/355 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ G VH ++ G++ + G+ L+ ++ ++ +++
Sbjct: 121 LRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAG 180
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G YE+ + + M ++PD F V SE D GK+++ Y+I
Sbjct: 181 YAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIR------ 234
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ +D D + +SL+D YAK ++ S FS + ++
Sbjct: 235 ------------------------KGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRR 270
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D +SWN+++AGY G E L +M+ ++P ++ S V+ ACA + + LGK
Sbjct: 271 DSISWNSLVAGYVQNGRYNEALRLF--RQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQ 328
Query: 220 IHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+HGYVLR +I +++A CG + + +F++++ D V W +II G
Sbjct: 329 LHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGH 388
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYG 323
+A+ L ++ VKPN V V+VL AC + + + G +N++ +YG
Sbjct: 389 GHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWG----YFNSMTKVYG 439
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 115/240 (47%), Gaps = 24/240 (10%)
Query: 136 LIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ 195
+I Y + L + F ++ +++W +++ + L +EM +
Sbjct: 45 VISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCFTDQSLFSRA--LASFVEMRASGRC 102
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSC-----------SV 244
P+ VL +C + ++ G+++HG+++R + G + + V
Sbjct: 103 PDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKV 162
Query: 245 FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-- 302
F + +DVV +N++I+ + +SG DAL ++R++ +++KP+ T+ SVLP +
Sbjct: 163 FELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDV 222
Query: 303 ---------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ +G+ + ++ ++L+DMY + I+ S ++F + ++ +SWN +++ Y
Sbjct: 223 LKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGY 282
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 68/167 (40%), Gaps = 21/167 (12%)
Query: 209 AQVKGVKLGKAIHGYVLRHHIHLSTACGFVIC----------SCSVFNQLSTRDVVVWNS 258
++K K +H +R T+ VI + VF L + V+ W S
Sbjct: 16 TRIKSKSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLVFKTLESPPVLAWKS 75
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV---- 314
+I F AL ++ + P+ SVL +C + L G F+
Sbjct: 76 VIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLG 135
Query: 315 -------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
NAL++MY + I RK+F LMP K++VS+N +I+ Y
Sbjct: 136 MDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYA 182
>gi|15240444|ref|NP_198063.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635756|sp|O04659.2|PP398_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g27110
gi|332006268|gb|AED93651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 691
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 105/345 (30%), Positives = 169/345 (48%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ + G E+ + LF M G P+ ACS L GK+++
Sbjct: 175 SWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIH--- 231
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
CVK+ E+D+ VN++L+D Y KC L+V+
Sbjct: 232 -------RKCVKKGF------------------ELDE--YVNSALVDMYGKCDCLEVARE 264
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K+ +K LV+WN+M+ GY G + +L+ M I +P+ +L+ +L AC++
Sbjct: 265 VFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRM--IIEGTRPSQTTLTSILMACSRS 322
Query: 212 KGVKLGKAIHGYVLRH-----------HIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ + GK IHGYV+R I L CG + +VF++ WN +I
Sbjct: 323 RNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMI 382
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
S+++ G A+++ ++ VKP+ VT SVLPAC +LAAL +G L
Sbjct: 383 SSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLE 442
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
T + +AL+DMY +CG +++ +IF +P K++VSW VMIS YG
Sbjct: 443 TDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYG 487
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/386 (24%), Positives = 167/386 (43%), Gaps = 76/386 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF--CN-------------------WTSMMGM 39
+E G ++H + G EL ++ S L++++ C+ W SM+
Sbjct: 224 LERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKG 283
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G + V + MI +G RP + ACS ++ GK ++ Y+I
Sbjct: 284 YVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVI------- 336
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
R +++ D VN SLID Y KC ++ FSK ++
Sbjct: 337 ----RSVVN-------------------ADIYVNCSLIDLYFKCGEANLAETVFSKTQKD 373
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
SWN M++ Y G + + D+M + ++P+ ++ + VL AC+Q+ ++ GK
Sbjct: 374 VAESWNVMISSYISVGNWFKAVEVYDQM--VSVGVKPDVVTFTSVLPACSQLAALEKGKQ 431
Query: 220 IH-----------GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH +L + + + CG + +FN + +DVV W +ISA+ GQ
Sbjct: 432 IHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQ 491
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WN 316
+AL ++ +KP+ VT+++VL AC + +GL S + ++
Sbjct: 492 PREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYS 551
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKN 342
+ID+ GR G + ++ +I P +
Sbjct: 552 CMIDILGRAGRLLEAYEIIQQTPETS 577
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 124/264 (46%), Gaps = 50/264 (18%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK-----DLVSWNAMLAGYALGGFREEV 180
+ +D ++ SLI+ Y C+ HC + + D+ WN++++GY+
Sbjct: 35 LRRDVVLCKSLINVYFTCK----DHCSARHVFENFDIRSDVYIWNSLMSGYSKNSM---- 86
Query: 181 TNLLDEMEMIQTDMQ-----PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTAC 235
D +E+ + + P++ + V+ A + LG+ IH V++ C
Sbjct: 87 --FHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFLGRMIHTLVVKS----GYVC 140
Query: 236 GFVICSC---------------SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280
V+ S VF+++ RDV WN++IS F +SG+ AL+L +
Sbjct: 141 DVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELFGRME 200
Query: 281 VANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQ 329
+ +PN+V++ + AC +L L +G +V +AL+DMYG+C ++
Sbjct: 201 SSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLE 260
Query: 330 KSRKIFVLMPHKNLVSWNVMISVY 353
+R++F MP K+LV+WN MI Y
Sbjct: 261 VAREVFQKMPRKSLVAWNSMIKGY 284
>gi|297808809|ref|XP_002872288.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318125|gb|EFH48547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 690
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 107/352 (30%), Positives = 179/352 (50%), Gaps = 41/352 (11%)
Query: 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS 93
+S++GMY +E+ V +F M ++ V + V Y+ D +++ M
Sbjct: 145 SSLVGMYAKFNLFEDSVQVFDEMPERDVASWNTVISSFYQR----GDAEKALELFGRMER 200
Query: 94 IKFEGN---------ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCR 144
FE N AC + L ++ G+ L +E + D VN++L+D Y +C
Sbjct: 201 SDFEPNSVSITVAISACSRL----LCLERGKEIHRKYLKKEFELDEYVNSALVDMYGRCD 256
Query: 145 YLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGV 204
+L+++ F ++++K LV+WN+M+ GY G + LL+ MI +P+ +L+ +
Sbjct: 257 FLEMAREVFQQMRRKSLVAWNSMIRGYVARGDSKSCVELLN--RMIIEGTRPSQTTLTSI 314
Query: 205 LAACAQVKGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDV 253
L AC++ + + GK +HGYV+R I L CG V + +VF + V
Sbjct: 315 LMACSRSRNLLHGKFVHGYVIRSVVDADIYINCSLIDLYFKCGEVKLAETVFLKTQKDVV 374
Query: 254 VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------ 307
WN +IS +V G A+D+ ++ V+P+ VT SVL C +LAAL +G
Sbjct: 375 ESWNVMISGYVSVGNWFKAVDVYDQMVSVGVQPDIVTFTSVLSTCSQLAALEKGKQIHLS 434
Query: 308 -----LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L T + +AL+DMY +CG ++++ +IF +P K++VSW VMIS YG
Sbjct: 435 ISESRLETDELLLSALLDMYSKCGNVKEASRIFNSIPKKDVVSWTVMISAYG 486
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 157/344 (45%), Gaps = 55/344 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGV-RPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W S++ Y+ + + + +F +++ + PD F P V KA L +G+ ++ +
Sbjct: 73 WNSLVSGYSKNSMFHDTLKVFKRLLNCPICVPDSFTYPNVIKAYGALGREFLGRMIHTVV 132
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ G+ C D +V +SL+ YAK + S
Sbjct: 133 VK---SGHVC---------------------------DVVVASSLVGMYAKFNLFEDSVQ 162
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ ++D+ SWN +++ + G E+ L ME ++D +PN++S++ ++AC+++
Sbjct: 163 VFDEMPERDVASWNTVISSFYQRGDAEKALELFGRME--RSDFEPNSVSITVAISACSRL 220
Query: 212 KGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSII 260
++ GK IH L+ L C F+ + VF Q+ + +V WNS+I
Sbjct: 221 LCLERGKEIHRKYLKKEFELDEYVNSALVDMYGRCDFLEMAREVFQQMRRKSLVAWNSMI 280
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN---- 316
+V G ++LL +I+ +P+ T+ S+L AC + L G +V
Sbjct: 281 RGYVARGDSKSCVELLNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFVHGYVIRSVVD 340
Query: 317 -------ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+LID+Y +CG ++ + +F+ + SWNVMIS Y
Sbjct: 341 ADIYINCSLIDLYFKCGEVKLAETVFLKTQKDVVESWNVMISGY 384
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/385 (24%), Positives = 168/385 (43%), Gaps = 78/385 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF--CN-------------------WTSMMGM 39
+E G ++H + EL ++ S L++++ C+ W SM+
Sbjct: 223 LERGKEIHRKYLKKEFELDEYVNSALVDMYGRCDFLEMAREVFQQMRRKSLVAWNSMIRG 282
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G + V L MI +G RP + ACS ++ GK V+ Y+I + +
Sbjct: 283 YVARGDSKSCVELLNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFVHGYVIRSVVDAD 342
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ L+DL+ KCG +++ +F LK QK
Sbjct: 343 IYINCSLIDLYFKCGEVKLAETVF----------------------LKT---------QK 371
Query: 160 DLV-SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
D+V SWN M++GY G + ++ D +M+ +QP+ ++ + VL+ C+Q+ ++ GK
Sbjct: 372 DVVESWNVMISGYVSVGNWFKAVDVYD--QMVSVGVQPDIVTFTSVLSTCSQLAALEKGK 429
Query: 219 AIH-----------GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
IH +L + + + CG V + +FN + +DVV W +ISA+ G
Sbjct: 430 QIHLSISESRLETDELLLSALLDMYSKCGNVKEASRIFNSIPKKDVVSWTVMISAYGSHG 489
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------W 315
Q +AL ++ VKP+ VT ++VL AC + +G+ S + +
Sbjct: 490 QPREALYHFDEMQKFGVKPDGVTFLAVLSACGHAGLIDEGVKYFSQMRSKYGIEASIEQY 549
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPH 340
+ LID+ GR G + ++ I P
Sbjct: 550 SCLIDILGRAGRLLEAYGILQQKPE 574
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 123/260 (47%), Gaps = 42/260 (16%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCK----FSKIK-QKDLVSWNAMLAGYALGGFREEV 180
+ D ++ SLI+ Y C+ HC F I + D+ WN++++GY+ +
Sbjct: 34 LRSDVVLCKSLINVYFACK----DHCSARLVFENIDIRSDVYIWNSLVSGYSKNSMFHDT 89
Query: 181 TNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH-HIHLSTACGFVI 239
+ + + P++ + V+ A + LG+ IH V++ H+ C V+
Sbjct: 90 LKVFKRLLNCPICV-PDSFTYPNVIKAYGALGREFLGRMIHTVVVKSGHV-----CDVVV 143
Query: 240 CSC---------------SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV 284
S VF+++ RDV WN++IS+F + G AL+L + ++
Sbjct: 144 ASSLVGMYAKFNLFEDSVQVFDEMPERDVASWNTVISSFYQRGDAEKALELFGRMERSDF 203
Query: 285 KPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRK 333
+PN+V+I + AC +L L +G +V +AL+DMYGRC ++ +R+
Sbjct: 204 EPNSVSITVAISACSRLLCLERGKEIHRKYLKKEFELDEYVNSALVDMYGRCDFLEMARE 263
Query: 334 IFVLMPHKNLVSWNVMISVY 353
+F M K+LV+WN MI Y
Sbjct: 264 VFQQMRRKSLVAWNSMIRGY 283
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 78/177 (44%), Gaps = 24/177 (13%)
Query: 201 LSGVLAACAQVKGVKLGKAIHGYVL-----------RHHIHLSTACGFVICSCSVFNQLS 249
L +L C K ++ K +H +L + I++ AC + VF +
Sbjct: 6 LLSLLRECTNTKSLRQAKLVHQRILTVGLRSDVVLCKSLINVYFACKDHCSARLVFENID 65
Query: 250 TR-DVVVWNSIISAFVRSGQVVDALDLLRDVIVANV-KPNTVTIVSVLPA---------- 297
R DV +WNS++S + ++ D L + + ++ + P++ T +V+ A
Sbjct: 66 IRSDVYIWNSLVSGYSKNSMFHDTLKVFKRLLNCPICVPDSFTYPNVIKAYGALGREFLG 125
Query: 298 -CLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ + G V ++L+ MY + + S ++F MP +++ SWN +IS +
Sbjct: 126 RMIHTVVVKSGHVCDVVVASSLVGMYAKFNLFEDSVQVFDEMPERDVASWNTVISSF 182
>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
Length = 1321
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 108/383 (28%), Positives = 181/383 (47%), Gaps = 84/383 (21%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G +HAHL++ G+ + ++L+ + W + G
Sbjct: 822 GRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACAR 881
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G+YEE ++ F M +G+RP+ FV P + KAC L D R G++++ ++ FE +A +
Sbjct: 882 RGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYI 941
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L+ ++ KCG +E +F D++V+ KDLV
Sbjct: 942 ISALIYMYSKCGHVEKACRVF-----DWIVD-------------------------KDLV 971
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
NAM++GYA GF E BL+ +M+ Q ++PN +S + ++A +QV K++
Sbjct: 972 VMNAMVSGYAQHGFVHEALBLVQKMQ--QAGVKPNVVSWNTLIAGFSQVGD----KSMVS 1025
Query: 223 YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
V R L TA G DVV W S+IS FV++ + D ++++
Sbjct: 1026 EVFR----LMTANGV------------EPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQ 1069
Query: 283 NVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKS 331
P++VTI S+LPAC +A L G + +V +AL+DMY +CG I ++
Sbjct: 1070 GFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEA 1129
Query: 332 RKIFVLMPHKNLVSWNVMISVYG 354
+ +F +MP +N V+WN +I Y
Sbjct: 1130 KILFYMMPERNTVTWNSLIFGYA 1152
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/340 (22%), Positives = 145/340 (42%), Gaps = 65/340 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++ G Q+HAH++ +G+ LL ++ +WT+ +
Sbjct: 230 IQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASING 289
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ G +++ + F +M + G+ P+ F V +C +KD+ G+ + +I
Sbjct: 290 FYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASG 349
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V ++D++ G M+ F++M +
Sbjct: 350 VFVGTAIIDMYSGLGEMDEAEKQFKQMG-----------------------------RAA 380
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEM-EMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
VSWNA++AGY L E++ ++ M++ D+ N + S + AC+ +
Sbjct: 381 SNVSWNALIAGYVLN---EKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTV 437
Query: 219 AIHGYVLRHHI----HLS-------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
IH +++ ++ H++ T CG + + VF Q+S DVV WNSII A+ ++G
Sbjct: 438 QIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNG 497
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
A+ LLR +I KP + T ++VL AC + +G
Sbjct: 498 DPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQEG 537
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/342 (21%), Positives = 149/342 (43%), Gaps = 57/342 (16%)
Query: 36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIK 95
++ Y G++ + +F + + G RP+H+ + C + + GK ++ +++ ++
Sbjct: 185 LISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQ 244
Query: 96 FEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSK 155
+ V LL L+ KCG ME +FE +
Sbjct: 245 YLSETAVGNALLTLYSKCGMMEEAEIVFESL----------------------------- 275
Query: 156 IKQKDLVSWNAMLAG-YALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGV 214
+Q++++SW A + G Y G F++ + M ++ ++PN + S VLA+C VK
Sbjct: 276 -RQRNIISWTASINGFYQHGDFKKALKQF---SMMRESGIEPNEFTFSIVLASCGCVKDF 331
Query: 215 KLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLS-TRDVVVWNSIISA 262
G+ H V++ I + + G + + F Q+ V WN++I+
Sbjct: 332 IDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAG 391
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS---------- 312
+V + ++ A++ ++ +V N T ++ AC +L + S
Sbjct: 392 YVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKSNVESN 451
Query: 313 -FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V ++LI+ Y +CG+++ + ++F + ++VSWN +I Y
Sbjct: 452 LHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAY 493
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 91/189 (48%), Gaps = 32/189 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTS++ + + E + F M+D+G P + AC+ + + R GK+++ Y
Sbjct: 1042 SWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYA 1101
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ I E +D V ++L+D YAKC Y+ +
Sbjct: 1102 MVIGVE------------------------------KDVYVRSALVDMYAKCGYISEAKI 1131
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +++ V+WN+++ GYA G+ E L ++ME ++D + + ++ + VL AC+
Sbjct: 1132 LFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQME--ESDTKLDHLTFTAVLNACSHA 1189
Query: 212 KGVKLGKAI 220
V+LG+++
Sbjct: 1190 GMVELGESL 1198
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 85/178 (47%), Gaps = 22/178 (12%)
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSV 244
P+ + L+ C + V+LG+ H +V++ I + CG V + V
Sbjct: 111 PHRQYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRV 170
Query: 245 FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL 304
++++++ D N +ISA+ R+G V A + + +PN T ++L C ++A+
Sbjct: 171 YDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAI 230
Query: 305 PQGLG-----------TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+G + + V NAL+ +Y +CG ++++ +F + +N++SW I+
Sbjct: 231 QEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASIN 288
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 30/149 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G ++H + +V GVE ++ S L++++ W S++ Y
Sbjct: 1094 GKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYAN 1153
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY-----DYMISIKFE 97
GY E + LF M + + DH V ACS +G+ ++ Y I + E
Sbjct: 1154 HGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRIEPRLE 1213
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEM 126
AC ++DL + G++ L + M
Sbjct: 1214 HYAC----MVDLLGRAGKLSEAYDLIKAM 1238
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
GLG+ FV +LIDMY +CG + + +++ M + + N +IS Y
Sbjct: 143 GLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYA 190
>gi|224118338|ref|XP_002317794.1| predicted protein [Populus trichocarpa]
gi|222858467|gb|EEE96014.1| predicted protein [Populus trichocarpa]
Length = 852
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 117/437 (26%), Positives = 209/437 (47%), Gaps = 87/437 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
+LG QVHAH I G + F+ ++LL+++ +W +++ +Y
Sbjct: 76 KLGKQVHAHTIKTGFDADGFIDTKLLQMYARCGLLKDADFLFETMPMRNLHSWKAILSVY 135
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G +EE LF ++ GV D FV P V+KACS L +G+ ++ +I +F N
Sbjct: 136 LDHGLFEEAFLLFQVLQFDGVELDFFVFPLVFKACSGLGSVELGRQLHGLVIKFRFCLNI 195
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V L+D++ KCG ++ + +M ++D + NS+I A + + K+K
Sbjct: 196 YVSNALIDMYGKCGSLDDAKKVLVKMPERDSVTWNSVITACAANGMVYEALEFLEKMKSL 255
Query: 160 D-----LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGV 214
D +VSW+A++ G+A G+ EE +L M++ + PN +L+GVL ACA+++ +
Sbjct: 256 DYSMPNVVSWSAVIGGFAQNGYDEEAIEMLFRMQV--EGLVPNAQTLAGVLPACARLQRL 313
Query: 215 KLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDV---------- 253
LGK +HGY+ RH + + CG + + +F + S ++V
Sbjct: 314 DLGKQLHGYITRHDFISNPVVVNALVDVYRRCGDMGGAAKIFLKFSVKNVLSCNTMIVGY 373
Query: 254 -------------------------VVWNSIISAFVRSGQVVDALDLLRDVIVAN-VKPN 287
+ WNSIIS +VR+ +A + +++++ ++P+
Sbjct: 374 CESGDVSKAKELFDCMDVLGIERGLISWNSIISGYVRNFMFDEAFSMFQNMLMEEGIEPD 433
Query: 288 TVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFV 336
+ T+ SVL AC +L Q GL + +FV AL++MY +C + ++ F
Sbjct: 434 SFTLGSVLTACADTISLRQGKEIHAQAIVKGLQSDTFVGGALVEMYSKCQDLTAAQVAFD 493
Query: 337 LMPHKNLVSWNVMISVY 353
+ K++ +WN +IS Y
Sbjct: 494 EVMEKDVPTWNALISGY 510
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/392 (23%), Positives = 178/392 (45%), Gaps = 81/392 (20%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W++++G + GY EE + + + M +G+ P+ V AC+ L+ +GK ++ Y+
Sbjct: 264 SWSAVIGGFAQNGYDEEAIEMLFRMQVEGLVPNAQTLAGVLPACARLQRLDLGKQLHGYI 323
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F N V L+D++ +CG M + +F + F V N L C + V +C
Sbjct: 324 TRHDFISNPVVVNALVDVYRRCGDMGGAAKIFLK----FSVKNVL-----SCNTMIVGYC 374
Query: 152 K---FSKIKQ-----------KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN 197
+ SK K+ + L+SWN++++GY +E ++ M +++ ++P+
Sbjct: 375 ESGDVSKAKELFDCMDVLGIERGLISWNSIISGYVRNFMFDEAFSMFQNM-LMEEGIEPD 433
Query: 198 TISLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFN 246
+ +L VL ACA ++ GK IH +V + + + C + + F+
Sbjct: 434 SFTLGSVLTACADTISLRQGKEIHAQAIVKGLQSDTFVGGALVEMYSKCQDLTAAQVAFD 493
Query: 247 QLSTRDVVVWNSIISAFVRSGQVVD----------------------------------- 271
++ +DV WN++IS + RS Q+
Sbjct: 494 EVMEKDVPTWNALISGYTRSNQIERIQYLLEKMKGDGYHPNIYTWNSILAGLVENRQLDL 553
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALID 320
+ L ++ ++ ++P+ T+ +LPAC +LA L + G T + AL+D
Sbjct: 554 TMQLFSEMQISKLRPDIYTVGIILPACSRLATLERGKQAHAHSIKCGYDTDVHIGAALVD 613
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
MY +CG+++ ++ + + + NLVS N M++
Sbjct: 614 MYAKCGSLKYAQLAYDRISNPNLVSHNAMLTA 645
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/336 (20%), Positives = 161/336 (47%), Gaps = 30/336 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFY-LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W S++ Y ++E ++F +++++G+ PD F V AC++ R GK+++
Sbjct: 400 SWNSIISGYVRNFMFDEAFSMFQNMLMEEGIEPDSFTLGSVLTACADTISLRQGKEIHAQ 459
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEE-MDQDFLVNNSLIDFYAKCRYLKVS 149
I + + V L++++ KC + F+E M++D N+LI Y + ++
Sbjct: 460 AIVKGLQSDTFVGGALVEMYSKCQDLTAAQVAFDEVMEKDVPTWNALISGYTRSNQIERI 519
Query: 150 HCKFSKIK----QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
K+K ++ +WN++LAG + L EM++ + ++P+ ++ +L
Sbjct: 520 QYLLEKMKGDGYHPNIYTWNSILAGLVENRQLDLTMQLFSEMQI--SKLRPDIYTVGIIL 577
Query: 206 AACAQVKGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVV 254
AC+++ ++ GK H + ++ +H+ A CG + + ++++S ++V
Sbjct: 578 PACSRLATLERGKQAHAHSIKCGYDTDVHIGAALVDMYAKCGSLKYAQLAYDRISNPNLV 637
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV 314
N++++A G + + L + ++ P+ VT +SVL +C+ + ++ G +
Sbjct: 638 SHNAMLTACAMHGHGEEGISLFQTMLALGFIPDHVTFLSVLSSCVHVGSVETGCEFFDLM 697
Query: 315 -----------WNALIDMYGRCGAIQKSRKIFVLMP 339
+ +++D+ R G + ++ ++ MP
Sbjct: 698 GYYNVKPTLKHYTSMVDLLSRSGQLHEAYELIKKMP 733
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 26/183 (14%)
Query: 193 DMQP-NTISLSGVLAACAQVKGVKLGKAIH-----------GYVLRHHIHLSTACGFVIC 240
D +P NT + VL +C K KLGK +H G++ + + CG +
Sbjct: 56 DNKPLNTSKYASVLDSC---KCPKLGKQVHAHTIKTGFDADGFIDTKLLQMYARCGLLKD 112
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ +F + R++ W +I+S ++ G +A L + + V+ + V AC
Sbjct: 113 ADFLFETMPMRNLHSWKAILSVYLDHGLFEEAFLLFQVLQFDGVELDFFVFPLVFKACSG 172
Query: 301 LAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L ++ G +V NALIDMYG+CG++ ++K+ V MP ++ V+WN +
Sbjct: 173 LGSVELGRQLHGLVIKFRFCLNIYVSNALIDMYGKCGSLDDAKKVLVKMPERDSVTWNSV 232
Query: 350 ISV 352
I+
Sbjct: 233 ITA 235
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 70/316 (22%), Positives = 121/316 (38%), Gaps = 72/316 (22%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G ++HA IV G++ F+G L+E++ W +++ Y
Sbjct: 453 GKEIHAQAIVKGLQSDTFVGGALVEMYSKCQDLTAAQVAFDEVMEKDVPTWNALISGYTR 512
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKAC-------------SELKDYRVGKDVYD 89
E I L M G P+ + + SE++ ++ D+Y
Sbjct: 513 SNQIERIQYLLEKMKGDGYHPNIYTWNSILAGLVENRQLDLTMQLFSEMQISKLRPDIYT 572
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
I + AC + L+ + I G D D + +L+D YAKC LK +
Sbjct: 573 VGIILP----ACSRLATLERGKQAHAHSIKCGY----DTDVHIGAALVDMYAKCGSLKYA 624
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
+ +I +LVS NAML A+ G EE +L M+ P+ ++ VL++C
Sbjct: 625 QLAYDRISNPNLVSHNAMLTACAMHGHGEEGISLFQ--TMLALGFIPDHVTFLSVLSSCV 682
Query: 210 QVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVV----WNSIISAFVR 265
V V+ G C F+ + +V + S++ R
Sbjct: 683 HVGSVETG------------------------CEFFDLMGYYNVKPTLKHYTSMVDLLSR 718
Query: 266 SGQVVDALDLLRDVIV 281
SGQ+ +A +L++ + V
Sbjct: 719 SGQLHEAYELIKKMPV 734
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 285 KP-NTVTIVSVLPAC--------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIF 335
KP NT SVL +C + + G F+ L+ MY RCG ++ + +F
Sbjct: 58 KPLNTSKYASVLDSCKCPKLGKQVHAHTIKTGFDADGFIDTKLLQMYARCGLLKDADFLF 117
Query: 336 VLMPHKNLVSWNVMISVY 353
MP +NL SW ++SVY
Sbjct: 118 ETMPMRNLHSWKAILSVY 135
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 60/147 (40%), Gaps = 21/147 (14%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q HAH I CG + +G+ L++++ + +M+
Sbjct: 586 LERGKQAHAHSIKCGYDTDVHIGAALVDMYAKCGSLKYAQLAYDRISNPNLVSHNAMLTA 645
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ G+ EE ++LF M+ G PDH V +C + G + +D M +
Sbjct: 646 CAMHGHGEEGISLFQTMLALGFIPDHVTFLSVLSSCVHVGSVETGCEFFDLMGYYNVKPT 705
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEM 126
++DL + G++ L ++M
Sbjct: 706 LKHYTSMVDLLSRSGQLHEAYELIKKM 732
>gi|357145591|ref|XP_003573696.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Brachypodium distachyon]
Length = 618
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 97/345 (28%), Positives = 168/345 (48%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ Y G ++ + +F +M+ +G P+ F + KACS+ K +R GK ++
Sbjct: 249 SWTTMITAYVQHGRGDKALEMFSVMVSEGYYPNEFTVCSILKACSDEKAFRFGKQLH--- 305
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
A VK+ D D V ++L+ YA+ + +
Sbjct: 306 -------GAIVKKLYKD--------------------DIHVGSALVTMYARLGEVFDAQA 338
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K+ +++ ++W +M++GYA G E+ L M+M + + N +++ G+L+AC +
Sbjct: 339 VFDKMARRNTITWTSMISGYAQSGHGEKAILLFQNMKMRRVSI--NNLTIVGLLSACGSI 396
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVI----CSCS-------VFNQLSTRDVVVWNSII 260
+ ++LGK +H ++++ I + G + C C + + RD + W ++I
Sbjct: 397 QSLRLGKELHAQIIKNSIQENLQIGSTLVWCYCKCGEYTYAARILKDMPDRDAISWTAMI 456
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-------- 312
S + G +AL L D++ VKPNT T S L AC KL AL G
Sbjct: 457 SGYNSVGHNAEALKSLDDMLWDGVKPNTYTYSSALKACAKLEALQDGRRIHGVVNKTPAF 516
Query: 313 ---FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
FV ++LIDMY RCG + +R++F MP NLV+W V+I+ +
Sbjct: 517 LNVFVGSSLIDMYMRCGNVDDARRVFDAMPEHNLVTWKVIITGFA 561
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/346 (25%), Positives = 164/346 (47%), Gaps = 59/346 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH--FVCPKVYKACSELKDYRVGKDVYD 89
+WT+++ Y G Y E+V LF M+ GVR + FVC + K+C E + ++G+ V+
Sbjct: 149 SWTAIINGYQKSGNYNEVVRLFLDMVGSGVRGNSLTFVC--LLKSCGEQCNTKLGRQVH- 205
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
CV +K G + +++++++ FYA+C ++ +
Sbjct: 206 ----------CCV--------VKGGWSNV------------IMDSAVVHFYAQCGHIASA 235
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F K+ +D++SW M+ Y G ++ + M+ PN ++ +L AC+
Sbjct: 236 STMFDKMASRDVISWTTMITAYVQHGRGDKALEMFS--VMVSEGYYPNEFTVCSILKACS 293
Query: 210 QVKGVKLGKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNS 258
K + GK +HG +++ IH+ +A G V + +VF++++ R+ + W S
Sbjct: 294 DEKAFRFGKQLHGAIVKKLYKDDIHVGSALVTMYARLGEVFDAQAVFDKMARRNTITWTS 353
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------- 307
+IS + +SG A+ L +++ + V N +TIV +L AC + +L G
Sbjct: 354 MISGYAQSGHGEKAILLFQNMKMRRVSINNLTIVGLLSACGSIQSLRLGKELHAQIIKNS 413
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ + + L+ Y +CG + +I MP ++ +SW MIS Y
Sbjct: 414 IQENLQIGSTLVWCYCKCGEYTYAARILKDMPDRDAISWTAMISGY 459
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 123/245 (50%), Gaps = 23/245 (9%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
V N+LI+ YA+ + + F ++ K +VSW A++ GY G EV L ++M+
Sbjct: 117 FVANNLINAYARFHEISDARKVFDEMPDKSVVSWTAIINGYQKSGNYNEVVRLF--LDMV 174
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----------IHLSTACGFVIC 240
+ ++ N+++ +L +C + KLG+ +H V++ +H CG +
Sbjct: 175 GSGVRGNSLTFVCLLKSCGEQCNTKLGRQVHCCVVKGGWSNVIMDSAVVHFYAQCGHIAS 234
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ ++F+++++RDV+ W ++I+A+V+ G+ AL++ ++ PN T+ S+L AC
Sbjct: 235 ASTMFDKMASRDVISWTTMITAYVQHGRGDKALEMFSVMVSEGYYPNEFTVCSILKACSD 294
Query: 301 LAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
A G V +AL+ MY R G + ++ +F M +N ++W M
Sbjct: 295 EKAFRFGKQLHGAIVKKLYKDDIHVGSALVTMYARLGEVFDAQAVFDKMARRNTITWTSM 354
Query: 350 ISVYG 354
IS Y
Sbjct: 355 ISGYA 359
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 111/255 (43%), Gaps = 43/255 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WTSM+ Y G+ E+ + LF M + V ++ + AC ++ R+GK+++ +I
Sbjct: 351 WTSMISGYAQSGHGEKAILLFQNMKMRRVSINNLTIVGLLSACGSIQSLRLGKELHAQII 410
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ N + L+ + KCG + + ++M
Sbjct: 411 KNSIQENLQIGSTLVWCYCKCGEYTYAARILKDM-------------------------- 444
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
+D +SW AM++GY G E LD+M + ++PNT + S L ACA+++
Sbjct: 445 ----PDRDAISWTAMISGYNSVGHNAEALKSLDDM--LWDGVKPNTYTYSSALKACAKLE 498
Query: 213 GVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ G+ IHG +V I + CG V + VF+ + ++V W II+
Sbjct: 499 ALQDGRRIHGVVNKTPAFLNVFVGSSLIDMYMRCGNVDDARRVFDAMPEHNLVTWKVIIT 558
Query: 262 AFVRSGQVVDALDLL 276
F ++G +A +
Sbjct: 559 GFAQNGLCEEAFKYM 573
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/233 (20%), Positives = 97/233 (41%), Gaps = 53/233 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ LG ++HA +I ++ +GS L+ +C +WT+M+
Sbjct: 399 LRLGKELHAQIIKNSIQENLQIGSTLVWCYCKCGEYTYAARILKDMPDRDAISWTAMISG 458
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
YN +G+ E + M+ GV+P+ + KAC++L+ + G+ ++ + N
Sbjct: 459 YNSVGHNAEALKSLDDMLWDGVKPNTYTYSSALKACAKLEALQDGRRIHGVVNKTPAFLN 518
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V L+D++++CG ++ +F+ M +
Sbjct: 519 VFVGSSLIDMYMRCGNVDDARRVFDAM------------------------------PEH 548
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
+LV+W ++ G+A G EE + M+ D+ + LS VL +C ++
Sbjct: 549 NLVTWKVIITGFAQNGLCEEAFKYMYLMQQEGHDV--DDFVLSKVLTSCGDLQ 599
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 286 PNTVTIVSVLPAC--------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVL 337
P+ + S+L +C + ++ G G FV N LI+ Y R I +RK+F
Sbjct: 82 PDAEALASLLRSCGSVDDVRRVHAISVRSPDGPGMFVANNLINAYARFHEISDARKVFDE 141
Query: 338 MPHKNLVSWNVMISVY 353
MP K++VSW +I+ Y
Sbjct: 142 MPDKSVVSWTAIINGY 157
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 107/392 (27%), Positives = 194/392 (49%), Gaps = 50/392 (12%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLE---------------VFCN--------WTSMM-GMYN 41
Q+HAH+I G+ F S+L+E +F + W SM+ G+
Sbjct: 47 QIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSM 106
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
L +V F MI GV P+ + P + K+C++L GK ++ +++ + F +
Sbjct: 107 SLSPALALV-FFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVF 165
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
+ L++++ + G M +F++ + +D + +LI YA Y+ + F ++ KD
Sbjct: 166 IHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKD 225
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+VSWNAM+AGYA G +E L ++M + ++ PN ++ VL+ACAQ + LG ++
Sbjct: 226 VVSWNAMIAGYAQMGRSKEALLLFEDMR--KANVPPNESTIVSVLSACAQSNALDLGNSM 283
Query: 221 HGYV-----------LRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
++ + I + + CG + + +F+ + RDV+ WN +I +
Sbjct: 284 RSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSY 343
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNAL----------- 318
+AL L R+++ + V+P +T +S+LP+C L A+ G +++
Sbjct: 344 KEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSL 403
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
ID+Y +CG I +R++F M K+L SWN MI
Sbjct: 404 IDLYAKCGNIVAARQVFDGMKIKSLASWNAMI 435
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 147/311 (47%), Gaps = 62/311 (19%)
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-----NSLIDFYAKCRYLKVSHC--KFSK 155
+ P L L KC + + + + L N + LI+F A R +S+ F+
Sbjct: 29 EHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNS 88
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
I++ +L WN+M+ G ++ L+ + MI + ++PN+ + +L +CA++
Sbjct: 89 IEEPNLFIWNSMIRGLSMS--LSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAH 146
Query: 216 LGKAIHGYVLRH------HIHLS-----------------------------TAC----- 235
GK IH +VL+ IH S TA
Sbjct: 147 EGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYA 206
Query: 236 --GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
G++ + +F+++ +DVV WN++I+ + + G+ +AL L D+ ANV PN TIVS
Sbjct: 207 LWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVS 266
Query: 294 VLPACLKLAALPQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIFVLMPHKN 342
VL AC + AL G S++ NALIDMY +CG +Q +R++F M ++
Sbjct: 267 VLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERD 326
Query: 343 LVSWNVMISVY 353
++SWNVMI Y
Sbjct: 327 VISWNVMIGGY 337
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 77/333 (23%), Positives = 140/333 (42%), Gaps = 55/333 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y +G +E + LF M V P+ V AC++ +G + ++
Sbjct: 228 SWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWI 287
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
R L C +++ N+LID Y+KC L+ +
Sbjct: 288 ----------EDRGL------CSNLKLV--------------NALIDMYSKCGDLQTARE 317
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + ++D++SWN M+ GY +E L EM+ + ++P I+ +L +CA +
Sbjct: 318 LFDDMLERDVISWNVMIGGYTHMCSYKEALALF--REMLASGVEPTEITFLSILPSCAHL 375
Query: 212 KGVKLGKAIHGYVLRH-----------HIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ LGK IH Y+ ++ I L CG ++ + VF+ + + + WN++I
Sbjct: 376 GAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMI 435
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------L 308
GQ A +L + ++PN +T V +L AC + G +
Sbjct: 436 CGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKI 495
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK 341
S + +ID+ GR G +++ + M K
Sbjct: 496 SPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVK 528
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 103/251 (41%), Gaps = 45/251 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W M+G Y + Y+E + LF M+ GV P + +C+ L +GK ++ Y
Sbjct: 329 SWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAY- 387
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I+ F + ++ SLID YAKC + +
Sbjct: 388 INKNFNSVSTS-----------------------------LSTSLIDLYAKCGNIVAARQ 418
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +K K L SWNAM+ G A+ G ++ L +M ++PN I+ G+L+AC
Sbjct: 419 VFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMS--SDGIEPNEITFVGILSACKHA 476
Query: 212 KGVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTR-DVVVWNS 258
V LG+ +++ + I L G + S+ + + D +W S
Sbjct: 477 GLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGS 536
Query: 259 IISAFVRSGQV 269
++ A G+V
Sbjct: 537 LLGACRDHGRV 547
>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
Length = 758
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 116/433 (26%), Positives = 206/433 (47%), Gaps = 87/433 (20%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNVLG 44
Q HAH++ G+ L ++LL + N +++++ ++
Sbjct: 34 QAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFH 93
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
+ ++ F M+ +G+ PD+ V P KAC+ L + + V+ F+ ++ V+
Sbjct: 94 QFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQS 153
Query: 105 PLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK----QK 159
L+ ++IKC ++ +F+ M + D + ++L+ YA+ + + FS++ Q
Sbjct: 154 SLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQP 213
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+L+SWN M+AG+ G E + +M + +P+ ++S VL A ++ + +G
Sbjct: 214 NLISWNGMIAGFNHSGLYSEAVLMFLDMHL--RGFEPDGTTISSVLPAVGDLEDLVMGIL 271
Query: 220 IHGYVLRHHIHLSTAC-------GFVICSCS-----VFNQLSTRD--------------- 252
IHGYV++ + +S C + CSC+ VF+Q+ D
Sbjct: 272 IHGYVIKQGL-VSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNG 330
Query: 253 --------------------VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
VV W S+I+ ++G+ ++AL+L R++ +A VKPN+VTI
Sbjct: 331 QVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIP 390
Query: 293 SVLPACLKLAA-----------LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK 341
+LPAC +AA L +G+ T +V +ALIDMY +CG IQ SR F +P K
Sbjct: 391 CLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTK 450
Query: 342 NLVSWNVMISVYG 354
NLV WN +I+ Y
Sbjct: 451 NLVCWNAVIAGYA 463
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 164/353 (46%), Gaps = 39/353 (11%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W M+ +N G Y E V +F M +G PD V A +L+D +G ++ Y+
Sbjct: 217 SWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYV 276
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSH 150
I + CV L+D++ KC S +F++MD D N+ I ++ ++ S
Sbjct: 277 IKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSL 336
Query: 151 CKFSKIKQK----DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
F ++K + ++VSW +M+A + G E L EM++ ++PN++++ +L
Sbjct: 337 RLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQI--AGVKPNSVTIPCLLP 394
Query: 207 ACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVV 255
AC + + GKA H + LR I + CG + S F+ + T+++V
Sbjct: 395 ACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVC 454
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW 315
WN++I+ + G+ +A+++ + + KP+ ++ VL AC + + GS+ +
Sbjct: 455 WNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEE----GSYYF 510
Query: 316 NALIDMYG----------------RCGAIQKSRKIFVLMP-HKNLVSWNVMIS 351
N++ YG R G ++++ + MP + + W ++S
Sbjct: 511 NSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLS 563
>gi|147862014|emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
Length = 822
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 105/400 (26%), Positives = 194/400 (48%), Gaps = 51/400 (12%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G Q+H H+I G E L +L+ + W ++ Y
Sbjct: 193 GRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSNILHPFPWNLLISSYVR 252
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G+ ++ ++ + M+ KG+RPD+F P V KAC E D GK+V++ + + + + + V
Sbjct: 253 NGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWSLIV 312
Query: 103 KRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD- 160
L+ ++ KCG++ I LF+++ ++D + NS+I YA + F + +D
Sbjct: 313 HNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDI 372
Query: 161 ---LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
++ WN + GY G + LL +M + + ++++L L AC+ + KLG
Sbjct: 373 ELNIIIWNTIAGGYLRTGNYKGALELLSQMRKXGSHL--DSVALIIGLGACSHIGDAKLG 430
Query: 218 KAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
K IH + +R I + + C + + +F + + ++ WNSIIS
Sbjct: 431 KEIHSFAIRSCFGEVDTVKNSLITMYSRCKDLKHAYLLFQLMEAKSLISWNSIISGCCHM 490
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFV 314
+ +A LLR+++++ ++PN VTI SVLP C ++A L G +
Sbjct: 491 DRSEEASFLLREMLLSGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLL 550
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
WNAL+DMY R G + ++R++F ++ ++ +++ MI+ YG
Sbjct: 551 WNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYG 590
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 159/343 (46%), Gaps = 57/343 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W ++ G Y G Y+ + L M G D ACS + D ++GK+++ + I
Sbjct: 379 WNTIAGGYLRTGNYKGALELLSQMRKXGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAI 438
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+C F E+D V NSLI Y++C+ LK ++
Sbjct: 439 ------RSC---------------------FGEVDT---VKNSLITMYSRCKDLKHAYLL 468
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ K L+SWN++++G EE + LL EM+ + ++PN ++++ VL CA+V
Sbjct: 469 FQLMEAKSLISWNSIISGCCHMDRSEEASFLL--REMLLSGIEPNYVTIASVLPLCARVA 526
Query: 213 GVKLGKAIHGYVLRH-----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
++ GK H Y+ R H+ L A G V+ + VF+ L RD + + S+I
Sbjct: 527 NLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMI 586
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GL 308
+ + G+ AL L ++ +KP+ +T+++VL AC + Q GL
Sbjct: 587 AGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGL 646
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMI 350
+ + D++GR G + K+++I MP+K + W +I
Sbjct: 647 TPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLI 689
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 111/240 (46%), Gaps = 40/240 (16%)
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVT--NLLDEMEMIQ-TDMQPNTIS------- 200
C + Q+ S +A + L +E + NLLD + + + ++ S
Sbjct: 117 CNALESAQETFTSVDASMIDSLLTSLKEFTSRGNLLDAFKTVSLIRLHASSASQDLIVHP 176
Query: 201 LSGVLAACAQVKGVKLGKAIHGYVL-----RHHIHLSTACGFVICSCSVFNQLSTRDVVV 255
+S +L++C VK + G+ +HG+++ +H I + F S FN L V+
Sbjct: 177 ISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFY----SAFNLLVDAHVIT 232
Query: 256 ----------WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC---LKLA 302
WN +IS++VR+G AL + ++ ++P+ T SVL AC L L
Sbjct: 233 ENSNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLG 292
Query: 303 ---ALPQGLGTGSFVW-----NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + + W NALI MYG+CG + +R +F +P ++ VSWN MISVY
Sbjct: 293 FGKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYA 352
>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Cucumis sativus]
Length = 782
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 98/377 (25%), Positives = 181/377 (48%), Gaps = 60/377 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+++ YN G ++ + +F MI + V P F V +C+ + +G+ ++ ++
Sbjct: 109 SWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFV 168
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSH 150
+ + V LL+++ KCG I +F+ M ++ N+LI Y + +++
Sbjct: 169 VKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAA 228
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+F K+ +D+VSWN+M++GY+ G+ E + +M + + ++P+ +L+ +L+ACA
Sbjct: 229 SQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKM-LNEPSLKPDNFTLASILSACAN 287
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVICSC---------------------------- 242
++ + +GK IH Y+LR S A G + S
Sbjct: 288 LEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFT 347
Query: 243 ----------------SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286
+FN+L RDVV W ++I +V++G DAL+L R ++ +P
Sbjct: 348 SLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEP 407
Query: 287 NTVTIVSVLPACLKL-----------AALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIF 335
N+ T+ ++L L +A+ G + V NALI MY + G I ++++F
Sbjct: 408 NSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVF 467
Query: 336 VLMPH--KNLVSWNVMI 350
L P+ K +VSW MI
Sbjct: 468 DL-PNGKKEIVSWTSMI 483
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/349 (24%), Positives = 171/349 (48%), Gaps = 31/349 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-GVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W SM+ Y+ GY E + +F M+++ ++PD+F + AC+ L+ +GK ++ Y
Sbjct: 241 SWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAY 300
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEE---MDQDFLVNNSLIDFYAKCRYLK 147
++ + E + V L+ ++ K G +EI + E + + + SL+D Y K +K
Sbjct: 301 ILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVK 360
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
+ F+K++ +D+V+W AM+ GY G + L M+ +PN+ +L+ +L+
Sbjct: 361 PAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELF--RLMVNEGPEPNSYTLAAMLSV 418
Query: 208 CAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLS-TRDVVV 255
+ + ++ GK IH ++ I + G + + VF+ + +++V
Sbjct: 419 SSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVS 478
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV- 314
W S+I A + G +A++L ++ +KP+ +T V VL AC + + QG + +
Sbjct: 479 WTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMT 538
Query: 315 -----------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMIS 351
+ +ID+YGR G +Q++ MP + ++W +++
Sbjct: 539 EVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLA 587
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/371 (21%), Positives = 149/371 (40%), Gaps = 90/371 (24%)
Query: 71 VYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QD 129
+ + +KD G+ V+ +I + L+ + K G + +F+EM +
Sbjct: 16 ILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKS 75
Query: 130 FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
N+LI YAK +VS ++ D VSW A++ GY G + + +M
Sbjct: 76 TFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMF--AKM 133
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-----------HHIHLSTACGFV 238
I + P+ ++S VL++CA + + +G+ IH +V++ +++ CG
Sbjct: 134 ISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDP 193
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL-----RDVIVAN---------- 283
+ + VF++++ +++ WN++IS +++SGQ A RD++ N
Sbjct: 194 VIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQG 253
Query: 284 -----------------VKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVW 315
+KP+ T+ S+L AC L L G T V
Sbjct: 254 YNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVG 313
Query: 316 NALIDMYGRCGAIQ---------------------------------KSRKIFVLMPHKN 342
NALI MY + G ++ +R+IF + ++
Sbjct: 314 NALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRD 373
Query: 343 LVSWNVMISVY 353
+V+W MI Y
Sbjct: 374 VVAWTAMIVGY 384
>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Vitis vinifera]
Length = 1005
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 170/345 (49%), Gaps = 55/345 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W++++ GY EE ++LF M ++ ++P+ + AC++L ++GK ++ + +
Sbjct: 398 WSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTV 457
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+MD D +L+ YAKC + +
Sbjct: 458 K------------------------------ADMDSDLSTGTALVSMYAKCGFFTAALTT 487
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+++ +D+V+WN+++ GYA G ++ ++ + + + P+ ++ GV+ ACA +
Sbjct: 488 FNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRL--SAINPDAGTMVGVVPACALLN 545
Query: 213 GVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLS-TRDVVVWNSII 260
+ G IHG +++ H+ A CG + + +FN+ T+D V WN II
Sbjct: 546 DLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVII 605
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG----------- 309
+A++++G +A+ + + N PN+VT VSVLPA LAA +G+
Sbjct: 606 AAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFL 665
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + V N+LIDMY +CG + S K+F M HK+ VSWN M+S Y
Sbjct: 666 SNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYA 710
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 105/345 (30%), Positives = 171/345 (49%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +MM Y G + E++ LF M VR + + A +E D GK+++
Sbjct: 296 SWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIH--- 352
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
C L + +D D LV L+ YAKC + +
Sbjct: 353 --------GC-------------------ALQQRIDSDILVATPLMVMYAKCGETEKAKQ 385
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +DLV+W+A++A G+ EE +L EM+ M+PN ++L +L ACA +
Sbjct: 386 LFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQ--NQKMKPNRVTLMSILPACADL 443
Query: 212 KGVKLGKAIHGYVLRHHIH--LSTA---------CGFVICSCSVFNQLSTRDVVVWNSII 260
+KLGK+IH + ++ + LST CGF + + FN++S+RD+V WNS+I
Sbjct: 444 SLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLI 503
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LGTG 311
+ + + G +A+D+ + ++ + P+ T+V V+PAC L L QG LG
Sbjct: 504 NGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFE 563
Query: 312 S--FVWNALIDMYGRCGAIQKSRKIFVLMPH-KNLVSWNVMISVY 353
S V NALIDMY +CG++ + +F K+ V+WNV+I+ Y
Sbjct: 564 SDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAY 608
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 112/417 (26%), Positives = 178/417 (42%), Gaps = 101/417 (24%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKAC----------------- 75
W SM+ Y Y E + ++Y M++KG+ PD + V KAC
Sbjct: 97 WNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEID 156
Query: 76 ------------------SELKDYRVGKDVYDYMI------------------------- 92
S++ D + ++V+D M
Sbjct: 157 RRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVD 216
Query: 93 ---SIKFEGNACVKRPLLDLFI---KCGRMEI---TSGLFEEMDQDFLVNNSLIDFYAKC 143
S++ G LL+LF K +E+ G D V+N LID Y+KC
Sbjct: 217 FFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKC 276
Query: 144 RYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSG 203
+ V+ F ++ +D VSW M+AGYA G EV L D+M++ +++ N +S
Sbjct: 277 GDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKL--GNVRINKVSAVS 334
Query: 204 VLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRD 252
A A+ ++ GK IHG L+ I + CG + +F L RD
Sbjct: 335 AFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRD 394
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----- 307
+V W++II+A V++G +AL L +++ +KPN VT++S+LPAC L+ L G
Sbjct: 395 LVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHC 454
Query: 308 ----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L TG+ AL+ MY +CG + F M +++V+WN +I+ Y
Sbjct: 455 FTVKADMDSDLSTGT----ALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYA 507
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/332 (23%), Positives = 138/332 (41%), Gaps = 56/332 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W S++ Y +G +++FY + + PD V AC+ L D G ++ +
Sbjct: 498 TWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLI 557
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + FE + VK N+LID YAKC L +
Sbjct: 558 VKLGFESDCHVK------------------------------NALIDMYAKCGSLPSAEF 587
Query: 152 KFSKIK-QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F+K KD V+WN ++A Y G +E + +M + + PN+++ VL A A
Sbjct: 588 LFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRL--ENFHPNSVTFVSVLPAAAY 645
Query: 211 VKGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ + G A H +++ I + CG + S +FN++ +D V WN++
Sbjct: 646 LAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAM 705
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------ 307
+S + G A+ L + + V+ ++V+ VSVL AC + +G
Sbjct: 706 LSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYH 765
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+ + ++D+ GR G ++ +MP
Sbjct: 766 IKPDLEHYACMVDLLGRAGLFDETLGFIKVMP 797
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 114/241 (47%), Gaps = 26/241 (10%)
Query: 136 LIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME--MIQTD 193
LI+ Y+ ++ F + WN+M+ Y R + N EM M++
Sbjct: 69 LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYT----RSKQYNEALEMYYCMVEKG 124
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSC 242
++P+ + + VL AC ++ G HG + R + + + G + +
Sbjct: 125 LEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAR 184
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
VF+++ RDVV WN++I+ +S +A+D R + + V+P++V+++++ P KL+
Sbjct: 185 EVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLS 244
Query: 303 ALPQGLGTGSFVW---------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ +V+ N LID+Y +CG + +R++F M ++ VSW M++ Y
Sbjct: 245 NIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGY 304
Query: 354 G 354
Sbjct: 305 A 305
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 74/142 (52%), Gaps = 11/142 (7%)
Query: 221 HGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280
H + + H I+L + + SVF+ ++WNS+I A+ RS Q +AL++ ++
Sbjct: 62 HHHSITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMV 121
Query: 281 VANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQ 329
++P+ T VL AC L + GL F+ L+DMY + G ++
Sbjct: 122 EKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLK 181
Query: 330 KSRKIFVLMPHKNLVSWNVMIS 351
++R++F MP +++V+WN MI+
Sbjct: 182 RAREVFDKMPKRDVVAWNAMIA 203
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 112/390 (28%), Positives = 189/390 (48%), Gaps = 77/390 (19%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLE--VFCNWTSM--------------MGMYNVL--GYY- 46
++HAHLI + L + LLE TSM YN++ G+
Sbjct: 42 EIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQIDEPDSPAYNIMIRGFTL 101
Query: 47 ----EEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
E + LF M + V+PD F P + K CS L+ G+ ++ ++ F + V
Sbjct: 102 KQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFV 161
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
K L+ ++ CG +E+ +F+EM ++++
Sbjct: 162 KNTLIHMYANCGEVEVARRVFDEMS------------------------------ERNVR 191
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+WN+M AGY G EEV L EM++ D++ + ++L VL AC ++ ++LG+ I+
Sbjct: 192 TWNSMFAGYTKSGNWEEVVKLFH--EMLELDIRFDEVTLVSVLTACGRLADLELGEWINR 249
Query: 223 YV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
YV L+ + L T+ CG V + +F+Q+ RDVV W+++IS + ++ + +
Sbjct: 250 YVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCRE 309
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNALID 320
ALDL ++ AN+ PN +T+VS+L +C L AL G F+ AL+D
Sbjct: 310 ALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMD 369
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
Y +CG+++ S ++F MP KN++SW V+I
Sbjct: 370 FYAKCGSVESSIEVFGKMPVKNVLSWTVLI 399
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/393 (24%), Positives = 177/393 (45%), Gaps = 77/393 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G Q+HA ++ CG F+ + L+ ++ N W SM Y
Sbjct: 143 GEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTK 202
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G +EE+V LF+ M++ +R D V AC L D +G+ + Y+ +GN +
Sbjct: 203 SGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTL 262
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L+D++ KCG+++ LF++MD ++D+V
Sbjct: 263 ITSLVDMYAKCGQVDTARRLFDQMD------------------------------RRDVV 292
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+W+AM++GY+ E +L EM+ + ++ PN I++ +L++CA + ++ GK +H
Sbjct: 293 AWSAMISGYSQASRCREALDLFHEMQ--KANIDPNEITMVSILSSCAVLGALETGKWVHF 350
Query: 223 YVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
++ + + L+ CG V S VF ++ ++V+ W +I +GQ
Sbjct: 351 FIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKK 410
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------LGTGSFV--WNALI 319
AL+ ++ NV+PN VT + VL AC + +G G + + ++
Sbjct: 411 ALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMV 470
Query: 320 DMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMIS 351
D+ GR G I+++ + MP N V W +++
Sbjct: 471 DILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLA 503
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 117/224 (52%), Gaps = 24/224 (10%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F +I + D ++N M+ G+ L E L EM + +QP+ + +L C++++
Sbjct: 81 FRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMH--ENSVQPDEFTFPCILKVCSRLQ 138
Query: 213 GVKLGKAIH-----------GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ G+ IH G+V IH+ CG V + VF+++S R+V WNS+ +
Sbjct: 139 ALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFA 198
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGT 310
+ +SG + + L +++ +++ + VT+VSVL AC +LA L +GL
Sbjct: 199 GYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKG 258
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ +L+DMY +CG + +R++F M +++V+W+ MIS Y
Sbjct: 259 NPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYS 302
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 11/124 (8%)
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ S+F Q+ D +N +I F +A+ L +++ +V+P+ T +L C +
Sbjct: 77 AVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSR 136
Query: 301 LAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L AL +G G+ FV N LI MY CG ++ +R++F M +N+ +WN M
Sbjct: 137 LQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSM 196
Query: 350 ISVY 353
+ Y
Sbjct: 197 FAGY 200
>gi|255559020|ref|XP_002520533.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540375|gb|EEF41946.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 547
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 105/383 (27%), Positives = 182/383 (47%), Gaps = 84/383 (21%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEV---------------------FCNWTSMMGMYNV 42
G +HA LIV G+ S+L+ F T ++G Y+
Sbjct: 48 GKHLHARLIVSGLASSNNFASKLISFYTETRQLSIVRKLFDRIPKPNFYQRTVLIGAYSR 107
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G+Y++++++F M ++ +RP+ FV P V +AC + D + GK ++ ++ FE
Sbjct: 108 HGFYQDVLDVFSEMQNERLRPNKFVIPSVLRACGHVFDLQTGKILHSVILRHLFES---- 163
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
D +VN +LID Y++CR+++ + F +++KDLV
Sbjct: 164 --------------------------DVVVNTALIDMYSRCRHVEKARKVFDGMQEKDLV 197
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+ NAM+ GYA GF +E L+++M+M+ D++PN ++ + +++ AQ + + + G
Sbjct: 198 ALNAMVLGYAQNGFAKEGFLLVEQMQML--DIKPNLVTWNTLISGFAQAGDKVMVQELFG 255
Query: 223 YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
+ H GF DV+ W S+IS FV++ A + ++
Sbjct: 256 LMSMH--------GF------------EPDVISWTSVISRFVQNSHNEAAFAAFKQMLQH 295
Query: 283 NVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKS 331
PN+ TI S+LPAC LA A G+ +V +A++DMY +CG I ++
Sbjct: 296 GAYPNSATISSLLPACASLANVRHGRELHGYAFAIGVEEDIYVRSAIVDMYSKCGLISEA 355
Query: 332 RKIFVLMPHKNLVSWNVMISVYG 354
R +F MP ++ V+WN MI Y
Sbjct: 356 RMLFSKMPERHTVTWNSMIFGYA 378
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 89/189 (47%), Gaps = 31/189 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTS++ + + E F M+ G P+ + AC+ L + R G++++ Y
Sbjct: 268 SWTSVISRFVQNSHNEAAFAAFKQMLQHGAYPNSATISSLLPACASLANVRHGRELHGYA 327
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+I E +D V ++++D Y+KC + +
Sbjct: 328 FAIGVE------------------------------EDIYVRSAIVDMYSKCGLISEARM 357
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FSK+ ++ V+WN+M+ GYA G+ +E L ++ME + + + +S + VL AC+
Sbjct: 358 LFSKMPERHTVTWNSMIFGYANHGYCDEAIELFNQMEKTEAK-KIDHLSFTAVLTACSHG 416
Query: 212 KGVKLGKAI 220
+ V+LG+++
Sbjct: 417 RLVELGQSL 425
>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 760
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 113/433 (26%), Positives = 204/433 (47%), Gaps = 89/433 (20%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCNW---------------------TSMMGMYNVLG 44
Q HA ++ G + ++ ++L+ + N+ +S++
Sbjct: 36 QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAK 95
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
+ + + +F M G+ PD V P ++K C+EL ++ GK ++ + +A V+
Sbjct: 96 LFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQG 155
Query: 105 PLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLK-----VSHCKFSKIKQ 158
L ++++CGRM +F+ M ++D + ++L+ YA+ L+ +S + S I +
Sbjct: 156 SLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGI-E 214
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
++VSWN +L+G+ G+ +E + +M + P+ +++S VL + + + +G+
Sbjct: 215 PNIVSWNGILSGFNRSGYHKEAVIMFQKMHHL--GFCPDQVTVSSVLPSVGDSENLNMGR 272
Query: 219 AIHGYVLRHHIHLSTAC------------GFVICSCSVFNQLSTRD-------------- 252
IHGYV++ + L C G V +F++ +
Sbjct: 273 QIHGYVIKQGL-LKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRN 331
Query: 253 ---------------------VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI 291
VV W SII+ ++G+ ++AL+L R++ VA VKPN VTI
Sbjct: 332 GLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTI 391
Query: 292 VSVLPACLKLAALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMPH 340
S+LPAC +AAL G T F V +ALIDMY +CG I+ S+ +F +MP
Sbjct: 392 PSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPT 451
Query: 341 KNLVSWNVMISVY 353
KNLV WN +++ Y
Sbjct: 452 KNLVCWNSLMNGY 464
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 165/336 (49%), Gaps = 30/336 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W ++ +N GY++E V +F M G PD V + + ++ +G+ ++ Y+
Sbjct: 219 SWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYV 278
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSH 150
I + CV +LD++ K G + LF+E + + V N+ I ++ + +
Sbjct: 279 IKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKAL 338
Query: 151 CKFSKIKQK----DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
F K++ ++VSW +++AG A G E L EM++ ++PN +++ +L
Sbjct: 339 EMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQV--AGVKPNRVTIPSMLP 396
Query: 207 ACAQVKGVKLGKAIHGYVLRHH----IHLSTA-------CGFVICSCSVFNQLSTRDVVV 255
AC + + G++ HG+ +R H +H+ +A CG + S VFN + T+++V
Sbjct: 397 ACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVC 456
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV- 314
WNS+++ + G+ + + + ++ +KP+ ++ S+L AC ++ +G + +
Sbjct: 457 WNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMS 516
Query: 315 -----------WNALIDMYGRCGAIQKSRKIFVLMP 339
++ ++++ GR G +Q++ + +P
Sbjct: 517 EEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIP 552
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 96/202 (47%), Gaps = 33/202 (16%)
Query: 11 LIVCGVELCAFLGSQLLEV-FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCP 69
L+ +E+ Q +E+ +WTS++ G E + LF M GV+P+ P
Sbjct: 333 LVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIP 392
Query: 70 KVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQD 129
+ AC + G+ + + + + LLD D
Sbjct: 393 SMLPACGNIAALGHGRSTHGFAVRVH----------LLD--------------------D 422
Query: 130 FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
V ++LID YAKC +K+S F+ + K+LV WN+++ GY++ G +EV ++ + +
Sbjct: 423 VHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIFE--SL 480
Query: 190 IQTDMQPNTISLSGVLAACAQV 211
++T ++P+ IS + +L+AC QV
Sbjct: 481 MRTRLKPDFISFTSLLSACGQV 502
>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
Length = 1005
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 170/345 (49%), Gaps = 55/345 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W++++ GY EE ++LF M ++ ++P+ + AC++L ++GK ++ + +
Sbjct: 398 WSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTV 457
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+MD D +L+ YAKC + +
Sbjct: 458 K------------------------------ADMDSDLSTGTALVSMYAKCGFFTAALTT 487
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+++ +D+V+WN+++ GYA G ++ ++ + + + P+ ++ GV+ ACA +
Sbjct: 488 FNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRL--SAINPDAGTMVGVVPACALLN 545
Query: 213 GVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLS-TRDVVVWNSII 260
+ G IHG +++ H+ A CG + + +FN+ T+D V WN II
Sbjct: 546 DLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVII 605
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG----------- 309
+A++++G +A+ + + N PN+VT VSVLPA LAA +G+
Sbjct: 606 AAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFL 665
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + V N+LIDMY +CG + S K+F M HK+ VSWN M+S Y
Sbjct: 666 SNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYA 710
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 105/345 (30%), Positives = 171/345 (49%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +MM Y G + E++ LF M VR + + A +E D GK+++
Sbjct: 296 SWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIH--- 352
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
C L + +D D LV L+ YAKC + +
Sbjct: 353 --------GC-------------------ALQQRIDSDILVATPLMVMYAKCGETEKAKQ 385
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +DLV+W+A++A G+ EE +L EM+ M+PN ++L +L ACA +
Sbjct: 386 LFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQ--NQKMKPNRVTLMSILPACADL 443
Query: 212 KGVKLGKAIHGYVLRHHIH--LSTA---------CGFVICSCSVFNQLSTRDVVVWNSII 260
+KLGK+IH + ++ + LST CGF + + FN++S+RD+V WNS+I
Sbjct: 444 SLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLI 503
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LGTG 311
+ + + G +A+D+ + ++ + P+ T+V V+PAC L L QG LG
Sbjct: 504 NGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFE 563
Query: 312 S--FVWNALIDMYGRCGAIQKSRKIFVLMPH-KNLVSWNVMISVY 353
S V NALIDMY +CG++ + +F K+ V+WNV+I+ Y
Sbjct: 564 SDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAY 608
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 112/417 (26%), Positives = 178/417 (42%), Gaps = 101/417 (24%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKAC----------------- 75
W SM+ Y Y E + ++Y M++KG+ PD + V KAC
Sbjct: 97 WNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEID 156
Query: 76 ------------------SELKDYRVGKDVYDYMI------------------------- 92
S++ D + ++V+D M
Sbjct: 157 RRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVD 216
Query: 93 ---SIKFEGNACVKRPLLDLFI---KCGRMEI---TSGLFEEMDQDFLVNNSLIDFYAKC 143
S++ G LL+LF K +E+ G D V+N LID Y+KC
Sbjct: 217 FFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKC 276
Query: 144 RYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSG 203
+ V+ F ++ +D VSW M+AGYA G EV L D+M++ +++ N +S
Sbjct: 277 GDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKL--GNVRINKVSAVS 334
Query: 204 VLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRD 252
A A+ ++ GK IHG L+ I + CG + +F L RD
Sbjct: 335 AFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRD 394
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----- 307
+V W++II+A V++G +AL L +++ +KPN VT++S+LPAC L+ L G
Sbjct: 395 LVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHC 454
Query: 308 ----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L TG+ AL+ MY +CG + F M +++V+WN +I+ Y
Sbjct: 455 FTVKADMDSDLSTGT----ALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYA 507
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/332 (23%), Positives = 138/332 (41%), Gaps = 56/332 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W S++ Y +G +++FY + + PD V AC+ L D G ++ +
Sbjct: 498 TWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLI 557
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + FE + VK N+LID YAKC L +
Sbjct: 558 VKLGFESDCHVK------------------------------NALIDMYAKCGSLPSAEF 587
Query: 152 KFSKIK-QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F+K KD V+WN ++A Y G +E + +M + + PN+++ VL A A
Sbjct: 588 LFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRL--ENFHPNSVTFVSVLPAAAY 645
Query: 211 VKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ + G A H +++ I + CG + S +FN++ +D V WN++
Sbjct: 646 LAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAM 705
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------ 307
+S + G A+ L + + V+ ++V+ VSVL AC + +G
Sbjct: 706 LSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYH 765
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+ + ++D+ GR G ++ +MP
Sbjct: 766 IKPDLEHYACMVDLLGRAGLFDETLGFIKVMP 797
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 114/241 (47%), Gaps = 26/241 (10%)
Query: 136 LIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME--MIQTD 193
LI+ Y+ ++ F + WN+M+ Y R + N EM M++
Sbjct: 69 LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYT----RSKQYNEALEMYYCMVEKG 124
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSC 242
++P+ + + VL AC ++ G HG + R + + + G + +
Sbjct: 125 LEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAR 184
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
VF+++ RDVV WN++I+ +S +A+D R + + V+P++V+++++ P KL+
Sbjct: 185 EVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLS 244
Query: 303 ALPQGLGTGSFVW---------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ +V+ N LID+Y +CG + +R++F M ++ VSW M++ Y
Sbjct: 245 NIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGY 304
Query: 354 G 354
Sbjct: 305 A 305
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 74/142 (52%), Gaps = 11/142 (7%)
Query: 221 HGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280
H + + H I+L + + SVF+ ++WNS+I A+ RS Q +AL++ ++
Sbjct: 62 HHHSITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMV 121
Query: 281 VANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQ 329
++P+ T VL AC L + GL F+ L+DMY + G ++
Sbjct: 122 EKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLK 181
Query: 330 KSRKIFVLMPHKNLVSWNVMIS 351
++R++F MP +++V+WN MI+
Sbjct: 182 RAREVFDKMPKRDVVAWNAMIA 203
>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Vitis vinifera]
Length = 709
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 104/348 (29%), Positives = 168/348 (48%), Gaps = 33/348 (9%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ Y G + ++ F M+ G PDH V P V K+C+ +KD R G+ V+ +I
Sbjct: 74 WKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCII 133
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAK----CRYLKV 148
+ + L++++ K +E + + D+ D Y+K YL
Sbjct: 134 RLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDE-----GKTSDVYSKKEKESYYLGS 188
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
F + ++D+VSWN +++G A G E+ ++ EM D++P++ +LS VL
Sbjct: 189 LRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMG--NADLRPDSFTLSSVLPIF 246
Query: 209 AQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWN 257
A+ + GK IHGY +R+ I + C V SC VF L D + WN
Sbjct: 247 AEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWN 306
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------- 307
SII+ V++G + L + +++A +KPN V+ S++PAC L L G
Sbjct: 307 SIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRS 366
Query: 308 -LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
F+ +AL+DMY +CG I+ +R IF M ++VSW MI Y
Sbjct: 367 RFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYA 414
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/323 (23%), Positives = 142/323 (43%), Gaps = 55/323 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ G +E+ + + M + +RPD F V +E + GK+++ Y
Sbjct: 203 SWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYA 262
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + D D + +SLID YAKC + S
Sbjct: 263 IRNGY------------------------------DADVFIGSSLIDMYAKCTRVDDSCR 292
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + Q D +SWN+++AG G +E +M + + ++PN +S S ++ ACA +
Sbjct: 293 VFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAK--IKPNHVSFSSIMPACAHL 350
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ LGK +HGY++R + + CG + + +F+++ D+V W ++I
Sbjct: 351 TTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMI 410
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------L 308
+ G DA+ L + + V VKPN V ++VL AC + + +
Sbjct: 411 MGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRI 470
Query: 309 GTGSFVWNALIDMYGRCGAIQKS 331
G + A+ D+ GR G ++++
Sbjct: 471 IPGLEHYAAVADLLGRVGRLEEA 493
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/380 (20%), Positives = 154/380 (40%), Gaps = 103/380 (27%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G ++H + I G + F+GS L++++ +W S++
Sbjct: 255 GKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQ 314
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G ++E + F M+ ++P+H + AC+ L +GK ++ Y+I +F+GN
Sbjct: 315 NGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNV-- 372
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+ ++L+D YAKC ++ + F K++ D+V
Sbjct: 373 ----------------------------FIASALVDMYAKCGNIRTARWIFDKMELYDMV 404
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW AM+ GYAL G + +L ME+ ++PN ++ VL AC+
Sbjct: 405 SWTAMIMGYALHGHAYDAISLFKRMEV--EGVKPNYVAFMAVLTACSH------------ 450
Query: 223 YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVV-----WNSIISAFVRSGQVVDALDLLR 277
G V + FN ++ ++ + ++ R G++ +A + +
Sbjct: 451 ------------AGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFIS 498
Query: 278 DVIVANVKPNTVTIVSVLPAC-----LKLAAL---------PQGLGTGSFVWNALIDMYG 323
D+ +++P ++L AC ++LA PQ +G + L ++Y
Sbjct: 499 DM---HIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIG----AYVLLSNIYS 551
Query: 324 RCGAIQKSRKIFVLMPHKNL 343
G + +RK+ + M K +
Sbjct: 552 AAGRWKDARKLRIAMRDKGM 571
>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
Length = 760
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 116/433 (26%), Positives = 206/433 (47%), Gaps = 87/433 (20%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNVLG 44
Q HAH++ G+ L ++LL + N +++++ ++
Sbjct: 34 QAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFH 93
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
+ ++ F M+ +G+ PD+ V P KAC+ L + + V+ F+ ++ V+
Sbjct: 94 QFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQS 153
Query: 105 PLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK----QK 159
L+ ++IKC ++ +F+ M + D + ++L+ YA+ + + FS++ Q
Sbjct: 154 SLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQP 213
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+L+SWN M+AG+ G E + +M + +P+ ++S VL A ++ + +G
Sbjct: 214 NLISWNGMIAGFNHSGLYSEAVLMFLDMHL--RGFEPDGTTISSVLPAVGDLEDLVMGIL 271
Query: 220 IHGYVLRHHIHLSTAC-------GFVICSCS-----VFNQLSTRD--------------- 252
IHGYV++ + +S C + CSC+ VF+Q+ D
Sbjct: 272 IHGYVIKQGL-VSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNG 330
Query: 253 --------------------VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
VV W S+I+ ++G+ ++AL+L R++ +A VKPN+VTI
Sbjct: 331 QVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIP 390
Query: 293 SVLPACLKLAA-----------LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK 341
+LPAC +AA L +G+ T +V +ALIDMY +CG IQ SR F +P K
Sbjct: 391 CLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTK 450
Query: 342 NLVSWNVMISVYG 354
NLV WN +I+ Y
Sbjct: 451 NLVCWNAVIAGYA 463
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 164/353 (46%), Gaps = 39/353 (11%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W M+ +N G Y E V +F M +G PD V A +L+D +G ++ Y+
Sbjct: 217 SWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYV 276
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSH 150
I + CV L+D++ KC S +F++MD D N+ I ++ ++ S
Sbjct: 277 IKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSL 336
Query: 151 CKFSKIKQK----DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
F ++K + ++VSW +M+A + G E L EM++ ++PN++++ +L
Sbjct: 337 RLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQI--AGVKPNSVTIPCLLP 394
Query: 207 ACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVV 255
AC + + GKA H + LR I + CG + S F+ + T+++V
Sbjct: 395 ACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVC 454
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW 315
WN++I+ + G+ +A+++ + + KP+ ++ VL AC + + GS+ +
Sbjct: 455 WNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEE----GSYYF 510
Query: 316 NALIDMYG----------------RCGAIQKSRKIFVLMP-HKNLVSWNVMIS 351
N++ YG R G ++++ + MP + + W ++S
Sbjct: 511 NSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLS 563
>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 952
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 178/343 (51%), Gaps = 54/343 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S+ Y G+ ++ +N+F M V+ + + CS+L+D + GK+++ +++
Sbjct: 109 WNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVV 168
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
M +D V+++ ++FYAKC ++ +
Sbjct: 169 R------------------------------HGMVEDVFVSSAFVNFYAKCLCVREAQTV 198
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + +D+V+WN++ + Y GF ++ N+ EM+ ++P+ +++S +L+AC+ ++
Sbjct: 199 FDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVF--REMVLDGVKPDPVTVSCILSACSDLQ 256
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+K GKAIHG+ L+H ++L +C V + +VF+ + R+V+ WNS+ S
Sbjct: 257 DLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLAS 316
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGT 310
+V G L++ R++ + VKP+ + + S+LPAC +L A+ G+
Sbjct: 317 CYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVE 376
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
FV AL+++Y C +++++ +F LMPH+N+V+WN + S Y
Sbjct: 377 DVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCY 419
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 177/343 (51%), Gaps = 54/343 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S+ Y G+ ++ +N+F M+ GV+PD + ACS+L+D + GK ++ +
Sbjct: 210 WNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGF-- 267
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
L M ++ V+N+L++ Y C ++ +
Sbjct: 268 ----------------------------ALKHGMVENVFVSNALVNLYESCLCVREAQAV 299
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + +++++WN++ + Y GF ++ N+ EM + ++P+ +++S +L AC+Q+K
Sbjct: 300 FDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGL--NGVKPDPMAMSSILPACSQLK 357
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+K GK IHG+ ++H ++L C V + +VF+ + R+VV WNS+ S
Sbjct: 358 DLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSS 417
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGT 310
+V G L++ R++++ VKP+ VT++S+L AC L A+ G+
Sbjct: 418 CYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVE 477
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
FV NAL+ +Y +C +++++ +F L+PH+ + SWN +++ Y
Sbjct: 478 DVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAY 520
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 165/332 (49%), Gaps = 54/332 (16%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G E + ++ +G++PD V V KAC+ +D K +D
Sbjct: 19 GLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDAT----------- 67
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
+CG M D + N+ I Y KC+ ++ + F + +D+V+
Sbjct: 68 --------RCGVM-----------SDVSIGNAFIHAYGKCKCVEGARRVFDDLVARDVVT 108
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
WN++ A Y GF ++ N+ +M + ++ N +++S +L C+ ++ +K GK IHG+
Sbjct: 109 WNSLSACYVNCGFPQQGLNVFRKMGL--NKVKANPLTVSSILPGCSDLQDLKSGKEIHGF 166
Query: 224 VLRH----HIHLSTA--CGFVICSC-----SVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
V+RH + +S+A + C C +VF+ + RDVV WNS+ S +V G
Sbjct: 167 VVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKG 226
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDM 321
L++ R++++ VKP+ VT+ +L AC L AL G+ FV NAL+++
Sbjct: 227 LNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNL 286
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
Y C +++++ +F LMPH+N+++WN + S Y
Sbjct: 287 YESCLCVREAQAVFDLMPHRNVITWNSLASCY 318
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/379 (24%), Positives = 167/379 (44%), Gaps = 89/379 (23%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S+ Y G+ ++ +N+F M GV+PD + ACS+LKD + GK ++ + +
Sbjct: 311 WNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAV 370
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
M +D V +L++ YA C ++ +
Sbjct: 371 K------------------------------HGMVEDVFVCTALVNLYANCLCVREAQTV 400
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + +++V+WN++ + Y GF ++ N+ EM+ ++P+ +++ +L AC+ ++
Sbjct: 401 FDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVF--REMVLNGVKPDLVTMLSILHACSDLQ 458
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+K GK IHG+ +RH + L C V + VF+ + R+V WN I++
Sbjct: 459 DLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILT 518
Query: 262 AF-----------------------------------VRSGQVVDALDLLRDVIVANVKP 286
A+ V++ ++ +A+++ R + KP
Sbjct: 519 AYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKP 578
Query: 287 NTVTIVSVLPACLKLAALPQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIF 335
+ TI S+L AC L G +V+ NAL+DMY +CG + SR +F
Sbjct: 579 DETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVF 638
Query: 336 VLMPHKNLVSWNVMISVYG 354
+MP K++ SWN MI G
Sbjct: 639 DMMPIKDVFSWNTMIFANG 657
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/349 (22%), Positives = 161/349 (46%), Gaps = 33/349 (9%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S+ Y G+ ++ +N+F M+ GV+PD + ACS+L+D + GK ++ + +
Sbjct: 412 WNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAV 471
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLV--NNSLIDFYAKCRYLKVSH 150
+ V LL L+ KC + +F+ + + N L ++ Y K +
Sbjct: 472 RHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLY 531
Query: 151 CKFSKIKQK----DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
FS++ + D ++W+ ++ G EE + +M+ + +P+ ++ +L
Sbjct: 532 -MFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTM--GFKPDETTIYSILR 588
Query: 207 ACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVV 255
AC+ + +++GK IH YV RH + + CG + S +VF+ + +DV
Sbjct: 589 ACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFS 648
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV- 314
WN++I A G +AL L ++++ VKP++ T VL AC + +G+ + +
Sbjct: 649 WNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMS 708
Query: 315 -----------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMIS 351
+ ++D+Y R G ++++ MP ++W ++
Sbjct: 709 RDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLA 757
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 96/354 (27%), Positives = 185/354 (52%), Gaps = 28/354 (7%)
Query: 14 CGVELCAFLGSQLLE----VFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCP 69
CG A+L +++E +W SM+ + GY ++ ++LF M ++GV P+
Sbjct: 288 CGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMV 347
Query: 70 KVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQD 129
V AC++ + +G+ V DY+ + N V +D+F+KCG +EI GLF+ M++
Sbjct: 348 SVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKR 407
Query: 130 FLVN-NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
+V+ ++ID YAK ++ F + +KD+ +WN +++GY G +E + E++
Sbjct: 408 DVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQ 467
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS-----------TACGF 237
+ ++ +P+ ++L L+ACAQ+ + +G+ IHGY+ + I L+ + G
Sbjct: 468 LTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGD 527
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
V + VF+ + +DV VW+++I+ G+ A++L D+ VKPN+VT ++L A
Sbjct: 528 VEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCA 587
Query: 298 CLKLAALPQ------------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
C + + G+ + ++ ++D+ GR G ++++ K MP
Sbjct: 588 CSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMP 641
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/362 (24%), Positives = 161/362 (44%), Gaps = 89/362 (24%)
Query: 47 EEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPL 106
+ ++ ++ D P+ F P + KA +E + + VGK V+ I F
Sbjct: 222 QSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSF---------- 271
Query: 107 LDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK--QKDLVSW 164
D V NSLI FYA C +L +++ F I+ KD+VSW
Sbjct: 272 --------------------GDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSW 311
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
N+M+ G+ GG+ ++ +L + M + PN +++ V++ACA+ + LG+ + Y+
Sbjct: 312 NSMVTGFVQGGYPDKALDLFERMR--NEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYI 369
Query: 225 LRHH-----------IHLSTACGFVICSCSVFNQLSTRDVV------------------- 254
R+ I + CG V + +F+ + RDVV
Sbjct: 370 DRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIAR 429
Query: 255 ------------VWNSIISAFVRSGQVVDALDLLRDVIV--ANVKPNTVTIVSVLPACLK 300
WN +IS + +SG+ +AL + R++ + + +P+ VT++S L AC +
Sbjct: 430 DIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQ 489
Query: 301 LAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L A+ G ++ +LIDMY + G ++K+ ++F + +K++ W+ M
Sbjct: 490 LGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAM 549
Query: 350 IS 351
I+
Sbjct: 550 IA 551
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 113/227 (49%), Gaps = 27/227 (11%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ-TDMQPNTISLSGVLAACAQV 211
F +I Q +L SWN ++ AL + + ++L + M+ + PN + ++ A A+
Sbjct: 196 FDQIPQPNLYSWNILI--RALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAER 253
Query: 212 KGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQL--STRDVVVWNS 258
+ +GKA+HG +VL IH +CG + + VF + + +D+V WNS
Sbjct: 254 RCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNS 313
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF----- 313
+++ FV+ G ALDL + V PN VT+VSV+ AC K L G +
Sbjct: 314 MVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNE 373
Query: 314 ------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V NA IDM+ +CG ++ +R +F M +++VSW +I Y
Sbjct: 374 MMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYA 420
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 86/206 (41%), Gaps = 29/206 (14%)
Query: 177 REEVTNLLDEMEMIQTDMQPNTISLSGV--LAACAQVKGVKLGKAIHGYVLR-HHIH--- 230
+EE N + + + P + + + V A Q K K IH +LR + +H
Sbjct: 113 KEEWINSIGRSIVQHSSPTPASATATNVGDRALFQQCTSFKQLKQIHAQMLRTNKLHDPY 172
Query: 231 ----LSTACGFVICSC-----SVFNQLSTRDVVVWNSIISAFVRSGQVVDA-LDLLRDVI 280
L TA F S VF+Q+ ++ WN +I A S + + L +R +
Sbjct: 173 AASELFTAAAFSSFSALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLH 232
Query: 281 VANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQ 329
+ PN T ++ A + A+ G FV N+LI Y CG +
Sbjct: 233 DSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLD 292
Query: 330 KSRKIFVLMP--HKNLVSWNVMISVY 353
+ +F ++ +K++VSWN M++ +
Sbjct: 293 LAYLVFEMIEGNNKDIVSWNSMVTGF 318
>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 730
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 104/400 (26%), Positives = 190/400 (47%), Gaps = 51/400 (12%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G Q+H +I G E + +L+ + N W ++ Y
Sbjct: 112 GKQLHTLIISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNLLISSYVR 171
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G + E ++ + M KG+RPD F P V KAC E D GK ++ + + N V
Sbjct: 172 NGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASCLGWNLFV 231
Query: 103 KRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK---- 157
L+ ++ K G + LFE M ++D + N++I YA K + F K++
Sbjct: 232 HNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFGKMRVEGI 291
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+ ++++WN + G G EE LL M DM ++++ L AC+ + +KLG
Sbjct: 292 ELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDM--DSVATIIGLGACSHIGAIKLG 349
Query: 218 KAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
+ IHG +R I + + C ++ + ++F T++++ WNS++S +
Sbjct: 350 REIHGSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYTHM 409
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGSF-----V 314
+ +A L R+++++ ++PN VTI S+LP C ++A L G L F +
Sbjct: 410 DRSEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYLLL 469
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
WN+L+DMY R G + +++++F + ++ V++ +I+ YG
Sbjct: 470 WNSLVDMYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYG 509
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 83/339 (24%), Positives = 166/339 (48%), Gaps = 31/339 (9%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G ++E LF M +G+ + + C + ++ ++ +M
Sbjct: 262 SWNTMISGYASKGMWKEAFELFGKMRVEGIELNIITWNTIAGGCVQSGNFEEALELLSHM 321
Query: 92 ISIKFEGNACVKRPLLDL-----FIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL 146
S + ++ L IK GR S + D V N+LI Y++C+YL
Sbjct: 322 RSYGIDMDSVATIIGLGACSHIGAIKLGREIHGSAIRSFYDGVDNVKNALITMYSRCKYL 381
Query: 147 KVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
+ ++ F + K++++WN+ML+GY EE + L EM+ + ++PN ++++ +L
Sbjct: 382 RHAYNLFQSTRTKNIITWNSMLSGYTHMDRSEEASFLF--REMLLSGIEPNYVTIASILP 439
Query: 207 ACAQVKGVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVV 254
CA+V ++ GK H Y+LR + + G V+ + +F+ +S RD V
Sbjct: 440 LCARVANLQHGKEFHCYILRRAGFKDYLLLWNSLVDMYARSGKVLEAKRLFDSISRRDEV 499
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV 314
+ S+I+ + G+ +AL L ++ ++KP+ VT+V+VL AC + +G+ +
Sbjct: 500 TYTSLIAGYGIQGEGREALKLFDEMKKRHIKPDHVTMVAVLSACSHSGLVTEGIKLFELM 559
Query: 315 WNA------------LIDMYGRCGAIQKSRKIFVLMPHK 341
+A ++D++GR G + K++++ MP++
Sbjct: 560 PSAYGIIPRLEHFACMVDLFGRAGLLHKAKEMITRMPYR 598
>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Cucumis sativus]
Length = 782
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/377 (25%), Positives = 181/377 (48%), Gaps = 60/377 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+++ YN G ++ + +F MI + V P F V +C+ + +G+ ++ ++
Sbjct: 109 SWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFV 168
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSH 150
+ + V LL+++ KCG I +F+ M ++ N+LI Y + +++
Sbjct: 169 VKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAA 228
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+F K+ +D+VSWN+M++GY+ G+ E + +M + + ++P+ +L+ +L+ACA
Sbjct: 229 SQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKM-LNEPSLKPDNFTLASILSACAN 287
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVICSC---------------------------- 242
++ + +GK IH Y+LR S A G + S
Sbjct: 288 LEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFT 347
Query: 243 ----------------SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286
+FN+L RDVV W ++I +V++G DAL+L R ++ +P
Sbjct: 348 SLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEP 407
Query: 287 NTVTIVSVLPACLKL-----------AALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIF 335
N+ T+ ++L L +A+ G + V NALI MY + G I ++++F
Sbjct: 408 NSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVF 467
Query: 336 VLMPH--KNLVSWNVMI 350
L P+ K +VSW MI
Sbjct: 468 DL-PNGKKEIVSWTSMI 483
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/349 (24%), Positives = 171/349 (48%), Gaps = 31/349 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-GVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W SM+ Y+ GY E + +F M+++ ++PD+F + AC+ L+ +GK ++ Y
Sbjct: 241 SWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAY 300
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEE---MDQDFLVNNSLIDFYAKCRYLK 147
++ + E + V L+ ++ K G +EI + E + + + SL+D Y K +K
Sbjct: 301 ILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVK 360
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
+ F+K++ +D+V+W AM+ GY G + L M+ +PN+ +L+ +L+
Sbjct: 361 PAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELF--RLMVNEGPEPNSYTLAAMLSV 418
Query: 208 CAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLS-TRDVVV 255
+ + ++ GK IH ++ I + G + + VF+ + +++V
Sbjct: 419 SSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVS 478
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV- 314
W S+I A + G +A++L ++ +KP+ +T V VL AC + + QG + +
Sbjct: 479 WTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMT 538
Query: 315 -----------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMIS 351
+ +ID+YGR G +Q++ MP + ++W +++
Sbjct: 539 EVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLA 587
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/371 (21%), Positives = 149/371 (40%), Gaps = 90/371 (24%)
Query: 71 VYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QD 129
+ + +KD G+ V+ +I + L+ + K G + +F+EM +
Sbjct: 16 ILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKS 75
Query: 130 FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
N+LI YAK +VS ++ D VSW A++ GY G + + +M
Sbjct: 76 TFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMF--AKM 133
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-----------HHIHLSTACGFV 238
I + P+ ++S VL++CA + + +G+ IH +V++ +++ CG
Sbjct: 134 ISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDP 193
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL-----RDVIVAN---------- 283
+ + VF++++ +++ WN++IS +++SGQ A RD++ N
Sbjct: 194 VIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQG 253
Query: 284 -----------------VKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVW 315
+KP+ T+ S+L AC L L G T V
Sbjct: 254 YNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVG 313
Query: 316 NALIDMYGRCGAIQ---------------------------------KSRKIFVLMPHKN 342
NALI MY + G ++ +R+IF + ++
Sbjct: 314 NALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRD 373
Query: 343 LVSWNVMISVY 353
+V+W MI Y
Sbjct: 374 VVAWTAMIVGY 384
>gi|18409250|ref|NP_564961.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75168871|sp|Q9C507.1|PP111_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial; Flags: Precursor
gi|12325094|gb|AAG52503.1|AC018364_21 hypothetical protein; 27026-24663 [Arabidopsis thaliana]
gi|12597785|gb|AAG60097.1|AC073178_8 PPR-repeat protein, putative [Arabidopsis thaliana]
gi|332196793|gb|AEE34914.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 787
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 108/393 (27%), Positives = 183/393 (46%), Gaps = 75/393 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLL-------------EVF--------CNWTSMMGM 39
+ +G +VH +I GV+ A + + LL +VF W++++
Sbjct: 117 LSVGGKVHGRIIKGGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSS 176
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
G + + +F M+D GV PD V + C+EL R+ + V+
Sbjct: 177 CLENGEVVKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHG---------- 226
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+IT +F D D + NSL+ Y+KC L S F KI +K
Sbjct: 227 -----------------QITRKMF---DLDETLCNSLLTMYSKCGDLLSSERIFEKIAKK 266
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+ VSW AM++ Y G F E+ L EMI++ ++PN ++L VL++C + ++ GK+
Sbjct: 267 NAVSWTAMISSYNRGEFSEKA--LRSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKS 324
Query: 220 IHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
+HG+ +R + L CG + +V +S R++V WNS+IS + G
Sbjct: 325 VHGFAVRRELDPNYESLSLALVELYAECGKLSDCETVLRVVSDRNIVAWNSLISLYAHRG 384
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG----------TGSFVWNA 317
V+ AL L R ++ +KP+ T+ S + AC +P G + FV N+
Sbjct: 385 MVIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPLGKQIHGHVIRTDVSDEFVQNS 444
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
LIDMY + G++ + +F + H+++V+WN M+
Sbjct: 445 LIDMYSKSGSVDSASTVFNQIKHRSVVTWNSML 477
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/343 (25%), Positives = 161/343 (46%), Gaps = 51/343 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ YN + E+ + F MI G+ P+ V +C + R GK V+ +
Sbjct: 270 SWTAMISSYNRGEFSEKALRSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKSVHGFA 329
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + + N +E + +L++ YA+C L
Sbjct: 330 VRRELDPN-----------------------YESLSL------ALVELYAECGKLSDCET 360
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+ +++V+WN++++ YA G + L +M+ ++P+ +L+ ++AC
Sbjct: 361 VLRVVSDRNIVAWNSLISLYAHRGMVIQALGLF--RQMVTQRIKPDAFTLASSISACENA 418
Query: 212 KGVKLGKAIHGYVLRHH----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
V LGK IHG+V+R I + + G V + +VFNQ+ R VV WNS++
Sbjct: 419 GLVPLGKQIHGHVIRTDVSDEFVQNSLIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLC 478
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS--------- 312
F ++G V+A+ L + + ++ N VT ++V+ AC + +L +G
Sbjct: 479 GFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLIISGLKD 538
Query: 313 -FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
F ALIDMY +CG + + +F M +++VSW+ MI+ YG
Sbjct: 539 LFTDTALIDMYAKCGDLNAAETVFRAMSSRSIVSWSSMINAYG 581
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 91/398 (22%), Positives = 178/398 (44%), Gaps = 84/398 (21%)
Query: 6 QVHAHLIVCG------------VELCAFLGSQ-----LLEVFCNWTSMMGMYNVL----- 43
Q+HAHL+V G +E AF+GS + E F S M Y VL
Sbjct: 19 QLHAHLLVTGRLRRDPLPVTKLIESYAFMGSPDSSRLVFEAFPYPDSFM--YGVLIKCNV 76
Query: 44 --GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY-RVGKDVYDYMISIKFEGNA 100
+ ++L++ ++ + + FV P V +AC+ +++ VG V+
Sbjct: 77 WCHLLDAAIDLYHRLVSETTQISKFVFPSVLRACAGSREHLSVGGKVH------------ 124
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
GR+ I G+ D D ++ SL+ Y + L + F + +D
Sbjct: 125 -------------GRI-IKGGV----DDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRD 166
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEME-MIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
LV+W+ +++ G EV L + M+ ++P+ +++ V+ CA++ +++ ++
Sbjct: 167 LVAWSTLVSSCLENG---EVVKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARS 223
Query: 220 IHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+HG + R L + CG ++ S +F +++ ++ V W ++IS++ R
Sbjct: 224 VHGQITRKMFDLDETLCNSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEF 283
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN------------ 316
AL ++I + ++PN VT+ SVL +C + + +G F
Sbjct: 284 SEKALRSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELDPNYESLSL 343
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
AL+++Y CG + + ++ +N+V+WN +IS+Y
Sbjct: 344 ALVELYAECGKLSDCETVLRVVSDRNIVAWNSLISLYA 381
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 148/328 (45%), Gaps = 54/328 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ +Y G + + LF M+ + ++PD F AC +GK ++ ++I
Sbjct: 373 WNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPLGKQIHGHVI 432
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
R +++ D V NSLID Y+K + +
Sbjct: 433 ----------------------RTDVS---------DEFVQNSLIDMYSKSGSVDSASTV 461
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F++IK + +V+WN+ML G++ G E +L D M + ++ N ++ V+ AC+ +
Sbjct: 462 FNQIKHRSVVTWNSMLCGFSQNGNSVEAISLFDYM--YHSYLEMNEVTFLAVIQACSSIG 519
Query: 213 GVKLGKAIHGYVL----------RHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISA 262
++ GK +H ++ I + CG + + +VF +S+R +V W+S+I+A
Sbjct: 520 SLEKGKWVHHKLIISGLKDLFTDTALIDMYAKCGDLNAAETVFRAMSSRSIVSWSSMINA 579
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTG 311
+ G++ A+ ++ + KPN V ++VL AC ++ + G+
Sbjct: 580 YGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSACGHSGSVEEGKYYFNLMKSFGVSPN 639
Query: 312 SFVWNALIDMYGRCGAIQKSRKIFVLMP 339
S + ID+ R G ++++ + MP
Sbjct: 640 SEHFACFIDLLSRSGDLKEAYRTIKEMP 667
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 94/237 (39%), Gaps = 55/237 (23%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYN 41
LG Q+H H+I V F+ + L++++ W SM+ ++
Sbjct: 423 LGKQIHGHVIRTDVS-DEFVQNSLIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLCGFS 481
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G E ++LF M + + V +ACS + GK V+ +
Sbjct: 482 QNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKL---------- 531
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
I SGL +D + +LID YAKC L + F + + +
Sbjct: 532 ----------------IISGL-----KDLFTDTALIDMYAKCGDLNAAETVFRAMSSRSI 570
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
VSW++M+ Y + G + + +M+++ +PN + VL+AC V+ GK
Sbjct: 571 VSWSSMINAYGMHGRIGSAISTFN--QMVESGTKPNEVVFMNVLSACGHSGSVEEGK 625
>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
Length = 696
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/349 (29%), Positives = 181/349 (51%), Gaps = 38/349 (10%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W + + E ++ + M G RPD+F P V KA S L+D + G+ ++
Sbjct: 59 SWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAA 118
Query: 92 ISIKFEGNA-CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ + ++ V L++++ KCG + D+ F NN+L+ YAK + S
Sbjct: 119 VKFGYGSSSVTVANTLVNMYGKCGGIG---------DKTF-TNNALMAMYAKLGRVDDSK 168
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F +D+VSWN M++ ++ E M+ ++ + ++++ VL AC+
Sbjct: 169 ALFESFVDRDMVSWNTMISSFSQSDRFSEALAFF--RLMVLEGVELDGVTIASVLPACSH 226
Query: 211 VKGVKLGKAIHGYVLRHH-----IHLSTACGFVICSCS-------VFNQLSTRDVVVWNS 258
++ + +GK IH YVLR++ + +A + C+C VF+ + R + +WN+
Sbjct: 227 LERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNA 286
Query: 259 IISAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVLPACL-KLAALPQG--------- 307
+IS + R+G AL L ++I VA + PNT T+ SV+PAC+ LAA+ +G
Sbjct: 287 MISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIR 346
Query: 308 --LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L + V +AL+DMY +CG + SR++F MP+KN+++WNV+I G
Sbjct: 347 NMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACG 395
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/338 (24%), Positives = 153/338 (45%), Gaps = 61/338 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ ++ + E + F LM+ +GV D V ACS L+ VGK+++ Y+
Sbjct: 181 SWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYV 240
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ ++ ++ V ++L+D Y CR ++
Sbjct: 241 LRNN-----------------------------DLIENSFVGSALVDMYCNCRQVESGRR 271
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ-TDMQPNTISLSGVLAACAQ 210
F I + + WNAM++GYA G E+ L +EMI+ + PNT +++ V+ AC
Sbjct: 272 VFDHILGRRIELWNAMISGYARNGLDEKALILF--IEMIKVAGLLPNTTTMASVMPACVH 329
Query: 211 -VKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ + GK IH Y +R+ + + CG + S VFN++ ++V+ WN
Sbjct: 330 SLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNV 389
Query: 259 IISAFVRSGQVVDALDLLRDVIV-----ANVKPNTVTIVSVLPACLKLAALPQGLG---- 309
+I A G+ +AL+L ++++ KPN VT ++V AC + +GL
Sbjct: 390 LIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYR 449
Query: 310 --------TGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
S + ++D+ GR G ++++ ++ MP
Sbjct: 450 MKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMP 487
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 95/237 (40%), Gaps = 57/237 (24%)
Query: 1 MELGIQVHAHLIVCGVEL-CAFLGSQLLEVFCN---------------------WTSMMG 38
+++G ++HA+++ + +F+GS L++++CN W +M+
Sbjct: 230 LDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMIS 289
Query: 39 MYNVLGYYEEIVNLFYLMID-KGVRPDHFVCPKVYKAC-SELKDYRVGKDVYDYMISIKF 96
Y G E+ + LF MI G+ P+ V AC L GK+++ Y I
Sbjct: 290 GYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNML 349
Query: 97 EGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKI 156
+ V L+D++ KCG + ++ +F EM
Sbjct: 350 ASDITVGSALVDMYAKCGCLNLSRRVFNEM------------------------------ 379
Query: 157 KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ---TDMQPNTISLSGVLAACAQ 210
K++++WN ++ + G EE L M + +PN ++ V AAC+
Sbjct: 380 PNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSH 436
>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 1135
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 116/414 (28%), Positives = 193/414 (46%), Gaps = 90/414 (21%)
Query: 1 MELGIQVHAHLIVCG----------VELCAFLG-----SQLLEVF-----CNWTSMMGMY 40
+ LG QVHA+ + G V + A LG L VF +W +++
Sbjct: 450 VRLGKQVHAYTLRNGDLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSL 509
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+ +EE + YLMI GVRPD V ACS+L+ R+G++++ Y +
Sbjct: 510 SQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYAL-------- 561
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
+ G ++ ++ V +L+D Y C+ K F + ++
Sbjct: 562 -----------RNG----------DLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRT 600
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+ WNA+LAGYA F ++ L EM + +++ PN + + VL AC + K + I
Sbjct: 601 VAVWNALLAGYARNEFDDQALRLFVEM-ISESEFCPNATTFASVLPACVRCKVFSDKEGI 659
Query: 221 HGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
HGY+++ + + + G V S ++F +++ RD+V WN++I+ + G+
Sbjct: 660 HGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRY 719
Query: 270 VDALDLLR-----------DVIV-------ANVKPNTVTIVSVLPACLKLAALPQG---- 307
DAL+LL D V KPN+VT+++VLP C LAAL +G
Sbjct: 720 DDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIH 779
Query: 308 -------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L V +AL+DMY +CG + + ++F MP +N+++WNV+I YG
Sbjct: 780 AYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYG 833
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 161/345 (46%), Gaps = 58/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK-DYRVGKDVYDY 90
+W SM+ +E ++LF LM+ + V P F V ACS ++ R+GK V+ Y
Sbjct: 400 SWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAY 459
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ D NN+L+ YA+ + +
Sbjct: 460 TL-------------------------------RNGDLRTYTNNALVTMYARLGRVNDAK 488
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F KDLVSWN +++ + EE L+ MI ++P+ ++L+ VL AC+Q
Sbjct: 489 ALFGVFDGKDLVSWNTVISSLSQNDRFEEA--LMYVYLMIVDGVRPDGVTLASVLPACSQ 546
Query: 211 VKGVKLGKAIHGYVLRH-----HIHLSTACGFVICSCS-------VFNQLSTRDVVVWNS 258
++ +++G+ IH Y LR+ + + TA + C+C VF+ + R V VWN+
Sbjct: 547 LERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNA 606
Query: 259 IISAFVRSGQVVDALDLLRDVIV-ANVKPNTVTIVSVLPACLKLAALP-----------Q 306
+++ + R+ AL L ++I + PN T SVLPAC++ +
Sbjct: 607 LLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKR 666
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
G G +V NAL+DMY R G ++ S+ IF M +++VSWN MI+
Sbjct: 667 GFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMIT 711
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 146/314 (46%), Gaps = 53/314 (16%)
Query: 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLF 123
D+F P V KA + + D +GK ++ ++ K G +S
Sbjct: 329 DNFAFPAVLKAAAAVHDLCLGKQIHAHVF-------------------KFGHAPPSS--- 366
Query: 124 EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNL 183
V NSL++ Y KC L + F I +D VSWN+M+A L F E +L
Sbjct: 367 ------VAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIA--TLCRFEEWELSL 418
Query: 184 LDEMEMIQTDMQPNTISLSGVLAACAQVKG-VKLGKAIHGYVLRHH----------IHLS 232
M+ ++ P + +L V AC+ V+G V+LGK +H Y LR+ + +
Sbjct: 419 HLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDLRTYTNNALVTMY 478
Query: 233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
G V + ++F +D+V WN++IS+ ++ + +AL + +IV V+P+ VT+
Sbjct: 479 ARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLA 538
Query: 293 SVLPACLKLAALPQG------------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340
SVLPAC +L L G L SFV AL+DMY C +K R +F +
Sbjct: 539 SVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVR 598
Query: 341 KNLVSWNVMISVYG 354
+ + WN +++ Y
Sbjct: 599 RTVAVWNALLAGYA 612
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 88/407 (21%), Positives = 174/407 (42%), Gaps = 98/407 (24%)
Query: 1 MELGIQVHAHLIVCGVEL-CAFLGSQLLEVFCN---------------------WTSMMG 38
+ +G ++H + + G + +F+G+ L++++CN W +++
Sbjct: 550 LRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLA 609
Query: 39 MYNVLGYYEEIVNLFYLMIDKGVR-PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
Y + ++ + LF MI + P+ V AC K + + ++ Y++ F
Sbjct: 610 GYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGF- 668
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
+D V N+L+D Y++ +++S F ++
Sbjct: 669 -----------------------------GKDKYVQNALMDMYSRMGRVEISKTIFGRMN 699
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD----------------MQPNTISL 201
++D+VSWN M+ G + G ++ NLL EM+ Q + +PN+++L
Sbjct: 700 KRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTL 759
Query: 202 SGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACG------FVICSC-----SVFNQLST 250
VL CA + + GK IH Y ++ + + A G + C C VF+Q+
Sbjct: 760 MTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPI 819
Query: 251 RDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN------VKPNTVTIVSVLPACLKLAAL 304
R+V+ WN +I A+ G+ +AL+L R + ++PN VT +++ AC +
Sbjct: 820 RNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMV 879
Query: 305 PQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFVLMP 339
+GL + + L+D+ GR G ++++ ++ MP
Sbjct: 880 DEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMP 926
>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
[Vitis vinifera]
gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
Length = 742
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/392 (25%), Positives = 183/392 (46%), Gaps = 75/392 (19%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNVLG 44
Q+HA L+V G+ FL ++ + N W +++ Y+
Sbjct: 89 QIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHN 148
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
++ + + ++ M GV PD F P V KACS + VGK V+ + + FE
Sbjct: 149 FFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFE------- 201
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
D V N L+ YAKC ++ + F + +++VSW
Sbjct: 202 -----------------------SDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSW 238
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
+M++GY G E + +M Q +++P+ I+L VL A V+ ++ GK+IHG V
Sbjct: 239 TSMISGYGQNGLPMEALRIFGQMR--QRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCV 296
Query: 225 LRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
++ + CG V+ + S F+Q+ +V++WN++IS + ++G +A+
Sbjct: 297 VKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAV 356
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNALIDMY 322
L +++I N++ +++T+ S + AC ++ +L G FV ALIDM+
Sbjct: 357 GLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMF 416
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+CG++ +R++F K++V W+ MI YG
Sbjct: 417 AKCGSVDLAREVFDRTLDKDVVVWSAMIVGYG 448
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 101/394 (25%), Positives = 177/394 (44%), Gaps = 76/394 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E+G +VH + G E F+ + L+ ++ +WTSM+
Sbjct: 185 LEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISG 244
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G E + +F M + V+PD V +A ++++D GK ++
Sbjct: 245 YGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIH----------- 293
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
CV + GL E + D L+ SL YAKC + V+ F +++
Sbjct: 294 GCV---------------VKMGL--EFEPDLLI--SLTAMYAKCGQVMVARSFFDQMEIP 334
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+++ WNAM++GYA G+ E L EMI +++ ++I++ + ACAQV + L K
Sbjct: 335 NVMMWNAMISGYAKNGYTNEAVGLF--QEMISKNIRTDSITVRSAILACAQVGSLDLAKW 392
Query: 220 IHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+ Y+ R+ + ++TA CG V + VF++ +DVVVW+++I + G+
Sbjct: 393 MGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGR 452
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNA 317
DA+DL + A V PN VT V +L AC + + G+ +
Sbjct: 453 GQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSMKYYGIEARHQHYAC 512
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMI 350
++D+ GR G + ++ MP + VS W ++
Sbjct: 513 VVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALL 546
>gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71490-like [Vitis vinifera]
Length = 748
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 105/400 (26%), Positives = 193/400 (48%), Gaps = 51/400 (12%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G Q+H H+I G E L +L+ + W ++ Y
Sbjct: 119 GRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSNILHPFPWNLLISSYVR 178
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G+ ++ ++ + M+ KG+RPD+F P V KAC E D GK+V++ + + + + + V
Sbjct: 179 NGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWSLIV 238
Query: 103 KRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD- 160
L+ ++ KCG++ I LF+++ ++D + NS+I YA + F + +D
Sbjct: 239 HNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDI 298
Query: 161 ---LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
++ WN + GY G + LL +M + + ++++L L AC+ + KLG
Sbjct: 299 ELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHL--DSVALIIGLGACSHIGDAKLG 356
Query: 218 KAIHGYVLRH-----------HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
K IH + +R I + + C + + +F + + ++ WNSIIS
Sbjct: 357 KEIHSFAIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHM 416
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFV 314
+ +A LLR++++ ++PN VTI SVLP C ++A L G +
Sbjct: 417 DRSEEASFLLREMLLFGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLL 476
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
WNAL+DMY R G + ++R++F ++ ++ +++ MI+ YG
Sbjct: 477 WNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYG 516
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/343 (25%), Positives = 158/343 (46%), Gaps = 57/343 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W ++ G Y G Y+ + L M G D ACS + D ++GK+++ + I
Sbjct: 305 WNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAI 364
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+C F E+D V N+LI Y++C+ LK ++
Sbjct: 365 ------RSC---------------------FGEVDT---VKNALITMYSRCKDLKHAYLL 394
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ K L++WN++++G EE + LL EM + ++PN ++++ VL CA+V
Sbjct: 395 FQLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLLF--GIEPNYVTIASVLPLCARVA 452
Query: 213 GVKLGKAIHGYVLRH-----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
++ GK H Y+ R H+ L A G V+ + VF+ L RD + + S+I
Sbjct: 453 NLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMI 512
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GL 308
+ + G+ AL L ++ +KP+ +T+++VL AC + Q GL
Sbjct: 513 AGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGL 572
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMI 350
+ + D++GR G + K+++I MP+K + W +I
Sbjct: 573 TPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLI 615
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 89/180 (49%), Gaps = 30/180 (16%)
Query: 201 LSGVLAACAQVKGVKLGKAIHGYVL-----RHHIHLSTACGFVICSCSVFNQLSTRDVVV 255
+S +L++C VK + G+ +HG+++ +H I + F S FN L V+
Sbjct: 103 ISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFY----SAFNLLVDAHVIT 158
Query: 256 ----------WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC---LKLA 302
WN +IS++VR+G AL + ++ ++P+ T SVL AC L L
Sbjct: 159 ENSNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLG 218
Query: 303 ---ALPQGLGTGSFVW-----NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + + W NALI MYG+CG + +R +F +P ++ VSWN MISVY
Sbjct: 219 FGKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYA 278
>gi|334184678|ref|NP_180987.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546770|sp|O64705.2|PP184_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g34400
gi|330253874|gb|AEC08968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 621
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/389 (25%), Positives = 185/389 (47%), Gaps = 72/389 (18%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVF-CNWTSMM-----------------GMYNVLGYYE 47
Q+ A +++ VE FL + +E+ N++S + G+ N +E
Sbjct: 55 QIQAQMLLHSVEKPNFLIPKAVELGDFNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHE 114
Query: 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL 107
++L+ M G++PD F V+ AC++L++ VG+ V+ + + E
Sbjct: 115 AALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLE---------- 164
Query: 108 DLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAM 167
+D +N+SLI YAKC + + F +I ++D VSWN+M
Sbjct: 165 --------------------RDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSM 204
Query: 168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH 227
++GY+ G+ ++ +L +ME + +P+ +L +L AC+ + ++ G+ + +
Sbjct: 205 ISGYSEAGYAKDAMDLFRKME--EEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITK 262
Query: 228 HIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL 276
I LST CG + + VFNQ+ +D V W ++I+ + ++G+ +A L
Sbjct: 263 KIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLF 322
Query: 277 RDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRC 325
++ V P+ T+ +VL AC + AL G L +V L+DMYG+C
Sbjct: 323 FEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKC 382
Query: 326 GAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G ++++ ++F MP KN +WN MI+ Y
Sbjct: 383 GRVEEALRVFEAMPVKNEATWNAMITAYA 411
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 152/331 (45%), Gaps = 52/331 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y+ GY ++ ++LF M ++G PD + ACS L D R G+
Sbjct: 200 SWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGR------ 253
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
E A K+ L F+ + LI Y KC L +
Sbjct: 254 ---LLEEMAITKKIGLSTFL---------------------GSKLISMYGKCGDLDSARR 289
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+++ +KD V+W AM+ Y+ G E L EME +T + P+ +LS VL+AC V
Sbjct: 290 VFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEME--KTGVSPDAGTLSTVLSACGSV 347
Query: 212 KGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
++LGK I + L+H+I+++T CG V + VF + ++ WN++I
Sbjct: 348 GALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMI 407
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALID 320
+A+ G +AL LL D + +V P+ +T + VL AC+ + QG ++ +
Sbjct: 408 TAYAHQGHAKEAL-LLFDRM--SVPPSDITFIGVLSACVHAGLVHQGCR----YFHEMSS 460
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLV--SWNVM 349
M+G I+ I L+ ++ +W M
Sbjct: 461 MFGLVPKIEHYTNIIDLLSRAGMLDEAWEFM 491
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 121/315 (38%), Gaps = 88/315 (27%)
Query: 12 IVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNVLGYYEEIV 50
I + L FLGS+L+ ++ WT+M+ +Y+ G E
Sbjct: 260 ITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAF 319
Query: 51 NLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLF 110
LF+ M GV PD V AC + +GK + + + + N V L+D++
Sbjct: 320 KLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMY 379
Query: 111 IKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAG 170
KCGR+E +FE M K+ +WNAM+
Sbjct: 380 GKCGRVEEALRVFEAM------------------------------PVKNEATWNAMITA 409
Query: 171 YALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH 230
YA G +E L D M + P+ I+ GVL+AC +H
Sbjct: 410 YAHQGHAKEALLLFDRM-----SVPPSDITFIGVLSAC-----------VH--------- 444
Query: 231 LSTACGFVICSCSVFNQLSTRDVVV-----WNSIISAFVRSGQVVDALDLLRDVIVANVK 285
G V C F+++S+ +V + +II R+G + +A + + K
Sbjct: 445 ----AGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERF---PGK 497
Query: 286 PNTVTIVSVLPACLK 300
P+ + + ++L AC K
Sbjct: 498 PDEIMLAAILGACHK 512
>gi|3128231|gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana]
gi|20197159|gb|AAM14947.1| hypothetical protein [Arabidopsis thaliana]
Length = 617
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/389 (25%), Positives = 185/389 (47%), Gaps = 72/389 (18%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVF-CNWTSMM-----------------GMYNVLGYYE 47
Q+ A +++ VE FL + +E+ N++S + G+ N +E
Sbjct: 51 QIQAQMLLHSVEKPNFLIPKAVELGDFNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHE 110
Query: 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL 107
++L+ M G++PD F V+ AC++L++ VG+ V+ + + E
Sbjct: 111 AALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLE---------- 160
Query: 108 DLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAM 167
+D +N+SLI YAKC + + F +I ++D VSWN+M
Sbjct: 161 --------------------RDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSM 200
Query: 168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH 227
++GY+ G+ ++ +L +ME + +P+ +L +L AC+ + ++ G+ + +
Sbjct: 201 ISGYSEAGYAKDAMDLFRKME--EEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITK 258
Query: 228 HIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL 276
I LST CG + + VFNQ+ +D V W ++I+ + ++G+ +A L
Sbjct: 259 KIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLF 318
Query: 277 RDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRC 325
++ V P+ T+ +VL AC + AL G L +V L+DMYG+C
Sbjct: 319 FEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKC 378
Query: 326 GAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G ++++ ++F MP KN +WN MI+ Y
Sbjct: 379 GRVEEALRVFEAMPVKNEATWNAMITAYA 407
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 152/331 (45%), Gaps = 52/331 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y+ GY ++ ++LF M ++G PD + ACS L D R G+
Sbjct: 196 SWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGR------ 249
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
E A K+ L F+ + LI Y KC L +
Sbjct: 250 ---LLEEMAITKKIGLSTFL---------------------GSKLISMYGKCGDLDSARR 285
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+++ +KD V+W AM+ Y+ G E L EME +T + P+ +LS VL+AC V
Sbjct: 286 VFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEME--KTGVSPDAGTLSTVLSACGSV 343
Query: 212 KGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
++LGK I + L+H+I+++T CG V + VF + ++ WN++I
Sbjct: 344 GALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMI 403
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALID 320
+A+ G +AL LL D + +V P+ +T + VL AC+ + QG ++ +
Sbjct: 404 TAYAHQGHAKEAL-LLFDRM--SVPPSDITFIGVLSACVHAGLVHQGCR----YFHEMSS 456
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLV--SWNVM 349
M+G I+ I L+ ++ +W M
Sbjct: 457 MFGLVPKIEHYTNIIDLLSRAGMLDEAWEFM 487
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 121/315 (38%), Gaps = 88/315 (27%)
Query: 12 IVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNVLGYYEEIV 50
I + L FLGS+L+ ++ WT+M+ +Y+ G E
Sbjct: 256 ITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAF 315
Query: 51 NLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLF 110
LF+ M GV PD V AC + +GK + + + + N V L+D++
Sbjct: 316 KLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMY 375
Query: 111 IKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAG 170
KCGR+E +FE M K+ +WNAM+
Sbjct: 376 GKCGRVEEALRVFEAM------------------------------PVKNEATWNAMITA 405
Query: 171 YALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH 230
YA G +E L D M + P+ I+ GVL+AC +H
Sbjct: 406 YAHQGHAKEALLLFDRM-----SVPPSDITFIGVLSAC-----------VH--------- 440
Query: 231 LSTACGFVICSCSVFNQLSTRDVVV-----WNSIISAFVRSGQVVDALDLLRDVIVANVK 285
G V C F+++S+ +V + +II R+G + +A + + K
Sbjct: 441 ----AGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERF---PGK 493
Query: 286 PNTVTIVSVLPACLK 300
P+ + + ++L AC K
Sbjct: 494 PDEIMLAAILGACHK 508
>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Glycine max]
Length = 705
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 108/395 (27%), Positives = 185/395 (46%), Gaps = 75/395 (18%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVF--CN-------------------WTSMMGMYN 41
LG +H L+ G+ + +GS L+ ++ CN W +++ Y
Sbjct: 124 LGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYY 183
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G ++E + F LM G P+ +C+ L D G ++++ +I+ F
Sbjct: 184 QSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGF----- 238
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
LLD FI +++L+D Y KC +L+++ F ++ +K +
Sbjct: 239 ----LLDSFI---------------------SSALVDMYGKCGHLEMAIEVFEQMPKKTV 273
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
V+WN+M++GY L G L M ++P +LS ++ C++ + GK +H
Sbjct: 274 VAWNSMISGYGLKGDSISCIQLFKRM--YNEGVKPTLTTLSSLIMVCSRSARLLEGKFVH 331
Query: 222 GYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
GY +R+ I L CG V + ++F + VV WN +IS +V G++
Sbjct: 332 GYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLF 391
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALI 319
+AL L ++ + V+P+ +T SVL AC +LAAL +G L V AL+
Sbjct: 392 EALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLIIEKKLDNNEVVMGALL 451
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
DMY +CGA+ ++ +F +P ++LVSW MI+ YG
Sbjct: 452 DMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYG 486
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 100/381 (26%), Positives = 169/381 (44%), Gaps = 76/381 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G+++H LI G L +F+ S L++++ W SM+ Y +
Sbjct: 226 GMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGL 285
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G + LF M ++GV+P + CS GK V+ Y I
Sbjct: 286 KGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTI---------- 335
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
R I S +F +N+SL+D Y KC ++++ F I + +V
Sbjct: 336 ------------RNRIQSDVF--------INSSLMDLYFKCGKVELAENIFKLIPKSKVV 375
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SWN M++GY G E L EM ++ ++P+ I+ + VL AC+Q+ ++ G+ IH
Sbjct: 376 SWNVMISGYVAEGKLFEALGLFSEMR--KSYVEPDAITFTSVLTACSQLAALEKGEEIHN 433
Query: 223 YVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
++ + + CG V + SVF L RD+V W S+I+A+ GQ
Sbjct: 434 LIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGQAYV 493
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------LGTGSFV--WNALI 319
AL+L +++ +N+KP+ VT +++L AC + +G G V ++ LI
Sbjct: 494 ALELFAEMLQSNMKPDRVTFLAILSACGHAGLVDEGCYYFNQMVNVYGIIPRVEHYSCLI 553
Query: 320 DMYGRCGAIQKSRKIFVLMPH 340
D+ GR G + ++ +I P
Sbjct: 554 DLLGRAGRLHEAYEILQQNPE 574
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 153/344 (44%), Gaps = 55/344 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M Y Y E + LF ++ ++PD + P V KAC L Y +GK ++ +
Sbjct: 73 WNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKMIHTCL 132
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + V L+ ++ KC E LF EM
Sbjct: 133 VKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEM------------------------- 167
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+KD+ WN +++ Y G +E M + +PN+++++ +++CA++
Sbjct: 168 -----PEKDVACWNTVISCYYQSGNFKEALEYFGLMR--RFGFEPNSVTITTAISSCARL 220
Query: 212 KGVKLGKAIH------GYVLRHHIH-----LSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ G IH G++L I + CG + + VF Q+ + VV WNS+I
Sbjct: 221 LDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMI 280
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
S + G + + L + + VKP T+ S++ C + A L +G +
Sbjct: 281 SGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQ 340
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ F+ ++L+D+Y +CG ++ + IF L+P +VSWNVMIS Y
Sbjct: 341 SDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGY 384
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 146/304 (48%), Gaps = 52/304 (17%)
Query: 73 KACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLV 132
+AC K + GK ++ ++++ + + + + L++L++ C + +F+ M+
Sbjct: 11 RACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNMENP--- 67
Query: 133 NNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQT 192
C+ S WN ++AGY E L +++ +
Sbjct: 68 ------------------CEIS--------LWNGLMAGYTKNYMYVEALELFEKL-LHYP 100
Query: 193 DMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACG------FVICSCS--- 243
++P++ + VL AC + LGK IH +++ + + G + C+
Sbjct: 101 YLKPDSYTYPSVLKACGGLYKYVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKA 160
Query: 244 --VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
+FN++ +DV WN++IS + +SG +AL+ + +PN+VTI + + +C +L
Sbjct: 161 IWLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARL 220
Query: 302 AALPQGL-------GTG----SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
L +G+ +G SF+ +AL+DMYG+CG ++ + ++F MP K +V+WN MI
Sbjct: 221 LDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMI 280
Query: 351 SVYG 354
S YG
Sbjct: 281 SGYG 284
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 24/181 (13%)
Query: 197 NTISLSGVLAACAQVKGVKLGKAIHGYVL-----------RHHIHLSTACGFVICSCSVF 245
+T L +L AC K +K GK IH V+ ++ I+L +C + VF
Sbjct: 2 DTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVF 61
Query: 246 NQLSTR-DVVVWNSIISAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVLPAC----- 298
+ + ++ +WN +++ + ++ V+AL+L ++ +KP++ T SVL AC
Sbjct: 62 DNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYK 121
Query: 299 ------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+ + GL V ++L+ MY +C A +K+ +F MP K++ WN +IS
Sbjct: 122 YVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISC 181
Query: 353 Y 353
Y
Sbjct: 182 Y 182
>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 736
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 118/396 (29%), Positives = 189/396 (47%), Gaps = 77/396 (19%)
Query: 4 GIQVHAHLIVCGV---------ELCAF-----LGSQLLEVFCN--------WTSMMGMYN 41
G Q+HAH+I + +L AF L SQ +F W M+ Y
Sbjct: 78 GQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYA 137
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G + + L+ M+ G R D+F P V KAC +L +G+ V+ ++
Sbjct: 138 SNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVV-------- 189
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
CG ++ D V NSL+ YAK + + F ++ ++DL
Sbjct: 190 -----------CG-----------LESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDL 227
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
SWN M++GYA + T L M + + + +L G+L+ACA +K VK GK IH
Sbjct: 228 TSWNTMISGYAKNA--DSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIH 285
Query: 222 GYVLRHHI-----HLSTACGFVICSCS-------VFNQLSTRDVVVWNSIISAFVRSGQV 269
GY +R+ I + + + C+C+ +F ++ +D V WNS+I + R+G
Sbjct: 286 GYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDA 345
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------VWNAL 318
++L L R + + P+ VT ++VL AC ++AAL G+ S+ V AL
Sbjct: 346 FESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTAL 405
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+DMY +CG++ SR++F MP K+LVSW+ M++ YG
Sbjct: 406 VDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYG 441
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/385 (22%), Positives = 162/385 (42%), Gaps = 75/385 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E+G +VH+ ++VCG+E ++G+ LL ++ +W +M+
Sbjct: 177 VEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISG 236
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y +F LM G+ D + AC++LK + GK ++ Y + GN
Sbjct: 237 YAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSI-GN 295
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ NSLI+ Y C + + F +++ K
Sbjct: 296 ----------------------------YNKFFTNSLIEMYCNCNCMVDARRLFERVRWK 327
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D VSWN+M+ GYA G E L M + + P+ ++ VL AC Q+ ++ G +
Sbjct: 328 DTVSWNSMILGYARNGDAFESLRLFRRMALDGSG--PDQVTFIAVLGACDQIAALRYGMS 385
Query: 220 IHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH Y+++ +T CG + CS VF+++ + +V W+++++ + G+
Sbjct: 386 IHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGR 445
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWN 316
+A+ +L + +V P+ S+L AC + +G + ++
Sbjct: 446 GREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYS 505
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHK 341
++D+ GR G + ++ I M K
Sbjct: 506 CMVDLLGRAGHLDEAYVIIRTMEIK 530
>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera]
gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
Length = 618
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/337 (28%), Positives = 163/337 (48%), Gaps = 54/337 (16%)
Query: 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
G+ + + +Y M D G+RP++F P V+ AC+ L
Sbjct: 99 GLTTTWQKFNLTIEFYYQMKDFGIRPNNFTYPFVFIACANL------------------- 139
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
L + G+ + L + D V +SLI Y++C L + F +I
Sbjct: 140 -----------LVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEIS 188
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+KDLVSWN+M++GY+ G+ + L EM +P+ ++L +L AC + + LG
Sbjct: 189 EKDLVSWNSMISGYSRMGYAGDAVGLFGEMR--DAGFEPDEMTLVSILGACGDLGDLGLG 246
Query: 218 KAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
I G+V+ + + L++ CG + + VF+++ +DVV WN++I+ + ++
Sbjct: 247 SWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQN 306
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVW 315
G +A+ L + + V P+ +T+V VL AC + AL +GL +V
Sbjct: 307 GVSDEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVS 366
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
ALIDMY +CG++ + ++F MP KN VSWN MIS
Sbjct: 367 TALIDMYAKCGSLDDALRVFEDMPQKNEVSWNAMISA 403
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 154/335 (45%), Gaps = 57/335 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y+ +GY + V LF M D G PD + AC +L D +G + ++
Sbjct: 194 SWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFV 253
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ EMD + V ++LI Y KC L +
Sbjct: 254 VE------------------------------NEMDLNSFVGSALIGMYGKCGDLSSARR 283
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +KD+V+WNAM+ GYA G +E L M ++ + P+ I+L GVL+ACA +
Sbjct: 284 VFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMR--ESGVNPDKITLVGVLSACASI 341
Query: 212 KGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ GK + Y L++ I++STA CG + + VF + ++ V WN++I
Sbjct: 342 GALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQKNEVSWNAMI 401
Query: 261 SAFVRSGQVVDALDLLRDVIVAN--VKPNTVTIVSVLPACLKLAALPQG-----LGTGSF 313
SA G+ ++L L + + V+PN ++ + VL AC+ + +G L + SF
Sbjct: 402 SALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAGLVDEGRQLFDLMSSSF 461
Query: 314 VW-------NALIDMYGRCGAIQKSRKIFVLMPHK 341
+ ++D+ R G + ++ MP K
Sbjct: 462 GLVPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEK 496
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 31/228 (13%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM--EMIQTDMQPNTISLSGVLAACAQ 210
FS+I + ++N M+ G + NL E +M ++PN + V ACA
Sbjct: 82 FSQIPYPNEYAFNIMIRGLTT---TWQKFNLTIEFYYQMKDFGIRPNNFTYPFVFIACAN 138
Query: 211 VKGVKLGKAIHGYVL----------RHH-IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ + G+ H VL RH I + + CG + C+ VF+++S +D+V WNS+
Sbjct: 139 LLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSWNSM 198
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGT--------- 310
IS + R G DA+ L ++ A +P+ +T+VS+L AC L L GLG+
Sbjct: 199 ISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDL--GLGSWIEGFVVEN 256
Query: 311 ----GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
SFV +ALI MYG+CG + +R++F M K++V+WN MI+ Y
Sbjct: 257 EMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYA 304
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 108/268 (40%), Gaps = 52/268 (19%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y G +E + LF M + GV PD V AC+ + GK + Y
Sbjct: 296 WNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTY-- 353
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+R L D V+ +LID YAKC L +
Sbjct: 354 --------ASERGL--------------------QNDIYVSTALIDMYAKCGSLDDALRV 385
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + QK+ VSWNAM++ A G +E +L M ++PN IS GVL+AC
Sbjct: 386 FEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAG 445
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
V G+ + +S++ G V + + ++ R+G V +A
Sbjct: 446 LVDEGRQLFDL-------MSSSFGLV------------PKIEHHSCMVDLLARAGHVHEA 486
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLK 300
D + + KP+ V + ++L AC K
Sbjct: 487 WDFIEKM---PEKPDEVVLGALLGACQK 511
>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
Length = 736
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/353 (26%), Positives = 167/353 (47%), Gaps = 58/353 (16%)
Query: 28 EVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDK---GVRPDHFVCPKVYKACSELKDYRVG 84
+ W +++ Y+ G + + ++ M+ K G++PD AC+ + D G
Sbjct: 123 KTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQG 182
Query: 85 KDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCR 144
+++ ++ + D +V N+LI+ Y+KC
Sbjct: 183 REIEARTVASGYA------------------------------SDSIVQNALINMYSKCG 212
Query: 145 YLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGV 204
L+ + F ++K +D+++WN M++GYA G + L M D +PN ++ G+
Sbjct: 213 SLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMG--PNDPKPNVVTFIGL 270
Query: 205 LAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVI------CSCS------VFNQLSTRD 252
L AC ++ ++ G+AIH V G V+ CS S VF ++ TRD
Sbjct: 271 LTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRD 330
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS 312
V+ WN +I A+V+ GQ DALD+ + + + NV PN +T+ +VL AC L A QG +
Sbjct: 331 VITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHA 390
Query: 313 FVW-----------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ N+L++MY RCG++ + +F + K+LVSW+ +I+ Y
Sbjct: 391 LIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYA 443
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/346 (25%), Positives = 168/346 (48%), Gaps = 53/346 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT ++ + G+Y E + + M+ +G+RPD + CS KD + G+ ++ +
Sbjct: 25 SWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGVCSSSKDLKQGQLLHAMI 84
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + ++ D ++ +LI YA+CR L+++
Sbjct: 85 LETRL-----------------------------LEFDIILGTALITMYARCRDLELARK 115
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNTISLSGVLAACAQ 210
F ++ +K LV+WNA++AGY+ G + +M + M+P+ I+ S L AC
Sbjct: 116 TFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTV 175
Query: 211 VKGVKLGKAIH------GY-----VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
V + G+ I GY V I++ + CG + + VF++L RDV+ WN++
Sbjct: 176 VGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTM 235
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG---------- 309
IS + + G AL+L + + + KPN VT + +L AC L L QG
Sbjct: 236 ISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGY 295
Query: 310 -TGSFVWNALIDMYGRC-GAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ + N L++MY +C +++++R++F M +++++WN++I Y
Sbjct: 296 ESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAY 341
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 116/242 (47%), Gaps = 28/242 (11%)
Query: 139 FYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT 198
Y KC + + F I+ + VSW ++A +A G E M+ ++P+
Sbjct: 1 MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYY--RRMVLEGLRPDG 58
Query: 199 ISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----IHLSTACGFVICSC-------SVFN 246
+ C+ K +K G+ +H +L I L TA + C F+
Sbjct: 59 AMFVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFD 118
Query: 247 QLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN---VKPNTVTIVSVLPACLKLAA 303
++ + +V WN++I+ + R+G AL + +D++ + +KP+ +T S L AC +
Sbjct: 119 EMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGD 178
Query: 304 LPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+ Q G + S V NALI+MY +CG+++ +RK+F + ++++++WN MIS
Sbjct: 179 ISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISG 238
Query: 353 YG 354
Y
Sbjct: 239 YA 240
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/343 (21%), Positives = 151/343 (44%), Gaps = 55/343 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y G + + LF M +P+ + AC+ L+D G+ ++ +
Sbjct: 232 WNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVR 291
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+E + + LL+++ KC S EE Q
Sbjct: 292 EDGYESDLVIGNVLLNMYTKC------SSSLEEARQ-----------------------V 322
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F +++ +D+++WN ++ Y G ++ ++ +M++ ++ PN I+LS VL+ACA +
Sbjct: 323 FERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQL--ENVAPNEITLSNVLSACAVLG 380
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ GKA+H + +++ CG + + VF + + +V W+++I+
Sbjct: 381 AKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIA 440
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTG-SFVWNA--- 317
A+ + G L+ +++ + + VT+VS L AC L +G+ T S V +
Sbjct: 441 AYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLA 500
Query: 318 --------LIDMYGRCGAIQKSRKIFVLMPH-KNLVSWNVMIS 351
++D+ R G ++ + + MP + V+W ++S
Sbjct: 501 PDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLS 543
>gi|326512500|dbj|BAJ99605.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 621
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 165/345 (47%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ Y G ++ + +F MI +G P+ F + KAC+E K R GK ++ +
Sbjct: 254 SWTTMITAYVQHGRGDKALQMFPAMISEGFHPNEFTVCSILKACAEEKALRCGKQLHGAL 313
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F+ D V ++L+ YA+ R + +
Sbjct: 314 VKKLFK------------------------------NDIHVGSALVTMYARNREVSDAQA 343
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +++ ++W ++++GYA G E L +M+ + + N +++ G+L+AC +
Sbjct: 344 VFDVMPRRNTITWTSLISGYAQSGHAERAIMLFRQMKTRRVSV--NNLTIVGLLSACGSL 401
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVI----CSCS-------VFNQLSTRDVVVWNSII 260
+ + LGK +H V+++ I + G + C C + ++ RD V W ++I
Sbjct: 402 RSLCLGKELHAQVIKNSIQENLQIGSTLVWCYCKCGEYTYAARILEEMPDRDAVAWTAMI 461
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG----------- 309
S + G +AL L D++ V PNT T S L AC KL AL G
Sbjct: 462 SGYNSVGHSAEALKSLDDMLWDGVTPNTYTYSSALKACAKLEALQDGRRIHGVVNKTPAF 521
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ FV ++LIDMY RCG + ++R++F +P NLV+W V+I+ +
Sbjct: 522 SNVFVGSSLIDMYMRCGKVDEARRVFSALPEHNLVTWKVIITGFA 566
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/351 (27%), Positives = 159/351 (45%), Gaps = 69/351 (19%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH--FVCPKVYKACSELKDYRVGKDVYD 89
+WT+MM Y G + E+V LF MI G R + FVC + K+C E D ++G+ V+
Sbjct: 154 SWTAMMNGYQKSGNHGEVVRLFLDMIASGERGNSLSFVC--LLKSCGEQCDGKLGQQVH- 210
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
CV +K G + ++++++ FYA+C + +
Sbjct: 211 ----------CCV--------VKGGWSNV------------IMDSAVAHFYAQCGDVDGA 240
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F K+ +D++SW M+ Y G ++ + M I PN ++ +L ACA
Sbjct: 241 SMMFDKMTSRDVISWTTMITAYVQHGRGDKALQMFPAM--ISEGFHPNEFTVCSILKACA 298
Query: 210 QVKGVKLGKAIHGYVLR----HHIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNS 258
+ K ++ GK +HG +++ + IH+ +A V + +VF+ + R+ + W S
Sbjct: 299 EEKALRCGKQLHGALVKKLFKNDIHVGSALVTMYARNREVSDAQAVFDVMPRRNTITWTS 358
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-------------- 304
+IS + +SG A+ L R + V N +TIV +L AC L +L
Sbjct: 359 LISGYAQSGHAERAIMLFRQMKTRRVSVNNLTIVGLLSACGSLRSLCLGKELHAQVIKNS 418
Query: 305 -PQGLGTGS-FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ L GS VW Y +CG + +I MP ++ V+W MIS Y
Sbjct: 419 IQENLQIGSTLVW-----CYCKCGEYTYAARILEEMPDRDAVAWTAMISGY 464
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 123/246 (50%), Gaps = 24/246 (9%)
Query: 130 FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
FL NN LI YA+ + + F ++ ++ +VSW AM+ GY G EV L ++M
Sbjct: 122 FLANN-LITSYARFHEIPDARKVFDEMPERTVVSWTAMMNGYQKSGNHGEVVRLF--LDM 178
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----------IHLSTACGFVI 239
I + + N++S +L +C + KLG+ +H V++ H CG V
Sbjct: 179 IASGERGNSLSFVCLLKSCGEQCDGKLGQQVHCCVVKGGWSNVIMDSAVAHFYAQCGDVD 238
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ +F+++++RDV+ W ++I+A+V+ G+ AL + +I PN T+ S+L AC
Sbjct: 239 GASMMFDKMTSRDVISWTTMITAYVQHGRGDKALQMFPAMISEGFHPNEFTVCSILKACA 298
Query: 300 KLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
+ AL G V +AL+ MY R + ++ +F +MP +N ++W
Sbjct: 299 EEKALRCGKQLHGALVKKLFKNDIHVGSALVTMYARNREVSDAQAVFDVMPRRNTITWTS 358
Query: 349 MISVYG 354
+IS Y
Sbjct: 359 LISGYA 364
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 116/281 (41%), Gaps = 43/281 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WTS++ Y G+ E + LF M + V ++ + AC L+ +GK+++ +
Sbjct: 355 TWTSLISGYAQSGHAERAIMLFRQMKTRRVSVNNLTIVGLLSACGSLRSLCLGKELHAQV 414
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + N + L+ + KCG + + EEM
Sbjct: 415 IKNSIQENLQIGSTLVWCYCKCGEYTYAARILEEM------------------------- 449
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+D V+W AM++GY G E LD+M + + PNT + S L ACA++
Sbjct: 450 -----PDRDAVAWTAMISGYNSVGHSAEALKSLDDM--LWDGVTPNTYTYSSALKACAKL 502
Query: 212 KGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ ++ G+ IHG +V I + CG V + VF+ L ++V W II
Sbjct: 503 EALQDGRRIHGVVNKTPAFSNVFVGSSLIDMYMRCGKVDEARRVFSALPEHNLVTWKVII 562
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
+ F ++G +A + + + + VL +C L
Sbjct: 563 TGFAQNGLCEEAFKYMYLMQQQGYDADDFMLSKVLTSCGDL 603
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 96/231 (41%), Gaps = 53/231 (22%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYN 41
LG ++HA +I ++ +GS L+ +C WT+M+ YN
Sbjct: 406 LGKELHAQVIKNSIQENLQIGSTLVWCYCKCGEYTYAARILEEMPDRDAVAWTAMISGYN 465
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+G+ E + M+ GV P+ + KAC++L+ + G+ ++ + N
Sbjct: 466 SVGHSAEALKSLDDMLWDGVTPNTYTYSSALKACAKLEALQDGRRIHGVVNKTPAFSNVF 525
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
V L+D++++CG+++ + R + FS + + +L
Sbjct: 526 VGSSLIDMYMRCGKVD------------------------EARRV------FSALPEHNL 555
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
V+W ++ G+A G EE + M+ Q + LS VL +C ++
Sbjct: 556 VTWKVIITGFAQNGLCEEAFKYMYLMQ--QQGYDADDFMLSKVLTSCGDLQ 604
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 284 VKPNTVTIVSVLPACLKLA--------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIF 335
+ P+ T+ S L +C +A A+ G G F+ N LI Y R I +RK+F
Sbjct: 85 ISPDAETLASWLRSCGAVADVRGVHGVAVRSPDGPGIFLANNLITSYARFHEIPDARKVF 144
Query: 336 VLMPHKNLVSWNVMISVY 353
MP + +VSW M++ Y
Sbjct: 145 DEMPERTVVSWTAMMNGY 162
>gi|168066429|ref|XP_001785140.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663262|gb|EDQ50036.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 922
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 106/396 (26%), Positives = 176/396 (44%), Gaps = 76/396 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q+H+H+ G E + + L+ ++C +WT+M+
Sbjct: 168 LEFGEQIHSHITKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISG 227
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G +E LF +I G +P+ + AC+ D G ++ Y IK G
Sbjct: 228 YVQHGDSKEAFVLFQKLIRSGTQPNKVSFASILGACTNPNDLEQGLKLHAY---IKQAG- 283
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
++Q+ LV N+LI YA+C L + F ++
Sbjct: 284 --------------------------LEQEVLVGNALISMYARCGSLANARQVFDNLRSP 317
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+ VSWNAM+AGY GF EE L +M+ Q QP+ + + +LA CA + GK
Sbjct: 318 NRVSWNAMIAGYG-EGFMEEAFRLFRDMQ--QKGFQPDRFTYASLLAICADRADLNRGKE 374
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H ++R I + CG + + VFNQ+ ++ V WN+ I+ R G
Sbjct: 375 LHSQIVRTAWEADVTVATALISMYAKCGSLEEARKVFNQMPEKNAVSWNAFIACCCRHGS 434
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNA 317
+A + + + +V P+ VT +++L +C +G + + + V NA
Sbjct: 435 EKEAFQVFKQMRRDDVIPDHVTFITLLNSCTSPEDFERGRYIHGKIDQWGMLSNNLVANA 494
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
LI MYGRCG + +R++F + ++L SWN MI+ Y
Sbjct: 495 LISMYGRCGKLADAREVFYRIRRRDLGSWNAMIAAY 530
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 162/322 (50%), Gaps = 54/322 (16%)
Query: 55 LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG 114
L+ +GV+ + + + C + K GK V+D+M S +FE
Sbjct: 41 LLGKRGVQANLNFYARRLQECVQAKSLAEGKKVHDHMRSAQFE----------------- 83
Query: 115 RMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALG 174
D +NN LI Y+KC ++ ++ F ++ KD+VSWNAM++GYAL
Sbjct: 84 -------------PDIYLNNMLISMYSKCGSIEDANNVFQSMEDKDVVSWNAMISGYALH 130
Query: 175 GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HHIH 230
G +E +L +M+ + ++PN S +L+AC ++ G+ IH ++ + ++
Sbjct: 131 GRGQEAVDLFYQMQ--REGLKPNQNSFISILSACQTPIVLEFGEQIHSHITKAGYESDVN 188
Query: 231 LSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283
+STA CG + + VFN++ R+VV W ++IS +V+ G +A L + +I +
Sbjct: 189 VSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSKEAFVLFQKLIRSG 248
Query: 284 VKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSR 332
+PN V+ S+L AC L QGL ++ V NALI MY RCG++ +R
Sbjct: 249 TQPNKVSFASILGACTNPNDLEQGLKLHAYIKQAGLEQEVLVGNALISMYARCGSLANAR 308
Query: 333 KIFVLMPHKNLVSWNVMISVYG 354
++F + N VSWN MI+ YG
Sbjct: 309 QVFDNLRSPNRVSWNAMIAGYG 330
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 97/401 (24%), Positives = 169/401 (42%), Gaps = 96/401 (23%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDK---- 59
G +VH H+ E +L + L+ MY+ G E+ N+F M DK
Sbjct: 70 GKKVHDHMRSAQFEPDIYLNNMLI----------SMYSKCGSIEDANNVFQSMEDKDVVS 119
Query: 60 ---------------------------GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
G++P+ + AC G+ ++ ++
Sbjct: 120 WNAMISGYALHGRGQEAVDLFYQMQREGLKPNQNSFISILSACQTPIVLEFGEQIHSHIT 179
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+E + V L++++ KCG +E+ +F EM
Sbjct: 180 KAGYESDVNVSTALINMYCKCGSLELARKVFNEM-------------------------- 213
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
+++++VSW AM++GY G +E L ++I++ QPN +S + +L AC
Sbjct: 214 ----RERNVVSWTAMISGYVQHGDSKEAFVLF--QKLIRSGTQPNKVSFASILGACTNPN 267
Query: 213 GVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ G +H Y+ L + + A CG + + VF+ L + + V WN++I+
Sbjct: 268 DLEQGLKLHAYIKQAGLEQEVLVGNALISMYARCGSLANARQVFDNLRSPNRVSWNAMIA 327
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----WN- 316
+ G + +A L RD+ +P+ T S+L C A L +G S + W
Sbjct: 328 GYG-EGFMEEAFRLFRDMQQKGFQPDRFTYASLLAICADRADLNRGKELHSQIVRTAWEA 386
Query: 317 ------ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
ALI MY +CG+++++RK+F MP KN VSWN I+
Sbjct: 387 DVTVATALISMYAKCGSLEEARKVFNQMPEKNAVSWNAFIA 427
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 98/396 (24%), Positives = 169/396 (42%), Gaps = 76/396 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLL-------------EVFCN--------WTSMMGM 39
+E G+++HA++ G+E +G+ L+ +VF N W +M+
Sbjct: 269 LEQGLKLHAYIKQAGLEQEVLVGNALISMYARCGSLANARQVFDNLRSPNRVSWNAMIAG 328
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G+ EE LF M KG +PD F + C++ D GK+++ ++ +E
Sbjct: 329 YGE-GFMEEAFRLFRDMQQKGFQPDRFTYASLLAICADRADLNRGKELHSQIVRTAWEA- 386
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D V +LI YAKC L+ + F+++ +K
Sbjct: 387 -----------------------------DVTVATALISMYAKCGSLEEARKVFNQMPEK 417
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+ VSWNA +A G +E + +M + D+ P+ ++ +L +C + + G+
Sbjct: 418 NAVSWNAFIACCCRHGSEKEAFQVFKQMR--RDDVIPDHVTFITLLNSCTSPEDFERGRY 475
Query: 220 IHGY-----------VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IHG V I + CG + + VF ++ RD+ WN++I+A+V+ G
Sbjct: 476 IHGKIDQWGMLSNNLVANALISMYGRCGKLADAREVFYRIRRRDLGSWNAMIAAYVQHGA 535
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA----------- 317
A DL K + T ++VL A L L G V A
Sbjct: 536 NGSAFDLFIKYKSEGGKGDKYTFINVLRAIANLEDLDAGRKIHGLVEKAGLEKDIRILTT 595
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
LI MY +CG+++ + +F + K++V WN M++ Y
Sbjct: 596 LIKMYSKCGSLRDAYSVFKNVQEKDVVCWNAMLAAY 631
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 122/275 (44%), Gaps = 43/275 (15%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G +E +F M V PDH + +C+ +D+ G+ ++
Sbjct: 433 GSEKEAFQVFKQMRRDDVIPDHVTFITLLNSCTSPEDFERGRYIH--------------- 477
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
G+++ M + LV N+LI Y +C L + F +I+++DL S
Sbjct: 478 ----------GKIDQWG-----MLSNNLVANALISMYGRCGKLADAREVFYRIRRRDLGS 522
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
WNAM+A Y G +L ++ + + + VL A A ++ + G+ IHG
Sbjct: 523 WNAMIAAYVQHGANGSAFDLF--IKYKSEGGKGDKYTFINVLRAIANLEDLDAGRKIHGL 580
Query: 224 V-----------LRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
V L I + + CG + + SVF + +DVV WN++++A+ S DA
Sbjct: 581 VEKAGLEKDIRILTTLIKMYSKCGSLRDAYSVFKNVQEKDVVCWNAMLAAYNHSDHGQDA 640
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
L L + + + V P++ T SVL AC +L A+ G
Sbjct: 641 LKLFQQMRLEGVNPDSATYTSVLNACARLGAIEHG 675
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 85/192 (44%), Gaps = 36/192 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G +LF +G + D + V +A + L+D G+ ++
Sbjct: 522 SWNAMIAAYVQHGANGSAFDLFIKYKSEGGKGDKYTFINVLRAIANLEDLDAGRKIH--- 578
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEE--MDQDFLVNNSLIDFYAKCRYLKVS 149
GL E+ +++D + +LI Y+KC L+ +
Sbjct: 579 -----------------------------GLVEKAGLEKDIRILTTLIKMYSKCGSLRDA 609
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
+ F +++KD+V WNAMLA Y ++ L +M + + P++ + + VL ACA
Sbjct: 610 YSVFKNVQEKDVVCWNAMLAAYNHSDHGQDALKLFQQMRL--EGVNPDSATYTSVLNACA 667
Query: 210 QVKGVKLGKAIH 221
++ ++ GK H
Sbjct: 668 RLGAIEHGKKFH 679
>gi|255545590|ref|XP_002513855.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546941|gb|EEF48438.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 498
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 112/396 (28%), Positives = 184/396 (46%), Gaps = 76/396 (19%)
Query: 2 ELGIQVHA--------HLIV----------CG---VELCAFLGSQLLEVFCNWTSMMGMY 40
ELG Q+HA +LIV CG CAF + +V C WTS++
Sbjct: 84 ELGRQIHACVVKGNWRNLIVDSAIVSFYAQCGDLESAFCAFFQVREKDVVC-WTSVISAC 142
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+ G EE +F M+ +G P+ F + KAC E K + G+ ++
Sbjct: 143 SQQGRGEEAFRMFSQMLGEGFLPNEFTVCAILKACGEKKALKFGRQLH------------ 190
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
C I G++++ D + SL+D YAKC + S F +++++
Sbjct: 191 ------------CA---IVKGMYKD---DVFIGTSLVDMYAKCGEMIDSKEVFDGMRKRN 232
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
V+W +++AGYA G EE L M+ + + N +++ VL AC + G+ +
Sbjct: 233 TVTWTSIIAGYARKGLGEEAIRLFRVMK--RRKIISNNLTVVSVLRACGSISASLTGREV 290
Query: 221 HGYVLRH----HIHLSTACGFVICSCSVFN-------QLSTRDVVVWNSIISAFVRSGQV 269
H +++ +++L + + C C FN Q+S R+VV W ++IS ++ G
Sbjct: 291 HAQIIKSGIQSNVYLGSTLVWFYCKCGEFNIASKVLQQMSFRNVVSWTAMISGYIGLGYE 350
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------VWNAL 318
+AL+ L++++ V+PN T S L AC L ++ QG SF V +AL
Sbjct: 351 FEALEFLKEMMDEGVEPNEFTYSSALKACANLESVLQGKLIHSFANKTPASSNVYVGSAL 410
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
I MY +CG + + ++F MP +NL+SW MI Y
Sbjct: 411 IYMYSKCGYLSDAIQVFDSMPERNLISWKTMILSYA 446
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/346 (25%), Positives = 166/346 (47%), Gaps = 59/346 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH--FVCPKVYKACSELKDYRVGKDVYD 89
+WT+M+ Y G +E + LF +I+ GV ++ FVC + CS+ D+ +G+ ++
Sbjct: 34 SWTAMINGYVSFGLDDEALRLFSELIENGVTANNRTFVC--ILNVCSKRLDFELGRQIH- 90
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
ACV + ++ +V+++++ FYA+C L+ +
Sbjct: 91 ----------ACVVKGNW--------------------RNLIVDSAIVSFYAQCGDLESA 120
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
C F ++++KD+V W ++++ + G EE + +M+ PN ++ +L AC
Sbjct: 121 FCAFFQVREKDVVCWTSVISACSQQGRGEEAFRMFS--QMLGEGFLPNEFTVCAILKACG 178
Query: 210 QVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ K +K G+ +H +++ + + CG +I S VF+ + R+ V W S
Sbjct: 179 EKKALKFGRQLHCAIVKGMYKDDVFIGTSLVDMYAKCGEMIDSKEVFDGMRKRNTVTWTS 238
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQG 307
II+ + R G +A+ L R + + N +T+VSVL AC ++A + G
Sbjct: 239 IIAGYARKGLGEEAIRLFRVMKRRKIISNNLTVVSVLRACGSISASLTGREVHAQIIKSG 298
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ + ++ + L+ Y +CG + K+ M +N+VSW MIS Y
Sbjct: 299 IQSNVYLGSTLVWFYCKCGEFNIASKVLQQMSFRNVVSWTAMISGY 344
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 117/244 (47%), Gaps = 23/244 (9%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V+N+LI YA+ L + F ++ ++ +VSW AM+ GY G +E L E+I+
Sbjct: 3 VDNNLISVYARLGELIEARKVFDQMHERCVVSWTAMINGYVSFGLDDEALRLFS--ELIE 60
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----------IHLSTACGFVICS 241
+ N + +L C++ +LG+ IH V++ + + CG + +
Sbjct: 61 NGVTANNRTFVCILNVCSKRLDFELGRQIHACVVKGNWRNLIVDSAIVSFYAQCGDLESA 120
Query: 242 CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
F Q+ +DVV W S+ISA + G+ +A + ++ PN T+ ++L AC +
Sbjct: 121 FCAFFQVREKDVVCWTSVISACSQQGRGEEAFRMFSQMLGEGFLPNEFTVCAILKACGEK 180
Query: 302 AALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
AL G F+ +L+DMY +CG + S+++F M +N V+W +I
Sbjct: 181 KALKFGRQLHCAIVKGMYKDDVFIGTSLVDMYAKCGEMIDSKEVFDGMRKRNTVTWTSII 240
Query: 351 SVYG 354
+ Y
Sbjct: 241 AGYA 244
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 123/278 (44%), Gaps = 43/278 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WTS++ Y G EE + LF +M + + ++ V +AC + G++V+ +
Sbjct: 235 TWTSIIAGYARKGLGEEAIRLFRVMKRRKIISNNLTVVSVLRACGSISASLTGREVHAQI 294
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + N + L+ + KCG I S + +
Sbjct: 295 IKSGIQSNVYLGSTLVWFYCKCGEFNIASKVLQ--------------------------- 327
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
++ +++VSW AM++GY G+ E L EM + ++PN + S L ACA +
Sbjct: 328 ---QMSFRNVVSWTAMISGYIGLGYEFEALEFLKEM--MDEGVEPNEFTYSSALKACANL 382
Query: 212 KGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ V GK IH YV I++ + CG++ + VF+ + R+++ W ++I
Sbjct: 383 ESVLQGKLIHSFANKTPASSNVYVGSALIYMYSKCGYLSDAIQVFDSMPERNLISWKTMI 442
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
++ R+G +AL L+ + ++ + SV+ +C
Sbjct: 443 LSYARNGLCREALKLMYRMQAEGIEVDDYIYASVMGSC 480
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 90/229 (39%), Gaps = 53/229 (23%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G +VHA +I G++ +LGS L+ +C +WT+M+ Y
Sbjct: 287 GREVHAQIIKSGIQSNVYLGSTLVWFYCKCGEFNIASKVLQQMSFRNVVSWTAMISGYIG 346
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
LGY E + M+D+GV P+ F KAC+ L+ GK ++ + N V
Sbjct: 347 LGYEFEALEFLKEMMDEGVEPNEFTYSSALKACANLESVLQGKLIHSFANKTPASSNVYV 406
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L+ ++ KCG YL + F + +++L+
Sbjct: 407 GSALIYMYSKCG------------------------------YLSDAIQVFDSMPERNLI 436
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
SW M+ YA G E L+ M+ ++ + + V+ +C V
Sbjct: 437 SWKTMILSYARNGLCREALKLMYRMQ--AEGIEVDDYIYASVMGSCGDV 483
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 10/140 (7%)
Query: 223 YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
YV + I + G +I + VF+Q+ R VV W ++I+ +V G +AL L ++I
Sbjct: 2 YVDNNLISVYARLGELIEARKVFDQMHERCVVSWTAMINGYVSFGLDDEALRLFSELIEN 61
Query: 283 NVKPNTVTIVSVLPACLKL----------AALPQGLGTGSFVWNALIDMYGRCGAIQKSR 332
V N T V +L C K A + +G V +A++ Y +CG ++ +
Sbjct: 62 GVTANNRTFVCILNVCSKRLDFELGRQIHACVVKGNWRNLIVDSAIVSFYAQCGDLESAF 121
Query: 333 KIFVLMPHKNLVSWNVMISV 352
F + K++V W +IS
Sbjct: 122 CAFFQVREKDVVCWTSVISA 141
>gi|125545042|gb|EAY91181.1| hypothetical protein OsI_12790 [Oryza sativa Indica Group]
Length = 885
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 169/345 (48%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ Y G+ + + +F M+ +G RP+ F V KAC+E K R GK ++ +
Sbjct: 517 SWTTMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVLKACAEEKAVRFGKQLHCAV 576
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ ++ D + ++L+ YA+C + +
Sbjct: 577 LKKMYK------------------------------NDIHIGSALVTMYARCGEVFDAQA 606
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +++ ++W +M++GYA G E+ L +M+M + + N +++ G+L+AC +
Sbjct: 607 VFDMMPRRNTITWTSMISGYAQSGHGEKAIFLFRKMKMRRVFV--NNLTIVGLLSACGSL 664
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVI----CSCS-------VFNQLSTRDVVVWNSII 260
+ + LGK +H ++++ + + G + C C + + RD + W ++I
Sbjct: 665 QSLYLGKELHAQIIKNSMEDNLQIGSTLVWFYCKCGEYTYAARILEAMPDRDAISWTALI 724
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG----------- 309
S + G V+AL L D++ VKPNT T S L AC KL AL G
Sbjct: 725 SGYNNLGHNVEALKSLDDMLWDGVKPNTYTYSSALKACAKLEALQYGRKIHGFVNKTQDF 784
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ FV ++LIDMY RCG + ++R++F MP NLV+W V+I+ +
Sbjct: 785 SNVFVGSSLIDMYMRCGKVDEARRVFDAMPEHNLVTWKVIITGFA 829
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 98/346 (28%), Positives = 166/346 (47%), Gaps = 59/346 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH--FVCPKVYKACSELKDYRVGKDVYD 89
+WT+MM Y LG+Y E+V LF+ M+ GV+ + FVC + K+C E D ++G+ V+
Sbjct: 417 SWTAMMNAYLKLGHYGEVVRLFFDMVGSGVQGNSLTFVC--LLKSCGERCDAKLGQQVH- 473
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
C+ +K G + +V++++ FYA+C + +
Sbjct: 474 ----------CCI--------VKGGWSNV------------IVDSAIAHFYAQCGDVASA 503
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F K+ +D++SW M+ Y G + + EM+ +PN ++ VL ACA
Sbjct: 504 SAIFDKMASRDVISWTTMITAYVQHGHGGQALRMFS--EMVSEGFRPNEFTVCSVLKACA 561
Query: 210 QVKGVKLGKAIHGYVL----RHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNS 258
+ K V+ GK +H VL ++ IH+ +A CG V + +VF+ + R+ + W S
Sbjct: 562 EEKAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTITWTS 621
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-TGSFVWNA 317
+IS + +SG A+ L R + + V N +TIV +L AC L +L G + N+
Sbjct: 622 MISGYAQSGHGEKAIFLFRKMKMRRVFVNNLTIVGLLSACGSLQSLYLGKELHAQIIKNS 681
Query: 318 LID----------MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ D Y +CG + +I MP ++ +SW +IS Y
Sbjct: 682 MEDNLQIGSTLVWFYCKCGEYTYAARILEAMPDRDAISWTALISGY 727
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 128/247 (51%), Gaps = 27/247 (10%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCK--FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
V N+LI YA R+ +VS + F ++ ++ +VSW AM+ Y G EV L +
Sbjct: 385 FVANNLISAYA--RFDEVSDARKVFDEMPERSVVSWTAMMNAYLKLGHYGEVVRLF--FD 440
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----------IHLSTACGFV 238
M+ + +Q N+++ +L +C + KLG+ +H +++ H CG V
Sbjct: 441 MVGSGVQGNSLTFVCLLKSCGERCDAKLGQQVHCCIVKGGWSNVIVDSAIAHFYAQCGDV 500
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ ++F+++++RDV+ W ++I+A+V+ G AL + +++ +PN T+ SVL AC
Sbjct: 501 ASASAIFDKMASRDVISWTTMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVLKAC 560
Query: 299 -----------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
L A L + + +AL+ MY RCG + ++ +F +MP +N ++W
Sbjct: 561 AEEKAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTITWT 620
Query: 348 VMISVYG 354
MIS Y
Sbjct: 621 SMISGYA 627
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 121/281 (43%), Gaps = 43/281 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WTSM+ Y G+ E+ + LF M + V ++ + AC L+ +GK+++ +
Sbjct: 618 TWTSMISGYAQSGHGEKAIFLFRKMKMRRVFVNNLTIVGLLSACGSLQSLYLGKELHAQI 677
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I E N + L+ + KCG + + E M
Sbjct: 678 IKNSMEDNLQIGSTLVWFYCKCGEYTYAARILEAM------------------------- 712
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+D +SW A+++GY G E LD+M + ++PNT + S L ACA++
Sbjct: 713 -----PDRDAISWTALISGYNNLGHNVEALKSLDDM--LWDGVKPNTYTYSSALKACAKL 765
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ ++ G+ IHG+V + I + CG V + VF+ + ++V W II
Sbjct: 766 EALQYGRKIHGFVNKTQDFSNVFVGSSLIDMYMRCGKVDEARRVFDAMPEHNLVTWKVII 825
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
+ F ++G +AL + + + + + +VL +C L
Sbjct: 826 TGFAQNGLCEEALKYMYLMQQEGHEVDDFVLSTVLTSCGDL 866
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 104/245 (42%), Gaps = 55/245 (22%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYN 41
LG ++HA +I +E +GS L+ +C +WT+++ YN
Sbjct: 669 LGKELHAQIIKNSMEDNLQIGSTLVWFYCKCGEYTYAARILEAMPDRDAISWTALISGYN 728
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
LG+ E + M+ GV+P+ + KAC++L+ + G+ ++ ++ + N
Sbjct: 729 NLGHNVEALKSLDDMLWDGVKPNTYTYSSALKACAKLEALQYGRKIHGFVNKTQDFSNVF 788
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
V L+D++++CG+++ +F+ M + +L
Sbjct: 789 VGSSLIDMYMRCGKVDEARRVFDAM------------------------------PEHNL 818
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA--QVKGVKLGKA 219
V+W ++ G+A G EE + M+ Q + + LS VL +C Q K + +
Sbjct: 819 VTWKVIITGFAQNGLCEEALKYMYLMQ--QEGHEVDDFVLSTVLTSCGDLQWKSISFSDS 876
Query: 220 IHGYV 224
+ G V
Sbjct: 877 VAGSV 881
Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G+FV N LI Y R + +RK+F MP +++VSW M++ Y
Sbjct: 383 GTFVANNLISAYARFDEVSDARKVFDEMPERSVVSWTAMMNAY 425
>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
Length = 706
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 105/398 (26%), Positives = 188/398 (47%), Gaps = 77/398 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+E G Q+H ++ G++ +G+ L+ V+ W M+G
Sbjct: 127 VEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGG 186
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G+ ++ LF MI G++PD + +E + K+++ Y++
Sbjct: 187 YVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVR------ 240
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+LD+++ N++LID Y KCR V CK + K
Sbjct: 241 ---HGVILDVYL---------------------NSALIDLYFKCRD-AVMACKMFNLSTK 275
Query: 160 -DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
D+V + AM++GY L G ++ + ++Q M PN ++ S +L ACA + +KLG+
Sbjct: 276 FDIVIYTAMISGYVLNGMNKDALEIF--RWLLQKKMIPNALTFSSILPACAGLAAIKLGR 333
Query: 219 AIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
+HGY++++ + ++ CG + + +F ++S +D + WNSII++F + G
Sbjct: 334 ELHGYIIKNELEEKCPVGSAIMNMYAKCGRLDLAHLIFGRISIKDAICWNSIITSFSQDG 393
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWN 316
+ +A+ L R + + VK + VT+ + L AC + AL G + F +
Sbjct: 394 KPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMIKGAFESDLFDMS 453
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
ALI+MY +CG + +R +F LM KN V+WN +I+ YG
Sbjct: 454 ALINMYAKCGKLNIARLVFNLMQEKNEVAWNSIIAAYG 491
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 100/391 (25%), Positives = 179/391 (45%), Gaps = 95/391 (24%)
Query: 56 MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE--------------GNAC 101
M+ GV PD + P V K C+ L + R+GK + D ++ + F+ N C
Sbjct: 1 MLGCGVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGC 60
Query: 102 VKRP-----------------LLDLFIKCGRMEITSGLFEEMDQ---------------- 128
++ +++ +++CG + LF++M
Sbjct: 61 IEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSI 120
Query: 129 ----------------------DF--LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
DF LV N+L+ Y+K R L + F + Q DLV W
Sbjct: 121 SCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVW 180
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
N M+ GY GF ++ + L +EM I ++P++I+ + L + A+ +K K IHGY+
Sbjct: 181 NRMIGGYVQNGFMDDASMLFNEM--ISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYI 238
Query: 225 LRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
+RH ++L++A C + +C +FN + D+V++ ++IS +V +G DAL
Sbjct: 239 VRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDAL 298
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------VWNALIDMY 322
++ R ++ + PN +T S+LPAC LAA+ G + V +A+++MY
Sbjct: 299 EIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMY 358
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+CG + + IF + K+ + WN +I+ +
Sbjct: 359 AKCGRLDLAHLIFGRISIKDAICWNSIITSF 389
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/390 (20%), Positives = 180/390 (46%), Gaps = 77/390 (19%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNVLG 44
++H +++ GV L +L S L++++ +T+M+ Y + G
Sbjct: 233 EIHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNG 292
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
++ + +F ++ K + P+ + AC+ L ++G++++ Y+I
Sbjct: 293 MNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIK----------- 341
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
E+++ V +++++ YAKC L ++H F +I KD + W
Sbjct: 342 -------------------NELEEKCPVGSAIMNMYAKCGRLDLAHLIFGRISIKDAICW 382
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
N+++ ++ G EE L +M M ++ + +++S L+ACA + + GK IHG++
Sbjct: 383 NSIITSFSQDGKPEEAIYLFRQMGM--EGVKYDCVTVSAALSACANIPALHYGKEIHGFM 440
Query: 225 LRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
++ I++ CG + + VFN + ++ V WNSII+A+ G + D+L
Sbjct: 441 IKGAFESDLFDMSALINMYAKCGKLNIARLVFNLMQEKNEVAWNSIIAAYGYHGYLADSL 500
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL----------GTGSFV--WNALIDM 321
L +++ ++P+ +T +++L +C + G+ G + + + + D+
Sbjct: 501 ALFHNMLEEGIQPDHITFLTILSSCGHAGQVEDGVRYFRCMTEEYGIPAQMEHYACMADL 560
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVS-WNVMI 350
+GR G + ++ ++ MP S W ++
Sbjct: 561 FGRAGHLDEAFEVITSMPFPPAASVWGTLL 590
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 100/238 (42%), Gaps = 53/238 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
++LG ++H ++I +E +GS ++ ++ W S++
Sbjct: 329 IKLGRELHGYIIKNELEEKCPVGSAIMNMYAKCGRLDLAHLIFGRISIKDAICWNSIITS 388
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
++ G EE + LF M +GV+ D AC+ + GK+++ +MI FE +
Sbjct: 389 FSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMIKGAFESD 448
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
L++++ KCG++ I +F M ++K
Sbjct: 449 LFDMSALINMYAKCGKLNIARLVFNLM------------------------------QEK 478
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+ V+WN+++A Y G+ + L M++ +QP+ I+ +L++C V+ G
Sbjct: 479 NEVAWNSIIAAYGYHGYLADSLALFH--NMLEEGIQPDHITFLTILSSCGHAGQVEDG 534
>gi|147794059|emb|CAN66615.1| hypothetical protein VITISV_022030 [Vitis vinifera]
Length = 818
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 119/462 (25%), Positives = 206/462 (44%), Gaps = 116/462 (25%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLL-------------------EVFCN--WTSMMGMYNV 42
G Q HA ++V G+ LG++LL ++C+ W M+ + +
Sbjct: 65 GRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTM 124
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE----- 97
+G ++ + ++ M+ G PD + P V KAC L +G+ V+D + + FE
Sbjct: 125 MGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFV 184
Query: 98 ---------GNACV--------KRP---------LLDLFIKCGRMEITSGLFEEM----- 126
N C+ + P +L+ ++K G + +G+F EM
Sbjct: 185 GSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTET 244
Query: 127 -----------------------------------DQDFLVNNSLIDFYAKCRYLKVSHC 151
+ D V N+L+ YAKC +L +
Sbjct: 245 NPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARR 304
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + + DLV+WN M++GY GF +E + L EM I M+P++I+ S L ++
Sbjct: 305 LFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEM--ISAGMKPDSITFSSFLPLLSEG 362
Query: 212 KGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSII 260
++ GK IH Y++R+ + L C V + +F+Q + D+VV ++I
Sbjct: 363 ATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMAHKIFDQRTPVDIVVCTAMI 422
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLG 309
S +V +G +AL++ R ++ ++ N+VT+ SVLPAC LAAL G G
Sbjct: 423 SGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHG 482
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+V +A++DMY +CG + + + F+ + K+ V WN MI+
Sbjct: 483 GSCYVGSAIMDMYAKCGKLDLAHQTFIGISXKDAVCWNSMIT 524
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 108/397 (27%), Positives = 185/397 (46%), Gaps = 75/397 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ G Q+H ++ G+E+ + + + LL ++ W M+
Sbjct: 264 INFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISG 323
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G+ +E LF+ MI G++PD SE R GK+++ Y+I
Sbjct: 324 YVQNGFMDEASCLFHEMISAGMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVS-- 381
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
LD+F+K ++LID Y KCR ++++H F +
Sbjct: 382 -------LDVFLK---------------------SALIDIYFKCRDVEMAHKIFDQRTPV 413
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+V AM++GY L G + ++Q M+ N+++L+ VL ACA + + LGK
Sbjct: 414 DIVVCTAMISGYVLNGMNNNALEIF--RWLLQERMRANSVTLASVLPACAGLAALTLGKE 471
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+HG++L++ + + CG + + F +S +D V WNS+I++ ++G+
Sbjct: 472 LHGHILKNGHGGSCYVGSAIMDMYAKCGKLDLAHQTFIGISXKDAVCWNSMITSCSQNGK 531
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNA 317
+A+DL R + +A K + V+I + L AC L AL G + F +A
Sbjct: 532 PEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESA 591
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
LIDMY +CG + + ++F +M KN VSWN +I+ YG
Sbjct: 592 LIDMYSKCGNLDLACRVFDMMEEKNEVSWNSIIAAYG 628
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 89/380 (23%), Positives = 173/380 (45%), Gaps = 76/380 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCNW---------------------TSMMGMYNV 42
G ++H ++I GV L FL S L++++ T+M+ Y +
Sbjct: 368 GKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMAHKIFDQRTPVDIVVCTAMISGYVL 427
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G + +F ++ + +R + V AC+ L +GK+++ +++ G +C
Sbjct: 428 NGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILK-NGHGGSCY 486
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
V ++++D YAKC L ++H F I KD V
Sbjct: 487 -----------------------------VGSAIMDMYAKCGKLDLAHQTFIGISXKDAV 517
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
WN+M+ + G EE +L +M M T + + +S+S L+ACA + + GK IH
Sbjct: 518 CWNSMITSCSQNGKPEEAIDLFRQMGMAGT--KYDCVSISAALSACANLPALHYGKEIHA 575
Query: 223 YVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+++R I + + CG + +C VF+ + ++ V WNSII+A+ G++ D
Sbjct: 576 FMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDMMEEKNEVSWNSIIAAYGNHGRLKD 635
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------LGTGSFV--WNALI 319
+L+L ++ ++P+ VT ++++ AC + +G LG + + + ++
Sbjct: 636 SLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMV 695
Query: 320 DMYGRCGAIQKSRKIFVLMP 339
D++GR G + ++ + MP
Sbjct: 696 DLFGRAGRLNEAFGMINSMP 715
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 117/262 (44%), Gaps = 24/262 (9%)
Query: 114 GRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYAL 173
GR L + + ++ L+ Y C + F +++ WN M+ G+ +
Sbjct: 65 GRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTM 124
Query: 174 GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG----------- 222
G + LL +M+ P+ + V+ AC + V LG+ +H
Sbjct: 125 MGQFDFA--LLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDV 182
Query: 223 YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
+V I + G + + +F+++ ++D V+WN +++ +V++G +A + ++
Sbjct: 183 FVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRT 242
Query: 283 NVKPNTVTIVSVLPAC-----------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKS 331
PN+VT VL C L + GL S V N L+ MY +CG + +
Sbjct: 243 ETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDA 302
Query: 332 RKIFVLMPHKNLVSWNVMISVY 353
R++F +MP +LV+WN MIS Y
Sbjct: 303 RRLFDMMPKTDLVTWNGMISGY 324
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 98/238 (41%), Gaps = 53/238 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+ LG ++H H++ G ++GS +++++ W SM+
Sbjct: 466 LTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGKLDLAHQTFIGISXKDAVCWNSMITS 525
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ G EE ++LF M G + D AC+ L GK+++ +M+ F +
Sbjct: 526 CSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSD 585
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ L+D++ KCG +++ +F+ M+ +K
Sbjct: 586 LFAESALIDMYSKCGNLDLACRVFDMME------------------------------EK 615
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+ VSWN+++A Y G ++ NL M+ +QP+ ++ +++AC V G
Sbjct: 616 NEVSWNSIIAAYGNHGRLKDSLNLFH--GMLGDGIQPDHVTFLAIISACGHAGQVDEG 671
>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Vitis vinifera]
Length = 889
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 106/345 (30%), Positives = 170/345 (49%), Gaps = 56/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y+ +G YEE + LF M+++ +PD + +AC L D GK V+DYM
Sbjct: 284 SWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYM 342
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I+ +E C D +N LI+ YAKC L S
Sbjct: 343 ITSGYE---------------C---------------DTTASNILINMYAKCGNLLASQE 372
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS +K KD VSWN+M+ Y G +E L +M++TD++P++++ +L+ Q+
Sbjct: 373 VFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF---KMMKTDVKPDSVTYVMLLSMSTQL 429
Query: 212 KGVKLGKAIH------GY-----VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ LGK +H G+ V + + CG + S VF + RD++ WN+II
Sbjct: 430 GDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTII 489
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLG 309
++ V S L ++ + V P+ T++S+LP C LAA Q GL
Sbjct: 490 ASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLE 549
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ V N LI+MY +CG+++ S ++F LM K++V+W +IS G
Sbjct: 550 SDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACG 594
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/395 (25%), Positives = 180/395 (45%), Gaps = 81/395 (20%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
E+ +H ++ G ++G+ L++++C +W S++ Y
Sbjct: 132 EMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGY 191
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
N GY+ E + ++Y + GV PD + V +AC L G
Sbjct: 192 NANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEG---------------- 235
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEE--MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
+I GL E+ + +D +VNN L+ Y K L F K+
Sbjct: 236 ----------------DIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVL 279
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+D VSWN M+ GY+ G EE L MEM+ +P+ ++++ +L AC + ++ GK
Sbjct: 280 RDAVSWNTMICGYSQVGLYEESIKLF--MEMVN-QFKPDLLTITSILQACGHLGDLEFGK 336
Query: 219 AIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
+H Y++ I++ CG ++ S VF+ + +D V WNS+I+ ++++G
Sbjct: 337 YVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNG 396
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWN 316
+A+ L + ++ +VKP++VT V +L +L L G + V N
Sbjct: 397 SFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSN 455
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
L+DMY +CG + S K+F M +++++WN +I+
Sbjct: 456 TLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIA 490
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 158/343 (46%), Gaps = 55/343 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ G + E ++L+ ++PD + P V AC+ L D+ + K ++D ++
Sbjct: 83 WNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVL 142
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ F + + L+D++ + ++ +FEEM
Sbjct: 143 DMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEM-------------------------- 176
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
+D+VSWN++++GY G+ E + + + P++ ++S VL AC +
Sbjct: 177 ----PLRDVVSWNSLISGYNANGYWNEALEIYYRFRNL--GVVPDSYTMSSVLRACGGLG 230
Query: 213 GVKLGKAIHGYVLRHHIH---------LSTACGF--VICSCSVFNQLSTRDVVVWNSIIS 261
V+ G IHG + + I LS C F +I +F+++ RD V WN++I
Sbjct: 231 SVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMIC 290
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGT 310
+ + G +++ L + +V KP+ +TI S+L AC L L G
Sbjct: 291 GYSQVGLYEESIKLFME-MVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYEC 349
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ N LI+MY +CG + S+++F M K+ VSWN MI+VY
Sbjct: 350 DTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVY 392
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 68/125 (54%), Gaps = 12/125 (9%)
Query: 241 SCSVFNQLS-TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
S SVF S + +V +WNSII A +G +AL L + ++P+T T SV+ AC
Sbjct: 67 SFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACA 126
Query: 300 KL-----------AALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
L L G G+ ++ NALIDMY R + K+RK+F MP +++VSWN
Sbjct: 127 GLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNS 186
Query: 349 MISVY 353
+IS Y
Sbjct: 187 LISGY 191
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 36/176 (20%)
Query: 46 YEEIVNLFYLMIDK----GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+ E NL MI + GV PD + CS L R GK+++ C
Sbjct: 494 HSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIH-----------GC 542
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ K G ++ D V N LI+ Y+KC L+ S F +K KD+
Sbjct: 543 I--------FKLG-----------LESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDV 583
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
V+W A+++ + G ++ EME + P+ ++ ++ AC+ V+ G
Sbjct: 584 VTWTALISACGMYGEGKKAVRAFGEME--AAGIVPDHVAFVAIIFACSHSGLVEEG 637
>gi|297743485|emb|CBI36352.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 164/329 (49%), Gaps = 63/329 (19%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y+ +G V+++ M+++GV PD + P + K + + G++++D+++
Sbjct: 87 WNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIV 146
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ F N V+ L+ L+ G + + G+
Sbjct: 147 KLGFSSNVFVQNALIHLYSLSGEVSVARGV------------------------------ 176
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + + D+V+WN M++GY +E L DEME ++ + P++I+L VL+AC+++K
Sbjct: 177 FDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMR--VLPSSITLVSVLSACSKLK 234
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
+ +GK +H + F+++ RD V W ++I +++ + +
Sbjct: 235 DLNVGKRVHR--------------------NYFDKMPERDFVSWTAMIDGYLQVNRFKEV 274
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDM 321
L L R++ AN+KP+ T+VS+L AC L AL G + SFV NALIDM
Sbjct: 275 LSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDM 334
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
Y CG ++K+ +IF MPH++ +SW +I
Sbjct: 335 YFNCGNVEKAIRIFNAMPHRDKISWTAVI 363
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 33/201 (16%)
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
WN M+ GY+ G ++ EM++ + P+ + +L + VK G+ +H +
Sbjct: 87 WNNMIKGYSRVGCPNSAVSMY--CEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDH 144
Query: 224 VLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
+++ IHL + G V + VF++ S DVV WN +IS + RS Q ++
Sbjct: 145 IVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDES 204
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSR 332
+ L ++ V P+++T+VSVL AC KL + L G V R
Sbjct: 205 MKLFDEMERMRVLPSSITLVSVLSACSKL----KDLNVGKRV----------------HR 244
Query: 333 KIFVLMPHKNLVSWNVMISVY 353
F MP ++ VSW MI Y
Sbjct: 245 NYFDKMPERDFVSWTAMIDGY 265
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 84/188 (44%), Gaps = 39/188 (20%)
Query: 30 FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
F +WT+M+ Y + ++E+++LF M ++PD F + AC+ L +G+ +
Sbjct: 255 FVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKA 314
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
Y+ + + ++ V L+D++ CG +E +F M
Sbjct: 315 YIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAM----------------------- 351
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM--------EMIQT-DMQPNTIS 200
+D +SW A++ G A+ G+ EE ++ +M E+I+ ++PN+I
Sbjct: 352 -------PHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVIKNMPVKPNSIV 404
Query: 201 LSGVLAAC 208
+L AC
Sbjct: 405 WGSLLGAC 412
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 11/122 (9%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
VF+ + + VWN++I + R G A+ + +++ V P+ T +L + A
Sbjct: 75 VFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTA 134
Query: 304 LP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+ G + FV NALI +Y G + +R +F ++V+WNVMIS
Sbjct: 135 VKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISG 194
Query: 353 YG 354
Y
Sbjct: 195 YN 196
>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
lyrata]
gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
lyrata]
Length = 886
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 111/407 (27%), Positives = 196/407 (48%), Gaps = 87/407 (21%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYE--------------- 47
+G QVHA+ + G EL +F+ + L+ ++ + +LG +E
Sbjct: 216 MGKQVHAYGLRKG-ELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLC 274
Query: 48 ------EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
E + M+ +GV PD F V ACS L+ R GK+++ Y +
Sbjct: 275 QNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYAL--------- 325
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK-FSKIKQKD 160
K G +D++ V ++L+D Y C+ + +S C+ F + +
Sbjct: 326 ----------KNG----------SLDENSFVGSALVDMYCNCKQV-LSGCRVFDGMFDRK 364
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+ WNAM+ GYA + EE L EME + N+ +++GV+ AC + +AI
Sbjct: 365 IGLWNAMITGYAQNEYDEEALLLFIEMEE-SAGLLANSTTMAGVVPACVRSGAFSKKEAI 423
Query: 221 HGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
HG+V++ + + + G + + +F ++ RD+V WN+II+ +V S +
Sbjct: 424 HGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERH 483
Query: 270 VDALDLLRDVIV-----------ANVKPNTVTIVSVLPACLKLAALPQG----------- 307
DAL +L + + ++KPN++T++++LP+C L+AL +G
Sbjct: 484 EDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNN 543
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L T V +AL+DMY +CG +Q SRK+F +P +N+++WNV++ YG
Sbjct: 544 LATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYG 590
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/395 (24%), Positives = 181/395 (45%), Gaps = 85/395 (21%)
Query: 1 MELGIQVHAHLIVCG-VELCAFLGSQLLEVFCN---------------------WTSMMG 38
+ G ++HA+ + G ++ +F+GS L++++CN W +M+
Sbjct: 314 LRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMIT 373
Query: 39 MYNVLGYYEEIVNLFYLMIDK-GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
Y Y EE + LF M + G+ + V AC + + ++ ++
Sbjct: 374 GYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFV------ 427
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
VKR L D+D V N+L+D Y++ + ++ F K++
Sbjct: 428 ----VKRGL--------------------DRDRFVQNALMDMYSRLGKIDIAKRIFGKME 463
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ---------TDMQPNTISLSGVLAAC 208
+DLV+WN ++ GY E+ +L +M++++ ++PN+I+L +L +C
Sbjct: 464 DRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSC 523
Query: 209 AQVKGVKLGKAIHGYVLRHHIHLSTACG------FVICSC-----SVFNQLSTRDVVVWN 257
A + + GK IH Y +++++ A G + C C VF+Q+ R+V+ WN
Sbjct: 524 AALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWN 583
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-------- 309
I+ A+ G DA+D+LR ++V VKPN VT +SV AC + +GL
Sbjct: 584 VIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKD 643
Query: 310 ----TGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340
S + ++D+ GR G ++++ ++ L+P
Sbjct: 644 YGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPR 678
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 157/333 (47%), Gaps = 56/333 (16%)
Query: 47 EEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPL 106
E V + MI G++PD+F P + KA ++L+D +GK ++ ++ +
Sbjct: 75 REAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGY---------- 124
Query: 107 LDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNA 166
G +T V N+L++ Y KC + F +I +++ VSWN+
Sbjct: 125 -------GVDSVT------------VANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNS 165
Query: 167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV---KGVKLGKAIHGY 223
+++ +L F + L M+ D++P++ +L V AC+ +G+ +GK +H Y
Sbjct: 166 LIS--SLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAY 223
Query: 224 VLRHH----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
LR + + G + S + RD+V WN+++S+ ++ Q ++AL
Sbjct: 224 GLRKGELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEAL 283
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNALIDM 321
+ LR++++ V+P+ TI SVLPAC L L G L SFV +AL+DM
Sbjct: 284 EYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDM 343
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
Y C + ++F M + + WN MI+ Y
Sbjct: 344 YCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYA 376
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 101/404 (25%), Positives = 177/404 (43%), Gaps = 86/404 (21%)
Query: 1 MELGIQVHAHLIVCGVEL---------------CAFLGSQLLEVF--------CNWTSMM 37
M+LG Q+HAH+ G + C G+ + +VF +W S++
Sbjct: 109 MDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGA-VYKVFDRISERNQVSWNSLI 167
Query: 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL---KDYRVGKDVYDYMISI 94
+E + F M+D+ V P F V ACS + +GK V+ Y
Sbjct: 168 SSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAY---- 223
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFS 154
GL + F++ N+L+ Y K L S
Sbjct: 224 --------------------------GLRKGELNSFII-NTLVAMYGKMGKLASSKVLLG 256
Query: 155 KIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM-EMIQTDMQPNTISLSGVLAACAQVKG 213
+ +DLV+WN +L+ E+ L+ + EM+ ++P+ ++S VL AC+ ++
Sbjct: 257 SFEGRDLVTWNTVLSSLCQN---EQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEM 313
Query: 214 VKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ GK +H Y L++ + + C V+ C VF+ + R + +WN++I+
Sbjct: 314 LRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMIT 373
Query: 262 AFVRSGQVVDALDLLRDV-IVANVKPNTVTIVSVLPACLKLAALPQ-----------GLG 309
+ ++ +AL L ++ A + N+ T+ V+PAC++ A + GL
Sbjct: 374 GYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLD 433
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
FV NAL+DMY R G I +++IF M ++LV+WN +I+ Y
Sbjct: 434 RDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGY 477
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW 315
W ++ + VRS + +A+ D+IV +KP+ ++L A L + G + V+
Sbjct: 61 WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120
Query: 316 ------------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
N L+++Y +CG K+F + +N VSWN +IS
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLIS 168
>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Vitis vinifera]
Length = 853
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 119/462 (25%), Positives = 206/462 (44%), Gaps = 116/462 (25%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLL-------------------EVFCN--WTSMMGMYNV 42
G Q HA ++V G+ LG++LL ++C+ W M+ + +
Sbjct: 65 GRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTM 124
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE----- 97
+G ++ + ++ M+ G PD + P V KAC L +G+ V+D + + FE
Sbjct: 125 MGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFV 184
Query: 98 ---------GNACV--------KRP---------LLDLFIKCGRMEITSGLFEEM----- 126
N C+ + P +L+ ++K G + +G+F EM
Sbjct: 185 GSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTET 244
Query: 127 -----------------------------------DQDFLVNNSLIDFYAKCRYLKVSHC 151
+ D V N+L+ YAKC +L +
Sbjct: 245 NPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARR 304
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + + DLV+WN M++GY GF +E + L EM I M+P++I+ S L ++
Sbjct: 305 LFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEM--ISARMKPDSITFSSFLPLLSEG 362
Query: 212 KGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSII 260
++ GK IH Y++R+ + L C V + +F+Q + D+VV ++I
Sbjct: 363 ATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMI 422
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLG 309
S +V +G +AL++ R ++ ++ N+VT+ SVLPAC LAAL G G
Sbjct: 423 SGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHG 482
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+V +A++DMY +CG + + + F+ + K+ V WN MI+
Sbjct: 483 GSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMIT 524
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 106/397 (26%), Positives = 182/397 (45%), Gaps = 75/397 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ G Q+H ++ G+E+ + + + LL ++ W M+
Sbjct: 264 INFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISG 323
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G+ +E LF+ MI ++PD SE R GK+++ Y+I
Sbjct: 324 YVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVS-- 381
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
LD+F+K ++LID Y KCR ++++ F +
Sbjct: 382 -------LDVFLK---------------------SALIDIYFKCRDVEMARKIFDQRTPV 413
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+V AM++GY L G + ++Q M+ N+++L+ VL ACA + + LGK
Sbjct: 414 DIVVCTAMISGYVLNGMNNNALEIF--RWLLQERMRANSVTLASVLPACAGLAALTLGKE 471
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+HG++L++ + + CG + + F +S +D V WNS+I++ ++G+
Sbjct: 472 LHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGK 531
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNA 317
+A+DL R + +A K + V+I + L AC L AL G + F +A
Sbjct: 532 PEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESA 591
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
LIDMY +CG + + ++F M KN VSWN +I+ YG
Sbjct: 592 LIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYG 628
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 89/383 (23%), Positives = 174/383 (45%), Gaps = 76/383 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNW---------------------TSMMGM 39
+ G ++H ++I GV L FL S L++++ T+M+
Sbjct: 365 LRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISG 424
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y + G + +F ++ + +R + V AC+ L +GK+++ +++ G
Sbjct: 425 YVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILK-NGHGG 483
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+C V ++++D YAKC L ++H F I K
Sbjct: 484 SCY-----------------------------VGSAIMDMYAKCGRLDLAHQTFIGISDK 514
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D V WN+M+ + G EE +L +M M T + + +S+S L+ACA + + GK
Sbjct: 515 DAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGT--KYDCVSISAALSACANLPALHYGKE 572
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH +++R I + + CG + +C VF+ + ++ V WNSII+A+ G+
Sbjct: 573 IHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGR 632
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------LGTGSFV--WN 316
+ D+L+L ++ ++P+ VT ++++ AC + +G LG + + +
Sbjct: 633 LKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYA 692
Query: 317 ALIDMYGRCGAIQKSRKIFVLMP 339
++D++GR G + ++ + MP
Sbjct: 693 CMVDLFGRAGRLNEAFGMINSMP 715
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 117/262 (44%), Gaps = 24/262 (9%)
Query: 114 GRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYAL 173
GR L + + ++ L+ Y C + F +++ WN M+ G+ +
Sbjct: 65 GRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTM 124
Query: 174 GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG----------- 222
G + LL +M+ P+ + V+ AC + V LG+ +H
Sbjct: 125 MGQFDFA--LLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDV 182
Query: 223 YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
+V I + G + + +F+++ ++D V+WN +++ +V++G +A + ++
Sbjct: 183 FVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRT 242
Query: 283 NVKPNTVTIVSVLPAC-----------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKS 331
PN+VT VL C L + GL S V N L+ MY +CG + +
Sbjct: 243 ETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDA 302
Query: 332 RKIFVLMPHKNLVSWNVMISVY 353
R++F +MP +LV+WN MIS Y
Sbjct: 303 RRLFDMMPKTDLVTWNGMISGY 324
>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
Length = 675
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 177/347 (51%), Gaps = 31/347 (8%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ + + ++ M+ G P+ + P + K+C++ K + G+ ++ ++
Sbjct: 32 WNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAKSKAFEEGRQIHAQVL 91
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFE-EMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + V L+ ++ + G +E +F+ +D + +LI YA + +
Sbjct: 92 KLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALITGYASRGDFRSARK 151
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I ++D+VSWNAM+ GY G EE L EM ++T+++P+ +L V++ACAQ
Sbjct: 152 VFDEITERDVVSWNAMITGYVENGRYEEALELFKEM--MRTNVRPDEGTLVSVVSACAQS 209
Query: 212 KGVKLGKAIHGYVLRHH---------------IHLSTACGFVICSCSVFNQLSTRDVVVW 256
++LG+ +H +V I L + CG V + +F LS +DVV W
Sbjct: 210 GSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSW 269
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP----------- 305
N++I + + +AL L ++++ + PN VT++SVLPAC L A+
Sbjct: 270 NTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDK 329
Query: 306 --QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+G+ + + +LIDMY +CG I+ + ++F M +++L SWN MI
Sbjct: 330 KLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMI 376
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 140/333 (42%), Gaps = 53/333 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G YEE + LF M+ VRPD V AC++ +G+ V+ ++
Sbjct: 163 SWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWV 222
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + N+LID Y+KC ++ +
Sbjct: 223 DDDDDDHG--------------------------FSSSLKIVNALIDLYSKCGDVETAFG 256
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + KD+VSWN ++ GY +E LL EM+++ PN ++L VL ACA +
Sbjct: 257 LFEGLSCKDVVSWNTLIGGYTHTNLYKEA--LLLFQEMLRSGECPNDVTLLSVLPACAHL 314
Query: 212 KGVKLGKAIHGYV------------LRHH-IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ +G+ IH Y+ LR I + CG + + VFN + R + WN+
Sbjct: 315 GAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNA 374
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------- 307
+I F G+ A DL + V+P+ +T V +L AC L G
Sbjct: 375 MIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDY 434
Query: 308 -LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
L + +ID+ G G +++ ++ MP
Sbjct: 435 NLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMP 467
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 125/258 (48%), Gaps = 59/258 (22%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I++ +L+ WN ML G+A + V+ L + M+ PN+ S +L +CA+ K
Sbjct: 21 FETIQEPNLLIWNTMLRGHASSS--DPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAKSK 78
Query: 213 GVKLGKAIHGYVLR------HHIHLSTACGFV-------------------ICSCS---- 243
+ G+ IH VL+ ++H S + + SC+
Sbjct: 79 AFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALIT 138
Query: 244 -------------VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
VF++++ RDVV WN++I+ +V +G+ +AL+L ++++ NV+P+ T
Sbjct: 139 GYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGT 198
Query: 291 IVSVLPACLKLAALPQGLGTGSFVW---------------NALIDMYGRCGAIQKSRKIF 335
+VSV+ AC + ++ G S+V NALID+Y +CG ++ + +F
Sbjct: 199 LVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLF 258
Query: 336 VLMPHKNLVSWNVMISVY 353
+ K++VSWN +I Y
Sbjct: 259 EGLSCKDVVSWNTLIGGY 276
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
SVF + ++++WN+++ S V AL++ ++ PN+ + +L +C K
Sbjct: 19 SVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAKSK 78
Query: 303 ALPQG---------LGTG--SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
A +G LG G +V +LI MY R G ++ +RK+F H+++VS +I+
Sbjct: 79 AFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALIT 138
Query: 352 VYG 354
Y
Sbjct: 139 GYA 141
>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
Length = 948
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 106/345 (30%), Positives = 170/345 (49%), Gaps = 56/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y+ +G YEE + LF M+++ +PD + +AC L D GK V+DYM
Sbjct: 343 SWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYM 401
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I+ +E C D +N LI+ YAKC L S
Sbjct: 402 ITSGYE---------------C---------------DTTASNILINMYAKCGNLLASQE 431
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS +K KD VSWN+M+ Y G +E L +M++TD++P++++ +L+ Q+
Sbjct: 432 VFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF---KMMKTDVKPDSVTYVMLLSMSTQL 488
Query: 212 KGVKLGKAIH------GY-----VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ LGK +H G+ V + + CG + S VF + RD++ WN+II
Sbjct: 489 GDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTII 548
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLG 309
++ V S L ++ + V P+ T++S+LP C LAA Q GL
Sbjct: 549 ASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLE 608
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ V N LI+MY +CG+++ S ++F LM K++V+W +IS G
Sbjct: 609 SDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACG 653
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/395 (25%), Positives = 180/395 (45%), Gaps = 81/395 (20%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
E+ +H ++ G ++G+ L++++C +W S++ Y
Sbjct: 191 EMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGY 250
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
N GY+ E + ++Y + GV PD + V +AC L G
Sbjct: 251 NANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEG---------------- 294
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEE--MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
+I GL E+ + +D +VNN L+ Y K L F K+
Sbjct: 295 ----------------DIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVL 338
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+D VSWN M+ GY+ G EE L MEM+ +P+ ++++ +L AC + ++ GK
Sbjct: 339 RDAVSWNTMICGYSQVGLYEESIKLF--MEMVN-QFKPDLLTITSILQACGHLGDLEFGK 395
Query: 219 AIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
+H Y++ I++ CG ++ S VF+ + +D V WNS+I+ ++++G
Sbjct: 396 YVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNG 455
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWN 316
+A+ L + ++ +VKP++VT V +L +L L G + V N
Sbjct: 456 SFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSN 514
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
L+DMY +CG + S K+F M +++++WN +I+
Sbjct: 515 TLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIA 549
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 158/343 (46%), Gaps = 55/343 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ G + E ++L+ ++PD + P V AC+ L D+ + K ++D ++
Sbjct: 142 WNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVL 201
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ F + + L+D++ + ++ +FEEM
Sbjct: 202 XMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEM-------------------------- 235
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
+D+VSWN++++GY G+ E + + + P++ ++S VL AC +
Sbjct: 236 ----PLRDVVSWNSLISGYNANGYWNEALEIYYRFRNL--GVVPDSYTMSSVLRACGGLG 289
Query: 213 GVKLGKAIHGYVLRHHIH---------LSTACGF--VICSCSVFNQLSTRDVVVWNSIIS 261
V+ G IHG + + I LS C F +I +F+++ RD V WN++I
Sbjct: 290 SVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMIC 349
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGT 310
+ + G +++ L + +V KP+ +TI S+L AC L L G
Sbjct: 350 GYSQVGLYEESIKLFME-MVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYEC 408
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ N LI+MY +CG + S+++F M K+ VSWN MI+VY
Sbjct: 409 DTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVY 451
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 67/125 (53%), Gaps = 12/125 (9%)
Query: 241 SCSVFNQLS-TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
S SVF S + +V WNSII A +G +AL L + ++P+T T SV+ AC
Sbjct: 126 SFSVFRLASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACA 185
Query: 300 KL-----------AALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
L L G G+ ++ NALIDMY R + K+RK+F MP +++VSWN
Sbjct: 186 GLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNS 245
Query: 349 MISVY 353
+IS Y
Sbjct: 246 LISGY 250
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 36/176 (20%)
Query: 46 YEEIVNLFYLMIDK----GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+ E NL MI + GV PD + CS L R GK+++ C
Sbjct: 553 HSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIH-----------GC 601
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ K G ++ D V N LI+ Y+KC L+ S F +K KD+
Sbjct: 602 I--------FKLG-----------LESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDV 642
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
V+W A+++ + G ++ EME + P+ ++ ++ AC+ V+ G
Sbjct: 643 VTWTALISACGMYGEGKKAVRAFGEME--AAGIVPDHVAFVAIIFACSHSGLVEEG 696
>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 104/386 (26%), Positives = 195/386 (50%), Gaps = 41/386 (10%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFC-----------------NWTSMMGMYNVLGYYEE 48
Q+HA ++ G+ L L +L+++ +W S++ Y V G +
Sbjct: 17 QIHAQTLIHGLPLQTHLIPKLIDLHSIDYARFVLDQTPSPTDFSWNSLIRAYTVHGSPQN 76
Query: 49 IVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLD 108
+ L+ M+ +P +F P V KACS L G+ ++ +++ + F + V L+D
Sbjct: 77 SLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHTHVLRLGFGSDLFVCNSLID 136
Query: 109 LFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIK-QKDLVSWNA 166
++ KC R++ +++M +D + NS+I Y + ++ + F ++ ++++V W A
Sbjct: 137 MYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKARDLFEEMPMRRNVVCWTA 196
Query: 167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR 226
M+ GY G E+ +L +M + ++QPN ++ +L+AC+ + ++G+ + ++
Sbjct: 197 MINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLCNYEVGRFLSVFIDV 256
Query: 227 HHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDL 275
+ I L+T CG V + +F+ +S +++ WN+II+ V+ G + +A+DL
Sbjct: 257 NKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDL 316
Query: 276 LRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGR 324
R + +VKPN +T+V+VL AC L AL GL + AL+DMY +
Sbjct: 317 YRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILATALVDMYAK 376
Query: 325 CGAIQKSRKIFVLMPHKNLVSWNVMI 350
CG I + IFV K++ WN MI
Sbjct: 377 CGKIDDACLIFVKTSEKDVALWNAMI 402
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/346 (26%), Positives = 166/346 (47%), Gaps = 60/346 (17%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKG--VRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
WT+M+ Y G + E+++LF M+ V+P+ + ACS L +Y VG+
Sbjct: 194 WTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLCNYEVGR----- 248
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
L +FI ++ + + L +LID Y+KC ++ +
Sbjct: 249 ---------------FLSVFIDVNKIPLNTILV----------TALIDMYSKCGDVEKAW 283
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + K+L SWNA++ G GG EE +L M+ ++PN I+L VL+ACA
Sbjct: 284 RIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMK--AQSVKPNEITLVNVLSACAG 341
Query: 211 VKGVKLGKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ ++LG+ +H Y+ R+ ++ L+TA CG + +C +F + S +DV +WN++
Sbjct: 342 LGALELGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAM 401
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC------------LKLAALPQG 307
I G D+L + ++ A V+PN VT + VL AC A G
Sbjct: 402 ILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHG 461
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIF--VLMPHKNLVSWNVMIS 351
L + ++D+ GR G ++++ ++ +L+P +++ W ++S
Sbjct: 462 LSPKLEHYACMVDLLGRAGHLKEAYELVQNMLIPPDSII-WGALLS 506
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 24/173 (13%)
Query: 199 ISLSGVLAACAQVKGVKLGKAIHGYVLRHHI-------HLSTACGFVICSCSVFNQLSTR 251
+SL + Q+ + IHG L+ H+ H FV+ +Q +
Sbjct: 3 LSLLRTATSLTQIHQIHAQTLIHGLPLQTHLIPKLIDLHSIDYARFVL------DQTPSP 56
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---- 307
WNS+I A+ G ++L L ++ ++ KP+ T VL AC L ++ +G
Sbjct: 57 TDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIH 116
Query: 308 -----LGTGS--FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
LG GS FV N+LIDMY +C + +R + M ++ VSWN +IS Y
Sbjct: 117 THVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGY 169
>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 716
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 113/395 (28%), Positives = 183/395 (46%), Gaps = 75/395 (18%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
EL +HA + G E AF+G+ L++ + +WT M+ Y
Sbjct: 58 ELAYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACY 117
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+++ + LF M G P+HF V KAC L+ + VGK V+ ++ +E +
Sbjct: 118 AENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDL 177
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
V LLDL+ K G +FEEM + D
Sbjct: 178 YVGVGLLDLYTKFGDANDVLRVFEEM------------------------------PKHD 207
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
++ W+ M++ YA E L +M + + PN + + VL +CA ++ ++LGK +
Sbjct: 208 VIPWSFMISRYAQSNQSREAVELFGQMR--RAFVLPNQFTFASVLQSCASIENLQLGKQV 265
Query: 221 HGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H +VL+ ++ +S A CG + S +F +L R+ V WN++I +V+SG
Sbjct: 266 HCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDG 325
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------VWNAL 318
AL L ++++ V+ + VT SVL AC LAA+ G S V NAL
Sbjct: 326 DKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNAL 385
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
IDMY +CG+I+ +R +F ++ ++ +SWN MIS Y
Sbjct: 386 IDMYAKCGSIKNARLVFDMLSERDEISWNAMISGY 420
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 151/344 (43%), Gaps = 60/344 (17%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W+ M+ Y E V LF M V P+ F V ++C+ +++ ++GK V+ +++
Sbjct: 211 WSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVL 270
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ +GN V L+D++ KCGR++ + LF E+
Sbjct: 271 KVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMEL-------------------------- 304
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
++ V+WN M+ GY G ++ +L M++ +Q + ++ S VL ACA +
Sbjct: 305 ----PNRNEVTWNTMIVGYVQSGDGDKALSLYK--NMLECQVQASEVTYSSVLRACASLA 358
Query: 213 GVKLGKAIHGYVLRH-----------HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++LG IH L+ I + CG + + VF+ LS RD + WN++IS
Sbjct: 359 AMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMIS 418
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------- 314
+ G V +AL + + PN +T VS+L AC L +G F
Sbjct: 419 GYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLD--IGQNYFKSMVQDYG 476
Query: 315 -------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ ++ + GR G + K+ K+ +P N+ W ++
Sbjct: 477 IEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALL 520
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 104/239 (43%), Gaps = 53/239 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++LG QVH H++ G++ F+ + L++V+ W +M+
Sbjct: 259 LQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVG 318
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G ++ ++L+ M++ V+ V +AC+ L +G ++ + ++ +
Sbjct: 319 YVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKD 378
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V L+D++ KCG ++ N L+ F + ++
Sbjct: 379 VVVGNALIDMYAKCGSIK---------------NARLV---------------FDMLSER 408
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
D +SWNAM++GY++ G E M+ +T+ PN ++ +L+AC+ + +G+
Sbjct: 409 DEISWNAMISGYSMHGLVGEALKAFQMMQ--ETECVPNKLTFVSILSACSNAGLLDIGQ 465
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 93/219 (42%), Gaps = 20/219 (9%)
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP---NTISLSGVLAACAQVK 212
+ ++ VS+ ++ GY +EV +L + ++ P TI V CA++
Sbjct: 1 MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60
Query: 213 G------VKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
KLG + +V I CG V + F+ ++ +D+V W +++ + +
Sbjct: 61 YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVW 315
+ D+L L ++ + PN T VL AC+ L A G +V
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVG 180
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L+D+Y + G ++F MP +++ W+ MIS Y
Sbjct: 181 VGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYA 219
>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
Length = 787
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 119/396 (30%), Positives = 184/396 (46%), Gaps = 76/396 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
ELG +HA + G E AF+G+ L++ + +WT M+ +
Sbjct: 156 ELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCF 215
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
++E + LF M G +P++F V+KAC L+ + VGK V+ + ++E
Sbjct: 216 AENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYE--- 272
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
LDL+ V +L+D Y K + + F +I +KD
Sbjct: 273 ------LDLY---------------------VGVALLDLYTKSGDIDDARXAFEEIPKKD 305
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
++ W+ M+A YA +E + +M Q + PN + + VL ACA ++G+ LG I
Sbjct: 306 VIPWSFMIARYAQSDQSKEAVEMF--FQMRQALVLPNQFTFASVLQACATMEGLNLGNQI 363
Query: 221 HGYVLRHHIH----LSTA-------CGFVICSCSVFNQLSTR-DVVVWNSIISAFVRSGQ 268
H +V++ +H +S A CG + S +F + R DV WN++I V+ G
Sbjct: 364 HCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVIVGHVQLGD 423
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------VWNA 317
AL L +++ V+ VT S L AC LAAL GL S V NA
Sbjct: 424 GEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNA 483
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
LIDMY +CG+I+ +R +F LM ++ VSWN MIS Y
Sbjct: 484 LIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGY 519
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 109/252 (43%), Gaps = 32/252 (12%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D N L++ Y K +L + F ++ +++ +S+ ++ GYA E L+ +E
Sbjct: 72 DLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYA------ESVRFLEAIE 125
Query: 189 MI----QTDMQPNTISLSGVLAACAQVKGVKLGKAIHG--YVLRHH---------IHLST 233
+ + + N + +L + +LG IH + L H I +
Sbjct: 126 LFVRLHREGHELNPFVFTTILKLLVSMDCGELGWGIHACIFKLGHESNAFVGTALIDAYS 185
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
CG V + VF+ + +D+V W +++ F + +AL L + + KPN T S
Sbjct: 186 VCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFAS 245
Query: 294 VLPACLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
V ACL L A G +V AL+D+Y + G I +R F +P K+
Sbjct: 246 VFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKD 305
Query: 343 LVSWNVMISVYG 354
++ W+ MI+ Y
Sbjct: 306 VIPWSFMIARYA 317
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 106/247 (42%), Gaps = 44/247 (17%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W+ M+ Y +E V +F+ M V P+ F V +AC+ ++ +G ++ ++I
Sbjct: 309 WSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVI 368
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
I + D V+N+L+D YAKC ++ S
Sbjct: 369 KIG------------------------------LHSDVFVSNALMDVYAKCGRMENSMXL 398
Query: 153 FSKIKQK-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F++ + D+ WN ++ G+ G E+ L + M++ +Q ++ S L ACA +
Sbjct: 399 FAESPHRNDVTPWNTVIVGHVQLGDGEKALRLF--LNMLEYRVQATEVTYSSALRACASL 456
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ G IH ++ I + CG + + VF+ ++ +D V WN++I
Sbjct: 457 AALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMI 516
Query: 261 SAFVRSG 267
S + G
Sbjct: 517 SGYSMHG 523
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 88/216 (40%), Gaps = 52/216 (24%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN----------------------WTSMMG 38
+ LG Q+H H+I G+ F+ + L++V+ W +++
Sbjct: 357 LNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVIV 416
Query: 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
+ LG E+ + LF M++ V+ +AC+ L G ++ + F
Sbjct: 417 GHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTF-- 474
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
D+D +V N+LID YAKC +K + F + +
Sbjct: 475 ----------------------------DKDIVVTNALIDMYAKCGSIKDARLVFDLMNK 506
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDM 194
+D VSWNAM++GY++ G LLD+ + T M
Sbjct: 507 QDEVSWNAMISGYSMHGLACANAGLLDQGQAYFTSM 542
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/212 (19%), Positives = 91/212 (42%), Gaps = 22/212 (10%)
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
N L ++ GF + L E + + N+ + + L C Q GK +H +
Sbjct: 5 NNFLIRFSRRGFSVQSAKLTQEFVGHVSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEI 64
Query: 225 LRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
L+ +++ F+ + +F+++ R+ + + ++I + S + ++A+
Sbjct: 65 LKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAI 124
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-----------TGSFVWNALIDMY 322
+L + + N ++L + + G G + +FV ALID Y
Sbjct: 125 ELFVRLHREGHELNPFVFTTILKLLVSMDCGELGWGIHACIFKLGHESNAFVGTALIDAY 184
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
CG + +R++F + +K++VSW M++ +
Sbjct: 185 SVCGRVDVAREVFDGILYKDMVSWTGMVTCFA 216
>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 618
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 104/340 (30%), Positives = 179/340 (52%), Gaps = 27/340 (7%)
Query: 35 SMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI 94
S + Y+ L E + F M VR F P ++K+C+ L VGK V+ +I
Sbjct: 66 SFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFKSCASLLAIDVGKQVHSLVIRY 125
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEE-MDQDFLVNNSLIDFYAKCRYLKVSHCKF 153
F + + L++ + K + +F+ + +D + N LI Y++ + + F
Sbjct: 126 GFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAYNCLISAYSRSGEVLAARELF 185
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDM-QPNTISLSGVLAACAQVK 212
K++ + +VSWNAM++ YA G + + M Q +M +PN I+L+ VL+ CA++
Sbjct: 186 DKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRM---QDEMCEPNEITLATVLSICAKLG 242
Query: 213 ----GVKLGKAIHGYVLRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIIS 261
G+++ K L ++ +STA CG V VF+ ++ RDVV W+++I+
Sbjct: 243 DLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIA 302
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS--------- 312
+ ++G+ +AL+L ++ A +KPN VT+VSVL AC +L ++ G GS
Sbjct: 303 GYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLIS 362
Query: 313 --FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+V +AL+ MY +CG I K+R+IF +P ++ V+WN MI
Sbjct: 363 NVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMI 402
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 134/288 (46%), Gaps = 43/288 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G Y + +F M D+ P+ V C++L D +G +
Sbjct: 195 SWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSICAKLGDLEMGLRIKKLN 254
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ N V +L++++KCG ++ +F+ M
Sbjct: 255 DNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHM------------------------- 289
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
++D+V+W+AM+AGYA G E L + M+ Q ++PN ++L VL+ACAQ+
Sbjct: 290 -----ARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQ--IKPNDVTLVSVLSACAQL 342
Query: 212 KGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
V+ G+ I YV L ++++++A CG +I + +F++L RD V WNS+I
Sbjct: 343 GSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMI 402
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
+G DA+ L + VKPN +T V ++ AC + GL
Sbjct: 403 MGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVELGL 450
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 99/221 (44%), Gaps = 53/221 (23%)
Query: 187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCS--- 243
+ M Q +++ ++ + +CA + + +GK +H V+R+ H S C + +
Sbjct: 85 VSMHQNNVRIVCFTIPPIFKSCASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKI 144
Query: 244 --------VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL-----RDVIVANV------ 284
+F+ + +D + +N +ISA+ RSG+V+ A +L R ++ N
Sbjct: 145 NDLGSAELIFDGILVKDTIAYNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYA 204
Query: 285 --------------------KPNTVTIVSVLPACLKLAALPQGL-----------GTGSF 313
+PN +T+ +VL C KL L GL G+
Sbjct: 205 QNGDYHKGWIIFQRMQDEMCEPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMI 264
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V A+++MY +CGA+ R +F M +++V+W+ MI+ Y
Sbjct: 265 VSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYA 305
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 60/162 (37%), Gaps = 42/162 (25%)
Query: 235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV 294
F+ + VF+Q+ D V S I+A+ R +AL + NV+ TI +
Sbjct: 43 ASFIQYARQVFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPI 102
Query: 295 LPACLKLAALP-----------QGLGTGSFVWNALIDMYG-------------------- 323
+C L A+ G + F NALI+ Y
Sbjct: 103 FKSCASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDT 162
Query: 324 -----------RCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
R G + +R++F M +++VSWN MIS Y
Sbjct: 163 IAYNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYA 204
>gi|255594521|ref|XP_002536106.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223520840|gb|EEF26277.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 519
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/380 (25%), Positives = 180/380 (47%), Gaps = 59/380 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ YN +G +E + +F M+ V P F V+ +C+ L +GK ++ ++
Sbjct: 39 SWTTMIVGYNQMGRFESAIKMFVAMMKDKVLPTQFTVTNVFASCAALGALDIGKKIHSFV 98
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSH 150
I + G V LL+++ K G + +F+ M + + N +I + ++
Sbjct: 99 IKLGLSGCVPVANSLLNMYAKAGDSVMAKIVFDRMRLRSISSWNIMISLHMHGGRADLAL 158
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+F ++ ++D+V+WN+M+ GY+ GF +E L M++ ++P+ +L+ +L+ACA
Sbjct: 159 AQFEQMSERDVVTWNSMITGYSQHGFDKEALELFS--RMLEDSLKPDRFTLASILSACAN 216
Query: 211 VKGVKLGKAIHGYVLRHHIHLS-------------------------------------- 232
++ + LGK IH Y++R +S
Sbjct: 217 IENLNLGKQIHSYIIRTEFDISGVVQNALISMYAKTGGVEIAQSIVEQSGISDLNVIAFT 276
Query: 233 ------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286
G + + +F+ L DVV W ++I +V++G DA++L R + +P
Sbjct: 277 ALLDGYVKLGNITPARHIFDSLKDSDVVAWTAMIVGYVQNGLNDDAMELFRIMAKEGPRP 336
Query: 287 NTVTIVSVLPACLKLAALPQG-------LGTGS----FVWNALIDMYGRCGAIQKSRKIF 335
N+ T+ ++L +A+L G + +G V NALI MY + G+I ++++F
Sbjct: 337 NSFTLAAMLSVSSNVASLNHGKQIHASAIRSGENLSVSVGNALITMYAKAGSITDAQQVF 396
Query: 336 VLMP-HKNLVSWNVMISVYG 354
L+ +K+ VSW MI G
Sbjct: 397 NLIQRNKDTVSWTSMIIALG 416
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 95/376 (25%), Positives = 182/376 (48%), Gaps = 33/376 (8%)
Query: 5 IQVHAHLIVCGVELCAFLGSQLLEV-FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRP 63
I +H H + L F Q+ E W SM+ Y+ G+ +E + LF M++ ++P
Sbjct: 145 ISLHMHGGRADLALAQF--EQMSERDVVTWNSMITGYSQHGFDKEALELFSRMLEDSLKP 202
Query: 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLF 123
D F + AC+ +++ +GK ++ Y+I +F+ + V+ L+ ++ K G +EI +
Sbjct: 203 DRFTLASILSACANIENLNLGKQIHSYIIRTEFDISGVVQNALISMYAKTGGVEIAQSIV 262
Query: 124 EE---MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEV 180
E+ D + + +L+D Y K + + F +K D+V+W AM+ GY G ++
Sbjct: 263 EQSGISDLNVIAFTALLDGYVKLGNITPARHIFDSLKDSDVVAWTAMIVGYVQNGLNDDA 322
Query: 181 TNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVIC 240
L M + +PN+ +L+ +L+ + V + GK IH +R +LS + G +
Sbjct: 323 MELFRIMA--KEGPRPNSFTLAAMLSVSSNVASLNHGKQIHASAIRSGENLSVSVGNALI 380
Query: 241 SC-----------SVFNQLS-TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288
+ VFN + +D V W S+I A + G ++++L ++ +KP+
Sbjct: 381 TMYAKAGSITDAQQVFNLIQRNKDTVSWTSMIIALGQHGLGQESIELFEKMLALGIKPDH 440
Query: 289 VTIVSVLPACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFV 336
+T V VL AC + + QG G + + + +ID++GR G +Q++
Sbjct: 441 ITYVGVLSACTHVGLVEQGRGYFNLMTSIHKIEPTLSHYACMIDLFGRAGLLQEAFSFIE 500
Query: 337 LMP-HKNLVSWNVMIS 351
MP ++++W ++S
Sbjct: 501 NMPIEPDVIAWGSLLS 516
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 110/254 (43%), Gaps = 55/254 (21%)
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
N+++ YAK L +H F +I +D VSW M+ GY G E + + M++
Sbjct: 10 NTILTGYAKLGTLAKAHSVFDEIPDRDSVSWTTMIVGYNQMGRFESAIKMF--VAMMKDK 67
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH------------------------- 228
+ P +++ V A+CA + + +GK IH +V++
Sbjct: 68 VLPTQFTVTNVFASCAALGALDIGKKIHSFVIKLGLSGCVPVANSLLNMYAKAGDSVMAK 127
Query: 229 -----------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
I L G + + F Q+S RDVV WNS+I+ + + G +
Sbjct: 128 IVFDRMRLRSISSWNIMISLHMHGGRADLALAQFEQMSERDVVTWNSMITGYSQHGFDKE 187
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------VWNALID 320
AL+L ++ ++KP+ T+ S+L AC + L G S+ V NALI
Sbjct: 188 ALELFSRMLEDSLKPDRFTLASILSACANIENLNLGKQIHSYIIRTEFDISGVVQNALIS 247
Query: 321 MYGRCGAIQKSRKI 334
MY + G ++ ++ I
Sbjct: 248 MYAKTGGVEIAQSI 261
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 11/129 (8%)
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
G + + SVF+++ RD V W ++I + + G+ A+ + ++ V P T+ +V
Sbjct: 20 GTLAKAHSVFDEIPDRDSVSWTTMIVGYNQMGRFESAIKMFVAMMKDKVLPTQFTVTNVF 79
Query: 296 PACLKLAALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLV 344
+C L AL G SF V N+L++MY + G ++ +F M +++
Sbjct: 80 ASCAALGALDIGKKIHSFVIKLGLSGCVPVANSLLNMYAKAGDSVMAKIVFDRMRLRSIS 139
Query: 345 SWNVMISVY 353
SWN+MIS++
Sbjct: 140 SWNIMISLH 148
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 23/146 (15%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC----------------------NWTSMMGMYN 41
G Q+HA I G L +G+ L+ ++ +WTSM+
Sbjct: 357 GKQIHASAIRSGENLSVSVGNALITMYAKAGSITDAQQVFNLIQRNKDTVSWTSMIIALG 416
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI-KFEGNA 100
G +E + LF M+ G++PDH V AC+ + G+ ++ M SI K E
Sbjct: 417 QHGLGQESIELFEKMLALGIKPDHITYVGVLSACTHVGLVEQGRGYFNLMTSIHKIEPTL 476
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEM 126
++DLF + G ++ E M
Sbjct: 477 SHYACMIDLFGRAGLLQEAFSFIENM 502
>gi|125587253|gb|EAZ27917.1| hypothetical protein OsJ_11878 [Oryza sativa Japonica Group]
Length = 583
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 167/345 (48%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ Y G+ + + +F M+ +G RP+ F V KAC+E K R GK ++ +
Sbjct: 215 SWTTMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVLKACAEEKAVRFGKQLHCAV 274
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ ++ D + ++L+ YA+C + +
Sbjct: 275 LKKMYK------------------------------NDIHIGSALVTMYARCGEVFDAQA 304
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +++ ++W +M++GYA G E+ L +M+M + + N +++ G+L+AC +
Sbjct: 305 VFDMMPRRNTITWTSMISGYAQSGHGEKAILLFRKMKMRRVFV--NNLTIVGLLSACGSL 362
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVI----CSCS-------VFNQLSTRDVVVWNSII 260
+ LGK +H ++++ + + G + C C + + RD + W ++I
Sbjct: 363 QSPYLGKELHAQIIKNSMEENLQIGSTLVWFYCKCGEYTYAARILEAMPDRDAISWTALI 422
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG----------- 309
S + G V+AL L D++ VKPNT T S L AC KL AL G
Sbjct: 423 SGYNNLGHNVEALKSLDDMLWDGVKPNTYTYSSALKACAKLEALQYGRKIHGFVNKTQDF 482
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ FV ++LIDMY RCG + ++R +F MP NLV+W V+I+ +
Sbjct: 483 SNVFVGSSLIDMYMRCGKVDEARSVFDAMPEHNLVTWKVIITGFA 527
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/351 (27%), Positives = 162/351 (46%), Gaps = 69/351 (19%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH--FVCPKVYKACSELKDYRVGKDVYD 89
+WT+MM +Y LG+Y E+V LF+ M+ GV+ + FVC + K+C E D ++G+ V+
Sbjct: 115 SWTAMMNVYLKLGHYGEVVRLFFDMVGSGVQGNSLTFVC--LLKSCGERCDAKLGQQVHC 172
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
++ + N V + + +CG + S +F++M
Sbjct: 173 CIVKGGWS-NVIVDSAIAHFYAQCGDVASASAIFDKM----------------------- 208
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
+D++SW M+ Y G + + EM+ +PN ++ VL ACA
Sbjct: 209 -------AYRDVISWTTMITAYVQHGHGGQALRMFS--EMVSEGFRPNEFTVCSVLKACA 259
Query: 210 QVKGVKLGKAIHGYVL----RHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNS 258
+ K V+ GK +H VL ++ IH+ +A CG V + +VF+ + R+ + W S
Sbjct: 260 EEKAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTITWTS 319
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA---------------A 303
+IS + +SG A+ L R + + V N +TIV +L AC L +
Sbjct: 320 MISGYAQSGHGEKAILLFRKMKMRRVFVNNLTIVGLLSACGSLQSPYLGKELHAQIIKNS 379
Query: 304 LPQGLGTGS-FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ + L GS VW Y +CG + +I MP ++ +SW +IS Y
Sbjct: 380 MEENLQIGSTLVW-----FYCKCGEYTYAARILEAMPDRDAISWTALISGY 425
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 127/247 (51%), Gaps = 27/247 (10%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCK--FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
V N+LI YA R+ +VS + F ++ ++ +VSW AM+ Y G EV L +
Sbjct: 83 FVANNLISAYA--RFDEVSDAREVFDEMPERSVVSWTAMMNVYLKLGHYGEVVRLF--FD 138
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----------IHLSTACGFV 238
M+ + +Q N+++ +L +C + KLG+ +H +++ H CG V
Sbjct: 139 MVGSGVQGNSLTFVCLLKSCGERCDAKLGQQVHCCIVKGGWSNVIVDSAIAHFYAQCGDV 198
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ ++F++++ RDV+ W ++I+A+V+ G AL + +++ +PN T+ SVL AC
Sbjct: 199 ASASAIFDKMAYRDVISWTTMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVLKAC 258
Query: 299 -----------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
L A L + + +AL+ MY RCG + ++ +F +MP +N ++W
Sbjct: 259 AEEKAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTITWT 318
Query: 348 VMISVYG 354
MIS Y
Sbjct: 319 SMISGYA 325
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 122/281 (43%), Gaps = 43/281 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WTSM+ Y G+ E+ + LF M + V ++ + AC L+ +GK+++ +
Sbjct: 316 TWTSMISGYAQSGHGEKAILLFRKMKMRRVFVNNLTIVGLLSACGSLQSPYLGKELHAQI 375
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I E N + L+ + KCG + + E M
Sbjct: 376 IKNSMEENLQIGSTLVWFYCKCGEYTYAARILEAM------------------------- 410
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+D +SW A+++GY G E LD+M + ++PNT + S L ACA++
Sbjct: 411 -----PDRDAISWTALISGYNNLGHNVEALKSLDDM--LWDGVKPNTYTYSSALKACAKL 463
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ ++ G+ IHG+V + I + CG V + SVF+ + ++V W II
Sbjct: 464 EALQYGRKIHGFVNKTQDFSNVFVGSSLIDMYMRCGKVDEARSVFDAMPEHNLVTWKVII 523
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
+ F ++G +AL + + + + + +VL +C L
Sbjct: 524 TGFAQNGLCEEALKYMYLMQQEGHEVDDFVLSTVLTSCGDL 564
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 104/245 (42%), Gaps = 55/245 (22%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYN 41
LG ++HA +I +E +GS L+ +C +WT+++ YN
Sbjct: 367 LGKELHAQIIKNSMEENLQIGSTLVWFYCKCGEYTYAARILEAMPDRDAISWTALISGYN 426
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
LG+ E + M+ GV+P+ + KAC++L+ + G+ ++ ++ + N
Sbjct: 427 NLGHNVEALKSLDDMLWDGVKPNTYTYSSALKACAKLEALQYGRKIHGFVNKTQDFSNVF 486
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
V L+D++++CG+++ +F+ M + +L
Sbjct: 487 VGSSLIDMYMRCGKVDEARSVFDAM------------------------------PEHNL 516
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA--QVKGVKLGKA 219
V+W ++ G+A G EE + M+ Q + + LS VL +C Q K + +
Sbjct: 517 VTWKVIITGFAQNGLCEEALKYMYLMQ--QEGHEVDDFVLSTVLTSCGDLQWKSISFSDS 574
Query: 220 IHGYV 224
+ G V
Sbjct: 575 VAGSV 579
Score = 45.1 bits (105), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 286 PNTVTIVSVLPAC--------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVL 337
PN + S L C + A+ G+FV N LI Y R + +R++F
Sbjct: 48 PNAEALASSLRDCGGADGVRRVHAVAVRSLDSLGTFVANNLISAYARFDEVSDAREVFDE 107
Query: 338 MPHKNLVSWNVMISVY 353
MP +++VSW M++VY
Sbjct: 108 MPERSVVSWTAMMNVY 123
>gi|297722397|ref|NP_001173562.1| Os03g0644100 [Oryza sativa Japonica Group]
gi|53749418|gb|AAU90276.1| PPR repeat containing protein [Oryza sativa Japonica Group]
gi|108710059|gb|ABF97854.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
gi|215707171|dbj|BAG93631.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255674740|dbj|BAH92290.1| Os03g0644100 [Oryza sativa Japonica Group]
Length = 616
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 167/345 (48%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ Y G+ + + +F M+ +G RP+ F V KAC+E K R GK ++ +
Sbjct: 248 SWTTMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVLKACAEEKAVRFGKQLHCAV 307
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ ++ D + ++L+ YA+C + +
Sbjct: 308 LKKMYK------------------------------NDIHIGSALVTMYARCGEVFDAQA 337
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +++ ++W +M++GYA G E+ L +M+M + + N +++ G+L+AC +
Sbjct: 338 VFDMMPRRNTITWTSMISGYAQSGHGEKAILLFRKMKMRRVFV--NNLTIVGLLSACGSL 395
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVI----CSCS-------VFNQLSTRDVVVWNSII 260
+ LGK +H ++++ + + G + C C + + RD + W ++I
Sbjct: 396 QSPYLGKELHAQIIKNSMEENLQIGSTLVWFYCKCGEYTYAARILEAMPDRDAISWTALI 455
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG----------- 309
S + G V+AL L D++ VKPNT T S L AC KL AL G
Sbjct: 456 SGYNNLGHNVEALKSLDDMLWDGVKPNTYTYSSALKACAKLEALQYGRKIHGFVNKTQDF 515
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ FV ++LIDMY RCG + ++R +F MP NLV+W V+I+ +
Sbjct: 516 SNVFVGSSLIDMYMRCGKVDEARSVFDAMPEHNLVTWKVIITGFA 560
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 99/351 (28%), Positives = 167/351 (47%), Gaps = 69/351 (19%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH--FVCPKVYKACSELKDYRVGKDVYD 89
+WT+MM +Y LG+Y E+V LF+ M+ GV+ + FVC + K+C E D ++G+ V+
Sbjct: 148 SWTAMMNVYLKLGHYGEVVRLFFDMVGSGVQGNSLTFVC--LLKSCGERCDAKLGQQVH- 204
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
C+ +K G + +V++++ FYA+C + +
Sbjct: 205 ----------CCI--------VKGGWSNV------------IVDSAIAHFYAQCGDVASA 234
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F K+ +D++SW M+ Y G + + EM+ +PN ++ VL ACA
Sbjct: 235 SAIFDKMAYRDVISWTTMITAYVQHGHGGQALRMFS--EMVSEGFRPNEFTVCSVLKACA 292
Query: 210 QVKGVKLGKAIHGYVL----RHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNS 258
+ K V+ GK +H VL ++ IH+ +A CG V + +VF+ + R+ + W S
Sbjct: 293 EEKAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTITWTS 352
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA---------------A 303
+IS + +SG A+ L R + + V N +TIV +L AC L +
Sbjct: 353 MISGYAQSGHGEKAILLFRKMKMRRVFVNNLTIVGLLSACGSLQSPYLGKELHAQIIKNS 412
Query: 304 LPQGLGTGS-FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ + L GS VW Y +CG + +I MP ++ +SW +IS Y
Sbjct: 413 MEENLQIGSTLVW-----FYCKCGEYTYAARILEAMPDRDAISWTALISGY 458
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 127/247 (51%), Gaps = 27/247 (10%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCK--FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
V N+LI YA R+ +VS + F ++ ++ +VSW AM+ Y G EV L +
Sbjct: 116 FVANNLISAYA--RFDEVSDAREVFDEMPERSVVSWTAMMNVYLKLGHYGEVVRLF--FD 171
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----------IHLSTACGFV 238
M+ + +Q N+++ +L +C + KLG+ +H +++ H CG V
Sbjct: 172 MVGSGVQGNSLTFVCLLKSCGERCDAKLGQQVHCCIVKGGWSNVIVDSAIAHFYAQCGDV 231
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ ++F++++ RDV+ W ++I+A+V+ G AL + +++ +PN T+ SVL AC
Sbjct: 232 ASASAIFDKMAYRDVISWTTMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVLKAC 291
Query: 299 -----------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
L A L + + +AL+ MY RCG + ++ +F +MP +N ++W
Sbjct: 292 AEEKAVRFGKQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTITWT 351
Query: 348 VMISVYG 354
MIS Y
Sbjct: 352 SMISGYA 358
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 122/281 (43%), Gaps = 43/281 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WTSM+ Y G+ E+ + LF M + V ++ + AC L+ +GK+++ +
Sbjct: 349 TWTSMISGYAQSGHGEKAILLFRKMKMRRVFVNNLTIVGLLSACGSLQSPYLGKELHAQI 408
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I E N + L+ + KCG + + E M
Sbjct: 409 IKNSMEENLQIGSTLVWFYCKCGEYTYAARILEAM------------------------- 443
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+D +SW A+++GY G E LD+M + ++PNT + S L ACA++
Sbjct: 444 -----PDRDAISWTALISGYNNLGHNVEALKSLDDM--LWDGVKPNTYTYSSALKACAKL 496
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ ++ G+ IHG+V + I + CG V + SVF+ + ++V W II
Sbjct: 497 EALQYGRKIHGFVNKTQDFSNVFVGSSLIDMYMRCGKVDEARSVFDAMPEHNLVTWKVII 556
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
+ F ++G +AL + + + + + +VL +C L
Sbjct: 557 TGFAQNGLCEEALKYMYLMQQEGHEVDDFVLSTVLTSCGDL 597
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 104/245 (42%), Gaps = 55/245 (22%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYN 41
LG ++HA +I +E +GS L+ +C +WT+++ YN
Sbjct: 400 LGKELHAQIIKNSMEENLQIGSTLVWFYCKCGEYTYAARILEAMPDRDAISWTALISGYN 459
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
LG+ E + M+ GV+P+ + KAC++L+ + G+ ++ ++ + N
Sbjct: 460 NLGHNVEALKSLDDMLWDGVKPNTYTYSSALKACAKLEALQYGRKIHGFVNKTQDFSNVF 519
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
V L+D++++CG+++ +F+ M + +L
Sbjct: 520 VGSSLIDMYMRCGKVDEARSVFDAM------------------------------PEHNL 549
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA--QVKGVKLGKA 219
V+W ++ G+A G EE + M+ Q + + LS VL +C Q K + +
Sbjct: 550 VTWKVIITGFAQNGLCEEALKYMYLMQ--QEGHEVDDFVLSTVLTSCGDLQWKSISFSDS 607
Query: 220 IHGYV 224
+ G V
Sbjct: 608 VAGSV 612
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G+FV N LI Y R + +R++F MP +++VSW M++VY
Sbjct: 114 GTFVANNLISAYARFDEVSDAREVFDEMPERSVVSWTAMMNVY 156
>gi|302782567|ref|XP_002973057.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
gi|300159658|gb|EFJ26278.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
Length = 531
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/389 (25%), Positives = 181/389 (46%), Gaps = 50/389 (12%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G +HA ++ +E F+GS L+ ++ WTS+M Y
Sbjct: 74 GKAIHARIVSSNME-SDFVGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQ 132
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G+Y E ++L+ M +GV D AC+ L + GK ++ + F+ + V
Sbjct: 133 TGHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHLRVSECGFQ-SLVV 191
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
LL ++ KCG ++ +F + + V N+L+ YAKC L+++ F +KDLV
Sbjct: 192 HTALLTMYAKCGELDAARAVFNRLASNVAVQNALVTMYAKCGSLELAKSAFEASGRKDLV 251
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SWNAM+ YA G E +L M + P+ ++++ L+ACA ++LG+ IH
Sbjct: 252 SWNAMIGAYAQHGLGREALDLY--QTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHS 309
Query: 223 YVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
VL++ +++ CG + + S+F + RDV+ W ++ S + + G
Sbjct: 310 RVLKNQSFQSSLMVQTALVNMYGRCGRLETARSMFEDMGQRDVLSWTAMTSVYAQQGHAD 369
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA------------L 318
LDL ++++ ++PN +T S+L C L +G+ + + +
Sbjct: 370 QVLDLYLEMVLHGIRPNEITFTSILVGCSHAGLLARGVECFLEMQSEHEVVPIREHFLCM 429
Query: 319 IDMYGRCGAIQKSRKIFVLMPHK-NLVSW 346
+D+ GR G ++ + + MP++ + V+W
Sbjct: 430 VDLLGRSGRLRDAEALVESMPYQPDSVAW 458
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 165/375 (44%), Gaps = 88/375 (23%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ Y G+ +E ++L+ M G++PD AC++L D GK ++ +
Sbjct: 25 SWTSMISSYANNGFCDEALDLYQQMDADGIQPDSITFTSALLACTKLAD---GKAIHARI 81
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+S M+ DF V ++LI+ YA+C + +
Sbjct: 82 VS------------------------------SNMESDF-VGSALINMYARCGDVSSARQ 110
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F KI+ K +V W +++ Y G E +L M+ + + ++ L ACA +
Sbjct: 111 AFEKIQNKHVVCWTSLMTAYVQTGHYREALDLYGRMD--HEGVHADGVTYVTALGACASL 168
Query: 212 KGVKLGKAIHGYV-------LRHHIHLST---ACGFVICSCSVFNQLST----------- 250
+K GKAIH V L H L T CG + + +VFN+L++
Sbjct: 169 GALKEGKAIHLRVSECGFQSLVVHTALLTMYAKCGELDAARAVFNRLASNVAVQNALVTM 228
Query: 251 -------------------RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI 291
+D+V WN++I A+ + G +ALDL + + V P+ VTI
Sbjct: 229 YAKCGSLELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTI 288
Query: 292 VSVLPACLKLAALPQG-------LGTGSF-----VWNALIDMYGRCGAIQKSRKIFVLMP 339
S L AC +L G L SF V AL++MYGRCG ++ +R +F M
Sbjct: 289 ASSLSACAISGSLQLGREIHSRVLKNQSFQSSLMVQTALVNMYGRCGRLETARSMFEDMG 348
Query: 340 HKNLVSWNVMISVYG 354
++++SW M SVY
Sbjct: 349 QRDVLSWTAMTSVYA 363
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 122/266 (45%), Gaps = 55/266 (20%)
Query: 139 FYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT 198
Y KC ++ + F IK +D VSW +M++ YA GF +E +L +M+ +QP++
Sbjct: 1 MYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDA--DGIQPDS 58
Query: 199 ISLSGVLAACAQVKGVKLGKAIHGYVLRHH----------IHLSTACGFVICSCSVFNQL 248
I+ + L AC ++ GKAIH ++ + I++ CG V + F ++
Sbjct: 59 ITFTSALLACTKLAD---GKAIHARIVSSNMESDFVGSALINMYARCGDVSSARQAFEKI 115
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG- 307
+ VV W S+++A+V++G +ALDL + V + VT V+ L AC L AL +G
Sbjct: 116 QNKHVVCWTSLMTAYVQTGHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGK 175
Query: 308 ---------------------------------------LGTGSFVWNALIDMYGRCGAI 328
L + V NAL+ MY +CG++
Sbjct: 176 AIHLRVSECGFQSLVVHTALLTMYAKCGELDAARAVFNRLASNVAVQNALVTMYAKCGSL 235
Query: 329 QKSRKIFVLMPHKNLVSWNVMISVYG 354
+ ++ F K+LVSWN MI Y
Sbjct: 236 ELAKSAFEASGRKDLVSWNAMIGAYA 261
>gi|297800206|ref|XP_002867987.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297313823|gb|EFH44246.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 616
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 114/397 (28%), Positives = 181/397 (45%), Gaps = 78/397 (19%)
Query: 2 ELGIQVHAHLIVCGV-------------ELCAFLGSQLLEV-------FCNWTSMMGMYN 41
ELG QVH +++ GV C L S L +WT+++ +
Sbjct: 201 ELGRQVHGNMVKVGVGNLIVESSLVYFYAQCGELTSALRAFDMMEEKDVISWTAVISACS 260
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G+ + + +F M++ G P+ F + KACSE K R G+ V+ ++
Sbjct: 261 RKGHGNKAIFMFIGMLNHGFLPNEFTVCSILKACSEEKAIRFGRQVHSLVVK-------- 312
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK--FSKIKQK 159
RM + D V SL+D YAKC ++S C+ F + +
Sbjct: 313 -------------RM---------IKTDVFVGTSLMDMYAKCG--EISDCRKVFDGMSNR 348
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+ V+W +++A +A GF EE +L M+ + + N +++ +L AC V + LGK
Sbjct: 349 NTVTWTSIIAAHAREGFGEEAISLFRVMK--RRHLIANNLTVVSILRACGSVGALLLGKE 406
Query: 220 IHGYVLRHHIHLSTACG----FVICSC-------SVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H ++++ I + G ++ C C +V QL +RDVV W ++IS G
Sbjct: 407 LHAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGH 466
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNA 317
+ALD L+++I V+PN T S L AC +L G S FV +A
Sbjct: 467 ESEALDFLKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSA 526
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
LI MY +CG + ++ ++F MP KNLVSW MI Y
Sbjct: 527 LIHMYAKCGFVSEAFRVFDSMPEKNLVSWKAMIMGYA 563
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 157/345 (45%), Gaps = 60/345 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH---FVCPKVYKACSELKDYRVGKDVY 88
WT+M+ Y G +E +LF + G+R + FVC + CS ++ +G+ V+
Sbjct: 150 TWTAMIDGYLKFGLEDEAFSLFEDYVKHGIRFTNERMFVC--LLNLCSRRSEFELGRQVH 207
Query: 89 DYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKV 148
M+ + GN V+ L+ + +CG E+TS L
Sbjct: 208 GNMVKVGV-GNLIVESSLVYFYAQCG--ELTSALR------------------------- 239
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
F +++KD++SW A+++ + G + + + M+ PN ++ +L AC
Sbjct: 240 ---AFDMMEEKDVISWTAVISACSRKGHGNKAIFMF--IGMLNHGFLPNEFTVCSILKAC 294
Query: 209 AQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWN 257
++ K ++ G+ +H V++ I + CG + VF+ +S R+ V W
Sbjct: 295 SEEKAIRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWT 354
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------- 307
SII+A R G +A+ L R + ++ N +T+VS+L AC + AL G
Sbjct: 355 SIIAAHAREGFGEEAISLFRVMKRRHLIANNLTVVSILRACGSVGALLLGKELHAQIIKN 414
Query: 308 -LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ ++ + L+ +Y +CG + + + +P +++VSW MIS
Sbjct: 415 SIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMIS 459
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 144/330 (43%), Gaps = 64/330 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ G QVH+ ++ ++ F+G+ L++++ WTS++
Sbjct: 300 IRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWTSIIAA 359
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ G+ EE ++LF +M + + ++ + +AC + +GK+++ +I E N
Sbjct: 360 HAREGFGEEAISLFRVMKRRHLIANNLTVVSILRACGSVGALLLGKELHAQIIKNSIEKN 419
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ L+ L+ KCG E F V ++ +
Sbjct: 420 VYIGSTLVWLYCKCG----------ESRDAFNV--------------------LQQLPSR 449
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSW AM++G + G E + L EM IQ ++PN + S L ACA + + +G++
Sbjct: 450 DVVSWTAMISGCSSLGHESEALDFLKEM--IQEGVEPNPFTYSSALKACANSESLLIGRS 507
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH ++H IH+ CGFV + VF+ + +++V W ++I + R+G
Sbjct: 508 IHSIAKKNHALSNVFVGSALIHMYAKCGFVSEAFRVFDSMPEKNLVSWKAMIMGYARNGF 567
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+AL L+ + + + ++L C
Sbjct: 568 CREALKLMYRMEAEGFEVDDYIFATILSTC 597
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 116/250 (46%), Gaps = 24/250 (9%)
Query: 127 DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDE 186
DQ N+LI + L + F + ++ V+W AM+ GY G +E +L +
Sbjct: 114 DQVIYFGNNLISSCVRLGDLVYARKVFDSMPDRNTVTWTAMIDGYLKFGLEDEAFSLFE- 172
Query: 187 MEMIQTDMQ-PNTISLSGVLAACAQVKGVKLGKAIHGYVLR----------HHIHLSTAC 235
+ ++ ++ N +L C++ +LG+ +HG +++ ++ C
Sbjct: 173 -DYVKHGIRFTNERMFVCLLNLCSRRSEFELGRQVHGNMVKVGVGNLIVESSLVYFYAQC 231
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
G + + F+ + +DV+ W ++ISA R G A+ + ++ PN T+ S+L
Sbjct: 232 GELTSALRAFDMMEEKDVISWTAVISACSRKGHGNKAIFMFIGMLNHGFLPNEFTVCSIL 291
Query: 296 PACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLV 344
AC + A+ G + T FV +L+DMY +CG I RK+F M ++N V
Sbjct: 292 KACSEEKAIRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTV 351
Query: 345 SWNVMISVYG 354
+W +I+ +
Sbjct: 352 TWTSIIAAHA 361
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 102/231 (44%), Gaps = 53/231 (22%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYN 41
LG ++HA +I +E ++GS L+ ++C +WT+M+ +
Sbjct: 403 LGKELHAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCS 462
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
LG+ E ++ MI +GV P+ F KAC+ + +G+ ++ SI + +A
Sbjct: 463 SLGHESEALDFLKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIH----SIAKKNHA- 517
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
L ++F V ++LI YAKC ++ + F + +K+L
Sbjct: 518 ----LSNVF---------------------VGSALIHMYAKCGFVSEAFRVFDSMPEKNL 552
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
VSW AM+ GYA GF E L+ ME + + + +L+ C ++
Sbjct: 553 VSWKAMIMGYARNGFCREALKLMYRME--AEGFEVDDYIFATILSTCGDIE 601
>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 697
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/395 (27%), Positives = 181/395 (45%), Gaps = 75/395 (18%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVF--CN-------------------WTSMMGMYN 41
LG +H L+ G+ + +GS L+ ++ CN W +++ Y
Sbjct: 124 LGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYY 183
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G +EE + F +M G PD +C+ L D G++++ +++ F
Sbjct: 184 QSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGF----- 238
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
RM D V+ +L+D Y KC L+++ F ++ K +
Sbjct: 239 -------------RM------------DSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTV 273
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
V+WN+M+ GY G L M ++P +L+ L AC+Q + GK +H
Sbjct: 274 VAWNSMINGYGFKGDGISCIQLFKRM--YSEGVKPTLTTLTSTLMACSQSAQLLEGKFVH 331
Query: 222 GYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
GY++R+ I L CG V + ++F + V WN +IS +V G++
Sbjct: 332 GYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLF 391
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALI 319
DAL L ++ + V+P+ +T SVL AC +LAAL +G LG V AL+
Sbjct: 392 DALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIVERNLGNNEVVMGALL 451
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
DMY +CGA++++ +F +P ++LVSW MI+ YG
Sbjct: 452 DMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAYG 486
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/355 (25%), Positives = 161/355 (45%), Gaps = 68/355 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
++ G ++H L+ G + +F+ + L++++ W SM+
Sbjct: 223 LDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMING 282
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G + LF M +GV+P ACS+ GK V+ Y+I + +
Sbjct: 283 YGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQ-- 340
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D +N+SL+D Y KC ++ + F + +
Sbjct: 341 ----------------------------PDIFLNSSLMDLYFKCGKVESAETIFKLMPKT 372
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
VSWN M++GY G + L EM ++ ++P+ I+ + VLAAC+Q+ ++ G+
Sbjct: 373 TTVSWNVMISGYVTEGKLFDALRLFGEMS--KSFVEPDAITFTSVLAACSQLAALEKGRE 430
Query: 220 IHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH ++ ++ + CG V + VF L RD+V W S+I+A+ G+
Sbjct: 431 IHNLIVERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAYGSHGR 490
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYG 323
V +AL+L +++ +NVKP+ VT +++L AC + GL + +N +I++YG
Sbjct: 491 VYEALELFAEMLQSNVKPDRVTFLAILSACSHAGLVDDGL----YHFNQMINVYG 541
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 128/252 (50%), Gaps = 24/252 (9%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW-NAMLAGYALGGFREEVTNLL 184
+ D V +LI Y C + F I+ +S N ++AGY +E L
Sbjct: 34 LQNDVYVCKNLISLYVSCNLFDYAKNVFDVIENPFEISLCNGLMAGYTRNCMYDEALGLF 93
Query: 185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLST 233
D++ M ++P++ + VL AC ++ V LG+ IH +++ + +
Sbjct: 94 DKL-MCYPCLKPDSYTYPSVLKACGGLRRVVLGQMIHTCLVKEGLMVDIVVGSSLVGMYA 152
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
C C+ +F+++ +DV WN++IS + +SG+ +AL + +P++VTI +
Sbjct: 153 KCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITT 212
Query: 294 VLPACLKLAALPQG-------LGTG----SFVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
+ +C +L L +G + +G SFV AL+DMYG+CG ++ + ++F MP+K
Sbjct: 213 AISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKT 272
Query: 343 LVSWNVMISVYG 354
+V+WN MI+ YG
Sbjct: 273 VVAWNSMINGYG 284
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/347 (25%), Positives = 152/347 (43%), Gaps = 57/347 (16%)
Query: 30 FCNWTSMMGMYNVLGYYEEIVNLF-YLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY 88
CN +M Y Y+E + LF LM ++PD + P V KAC L+ +G+ ++
Sbjct: 72 LCN--GLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRVVLGQMIH 129
Query: 89 DYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKV 148
++ + V L+ ++ KC E LF+EM
Sbjct: 130 TCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEM---------------------- 167
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
KD+ WN +++ Y G EE M + +P++++++ +++C
Sbjct: 168 --------PDKDVACWNTVISCYYQSGKFEEALRYFGMMR--RFGFEPDSVTITTAISSC 217
Query: 209 AQVKGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWN 257
A++ + G+ IH ++ + + CG + + VF Q+ + VV WN
Sbjct: 218 ARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWN 277
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------- 307
S+I+ + G + + L + + VKP T+ S L AC + A L +G
Sbjct: 278 SMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRN 337
Query: 308 -LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ F+ ++L+D+Y +CG ++ + IF LMP VSWNVMIS Y
Sbjct: 338 RIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGY 384
>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
Length = 820
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/401 (26%), Positives = 180/401 (44%), Gaps = 83/401 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+ +G QVH H++ G++ ++ + LL+++ + W M+
Sbjct: 60 LAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISG 119
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G +E NLF LM +G+ PD F + ACS G++V+ ++ N
Sbjct: 120 YAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANN 179
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
A V L+ ++ KCG + +F+ M +
Sbjct: 180 ATVGNALISMYAKCGSVRDARRVFDAM------------------------------ASR 209
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D VSW + YA G+ +E +L M+Q ++P+ I+ VL+AC + ++ GK
Sbjct: 210 DEVSWTTLTGAYAESGYAQE--SLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQ 267
Query: 220 IHGYVL--RHH--IHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH ++ HH + +STA CG V + VF L RDV+ WN++I V SGQ
Sbjct: 268 IHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQ 327
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW------------- 315
+ +A + ++ V P+ VT +++L AC A P GL G +
Sbjct: 328 LEEAHGMFHRMLKECVAPDRVTYLAILSAC----ARPGGLACGKEIHARAVKDGLVSDVR 383
Query: 316 --NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
NALI+MY + G+++ +R++F MP +++VSW ++ Y
Sbjct: 384 FGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYA 424
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 157/329 (47%), Gaps = 55/329 (16%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G+Y L YL KG + D + K+ ++C + KD VGK V+++++ + N +
Sbjct: 24 GWYAPADVLQYLH-QKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYII 82
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
LL L++ CG + LF+ KFS K +VS
Sbjct: 83 NTLLKLYVHCGSVNEARRLFD---------------------------KFS---NKSVVS 112
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
WN M++GYA G +E NL M+ Q ++P+ + +L+AC+ + G+ +H
Sbjct: 113 WNVMISGYAHRGLGQEAFNLFTLMQ--QEGLEPDKFTFVSILSACSSPAALNWGREVHVR 170
Query: 224 VLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
V+ I + CG V + VF+ +++RD V W ++ A+ SG ++
Sbjct: 171 VMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQES 230
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-----------TGSFVWNALIDM 321
L ++ V+P+ +T ++VL AC LAAL +G + V AL M
Sbjct: 231 LKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKM 290
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
Y +CGA++ +R++F +P++++++WN MI
Sbjct: 291 YIKCGAVKDAREVFECLPNRDVIAWNTMI 319
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 150/344 (43%), Gaps = 56/344 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+G G EE +F+ M+ + V PD + AC+ GK+++
Sbjct: 315 WNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIH---- 370
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
R + D + D N+LI+ Y+K +K +
Sbjct: 371 ----------ARAVKDGLV----------------SDVRFGNALINMYSKAGSMKDARQV 404
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ ++D+VSW A++ GYA G + V + +M+Q ++ N I+ VL AC+
Sbjct: 405 FDRMPKRDVVSWTALVGGYADCG--QVVESFSTFKKMLQQGVEANKITYMCVLKACSNPV 462
Query: 213 GVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSIIS 261
+K GK IH V++ I A CG V + V +STRDVV WN++I
Sbjct: 463 ALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIG 522
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC----------LKLAALPQGLG-- 309
++G+ ++AL + ++PN T V+V+ AC + A++ + G
Sbjct: 523 GLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIV 582
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMISV 352
+ ++D+ R G + ++ + + MP K + W +++
Sbjct: 583 PTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAA 626
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 22/186 (11%)
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVI 239
Q Q ++ +L +C + K + +GK +H ++LR + L CG V
Sbjct: 37 QKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVN 96
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ +F++ S + VV WN +IS + G +A +L + ++P+ T VS+L AC
Sbjct: 97 EARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACS 156
Query: 300 KLAAL-----------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
AAL GL + V NALI MY +CG+++ +R++F M ++ VSW
Sbjct: 157 SPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTT 216
Query: 349 MISVYG 354
+ Y
Sbjct: 217 LTGAYA 222
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 76/178 (42%), Gaps = 34/178 (19%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+++G Y G E + F M+ +GV + V KACS + GK+++ +
Sbjct: 415 SWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEV 474
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + V L+ ++ KCG +E + E M
Sbjct: 475 VKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMS------------------------ 510
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQT-DMQPNTISLSGVLAAC 208
+D+V+WN ++ G A G E L + E++++ +M+PN + V++AC
Sbjct: 511 ------TRDVVTWNTLIGGLAQNGRGLEA---LQKFEVMKSEEMRPNATTFVNVMSAC 559
>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
Length = 728
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 100/373 (26%), Positives = 176/373 (47%), Gaps = 56/373 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+ + + G E + LF+ +++ GVRP+ V +AC EL D+ +G + +
Sbjct: 151 SWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLV 210
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSH 150
+ FE V L+ L ++ G +++ +F+ M++ D + +++D Y + L+ +
Sbjct: 211 VKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREAR 270
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ +++ +SW+AM+A Y+ G+ EE L +M+Q +PN + L+A A
Sbjct: 271 RIFDEMPERNEISWSAMIARYSQSGYAEEALKLFS--KMVQEGFKPNISCFACTLSALAS 328
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVI----CSCS-------VFNQLSTRDVVVWNS- 258
++ + G IHG+V + I G + C C VF+ + ++VV WNS
Sbjct: 329 LRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSM 388
Query: 259 ------------------------------IISAFVRSGQVVDALDLLRDVIVANVKPNT 288
II+ ++ + Q L++ ++V+ PN
Sbjct: 389 VGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNK 448
Query: 289 VTIVSVLPACLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVL 337
T SVL AC +A+L +G+ FV AL DMY +CG I S+++F
Sbjct: 449 STFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFER 508
Query: 338 MPHKNLVSWNVMI 350
MP KN +SW VMI
Sbjct: 509 MPEKNEISWTVMI 521
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/333 (23%), Positives = 140/333 (42%), Gaps = 75/333 (22%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W++M+ Y+ GY EE + LF M+ +G +P+ A + L+ G +++ ++
Sbjct: 283 SWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHV 342
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I +D+D + +SLID Y KC
Sbjct: 343 TKIG------------------------------IDKDVFIGSSLIDLYCKCGKPDDGRL 372
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGF----------------------------REEVTNL 183
F I +K++V WN+M+ GY++ G E+ +
Sbjct: 373 VFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKV 432
Query: 184 LDEMEMIQTDMQ-PNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTA---- 234
L+ + Q PN + S VL ACA + + G +HG +++ + I + TA
Sbjct: 433 LEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDM 492
Query: 235 ---CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV-IVANVKPNTVT 290
CG + S VF ++ ++ + W +I SG V++L L ++ + V PN +
Sbjct: 493 YAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELM 552
Query: 291 IVSVLPACLKLAALPQGLGTGSFVWNALIDMYG 323
++SVL AC + +GL + +N++ +YG
Sbjct: 553 LLSVLFACSHCGLVDKGL----WYFNSMEKVYG 581
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 139/314 (44%), Gaps = 57/314 (18%)
Query: 95 KFEG-NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCK 152
+F+G + V ++ +++ G + LF+EM + V+ ++LI K ++ S
Sbjct: 81 EFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWY 140
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + +++VSW A ++G+ G E L ++++ ++PN ++ + V+ AC ++
Sbjct: 141 FERNPFQNVVSWTAAISGFVRNGLNFEALKLF--FRLLESGVRPNDVTFTSVVRACGELG 198
Query: 213 GVKLGKAIHGYVLR----HH-------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
LG +I G V++ H+ I LS G + + VF+++ RDVV W +I+
Sbjct: 199 DFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILD 258
Query: 262 AFV-------------------------------RSGQVVDALDLLRDVIVANVKPNTVT 290
A+V +SG +AL L ++ KPN
Sbjct: 259 AYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISC 318
Query: 291 IVSVLPACLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLMP 339
L A L AL G+ F+ ++LID+Y +CG R +F L+
Sbjct: 319 FACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLIL 378
Query: 340 HKNLVSWNVMISVY 353
KN+V WN M+ Y
Sbjct: 379 EKNVVCWNSMVGGY 392
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 102/267 (38%), Gaps = 86/267 (32%)
Query: 136 LIDFYAKCRYLKVSHCKFSKIKQ-------KDLVSWNAMLAGYALGGFREEVTNLLDEME 188
L+ Y CR KF++I Q DLV N M++ Y G + L DEM
Sbjct: 62 LLILYLNCR-------KFAEIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMP 114
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQL 248
+ N +S S +++ + G V S F +
Sbjct: 115 ------ERNEVSWSALISGLMKY------------------------GRVEESMWYFERN 144
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
++VV W + IS FVR+G +AL L ++ + V+PN VT SV+ AC +L G+
Sbjct: 145 PFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGM 204
Query: 309 GTGSFV------------------------------------------WNALIDMYGRCG 326
V W A++D Y G
Sbjct: 205 SILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETG 264
Query: 327 AIQKSRKIFVLMPHKNLVSWNVMISVY 353
++++R+IF MP +N +SW+ MI+ Y
Sbjct: 265 DLREARRIFDEMPERNEISWSAMIARY 291
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 69/357 (19%), Positives = 126/357 (35%), Gaps = 115/357 (32%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+ GI +H H+ G++ F+GS L++++C W SM+G
Sbjct: 332 LSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGG 391
Query: 40 YNVLGYY-------------------------------EEIVNLFYLMIDKGVRPDHFVC 68
Y++ G E+++ +F ++ G P+
Sbjct: 392 YSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTF 451
Query: 69 PKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ 128
V AC+ + G +V+ +I + + + V L D++ KCG + + +FE M
Sbjct: 452 SSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERM-- 509
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
+K+ +SW M+ G A GF E L +EME
Sbjct: 510 ----------------------------PEKNEISWTVMIQGLAESGFAVESLILFEEME 541
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQL 248
+++ PN + L VL AC+ CG V FN +
Sbjct: 542 RT-SEVAPNELMLLSVLFACSH------------------------CGLVDKGLWYFNSM 576
Query: 249 STRDVVV-----WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ + ++ RSG++ +A + +R + +P ++L C K
Sbjct: 577 EKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTI---PFQPEANAWAALLSGCKK 630
>gi|242034867|ref|XP_002464828.1| hypothetical protein SORBIDRAFT_01g027350 [Sorghum bicolor]
gi|241918682|gb|EER91826.1| hypothetical protein SORBIDRAFT_01g027350 [Sorghum bicolor]
Length = 447
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/344 (26%), Positives = 168/344 (48%), Gaps = 54/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ Y G+ ++ + +F M+ +G RP+ F KAC+E K R GK ++ +
Sbjct: 79 SWTTMITAYVQHGHGDKALQMFPKMVSEGFRPNEFTVCSALKACAEEKALRFGKQLHGAI 138
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ ++ + V L+ ++ +CG + +F+
Sbjct: 139 VKRLYKYDIHVGSALVTMYARCGEVFDAQAVFD--------------------------- 171
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
K+ +++ ++W +M++GYA G EE L +M+M + + N +++ G+L+AC +
Sbjct: 172 ---KMPRRNTITWTSMISGYAQSGCGEEAVLLFRKMKMRRVFV--NHLTVVGLLSACGSM 226
Query: 212 KGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSII 260
+ + LGK +H ++++ + + + CG + + + RD V W ++I
Sbjct: 227 QSIYLGKELHAQIIKNCMEQNLQIGSTLVWFYSRCGEHTYAARILEAMPDRDAVAWTAMI 286
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG----------- 309
S + G V+AL L +++ V PNT T S L AC +L AL G
Sbjct: 287 SGYNNLGHNVEALKSLDEMLWDGVAPNTYTYSSALKACARLEALRDGRRIHGVVNKTQAF 346
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ FV +LIDMY RCG + ++R++F MP NLV+W VMI+ +
Sbjct: 347 SNVFVGCSLIDMYMRCGKVDEARRVFDAMPEHNLVTWKVMITGF 390
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 126/251 (50%), Gaps = 32/251 (12%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
+ +V++++ FYA+C + + F ++ +D+VSW M+ Y G ++ + +
Sbjct: 45 NVIVDSAVAHFYAQCGDVAAASTVFDRMASRDVVSWTTMITAYVQHGHGDKALQMFP--K 102
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL----RHHIHLSTA-------CGF 237
M+ +PN ++ L ACA+ K ++ GK +HG ++ ++ IH+ +A CG
Sbjct: 103 MVSEGFRPNEFTVCSALKACAEEKALRFGKQLHGAIVKRLYKYDIHVGSALVTMYARCGE 162
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
V + +VF+++ R+ + W S+IS + +SG +A+ L R + + V N +T+V +L A
Sbjct: 163 VFDAQAVFDKMPRRNTITWTSMISGYAQSGCGEEAVLLFRKMKMRRVFVNHLTVVGLLSA 222
Query: 298 CLKLAA---------------LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
C + + + Q L GS L+ Y RCG + +I MP ++
Sbjct: 223 CGSMQSIYLGKELHAQIIKNCMEQNLQIGS----TLVWFYSRCGEHTYAARILEAMPDRD 278
Query: 343 LVSWNVMISVY 353
V+W MIS Y
Sbjct: 279 AVAWTAMISGY 289
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 96/189 (50%), Gaps = 21/189 (11%)
Query: 187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----------IHLSTACG 236
M+M+ T ++ N+++ +L +C + KLG+ +H V++ H CG
Sbjct: 1 MDMLATGIEGNSLTFVCLLKSCGERCDAKLGQQVHCCVVKGGWSNVIVDSAVAHFYAQCG 60
Query: 237 FVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296
V + +VF+++++RDVV W ++I+A+V+ G AL + ++ +PN T+ S L
Sbjct: 61 DVAAASTVFDRMASRDVVSWTTMITAYVQHGHGDKALQMFPKMVSEGFRPNEFTVCSALK 120
Query: 297 ACLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
AC + AL G V +AL+ MY RCG + ++ +F MP +N ++
Sbjct: 121 ACAEEKALRFGKQLHGAIVKRLYKYDIHVGSALVTMYARCGEVFDAQAVFDKMPRRNTIT 180
Query: 346 WNVMISVYG 354
W MIS Y
Sbjct: 181 WTSMISGYA 189
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 119/278 (42%), Gaps = 43/278 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WTSM+ Y G EE V LF M + V +H + AC ++ +GK+++ +
Sbjct: 180 TWTSMISGYAQSGCGEEAVLLFRKMKMRRVFVNHLTVVGLLSACGSMQSIYLGKELHAQI 239
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I C M+Q+ + ++L+ FY++C +
Sbjct: 240 IK------------------NC------------MEQNLQIGSTLVWFYSRCGEHTYAAR 269
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+ +D V+W AM++GY G E LDEM + + PNT + S L ACA++
Sbjct: 270 ILEAMPDRDAVAWTAMISGYNNLGHNVEALKSLDEM--LWDGVAPNTYTYSSALKACARL 327
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ ++ G+ IHG V + I + CG V + VF+ + ++V W +I
Sbjct: 328 EALRDGRRIHGVVNKTQAFSNVFVGCSLIDMYMRCGKVDEARRVFDAMPEHNLVTWKVMI 387
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ F ++ +AL + + + + +VL +C
Sbjct: 388 TGFTQNCLCEEALKYMYLMQQDGYDVDDFVLSTVLSSC 425
>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 813
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 172/345 (49%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ ++ G Y + +++F LMID+G+RP+ + EL +++G +V+ +
Sbjct: 309 SWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGMEVHGFS 368
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + E D ++NSLID YAK +++
Sbjct: 369 LKMAIE------------------------------SDVFISNSLIDMYAKSGSSRIAST 398
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+K+ +++VSWNAM+A +A E L+ +M+ PN ++ + VL ACA++
Sbjct: 399 IFNKMGVRNIVSWNAMIANFARNRLEYEAVELVRQMQ--AKGETPNNVTFTNVLPACARL 456
Query: 212 KGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSII 260
+ +GK IH ++R L + CG + + +VFN +S RD V +N +I
Sbjct: 457 GFLNVGKEIHARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQNVFN-ISVRDEVSYNILI 515
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
+ R+ +++L L ++ + ++P+ V+ + V+ AC LA + QG
Sbjct: 516 IGYSRTNDSLESLRLFSEMRLLGMRPDIVSFMGVVSACANLAFIRQGKEIHGLLVRKLFH 575
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
T FV N+L+D+Y RCG I + K+F + +K++ SWN MI YG
Sbjct: 576 THLFVANSLLDLYTRCGRIDLATKVFYCIQNKDVASWNTMILGYG 620
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 100/358 (27%), Positives = 169/358 (47%), Gaps = 64/358 (17%)
Query: 20 AFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK 79
AFL + L+ S+ G+++ G Y M+ GV+PD P V K CS+
Sbjct: 103 AFLWNTLIRA----NSIAGVFDGFGTYNT-------MVRAGVKPDECTYPFVLKVCSDFV 151
Query: 80 DYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDF 139
+ R G++V+ + F+G D V N+L+ F
Sbjct: 152 EVRKGREVHGVAFKLGFDG------------------------------DVFVGNTLLAF 181
Query: 140 YAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI 199
Y C + F ++ ++D VSWN ++ +L GF EE M + +QP+ +
Sbjct: 182 YGNCGLFGDAMKVFDEMPERDKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQPDLV 241
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYVLR-----HHIHLSTA-------CGFVICSCSVFNQ 247
++ VL CA+ + + + +H Y L+ H+ + A CG S VF++
Sbjct: 242 TVVSVLPVCAETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDE 301
Query: 248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA----- 302
+ R+V+ WN+II++F G+ +DALD+ R +I ++PN+VTI S+LP +L
Sbjct: 302 IDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLG 361
Query: 303 ------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+L + + F+ N+LIDMY + G+ + + IF M +N+VSWN MI+ +
Sbjct: 362 MEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFA 419
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 105/396 (26%), Positives = 186/396 (46%), Gaps = 79/396 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G +VH G + F+G+ LL + N W +++G+ ++
Sbjct: 156 GREVHGVAFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEMPERDKVSWNTVIGLCSL 215
Query: 43 LGYYEEIVNLFYLMI--DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G+YEE + F +M+ G++PD V C+E +D + + V+ Y + +
Sbjct: 216 HGFYEEALGFFRVMVAAKPGIQPDLVTVVSVLPVCAETEDKVMARIVHCYALKVG----- 270
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
LL +K G N+L+D Y KC K S F +I +++
Sbjct: 271 -----LLGGHVKVG-------------------NALVDVYGKCGSEKASKKVFDEIDERN 306
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEME-MIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
++SWNA++ ++ FR + + LD MI M+PN++++S +L ++ KLG
Sbjct: 307 VISWNAIITSFS---FRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGME 363
Query: 220 IHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+HG+ L+ I + G + ++FN++ R++V WN++I+ F R+
Sbjct: 364 VHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFARNRL 423
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGS----FVWNA 317
+A++L+R + PN VT +VLPAC +L L G + GS FV NA
Sbjct: 424 EYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKEIHARIIRVGSSLDLFVSNA 483
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L DMY +CG + ++ +F + ++ VS+N++I Y
Sbjct: 484 LTDMYSKCGCLNLAQNVFNISV-RDEVSYNILIIGY 518
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 89/397 (22%), Positives = 169/397 (42%), Gaps = 85/397 (21%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
+LG++VH + +E F+ + L++++ +W +M+ +
Sbjct: 359 KLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANF 418
Query: 41 --NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
N L Y E V L M KG P++ V AC+ L VGK+++ +I +
Sbjct: 419 ARNRLEY--EAVELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKEIHARIIRVGSSL 476
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
+ V L D++ KCG + + +F I
Sbjct: 477 DLFVSNALTDMYSKCGCLNLAQNVF-------------------------------NISV 505
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+D VS+N ++ GY+ E L EM ++ M+P+ +S GV++ACA + ++ GK
Sbjct: 506 RDEVSYNILIIGYSRTNDSLESLRLFSEMRLL--GMRPDIVSFMGVVSACANLAFIRQGK 563
Query: 219 AIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
IHG ++R H L T CG + + VF + +DV WN++I + G
Sbjct: 564 EIHGLLVRKLFHTHLFVANSLLDLYTRCGRIDLATKVFYCIQNKDVASWNTMILGYGMRG 623
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWN 316
++ A++L + V+ ++V+ V+VL AC + +G + +
Sbjct: 624 ELDTAINLFEAMKEDGVEYDSVSFVAVLSACSHGGLIEKGRKYFKMMCDLNIEPTHTHYA 683
Query: 317 ALIDMYGRCGAIQKSRKI---FVLMPHKNLVSWNVMI 350
++D+ GR G ++++ + ++P N+ W ++
Sbjct: 684 CMVDLLGRAGLMEEAADLIRGLSIIPDTNI--WGALL 718
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 75/186 (40%), Gaps = 28/186 (15%)
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLS 249
+QT PN + L + +Q K V +HG++ R + C +I + F S
Sbjct: 32 LQTSNPPNLLQLCTLCDTLSQTKQVHAYSLLHGFLPRS----VSLCASLILQYASFGHPS 87
Query: 250 ------------TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+R +WN++I A +G V D ++ A VKP+ T VL
Sbjct: 88 NSLLLFQHSVAYSRSAFLWNTLIRANSIAG-VFDGFGTYNTMVRAGVKPDECTYPFVLKV 146
Query: 298 CLKL-----------AALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
C A G FV N L+ YG CG + K+F MP ++ VSW
Sbjct: 147 CSDFVEVRKGREVHGVAFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEMPERDKVSW 206
Query: 347 NVMISV 352
N +I +
Sbjct: 207 NTVIGL 212
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 102/238 (42%), Gaps = 52/238 (21%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF--CNWTSMMG-----------MYNVL--GY 45
+ +G ++HA +I G L F+ + L +++ C ++ YN+L GY
Sbjct: 459 LNVGKEIHARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQNVFNISVRDEVSYNILIIGY 518
Query: 46 YE-----EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
E + LF M G+RPD V AC+ L R GK+++ ++ F +
Sbjct: 519 SRTNDSLESLRLFSEMRLLGMRPDIVSFMGVVSACANLAFIRQGKEIHGLLVRKLFHTH- 577
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
V NSL+D Y +C + ++ F I+ KD
Sbjct: 578 -----------------------------LFVANSLLDLYTRCGRIDLATKVFYCIQNKD 608
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+ SWN M+ GY + G + NL + M+ + ++ +++S VL+AC+ ++ G+
Sbjct: 609 VASWNTMILGYGMRGELDTAINLFEAMK--EDGVEYDSVSFVAVLSACSHGGLIEKGR 664
>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 705
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 98/341 (28%), Positives = 167/341 (48%), Gaps = 54/341 (15%)
Query: 36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIK 95
M+G + +G Y F +I G RPD++ P V +AC +LK+ ++G+ ++ I K
Sbjct: 1 MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHH--IVYK 58
Query: 96 FEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSK 155
F +D D V +L+D Y KCR ++ + F K
Sbjct: 59 FG----------------------------LDLDHFVCAALVDMYVKCREIEDARFLFDK 90
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
++++DLV+W M+ GYA G E L ++M + + P+ +++ V+ ACA++ +
Sbjct: 91 MQERDLVTWTVMIGGYAECGKANESLVLFEKMR--EEGVVPDKVAMVTVVFACAKLGAMH 148
Query: 216 LGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
+ I Y+ R L CG V + +F+++ ++V+ W+++I+A+
Sbjct: 149 KARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYG 208
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSF 313
GQ ALDL R ++ + + P+ +T+ S+L AC L L GL F
Sbjct: 209 YHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHF 268
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V AL+DMYG+C I+ +R +F MP ++LV+W VMI Y
Sbjct: 269 VCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYA 309
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/362 (26%), Positives = 171/362 (47%), Gaps = 55/362 (15%)
Query: 16 VELCAFLGSQLLEV-FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKA 74
+E FL ++ E WT M+G Y G E + LF M ++GV PD V A
Sbjct: 81 IEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFA 140
Query: 75 CSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNN 134
C++L + + DY+ KF+ D ++
Sbjct: 141 CAKLGAMHKARIIDDYIQRKKFQ------------------------------LDVILGT 170
Query: 135 SLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDM 194
++ID YAKC ++ + F ++++K+++SW+AM+A Y G + +L M+ + M
Sbjct: 171 AMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLF--RMMLSSGM 228
Query: 195 QPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCS 243
P+ I+L+ +L AC+ +K +++G+ IH V + + L C + +
Sbjct: 229 LPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARF 288
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
+F+++ RD+V W +I + G ++L L + V P+ V +V+V+ AC KL A
Sbjct: 289 LFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGA 348
Query: 304 LPQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+ + ++ A+IDM+ +CG ++ +R+IF M KN++SW+ MI+
Sbjct: 349 MHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAA 408
Query: 353 YG 354
YG
Sbjct: 409 YG 410
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 156/330 (47%), Gaps = 55/330 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W++M+ Y G + ++LF +M+ G+ PD + ACS+LK+ ++G+ ++
Sbjct: 199 SWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHH-- 256
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I KF +D D V +L+D Y KCR ++ +
Sbjct: 257 IVYKFG----------------------------LDLDHFVCAALVDMYGKCREIEDARF 288
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K+ ++DLV+W M+ GYA G E L D+M + + P+ +++ V+ ACA++
Sbjct: 289 LFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMR--EEGVVPDKVAMVTVVFACAKL 346
Query: 212 KGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSII 260
+ + I Y+ R L CG V + +F+++ ++V+ W+++I
Sbjct: 347 GAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMI 406
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW----- 315
+A+ GQ ALDL ++ + + PN +T+VS+L AC + +GL S +W
Sbjct: 407 AAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSV 466
Query: 316 -------NALIDMYGRCGAIQKSRKIFVLM 338
++D+ GR G + ++ K+ M
Sbjct: 467 RADVKHYTCVVDLLGRAGRLDEALKLIESM 496
>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 599
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 163/313 (52%), Gaps = 53/313 (16%)
Query: 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLF 123
D + P V+KAC+ GK+V+ ++ I +E LD F++
Sbjct: 104 DKYTYPFVFKACASQFAVEKGKEVHGVIVRIGYE---------LDGFLQ----------- 143
Query: 124 EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNL 183
+SL++FY C + + F + KD+V WNA++ GYA G + +
Sbjct: 144 ----------SSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGV 193
Query: 184 LDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY-----VLRHHIHLSTA---- 234
EM ++ +++PN ++ G++ AC + K +KLG+AIHGY VLR + L A
Sbjct: 194 FKEMVEVK-EVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALINL 252
Query: 235 ---CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI 291
CG++ + +F+++ ++ VVWNS+I + + G + + ++LLR++ ++N+KP+ T+
Sbjct: 253 YVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTV 312
Query: 292 VSVLPACLKLAALPQGLGTGSF-----VWN-----ALIDMYGRCGAIQKSRKIFVLMPHK 341
VL AC ++ A G F +W+ ALIDMY +CG I +RK+F M +
Sbjct: 313 SGVLSACAQMGAFNLGNWVHRFAEKKGIWDVFIGTALIDMYAKCGFIGAARKVFDQMNER 372
Query: 342 NLVSWNVMISVYG 354
N+ +WN ++S Y
Sbjct: 373 NVATWNAILSGYA 385
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 100/396 (25%), Positives = 183/396 (46%), Gaps = 76/396 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF--CN-------------------WTSMMGM 39
+E G +VH ++ G EL FL S LL + C W +++
Sbjct: 121 VEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITG 180
Query: 40 YNVLGYYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
Y G + +F M++ K VRP+ + AC E K+ ++G+ ++ YM+
Sbjct: 181 YARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMK----- 235
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
D+ ++ G + +LI+ Y KC YL + F +I +
Sbjct: 236 ---------DMVLREG---------------VKLEAALINLYVKCGYLDGARKLFDEIPE 271
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
K+ V WN+++ GY G EV LL EM + ++++P+ ++SGVL+ACAQ+ LG
Sbjct: 272 KNTVVWNSLICGYCQIGSLNEVIELLREMHL--SNLKPDRFTVSGVLSACAQMGAFNLGN 329
Query: 219 AIHGYVLRHHI----------HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H + + I + CGF+ + VF+Q++ R+V WN+I+S + GQ
Sbjct: 330 WVHRFAEKKGIWDVFIGTALIDMYAKCGFIGAARKVFDQMNERNVATWNAILSGYASHGQ 389
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WN 316
A++L ++ + +P+++T ++VL AC + G + +
Sbjct: 390 AESAIELFSEMRESGARPDSITFLAVLHACAHSGLVENGKQYFDLMLQYYKIPPRVEHYG 449
Query: 317 ALIDMYGRCGAIQKSRKIFVLM-PHKNLVSWNVMIS 351
++D+ GR G +Q++R++ +M N+V W ++S
Sbjct: 450 CMVDLLGRAGLLQEARELIKMMVVEPNVVVWGALLS 485
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/308 (20%), Positives = 135/308 (43%), Gaps = 52/308 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ Y +G E++ L M ++PD F V AC+++ + +G V+ +
Sbjct: 277 WNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQMGAFNLGNWVHRFA- 335
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHC 151
K + + L+D++ KCG + +F++M++ + N+++ YA + +
Sbjct: 336 EKKGIWDVFIGTALIDMYAKCGFIGAARKVFDQMNERNVATWNAILSGYASHGQAESAIE 395
Query: 152 KFSKIKQK----DLVSWNAMLAGYALGGFREEVTNLLDEM-------------------- 187
FS++++ D +++ A+L A G E D M
Sbjct: 396 LFSEMRESGARPDSITFLAVLHACAHSGLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLL 455
Query: 188 ----------EMIQTDM-QPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACG 236
E+I+ + +PN + +L+AC+ +++G+ + H I L+ G
Sbjct: 456 GRAGLLQEARELIKMMVVEPNVVVWGALLSACSIHGNIEIGE----WAAHHMIKLNAMDG 511
Query: 237 --FVI-----CSCSVFNQL-STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN-VKPN 287
+VI S FN++ + R+++V I + +++ D++ + +VA+ + P
Sbjct: 512 GSYVILANLYASAQRFNRVKAVREMMVEKGICKS--HGCSMIEIGDVVHEFVVADKMHPR 569
Query: 288 TVTIVSVL 295
+ I SVL
Sbjct: 570 SEEIYSVL 577
>gi|328774747|gb|AEB39773.1| pentatricopeptide repeat protein 43 [Funaria hygrometrica]
Length = 1073
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 162/322 (50%), Gaps = 54/322 (16%)
Query: 55 LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG 114
L+ +GV+ + + + C K GK V+D+M S +F +P
Sbjct: 90 LLGKRGVQANLNFYARRLQQCVLAKSLAEGKKVHDHMRSAQF-------KP--------- 133
Query: 115 RMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALG 174
D +NN LI Y+KC ++ ++ F ++ KD+VSWNAM++GYAL
Sbjct: 134 --------------DIYLNNMLISMYSKCGSIEDANNVFQAMEDKDVVSWNAMISGYALH 179
Query: 175 GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HHIH 230
G +E +L +M+ + ++PN + +L+AC ++ G+ IH + + ++
Sbjct: 180 GRDQEAADLFYQMQ--REGLKPNQNTFISILSACQSPIALEFGEQIHSRIAKAGYESDVN 237
Query: 231 LSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283
+STA CG + + VFN++ R+VV W ++IS +V+ G +AL L R +I +
Sbjct: 238 VSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSREALALFRKLIRSG 297
Query: 284 VKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSR 332
++PN V+ S+L AC L +GL ++ V NALI MY RCG++ +R
Sbjct: 298 IQPNKVSFASILGACTNPNDLGEGLKLHAYIKQAGLEQEVLVGNALISMYSRCGSLANAR 357
Query: 333 KIFVLMPHKNLVSWNVMISVYG 354
++F + N +WN MI+ YG
Sbjct: 358 QVFDNLRSLNRTTWNAMIAGYG 379
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 102/395 (25%), Positives = 173/395 (43%), Gaps = 76/395 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q+H+ + G E + + L+ ++C +WT+M+
Sbjct: 217 LEFGEQIHSRIAKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISG 276
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G E + LF +I G++P+ + AC+ D G ++ Y IK G
Sbjct: 277 YVQHGDSREALALFRKLIRSGIQPNKVSFASILGACTNPNDLGEGLKLHAY---IKQAG- 332
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
++Q+ LV N+LI Y++C L + F ++
Sbjct: 333 --------------------------LEQEVLVGNALISMYSRCGSLANARQVFDNLRSL 366
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+ +WNAM+AGY G EE L ME Q QP+ + + +LA CA + GK
Sbjct: 367 NRTTWNAMIAGYG-EGLMEEAFRLFRAME--QKGFQPDKFTYASLLAICADRADLDRGKE 423
Query: 220 IHGYVL----RHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H + + + ++TA CG + VFNQ+ R+V+ WN+ IS R
Sbjct: 424 LHSQIASTGWQTDLTVATALISMYAKCGSPEEARKVFNQMPERNVISWNAFISCCCRHDL 483
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNA 317
+A + + +V P+ +T +++L +C L +G + + + V NA
Sbjct: 484 GKEAFQAFKQMRRDDVNPDHITFITLLNSCTSPEDLERGRYIHGKINQWGMLSNNHVANA 543
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
LI MYGRCG + +R++F + ++L SWN MI+
Sbjct: 544 LISMYGRCGNLADAREVFYRIRRRDLGSWNAMIAA 578
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 157/342 (45%), Gaps = 55/342 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y + G +E +LFY M +G++P+ + AC G+ ++ +
Sbjct: 168 SWNAMISGYALHGRDQEAADLFYQMQREGLKPNQNTFISILSACQSPIALEFGEQIHSRI 227
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+E D V+ +LI+ Y KC L+++
Sbjct: 228 AKAGYES------------------------------DVNVSTALINMYCKCGSLELARK 257
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F++++++++VSW AM++GY G E L ++I++ +QPN +S + +L AC
Sbjct: 258 VFNEMRERNVVSWTAMISGYVQHGDSREALALF--RKLIRSGIQPNKVSFASILGACTNP 315
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ G +H Y+ + I + + CG + + VF+ L + + WN++I
Sbjct: 316 NDLGEGLKLHAYIKQAGLEQEVLVGNALISMYSRCGSLANARQVFDNLRSLNRTTWNAMI 375
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
+ + G + +A L R + +P+ T S+L C A L +G
Sbjct: 376 AGYG-EGLMEEAFRLFRAMEQKGFQPDKFTYASLLAICADRADLDRGKELHSQIASTGWQ 434
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
T V ALI MY +CG+ +++RK+F MP +N++SWN IS
Sbjct: 435 TDLTVATALISMYAKCGSPEEARKVFNQMPERNVISWNAFIS 476
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 94/394 (23%), Positives = 169/394 (42%), Gaps = 76/394 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLL-------------EVFCN--------WTSMMGMYNV 42
G+++HA++ G+E +G+ L+ +VF N W +M+ Y
Sbjct: 321 GLKLHAYIKQAGLEQEVLVGNALISMYSRCGSLANARQVFDNLRSLNRTTWNAMIAGYGE 380
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G EE LF M KG +PD F + C++ D GK+++ + S ++
Sbjct: 381 -GLMEEAFRLFRAMEQKGFQPDKFTYASLLAICADRADLDRGKELHSQIASTGWQ----- 434
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
D V +LI YAKC + + F+++ +++++
Sbjct: 435 -------------------------TDLTVATALISMYAKCGSPEEARKVFNQMPERNVI 469
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SWNA ++ +E +M + D+ P+ I+ +L +C + ++ G+ IHG
Sbjct: 470 SWNAFISCCCRHDLGKEAFQAFKQMR--RDDVNPDHITFITLLNSCTSPEDLERGRYIHG 527
Query: 223 YV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+ + + H++ A CG + + VF ++ RD+ WN++I+A V+ G
Sbjct: 528 KINQWGMLSNNHVANALISMYGRCGNLADAREVFYRIRRRDLGSWNAMIAANVQHGANGS 587
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALID 320
A DL R K + T ++VL A L L G G V LI
Sbjct: 588 AFDLFRKYRSEGGKGDKYTFINVLRAVANLEDLDAGRMIHGLVEKGGFGKDIRVLTTLIK 647
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
MY +CG+++ + +F + K++V WN M++ Y
Sbjct: 648 MYSKCGSLRDAENVFSTVQEKDVVCWNAMLAAYA 681
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/353 (25%), Positives = 163/353 (46%), Gaps = 45/353 (12%)
Query: 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRP---------DHFVCPKVYKACSELKDYRVG 84
T+++ MY G EE +F M ++ V H + + ++A +++ V
Sbjct: 441 TALISMYAKCGSPEEARKVFNQMPERNVISWNAFISCCCRHDLGKEAFQAFKQMRRDDVN 500
Query: 85 KDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEE--MDQDFLVNNSLIDFYAK 142
D ++ + N+C L+ R G + M + V N+LI Y +
Sbjct: 501 PDHITFITLL----NSCTSPEDLE------RGRYIHGKINQWGMLSNNHVANALISMYGR 550
Query: 143 CRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLS 202
C L + F +I+++DL SWNAM+A G +L + + + +
Sbjct: 551 CGNLADAREVFYRIRRRDLGSWNAMIAANVQHGANGSAFDLFRKYR--SEGGKGDKYTFI 608
Query: 203 GVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTR 251
VL A A ++ + G+ IHG VL I + + CG + + +VF+ + +
Sbjct: 609 NVLRAVANLEDLDAGRMIHGLVEKGGFGKDIRVLTTLIKMYSKCGSLRDAENVFSTVQEK 668
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ----- 306
DVV WN++++A+ S + DAL L + + + V P++ T + L AC +L A+
Sbjct: 669 DVVCWNAMLAAYAHSDRGQDALKLFQQMQLEGVNPDSSTYSTALNACARLTAVEHGKKIH 728
Query: 307 ------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G+ T + V N+LI+MY RCG + ++++F M +++ SWN +I+ Y
Sbjct: 729 AQLKEAGMETDTRVSNSLIEMYSRCGCLCSAKQVFEKMLSRDINSWNALIAGY 781
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 129/290 (44%), Gaps = 47/290 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ G +LF +G + D + V +A + L+D G+ ++
Sbjct: 571 SWNAMIAANVQHGANGSAFDLFRKYRSEGGKGDKYTFINVLRAVANLEDLDAGRMIH--- 627
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEE--MDQDFLVNNSLIDFYAKCRYLKVS 149
GL E+ +D V +LI Y+KC L+ +
Sbjct: 628 -----------------------------GLVEKGGFGKDIRVLTTLIKMYSKCGSLRDA 658
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
FS +++KD+V WNAMLA YA ++ L +M++ + P++ + S L ACA
Sbjct: 659 ENVFSTVQEKDVVCWNAMLAAYAHSDRGQDALKLFQQMQL--EGVNPDSSTYSTALNACA 716
Query: 210 QVKGVKLGKAIHGY-----------VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
++ V+ GK IH V I + + CG + + VF ++ +RD+ WN+
Sbjct: 717 RLTAVEHGKKIHAQLKEAGMETDTRVSNSLIEMYSRCGCLCSAKQVFEKMLSRDINSWNA 776
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
+I+ + ++GQ AL+ ++ A++ PN T S+L + +L Q
Sbjct: 777 LIAGYCQNGQGNIALEYYELMLRASIVPNKATFTSILSSYAQLGEEEQAF 826
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 80/192 (41%), Gaps = 35/192 (18%)
Query: 21 FLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD 80
F Q +V C W +M+ Y ++ + LF M +GV PD AC+ L
Sbjct: 662 FSTVQEKDVVC-WNAMLAAYAHSDRGQDALKLFQQMQLEGVNPDSSTYSTALNACARLTA 720
Query: 81 YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFY 140
GK ++ + E + V L++++ +CG +
Sbjct: 721 VEHGKKIHAQLKEAGMETDTRVSNSLIEMYSRCGCL------------------------ 756
Query: 141 AKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME-MIQTDMQPNTI 199
C +V F K+ +D+ SWNA++AGY G + L+ E M++ + PN
Sbjct: 757 --CSAKQV----FEKMLSRDINSWNALIAGYCQNG---QGNIALEYYELMLRASIVPNKA 807
Query: 200 SLSGVLAACAQV 211
+ + +L++ AQ+
Sbjct: 808 TFTSILSSYAQL 819
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 94/332 (28%), Positives = 166/332 (50%), Gaps = 25/332 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ + G ++ + LF M + V+ H V AC+++++ G+ V Y+
Sbjct: 199 SWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYI 258
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSH 150
+ N + +LD++ KCG +E LF+ M++ D + +++D YA + +
Sbjct: 259 EENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAR 318
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+ + QKD+V+WNA+++ Y G E + E+++ Q +M+ N I+L L+ACAQ
Sbjct: 319 EVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQL-QKNMKLNQITLVSTLSACAQ 377
Query: 211 VKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
V ++LG+ IH Y+ +H I H+ + CG + S VFN + RDV VW+++
Sbjct: 378 VGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAM 437
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------G 307
I G +A+D+ + ANVKPN VT +V AC + + G
Sbjct: 438 IGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYG 497
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+ + ++D+ GR G ++K+ K MP
Sbjct: 498 IVPEEKHYACIVDVLGRSGYLEKAVKFIEAMP 529
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 141/277 (50%), Gaps = 58/277 (20%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCK-FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
D V NSLI Y C L S CK F+ IK+KD+VSWN+M+ G+ G ++ L +M
Sbjct: 165 DVFVANSLIHCYFSCGDLD-SACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKM 223
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS-----------TACG 236
E D++ + +++ GVL+ACA+++ ++ G+ + Y+ + ++++ T CG
Sbjct: 224 E--SEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCG 281
Query: 237 FV-------------------------------ICSCSVFNQLSTRDVVVWNSIISAFVR 265
+ + V N + +D+V WN++ISA+ +
Sbjct: 282 SIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQ 341
Query: 266 SGQVVDALDLLRDV-IVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF----------- 313
+G+ +AL + ++ + N+K N +T+VS L AC ++ AL G S+
Sbjct: 342 NGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFH 401
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
V +ALI MY +CG ++KSR++F + +++ W+ MI
Sbjct: 402 VTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMI 438
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 119/225 (52%), Gaps = 25/225 (11%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI-QTDMQPNTISLSGVLAACAQV 211
F +I + + +WN ++ YA G + V ++ ++M+ ++ PN + ++ A A+V
Sbjct: 87 FDEIPKPNSFAWNTLIRAYASGP--DPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEV 144
Query: 212 KGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ LG+++HG +V IH +CG + +C VF + +DVV WNS+I
Sbjct: 145 SSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMI 204
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW----- 315
+ FV+ G AL+L + + +VK + VT+V VL AC K+ L G S++
Sbjct: 205 NGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVN 264
Query: 316 ------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
NA++DMY +CG+I+ ++++F M K+ V+W M+ Y
Sbjct: 265 VNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYA 309
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 12/122 (9%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV-ANVKPNTVTIVSVLPACLKLA 302
VF+++ + WN++I A+ V ++ D++ + PN T ++ A +++
Sbjct: 86 VFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVS 145
Query: 303 ALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+L G +G+ FV N+LI Y CG + + K+F + K++VSWN MI+
Sbjct: 146 SLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMIN 205
Query: 352 VY 353
+
Sbjct: 206 GF 207
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/398 (25%), Positives = 183/398 (45%), Gaps = 77/398 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLL-------------EVF--------CNWTSMMGM 39
+E G +VHA + G + ++G+ +L EVF +WT+M+
Sbjct: 328 LEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAG 387
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ G +E F MI+ G+ P+ + ACS + G+ + D++I +
Sbjct: 388 FAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGY--- 444
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D V +L+ YAKC LK +H F KI ++
Sbjct: 445 ---------------------------GSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQ 477
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEME-MIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
++V+WNAM+ Y E+ N L + +++ ++PN+ + + +L C ++LGK
Sbjct: 478 NVVAWNAMITAYVQ---HEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGK 534
Query: 219 AIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
+H +++ +H+S A CG ++ + ++FN + RD+V WN+II+ FV+ G
Sbjct: 535 WVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHG 594
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA---------- 317
+ A D + + + +KP+ +T +L AC AL +G + + A
Sbjct: 595 KNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGT 654
Query: 318 -LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
LI MY +CG+I+ + ++F +P KN+ SW MI+ Y
Sbjct: 655 GLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYA 692
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 163/344 (47%), Gaps = 54/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W ++G Y G YEE L M+ V+PD + AC++ ++ G+++Y+
Sbjct: 178 SWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYN-- 235
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
L +K G D D V +LI+ + KC + +
Sbjct: 236 -----------------LILKAG-----------WDTDLFVGTALINMHIKCGDIGDATK 267
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +DLV+W +M+ G A G ++ NL ME + +QP+ ++ +L AC
Sbjct: 268 VFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRME--EEGVQPDKVAFVSLLRACNHP 325
Query: 212 KGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ ++ GK +H YV + + T CG + + VF+ + R+VV W ++I
Sbjct: 326 EALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMI 385
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLG 309
+ F + G++ +A +I + ++PN VT +S+L AC +AL + G G
Sbjct: 386 AGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYG 445
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ V AL+ MY +CG+++ + ++F + +N+V+WN MI+ Y
Sbjct: 446 SDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAY 489
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 128/248 (51%), Gaps = 24/248 (9%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D + N+LI+ YAKC + F +++KD+ SWN +L GY G EE L ++M
Sbjct: 144 DIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQM- 202
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGF 237
+Q ++P+ + +L ACA + V G+ ++ +L+ I++ CG
Sbjct: 203 -VQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGD 261
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ + VF+ L TRD+V W S+I+ R G+ A +L + + V+P+ V VS+L A
Sbjct: 262 IGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRA 321
Query: 298 CLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
C AL Q G T +V A++ MY +CG+++ + ++F L+ +N+VSW
Sbjct: 322 CNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSW 381
Query: 347 NVMISVYG 354
MI+ +
Sbjct: 382 TAMIAGFA 389
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/329 (22%), Positives = 147/329 (44%), Gaps = 56/329 (17%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y Y+ + F ++ +G++P+ + C +GK V+
Sbjct: 482 WNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHF--- 538
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
L +K G ++ D V+N+L+ + C L +
Sbjct: 539 ----------------LIMKAG-----------LESDLHVSNALVSMFVNCGDLMSAKNL 571
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ-TDMQPNTISLSGVLAACAQV 211
F+ + ++DLVSWN ++AG+ G + +V D +M+Q + ++P+ I+ +G+L ACA
Sbjct: 572 FNDMPKRDLVSWNTIIAGFVQHG-KNQVA--FDYFKMMQESGIKPDKITFTGLLNACASP 628
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ + G+ +H + I + T CG + + VF++L ++V W S+I
Sbjct: 629 EALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMI 688
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
+ + + G+ +AL+L + VKP+ +T V L AC + +GL +
Sbjct: 689 TGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFNIE 748
Query: 315 -----WNALIDMYGRCGAIQKSRKIFVLM 338
+ ++D++GR G + ++ + + M
Sbjct: 749 PRMEHYGCMVDLFGRAGLLNEAVEFIIKM 777
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/319 (20%), Positives = 130/319 (40%), Gaps = 76/319 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+ELG VH ++ G+E + + L+ +F N W +++
Sbjct: 530 LELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAG 589
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ G + + F +M + G++PD + AC+ + G+ ++ + F+ +
Sbjct: 590 FVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCD 649
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V L+ ++ KCG +E +H F K+ +K
Sbjct: 650 VLVGTGLISMYTKCGSIED------------------------------AHQVFHKLPKK 679
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
++ SW +M+ GYA G +E L +M+ Q ++P+ I+ G L+ACA ++ G
Sbjct: 680 NVYSWTSMITGYAQHGRGKEALELFYQMQ--QEGVKPDWITFVGALSACAHAGLIEEG-- 735
Query: 220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
HH S FN + R + + ++ F R+G + +A++ +
Sbjct: 736 ------LHHFQ----------SMKEFN-IEPR-MEHYGCMVDLFGRAGLLNEAVEF---I 774
Query: 280 IVANVKPNTVTIVSVLPAC 298
I V+P++ ++L AC
Sbjct: 775 IKMQVEPDSRVWGALLGAC 793
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 63/123 (51%), Gaps = 13/123 (10%)
Query: 242 CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
C VF + +D N++++ ++GQ +A+ +L V ++++ T ++L C+K
Sbjct: 66 CVVFADI--KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKF 123
Query: 302 AAL-----------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
L G+ F+WN LI+MY +CG +++IF M K++ SWN+++
Sbjct: 124 KNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLL 183
Query: 351 SVY 353
Y
Sbjct: 184 GGY 186
>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
Length = 644
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 100/342 (29%), Positives = 174/342 (50%), Gaps = 28/342 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ Y + +E + FY M D G++P+HF + AC++L+ V + +D +
Sbjct: 133 SWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACTDLE---VLGEFHDEI 189
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSH 150
+ FE N V L+D++ K G +E LF++M Q +V+ N++I Y + ++ +
Sbjct: 190 VKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDAL 249
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F +I ++D+++WN M+AGYA G E L ++M + N +S + ++A Q
Sbjct: 250 KLFQEIPKRDVITWNTMMAGYAQCGDVENAVELFEKMP------EQNLVSWNTMIAGYVQ 303
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNSIISAF 263
VK + + ++ A G V + +F + +VV WN++I+ +
Sbjct: 304 NGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGY 363
Query: 264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGS 312
++GQ +AL L + + ++KPNT T VLPAC LA L Q G +
Sbjct: 364 SQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDV 423
Query: 313 FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V N L+ MY +CG+I+ +RK+F M ++ S + MI Y
Sbjct: 424 LVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYA 465
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 137/318 (43%), Gaps = 67/318 (21%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G E +++ M++ G+ P + + C K K ++ +MI +FE
Sbjct: 43 GRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQFE------ 96
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
C QD + N L+ Y K L + F ++ K++VS
Sbjct: 97 ---------C--------------QDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVS 133
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA--QVKG------VK 215
W AM+A YA +E EM+ + +QPN + + +L AC +V G VK
Sbjct: 134 WTAMIAAYARHEHGQEALGFFYEMQDV--GIQPNHFTFASILPACTDLEVLGEFHDEIVK 191
Query: 216 LGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDL 275
G + +V + + G + + +F+++ RDVV WN++I+ +V++G + DAL L
Sbjct: 192 GGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKL 251
Query: 276 LRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIF 335
+++ +V WN ++ Y +CG ++ + ++F
Sbjct: 252 FQEIPKRDV----------------------------ITWNTMMAGYAQCGDVENAVELF 283
Query: 336 VLMPHKNLVSWNVMISVY 353
MP +NLVSWN MI+ Y
Sbjct: 284 EKMPEQNLVSWNTMIAGY 301
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 84/393 (21%), Positives = 175/393 (44%), Gaps = 56/393 (14%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNVLG 44
+ H ++ G E F+G+ L++++ +W +M+ Y G
Sbjct: 184 EFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNG 243
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
E+ + LF + + V + + Y C ++++ ++++ M E N
Sbjct: 244 LIEDALKLFQEIPKRDVITWNTMMAG-YAQCGDVEN---AVELFEKMP----EQNLVSWN 295
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
++ +++ G ++ LF+ M + +++ N++I +A+ ++ + F + + ++VS
Sbjct: 296 TMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVS 355
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
WNAM+AGY+ G E L +M+M+ DM+PNT + + VL ACA + ++ G H
Sbjct: 356 WNAMIAGYSQNGQAENALKLFGQMQMV--DMKPNTETFAIVLPACAALAVLEQGNEAHEV 413
Query: 224 VLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
V+R + CG + + VF+++ +D +++I + +G ++
Sbjct: 414 VIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKES 473
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNALID 320
L+L + +KP+ VT V VL AC + +G + + +ID
Sbjct: 474 LELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMID 533
Query: 321 MYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
+ GR G ++ + MP K + W ++S
Sbjct: 534 LLGRAGCFDEANDLINKMPIKPDADMWGSLLSA 566
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 20/114 (17%)
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP----------- 305
+ ++ + + G++ +AL +L+D++ + P++ T S+L CL +LP
Sbjct: 33 DGLVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQ 92
Query: 306 -----QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
Q + G N L+ +Y + G++ ++R++F MP KN+VSW MI+ Y
Sbjct: 93 TQFECQDISLG----NKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYA 142
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/398 (25%), Positives = 183/398 (45%), Gaps = 77/398 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLL-------------EVF--------CNWTSMMGM 39
+E G +VHA + G + ++G+ +L EVF +WT+M+
Sbjct: 328 LEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAG 387
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ G +E F MI+ G+ P+ + ACS + G+ + D++I +
Sbjct: 388 FAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGY--- 444
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D V +L+ YAKC LK +H F KI ++
Sbjct: 445 ---------------------------GSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQ 477
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEME-MIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
++V+WNAM+ Y E+ N L + +++ ++PN+ + + +L C ++LGK
Sbjct: 478 NVVAWNAMITAYVQ---HEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGK 534
Query: 219 AIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
+H +++ +H+S A CG ++ + ++FN + RD+V WN+II+ FV+ G
Sbjct: 535 WVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHG 594
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA---------- 317
+ A D + + + +KP+ +T +L AC AL +G + + A
Sbjct: 595 KNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGT 654
Query: 318 -LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
LI MY +CG+I+ + ++F +P KN+ SW MI+ Y
Sbjct: 655 GLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYA 692
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/393 (24%), Positives = 179/393 (45%), Gaps = 75/393 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G +++ H+ GV+ F+ + L+ ++ +W ++G Y
Sbjct: 129 GERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQ 188
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G YEE L M+ V+PD + AC++ ++ G+++Y+
Sbjct: 189 HGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYN------------- 235
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L +K G D D V +LI+ + KC + + F + +DLV
Sbjct: 236 ------LILKAG-----------WDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLV 278
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+W +M+ G A G ++ NL ME + +QP+ ++ +L AC + ++ GK +H
Sbjct: 279 TWTSMITGLARHGRFKQACNLFQRME--EEGVQPDKVAFVSLLRACNHPEALEQGKKVHA 336
Query: 223 -----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
YV + + T CG + + VF+ + R+VV W ++I+ F + G++ +
Sbjct: 337 RMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDE 396
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALID 320
A +I + ++PN VT +S+L AC +AL + G G+ V AL+
Sbjct: 397 AFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLS 456
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
MY +CG+++ + ++F + +N+V+WN MI+ Y
Sbjct: 457 MYAKCGSLKDAHRVFEKISKQNVVAWNAMITAY 489
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/329 (22%), Positives = 147/329 (44%), Gaps = 56/329 (17%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y Y+ + F ++ +G++P+ + C +GK V+
Sbjct: 482 WNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHF--- 538
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
L +K G ++ D V+N+L+ + C L +
Sbjct: 539 ----------------LIMKAG-----------LESDLHVSNALVSMFVNCGDLMSAKNL 571
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ-TDMQPNTISLSGVLAACAQV 211
F+ + ++DLVSWN ++AG+ G + +V D +M+Q + ++P+ I+ +G+L ACA
Sbjct: 572 FNDMPKRDLVSWNTIIAGFVQHG-KNQVA--FDYFKMMQESGIKPDKITFTGLLNACASP 628
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ + G+ +H + I + T CG + + VF++L ++V W S+I
Sbjct: 629 EALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMI 688
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
+ + + G+ +AL+L + VKP+ +T V L AC + +GL +
Sbjct: 689 AGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFNIE 748
Query: 315 -----WNALIDMYGRCGAIQKSRKIFVLM 338
+ ++D++GR G + ++ + + M
Sbjct: 749 PRMEHYGCMVDLFGRAGLLNEAVEFIIKM 777
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/319 (21%), Positives = 131/319 (41%), Gaps = 76/319 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+ELG VH ++ G+E + + L+ +F N W +++
Sbjct: 530 LELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAG 589
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ G + + F +M + G++PD + AC+ + G+ ++ + F+ +
Sbjct: 590 FVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCD 649
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V L+ ++ KCG +E +H F K+ +K
Sbjct: 650 VLVGTGLISMYTKCGSIED------------------------------AHQVFHKLPKK 679
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
++ SW +M+AGYA G +E L +M+ Q ++P+ I+ G L+ACA ++ G
Sbjct: 680 NVYSWTSMIAGYAQHGRGKEALELFYQMQ--QEGVKPDWITFVGALSACAHAGLIEEG-- 735
Query: 220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
HH S FN + R + + ++ F R+G + +A++ +
Sbjct: 736 ------LHHFQ----------SMKEFN-IEPR-MEHYGCMVDLFGRAGLLNEAVEF---I 774
Query: 280 IVANVKPNTVTIVSVLPAC 298
I V+P++ ++L AC
Sbjct: 775 IKMQVEPDSRVWGALLGAC 793
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 13/123 (10%)
Query: 242 CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
C VF + +D N++++ ++GQ +A+ +L V ++++ T ++L C+K
Sbjct: 66 CVVFADI--KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKF 123
Query: 302 AAL-----------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
L G+ F+ N LI+MY +CG +++IF M K++ SWN+++
Sbjct: 124 KNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLL 183
Query: 351 SVY 353
Y
Sbjct: 184 GGY 186
>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
Length = 814
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 98/361 (27%), Positives = 168/361 (46%), Gaps = 68/361 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W SM+ ++ + E + LM+ +GV+PD V ACS L R GK+++ Y
Sbjct: 183 TWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYA 242
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ +++ ++ V ++L+D Y C ++
Sbjct: 243 LRT-----------------------------DDVIENSFVGSALVDMYCNCGQVESGRL 273
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + + + WNAM+AGYA E+ L EME + N ++S ++ A +
Sbjct: 274 VFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEA-AAGLYSNATTMSSIVPAYVRC 332
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+G+ + IHGYV++ I + + G + S +F+ + RD+V WN+II
Sbjct: 333 EGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTII 392
Query: 261 SAFVRSGQVVDALDLLR----------------DVIVANVKPNTVTIVSVLPACLKLAAL 304
+++V G+ DAL LL D KPN++T+++VLP C L+AL
Sbjct: 393 TSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSAL 452
Query: 305 PQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+G L + V +AL+DMY +CG + +R++F MP +N+++WNV+I Y
Sbjct: 453 AKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAY 512
Query: 354 G 354
G
Sbjct: 513 G 513
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/324 (28%), Positives = 155/324 (47%), Gaps = 55/324 (16%)
Query: 56 MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR 115
MI G PD+F P V KA + +++ +GK ++ ++ +
Sbjct: 1 MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGY------------------- 41
Query: 116 MEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGG 175
G F + ++N+L++ Y KC L ++ F +I ++D VSWN++++ AL
Sbjct: 42 -----GSFSSV----TIDNTLVNMYGKCGGLGDAYKVFDRITERDQVSWNSIIS--ALCR 90
Query: 176 FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK---GVKLGKAIHGYVLRHH---- 228
F E + M+ +P++ +L + AC+ ++ G+ LGK IHG R
Sbjct: 91 FEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKGHWRT 150
Query: 229 ------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
+ + G + + S+ RD+V WNS+IS+F ++ + ++AL LR +++
Sbjct: 151 FSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLE 210
Query: 283 NVKPNTVTIVSVLPACLKLAALPQG-------LGT-----GSFVWNALIDMYGRCGAIQK 330
VKP+ VT SVLPAC L L G L T SFV +AL+DMY CG ++
Sbjct: 211 GVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVES 270
Query: 331 SRKIFVLMPHKNLVSWNVMISVYG 354
R +F + + + WN MI+ Y
Sbjct: 271 GRLVFDSVLDRKIGLWNAMIAGYA 294
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/385 (24%), Positives = 170/385 (44%), Gaps = 51/385 (13%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVR 62
LG Q+HAH+ G GS N +++ MY G + +F D+
Sbjct: 28 LGKQIHAHVFKFG------YGSFSSVTIDN--TLVNMYGKCGGLGDAYKVF----DRITE 75
Query: 63 PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGL 122
D + A +++ V + M+ FE ++ L+ + + C + GL
Sbjct: 76 RDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFT---LVSMALACSNLRKRDGL 132
Query: 123 ----------FEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYA 172
F + NN+L+ YAK L + + +DLV+WN+M++ ++
Sbjct: 133 WLGKQIHGCCFRKGHWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFS 192
Query: 173 LGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH---- 228
E L M+ ++P+ ++ + VL AC+ + ++ GK IH Y LR
Sbjct: 193 QNERFMEALMFL--RLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIE 250
Query: 229 --------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV- 279
+ + CG V VF+ + R + +WN++I+ + +S AL L ++
Sbjct: 251 NSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEME 310
Query: 280 IVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAI 328
A + N T+ S++PA ++ + + GL T ++ NALIDMY R G I
Sbjct: 311 AAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDI 370
Query: 329 QKSRKIFVLMPHKNLVSWNVMISVY 353
+ S++IF M +++VSWN +I+ Y
Sbjct: 371 KTSKRIFDSMEDRDIVSWNTIITSY 395
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/394 (23%), Positives = 168/394 (42%), Gaps = 75/394 (19%)
Query: 1 MELGIQVHAH-LIVCGVELCAFLGSQLLEVFCNWTSM-MGMYNVLGYYEEIVNLFYLMID 58
+ G ++HA+ L V +F+GS L++++CN + G + + L+ MI
Sbjct: 232 LRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIA 291
Query: 59 KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG------NACVKRPLLDLFIK 112
+ +H D M+ I+ E NA ++ +++
Sbjct: 292 GYAQSEH--------------------DEKALMLFIEMEAAAGLYSNATTMSSIVPAYVR 331
Query: 113 CGRMEITSGLF-----EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAM 167
C + G+ ++ + + N+LID Y++ +K S F ++ +D+VSWN +
Sbjct: 332 CEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTI 391
Query: 168 LAGYALGGFREEVTNLLDEMEMI--------------QTDMQPNTISLSGVLAACAQVKG 213
+ Y + G + LL EM+ I Q +PN+I+L VL CA +
Sbjct: 392 ITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSA 451
Query: 214 VKLGKAIHGYVLRHHIHLSTACG------FVICSC-----SVFNQLSTRDVVVWNSIISA 262
+ GK IH Y +R+ + G + C C VF+Q+ R+V+ WN II A
Sbjct: 452 LAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMA 511
Query: 263 FVRSGQVVDALDLLRDVIV-----ANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA 317
+ G+ ++L+L D++ VKP VT +++ +C + +GL + N
Sbjct: 512 YGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNE 571
Query: 318 ------------LIDMYGRCGAIQKSRKIFVLMP 339
++D+ GR G ++++ + MP
Sbjct: 572 HGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMP 605
>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 705
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 101/405 (24%), Positives = 189/405 (46%), Gaps = 55/405 (13%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ +GIQ+HA + L ++GS L++++ +W S++
Sbjct: 167 LNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITC 226
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI-KFEG 98
Y G + + +F +M+D GV PD V AC+ R G ++ ++ K+
Sbjct: 227 YEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRN 286
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
+ + L+D++ KC R+ +F+ M ++ + S++ YA+ +K + FS +
Sbjct: 287 DLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMM 346
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+K++VSWNA++AGY G EE L + + + + P + +L ACA + +KLG
Sbjct: 347 EKNVVSWNALIAGYTQNGENEEAVRLF--LLLKRESIWPTHYTFGNLLNACANLADLKLG 404
Query: 218 KAIHGYVLRHH-----------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ H +L+H I + CG V C VF ++ RDVV WN++I
Sbjct: 405 RQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMI 464
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------LGT 310
+ ++G +AL++ R ++V+ KP+ VT++ VL AC + +G LG
Sbjct: 465 VGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGL 524
Query: 311 GSFV--WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ ++D+ GR G + ++ + MP + V W +++
Sbjct: 525 APMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAA 569
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 147/309 (47%), Gaps = 26/309 (8%)
Query: 70 KVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ- 128
K+ +C K + ++ +I +F ++ L+D + KCG E +F+ M Q
Sbjct: 24 KLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQR 83
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
+ N+++ K L + F + + D SWNAM++G+A EE ++
Sbjct: 84 NTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFF--VD 141
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGF 237
M D N S L+ACA + + +G IH + + + + + CG
Sbjct: 142 MHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGV 201
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
V C+ F+ ++ R++V WNS+I+ + ++G AL++ ++ V+P+ +T+ SV+ A
Sbjct: 202 VACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSA 261
Query: 298 CLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
C +A+ +GL + V NAL+DMY +C + ++R +F MP +N+VS
Sbjct: 262 CASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVS 321
Query: 346 WNVMISVYG 354
M+ Y
Sbjct: 322 ETSMVCGYA 330
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 80/384 (20%), Positives = 158/384 (41%), Gaps = 92/384 (23%)
Query: 31 CNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
C+W +M+ + +EE + F M + + + AC+ L D +G ++
Sbjct: 117 CSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHAL 176
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ ++ LLD+++ ++L+D Y+KC + +
Sbjct: 177 ISKSRY---------LLDVYM---------------------GSALVDMYSKCGVVACAQ 206
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + +++VSWN+++ Y G + + + M+ ++P+ I+L+ V++ACA
Sbjct: 207 RAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVF--VMMMDNGVEPDEITLASVVSACAS 264
Query: 211 VKGVKLGKAIHGYVLRHHIH--------------------------------------LS 232
++ G IH V++ + S
Sbjct: 265 WSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETS 324
Query: 233 TACGF-----VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
CG+ V + +F+ + ++VV WN++I+ + ++G+ +A+ L + ++ P
Sbjct: 325 MVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPT 384
Query: 288 TVTIVSVLPACLKLAALPQGLGTGS-----------------FVWNALIDMYGRCGAIQK 330
T ++L AC LA L G + FV N+LIDMY +CG ++
Sbjct: 385 HYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVED 444
Query: 331 SRKIFVLMPHKNLVSWNVMISVYG 354
+F M +++VSWN MI Y
Sbjct: 445 GCLVFERMVERDVVSWNAMIVGYA 468
>gi|147859209|emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
Length = 728
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 99/373 (26%), Positives = 176/373 (47%), Gaps = 56/373 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+ + + G E + LF+ +++ GVRP+ V +AC EL D+ +G + +
Sbjct: 151 SWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLV 210
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSH 150
+ FE V L+ L ++ G +++ +F+ M++ D + +++D Y + L+ +
Sbjct: 211 VKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREAR 270
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ +++ +SW+AM+A Y+ G+ EE L +M+Q +PN + L+A A
Sbjct: 271 RIFDEMPERNEISWSAMIARYSQSGYAEEALKLFS--KMVQEGFKPNISCFACTLSALAS 328
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVI----CSCS-------VFNQLSTRDVVVWNS- 258
++ + G IHG+V + I G + C C VF+ + ++VV WNS
Sbjct: 329 LRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSM 388
Query: 259 ------------------------------IISAFVRSGQVVDALDLLRDVIVANVKPNT 288
IJ+ ++ + Q L++ ++V+ PN
Sbjct: 389 VGGYSINGRLEEXEELFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQTPNK 448
Query: 289 VTIVSVLPACLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVL 337
T SVL AC +A+L +G+ FV AL DMY +CG I S+++F
Sbjct: 449 STFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFER 508
Query: 338 MPHKNLVSWNVMI 350
MP KN +SW VMI
Sbjct: 509 MPEKNEISWTVMI 521
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/335 (23%), Positives = 142/335 (42%), Gaps = 79/335 (23%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH--FVCPKVYKACSELKDYRVGKDVYD 89
+W++M+ Y+ GY EE + LF M+ +G +P+ F C A + L+ G +++
Sbjct: 283 SWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFAC--TLSALASLRALSAGINIHG 340
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
++ I +D+D + +SLID Y KC
Sbjct: 341 HVTKIG------------------------------IDKDVFIGSSLIDLYCKCGKPDDG 370
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGF----------------------------REEVT 181
F I +K++V WN+M+ GY++ G E+
Sbjct: 371 RLVFDLILEKNVVCWNSMVGGYSINGRLEEXEELFELIPEKNDXSWGTIJAGYLENEQCE 430
Query: 182 NLLDEMEMIQTDMQ-PNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTA-- 234
+L+ + Q PN + S VL ACA + + G +HG +++ + I + TA
Sbjct: 431 KVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALT 490
Query: 235 -----CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV-IVANVKPNT 288
CG + S VF ++ ++ + W +I SG V++L L ++ + V PN
Sbjct: 491 DMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNE 550
Query: 289 VTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYG 323
+ ++SVL AC + +GL + +N++ +YG
Sbjct: 551 LMLLSVLFACSHCGLVDKGL----WYFNSMEKVYG 581
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 139/314 (44%), Gaps = 57/314 (18%)
Query: 95 KFEG-NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCK 152
+F+G + V ++ +++ G + LF+EM + V+ ++LI K ++ S
Sbjct: 81 EFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWY 140
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + +++VSW A ++G+ G E L ++++ ++PN ++ + V+ AC ++
Sbjct: 141 FERNPFQNVVSWTAAISGFVRNGLNFEALKLF--FRLLESGVRPNDVTFTSVVRACGELG 198
Query: 213 GVKLGKAIHGYVLR----HH-------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
LG +I G V++ H+ I LS G + + VF+++ RDVV W +I+
Sbjct: 199 DFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILD 258
Query: 262 AFV-------------------------------RSGQVVDALDLLRDVIVANVKPNTVT 290
A+V +SG +AL L ++ KPN
Sbjct: 259 AYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISC 318
Query: 291 IVSVLPACLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLMP 339
L A L AL G+ F+ ++LID+Y +CG R +F L+
Sbjct: 319 FACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLIL 378
Query: 340 HKNLVSWNVMISVY 353
KN+V WN M+ Y
Sbjct: 379 EKNVVCWNSMVGGY 392
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 102/267 (38%), Gaps = 86/267 (32%)
Query: 136 LIDFYAKCRYLKVSHCKFSKIKQ-------KDLVSWNAMLAGYALGGFREEVTNLLDEME 188
L+ Y CR KF++I Q DLV N M++ Y G + L DEM
Sbjct: 62 LLILYLNCR-------KFAEIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMP 114
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQL 248
+ N +S S +++ + G V S F +
Sbjct: 115 ------ERNEVSWSALISGLMKY------------------------GRVEESMWYFERN 144
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
++VV W + IS FVR+G +AL L ++ + V+PN VT SV+ AC +L G+
Sbjct: 145 PFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGM 204
Query: 309 GTGSFV------------------------------------------WNALIDMYGRCG 326
V W A++D Y G
Sbjct: 205 SILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETG 264
Query: 327 AIQKSRKIFVLMPHKNLVSWNVMISVY 353
++++R+IF MP +N +SW+ MI+ Y
Sbjct: 265 DLREARRIFDEMPERNEISWSAMIARY 291
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 69/357 (19%), Positives = 126/357 (35%), Gaps = 115/357 (32%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+ GI +H H+ G++ F+GS L++++C W SM+G
Sbjct: 332 LSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGG 391
Query: 40 YNVLGYY-------------------------------EEIVNLFYLMIDKGVRPDHFVC 68
Y++ G E+++ +F ++ G P+
Sbjct: 392 YSINGRLEEXEELFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQTPNKSTF 451
Query: 69 PKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ 128
V AC+ + G +V+ +I + + + V L D++ KCG + + +FE M
Sbjct: 452 SSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERM-- 509
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
+K+ +SW M+ G A GF E L +EME
Sbjct: 510 ----------------------------PEKNEISWTVMIQGLAESGFAVESLILFEEME 541
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQL 248
+++ PN + L VL AC+ CG V FN +
Sbjct: 542 RT-SEVAPNELMLLSVLFACSH------------------------CGLVDKGLWYFNSM 576
Query: 249 STRDVVV-----WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ + ++ RSG++ +A + +R + +P ++L C K
Sbjct: 577 EKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTI---PFQPEANAWAALLSGCKK 630
>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 736
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 102/399 (25%), Positives = 190/399 (47%), Gaps = 56/399 (14%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCN--------------------------WTSMMGM 39
Q+H+ +I G+ F S+L+E FC W +++
Sbjct: 43 QIHSLIIKSGLHNTLFAQSKLIE-FCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRA 101
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+++ ++LF M+ G+ P+ P ++K+C++ K K ++ + + + +
Sbjct: 102 HSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLH 161
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
V L+ ++ + G + +F++ +D + +LI Y ++ + F +I
Sbjct: 162 PHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPA 221
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
KD+VSWNAM+AGY G EE M+ + D+ PN ++ VL+AC ++ ++LGK
Sbjct: 222 KDVVSWNAMIAGYVQSGRFEEALACFTRMQ--EADVSPNQSTMVSVLSACGHLRSLELGK 279
Query: 219 AIHGYV-----------LRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
I +V + + + + CG + + +F+ + +DV++WN++I +
Sbjct: 280 WIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLS 339
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSF--- 313
+AL L ++ NV PN VT ++VLPAC L AL G GTG+
Sbjct: 340 LYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNV 399
Query: 314 -VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+W ++I MY +CG ++ + ++F M ++L SWN MIS
Sbjct: 400 SLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMIS 438
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 124/284 (43%), Gaps = 47/284 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G +EE + F M + V P+ V AC L+ +GK + ++
Sbjct: 226 SWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWV 285
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F N + L+D++ KCG + LF+ M+
Sbjct: 286 RDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGME------------------------ 321
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
KD++ WN M+ GY EE L + M++ ++ PN ++ VL ACA +
Sbjct: 322 ------DKDVILWNTMIGGYCHLSLYEEALVLFE--VMLRENVTPNDVTFLAVLPACASL 373
Query: 212 KGVKLGKAIHGYVLR--------HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVW 256
+ LGK +H Y+ + +++ L T+ CG V + VF + +R + W
Sbjct: 374 GALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASW 433
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
N++IS +G AL L ++I +P+ +T V VL AC +
Sbjct: 434 NAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQ 477
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 136/316 (43%), Gaps = 72/316 (22%)
Query: 104 RPLLDLFIKCGRME---------ITSGLFEEMDQDFLVNNSLIDFYA--KCRYLKVSHCK 152
P L+L KC + I SGL + + LI+F A R L +
Sbjct: 26 HPHLNLLAKCPDIPSLKQIHSLIIKSGLHNTL----FAQSKLIEFCALSPSRDLSYALSL 81
Query: 153 FSKIKQK--DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F I + ++ WN ++ ++L +L +M + + + PN+ + + +CA+
Sbjct: 82 FHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQM--LHSGLYPNSHTFPSLFKSCAK 139
Query: 211 VKGVKLGKAIHGYVLR------HHIHLS-------------------------------- 232
K K +H + L+ H+H S
Sbjct: 140 SKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTAL 199
Query: 233 ----TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288
+ G V + +F+++ +DVV WN++I+ +V+SG+ +AL + A+V PN
Sbjct: 200 ITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQ 259
Query: 289 VTIVSVLPACLKLAALPQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIFVL 337
T+VSVL AC L +L G GS+V NAL+DMY +CG I +RK+F
Sbjct: 260 STMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDG 319
Query: 338 MPHKNLVSWNVMISVY 353
M K+++ WN MI Y
Sbjct: 320 MEDKDVILWNTMIGGY 335
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 14/124 (11%)
Query: 22 LGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY 81
+GS+ L +W +M+ + G+ E + LF MI++G +PD V AC++
Sbjct: 425 MGSRSL---ASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFV 481
Query: 82 RVGKDVY-----DYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFE--EMDQDFLVNN 134
+G + DY IS K + C ++DL + G+ + L EM+ D +
Sbjct: 482 ELGHRYFSSMNKDYGISPKLQHYGC----MIDLLARSGKFDEAKVLMGNMEMEPDGAIWG 537
Query: 135 SLID 138
SL++
Sbjct: 538 SLLN 541
>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 672
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/396 (27%), Positives = 182/396 (45%), Gaps = 75/396 (18%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
E G Q+H +I CG + + L+ ++ W M+ +
Sbjct: 90 EFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGF 149
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G+ +E LF MI GV PD + +E + GK+++ Y++ G A
Sbjct: 150 VQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILR---HGIA 206
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
LD+F+K ++LID Y KCR + ++ F + D
Sbjct: 207 ------LDVFLK---------------------SALIDIYFKCRDVGMACKIFKQSTNVD 239
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+V A+++GY L G + + +++ M PN ++L+ VL ACA + + LGK +
Sbjct: 240 IVVCTAIISGYVLNGLNNDALEIF--RWLLEEKMSPNAVTLASVLPACAGLATLNLGKEL 297
Query: 221 HGYVLRHHI----HLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H +L+H + H+ +A CG + + +F ++ +D V WN+II+ ++G+
Sbjct: 298 HANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKP 357
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNAL 318
+A+DL R + + + V+I + L AC L AL G SF+ +AL
Sbjct: 358 QEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDSEVFAESAL 417
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
IDMYG+CG + +R +F +M KN VSWN +I+ YG
Sbjct: 418 IDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAAYG 453
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/383 (20%), Positives = 173/383 (45%), Gaps = 76/383 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNW---------------------TSMMGM 39
++ G ++H +++ G+ L FL S L++++ T+++
Sbjct: 190 LKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISG 249
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y + G + + +F ++++ + P+ V AC+ L +GK+++ ++
Sbjct: 250 YVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILK------ 303
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+D+ V ++++D YAKC L +++ F ++ +K
Sbjct: 304 ------------------------HGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEK 339
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D V WNA++ + G +E +L +M + + + +S+S L+ACA + + GKA
Sbjct: 340 DAVCWNAIITNCSQNGKPQEAIDLFRQMG--REGLSYDCVSISAALSACANLPALHHGKA 397
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH ++++ I + CG + + VF+ + ++ V WNSII+A+ G
Sbjct: 398 IHSFMIKGAFDSEVFAESALIDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAAYGSHGH 457
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL----------GTGSFV--WN 316
+ +L L ++ ++P+ VT +++L AC + +G+ G + + +
Sbjct: 458 LEVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPARMEHYA 517
Query: 317 ALIDMYGRCGAIQKSRKIFVLMP 339
++D++GR G + ++ + MP
Sbjct: 518 CIVDLFGRAGRLNEAFETIKNMP 540
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 121/247 (48%), Gaps = 24/247 (9%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D V +SLI YA+ ++ + F K+ KD V WN ML G+ G + ++M
Sbjct: 6 DEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMR 65
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS-----------TACGF 237
QT +PN+I+ + VL+ CA + G +HG V+ H + G
Sbjct: 66 NCQT--KPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQ 123
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ + +FN + +VV WN +I+ FV++G + +A L ++I A V P+++T S LP+
Sbjct: 124 LSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPS 183
Query: 298 CLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
+ A+L Q G+ F+ +ALID+Y +C + + KIF + ++V
Sbjct: 184 VTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVC 243
Query: 347 NVMISVY 353
+IS Y
Sbjct: 244 TAIISGY 250
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G FV ++LI +Y G I+ +R++F MP+K+ V WNVM++ +
Sbjct: 2 GFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGF 48
>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Glycine max]
Length = 785
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 100/376 (26%), Positives = 175/376 (46%), Gaps = 58/376 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ YN LG ++ V+ F M+ G+ P F V +C+ + VGK V+ ++
Sbjct: 112 SWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFV 171
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSH 150
+ + G V LL+++ KCG + +F+ M +D N++I + + ++
Sbjct: 172 VKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLAL 231
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ D+VSWN+++ GY G+ M + + ++P+ +L VL+ACA
Sbjct: 232 ALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFM-LKSSSLKPDKFTLGSVLSACAN 290
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVICSC---------------------------- 242
+ +KLGK IH +++R + ++ A G + S
Sbjct: 291 RESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFT 350
Query: 243 ----------------SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286
++F+ L RDVV W ++I + ++G + DAL L R +I KP
Sbjct: 351 SLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKP 410
Query: 287 NTVTIVSVLPACLKLAALPQGLG-----------TGSFVWNALIDMYGRCGAIQKSRKIF 335
N T+ +VL LA+L G + V NALI MY R G+I+ +RKIF
Sbjct: 411 NNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIF 470
Query: 336 V-LMPHKNLVSWNVMI 350
+ +++ ++W MI
Sbjct: 471 NHICSYRDTLTWTSMI 486
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/372 (23%), Positives = 170/372 (45%), Gaps = 32/372 (8%)
Query: 10 HLIVCGVELCAFLGSQLLEV-FCNWTSMMGMYNVLGYYEEIVNLFYLMI-DKGVRPDHFV 67
H+ C +L L Q+ + +W S++ Y GY + F M+ ++PD F
Sbjct: 221 HMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFT 280
Query: 68 CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFE--- 124
V AC+ + ++GK ++ +++ + V L+ ++ K G +E+ + E
Sbjct: 281 LGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITG 340
Query: 125 EMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLL 184
+ + SL+D Y K + + F +K +D+V+W AM+ GYA G + L
Sbjct: 341 TPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLF 400
Query: 185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLST 233
MI+ +PN +L+ VL+ + + + GK +H +R I + +
Sbjct: 401 --RLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYS 458
Query: 234 ACGFVICSCSVFNQL-STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
G + + +FN + S RD + W S+I + + G +A++L ++ N+KP+ +T V
Sbjct: 459 RSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYV 518
Query: 293 SVLPACLKLAALPQGLGTGSFVWNA------------LIDMYGRCGAIQKSRKIFVLMP- 339
VL AC + + QG + + N +ID+ GR G ++++ MP
Sbjct: 519 GVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPI 578
Query: 340 HKNLVSWNVMIS 351
++V+W ++S
Sbjct: 579 EPDVVAWGSLLS 590
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 159/352 (45%), Gaps = 65/352 (18%)
Query: 63 PDHF-VCPKVYKACSELKDYRVGKDVYDYMIS--IKFEGNACVKRPLLDLFIKCGRMEIT 119
P H C + ++ + +D +G+ ++ +I +++ G + LL+L++K G
Sbjct: 9 PSHSDACVHLLQSAIKSRDPFIGRCIHARIIKHGLRYLG-VFLTNNLLNLYVKTGSSSDA 67
Query: 120 SGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGY-ALGGFR 177
LF+EM + N+++ +AK L + F +I Q D VSW M+ GY LG F+
Sbjct: 68 HRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFK 127
Query: 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----------- 226
V L M+ + + P + + VLA+CA + + +GK +H +V++
Sbjct: 128 SAVHAFL---RMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVAN 184
Query: 227 HHIHLSTACGFVI-------------------------------CSCSVFNQLSTRDVVV 255
+++ CG + + ++F+Q++ D+V
Sbjct: 185 SLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVS 244
Query: 256 WNSIISAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVLPACLKLAALPQG------- 307
WNSII+ + G + AL+ ++ +++KP+ T+ SVL AC +L G
Sbjct: 245 WNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHI 304
Query: 308 ----LGTGSFVWNALIDMYGRCGAIQKSRKIFVL--MPHKNLVSWNVMISVY 353
+ V NALI MY + GA++ + +I + P N++++ ++ Y
Sbjct: 305 VRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGY 356
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 75/180 (41%), Gaps = 30/180 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WTSM+ G E + LF M+ ++PDH V AC+ + GK ++ M
Sbjct: 481 TWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLM 540
Query: 92 ISI-KFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
++ E + ++DL GR +GL EE +F+ N +
Sbjct: 541 KNVHNIEPTSSHYACMIDLL---GR----AGLLEEA-YNFIRNMPI-------------- 578
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+ D+V+W ++L+ + + + +++ +I + ++L+ L+AC +
Sbjct: 579 -------EPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGK 631
>gi|255549315|ref|XP_002515711.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545148|gb|EEF46658.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 462
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 106/396 (26%), Positives = 180/396 (45%), Gaps = 77/396 (19%)
Query: 4 GIQVHAHLIVCG-VELCAFLGSQLLEVFCN---------------------WTSMMGMYN 41
G Q+HA++I G ++ +L ++L + + W M+ Y
Sbjct: 60 GQQLHAYIITSGNLQNNTYLSTKLAAFYASCGLMAAAQIIFDGIVLKNSFLWNFMIRGYA 119
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G+ + + L+ M G + D F P V KAC +L+D G V+ ++ F
Sbjct: 120 CNGFPVKALFLYQDMSSFGQKADKFTYPFVIKACGDLRDVEFGWRVHCEVVITGF----- 174
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ D V NSL+ Y+K +K++ F ++ +DL
Sbjct: 175 -------------------------NLDIYVGNSLLAMYSKFGNMKMARMVFDRMPVRDL 209
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
SWN M++GY G EV + + M+ Q + + ++L G+L CA++ K GK IH
Sbjct: 210 TSWNTMISGYLKNGKPREVLAIFNLMK--QIGLSVDDMTLIGLLCTCAELFAEKQGKEIH 267
Query: 222 GYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
GYV+R+ I + C ++ + +F ++ +D V WNS+IS + R+
Sbjct: 268 GYVVRNRHSVFNHFLINSLIEMYCKCNSMVDARKLFEHMAWKDTVSWNSMISGYARNRDA 327
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNAL 318
++L + +++ KP+ +T ++VL AC ++ A+ +G FV AL
Sbjct: 328 FESLRVFCRMVLEGTKPDKITFITVLGACEQITAMEFGRSVHSYLSKKGFSATIFVATAL 387
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
IDMY +CG + + +F MP KNL W+ MIS YG
Sbjct: 388 IDMYAKCGNLACAHLVFEEMPEKNLFCWSAMISGYG 423
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/318 (23%), Positives = 143/318 (44%), Gaps = 63/318 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMY 40
E G +VH +++ G L ++G+ LL ++ +W +M+ Y
Sbjct: 160 EFGWRVHCEVVITGFNLDIYVGNSLLAMYSKFGNMKMARMVFDRMPVRDLTSWNTMISGY 219
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G E++ +F LM G+ D + C+EL + GK+++ Y++
Sbjct: 220 LKNGKPREVLAIFNLMKQIGLSVDDMTLIGLLCTCAELFAEKQGKEIHGYVV-------- 271
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
R +F FL+N SLI+ Y KC + + F + KD
Sbjct: 272 ---RNRHSVF-----------------NHFLIN-SLIEMYCKCNSMVDARKLFEHMAWKD 310
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
VSWN+M++GYA R+ +L M+ +P+ I+ VL AC Q+ ++ G+++
Sbjct: 311 TVSWNSMISGYARN--RDAFESLRVFCRMVLEGTKPDKITFITVLGACEQITAMEFGRSV 368
Query: 221 HGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H Y+ + I ++TA CG + C+ VF ++ +++ W+++IS + G
Sbjct: 369 HSYLSKKGFSATIFVATALIDMYAKCGNLACAHLVFEEMPEKNLFCWSAMISGYGIHGMG 428
Query: 270 VDALDLLRDVIVANVKPN 287
+A+ L ++I ++ P+
Sbjct: 429 REAISLFHEMIKNHIIPD 446
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 23/173 (13%)
Query: 204 VLAACAQVKGVKLGKAIHGYV-----LRHHIHLST-------ACGFVICSCSVFNQLSTR 251
VL +K G+ +H Y+ L+++ +LST +CG + + +F+ + +
Sbjct: 47 VLQTLTSIKSFTKGQQLHAYIITSGNLQNNTYLSTKLAAFYASCGLMAAAQIIFDGIVLK 106
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP------ 305
+ +WN +I + +G V AL L +D+ K + T V+ AC L +
Sbjct: 107 NSFLWNFMIRGYACNGFPVKALFLYQDMSSFGQKADKFTYPFVIKACGDLRDVEFGWRVH 166
Query: 306 -----QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G +V N+L+ MY + G ++ +R +F MP ++L SWN MIS Y
Sbjct: 167 CEVVITGFNLDIYVGNSLLAMYSKFGNMKMARMVFDRMPVRDLTSWNTMISGY 219
>gi|225438700|ref|XP_002277701.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial [Vitis vinifera]
Length = 1008
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 165/333 (49%), Gaps = 54/333 (16%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G +E+++ ++ G D F P V KAC+ L + + V+ ++ FE N
Sbjct: 134 GLFEDVLCVYLKCRVLGCPSDDFTFPFVIKACTALGAVWIAEGVHCIVLRTSFEEN---- 189
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
++ +L+DFYAK + + KI Q DLV+
Sbjct: 190 --------------------------LVIQTALVDFYAKTGRMVKARLVLDKISQPDLVT 223
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
WNA+++GY+L GF +EV +L ++ + ++PN + + ++ C ++K + +GK+IHG+
Sbjct: 224 WNALISGYSLNGFDKEVFEVLRQIN--EMGLKPNVSTFASIIPLCTRMKCLDIGKSIHGF 281
Query: 224 VLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
V++ I + G + + +F+ + ++VV+WNS+ISA+ ++ + +A
Sbjct: 282 VVKSGFSSDEFLTPALISMYAGGGNLFIARDLFDSAAEKNVVIWNSMISAYAQNQKSSEA 341
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDM 321
+ + ++ AN++PN VT VS++P C A G L + V AL+ M
Sbjct: 342 FKMFQQMLKANMQPNVVTFVSIIPCCENSANFWYGKSLHAHVMKYRLDSQLSVATALLSM 401
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
Y + G + + IF MP +NL+SWN MIS YG
Sbjct: 402 YAKLGDLNSADFIFYQMPRRNLLSWNSMISGYG 434
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 90/396 (22%), Positives = 174/396 (43%), Gaps = 75/396 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+++G +H ++ G FL L+ ++ W SM+
Sbjct: 272 LDIGKSIHGFVVKSGFSSDEFLTPALISMYAGGGNLFIARDLFDSAAEKNVVIWNSMISA 331
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y E +F M+ ++P+ + C ++ GK ++ +++ + +
Sbjct: 332 YAQNQKSSEAFKMFQQMLKANMQPNVVTFVSIIPCCENSANFWYGKSLHAHVMKYRLDSQ 391
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V LL ++ K G + DF+ F ++ ++
Sbjct: 392 LSVATALLSMYAKLGDLN---------SADFI---------------------FYQMPRR 421
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+L+SWN+M++GY G E + +M+ D P+ IS+ +L+AC++++ + LGKA
Sbjct: 422 NLLSWNSMISGYGHNGLWEASMDAFCDMQFEGFD--PDAISIVNILSACSKLEAILLGKA 479
Query: 220 IHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
H + R ++++S A CG + S +F ++ R+ + WN++IS V +G
Sbjct: 480 AHAFSFRKEFDSNLNISNALLAFYSDCGKLSSSFKLFQKMPLRNAISWNTLISGCVHNGD 539
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------VWNA 317
A+ LL + ++ + VT++S++P C L QG+ + + NA
Sbjct: 540 TKKAVALLHKMQQEKMELDLVTLISIIPICRVAENLIQGMTLHGYAIKTGFACDVSLVNA 599
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
LI MY CG I + +F +MP +++VSWN +I+ Y
Sbjct: 600 LISMYFNCGDINAGKFLFEVMPWRSIVSWNALITGY 635
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/341 (22%), Positives = 154/341 (45%), Gaps = 54/341 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +++ Y++ G+ +E+ + + + G++P+ + C+ +K +GK ++ +++
Sbjct: 224 WNALISGYSLNGFDKEVFEVLRQINEMGLKPNVSTFASIIPLCTRMKCLDIGKSIHGFVV 283
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F + + L+ ++ G + I LF+
Sbjct: 284 KSGFSSDEFLTPALISMYAGGGNLFIARDLFDSA-------------------------- 317
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
+K++V WN+M++ YA E + +M++ +MQPN ++ ++ C
Sbjct: 318 ----AEKNVVIWNSMISAYAQNQKSSEAFKMFQ--QMLKANMQPNVVTFVSIIPCCENSA 371
Query: 213 GVKLGKAIHGYVLRHHI--HLSTACGFVICSCS---------VFNQLSTRDVVVWNSIIS 261
GK++H +V+++ + LS A + +F Q+ R+++ WNS+IS
Sbjct: 372 NFWYGKSLHAHVMKYRLDSQLSVATALLSMYAKLGDLNSADFIFYQMPRRNLLSWNSMIS 431
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-------- 313
+ +G ++D D+ P+ ++IV++L AC KL A+ G +F
Sbjct: 432 GYGHNGLWEASMDAFCDMQFEGFDPDAISIVNILSACSKLEAILLGKAAHAFSFRKEFDS 491
Query: 314 ---VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ NAL+ Y CG + S K+F MP +N +SWN +IS
Sbjct: 492 NLNISNALLAFYSDCGKLSSSFKLFQKMPLRNAISWNTLIS 532
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 124/243 (51%), Gaps = 27/243 (11%)
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
N+LI Y C + F + + +VSWNA++ GY + EV + +MI+
Sbjct: 598 NALISMYFNCGDINAGKFLFEVMPWRSIVSWNALITGYRFHYLQNEV--MASFCQMIREG 655
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCS---------- 243
+PN ++L +L +C + + GK+IH + +R + + T + S
Sbjct: 656 QKPNYVTLLNLLPSC---RTLLQGKSIHAFAVRTGVIVETPIITSLISMYARFENINSFI 712
Query: 244 -VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
+F D+ +WN+I+S +V++ +++ +++ A V+P+ +T +S++ AC++L+
Sbjct: 713 FLFEMGGKEDIALWNAIMSVYVQTKNAKESVTFFCELLHARVEPDYITFLSLISACVQLS 772
Query: 303 AL-----------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+L +G + NALID++ RCG I ++KIF + K+ VSW+ MI+
Sbjct: 773 SLNLSNSVMAYVIQKGFDKHIVISNALIDLFARCGNISIAKKIFEGLSSKDAVSWSTMIN 832
Query: 352 VYG 354
YG
Sbjct: 833 GYG 835
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/341 (22%), Positives = 147/341 (43%), Gaps = 51/341 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y G +E ++ F M +G PD + ACS+L+ +GK + +
Sbjct: 425 SWNSMISGYGHNGLWEASMDAFCDMQFEGFDPDAISIVNILSACSKLEAILLGKAAHAF- 483
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+E D + ++N+L+ FY+ C L S
Sbjct: 484 -----------------------------SFRKEFDSNLNISNALLAFYSDCGKLSSSFK 514
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K+ ++ +SWN +++G G ++ LL +M+ Q M+ + ++L ++ C
Sbjct: 515 LFQKMPLRNAISWNTLISGCVHNGDTKKAVALLHKMQ--QEKMELDLVTLISIIPICRVA 572
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ + G +HGY ++ I + CG + +F + R +V WN++I
Sbjct: 573 ENLIQGMTLHGYAIKTGFACDVSLVNALISMYFNCGDINAGKFLFEVMPWRSIVSWNALI 632
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA--------ALPQGLGTGS 312
+ + + + +I KPN VT++++LP+C L A+ G+ +
Sbjct: 633 TGYRFHYLQNEVMASFCQMIREGQKPNYVTLLNLLPSCRTLLQGKSIHAFAVRTGVIVET 692
Query: 313 FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ +LI MY R I +F + +++ WN ++SVY
Sbjct: 693 PIITSLISMYARFENINSFIFLFEMGGKEDIALWNAIMSVY 733
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/337 (22%), Positives = 145/337 (43%), Gaps = 59/337 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ Y E++ F MI +G +P++ + +C L GK ++ +
Sbjct: 627 SWNALITGYRFHYLQNEVMASFCQMIREGQKPNYVTLLNLLPSCRTLLQ---GKSIHAFA 683
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ V+ P++ SLI YA+ +
Sbjct: 684 V----RTGVIVETPII--------------------------TSLISMYARFENINSFIF 713
Query: 152 KFSKIKQKDLVSWNAMLAGYA-LGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++D+ WNA+++ Y +E VT E++ ++P+ I+ +++AC Q
Sbjct: 714 LFEMGGKEDIALWNAIMSVYVQTKNAKESVTFFC---ELLHARVEPDYITFLSLISACVQ 770
Query: 211 VKGVKLGKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ + L ++ YV++ HI +S A CG + + +F LS++D V W+++
Sbjct: 771 LSSLNLSNSVMAYVIQKGFDKHIVISNALIDLFARCGNISIAKKIFEGLSSKDAVSWSTM 830
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-LGTGSFV---- 314
I+ + G AL LL + ++ +KP+ +T SVL AC + QG + S V
Sbjct: 831 INGYGLHGDSEAALALLSQMRLSGMKPDGITYASVLSACSHGGFIDQGWMIFNSMVEEGV 890
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
+ ++D+ GR G + ++ +P K VS
Sbjct: 891 PRRMEHYACMVDLLGRTGQLNEAYDFVEKLPCKPSVS 927
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 112/271 (41%), Gaps = 63/271 (23%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W ++M +Y +E V F ++ V PD+ + AC +L + V Y+I
Sbjct: 726 WNAIMSVYVQTKNAKESVTFFCELLHARVEPDYITFLSLISACVQLSSLNLSNSVMAYVI 785
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F D+ +++N+LID +A+C + ++
Sbjct: 786 QKGF------------------------------DKHIVISNALIDLFARCGNISIAKKI 815
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + KD VSW+ M+ GY L G E LL +M + + M+P+ I+ + VL+AC+
Sbjct: 816 FEGLSSKDAVSWSTMINGYGLHGDSEAALALLSQMRL--SGMKPDGITYASVLSACS--- 870
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQL----STRDVVVWNSIISAFVRSGQ 268
HG GF+ +FN + R + + ++ R+GQ
Sbjct: 871 --------HG-------------GFIDQGWMIFNSMVEEGVPRRMEHYACMVDLLGRTGQ 909
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ +A D + + KP+ + S+L AC+
Sbjct: 910 LNEAYDFVEKL---PCKPSVSLLESLLGACI 937
>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial [Vitis vinifera]
gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
Length = 1048
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 114/433 (26%), Positives = 198/433 (45%), Gaps = 81/433 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++LG QVH +I G E +F L++++ +WT+M+
Sbjct: 198 IDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAG 257
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG- 98
Y +G EE + +F M G+ PD V AC L D++ M +
Sbjct: 258 YVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRLDDACDLFVQMPNTNVVAW 317
Query: 99 ----NACVKR----PLLDLF-------IKCGRMEITS-------------GLF------- 123
+ VKR +D F +K R + S GL
Sbjct: 318 NVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIK 377
Query: 124 EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNL 183
+ ++ + V +SLI+ YAKC ++ + F + +++LV WNAML GYA G+ +V L
Sbjct: 378 QGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKL 437
Query: 184 LDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLS 232
EM P+ + + +L+ACA ++ +++G+ +H ++++H+ + +
Sbjct: 438 FSEMR--GCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMY 495
Query: 233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
CG + + F + RD V WN+II +V+ +A ++ R +I+ + P+ V++
Sbjct: 496 AKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLA 555
Query: 293 SVLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK 341
S+L C L AL Q GL T + ++LIDMY +CGAI+ +R +F MP +
Sbjct: 556 SILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSR 615
Query: 342 NLVSWNVMISVYG 354
++VS N +I+ Y
Sbjct: 616 SVVSMNAIIAGYA 628
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 156/333 (46%), Gaps = 67/333 (20%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ MY+ G E+++ F + + GV P+ F V +C+ L D +GK V+ +I
Sbjct: 150 WNSVLSMYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVI 209
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ FE N+ + L+D++ KCG SL+D R +
Sbjct: 210 KMGFEFNSFCEGSLIDMYSKCG--------------------SLVD----ARKI------ 239
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + D VSW AM+AGY G EE + ++M+ + + P+ ++ V+ AC
Sbjct: 240 FDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKL--GLVPDQVAFVTVITAC---- 293
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
V LG+ L A C +F Q+ +VV WN +IS V+ G ++A
Sbjct: 294 -VGLGR------------LDDA-------CDLFVQMPNTNVVAWNVMISGHVKRGCDIEA 333
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWNALIDM 321
+D +++ VK T+ SVL A L AL QGL + +V ++LI+M
Sbjct: 334 IDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINM 393
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
Y +C ++ ++K+F + +NLV WN M+ Y
Sbjct: 394 YAKCEKMEAAKKVFDALDERNLVLWNAMLGGYA 426
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 82/330 (24%), Positives = 152/330 (46%), Gaps = 65/330 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+ G+ VHA I G+ ++GS L+ ++ W +M+G
Sbjct: 365 LNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGG 424
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y GY +++ LF M G PD F + AC+ L+ +G+ ++ ++I FE N
Sbjct: 425 YAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYN 484
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V N+L+D YAKC L+ + +F I+ +
Sbjct: 485 ------------------------------LFVENTLVDMYAKCGALEEARQQFEFIRNR 514
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D VSWNA++ GY +E N+ MI + P+ +SL+ +L+ CA ++ ++ G+
Sbjct: 515 DNVSWNAIIVGYVQEEDEDEAFNMF--RRMILDGIAPDEVSLASILSGCANLQALEQGEQ 572
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H ++++ I + CG + + VF+ + +R VV N+II+ + ++
Sbjct: 573 VHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQN-D 631
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+V+A+DL +++ + P+ +T S+L AC
Sbjct: 632 LVEAIDLFQEMQNEGLNPSEITFASLLDAC 661
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 96/396 (24%), Positives = 171/396 (43%), Gaps = 79/396 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E+G Q+H+ +I E F+ + L++++ +W +++
Sbjct: 466 LEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVG 525
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y +E N+F MI G+ PD + C+ L+ G+ V+ +++
Sbjct: 526 YVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVK------ 579
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
SGL +SLID Y KC ++ + FS + +
Sbjct: 580 --------------------SGL----QTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSR 615
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+VS NA++AGYA E + +L EM+ + P+ I+ + +L AC + LG+
Sbjct: 616 SVVSMNAIIAGYAQNDLVEAI-DLFQEMQ--NEGLNPSEITFASLLDACTGPYKLNLGRQ 672
Query: 220 IHGYVL-RHHIHLSTACGFVICSCSVFNQLST------------RDVVVWNSIISAFVRS 266
IH + R ++ G + + +Q T + ++W +IIS ++
Sbjct: 673 IHCLIQKRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQN 732
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVW 315
G +AL L +++ N +P+ T SVL AC LA+L GL +
Sbjct: 733 GCSEEALQLYQEMHRNNARPDQATFASVLRACSILASLGDGRMIHSLIFHVGLDSDELTG 792
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKN-LVSWNVMI 350
+A++DMY +CG ++ S ++F M KN ++SWN MI
Sbjct: 793 SAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMI 828
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 120/231 (51%), Gaps = 37/231 (16%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
+ ++++D YAKC ++ + F++++++D+++WN++L+ Y+ G E+V ++
Sbjct: 118 LGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQ--N 175
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVIC 240
+ PN + + VL++CA++ + LGK +H V++ I + + CG ++
Sbjct: 176 CGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVD 235
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ +F+ + D V W ++I+ +V+ G +AL + D+ + P+ V V+V+ AC+
Sbjct: 236 ARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVG 295
Query: 301 LAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
L G + + +FV MP+ N+V+WNVMIS
Sbjct: 296 L------------------------GRLDDACDLFVQMPNTNVVAWNVMIS 322
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 89/400 (22%), Positives = 169/400 (42%), Gaps = 85/400 (21%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------WTSMMGMYNVLGY 45
+E G QVH L+ G++ C + GS L++++ S++ M ++
Sbjct: 567 LEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAG 626
Query: 46 YE-----EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
Y E ++LF M ++G+ P + AC+ +G+ ++
Sbjct: 627 YAQNDLVEAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIH------------ 674
Query: 101 CV--KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK- 157
C+ KR LL D DFL SL+ Y + + FS+ +
Sbjct: 675 CLIQKRGLL------------------YDGDFL-GVSLLVMYMNSQRKTDADILFSEFQY 715
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
K + W A+++G+ G EE L EM + + +P+ + + VL AC+ + + G
Sbjct: 716 PKSTILWTAIISGHTQNGCSEEALQLYQEMH--RNNARPDQATFASVLRACSILASLGDG 773
Query: 218 KAIHGYVLRHHIHLST-------------ACGFVICSCSVFNQLSTR-DVVVWNSIISAF 263
+ IH + H+ L + CG + S VF ++ ++ DV+ WNS+I F
Sbjct: 774 RMIHSLIF--HVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGF 831
Query: 264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA------ 317
++G +AL + ++ ++P+ VT + VL AC + +G + ++
Sbjct: 832 AKNGYAENALKIFDEMKHTRIRPDDVTFLGVLTACSHAGRVSEGREIFDIMVHSYKIVPR 891
Query: 318 ------LIDMYGRCGAIQKSRK-IFVLMPHKNLVSWNVMI 350
+ID+ GR G ++++ + I L N + W ++
Sbjct: 892 LDHCACMIDLLGRWGFLKEAEEFIDKLNFEPNAMIWATLL 931
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 77/172 (44%), Gaps = 11/172 (6%)
Query: 193 DMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRD 252
D P ++ + + + +K G G + + L CG V + FNQL RD
Sbjct: 87 DETPQRLAQASRTSKTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRD 146
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL----------- 301
++ WNS++S + R G + + + V PN T VL +C +L
Sbjct: 147 ILAWNSVLSMYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHC 206
Query: 302 AALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ G SF +LIDMY +CG++ +RKIF + + VSW MI+ Y
Sbjct: 207 GVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGY 258
>gi|255549567|ref|XP_002515835.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544990|gb|EEF46504.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 655
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 110/372 (29%), Positives = 182/372 (48%), Gaps = 47/372 (12%)
Query: 28 EVF--CNWTSMMGMYNVLGYYEEIVNLFYLMIDKG---VRPDHFVCPKVYKACSELKDYR 82
EVF +W SM+ +Y G + + LF M G + PD V AC+ + D+
Sbjct: 204 EVFDLVSWNSMIAVYLQSGDLKSGIELFRRMWKVGEFDIVPDAVSLVNVLPACASMGDWL 263
Query: 83 VGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYA 141
GK V+ + I + V L+D++ KCG M I + +F+ M +D + N+++ Y+
Sbjct: 264 CGKQVHGFAIRYGLFEDVFVANSLVDMYAKCGLMCIANKVFDRMQHKDVVSWNAMVTGYS 323
Query: 142 KCRYLKVSHCKFSKIKQK----DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN 197
+ + + F K++++ D+VSW+A++AGYA G E N+ +M++ ++PN
Sbjct: 324 QIGKFEDALGLFEKMREEKIQLDVVSWSAVIAGYAQRGLGYEALNVFRQMQV--CGLRPN 381
Query: 198 TISLSGVLAACAQVKGVKLGKAIHGY------------------VLRHHIHLSTACGFVI 239
++L +L+ CA V + GK H Y V+ I + T C +
Sbjct: 382 EVTLVSLLSGCASVGALLHGKETHCYSIKCVLNFDRSDPRDELLVVNAIIDMYTKCKDIN 441
Query: 240 CSCSVFNQLSTRD--VVVWNSIISAFVRSGQVVDALDLLRDVIVA---NVKPNTVTIVSV 294
++FN + +D VV W ++I + + G+ DAL+L ++ +VKPN TI
Sbjct: 442 VGRAIFNSIPPKDRNVVTWTAMIGGYAQHGEANDALELFSQMLKQYNRSVKPNAFTISCA 501
Query: 295 LPACLKLAALPQGLGTGSFVW------------NALIDMYGRCGAIQKSRKIFVLMPHKN 342
L AC +LAAL G +FV N LIDMY + G + +R +F M H+N
Sbjct: 502 LMACARLAALRFGRQIHAFVLRDQYDCDVLYVANCLIDMYSKSGDMDAARLVFDNMKHRN 561
Query: 343 LVSWNVMISVYG 354
VSW +++ YG
Sbjct: 562 TVSWTSLMTGYG 573
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 101/391 (25%), Positives = 162/391 (41%), Gaps = 98/391 (25%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +++ LG + ++LF M PDH+ P V+KAC EL + G ++ +
Sbjct: 107 WNALIRRAVRLGLLQHSLSLFRTMRRLNWSPDHYTFPFVFKACGELPSFLHGSCIHAIVC 166
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEE--MDQDFLVNNSLIDFYAKCRYLKVSH 150
S F+ N V ++ ++ +CG +F+E M + F
Sbjct: 167 STGFDSNVFVCNAVVAMYGRCGASSYARQMFDELLMGEVF-------------------- 206
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI-QTDMQPNTISLSGVLAACA 209
DLVSWN+M+A Y G + L M + + D+ P+ +SL VL ACA
Sbjct: 207 ---------DLVSWNSMIAVYLQSGDLKSGIELFRRMWKVGEFDIVPDAVSLVNVLPACA 257
Query: 210 QVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ GK +HG+ +R+ + + CG + + VF+++ +DVV WN+
Sbjct: 258 SMGDWLCGKQVHGFAIRYGLFEDVFVANSLVDMYAKCGLMCIANKVFDRMQHKDVVSWNA 317
Query: 259 IISAFVRSGQVVDALDL-----------------------------------LRDVIVAN 283
+++ + + G+ DAL L R + V
Sbjct: 318 MVTGYSQIGKFEDALGLFEKMREEKIQLDVVSWSAVIAGYAQRGLGYEALNVFRQMQVCG 377
Query: 284 VKPNTVTIVSVLPACLKLAALPQGLGTGSF------------------VWNALIDMYGRC 325
++PN VT+VS+L C + AL G T + V NA+IDMY +C
Sbjct: 378 LRPNEVTLVSLLSGCASVGALLHGKETHCYSIKCVLNFDRSDPRDELLVVNAIIDMYTKC 437
Query: 326 GAIQKSRKIFVLMPHK--NLVSWNVMISVYG 354
I R IF +P K N+V+W MI Y
Sbjct: 438 KDINVGRAIFNSIPPKDRNVVTWTAMIGGYA 468
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 131/294 (44%), Gaps = 42/294 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W++++ Y G E +N+F M G+RP+ + C+ + GK+ + Y
Sbjct: 349 SWSAVIAGYAQRGLGYEALNVFRQMQVCGLRPNEVTLVSLLSGCASVGALLHGKETHCYS 408
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD--QDFLVNNSLIDFYAKCRYLKVS 149
I CV F+ D + LV N++ID Y KC+ + V
Sbjct: 409 IK-------CVLN------------------FDRSDPRDELLVVNAIIDMYTKCKDINVG 443
Query: 150 HCKFSKIKQKD--LVSWNAMLAGYALGGFREEVTNLLDEM-EMIQTDMQPNTISLSGVLA 206
F+ I KD +V+W AM+ GYA G + L +M + ++PN ++S L
Sbjct: 444 RAIFNSIPPKDRNVVTWTAMIGGYAQHGEANDALELFSQMLKQYNRSVKPNAFTISCALM 503
Query: 207 ACAQVKGVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVV 254
ACA++ ++ G+ IH +VLR I + + G + + VF+ + R+ V
Sbjct: 504 ACARLAALRFGRQIHAFVLRDQYDCDVLYVANCLIDMYSKSGDMDAARLVFDNMKHRNTV 563
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
W S+++ + G +A+ + ++ + + +T + VL AC + +G+
Sbjct: 564 SWTSLMTGYGMHGHGEEAIKVFDEMRREGLVSDGITFLVVLYACSHSGMVDEGI 617
>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
Length = 1984
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 100/373 (26%), Positives = 177/373 (47%), Gaps = 56/373 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+ + + G E + LF+ +++ GVRP+ V +AC EL D+ +G + +
Sbjct: 151 SWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLV 210
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSH 150
+ FE V L+ L ++ G +++ +F+ M++ +V+ +++D Y + L+ +
Sbjct: 211 VKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREAR 270
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ +++ +SW+AM+A Y+ G+ EE L +M+Q +PN + L+A A
Sbjct: 271 RIFDEMPERNEISWSAMIARYSQSGYAEEALKLFS--KMVQEGFKPNISCFACTLSALAS 328
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVI----CSCS-------VFNQLSTRDVVVWNS- 258
++ + G IHG+V + I G + C C VF+ + ++VV WNS
Sbjct: 329 LRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSM 388
Query: 259 ------------------------------IISAFVRSGQVVDALDLLRDVIVANVKPNT 288
II+ ++ + Q L++ ++V+ PN
Sbjct: 389 VGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNK 448
Query: 289 VTIVSVLPACLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVL 337
T SVL AC +A+L +G+ FV AL DMY +CG I S+++F
Sbjct: 449 STFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFER 508
Query: 338 MPHKNLVSWNVMI 350
MP KN +SW VMI
Sbjct: 509 MPEKNEISWTVMI 521
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 79/335 (23%), Positives = 142/335 (42%), Gaps = 79/335 (23%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH--FVCPKVYKACSELKDYRVGKDVYD 89
+W++M+ Y+ GY EE + LF M+ +G +P+ F C A + L+ G +++
Sbjct: 283 SWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFAC--TLSALASLRALSAGINIHG 340
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
++ I +D+D + +SLID Y KC
Sbjct: 341 HVTKIG------------------------------IDKDVFIGSSLIDLYCKCGKPDDG 370
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGF----------------------------REEVT 181
F I +K++V WN+M+ GY++ G E+
Sbjct: 371 RLVFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCE 430
Query: 182 NLLDEMEMIQTDMQ-PNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTA-- 234
+L+ + Q PN + S VL ACA + + G +HG +++ + I + TA
Sbjct: 431 KVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALT 490
Query: 235 -----CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV-IVANVKPNT 288
CG + S VF ++ ++ + W +I SG V++L L ++ + V PN
Sbjct: 491 DMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNE 550
Query: 289 VTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYG 323
+ ++SVL AC + +GL + +N++ +YG
Sbjct: 551 LMLLSVLFACSHCGLVDKGL----WYFNSMEKVYG 581
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 139/315 (44%), Gaps = 57/315 (18%)
Query: 95 KFEG-NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCK 152
+F+G + V ++ +++ G + LF+EM + V+ ++LI K ++ S
Sbjct: 81 EFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWY 140
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + +++VSW A ++G+ G E L ++++ ++PN ++ + V+ AC ++
Sbjct: 141 FERNPFQNVVSWTAAISGFVRNGLNFEALKLF--FRLLESGVRPNDVTFTSVVRACGELG 198
Query: 213 GVKLGKAIHGYVLR----HH-------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
LG +I G V++ H+ I LS G + + VF+++ RDVV W +I+
Sbjct: 199 DFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILD 258
Query: 262 AFV-------------------------------RSGQVVDALDLLRDVIVANVKPNTVT 290
A+V +SG +AL L ++ KPN
Sbjct: 259 AYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISC 318
Query: 291 IVSVLPACLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLMP 339
L A L AL G+ F+ ++LID+Y +CG R +F L+
Sbjct: 319 FACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLIL 378
Query: 340 HKNLVSWNVMISVYG 354
KN+V WN M+ Y
Sbjct: 379 EKNVVCWNSMVGGYS 393
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 102/268 (38%), Gaps = 86/268 (32%)
Query: 136 LIDFYAKCRYLKVSHCKFSKIKQ-------KDLVSWNAMLAGYALGGFREEVTNLLDEME 188
L+ Y CR KF++I Q DLV N M++ Y G + L DEM
Sbjct: 62 LLILYLNCR-------KFAEIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMP 114
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQL 248
+ N +S S +++ + G V S F +
Sbjct: 115 ------ERNEVSWSALISGLMKY------------------------GRVEESMWYFERN 144
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
++VV W + IS FVR+G +AL L ++ + V+PN VT SV+ AC +L G+
Sbjct: 145 PFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGM 204
Query: 309 GTGSFV------------------------------------------WNALIDMYGRCG 326
V W A++D Y G
Sbjct: 205 SILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETG 264
Query: 327 AIQKSRKIFVLMPHKNLVSWNVMISVYG 354
++++R+IF MP +N +SW+ MI+ Y
Sbjct: 265 DLREARRIFDEMPERNEISWSAMIARYS 292
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 97/259 (37%), Gaps = 83/259 (32%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
GI +H H+ G++ F+GS L++++C W SM+G Y++
Sbjct: 335 GINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSI 394
Query: 43 LGYY-------------------------------EEIVNLFYLMIDKGVRPDHFVCPKV 71
G E+++ +F ++ G P+ V
Sbjct: 395 NGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSV 454
Query: 72 YKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFL 131
AC+ + G +V+ +I + + + V L D++ KCG + + +FE M
Sbjct: 455 LCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERM----- 509
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
+K+ +SW M+ G A GF E L +EME
Sbjct: 510 -------------------------PEKNEISWTVMIQGLAESGFAVESLILFEEMERT- 543
Query: 192 TDMQPNTISLSGVLAACAQ 210
+++ PN + L VL AC+
Sbjct: 544 SEVAPNELMLLSVLFACSH 562
>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Glycine max]
Length = 849
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 116/393 (29%), Positives = 180/393 (45%), Gaps = 77/393 (19%)
Query: 6 QVHAHLIVCGV-ELCAFLGSQLLEVFC---------------------NWTSMMGMYNVL 43
++HAH++V G + FL + LL + W+SM+ MY
Sbjct: 72 KIHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQH 131
Query: 44 GYYEEIVNLF-YLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
GY E + LF M +P+ ++ V +AC++L GN
Sbjct: 132 GYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQL-------------------GNLSQ 172
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L +K G + QD V SLIDFYAK Y+ + F +K K V
Sbjct: 173 ALQLHGFVVKGGFV-----------QDVYVGTSLIDFYAKRGYVDEARLIFDGLKVKTTV 221
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+W A++AGYA G E L ++M + D+ P+ +S VL+AC+ ++ ++ GK IHG
Sbjct: 222 TWTAIIAGYAKLGRSEVSLKLFNQMR--EGDVYPDRYVISSVLSACSMLEFLEGGKQIHG 279
Query: 223 YVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
YVLR + + C V +FN+L +DVV W ++I+ +++ D
Sbjct: 280 YVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGD 339
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALID 320
A+DL +++ KP+ SVL +C L AL +G + FV N LID
Sbjct: 340 AMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLID 399
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
MY +C ++ +RK+F L+ N+VS+N MI Y
Sbjct: 400 MYAKCDSLTNARKVFDLVAAINVVSYNAMIEGY 432
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 162/345 (46%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ ++ + ++LF M+ KG +PD F C V +C L+ + G+ V+ Y
Sbjct: 323 SWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYA 382
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + + + VK L+D+ YAKC L +
Sbjct: 383 IKVNIDNDDFVKNGLIDM------------------------------YAKCDSLTNARK 412
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + ++VS+NAM+ GY+ E +L EM + + P ++ +L + +
Sbjct: 413 VFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREMRLSLS--PPTLLTFVSLLGLSSSL 470
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVI------CSCS-----VFNQLSTRDVVVWNSII 260
++L IH +++ + L + G + CSC VF ++ RD+VVWN++
Sbjct: 471 FLLELSSQIHCLIIKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWNAMF 530
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLG 309
S + + + ++L L +D+ ++ +KPN T +V+ A +A+L GL
Sbjct: 531 SGYSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQFHNQVIKMGLD 590
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
FV N+L+DMY +CG+I++S K F +++ WN MIS Y
Sbjct: 591 DDPFVTNSLVDMYAKCGSIEESHKAFSSTNQRDIACWNSMISTYA 635
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 88/344 (25%), Positives = 161/344 (46%), Gaps = 54/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WT+++ Y LG E + LF M + V PD +V V ACS L+ GK ++ Y+
Sbjct: 222 TWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLSACSMLEFLEGGKQIHGYV 281
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F+ + V ++D ++KC +++ LF N L+D
Sbjct: 282 LRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLF----------NRLVD------------- 318
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
KD+VSW M+AG F + +L +EM++ +P+ + VL +C +
Sbjct: 319 -------KDVVSWTTMIAGCMQNSFHGDAMDLF--VEMVRKGWKPDAFGCTSVLNSCGSL 369
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ ++ G+ +H Y ++ + I + C + + VF+ ++ +VV +N++I
Sbjct: 370 QALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSYNAMI 429
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLG 309
+ R ++V+ALDL R++ ++ P +T VS+L L + G+
Sbjct: 430 EGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSLLGLSSSLFLLELSSQIHCLIIKFGVS 489
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
SF +ALID+Y +C + +R +F + +++V WN M S Y
Sbjct: 490 LDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSGY 533
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 116/247 (46%), Gaps = 25/247 (10%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D ++LID Y+KC + + F +I +D+V WNAM +GY+ EE L +++
Sbjct: 491 DSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSGYSQQLENEESLKLYKDLQ 550
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-----------HHIHLSTACGF 237
M + ++PN + + V+AA + + ++ G+ H V++ + + CG
Sbjct: 551 M--SRLKPNEFTFAAVIAAASNIASLRHGQQFHNQVIKMGLDDDPFVTNSLVDMYAKCGS 608
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ S F+ + RD+ WNS+IS + + G AL++ +I+ VKPN VT V +L A
Sbjct: 609 IEESHKAFSSTNQRDIACWNSMISTYAQHGDAAKALEVFERMIMEGVKPNYVTFVGLLSA 668
Query: 298 CLKLAALPQGL----GTGSFVWNALIDMY-------GRCGAIQKSRKIFVLMPHKN-LVS 345
C L G F ID Y GR G I ++++ MP K V
Sbjct: 669 CSHAGLLDLGFHHFESMSKFGIEPGIDHYACMVSLLGRAGKIYEAKEFVKKMPIKPAAVV 728
Query: 346 WNVMISV 352
W ++S
Sbjct: 729 WRSLLSA 735
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 104/391 (26%), Positives = 187/391 (47%), Gaps = 48/391 (12%)
Query: 6 QVHAHLIVCGVEL-----------CAFLGS--------QLLEV--FCNWTSMMGMYNVLG 44
Q+HAHL+ L CAF S QLL+ +W + + +
Sbjct: 33 QLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEGD 92
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
+ ++LFY + + + PDH+ C V KACS L D R GK V+ Y+ + + N ++
Sbjct: 93 SPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQN 152
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
++ L+ CG + + +F++M Q D + N +I K + ++ F+++ ++++ S
Sbjct: 153 MIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRS 212
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
W +M+ GYA G +E +L EME + PN +++ VL ACA + + LG+ IH +
Sbjct: 213 WTSMIGGYAQCGKSKEAIDLFLEME--DAGLLPNEVTVVAVLVACADMGNLVLGRRIHDF 270
Query: 224 VLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
R I + CG + +C +F+ + R VV W+++I+ G+ DA
Sbjct: 271 SNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDA 330
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNALID 320
L L +I VKPN VT + +L AC + + +G + + + ++D
Sbjct: 331 LALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVD 390
Query: 321 MYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
++ R G +Q++ + + MP N V W ++
Sbjct: 391 LFSRAGLLQEAHEFIMNMPIAPNGVVWGALL 421
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 113/252 (44%), Gaps = 55/252 (21%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + ++ WN L +A G + +L + + D+ P+ + S VL AC+++
Sbjct: 70 FQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLR--EFDISPDHYTCSFVLKACSRLL 127
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWN---- 257
V+ GK +HGYV + +HL CG + + VF+++ RDV+ WN
Sbjct: 128 DVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIA 187
Query: 258 ---------------------------SIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
S+I + + G+ +A+DL ++ A + PN VT
Sbjct: 188 RLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVT 247
Query: 291 IVSVLPACLKLAALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMP 339
+V+VL AC + L G F V N LIDMY +CG ++ + +IF M
Sbjct: 248 VVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNME 307
Query: 340 HKNLVSWNVMIS 351
+ +VSW+ MI+
Sbjct: 308 ERTVVSWSAMIA 319
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 22/156 (14%)
Query: 218 KAIHGYVLRHHIHLSTACGFVICSCSVFNQ-----------LSTRDVVVWNSIISAFVRS 266
K +H ++L+ + LS+ + S FN L +V WN+ + +F
Sbjct: 32 KQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEG 91
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVW 315
DA+ L + ++ P+ T VL AC +L + G L + F+
Sbjct: 92 DSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQ 151
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
N ++ +Y CG I +RK+F MP +++++WN+MI+
Sbjct: 152 NMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIA 187
>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Glycine max]
Length = 705
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 107/395 (27%), Positives = 183/395 (46%), Gaps = 75/395 (18%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVF--CN-------------------WTSMMGMYN 41
LG +H LI G+ + +GS L+ ++ CN W +++ Y
Sbjct: 124 LGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYY 183
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G +++ + F LM G P+ +C+ L D G ++++ +I+ F
Sbjct: 184 QSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGF----- 238
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
LLD FI +++L+D Y KC +L+++ F ++ +K +
Sbjct: 239 ----LLDSFI---------------------SSALVDMYGKCGHLEMAIEIFEQMPKKTV 273
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
V+WN+M++GY L G L M ++P +LS ++ C++ + GK +H
Sbjct: 274 VAWNSMISGYGLKGDIISCIQLFKRM--YNEGVKPTLTTLSSLIMVCSRSARLLEGKFVH 331
Query: 222 GYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
GY +R+ I L CG V + +F + VV WN +IS +V G++
Sbjct: 332 GYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLF 391
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALI 319
+AL L ++ + V+ + +T SVL AC +LAAL +G L V AL+
Sbjct: 392 EALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALL 451
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
DMY +CGA+ ++ +F +P ++LVSW MI+ YG
Sbjct: 452 DMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYG 486
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/348 (27%), Positives = 164/348 (47%), Gaps = 63/348 (18%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M Y Y E + LF ++ ++PD + P V+KAC L Y +GK ++
Sbjct: 73 WNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYVLGKMIH--- 129
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
C+ IK G M D +V +SL+ Y KC + +
Sbjct: 130 --------TCL--------IKTGLM-----------MDIVVGSSLVGMYGKCNAFEKAIW 162
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME----MIQTDMQPNTISLSGVLAA 207
F+++ +KD+ WN +++ Y G N D +E M + +PN+++++ +++
Sbjct: 163 LFNEMPEKDVACWNTVISCYYQSG------NFKDALEYFGLMRRFGFEPNSVTITTAISS 216
Query: 208 CAQVKGVKLGKAIH------GYVLRHHIH-----LSTACGFVICSCSVFNQLSTRDVVVW 256
CA++ + G IH G++L I + CG + + +F Q+ + VV W
Sbjct: 217 CARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAW 276
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG--------- 307
NS+IS + G ++ + L + + VKP T+ S++ C + A L +G
Sbjct: 277 NSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIR 336
Query: 308 --LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ FV ++L+D+Y +CG ++ + KIF L+P +VSWNVMIS Y
Sbjct: 337 NRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMISGY 384
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/381 (25%), Positives = 164/381 (43%), Gaps = 76/381 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G+++H LI G L +F+ S L++++ W SM+ Y +
Sbjct: 226 GMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGL 285
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G + LF M ++GV+P + CS GK V+ Y I + +
Sbjct: 286 KGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQ----- 340
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
D VN+SL+D Y KC ++++ F I + +V
Sbjct: 341 -------------------------PDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVV 375
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SWN M++GY G E L EM ++ ++ + I+ + VL AC+Q+ ++ GK IH
Sbjct: 376 SWNVMISGYVAEGKLFEALGLFSEMR--KSYVESDAITFTSVLTACSQLAALEKGKEIHN 433
Query: 223 YVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
++ + + CG V + SVF L RD+V W S+I+A+ G
Sbjct: 434 LIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGHAYG 493
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------LGTGSFV--WNALI 319
AL+L +++ +NVKP+ V +++L AC + +G G V ++ LI
Sbjct: 494 ALELFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYYFNQMINVYGIIPRVEHYSCLI 553
Query: 320 DMYGRCGAIQKSRKIFVLMPH 340
D+ GR G + ++ +I P
Sbjct: 554 DLLGRAGRLHEAYEILQQNPE 574
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 128/252 (50%), Gaps = 24/252 (9%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS-WNAMLAGYALGGFREEVTNLL 184
+ D + +LI+ Y C + C F ++ +S WN ++AGY E L
Sbjct: 34 LQNDIFLCKTLINQYLSCHLYDHAKCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELF 93
Query: 185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVIC---- 240
+++ + ++P++ + V AC + LGK IH +++ + + G +
Sbjct: 94 EKL-LHYPYLKPDSYTYPSVFKACGGLHRYVLGKMIHTCLIKTGLMMDIVVGSSLVGMYG 152
Query: 241 SCS-------VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
C+ +FN++ +DV WN++IS + +SG DAL+ + +PN+VTI +
Sbjct: 153 KCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITT 212
Query: 294 VLPACLKLAALPQGL-------GTG----SFVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
+ +C +L L +G+ +G SF+ +AL+DMYG+CG ++ + +IF MP K
Sbjct: 213 AISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKT 272
Query: 343 LVSWNVMISVYG 354
+V+WN MIS YG
Sbjct: 273 VVAWNSMISGYG 284
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 24/181 (13%)
Query: 197 NTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTACGFVICSCSVF------- 245
+T L +L AC K +K GK IH V L++ I L SC ++
Sbjct: 2 DTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVF 61
Query: 246 -NQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVLPAC----- 298
N + ++ +WN +++ + ++ V+AL+L ++ +KP++ T SV AC
Sbjct: 62 DNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHR 121
Query: 299 ------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+ + GL V ++L+ MYG+C A +K+ +F MP K++ WN +IS
Sbjct: 122 YVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISC 181
Query: 353 Y 353
Y
Sbjct: 182 Y 182
>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
Length = 746
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 103/392 (26%), Positives = 187/392 (47%), Gaps = 75/392 (19%)
Query: 6 QVHAHLIVCGVELCAFLGSQLL-------EVFCN--------------WTSMMGMYNVLG 44
Q++A L+V G++ FL ++L+ EV C W +++ Y+ G
Sbjct: 93 QIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHG 152
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
++ + ++ M V PD F P V KACS L +G+ V+ + FE
Sbjct: 153 FFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFE------- 205
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
D V N L+ YAKC + ++ F ++ + +VSW
Sbjct: 206 -----------------------SDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSW 242
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
++++GYA G E + EM +T+++P+ I+L VL A V+ ++ GK+IHG V
Sbjct: 243 TSIISGYAQNGQPIEALRIFSEMR--KTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCV 300
Query: 225 LRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
++ + L CG V+ + FNQ+ ++ WN++IS +V++G +A+
Sbjct: 301 IKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAI 360
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALP------QGLGTGSF-----VWNALIDMY 322
+L R + N++P+++T+ S + AC ++ +L + + F V +LID Y
Sbjct: 361 ELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTY 420
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+CG++ +R +F +P K++V W+ M+ YG
Sbjct: 421 AKCGSVDMARFVFDRIPDKDVVVWSAMMVGYG 452
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 98/396 (24%), Positives = 182/396 (45%), Gaps = 76/396 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E+G +VH + G E F+ + L+ ++ +WTS++
Sbjct: 189 LEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISG 248
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G E + +F M VRPD V +A ++++D GK ++
Sbjct: 249 YAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIH----------- 297
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
CV I GL E + D L+ SL YAKC ++ V+ F++++
Sbjct: 298 GCV---------------IKMGL--ECEFDLLI--SLTSLYAKCGHVMVARLFFNQVENP 338
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
L+ WNAM++GY G+ EE L M+ +++P++I+++ +AACAQ+ ++L +
Sbjct: 339 SLIFWNAMISGYVKNGYAEEAIELFRLMK--SKNIRPDSITVTSSIAACAQIGSLELARW 396
Query: 220 IHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+ Y+ R+ + ++T+ CG V + VF+++ +DVVVW++++ + GQ
Sbjct: 397 MDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQ 456
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNA 317
+++ L + A V PN VT V +L AC + + G+ +
Sbjct: 457 GRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRDYGIEPRHQHYAC 516
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMISV 352
++D+ GR G + ++ + MP + VS W ++S
Sbjct: 517 VVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSA 552
>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
Length = 680
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 109/398 (27%), Positives = 191/398 (47%), Gaps = 79/398 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
++ G ++H + G + F+G+ LL + N W S++G+
Sbjct: 23 VQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDVKRVFDEMLERDVVSWNSVIGV 82
Query: 40 YNVLGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
++V G+Y E ++LF M + G RP+ V C+ L+D G+ ++ Y++
Sbjct: 83 FSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAGLEDGVTGRQIHCYVV------ 136
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
K G +D V N+L+D Y KC Y+K S F +I +
Sbjct: 137 -------------KTG-----------LDSQVTVGNALVDVYGKCGYVKDSRRVFDEISE 172
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEME-MIQTDMQPNTISLSGVLAACAQVKGVKLG 217
++ VSWNA++ A + E + L+ MI ++PN+++ S +L ++K G
Sbjct: 173 RNGVSWNAIITSLA---YLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFG 229
Query: 218 KAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
K IHG+ LR I + G + + +VFNQ+ +++V WN++++ F ++
Sbjct: 230 KEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQN 289
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGS----FVW 315
+ A+DL+R + PN+VT +VLPAC ++ L G + TGS FV
Sbjct: 290 RLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVS 349
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
NAL DMY +CG + +R++F + ++ VS+N++I Y
Sbjct: 350 NALTDMYAKCGCLNLARRVFKI-SLRDEVSYNILIIGY 386
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 158/316 (50%), Gaps = 53/316 (16%)
Query: 60 GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEIT 119
GVR D P V KAC++ + G++++ + + F
Sbjct: 2 GVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGF----------------------- 38
Query: 120 SGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREE 179
D D V N+L+ FY C LK F ++ ++D+VSWN+++ +++ GF E
Sbjct: 39 -------DSDVFVGNTLLLFYGNCGGLKDVKRVFDEMLERDVVSWNSVIGVFSVHGFYAE 91
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTA- 234
+L EM + ++ +PN +S+ VL CA ++ G+ IH YV++ + + A
Sbjct: 92 AIHLFCEMNL-RSGFRPNMVSIVSVLPVCAGLEDGVTGRQIHCYVVKTGLDSQVTVGNAL 150
Query: 235 ------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288
CG+V S VF+++S R+ V WN+II++ + DAL++ R +I VKPN+
Sbjct: 151 VDVYGKCGYVKDSRRVFDEISERNGVSWNAIITSLAYLERNQDALEMFRLMIDGGVKPNS 210
Query: 289 VTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVL 337
VT S+LP ++L +L GL + FV NALIDMY + G ++ +F
Sbjct: 211 VTFSSMLPVLVELKLFDFGKEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVFNQ 270
Query: 338 MPHKNLVSWNVMISVY 353
+ KN+VSWN M++ +
Sbjct: 271 IGEKNIVSWNAMVANF 286
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 107/395 (27%), Positives = 189/395 (47%), Gaps = 78/395 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNV 42
G Q+H +++ G++ +G+ L++V+ +W +++
Sbjct: 128 GRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAIITSLAY 187
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
L ++ + +F LMID GV+P+ + ELK + GK+++ + S++F
Sbjct: 188 LERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGF--SLRFG----- 240
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKC-RYLKVSHCKFSKIKQKDL 161
++ D V N+LID YAK R L+ S+ F++I +K++
Sbjct: 241 -----------------------LESDIFVANALIDMYAKSGRSLQASNV-FNQIGEKNI 276
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ-PNTISLSGVLAACAQVKGVKLGKAI 220
VSWNAM+A +A +L+ +M Q D + PN+++ + VL ACA++ ++ GK I
Sbjct: 277 VSWNAMVANFAQNRLELAAVDLVRQM---QADGEIPNSVTFTNVLPACARIGFLRPGKEI 333
Query: 221 HGYVLRH----HIHLSTACGFVICSCSVFN------QLSTRDVVVWNSIISAFVRSGQVV 270
H +R + +S A + C N ++S RD V +N +I + ++
Sbjct: 334 HARAIRTGSSVDLFVSNALTDMYAKCGCLNLARRVFKISLRDEVSYNILIIGYSQTTNCS 393
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALI 319
++L L ++ + +K + V+ + V+ AC LAAL QG L T F+ NAL+
Sbjct: 394 ESLRLFLEMGIKGMKLDVVSYMGVISACANLAALKQGKEVHGLAVRKHLHTHLFIANALL 453
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
D Y +CG I + K+F +P ++ SWN MI YG
Sbjct: 454 DFYIKCGRIDLAGKVFRQIPSRDTASWNSMILGYG 488
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/381 (22%), Positives = 160/381 (41%), Gaps = 76/381 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
+ G ++H + G+E F+ + L++++ +W +M+ +
Sbjct: 227 DFGKEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANF 286
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
V+L M G P+ V AC+ + R GK+++ I G++
Sbjct: 287 AQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFLRPGKEIHARAIRT---GSS 343
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
D V+N+L D YAKC L ++ F KI +D
Sbjct: 344 V---------------------------DLFVSNALTDMYAKCGCLNLARRVF-KISLRD 375
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
VS+N ++ GY+ E L +EM M+ + +S GV++ACA + +K GK +
Sbjct: 376 EVSYNILIIGYSQTTNCSESLRLF--LEMGIKGMKLDVVSYMGVISACANLAALKQGKEV 433
Query: 221 HGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
HG +R H+H CG + + VF Q+ +RD WNS+I + G++
Sbjct: 434 HGLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVFRQIPSRDTASWNSMILGYGMLGEL 493
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNAL 318
A++L + V+ ++V+ ++VL AC + +G + + +
Sbjct: 494 TIAINLFEAMKEDGVEYDSVSYIAVLSACSHGGLVEEGKKYFEHMQVQNIKPTQMHYACM 553
Query: 319 IDMYGRCGAIQKSRKIFVLMP 339
+D+ GR G I+++ K+ +P
Sbjct: 554 VDLLGRAGLIEEAVKLIESLP 574
>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
[Vitis vinifera]
Length = 785
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 103/397 (25%), Positives = 184/397 (46%), Gaps = 74/397 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+E G+++H+H + G+E F+ + L++ + W +M+
Sbjct: 125 IEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAG 184
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
++ G ++ V L M ++G+ P+ V E K GK ++ Y
Sbjct: 185 CSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGY--------- 235
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
CV+R D +V L+D YAKC+ L + F + +
Sbjct: 236 -CVRRSF--------------------DNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVR 274
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+ VSW+AM+ GY +E L D+M +++ M P ++L VL ACA++ + G+
Sbjct: 275 NEVSWSAMIGGYVASDCMKEALELFDQM-ILKDAMDPTPVTLGSVLRACAKLTDLSRGRK 333
Query: 220 IHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H Y+++ + + CG + + F++++ +D V +++I+S V++G
Sbjct: 334 LHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGN 393
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNA 317
AL + R + ++ + P+ T++ VLPAC LAAL +G T + + NA
Sbjct: 394 AAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNA 453
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
LIDMY +CG I +R++F M ++VSWN MI YG
Sbjct: 454 LIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYG 490
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 94/342 (27%), Positives = 160/342 (46%), Gaps = 55/342 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W ++ Y G ++ ++L++ M+ GVRP+ + P V KACS L G +++ +
Sbjct: 77 WNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAK 136
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
E + V L+D + KCG + LF M
Sbjct: 137 MFGLESDVFVCTALVDFYAKCGILVEAQRLFSSM-------------------------- 170
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
+D+V+WNAM+AG +L G ++ L+ M+M + + PN+ ++ GVL + K
Sbjct: 171 ----SHRDVVAWNAMIAGCSLYGLCDDAVQLI--MQMQEEGICPNSSTIVGVLPTVGEAK 224
Query: 213 GVKLGKAIHGYVLRHHIHLSTACG------FVICSC-----SVFNQLSTRDVVVWNSIIS 261
+ GKA+HGY +R G + C C +F+ + R+ V W+++I
Sbjct: 225 ALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIG 284
Query: 262 AFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPACLKLAALPQG-------LGTGS- 312
+V S + +AL+L +I+ + + P VT+ SVL AC KL L +G + GS
Sbjct: 285 GYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSV 344
Query: 313 ---FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ N L+ MY +CG I + + F M K+ VS++ ++S
Sbjct: 345 LDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVS 386
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 120/261 (45%), Gaps = 33/261 (12%)
Query: 124 EEMDQDFLVNNS---------LIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALG 174
+++ Q FL N S L Y C + ++ F +I ++ WN ++ YA
Sbjct: 28 KKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWN 87
Query: 175 GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIH 230
G + +L M+ ++PN + VL AC+ + ++ G IH + L +
Sbjct: 88 GPFDGAIDLYH--SMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVF 145
Query: 231 LSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283
+ TA CG ++ + +F+ +S RDVV WN++I+ G DA+ L+ +
Sbjct: 146 VCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEG 205
Query: 284 VKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSR 332
+ PN+ TIV VLP + AL G G V L+DMY +C + +R
Sbjct: 206 ICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYAR 265
Query: 333 KIFVLMPHKNLVSWNVMISVY 353
KIF +M +N VSW+ MI Y
Sbjct: 266 KIFDVMGVRNEVSWSAMIGGY 286
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 155/346 (44%), Gaps = 57/346 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-GVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W++M+G Y +E + LF MI K + P V +AC++L D G+ ++ Y
Sbjct: 278 SWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCY 337
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+I K G + D L+ N+L+ YAKC + +
Sbjct: 338 II-------------------KLGSV-----------LDILLGNTLLSMYAKCGVIDDAI 367
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ KD VS++A+++G G ++ M++ D P+ ++ GVL AC+
Sbjct: 368 RFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGID--PDLTTMLGVLPACSH 425
Query: 211 VKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ ++ G HGY++ I + + CG + + VFN++ D+V WN++
Sbjct: 426 LAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAM 485
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC----------LKLAALPQGLG 309
I + G ++AL L D++ +KP+ +T + +L +C L A+ +
Sbjct: 486 IIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFS 545
Query: 310 TGSFVWN--ALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMISV 352
+ + ++D+ GR G I ++ MP + V W+ ++S
Sbjct: 546 IVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSA 591
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 25/176 (14%)
Query: 204 VLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRD 252
+L AC Q K + K IH + L++ L +C V+ + +F+++
Sbjct: 14 LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------ 306
V++WN II A+ +G A+DL ++ V+PN T VL AC L A+
Sbjct: 74 VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133
Query: 307 -----GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI---SVYG 354
GL + FV AL+D Y +CG + +++++F M H+++V+WN MI S+YG
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYG 189
>gi|255569195|ref|XP_002525566.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535145|gb|EEF36825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 563
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 102/399 (25%), Positives = 180/399 (45%), Gaps = 79/399 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+ G ++H LI G F + ++ ++C W +++
Sbjct: 158 LRRGKEIHGQLITSGFSWNLFAMTAVVSLYCKCRVIGDAYKMFDRMTERDLVCWNTIISG 217
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G + + L + ++G RPD V A ++++ R GK ++ Y+I F
Sbjct: 218 YAQNGLTKVALELVPKIFEEGHRPDSVTIVSVLPAVADIRSLRFGKAIHAYVIRAGF--- 274
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN--NSLIDFYAKCRYLKVSHCKFSKIK 157
D+LVN +L+D Y+KC L + F +
Sbjct: 275 -----------------------------DWLVNISTALVDMYSKCDSLGTARVIFDGMG 305
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+ +V+WN+M+AG G EE L +M + +QP +++ VL ACA ++ G
Sbjct: 306 SRTVVTWNSMIAGCVENGDPEEAKVLFKKM--MDEGLQPTDVTVMEVLHACADSGDLEQG 363
Query: 218 KAIHGYV-----------LRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
K +H V + I + + C V + ++F L R +V WN++I + ++
Sbjct: 364 KFVHKLVEDLKLDSNVSVMNSLISMYSKCKQVDFAANLFENLQNRTLVSWNAMILGYAQN 423
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVW 315
G++ +AL+ ++ N+KP++ T+VSV+PA +L+ Q L FV
Sbjct: 424 GRLNEALNFFCEMQSQNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRLLDDTVFVM 483
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
AL+DMY +CGAI +RK+F +M +++++WN MI YG
Sbjct: 484 TALVDMYAKCGAIHTARKLFNMMSERHVITWNSMIDAYG 522
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 171/392 (43%), Gaps = 75/392 (19%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH 65
Q+ +I G ++L+ +FCN+ S+ V E + Y + KG +
Sbjct: 62 QIIPSIIKNGFYSEELFQTKLISLFCNYGSLTEAARVFEPIENKLEALYHTMLKGFAKNS 121
Query: 66 -------FVC--------PKVYK------ACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
F C P VY C + D R GK+++ +I+ F N
Sbjct: 122 SLDSALLFFCRMKHDNVRPVVYNFTYLLTLCGDNFDLRRGKEIHGQLITSGFSWN----- 176
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
+++ Y KCR + ++ F ++ ++DLV W
Sbjct: 177 -------------------------LFAMTAVVSLYCKCRVIGDAYKMFDRMTERDLVCW 211
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
N +++GYA G + L+ ++ + +P+++++ VL A A ++ ++ GKAIH YV
Sbjct: 212 NTIISGYAQNGLTKVALELVP--KIFEEGHRPDSVTIVSVLPAVADIRSLRFGKAIHAYV 269
Query: 225 LRHH----IHLSTACGFVICSCS-------VFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
+R +++STA + C +F+ + +R VV WNS+I+ V +G +A
Sbjct: 270 IRAGFDWLVNISTALVDMYSKCDSLGTARVIFDGMGSRTVVTWNSMIAGCVENGDPEEAK 329
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMY 322
L + ++ ++P VT++ VL AC L QG L + V N+LI MY
Sbjct: 330 VLFKKMMDEGLQPTDVTVMEVLHACADSGDLEQGKFVHKLVEDLKLDSNVSVMNSLISMY 389
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+C + + +F + ++ LVSWN MI Y
Sbjct: 390 SKCKQVDFAANLFENLQNRTLVSWNAMILGYA 421
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 85/330 (25%), Positives = 144/330 (43%), Gaps = 64/330 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ G +HA++I G + + + L++++ W SM+
Sbjct: 259 LRFGKAIHAYVIRAGFDWLVNISTALVDMYSKCDSLGTARVIFDGMGSRTVVTWNSMIAG 318
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
G EE LF M+D+G++P +V AC++ D GK V+ + +K + N
Sbjct: 319 CVENGDPEEAKVLFKKMMDEGLQPTDVTVMEVLHACADSGDLEQGKFVHKLVEDLKLDSN 378
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V NSLI Y+KC+ + + F ++ +
Sbjct: 379 VSVM------------------------------NSLISMYSKCKQVDFAANLFENLQNR 408
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
LVSWNAM+ GYA G E N EM+ +++P++ ++ V+ A A++ + K
Sbjct: 409 TLVSWNAMILGYAQNGRLNEALNFFCEMQ--SQNIKPDSFTMVSVIPALAELSIPRQAKW 466
Query: 220 IHGYVLRH-----------HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IHG V+R + + CG + + +FN +S R V+ WNS+I A+ G
Sbjct: 467 IHGLVIRRLLDDTVFVMTALVDMYAKCGAIHTARKLFNMMSERHVITWNSMIDAYGTHGL 526
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+A+ L ++ +KPN VT + VL AC
Sbjct: 527 GKEAVQLFVEMQKGTIKPNDVTFLCVLSAC 556
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 32/179 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G E +N F M + ++PD F V A +EL R K ++ +
Sbjct: 412 SWNAMILGYAQNGRLNEALNFFCEMQSQNIKPDSFTMVSVIPALAELSIPRQAKWIHGLV 471
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I R LLD V +L+D YAKC + +
Sbjct: 472 I-----------RRLLD-------------------DTVFVMTALVDMYAKCGAIHTARK 501
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F+ + ++ +++WN+M+ Y G +E L EM+ + ++PN ++ VL+AC+
Sbjct: 502 LFNMMSERHVITWNSMIDAYGTHGLGKEAVQLFVEMQ--KGTIKPNDVTFLCVLSACSH 558
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 104/391 (26%), Positives = 187/391 (47%), Gaps = 48/391 (12%)
Query: 6 QVHAHLIVCGVEL-----------CAFLGS--------QLLEV--FCNWTSMMGMYNVLG 44
Q+HAHL+ L CAF S QLL+ +W + + +
Sbjct: 33 QLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEGD 92
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
+ ++LFY + + + PDH+ C V KACS L D R GK V+ Y+ + + N ++
Sbjct: 93 SPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQN 152
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
++ L+ CG + + +F++M Q D + N +I K + ++ F+++ ++++ S
Sbjct: 153 MIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRS 212
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
W +M+ GYA G +E +L EME + PN +++ VL ACA + + LG+ IH +
Sbjct: 213 WTSMIGGYAQCGKSKEAIDLFLEME--DAGLLPNEVTVVAVLVACADMGNLVLGRRIHDF 270
Query: 224 VLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
R I + CG + +C +F+ + R VV W+++I+ G+ DA
Sbjct: 271 SNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDA 330
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNALID 320
L L +I VKPN VT + +L AC + + +G + + + ++D
Sbjct: 331 LALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVD 390
Query: 321 MYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
++ R G +Q++ + + MP N V W ++
Sbjct: 391 LFSRAGLLQEAHEFIMNMPIAPNGVVWGALL 421
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 113/252 (44%), Gaps = 55/252 (21%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + ++ WN L +A G + +L + + D+ P+ + S VL AC+++
Sbjct: 70 FQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLR--EFDISPDHYTCSFVLKACSRLL 127
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWN---- 257
V+ GK +HGYV + +HL CG + + VF+++ RDV+ WN
Sbjct: 128 DVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIA 187
Query: 258 ---------------------------SIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
S+I + + G+ +A+DL ++ A + PN VT
Sbjct: 188 RLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVT 247
Query: 291 IVSVLPACLKLAALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMP 339
+V+VL AC + L G F V N LIDMY +CG ++ + +IF M
Sbjct: 248 VVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNME 307
Query: 340 HKNLVSWNVMIS 351
+ +VSW+ MI+
Sbjct: 308 ERTVVSWSAMIA 319
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 22/156 (14%)
Query: 218 KAIHGYVLRHHIHLSTACGFVICSCSVFNQ-----------LSTRDVVVWNSIISAFVRS 266
K +H ++L+ + LS+ + S FN L +V WN+ + +F
Sbjct: 32 KQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEG 91
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVW 315
DA+ L + ++ P+ T VL AC +L + G L + F+
Sbjct: 92 DSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQ 151
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
N ++ +Y CG I +RK+F MP +++++WN+MI+
Sbjct: 152 NMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIA 187
>gi|255563405|ref|XP_002522705.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538055|gb|EEF39667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 501
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 103/392 (26%), Positives = 183/392 (46%), Gaps = 74/392 (18%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEE----------------- 48
Q+HA L V ++ FL ++L+ + NV YY +
Sbjct: 64 QIHAQLFVSRLQYNGFLITKLVNCCATLGEIRYARNVFDYYPDPDVFLWNAIIRCYTRQN 123
Query: 49 ----IVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
+ ++ M +RPD F P V KAC+ S+ F
Sbjct: 124 LFCNAIEMYARMQIACIRPDGFTFPLVLKACTA---------------SLAF-------- 160
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
LD+ GR ++ D V N L+ FYAKCR + +++ F ++ + +VSW
Sbjct: 161 --LDI----GRRVHGQAFRHGLEADVFVQNGLVTFYAKCRKISLANIVFGRLSDRSIVSW 214
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
++++GYA G E + ++M + +++P+ I+L VL A V+ ++ GK+IHG V
Sbjct: 215 TSIISGYAQNGQPIEALRIFNQMR--EVNVKPDQIALVSVLRAYTDVEDLEHGKSIHGCV 272
Query: 225 LRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
++ + CG V+ + F+Q+ ++++WN++IS + ++G +AL
Sbjct: 273 IKMGLEFEIDLLISLTAMYAKCGQVMFARLFFDQVRIPNLILWNAMISGYAKNGYAEEAL 332
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMY 322
+L R +I N P+++TI SV+ AC ++ +L +FV +ALIDM+
Sbjct: 333 ELFRRMITMNFGPDSITITSVILACAQMGSLELARWMSDYIGRSEFRNDAFVSSALIDMF 392
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+CG++ +R +F K++V W+ MI YG
Sbjct: 393 SKCGSVDLARDVFDRALDKDVVLWSSMIMGYG 424
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 148/329 (44%), Gaps = 65/329 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+++G +VH G+E F+ + L+ + +WTS++
Sbjct: 161 LDIGRRVHGQAFRHGLEADVFVQNGLVTFYAKCRKISLANIVFGRLSDRSIVSWTSIISG 220
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G E + +F M + V+PD V +A ++++D GK ++
Sbjct: 221 YAQNGQPIEALRIFNQMREVNVKPDQIALVSVLRAYTDVEDLEHGKSIH----------- 269
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
CV I GL E + D L+ SL YAKC + + F +++
Sbjct: 270 GCV---------------IKMGL--EFEIDLLI--SLTAMYAKCGQVMFARLFFDQVRIP 310
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+L+ WNAM++GYA G+ EE L MI + P++I+++ V+ ACAQ+ ++L +
Sbjct: 311 NLILWNAMISGYAKNGYAEEALELF--RRMITMNFGPDSITITSVILACAQMGSLELARW 368
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+ Y+ R I + + CG V + VF++ +DVV+W+S+I + G+
Sbjct: 369 MSDYIGRSEFRNDAFVSSALIDMFSKCGSVDLARDVFDRALDKDVVLWSSMIMGYGLHGR 428
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPA 297
++++L + A + P + I+ + P
Sbjct: 429 GQESINLFEAMRQAGI-PLQLRILLLDPG 456
>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 849
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 164/344 (47%), Gaps = 54/344 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +++ Y G+ + + L M ++G RPD + A +++ R+G+ ++ Y +
Sbjct: 244 WNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSM 303
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
FE F+ V+ +L+D Y+KC + +
Sbjct: 304 RAGFES-----------FVN-------------------VSTALVDMYSKCGSVGTARLI 333
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ K +VSWN+M+ GY G + +M Q +M +++ G L ACA +
Sbjct: 334 FDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEM--TNVTVMGALHACADLG 391
Query: 213 GVKLGKAIHGY-----------VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
V+ G+ +H V+ I + + C V + +F L + +V WN++I
Sbjct: 392 DVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMIL 451
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGT 310
+ ++G++ +A+D + + N+KP++ T+VSV+PA +L+ LPQ L
Sbjct: 452 GYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDK 511
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
FV AL+DMY +CGA+ +RK+F +M +++ +WN MI YG
Sbjct: 512 NVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYG 555
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 166/344 (48%), Gaps = 54/344 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
+ +M+ Y ++ V+ F M GVRP + + K C + D R GK+++ +I
Sbjct: 143 YHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLI 202
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F N +++++ KC +E +F+ M
Sbjct: 203 VNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRM-------------------------- 236
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
++DLV WN +++GYA GF + L+ + M + +P++I++ +L A A V
Sbjct: 237 ----PERDLVCWNTIISGYAQNGFGKTALELV--LRMQEEGKRPDSITIVSILPAVADVG 290
Query: 213 GVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIIS 261
+++G++IHGY +R +++STA CG V + +F++++ + VV WNS+I
Sbjct: 291 SLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMID 350
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGT 310
+V++G A+++ + ++ V+ VT++ L AC L + QG LG+
Sbjct: 351 GYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGS 410
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V N+LI MY +C + + +IF + HK LVSWN MI Y
Sbjct: 411 DVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYA 454
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 55/337 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y G + +F M+D+ V + AC++L D G+ V+
Sbjct: 344 SWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHK-- 401
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
LLD E+ D V NSLI Y+KC+ + ++
Sbjct: 402 --------------LLDQL--------------ELGSDVSVMNSLISMYSKCKRVDIAAE 433
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ K LVSWNAM+ GYA G E + +M++ +++P++ ++ V+ A A++
Sbjct: 434 IFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQL--QNIKPDSFTMVSVIPALAEL 491
Query: 212 KGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ K IHG V+R ++ ++TA CG V + +F+ + R V WN++I
Sbjct: 492 SVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMI 551
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GL 308
+ G AL+L + +KPN VT + VL AC + + GL
Sbjct: 552 DGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGL 611
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
+ A++D+ GR + ++ MP + +S
Sbjct: 612 EPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAIS 648
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 121/258 (46%), Gaps = 28/258 (10%)
Query: 118 ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFR 177
I +GL+ E L L+ + K L + F I+ K ++ ML GYA
Sbjct: 101 IKNGLYSE----HLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSL 156
Query: 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH-----------GYVLR 226
++ + M ++P + + +L C ++ GK IH + +
Sbjct: 157 DDAVSFFCRMRY--DGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMT 214
Query: 227 HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286
+++ C V + +F+++ RD+V WN+IIS + ++G AL+L+ + +P
Sbjct: 215 GVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRP 274
Query: 287 NTVTIVSVLPACLKLAALPQG---------LGTGSF--VWNALIDMYGRCGAIQKSRKIF 335
+++TIVS+LPA + +L G G SF V AL+DMY +CG++ +R IF
Sbjct: 275 DSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIF 334
Query: 336 VLMPHKNLVSWNVMISVY 353
M K +VSWN MI Y
Sbjct: 335 DRMTGKTVVSWNSMIDGY 352
>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
Length = 694
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/394 (24%), Positives = 193/394 (48%), Gaps = 77/394 (19%)
Query: 6 QVHAHLIVCGVELCAFLGSQLL-------------EVFCN--------WTSMMGMYNVLG 44
Q+HA L+V G++ FL ++L+ +VF + W +++ Y+
Sbjct: 39 QIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNN 98
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
++++ + ++ M V PD F P + KACS L ++G+ V+ + + F
Sbjct: 99 HFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGF-------- 150
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFS--KIKQKDLV 162
D D V N LI YAKCR L + F + ++ +V
Sbjct: 151 ----------------------DADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIV 188
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW A+++ YA G E + +M + D++P+ ++L VL A ++ +K G++IH
Sbjct: 189 SWTAIVSAYAQNGEPMEALEIFSQMR--KMDVKPDWVALVSVLNAFTCLQDLKQGRSIHA 246
Query: 223 YVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V++ + + CG V + +F+++ + ++++WN++IS + ++G +
Sbjct: 247 SVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYARE 306
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTGS-----FVWNALID 320
A+D+ ++I +V+P+T++I S + AC ++ +L Q +G F+ +ALID
Sbjct: 307 AIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALID 366
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
M+ +CG+++ +R +F +++V W+ MI YG
Sbjct: 367 MFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYG 400
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 98/372 (26%), Positives = 172/372 (46%), Gaps = 56/372 (15%)
Query: 5 IQVHAHLIVCGVELCAFLGSQLLE-VFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRP 63
I ++A G F G L E +WT+++ Y G E + +F M V+P
Sbjct: 161 IALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKP 220
Query: 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLF 123
D V A + L+D + G+ ++ ++ + GL
Sbjct: 221 DWVALVSVLNAFTCLQDLKQGRSIHASVVKM--------------------------GL- 253
Query: 124 EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNL 183
E++ D L+ SL YAKC + + F K+K +L+ WNAM++GYA G+ E ++
Sbjct: 254 -EIEPDLLI--SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDM 310
Query: 184 LDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA----- 234
EM I D++P+TIS++ ++ACAQV ++ ++++ YV R + +S+A
Sbjct: 311 FHEM--INKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMF 368
Query: 235 --CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
CG V + VF++ RDVVVW+++I + G+ +A+ L R + V PN VT +
Sbjct: 369 AKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFL 428
Query: 293 SVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-H 340
+L AC + +G + + +ID+ GR G + ++ ++ MP
Sbjct: 429 GLLMACNHSGMVREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQ 488
Query: 341 KNLVSWNVMISV 352
+ W ++S
Sbjct: 489 PGVTVWGALLSA 500
>gi|224098357|ref|XP_002311156.1| predicted protein [Populus trichocarpa]
gi|222850976|gb|EEE88523.1| predicted protein [Populus trichocarpa]
Length = 535
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 174/345 (50%), Gaps = 55/345 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W++++ + GY +E ++LF M ++G++ + + AC+E+ ++GK ++
Sbjct: 57 WSAIIAAFVQSGYPQEALSLFRSMQNEGLQANKVILLSSLPACAEVSSLKLGKSMH---- 112
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
C + +DL D V +L+ YAKC + ++
Sbjct: 113 -------CCAVKANVDL-------------------DISVGTALVSMYAKCGFFALALTL 146
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+++ KD+V+WNAM+ GYA G + ++++ +++ PN+ ++ G+L A A +
Sbjct: 147 FNRMPCKDVVTWNAMINGYAQIGEPFPALEMFHKLQL--SELNPNSGTMVGLLPAFALLN 204
Query: 213 GVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTR-DVVVWNSII 260
+ G IHG +++ H+ TA CG + + +F++ R D V WN +I
Sbjct: 205 DLDQGSCIHGKIIKCGFESECHVKTALIDMYAKCGSLSGAEFLFHRTGCRKDEVSWNVMI 264
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------- 313
+ ++ SG +DA + + N++PN VTIV+VLPA L+AL G+ ++
Sbjct: 265 AGYMHSGHAIDAFSAFCQMKLENIQPNIVTIVTVLPAVAHLSALRAGMTLHAYVIRMGFQ 324
Query: 314 ----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V N LIDMY +CG + S KIF M +K+ VSWNVM++ Y
Sbjct: 325 SKTPVGNCLIDMYAKCGWLDHSEKIFHEMKNKDTVSWNVMLAGYA 369
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 135/253 (53%), Gaps = 25/253 (9%)
Query: 124 EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNL 183
+ +D D V ++ YA+C + + F +IK +DLV+W+A++A + G+ +E +L
Sbjct: 17 QGIDSDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAIIAAFVQSGYPQEALSL 76
Query: 184 LDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA--------- 234
M+ +Q N + L L ACA+V +KLGK++H ++ ++ L +
Sbjct: 77 FRSMQ--NEGLQANKVILLSSLPACAEVSSLKLGKSMHCCAVKANVDLDISVGTALVSMY 134
Query: 235 --CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
CGF + ++FN++ +DVV WN++I+ + + G+ AL++ + ++ + PN+ T+V
Sbjct: 135 AKCGFFALALTLFNRMPCKDVVTWNAMINGYAQIGEPFPALEMFHKLQLSELNPNSGTMV 194
Query: 293 SVLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-H 340
+LPA L L Q G + V ALIDMY +CG++ + +F
Sbjct: 195 GLLPAFALLNDLDQGSCIHGKIIKCGFESECHVKTALIDMYAKCGSLSGAEFLFHRTGCR 254
Query: 341 KNLVSWNVMISVY 353
K+ VSWNVMI+ Y
Sbjct: 255 KDEVSWNVMIAGY 267
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 124/288 (43%), Gaps = 44/288 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M+ Y +G + +F+ + + P+ + A + L D G ++ +
Sbjct: 157 TWNAMINGYAQIGEPFPALEMFHKLQLSELNPNSGTMVGLLPAFALLNDLDQGSCIHGKI 216
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I FE VK +LID YAKC L +
Sbjct: 217 IKCGFESECHVK------------------------------TALIDMYAKCGSLSGAEF 246
Query: 152 KFSKIK-QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + +KD VSWN M+AGY G + + +M++ ++QPN +++ VL A A
Sbjct: 247 LFHRTGCRKDEVSWNVMIAGYMHSGHAIDAFSAFCQMKL--ENIQPNIVTIVTVLPAVAH 304
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ ++ G +H YV+R T CG++ S +F+++ +D V WN +
Sbjct: 305 LSALRAGMTLHAYVIRMGFQSKTPVGNCLIDMYAKCGWLDHSEKIFHEMKNKDTVSWNVM 364
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
++ + G+ A++L + + ++ ++ + ++VL AC + +G
Sbjct: 365 LAGYAVHGRGSCAIELFSRMQDSEIRLDSFSFINVLSACRHAGLIGEG 412
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 101/250 (40%), Gaps = 54/250 (21%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC----------------------NWTSMMG 38
++ G +H +I CG E + + L++++ +W M+
Sbjct: 206 LDQGSCIHGKIIKCGFESECHVKTALIDMYAKCGSLSGAEFLFHRTGCRKDEVSWNVMIA 265
Query: 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
Y G+ + + F M + ++P+ V A + L R G ++ Y+I + F+
Sbjct: 266 GYMHSGHAIDAFSAFCQMKLENIQPNIVTIVTVLPAVAHLSALRAGMTLHAYVIRMGFQS 325
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
K P V N LID YAKC +L S F ++K
Sbjct: 326 ----KTP--------------------------VGNCLIDMYAKCGWLDHSEKIFHEMKN 355
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
KD VSWN MLAGYA+ G L M+ ++++ ++ S VL+AC + G+
Sbjct: 356 KDTVSWNVMLAGYAVHGRGSCAIELFSRMQ--DSEIRLDSFSFINVLSACRHAGLIGEGR 413
Query: 219 AIHGYVLRHH 228
I + + H
Sbjct: 414 KIFDSMSKQH 423
>gi|225459405|ref|XP_002284293.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Vitis vinifera]
Length = 595
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 110/396 (27%), Positives = 179/396 (45%), Gaps = 76/396 (19%)
Query: 2 ELGIQVHA--------HLIVCGVELC-------------AFLGSQLLEVFCNWTSMMGMY 40
ELG Q+HA +LIV +C AF +V C WT+M+
Sbjct: 181 ELGRQIHACIVKDNWRNLIVDSALVCFYAQCGDLSGAFHAFDQMPERDVVC-WTTMITAC 239
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+ G E +++F M+ P+ F V KAC E K GK ++ +I F+
Sbjct: 240 SQQGRGTEALSMFSQMMFNTSSPNEFTVCSVLKACGEEKALEFGKQLHGAIIKKMFK--- 296
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
+D + SL+ YAKC + S F +K+++
Sbjct: 297 ---------------------------EDVFIGTSLVGMYAKCGEILDSRKVFDGMKKRN 329
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
V+W +++AGYA G EE +L M+ + + N +++ +L AC + + +GK +
Sbjct: 330 TVTWTSIIAGYARNGQGEEAISLFRVMK--RRKIFANNLTVVSILRACGSTRNLLMGKEV 387
Query: 221 HGYVLRH----HIHLSTACGFVICSCS-------VFNQLSTRDVVVWNSIISAFVRSGQV 269
H ++++ +I++ + + C C V + RDVV W +IIS + G
Sbjct: 388 HAQIMKNSMQSNIYIGSTLVWFYCKCEEHPFASKVLQNMPLRDVVSWTAIISGYTSLGHE 447
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNAL 318
+AL+ L++++ V+PN T S L AC L A+ QG S FV +AL
Sbjct: 448 PEALEFLKEMLEEGVEPNPFTYSSALKACAHLEAILQGKLIHSSVNKTLALSNVFVGSAL 507
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
I+MY +CG + ++ ++F MP +NLVSW MI Y
Sbjct: 508 INMYAKCGYVSEAIQVFDSMPQRNLVSWKAMIVGYA 543
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/346 (25%), Positives = 164/346 (47%), Gaps = 59/346 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPD--HFVCPKVYKACSELKDYRVGKDVYD 89
+WT+++ Y+ G+ +E + LF I+ GVR + FVC V CS+ D+ +G+ ++
Sbjct: 131 SWTAVVNGYSRYGFDDEALRLFDDCIENGVRANGKTFVC--VLNLCSKRLDFELGRQIH- 187
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
AC+ ++ ++ +V+++L+ FYA+C L +
Sbjct: 188 ----------ACI--------------------VKDNWRNLIVDSALVCFYAQCGDLSGA 217
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F ++ ++D+V W M+ + G E ++ +M M T PN ++ VL AC
Sbjct: 218 FHAFDQMPERDVVCWTTMITACSQQGRGTEALSMFSQM-MFNTS-SPNEFTVCSVLKACG 275
Query: 210 QVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ K ++ GK +HG +++ + + CG ++ S VF+ + R+ V W S
Sbjct: 276 EEKALEFGKQLHGAIIKKMFKEDVFIGTSLVGMYAKCGEILDSRKVFDGMKKRNTVTWTS 335
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------- 307
II+ + R+GQ +A+ L R + + N +T+VS+L AC L G
Sbjct: 336 IIAGYARNGQGEEAISLFRVMKRRKIFANNLTVVSILRACGSTRNLLMGKEVHAQIMKNS 395
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ + ++ + L+ Y +C + K+ MP +++VSW +IS Y
Sbjct: 396 MQSNIYIGSTLVWFYCKCEEHPFASKVLQNMPLRDVVSWTAIISGY 441
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 122/244 (50%), Gaps = 23/244 (9%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
VNN+LI Y++ L + F K+ ++++VSW A++ GY+ GF +E L D + I+
Sbjct: 100 VNNNLISAYSRFGKLVEARKVFDKMPERNVVSWTAVVNGYSRYGFDDEALRLFD--DCIE 157
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----------IHLSTACGFVICS 241
++ N + VL C++ +LG+ IH +++ + + CG + +
Sbjct: 158 NGVRANGKTFVCVLNLCSKRLDFELGRQIHACIVKDNWRNLIVDSALVCFYAQCGDLSGA 217
Query: 242 CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
F+Q+ RDVV W ++I+A + G+ +AL + ++ PN T+ SVL AC +
Sbjct: 218 FHAFDQMPERDVVCWTTMITACSQQGRGTEALSMFSQMMFNTSSPNEFTVCSVLKACGEE 277
Query: 302 AALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
AL G F+ +L+ MY +CG I SRK+F M +N V+W +I
Sbjct: 278 KALEFGKQLHGAIIKKMFKEDVFIGTSLVGMYAKCGEILDSRKVFDGMKKRNTVTWTSII 337
Query: 351 SVYG 354
+ Y
Sbjct: 338 AGYA 341
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/330 (21%), Positives = 140/330 (42%), Gaps = 64/330 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q+H +I + F+G+ L+ ++ WTS++
Sbjct: 280 LEFGKQLHGAIIKKMFKEDVFIGTSLVGMYAKCGEILDSRKVFDGMKKRNTVTWTSIIAG 339
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G EE ++LF +M + + ++ + +AC ++ +GK+V+ ++
Sbjct: 340 YARNGQGEEAISLFRVMKRRKIFANNLTVVSILRACGSTRNLLMGKEVHAQIMK------ 393
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
M + + ++L+ FY KC + + +
Sbjct: 394 ------------------------NSMQSNIYIGSTLVWFYCKCEEHPFASKVLQNMPLR 429
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSW A+++GY G E L EM ++ ++PN + S L ACA ++ + GK
Sbjct: 430 DVVSWTAIISGYTSLGHEPEALEFLKEM--LEEGVEPNPFTYSSALKACAHLEAILQGKL 487
Query: 220 IHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH +V I++ CG+V + VF+ + R++V W ++I + R+G
Sbjct: 488 IHSSVNKTLALSNVFVGSALINMYAKCGYVSEAIQVFDSMPQRNLVSWKAMIVGYARNGL 547
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+AL L+ + ++ + + +VL AC
Sbjct: 548 CGEALKLMYRMQAEGIEVDDYILTTVLSAC 577
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 102/231 (44%), Gaps = 53/231 (22%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYN 41
+G +VHA ++ ++ ++GS L+ +C +WT+++ Y
Sbjct: 383 MGKEVHAQIMKNSMQSNIYIGSTLVWFYCKCEEHPFASKVLQNMPLRDVVSWTAIISGYT 442
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
LG+ E + M+++GV P+ F KAC+ L+ GK ++ +
Sbjct: 443 SLGHEPEALEFLKEMLEEGVEPNPFTYSSALKACAHLEAILQGKLIH-----------SS 491
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
V + L S +F V ++LI+ YAKC Y+ + F + Q++L
Sbjct: 492 VNKTL-----------ALSNVF--------VGSALINMYAKCGYVSEAIQVFDSMPQRNL 532
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
VSW AM+ GYA G E L+ M+ ++ + L+ VL+AC V+
Sbjct: 533 VSWKAMIVGYARNGLCGEALKLMYRMQA--EGIEVDDYILTTVLSACGDVE 581
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 10/140 (7%)
Query: 223 YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
YV + I + G ++ + VF+++ R+VV W ++++ + R G +AL L D I
Sbjct: 99 YVNNNLISAYSRFGKLVEARKVFDKMPERNVVSWTAVVNGYSRYGFDDEALRLFDDCIEN 158
Query: 283 NVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----W------NALIDMYGRCGAIQKSR 332
V+ N T V VL C K G + + W +AL+ Y +CG + +
Sbjct: 159 GVRANGKTFVCVLNLCSKRLDFELGRQIHACIVKDNWRNLIVDSALVCFYAQCGDLSGAF 218
Query: 333 KIFVLMPHKNLVSWNVMISV 352
F MP +++V W MI+
Sbjct: 219 HAFDQMPERDVVCWTTMITA 238
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 312 SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
++V N LI Y R G + ++RK+F MP +N+VSW +++ Y
Sbjct: 98 TYVNNNLISAYSRFGKLVEARKVFDKMPERNVVSWTAVVNGYS 140
>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
Length = 785
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/397 (25%), Positives = 183/397 (46%), Gaps = 74/397 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+E G+++H+H + G+E F+ + L++ + W +M+
Sbjct: 125 IEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAG 184
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
++ G ++ V L M ++G+ P+ V E K GK ++ Y
Sbjct: 185 CSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGY--------- 235
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
CV+R D +V L+D YAKC+ L + F + +
Sbjct: 236 -CVRRSF--------------------DNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVR 274
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+ VSW+AM+ GY +E L D+M +++ M P ++L VL ACA++ + G+
Sbjct: 275 NEVSWSAMIGGYVXSDCMKEALELFDQM-ILKDAMDPTPVTLGSVLRACAKLTDLSRGRK 333
Query: 220 IHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H Y+++ + + CG + + F+ ++ +D V +++I+S V++G
Sbjct: 334 LHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGN 393
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNA 317
AL + R + ++ + P+ T++ VLPAC LAAL +G T + + NA
Sbjct: 394 AAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNA 453
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
LIDMY +CG I +R++F M ++VSWN MI YG
Sbjct: 454 LIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYG 490
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/342 (26%), Positives = 158/342 (46%), Gaps = 55/342 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W ++ Y G ++ ++L++ M+ GVRP+ + P V KACS L G +++ +
Sbjct: 77 WNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAK 136
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
E + V L+D + KCG + LF M
Sbjct: 137 MFGLESDVFVCTALVDFYAKCGILVEAQRLFSSM-------------------------- 170
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
+D+V+WNAM+AG +L G ++ L+ M+M + + PN+ ++ GVL + K
Sbjct: 171 ----SHRDVVAWNAMIAGCSLYGLCDDAVQLI--MQMQEEGICPNSSTIVGVLPTVGEAK 224
Query: 213 GVKLGKAIHGYVLRHHIHLSTACG------FVICSC-----SVFNQLSTRDVVVWNSIIS 261
+ GKA+HGY +R G + C C +F+ + R+ V W+++I
Sbjct: 225 ALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIG 284
Query: 262 AFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
+V S + +AL+L +I+ + + P VT+ SVL AC KL L +G ++
Sbjct: 285 GYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXV 344
Query: 315 -----WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
N L+ MY +CG I + + F M K+ VS++ ++S
Sbjct: 345 LDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVS 386
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 120/261 (45%), Gaps = 33/261 (12%)
Query: 124 EEMDQDFLVNNS---------LIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALG 174
+++ Q FL N S L Y C + ++ F +I ++ WN ++ YA
Sbjct: 28 KKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWN 87
Query: 175 GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIH 230
G + +L M+ ++PN + VL AC+ + ++ G IH + L +
Sbjct: 88 GPFDGAIDLYH--SMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVF 145
Query: 231 LSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283
+ TA CG ++ + +F+ +S RDVV WN++I+ G DA+ L+ +
Sbjct: 146 VCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEG 205
Query: 284 VKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSR 332
+ PN+ TIV VLP + AL G G V L+DMY +C + +R
Sbjct: 206 ICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYAR 265
Query: 333 KIFVLMPHKNLVSWNVMISVY 353
KIF +M +N VSW+ MI Y
Sbjct: 266 KIFDVMGVRNEVSWSAMIGGY 286
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 154/346 (44%), Gaps = 57/346 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-GVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W++M+G Y +E + LF MI K + P V +AC++L D G+ ++ Y
Sbjct: 278 SWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCY 337
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+I K G + D L+ N+L+ YAKC + +
Sbjct: 338 II-------------------KLGXV-----------LDILLGNTLLSMYAKCGVIDDAI 367
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + KD VS++A+++G G ++ M++ D P+ ++ GVL AC+
Sbjct: 368 RFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGID--PDLTTMLGVLPACSH 425
Query: 211 VKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ ++ G HGY++ I + + CG + + VFN++ D+V WN++
Sbjct: 426 LAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAM 485
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC----------LKLAALPQGLG 309
I + G ++AL L D++ +KP+ +T + +L +C L A+ +
Sbjct: 486 IIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFS 545
Query: 310 TGSFVWN--ALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMISV 352
+ + ++D+ GR G I ++ MP + V W+ ++S
Sbjct: 546 IVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSA 591
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 25/176 (14%)
Query: 204 VLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRD 252
+L AC Q K + K IH + L++ L +C V+ + +F+++
Sbjct: 14 LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------ 306
V++WN II A+ +G A+DL ++ V+PN T VL AC L A+
Sbjct: 74 VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133
Query: 307 -----GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI---SVYG 354
GL + FV AL+D Y +CG + +++++F M H+++V+WN MI S+YG
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYG 189
>gi|449442080|ref|XP_004138810.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Cucumis sativus]
gi|449490224|ref|XP_004158542.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Cucumis sativus]
Length = 619
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 169/357 (47%), Gaps = 55/357 (15%)
Query: 20 AFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK 79
AF + +V C WTSM+ + G E +++F M+ P+ F V KAC E +
Sbjct: 244 AFERMRRRDVVC-WTSMITSCSQQGLGREAISMFSNMLSDEFLPNEFSVCSVLKACGEER 302
Query: 80 DYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDF 139
+ ++G+ ++ +I + + V L+D++ KCG + + +F+ M
Sbjct: 303 ELKIGRQLHGLIIKKIIKNDVFVGTSLVDMYAKCGNLADSREVFDGM------------- 349
Query: 140 YAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI 199
+ ++ V+W +++AGYA G EE NL M+ + + N +
Sbjct: 350 -----------------RNRNTVTWTSIIAGYAREGLGEEALNLFRLMK--RQRIPANNL 390
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYVLRH----HIHLSTACGFVICSCS-------VFNQL 248
++ +L AC ++ G+ +H ++++ +IH+ + + C C V +
Sbjct: 391 TIVSILRACGSIEASLTGREVHAQIVKNSFQTNIHIGSTLVWFYCKCRNQLKASMVLQLM 450
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
RDVV W +IIS G +AL+ L+++I V+PN+ T S L AC K+ A+ QG
Sbjct: 451 PLRDVVSWTAIISGCAHLGHESEALEFLKNMIEEGVEPNSFTYSSTLKACAKMEAVLQGK 510
Query: 309 GTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
S FV +ALI MY +CG + ++ ++F MP +NLVSW MI Y
Sbjct: 511 MIHSSANKTSALSNVFVGSALIYMYAKCGYVTEASQVFDSMPVRNLVSWKAMILCYA 567
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 158/344 (45%), Gaps = 59/344 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH--FVCPKVYKACSELKDYRVGKDVYD 89
WT+++ Y L EE + LF + GV + FVC + C++ D+ +G+ ++
Sbjct: 155 TWTAIINGYIDLDLTEEALALFSDSVKSGVLANGQMFVC--ILNLCAKRLDFELGRQIHG 212
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
++ +GN + +V++++I FYA+C+ + +
Sbjct: 213 VIV----KGN---------------------------RGNLIVDSAIIYFYAQCKDISSA 241
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F +++++D+V W +M+ + G E ++ M+ + PN S+ VL AC
Sbjct: 242 FVAFERMRRRDVVCWTSMITSCSQQGLGREAISMFS--NMLSDEFLPNEFSVCSVLKACG 299
Query: 210 QVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ + +K+G+ +HG +++ I + CG + S VF+ + R+ V W S
Sbjct: 300 EERELKIGRQLHGLIIKKIIKNDVFVGTSLVDMYAKCGNLADSREVFDGMRNRNTVTWTS 359
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------- 307
II+ + R G +AL+L R + + N +TIVS+L AC + A G
Sbjct: 360 IIAGYAREGLGEEALNLFRLMKRQRIPANNLTIVSILRACGSIEASLTGREVHAQIVKNS 419
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
T + + L+ Y +C K+ + LMP +++VSW +IS
Sbjct: 420 FQTNIHIGSTLVWFYCKCRNQLKASMVLQLMPLRDVVSWTAIIS 463
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 143/330 (43%), Gaps = 64/330 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+++G Q+H +I ++ F+G+ L++++ WTS++
Sbjct: 304 LKIGRQLHGLIIKKIIKNDVFVGTSLVDMYAKCGNLADSREVFDGMRNRNTVTWTSIIAG 363
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G EE +NLF LM + + ++ + +AC ++ G++V+ ++ F+ N
Sbjct: 364 YAREGLGEEALNLFRLMKRQRIPANNLTIVSILRACGSIEASLTGREVHAQIVKNSFQTN 423
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ ++L+ FY KCR + + +
Sbjct: 424 ------------------------------IHIGSTLVWFYCKCRNQLKASMVLQLMPLR 453
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSW A+++G A G E L M I+ ++PN+ + S L ACA+++ V GK
Sbjct: 454 DVVSWTAIISGCAHLGHESEALEFLKNM--IEEGVEPNSFTYSSTLKACAKMEAVLQGKM 511
Query: 220 IHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH +V I++ CG+V + VF+ + R++V W ++I + R+G
Sbjct: 512 IHSSANKTSALSNVFVGSALIYMYAKCGYVTEASQVFDSMPVRNLVSWKAMILCYARNGL 571
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+AL L+ + + + + +V AC
Sbjct: 572 CREALKLMYRMQAEGFEVDDYILGTVYGAC 601
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 116/244 (47%), Gaps = 23/244 (9%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V N+L+ Y + L + F ++ + +V+W A++ GY EE L + ++
Sbjct: 124 VGNNLLSSYLRLGMLVDARKVFDEMPMRSVVTWTAIINGYIDLDLTEEALALFS--DSVK 181
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----------IHLSTACGFVICS 241
+ + N +L CA+ +LG+ IHG +++ + I+ C + +
Sbjct: 182 SGVLANGQMFVCILNLCAKRLDFELGRQIHGVIVKGNRGNLIVDSAIIYFYAQCKDISSA 241
Query: 242 CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC--- 298
F ++ RDVV W S+I++ + G +A+ + +++ PN ++ SVL AC
Sbjct: 242 FVAFERMRRRDVVCWTSMITSCSQQGLGREAISMFSNMLSDEFLPNEFSVCSVLKACGEE 301
Query: 299 --LKLAALPQGL------GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
LK+ GL FV +L+DMY +CG + SR++F M ++N V+W +I
Sbjct: 302 RELKIGRQLHGLIIKKIIKNDVFVGTSLVDMYAKCGNLADSREVFDGMRNRNTVTWTSII 361
Query: 351 SVYG 354
+ Y
Sbjct: 362 AGYA 365
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 89/230 (38%), Gaps = 53/230 (23%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G +VHA ++ + +GS L+ +C +WT+++
Sbjct: 408 GREVHAQIVKNSFQTNIHIGSTLVWFYCKCRNQLKASMVLQLMPLRDVVSWTAIISGCAH 467
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
LG+ E + MI++GV P+ F KAC++++ GK ++
Sbjct: 468 LGHESEALEFLKNMIEEGVEPNSFTYSSTLKACAKMEAVLQGKMIHS------------- 514
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
TS L + V ++LI YAKC Y+ + F + ++LV
Sbjct: 515 ------------SANKTSAL-----SNVFVGSALIYMYAKCGYVTEASQVFDSMPVRNLV 557
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
SW AM+ YA G E L+ M+ + + L V AC VK
Sbjct: 558 SWKAMILCYARNGLCREALKLMYRMQ--AEGFEVDDYILGTVYGACGDVK 605
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 212 KGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSII 260
+ VK +A+H ++LR+ G ++ + VF+++ R VV W +II
Sbjct: 101 RSVKKLRAVHAFILRNFTSFGIYVGNNLLSSYLRLGMLVDARKVFDEMPMRSVVTWTAII 160
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL----------AALPQGLGT 310
+ ++ +AL L D + + V N V +L C K + +G
Sbjct: 161 NGYIDLDLTEEALALFSDSVKSGVLANGQMFVCILNLCAKRLDFELGRQIHGVIVKGNRG 220
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
V +A+I Y +C I + F M +++V W MI+
Sbjct: 221 NLIVDSAIIYFYAQCKDISSAFVAFERMRRRDVVCWTSMIT 261
>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
Length = 803
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/406 (27%), Positives = 193/406 (47%), Gaps = 85/406 (20%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYY---------------- 46
+G QVHA+ + G EL +F+ + L+ ++ + +LG +
Sbjct: 133 MGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLC 191
Query: 47 --EEIVN-LFYL--MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
E+++ L YL M+ +GV PD F V ACS L+ R GK+++ Y +
Sbjct: 192 QNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYAL--------- 242
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
K G +D++ V ++L+D Y C+ + F + + +
Sbjct: 243 ----------KNG----------SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKI 282
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
WNAM+AGY+ +E L ME + N+ +++GV+ AC + +AIH
Sbjct: 283 GLWNAMIAGYSQNEHDKEALLLFIGMEE-SAGLLANSTTMAGVVPACVRSGAFSRKEAIH 341
Query: 222 GYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
G+V++ + + + G + + +F ++ RD+V WN++I+ +V S
Sbjct: 342 GFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHE 401
Query: 271 DALDLL-----------RDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------L 308
DAL LL + ++KPN++T++++LP+C L+AL +G L
Sbjct: 402 DALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNL 461
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
T V +AL+DMY +CG +Q SRK+F +P KN+++WNV+I YG
Sbjct: 462 ATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYG 507
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/385 (25%), Positives = 181/385 (47%), Gaps = 65/385 (16%)
Query: 1 MELGIQVHAHLIVCG-VELCAFLGSQLLEVFCNWTSMMGMYNVL-GYYEEIVNLFYLMID 58
+ G ++HA+ + G ++ +F+GS L++++CN ++ V G ++ + L+ MI
Sbjct: 231 LRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIA 290
Query: 59 KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE------GNACVKRPLLDLFIK 112
+ +H D ++ I E N+ ++ ++
Sbjct: 291 GYSQNEH--------------------DKEALLLFIGMEESAGLLANSTTMAGVVPACVR 330
Query: 113 CG---RMEITSGLF--EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAM 167
G R E G +D+D V N+L+D Y++ + ++ F K++ +DLV+WN M
Sbjct: 331 SGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTM 390
Query: 168 LAGYALGGFREEVTNLLDEMEMIQ---------TDMQPNTISLSGVLAACAQVKGVKLGK 218
+ GY E+ LL +M+ ++ ++PN+I+L +L +CA + + GK
Sbjct: 391 ITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGK 450
Query: 219 AIHGYVLRHHIHLSTACG------FVICSC-----SVFNQLSTRDVVVWNSIISAFVRSG 267
IH Y +++++ A G + C C VF+Q+ ++V+ WN II A+ G
Sbjct: 451 EIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHG 510
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL------------GTGSFVW 315
+A+DLLR ++V VKPN VT +SV AC + +GL S +
Sbjct: 511 NGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHY 570
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPH 340
++D+ GR G I+++ ++ +MP
Sbjct: 571 ACVVDLLGRAGRIKEAYQLMNMMPR 595
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 86/323 (26%), Positives = 158/323 (48%), Gaps = 56/323 (17%)
Query: 56 MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR 115
MI G++PD++ P + KA ++L+D +GK ++ ++ + G
Sbjct: 1 MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGY-----------------GV 43
Query: 116 MEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGG 175
+T V N+L++ Y KC + F +I +++ VSWN++++ +L
Sbjct: 44 DSVT------------VANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLIS--SLCS 89
Query: 176 FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV---KGVKLGKAIHGYVLRHH---- 228
F + L M+ +++P++ +L V+ AC+ + +G+ +GK +H Y LR
Sbjct: 90 FEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNS 149
Query: 229 ------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
+ + G + S + RD+V WN+++S+ ++ Q+++AL+ LR++++
Sbjct: 150 FIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLE 209
Query: 283 NVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNALIDMYGRCGAIQK 330
V+P+ TI SVLPAC L L G L SFV +AL+DMY C +
Sbjct: 210 GVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLS 269
Query: 331 SRKIFVLMPHKNLVSWNVMISVY 353
R++F M + + WN MI+ Y
Sbjct: 270 GRRVFDGMFDRKIGLWNAMIAGY 292
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/404 (25%), Positives = 175/404 (43%), Gaps = 86/404 (21%)
Query: 1 MELGIQVHAHLIVCGVEL---------------CAFLGSQLLEVF--------CNWTSMM 37
MELG Q+HAH+ G + C G+ + +VF +W S++
Sbjct: 26 MELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGA-VYKVFDRISERNQVSWNSLI 84
Query: 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL---KDYRVGKDVYDYMISI 94
+E + F M+D+ V P F V ACS L + +GK V+ Y
Sbjct: 85 SSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAY---- 140
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFS 154
GL + F++ N+L+ Y K L S
Sbjct: 141 --------------------------GLRKGELNSFII-NTLVAMYGKLGKLASSKVLLG 173
Query: 155 KIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM-EMIQTDMQPNTISLSGVLAACAQVKG 213
+DLV+WN +L+ E++ L+ + EM+ ++P+ ++S VL AC+ ++
Sbjct: 174 SFGGRDLVTWNTVLSSLCQN---EQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEM 230
Query: 214 VKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ GK +H Y L++ + + C V+ VF+ + R + +WN++I+
Sbjct: 231 LRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIA 290
Query: 262 AFVRSGQVVDALDLLRDV-IVANVKPNTVTIVSVLPACLKLAA-----------LPQGLG 309
+ ++ +AL L + A + N+ T+ V+PAC++ A + +GL
Sbjct: 291 GYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLD 350
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
FV N L+DMY R G I + +IF M ++LV+WN MI+ Y
Sbjct: 351 RDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGY 394
Score = 41.2 bits (95), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 30/153 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G ++HA+ I + +GS L++++ W ++ Y +
Sbjct: 449 GKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGM 508
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY-----DYMISIKFE 97
G +E ++L +M+ +GV+P+ V+ ACS G ++ DY + +
Sbjct: 509 HGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSD 568
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDF 130
ACV +DL + GR++ L M +DF
Sbjct: 569 HYACV----VDLLGRAGRIKEAYQLMNMMPRDF 597
>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g57430, chloroplastic; Flags: Precursor
gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 890
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/406 (27%), Positives = 193/406 (47%), Gaps = 85/406 (20%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYY---------------- 46
+G QVHA+ + G EL +F+ + L+ ++ + +LG +
Sbjct: 220 MGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLC 278
Query: 47 --EEIVN-LFYL--MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
E+++ L YL M+ +GV PD F V ACS L+ R GK+++ Y +
Sbjct: 279 QNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYAL--------- 329
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
K G +D++ V ++L+D Y C+ + F + + +
Sbjct: 330 ----------KNG----------SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKI 369
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
WNAM+AGY+ +E L ME + N+ +++GV+ AC + +AIH
Sbjct: 370 GLWNAMIAGYSQNEHDKEALLLFIGMEE-SAGLLANSTTMAGVVPACVRSGAFSRKEAIH 428
Query: 222 GYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
G+V++ + + + G + + +F ++ RD+V WN++I+ +V S
Sbjct: 429 GFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHE 488
Query: 271 DALDLL-----------RDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------L 308
DAL LL + ++KPN++T++++LP+C L+AL +G L
Sbjct: 489 DALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNL 548
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
T V +AL+DMY +CG +Q SRK+F +P KN+++WNV+I YG
Sbjct: 549 ATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYG 594
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/385 (25%), Positives = 181/385 (47%), Gaps = 65/385 (16%)
Query: 1 MELGIQVHAHLIVCG-VELCAFLGSQLLEVFCNWTSMMGMYNVL-GYYEEIVNLFYLMID 58
+ G ++HA+ + G ++ +F+GS L++++CN ++ V G ++ + L+ MI
Sbjct: 318 LRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIA 377
Query: 59 KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE------GNACVKRPLLDLFIK 112
+ +H D ++ I E N+ ++ ++
Sbjct: 378 GYSQNEH--------------------DKEALLLFIGMEESAGLLANSTTMAGVVPACVR 417
Query: 113 CG---RMEITSGLF--EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAM 167
G R E G +D+D V N+L+D Y++ + ++ F K++ +DLV+WN M
Sbjct: 418 SGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTM 477
Query: 168 LAGYALGGFREEVTNLLDEMEMIQ---------TDMQPNTISLSGVLAACAQVKGVKLGK 218
+ GY E+ LL +M+ ++ ++PN+I+L +L +CA + + GK
Sbjct: 478 ITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGK 537
Query: 219 AIHGYVLRHHIHLSTACG------FVICSC-----SVFNQLSTRDVVVWNSIISAFVRSG 267
IH Y +++++ A G + C C VF+Q+ ++V+ WN II A+ G
Sbjct: 538 EIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHG 597
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL------------GTGSFVW 315
+A+DLLR ++V VKPN VT +SV AC + +GL S +
Sbjct: 598 NGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHY 657
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPH 340
++D+ GR G I+++ ++ +MP
Sbjct: 658 ACVVDLLGRAGRIKEAYQLMNMMPR 682
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 160/332 (48%), Gaps = 56/332 (16%)
Query: 47 EEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPL 106
E V + MI G++PD++ P + KA ++L+D +GK ++ ++ + ++
Sbjct: 79 REAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVT---- 134
Query: 107 LDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNA 166
V N+L++ Y KC + F +I +++ VSWN+
Sbjct: 135 -------------------------VANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNS 169
Query: 167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV---KGVKLGKAIHGY 223
+++ +L F + L M+ +++P++ +L V+ AC+ + +G+ +GK +H Y
Sbjct: 170 LIS--SLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAY 227
Query: 224 VLRHH----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
LR + + G + S + RD+V WN+++S+ ++ Q+++AL
Sbjct: 228 GLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEAL 287
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNALIDM 321
+ LR++++ V+P+ TI SVLPAC L L G L SFV +AL+DM
Sbjct: 288 EYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDM 347
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
Y C + R++F M + + WN MI+ Y
Sbjct: 348 YCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGY 379
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 102/404 (25%), Positives = 175/404 (43%), Gaps = 86/404 (21%)
Query: 1 MELGIQVHAHLIVCGVEL---------------CAFLGSQLLEVF--------CNWTSMM 37
MELG Q+HAH+ G + C G+ + +VF +W S++
Sbjct: 113 MELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGA-VYKVFDRISERNQVSWNSLI 171
Query: 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL---KDYRVGKDVYDYMISI 94
+E + F M+D+ V P F V ACS L + +GK V+ Y
Sbjct: 172 SSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAY---- 227
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFS 154
GL + F++ N+L+ Y K L S
Sbjct: 228 --------------------------GLRKGELNSFII-NTLVAMYGKLGKLASSKVLLG 260
Query: 155 KIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM-EMIQTDMQPNTISLSGVLAACAQVKG 213
+DLV+WN +L+ E++ L+ + EM+ ++P+ ++S VL AC+ ++
Sbjct: 261 SFGGRDLVTWNTVLSSLCQN---EQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEM 317
Query: 214 VKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ GK +H Y L++ + + C V+ VF+ + R + +WN++I+
Sbjct: 318 LRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIA 377
Query: 262 AFVRSGQVVDALDLLRDV-IVANVKPNTVTIVSVLPACLKLAA-----------LPQGLG 309
+ ++ +AL L + A + N+ T+ V+PAC++ A + +GL
Sbjct: 378 GYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLD 437
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
FV N L+DMY R G I + +IF M ++LV+WN MI+ Y
Sbjct: 438 RDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGY 481
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 17/168 (10%)
Query: 198 TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA--CGFVICSCSVFNQLSTRDVVV 255
T SL + +Q+ + + H Y+LR +T V + S+F S R
Sbjct: 8 TFSLPSIFPFPSQL--LPFSRHKHPYLLRATPTSATEDVASAVSGAPSIFISQS-RSPEW 64
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW 315
W ++ + VRS + +A+ D+IV +KP+ ++L A L + G + V+
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124
Query: 316 ------------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
N L+++Y +CG K+F + +N VSWN +IS
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLIS 172
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 30/153 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G ++HA+ I + +GS L++++ W ++ Y +
Sbjct: 536 GKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGM 595
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY-----DYMISIKFE 97
G +E ++L +M+ +GV+P+ V+ ACS G ++ DY + +
Sbjct: 596 HGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSD 655
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDF 130
ACV +DL + GR++ L M +DF
Sbjct: 656 HYACV----VDLLGRAGRIKEAYQLMNMMPRDF 684
>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
Length = 890
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/406 (27%), Positives = 193/406 (47%), Gaps = 85/406 (20%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYY---------------- 46
+G QVHA+ + G EL +F+ + L+ ++ + +LG +
Sbjct: 220 MGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLC 278
Query: 47 --EEIVN-LFYL--MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
E+++ L YL M+ +GV PD F V ACS L+ R GK+++ Y +
Sbjct: 279 QNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYAL--------- 329
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
K G +D++ V ++L+D Y C+ + F + + +
Sbjct: 330 ----------KNG----------SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKI 369
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
WNAM+AGY+ +E L ME + N+ +++GV+ AC + +AIH
Sbjct: 370 GLWNAMIAGYSQNEHDKEALLLFIGMEE-SAGLLANSTTMAGVVPACVRSGAFSRKEAIH 428
Query: 222 GYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
G+V++ + + + G + + +F ++ RD+V WN++I+ +V S
Sbjct: 429 GFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHE 488
Query: 271 DALDLL-----------RDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------L 308
DAL LL + ++KPN++T++++LP+C L+AL +G L
Sbjct: 489 DALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNL 548
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
T V +AL+DMY +CG +Q SRK+F +P KN+++WNV+I YG
Sbjct: 549 ATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYG 594
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/385 (25%), Positives = 181/385 (47%), Gaps = 65/385 (16%)
Query: 1 MELGIQVHAHLIVCG-VELCAFLGSQLLEVFCNWTSMMGMYNVL-GYYEEIVNLFYLMID 58
+ G ++HA+ + G ++ +F+GS L++++CN ++ V G ++ + L+ MI
Sbjct: 318 LRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIA 377
Query: 59 KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE------GNACVKRPLLDLFIK 112
+ +H D ++ I E N+ ++ ++
Sbjct: 378 GYSQNEH--------------------DKEALLLFIGMEESAGLLANSTTMAGVVPACVR 417
Query: 113 CG---RMEITSGLF--EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAM 167
G R E G +D+D V N+L+D Y++ + ++ F K++ +DLV+WN M
Sbjct: 418 SGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTM 477
Query: 168 LAGYALGGFREEVTNLLDEMEMIQ---------TDMQPNTISLSGVLAACAQVKGVKLGK 218
+ GY E+ LL +M+ ++ ++PN+I+L +L +CA + + GK
Sbjct: 478 ITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGK 537
Query: 219 AIHGYVLRHHIHLSTACG------FVICSC-----SVFNQLSTRDVVVWNSIISAFVRSG 267
IH Y +++++ A G + C C VF+Q+ ++V+ WN II A+ G
Sbjct: 538 EIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHG 597
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL------------GTGSFVW 315
+A+DLLR ++V VKPN VT +SV AC + +GL S +
Sbjct: 598 NGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHY 657
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPH 340
++D+ GR G I+++ ++ +MP
Sbjct: 658 ACVVDLLGRAGRIKEAYQLMNMMPR 682
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 161/332 (48%), Gaps = 56/332 (16%)
Query: 47 EEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPL 106
E V + MI G++PD++ P + KA ++L+D +GK ++ ++ +
Sbjct: 79 REAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGY---------- 128
Query: 107 LDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNA 166
G +T V N+L++ Y KC + F +I +++ VSWN+
Sbjct: 129 -------GVDSVT------------VANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNS 169
Query: 167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV---KGVKLGKAIHGY 223
+++ +L F + L M+ +++P++ +L V+ AC+ + +G+ +GK +H Y
Sbjct: 170 LIS--SLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAY 227
Query: 224 VLRHH----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
LR + + G + S + RD+V WN+++S+ ++ Q+++AL
Sbjct: 228 GLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEAL 287
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNALIDM 321
+ LR++++ V+P+ TI SVLPAC L L G L SFV +AL+DM
Sbjct: 288 EYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDM 347
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
Y C + R++F M + + WN MI+ Y
Sbjct: 348 YCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGY 379
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 102/404 (25%), Positives = 175/404 (43%), Gaps = 86/404 (21%)
Query: 1 MELGIQVHAHLIVCGVEL---------------CAFLGSQLLEVF--------CNWTSMM 37
MELG Q+HAH+ G + C G+ + +VF +W S++
Sbjct: 113 MELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGA-VYKVFDRISERNQVSWNSLI 171
Query: 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL---KDYRVGKDVYDYMISI 94
+E + F M+D+ V P F V ACS L + +GK V+ Y
Sbjct: 172 SSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAY---- 227
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFS 154
GL + F++ N+L+ Y K L S
Sbjct: 228 --------------------------GLRKGELNSFII-NTLVAMYGKLGKLASSKVLLG 260
Query: 155 KIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM-EMIQTDMQPNTISLSGVLAACAQVKG 213
+DLV+WN +L+ E++ L+ + EM+ ++P+ ++S VL AC+ ++
Sbjct: 261 SFGGRDLVTWNTVLSSLCQN---EQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEM 317
Query: 214 VKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ GK +H Y L++ + + C V+ VF+ + R + +WN++I+
Sbjct: 318 LRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIA 377
Query: 262 AFVRSGQVVDALDLLRDV-IVANVKPNTVTIVSVLPACLKLAA-----------LPQGLG 309
+ ++ +AL L + A + N+ T+ V+PAC++ A + +GL
Sbjct: 378 GYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLD 437
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
FV N L+DMY R G I + +IF M ++LV+WN MI+ Y
Sbjct: 438 RDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGY 481
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 17/168 (10%)
Query: 198 TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA--CGFVICSCSVFNQLSTRDVVV 255
T SL + +Q+ + + H Y+LR +T V + S+F S R
Sbjct: 8 TFSLPSIFPLPSQL--LPFSRHKHPYLLRATPTSATEDVASAVSGAPSIFISQS-RSPEW 64
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW 315
W ++ + VRS + +A+ D+IV +KP+ ++L A L + G + V+
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124
Query: 316 ------------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
N L+++Y +CG K+F + +N VSWN +IS
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLIS 172
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 30/153 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G ++HA+ I + +GS L++++ W ++ Y +
Sbjct: 536 GKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGM 595
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY-----DYMISIKFE 97
G +E ++L +M+ +GV+P+ V+ ACS G ++ DY + +
Sbjct: 596 HGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSD 655
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDF 130
ACV +DL + GR++ L M +DF
Sbjct: 656 HYACV----VDLLGRAGRIKEAYQLMNMMPRDF 684
>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 816
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 181/357 (50%), Gaps = 41/357 (11%)
Query: 24 SQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRV 83
++L+ +FC + S+ V E +++ Y + KG + + V + ++ V
Sbjct: 80 TKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAV-RFYERMRCDEV 138
Query: 84 GKDVYDYMISIKFEGNACVKRPLLDLFIKCGR----MEITSGLFEEMDQDFLVNNSLIDF 139
VYD+ ++ G +L ++ GR M IT+G + ++++
Sbjct: 139 MPVVYDFTYLLQLSGE--------NLDLRRGREIHGMVITNGF----QSNLFAMTAVVNL 186
Query: 140 YAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI 199
YAKCR ++ ++ F ++ Q+DLVSWN ++AGYA GF ++ ++M + +P++I
Sbjct: 187 YAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVV--LQMQEAGQKPDSI 244
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQL 248
+L VL A A +K +++G++IHGY R + ++++TA CG V + VF +
Sbjct: 245 TLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGM 304
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG- 307
S+R+VV WN++I + ++G+ +A ++ V+P V+++ L AC L L +G
Sbjct: 305 SSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGR 364
Query: 308 ----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+G V N+LI MY +C + + +F + HK +V+WN MI Y
Sbjct: 365 YVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYA 421
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 166/347 (47%), Gaps = 58/347 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ Y G+ V + M + G +PD V A ++LK R+G+ ++ Y
Sbjct: 210 SWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYA 269
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN--NSLIDFYAKCRYLKVS 149
FE ++VN +++D Y KC ++ +
Sbjct: 270 FRAGFE--------------------------------YMVNVATAMLDTYFKCGSVRSA 297
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + +++VSWN M+ GYA G EE ++M+ ++P +S+ G L ACA
Sbjct: 298 RLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATF--LKMLDEGVEPTNVSMMGALHACA 355
Query: 210 QVKGVKLGKAIH--------GY---VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ ++ G+ +H G+ V+ I + + C V + SVF L + VV WN+
Sbjct: 356 NLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNA 415
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------- 307
+I + ++G V +AL+L ++ ++KP++ T+VSV+ A L+ Q
Sbjct: 416 MILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTL 475
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ FV ALID + +CGAIQ +RK+F LM +++++WN MI YG
Sbjct: 476 MDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYG 522
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 100/385 (25%), Positives = 165/385 (42%), Gaps = 76/385 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
+ +G +H + G E + + +L+ + +W +M+
Sbjct: 259 LRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDG 318
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G EE F M+D+GV P + AC+ L D G+ V+
Sbjct: 319 YAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHR---------- 368
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
LLD E G D V NSLI Y+KC+ + ++ F +K K
Sbjct: 369 ------LLD--------EKKIGF------DVSVMNSLISMYSKCKRVDIAASVFGNLKHK 408
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+V+WNAM+ GYA G E NL EM+ D++P++ +L V+ A A + + K
Sbjct: 409 TVVTWNAMILGYAQNGCVNEALNLFCEMQ--SHDIKPDSFTLVSVITALADLSVTRQAKW 466
Query: 220 IHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IHG +R ++ + TA CG + + +F+ + R V+ WN++I + +G
Sbjct: 467 IHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGH 526
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GLGTGSFVWN 316
+ALDL ++ +VKPN +T +SV+ AC + + GL +
Sbjct: 527 GREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYG 586
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHK 341
A++D+ GR G + + K MP K
Sbjct: 587 AMVDLLGRAGRLDDAWKFIQDMPVK 611
>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
cordifolium]
Length = 679
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 178/344 (51%), Gaps = 27/344 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ + + +NL+ MI G+ P+ + P ++K+C++ K + GK ++ +
Sbjct: 45 SWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQI 104
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSH 150
+ + V L+ ++ + G +E +F+ +D + ++I YA + +
Sbjct: 105 LKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQ 164
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F +I KD+VSWNAM++GYA G +E L +EM ++ D++P+ +++ VL+ C
Sbjct: 165 KMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEM--MKMDVKPDESTMATVLSTCTH 222
Query: 211 VKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
V+LG+ IH ++ H I L + CG + + +F L +DV+ WN++
Sbjct: 223 SGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTL 282
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-------------Q 306
I + +AL + ++++ PN VT++S+LPAC L A+ +
Sbjct: 283 IGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLK 342
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
G+ T + + +LIDMY +CG I+ + ++F + +K+L S N MI
Sbjct: 343 GIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMI 386
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/332 (22%), Positives = 143/332 (43%), Gaps = 57/332 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y +G Y+E + LF M+ V+PD V C+ + +G+ ++ ++
Sbjct: 177 SWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWI 236
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F N + N+LID Y+KC ++ +H
Sbjct: 237 DNHGFGSN------------------------------LKLVNALIDLYSKCGEMERAHG 266
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ KD++SWN ++ GYA +E LL EM++ PN +++ +L ACA +
Sbjct: 267 LFEGLQYKDVISWNTLIGGYAYINHHKEA--LLVFQEMLKLGETPNDVTMLSILPACAHL 324
Query: 212 KGVKLGKAIHGYVLRHH-------------IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ +G+ IH Y+ + I + CG + + VF+ + + + N+
Sbjct: 325 GAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNA 384
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC------------LKLAALPQ 306
+I F G+ A DLL + ++P+ +T V +L AC K L
Sbjct: 385 MIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDY 444
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLM 338
+ + +ID+ GR G +++ ++ M
Sbjct: 445 RIEPKLEHYGCMIDLLGRSGLFKEAEELINSM 476
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 118/255 (46%), Gaps = 55/255 (21%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I++ + +SWN M+ G+AL NL + MI + PN+ + + +CA+ K
Sbjct: 35 FKSIQEPNQLSWNTMIRGHALSSDPISALNLY--VYMISLGLSPNSYTFPFLFKSCAKSK 92
Query: 213 GVKLGKAIHGYVLRH------HIHLS---------------------------------- 232
+ GK IH +L++ H+H S
Sbjct: 93 AAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMIT 152
Query: 233 --TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
+ G + + +F+++ +DVV WN++IS + G+ +AL+L +++ +VKP+ T
Sbjct: 153 GYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDEST 212
Query: 291 IVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+ +VL C + G G+ + NALID+Y +CG ++++ +F +
Sbjct: 213 MATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQ 272
Query: 340 HKNLVSWNVMISVYG 354
+K+++SWN +I Y
Sbjct: 273 YKDVISWNTLIGGYA 287
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 113/255 (44%), Gaps = 44/255 (17%)
Query: 21 FLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD 80
F G Q +V +W +++G Y + +++E + +F M+ G P+ + AC+ L
Sbjct: 268 FEGLQYKDVI-SWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGA 326
Query: 81 YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFY 140
+G+ ++ Y I K +G + + + SLID Y
Sbjct: 327 IDIGRWIHVY-IDKKLKG---------------------------IITNTSLQTSLIDMY 358
Query: 141 AKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTIS 200
AKC ++ ++ F I K L S NAM+ G+A+ G + +LL M+ + ++P+ I+
Sbjct: 359 AKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMK--KDGIEPDDIT 416
Query: 201 LSGVLAACAQVKGVKLGKAIHGYV---------LRHH---IHLSTACGFVICSCSVFNQL 248
G+L+AC+ LG+ I + L H+ I L G + + N +
Sbjct: 417 FVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSM 476
Query: 249 STR-DVVVWNSIISA 262
+ D V+W S++ A
Sbjct: 477 TMEPDGVIWGSLLKA 491
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ SVF + + + WN++I S + AL+L +I + PN+ T + +C K
Sbjct: 31 AISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAK 90
Query: 301 LAA-----------LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
A L GL V +LI MY + G ++ + K+F H+++VS+ M
Sbjct: 91 SKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAM 150
Query: 350 ISVYG 354
I+ Y
Sbjct: 151 ITGYA 155
>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
Length = 792
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/396 (27%), Positives = 173/396 (43%), Gaps = 79/396 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G +HA ++ +E F+GS L+ ++ WTS+M Y
Sbjct: 263 GKAIHARIVSSNME-SDFVGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQ 321
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+Y E ++L+ M +GV D AC+ L + GK ++ + F
Sbjct: 322 TCHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHSRVFECGF------ 375
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK-DL 161
Q +V+ +L+ YAKC L + F++++QK ++
Sbjct: 376 -------------------------QSLVVHTALLTMYAKCGELDAARAVFNRVRQKRNV 410
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
W AM++ YA G +E L D+M + +PN + S VLAAC+ ++ G IH
Sbjct: 411 YCWTAMISAYAQAGHTQEALELYDQM--VAEGTRPNEYTFSNVLAACSSSGDLEAGMKIH 468
Query: 222 GYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
G+V + + A CG + + S F +D+V WN++I A+ + G
Sbjct: 469 GHVENSELASNVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAYAQHGLGR 528
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGSF-----VWNAL 318
+ALDL + + V P+ VTI S L AC +L G L SF V AL
Sbjct: 529 EALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQSFRSSLMVQTAL 588
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
++MYGRCG ++ +R +F M ++++SW M S Y
Sbjct: 589 VNMYGRCGRLETARSMFEDMGQRDVLSWTAMTSAYA 624
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 159/347 (45%), Gaps = 58/347 (16%)
Query: 25 QLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVG 84
Q V+C WT+M+ Y G+ +E + L+ M+ +G RP+ + V ACS D G
Sbjct: 406 QKRNVYC-WTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSSSGDLEAG 464
Query: 85 KDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCR 144
++ ++ + + N V+ N+L+ YAKC
Sbjct: 465 MKIHGHVENSELASNVAVQ------------------------------NALVTMYAKCG 494
Query: 145 YLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGV 204
L+++ F +KDLVSWNAM+ YA G E +L M + P+ ++++
Sbjct: 495 SLELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTM--TSQGVLPDEVTIASS 552
Query: 205 LAACAQVKGVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRD 252
L+ACA ++LG+ IH VL++ +++ CG + + S+F + RD
Sbjct: 553 LSACAISGSLQLGREIHSRVLKNQSFRSSLMVQTALVNMYGRCGRLETARSMFEDMGQRD 612
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS 312
V+ W ++ SA+ + G LDL ++++ ++PN +T S+L C L +G+
Sbjct: 613 VLSWTAMTSAYAQQGHADQVLDLYLEMVLHGIRPNEITFTSILVGCSHAGLLARGVECFL 672
Query: 313 FVWNA------------LIDMYGRCGAIQKSRKIFVLMPHK-NLVSW 346
+ + ++D+ GR G ++ + + MP++ + V+W
Sbjct: 673 EMQSEHEVVPIREHFLCMVDLLGRSGRLRDAEALVESMPYQPDSVAW 719
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 99/394 (25%), Positives = 174/394 (44%), Gaps = 76/394 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN----------------------WTSMMGMYN 41
G VH HL+ G FLG+ L++++ N + M+ Y
Sbjct: 61 GKLVHRHLLRTGHGRNQFLGNLLIQMYGNCGEIHLARAAFQNFASIKAVACYNQMLSAYG 120
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G + + L++ M ++G PD V +CS + R ++++ +I
Sbjct: 121 KNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLREAREIHASII--------- 171
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ P + + + + N+L++ Y KC ++ + F IK +D
Sbjct: 172 -EAPQI------------------IRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDA 212
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSW +M++ YA GF +E +L +M+ +QP++I+ + L AC ++ GKAIH
Sbjct: 213 VSWTSMISSYANNGFCDEALDLYQQMDA--DGIQPDSITFTSALLACTKLVD---GKAIH 267
Query: 222 GYVLRHH----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
++ + I++ CG V + F ++ + VV W S+++A+V++ +
Sbjct: 268 ARIVSSNMESDFVGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYRE 327
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW----------NALIDM 321
ALDL + V + VT V+ L AC L AL +G S V+ AL+ M
Sbjct: 328 ALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHSRVFECGFQSLVVHTALLTM 387
Query: 322 YGRCGAIQKSRKIFVLMPHK-NLVSWNVMISVYG 354
Y +CG + +R +F + K N+ W MIS Y
Sbjct: 388 YAKCGELDAARAVFNRVRQKRNVYCWTAMISAYA 421
>gi|302787038|ref|XP_002975289.1| hypothetical protein SELMODRAFT_10002 [Selaginella moellendorffii]
gi|300156863|gb|EFJ23490.1| hypothetical protein SELMODRAFT_10002 [Selaginella moellendorffii]
Length = 730
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 106/401 (26%), Positives = 177/401 (44%), Gaps = 84/401 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+E G ++HA ++ VEL L + L+ ++ N W ++
Sbjct: 95 LETGKKIHAQIVAGEVELELNLANSLISMYSNCGSLVDAKRFFDGMNRRNVVSWNCIIAA 154
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
++ G+Y E V+LFY M +G +PD V+ ACS L+D G+ ++
Sbjct: 155 FSGHGHYREAVDLFYEMEKQGFKPDRVSFVSVFSACSILEDLSQGRRIHARFCD------ 208
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
GRM++ D + N+L++ YA+C L + F I +
Sbjct: 209 --------------GRMKL----------DVSIGNTLLNMYARCGSLDDARLVFDSITSR 244
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQT-DMQPNTISLSGVLAACAQVKGVKLGK 218
++VSW +M+A YA + D E+ Q + PN ++ +L ACA+ + +K +
Sbjct: 245 NIVSWTSMIAAYA------QFDRFHDAYEVFQKMGVAPNEVTFITILGACAEARALKQAR 298
Query: 219 AIHGYVLRHHI-------------HLSTACGFVICSCSVFNQLST--RDVVVWNSIISAF 263
IH VL I + CG + + +VF ++T R+VV W SII+A
Sbjct: 299 EIHSLVLTSGILEKQQLTVGNGLINTYAKCGSLSDAKTVFESMATAERNVVTWTSIIAAC 358
Query: 264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGS 312
G +AL L + + + N +T +VL AC L + + G +
Sbjct: 359 GLCGHPREALALFHRMELEGIPANEITFGTVLSACADLGSTREARYLHGLIVSGGYDRDT 418
Query: 313 FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V N LI+M+G+CG ++ +R IF M +NLV+W M+ Y
Sbjct: 419 VVCNGLINMFGKCGMLEDARAIFERMRSRNLVTWTGMLGAY 459
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 123/250 (49%), Gaps = 27/250 (10%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
+D + L+ N+L+ Y KC L + F I +K++ SW+ ++ Y+ E L
Sbjct: 12 IDSETLLGNTLVQMYGKCGNLAEARAAFDGIAEKNVFSWSIIIGLYSRHRLSREAIELFH 71
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS-----------TA 234
M D++PN ++ L AC+ + ++ GK IH ++ + L +
Sbjct: 72 AM-----DVRPNCVTFINTLGACSSAEFLETGKKIHAQIVAGEVELELNLANSLISMYSN 126
Query: 235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV 294
CG ++ + F+ ++ R+VV WN II+AF G +A+DL ++ KP+ V+ VSV
Sbjct: 127 CGSLVDAKRFFDGMNRRNVVSWNCIIAAFSGHGHYREAVDLFYEMEKQGFKPDRVSFVSV 186
Query: 295 LPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
AC L L QG + + N L++MY RCG++ +R +F + +N+
Sbjct: 187 FSACSILEDLSQGRRIHARFCDGRMKLDVSIGNTLLNMYARCGSLDDARLVFDSITSRNI 246
Query: 344 VSWNVMISVY 353
VSW MI+ Y
Sbjct: 247 VSWTSMIAAY 256
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/348 (22%), Positives = 163/348 (46%), Gaps = 30/348 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WTS++ + G+ E + LF+ M +G+ + V AC++L R + ++ +
Sbjct: 350 TWTSIIAACGLCGHPREALALFHRMELEGIPANEITFGTVLSACADLGSTREARYLHGLI 409
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSH 150
+S ++ + V L+++F KCG +E +FE M LV ++ Y + + ++ +
Sbjct: 410 VSGGYDRDTVVCNGLINMFGKCGMLEDARAIFERMRSRNLVTWTGMLGAYIQQQEIRQAV 469
Query: 151 CKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
F ++++ KD+++W M+A YA G+ +E L M + + P+ I+ +L A
Sbjct: 470 SLFQQMERISYKDVMAWTTMVAAYAQAGYADEALKLYARMGL--EGVAPDEITFVNLLHA 527
Query: 208 CAQVKGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVW 256
C+++ K G I ++L + S ACG + + VF L+ RD W
Sbjct: 528 CSRMGAKKEGWTIRSHILERGLPSSRVLGNGLVCFYGACGTWLQAKMVFENLAERDSAAW 587
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ---------- 306
N+ I + G ++L L +++ ++P+ +T +VL +C + +
Sbjct: 588 NAAIGVSGQHGFYDESLRLFERMVLEGMEPDEITFTNVLFSCSHSGEIERAWRWFLVMRG 647
Query: 307 --GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH-KNLVSWNVMIS 351
G+ W L D++GR G I ++ ++ +P + ++W ++S
Sbjct: 648 DHGMEPNVEHWGCLADLFGRLGWIDEAERLVSFLPRTRASIAWTTLLS 695
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 91/396 (22%), Positives = 176/396 (44%), Gaps = 85/396 (21%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNVLG 44
++H+ L G++ LG+ L++++ +W+ ++G+Y+
Sbjct: 2 RIHSELARTGIDSETLLGNTLVQMYGKCGNLAEARAAFDGIAEKNVFSWSIIIGLYSRHR 61
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
E + LF+ M VRP+ ACS + GK ++
Sbjct: 62 LSREAIELFHAM---DVRPNCVTFINTLGACSSAEFLETGKKIH---------------- 102
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
+I +G E++ + + NSLI Y+ C L + F + ++++VSW
Sbjct: 103 -----------AQIVAG---EVELELNLANSLISMYSNCGSLVDAKRFFDGMNRRNVVSW 148
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
N ++A ++ G E +L EME + +P+ +S V +AC+ ++ + G+ IH
Sbjct: 149 NCIIAAFSGHGHYREAVDLFYEME--KQGFKPDRVSFVSVFSACSILEDLSQGRRIHARF 206
Query: 225 LRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
+ L + CG + + VF+ +++R++V W S+I+A+ + + DA
Sbjct: 207 CDGRMKLDVSIGNTLLNMYARCGSLDDARLVFDSITSRNIVSWTSMIAAYAQFDRFHDAY 266
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW-------------NALID 320
++ + + VA PN VT +++L AC + AL Q S V N LI+
Sbjct: 267 EVFQKMGVA---PNEVTFITILGACAEARALKQAREIHSLVLTSGILEKQQLTVGNGLIN 323
Query: 321 MYGRCGAIQKSRKIFVLM--PHKNLVSWNVMISVYG 354
Y +CG++ ++ +F M +N+V+W +I+ G
Sbjct: 324 TYAKCGSLSDAKTVFESMATAERNVVTWTSIIAACG 359
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/381 (21%), Positives = 159/381 (41%), Gaps = 91/381 (23%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ Y + + +F M GV P+ + AC+E + + ++++ +
Sbjct: 248 SWTSMIAAYAQFDRFHDAYEVFQKM---GVAPNEVTFITILGACAEARALKQAREIHSLV 304
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ TSG+ E+ Q V N LI+ YAKC L +
Sbjct: 305 L--------------------------TSGILEK--QQLTVGNGLINTYAKCGSLSDAKT 336
Query: 152 KFSKIK--QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + ++++V+W +++A L G E L ME+ + N I+ VL+ACA
Sbjct: 337 VFESMATAERNVVTWTSIIAACGLCGHPREALALFHRMEL--EGIPANEITFGTVLSACA 394
Query: 210 QVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTR------- 251
+ + + +HG ++ I++ CG + + ++F ++ +R
Sbjct: 395 DLGSTREARYLHGLIVSGGYDRDTVVCNGLINMFGKCGMLEDARAIFERMRSRNLVTWTG 454
Query: 252 ---------------------------DVVVWNSIISAFVRSGQVVDALDLLRDVIVANV 284
DV+ W ++++A+ ++G +AL L + + V
Sbjct: 455 MLGAYIQQQEIRQAVSLFQQMERISYKDVMAWTTMVAAYAQAGYADEALKLYARMGLEGV 514
Query: 285 KPNTVTIVSVLPACLKLAA-----------LPQGLGTGSFVWNALIDMYGRCGAIQKSRK 333
P+ +T V++L AC ++ A L +GL + + N L+ YG CG +++
Sbjct: 515 APDEITFVNLLHACSRMGAKKEGWTIRSHILERGLPSSRVLGNGLVCFYGACGTWLQAKM 574
Query: 334 IFVLMPHKNLVSWNVMISVYG 354
+F + ++ +WN I V G
Sbjct: 575 VFENLAERDSAAWNAAIGVSG 595
>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
Length = 694
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/394 (24%), Positives = 192/394 (48%), Gaps = 77/394 (19%)
Query: 6 QVHAHLIVCGVELCAFLGSQLL-------------EVFCN--------WTSMMGMYNVLG 44
Q+HA L+V G++ FL ++L+ +VF + W +++ Y+
Sbjct: 39 QIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNN 98
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
++++ + ++ M V PD F P + KACS L ++G+ V+ + + F
Sbjct: 99 HFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGF-------- 150
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFS--KIKQKDLV 162
D D V N LI YAKCR L + F + ++ +V
Sbjct: 151 ----------------------DADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIV 188
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW A+++ YA G E + M + D++P+ ++L VL A ++ +K G++IH
Sbjct: 189 SWTAIVSAYAQNGEPMEALEIFSHMR--KMDVKPDWVALVSVLNAFTCLQDLKQGRSIHA 246
Query: 223 YVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V++ + + CG V + +F+++ + ++++WN++IS + ++G +
Sbjct: 247 SVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYARE 306
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTGS-----FVWNALID 320
A+D+ ++I +V+P+T++I S + AC ++ +L Q +G F+ +ALID
Sbjct: 307 AIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALID 366
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
M+ +CG+++ +R +F +++V W+ MI YG
Sbjct: 367 MFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYG 400
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/372 (26%), Positives = 172/372 (46%), Gaps = 56/372 (15%)
Query: 5 IQVHAHLIVCGVELCAFLGSQLLE-VFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRP 63
I ++A G F G L E +WT+++ Y G E + +F M V+P
Sbjct: 161 IALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKP 220
Query: 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLF 123
D V A + L+D + G+ ++ ++ + GL
Sbjct: 221 DWVALVSVLNAFTCLQDLKQGRSIHASVVKM--------------------------GL- 253
Query: 124 EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNL 183
E++ D L+ SL YAKC + + F K+K +L+ WNAM++GYA G+ E ++
Sbjct: 254 -EIEPDLLI--SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDM 310
Query: 184 LDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA----- 234
EM I D++P+TIS++ ++ACAQV ++ ++++ YV R + +S+A
Sbjct: 311 FHEM--INKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMF 368
Query: 235 --CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
CG V + VF++ RDVVVW+++I + G+ +A+ L R + V PN VT +
Sbjct: 369 AKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFL 428
Query: 293 SVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-H 340
+L AC + +G + + +ID+ GR G + ++ ++ MP
Sbjct: 429 GLLMACNHSGMVREGWWFFNLMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQ 488
Query: 341 KNLVSWNVMISV 352
+ W ++S
Sbjct: 489 PGVTVWGALLSA 500
>gi|145340387|ref|NP_193587.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122236144|sp|Q0WNP3.1|PP319_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18520
gi|110738662|dbj|BAF01256.1| hypothetical protein [Arabidopsis thaliana]
gi|332658657|gb|AEE84057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 617
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 113/397 (28%), Positives = 180/397 (45%), Gaps = 78/397 (19%)
Query: 2 ELGIQVHAHLIVCGV-------------ELCAFLGSQLLEV-------FCNWTSMMGMYN 41
ELG QVH +++ GV C L S L +WT+++ +
Sbjct: 201 ELGRQVHGNMVKVGVGNLIVESSLVYFYAQCGELTSALRAFDMMEEKDVISWTAVISACS 260
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G+ + + +F M++ P+ F + KACSE K R G+ V+ ++
Sbjct: 261 RKGHGIKAIGMFIGMLNHWFLPNEFTVCSILKACSEEKALRFGRQVHSLVVK-------- 312
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK--FSKIKQK 159
RM + D V SL+D YAKC ++S C+ F + +
Sbjct: 313 -------------RM---------IKTDVFVGTSLMDMYAKCG--EISDCRKVFDGMSNR 348
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+ V+W +++A +A GF EE +L M+ + + N +++ +L AC V + LGK
Sbjct: 349 NTVTWTSIIAAHAREGFGEEAISLFRIMK--RRHLIANNLTVVSILRACGSVGALLLGKE 406
Query: 220 IHGYVLRHHIHLSTACG----FVICSC-------SVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H ++++ I + G ++ C C +V QL +RDVV W ++IS G
Sbjct: 407 LHAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGH 466
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNA 317
+ALD L+++I V+PN T S L AC +L G S FV +A
Sbjct: 467 ESEALDFLKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSA 526
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
LI MY +CG + ++ ++F MP KNLVSW MI Y
Sbjct: 527 LIHMYAKCGFVSEAFRVFDSMPEKNLVSWKAMIMGYA 563
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 156/345 (45%), Gaps = 60/345 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH---FVCPKVYKACSELKDYRVGKDVY 88
WT+M+ Y G +E LF + G+R + FVC + CS ++ +G+ V+
Sbjct: 150 TWTAMIDGYLKYGLEDEAFALFEDYVKHGIRFTNERMFVC--LLNLCSRRAEFELGRQVH 207
Query: 89 DYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKV 148
M+ + GN V+ L+ + +CG E+TS L
Sbjct: 208 GNMVKVGV-GNLIVESSLVYFYAQCG--ELTSALR------------------------- 239
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
F +++KD++SW A+++ + G + + + M+ PN ++ +L AC
Sbjct: 240 ---AFDMMEEKDVISWTAVISACSRKGHGIKAIGMF--IGMLNHWFLPNEFTVCSILKAC 294
Query: 209 AQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWN 257
++ K ++ G+ +H V++ I + CG + VF+ +S R+ V W
Sbjct: 295 SEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWT 354
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------- 307
SII+A R G +A+ L R + ++ N +T+VS+L AC + AL G
Sbjct: 355 SIIAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLGKELHAQIIKN 414
Query: 308 -LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ ++ + L+ +Y +CG + + + +P +++VSW MIS
Sbjct: 415 SIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMIS 459
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 144/330 (43%), Gaps = 64/330 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ G QVH+ ++ ++ F+G+ L++++ WTS++
Sbjct: 300 LRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWTSIIAA 359
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ G+ EE ++LF +M + + ++ + +AC + +GK+++ +I E N
Sbjct: 360 HAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLGKELHAQIIKNSIEKN 419
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ L+ L+ KCG E F V ++ +
Sbjct: 420 VYIGSTLVWLYCKCG----------ESRDAFNV--------------------LQQLPSR 449
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSW AM++G + G E + L EM IQ ++PN + S L ACA + + +G++
Sbjct: 450 DVVSWTAMISGCSSLGHESEALDFLKEM--IQEGVEPNPFTYSSALKACANSESLLIGRS 507
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH ++H IH+ CGFV + VF+ + +++V W ++I + R+G
Sbjct: 508 IHSIAKKNHALSNVFVGSALIHMYAKCGFVSEAFRVFDSMPEKNLVSWKAMIMGYARNGF 567
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+AL L+ + + + ++L C
Sbjct: 568 CREALKLMYRMEAEGFEVDDYIFATILSTC 597
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 117/250 (46%), Gaps = 24/250 (9%)
Query: 127 DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDE 186
DQ N+LI + L + F + +K+ V+W AM+ GY G +E L +
Sbjct: 114 DQVIYFGNNLISSCVRLGDLVYARKVFDSMPEKNTVTWTAMIDGYLKYGLEDEAFALFE- 172
Query: 187 MEMIQTDMQ-PNTISLSGVLAACAQVKGVKLGKAIHGYVLR----------HHIHLSTAC 235
+ ++ ++ N +L C++ +LG+ +HG +++ ++ C
Sbjct: 173 -DYVKHGIRFTNERMFVCLLNLCSRRAEFELGRQVHGNMVKVGVGNLIVESSLVYFYAQC 231
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
G + + F+ + +DV+ W ++ISA R G + A+ + ++ PN T+ S+L
Sbjct: 232 GELTSALRAFDMMEEKDVISWTAVISACSRKGHGIKAIGMFIGMLNHWFLPNEFTVCSIL 291
Query: 296 PACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLV 344
AC + AL G + T FV +L+DMY +CG I RK+F M ++N V
Sbjct: 292 KACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTV 351
Query: 345 SWNVMISVYG 354
+W +I+ +
Sbjct: 352 TWTSIIAAHA 361
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 102/231 (44%), Gaps = 53/231 (22%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYN 41
LG ++HA +I +E ++GS L+ ++C +WT+M+ +
Sbjct: 403 LGKELHAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCS 462
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
LG+ E ++ MI +GV P+ F KAC+ + +G+ ++ SI + +A
Sbjct: 463 SLGHESEALDFLKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIH----SIAKKNHA- 517
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
L ++F V ++LI YAKC ++ + F + +K+L
Sbjct: 518 ----LSNVF---------------------VGSALIHMYAKCGFVSEAFRVFDSMPEKNL 552
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
VSW AM+ GYA GF E L+ ME + + + +L+ C ++
Sbjct: 553 VSWKAMIMGYARNGFCREALKLMYRME--AEGFEVDDYIFATILSTCGDIE 601
>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Cucumis sativus]
Length = 762
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 106/397 (26%), Positives = 187/397 (47%), Gaps = 75/397 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++LG Q+H + CG+EL + + + LL ++ +W ++
Sbjct: 175 LDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISG 234
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G E +LF MI G++PD +EL + K+++ Y+I +
Sbjct: 235 YVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIR-----H 289
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
A V LD+F+K ++LID Y KCR ++++ +
Sbjct: 290 AVV----LDVFLK---------------------SALIDIYFKCRDVEMAQKNLCQSSSF 324
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D V M++GY L G +E ++Q M+P +++ S + A A + + LGK
Sbjct: 325 DTVVCTTMISGYVLNGKNKEALEAF--RWLVQERMKPTSVTFSSIFPAFAGLAALNLGKE 382
Query: 220 IHGYVLRHHI----HLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+HG +++ + H+ +A CG + +C VFN+++ +D + WNS+I++ ++G+
Sbjct: 383 LHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGR 442
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNA 317
+A++L R + + + + V+I L AC L AL G L + + ++
Sbjct: 443 PGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESS 502
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
LIDMY +CG + SR++F M KN VSWN +IS YG
Sbjct: 503 LIDMYAKCGNLNFSRRVFDRMQEKNEVSWNSIISAYG 539
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 158/344 (45%), Gaps = 56/344 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYL-MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W M+ + ++G + + LFYL M+ GV PD + P V KAC LK ++GK V++
Sbjct: 26 WNWMIRGFTMMGQFNYAL-LFYLKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHE-- 82
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
++ G + +D V +SLI YA+ +L +
Sbjct: 83 -TVNLMG---------------------------LKEDVFVGSSLIKLYAENGHLSDAQY 114
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F I QKD V WN ML GY G + +EM ++++PN+++ + VL+ CA
Sbjct: 115 LFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIF--LEMRHSEIKPNSVTFACVLSVCASE 172
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACG------FVICSC-----SVFNQLSTRDVVVWNSII 260
+ LG +HG + + L + + C C +F+ L D+V WN II
Sbjct: 173 AMLDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGII 232
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLG 309
S +V++G + +A L R +I A +KP+++T S LP +L +L +
Sbjct: 233 SGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVV 292
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
F+ +ALID+Y +C ++ ++K + V MIS Y
Sbjct: 293 LDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGY 336
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 87/378 (23%), Positives = 166/378 (43%), Gaps = 76/378 (20%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVF-------------CNW--------TSMMGMYNVLG 44
++H ++I V L FL S L++++ C T+M+ Y + G
Sbjct: 281 EIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNG 340
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
+E + F ++ + ++P ++ A + L +GK+++ +I K
Sbjct: 341 KNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTK--------- 391
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
+D+ V ++++D YAKC L ++ F++I +KD + W
Sbjct: 392 ---------------------LDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICW 430
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG-- 222
N+M+ + G E NL +M M T + + +S+SG L+ACA + + GK IHG
Sbjct: 431 NSMITSCSQNGRPGEAINLFRQMGMEGT--RYDCVSISGALSACANLPALHYGKEIHGLM 488
Query: 223 ---------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
Y I + CG + S VF+++ ++ V WNSIISA+ G + + L
Sbjct: 489 IKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSWNSIISAYGNHGDLKECL 548
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNALIDM 321
L +++ ++P+ VT + ++ AC + +G+ + + + DM
Sbjct: 549 ALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADM 608
Query: 322 YGRCGAIQKSRKIFVLMP 339
+GR G + ++ + MP
Sbjct: 609 FGRAGRLHEAFETINSMP 626
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/394 (23%), Positives = 165/394 (41%), Gaps = 75/394 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+++G VH + + G++ F+GS L++++ W M+
Sbjct: 74 VKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNG 133
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G + +F M ++P+ V C+ +G ++ + E +
Sbjct: 134 YVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVGCGLELD 193
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ V LL ++ KC ++ LF+ + Q
Sbjct: 194 SPVANTLLAMYSKCQCLQAARKLFDTLPQS------------------------------ 223
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
DLVSWN +++GY G E +L MI ++P++I+ + L ++ +K K
Sbjct: 224 DLVSWNGIISGYVQNGLMGEAEHLF--RGMISAGIKPDSITFASFLPCVNELLSLKHCKE 281
Query: 220 IHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IHGY++RH + L C V + Q S+ D VV ++IS +V +G+
Sbjct: 282 IHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGK 341
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNA 317
+AL+ R ++ +KP +VT S+ PA LAAL G L V +A
Sbjct: 342 NKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSA 401
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
++DMY +CG + + ++F + K+ + WN MI+
Sbjct: 402 ILDMYAKCGRLDLACRVFNRITEKDAICWNSMIT 435
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 116/236 (49%), Gaps = 24/236 (10%)
Query: 140 YAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI 199
Y + LK + F ++ +WN M+ G+ + G + LL ++M+ + P+
Sbjct: 2 YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMG--QFNYALLFYLKMLGAGVSPDKY 59
Query: 200 SLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQL 248
+ V+ AC +K VK+GK +H +V I L G + + +F+ +
Sbjct: 60 TFPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----LKLAA 303
+D V+WN +++ +V++G +A+ + ++ + +KPN+VT VL C L L
Sbjct: 120 PQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGT 179
Query: 304 LPQGLGTG------SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G+ G S V N L+ MY +C +Q +RK+F +P +LVSWN +IS Y
Sbjct: 180 QLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGY 235
>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
Group]
gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
Length = 658
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 170/345 (49%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++G G Y++ V LF M +G D V AC + +G V+ Y
Sbjct: 52 SWNSIIGGCASNGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGY- 110
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ +GL E + N+L+D Y+ C + ++
Sbjct: 111 -------------------------SVRTGLISETS----LGNALLDMYSNCSDWRSTNK 141
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++QK++VSW AM+ Y G ++V L EM + ++P+ +++ L A A
Sbjct: 142 IFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGL--EGIRPDVFAITSALDAFAGN 199
Query: 212 KGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ +K GK++HGY +R+ I + CG++ + +F+ ++ +D + WN++I
Sbjct: 200 ESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLI 259
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG----------- 309
+ RS +A L ++++ ++PN VT+ +LPA L++L +G
Sbjct: 260 GGYSRSNLANEAFTLFNEMLL-QLRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYL 318
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+FV NAL+DMY +CGA+ +R++F ++ +KNL+SW +MI+ YG
Sbjct: 319 EDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYG 363
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/328 (21%), Positives = 147/328 (44%), Gaps = 65/328 (19%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYN 41
+G VH + + G+ LG+ LL+++ N WT+M+ Y
Sbjct: 103 IGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYT 162
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G+++++ LF M +G+RPD F A + + + GK V+ Y I E
Sbjct: 163 RAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIE---- 218
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ V N+L++ Y KC Y++ + F + +KD
Sbjct: 219 --------------------------EVLPVANALMEMYVKCGYMEEARFIFDHVTKKDT 252
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
+SWN ++ GY+ E L +EM ++Q ++PN ++++ +L A A + ++ G+ +H
Sbjct: 253 ISWNTLIGGYSRSNLANEAFTLFNEM-LLQ--LRPNAVTMACILPAAASLSSLERGREMH 309
Query: 222 GYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y +R + + CG ++ + +F+ L+ ++++ W +I+ + G+
Sbjct: 310 AYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGR 369
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPAC 298
DA+ L + + ++P+ + ++L AC
Sbjct: 370 DAIALFEQMKGSGIQPDAGSFSAILYAC 397
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 120/242 (49%), Gaps = 24/242 (9%)
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
N+LI FYAK ++ + F ++ Q+D++SWN+++ G A G ++ L M + +
Sbjct: 23 NALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGLYDKAVELFVRMWLEGQE 82
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVI----CSCS------ 243
+ T L V+ AC Q +G +HGY +R + T+ G + +CS
Sbjct: 83 LDSTT--LLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTN 140
Query: 244 -VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
+F + ++VV W ++I+++ R+G L +++ + ++P+ I S L A
Sbjct: 141 KIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNE 200
Query: 303 ALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+L G + V NAL++MY +CG ++++R IF + K+ +SWN +I
Sbjct: 201 SLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIG 260
Query: 352 VY 353
Y
Sbjct: 261 GY 262
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 96/231 (41%), Gaps = 54/231 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++ G VH + I G+E + + L+E++ +W +++G
Sbjct: 202 LKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGG 261
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y+ E LF M+ + +RP+ + A + L G++++ Y
Sbjct: 262 YSRSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAASLSSLERGREMHAY--------- 311
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V+R L +D V N+L+D Y KC L ++ F + K
Sbjct: 312 -AVRRGYL--------------------EDNFVANALVDMYVKCGALLLARRLFDMLTNK 350
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+L+SW M+AGY + G + L ++M+ + +QP+ S S +L AC+
Sbjct: 351 NLISWTIMIAGYGMHGRGRDAIALFEQMK--GSGIQPDAGSFSAILYACSH 399
>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 896
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/363 (26%), Positives = 173/363 (47%), Gaps = 71/363 (19%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ ++ + E + F LM+ +GV D V ACS L+ VGK+++ Y+
Sbjct: 264 SWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYV 323
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ ++ ++ V ++L+D Y CR ++
Sbjct: 324 LRNN-----------------------------DLIENSFVGSALVDMYCNCRQVESGRR 354
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ-TDMQPNTISLSGVLAACAQ 210
F I + + WNAM++GYA G E+ L +EMI+ + PNT +++ V+ AC
Sbjct: 355 VFDHILGRRIELWNAMISGYARNGLDEKALILF--IEMIKVAGLLPNTTTMASVMPACVH 412
Query: 211 VKGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ ++IHGY ++ + + + G + S ++F+ + RD V WN++
Sbjct: 413 CEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTM 472
Query: 260 ISAFVRSGQVVDALDLLRDV-----------------IVANVKPNTVTIVSVLPACLKLA 302
I+ +V SG+ +AL LL ++ KPN +T+++VLP C LA
Sbjct: 473 ITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALA 532
Query: 303 ALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
A+ +G L + V +AL+DMY +CG + SR++F MP+KN+++WNV+I
Sbjct: 533 AIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIM 592
Query: 352 VYG 354
G
Sbjct: 593 ACG 595
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 98/349 (28%), Positives = 158/349 (45%), Gaps = 58/349 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W + + E ++ + M G RPD+F P V KA S L+D + G+ ++
Sbjct: 59 SWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAA 118
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + G +T V N+L++ Y KC + C
Sbjct: 119 VKFGY-----------------GSSSVT------------VANTLVNMYGKCGGIG-DVC 148
Query: 152 K-FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
K F +I +D VSWN+ +A E+ M+M +M+ ++ +L V AC+
Sbjct: 149 KVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQM--ENMELSSFTLVSVALACSN 206
Query: 211 V---KGVKLGKAIHGYVLR----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWN 257
+ G++LGK +HGY LR + + G V S ++F RD+V WN
Sbjct: 207 LGVMHGLRLGKQLHGYSLRVGDQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWN 266
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------- 307
++IS+F +S + +AL R +++ V+ + VTI SVLPAC L L G
Sbjct: 267 TMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRN 326
Query: 308 --LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L SFV +AL+DMY C ++ R++F + + + WN MIS Y
Sbjct: 327 NDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYA 375
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 94/349 (26%), Positives = 154/349 (44%), Gaps = 60/349 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL---KDYRVGKDVY 88
+W S + +E+ + F M + + F V ACS L R+GK ++
Sbjct: 161 SWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLH 220
Query: 89 DYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKV 148
Y + + DQ NN+L+ YAK +
Sbjct: 221 GYSLRVG-------------------------------DQKTFTNNALMAMYAKLGRVDD 249
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
S F +D+VSWN M++ ++ E M+ ++ + ++++ VL AC
Sbjct: 250 SKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFF--RLMVLEGVELDGVTIASVLPAC 307
Query: 209 AQVKGVKLGKAIHGYVLRH-----HIHLSTACGFVICSC-------SVFNQLSTRDVVVW 256
+ ++ + +GK IH YVLR+ + + +A + C+C VF+ + R + +W
Sbjct: 308 SHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELW 367
Query: 257 NSIISAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVLPACLKLAALPQ--------- 306
N++IS + R+G AL L ++I VA + PNT T+ SV+PAC+ A
Sbjct: 368 NAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAV 427
Query: 307 --GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G +V NAL+DMY R G + S IF M ++ VSWN MI+ Y
Sbjct: 428 KLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGY 476
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/405 (22%), Positives = 172/405 (42%), Gaps = 96/405 (23%)
Query: 1 MELGIQVHAHLIVCGVEL-CAFLGSQLLEVFCN---------------------WTSMMG 38
+++G ++HA+++ + +F+GS L++++CN W +M+
Sbjct: 313 LDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMIS 372
Query: 39 MYNVLGYYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
Y G E+ + LF MI G+ P+ V AC + + + ++ Y + + F+
Sbjct: 373 GYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFK 432
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
+D V N+L+D Y++ + +S F ++
Sbjct: 433 ------------------------------EDRYVQNALMDMYSRMGKMDISETIFDSME 462
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDM---------------QPNTISLS 202
+D VSWN M+ GY L G LL EM+ ++ +PN I+L
Sbjct: 463 VRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLM 522
Query: 203 GVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTR 251
VL CA + + GK IH Y +R+ + + CG + S VFN++ +
Sbjct: 523 TVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNK 582
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIV-----ANVKPNTVTIVSVLPACLKLAALPQ 306
+V+ WN +I A G+ +AL+L ++++ KPN VT ++V AC + +
Sbjct: 583 NVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISE 642
Query: 307 GLG------------TGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
GL S + ++D+ GR G ++++ ++ MP
Sbjct: 643 GLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMP 687
>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 694
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 100/394 (25%), Positives = 192/394 (48%), Gaps = 77/394 (19%)
Query: 6 QVHAHLIVCGVELCAFLGSQLL-------------EVFCN--------WTSMMGMYNVLG 44
Q+HA L+V G++ FL ++L+ +VF + W +++ Y+
Sbjct: 39 QIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNN 98
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
++++ + ++ M V PD F P + KAC L ++G+ V+ + + FE
Sbjct: 99 HFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEA------ 152
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFS--KIKQKDLV 162
D V N LI YAKCR L + F + ++ +V
Sbjct: 153 ------------------------DVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIV 188
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW A+++ YA G E + +M + D++P+ ++L VL A ++ ++ G++IH
Sbjct: 189 SWTAIVSAYAQNGEPVEALEIFSQMR--KMDVKPDCVALVSVLNAFTCLQDLEQGRSIHA 246
Query: 223 YVLRHH--------IHLST---ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V++ I L+T CG V + +F+++ + ++++WN++IS + ++G D
Sbjct: 247 SVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKD 306
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNALID 320
A+DL ++I +V+P+T++I S + AC ++ +L Q F+ +ALID
Sbjct: 307 AIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALID 366
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
M+ +CG+++ +R +F +++V W+ MI YG
Sbjct: 367 MFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYG 400
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 103/398 (25%), Positives = 179/398 (44%), Gaps = 78/398 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC-----------------------NWTSMM 37
+++G VHA + G E F+ + L+ ++ +WT+++
Sbjct: 135 LQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIV 194
Query: 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
Y G E + +F M V+PD V A + L+D G+ ++ ++ +
Sbjct: 195 SAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKM--- 251
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
GL E + D L+ SL YAKC + + F K+K
Sbjct: 252 -----------------------GL--ETEPDLLI--SLNTMYAKCGQVATAKILFDKMK 284
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+L+ WNAM++GYA GF ++ +L EM I D++P+TIS++ ++ACAQV ++
Sbjct: 285 SPNLILWNAMISGYAKNGFAKDAIDLFHEM--INKDVRPDTISITSAISACAQVGSLEQA 342
Query: 218 KAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
+ + YV R + +S+A CG V C+ SVF++ RDVVVW+++I +
Sbjct: 343 RWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLH 402
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVW 315
GQ +A+ L R + V PN VT + +L AC + +G + +
Sbjct: 403 GQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMADHKINPQQQHY 462
Query: 316 NALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ID+ GR G + ++ ++ MP + W ++S
Sbjct: 463 ACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSA 500
>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
Length = 890
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 94/398 (23%), Positives = 189/398 (47%), Gaps = 53/398 (13%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G ++H+H+ G+E + + L+ ++C +W++M+ Y
Sbjct: 299 GRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQ 358
Query: 43 LGYYE-----EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
GY + E+ L M +GV P+ + KACS G+ ++ + + FE
Sbjct: 359 SGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFE 418
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKI 156
+ ++ + +++ KCG + +F +M+ +V SL+ Y KC L + FS++
Sbjct: 419 SDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEM 478
Query: 157 KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKL 216
+++VSWN M+AGYA G +V LL M++ QP+ +++ +L AC + ++
Sbjct: 479 STRNVVSWNLMIAGYAQSGDIAKVFELLSSMKV--EGFQPDRVTIISILEACGALSALER 536
Query: 217 GKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVR 265
GK +H ++ + T CG V + +VF+++S RD V WN++++ + +
Sbjct: 537 GKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQ 596
Query: 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSF 313
G +A+DL + ++ V PN +T +V+ AC + + +G + G
Sbjct: 597 HGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQ 656
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ ++D+ GR G +Q++ + MP ++ W+ ++
Sbjct: 657 HYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALL 694
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 98/387 (25%), Positives = 179/387 (46%), Gaps = 75/387 (19%)
Query: 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS 93
T+++ MY+ G +F M ++ V + +A ++ + ++Y+ M+
Sbjct: 218 TALITMYSKCGEISLACEIFQKMKERNV----VSWTAIIQANAQHRKLNEAFELYEKMLQ 273
Query: 94 IKFEGNACVKRPLLDLFIKCGRME-------ITSGLFEE-MDQDFLVNNSLIDFYAKCRY 145
NA + L C E I S + E ++ D +V N+LI Y KC
Sbjct: 274 AGISPNAVT---FVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNC 330
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFRE-----EVTNLLDEMEMIQTDMQPNTIS 200
++ + F ++ ++D++SW+AM+AGYA G+++ EV LL+ M + + PN ++
Sbjct: 331 IQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMR--REGVFPNKVT 388
Query: 201 LSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA---------------------- 234
+L AC+ ++ G+ IH + L TA
Sbjct: 389 FMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKME 448
Query: 235 ----------------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRD 278
CG + + VF+++STR+VV WN +I+ + +SG + +LL
Sbjct: 449 NKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSS 508
Query: 279 VIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGA 327
+ V +P+ VTI+S+L AC L+AL + GL + + V +LI MY +CG
Sbjct: 509 MKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGE 568
Query: 328 IQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ ++R +F + +++ V+WN M++ YG
Sbjct: 569 VTEARTVFDKISNRDTVAWNAMLAGYG 595
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 94/400 (23%), Positives = 177/400 (44%), Gaps = 80/400 (20%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
E G VH L G+ + +LG+ L+ + W+SM+ Y
Sbjct: 95 EDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAY 154
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+ + + F M D + P+ + KAC+ +Y + + + +K G
Sbjct: 155 AGNNHPAKAFDTFERMKDANIEPNRITFLSILKACN---NYSMLEKAREIHTVVKASG-- 209
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
M+ D V +LI Y+KC + ++ F K+K+++
Sbjct: 210 -------------------------METDVAVATALITMYSKCGEISLACEIFQKMKERN 244
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+VSW A++ A E L ++M +Q + PN ++ +L +C + + G+ I
Sbjct: 245 VVSWTAIIQANAQHRKLNEAFELYEKM--LQAGISPNAVTFVSLLNSCNTPEALNRGRRI 302
Query: 221 HGYV----LRHHIHLSTACGFVICSCS-------VFNQLSTRDVVVWNSIISAFVRSG-Q 268
H ++ L + ++ A + C C+ F+++S RDV+ W+++I+ + +SG Q
Sbjct: 303 HSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQ 362
Query: 269 VVDALD----LLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSF 313
++LD LL + V PN VT +S+L AC AL QG +
Sbjct: 363 DKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRS 422
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ A+ +MY +CG+I ++ ++F M +KN+V+W ++++Y
Sbjct: 423 LQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMY 462
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 137/270 (50%), Gaps = 29/270 (10%)
Query: 112 KCGRMEITSGLFEEMDQ-----DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNA 166
K R E + +++D+ D + NSLI+FY+K + F ++ +D+V+W++
Sbjct: 90 KLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSS 149
Query: 167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV-- 224
M+A YA + + + M+ +++PN I+ +L AC ++ + IH V
Sbjct: 150 MIAAYAGNNHPAKAFDTFERMK--DANIEPNRITFLSILKACNNYSMLEKAREIHTVVKA 207
Query: 225 --LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDL 275
+ + ++TA CG + +C +F ++ R+VV W +II A + ++ +A +L
Sbjct: 208 SGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFEL 267
Query: 276 LRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWNALIDMYGR 324
++ A + PN VT VS+L +C AL +GL T V NALI MY +
Sbjct: 268 YEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCK 327
Query: 325 CGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
C IQ +R+ F M ++++SW+ MI+ Y
Sbjct: 328 CNCIQDARETFDRMSKRDVISWSAMIAGYA 357
>gi|195615078|gb|ACG29369.1| pentatricopeptide repeat protein PPR1106-17 [Zea mays]
gi|414868049|tpg|DAA46606.1| TPA: pentatricopeptide repeat protein PPR1106-17 [Zea mays]
Length = 618
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 91/344 (26%), Positives = 165/344 (47%), Gaps = 54/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ Y G+ ++ + +F M+ +G RP+ F KAC+E K R GK ++ +
Sbjct: 257 SWTTMITAYVQHGHSDKALQMFPTMVSEGFRPNEFTVCSALKACAEEKALRFGKQLHGAI 316
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ ++ D V ++L+ YA+C + +
Sbjct: 317 VKKLYK------------------------------YDIHVGSALVTMYARCGEVFDAQT 346
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K+ +++ ++W +M++GYA G EE L +M+M + + N +++ +L+AC +
Sbjct: 347 VFDKMPRRNTITWTSMISGYAQSGCGEEAVLLFRKMKMRRVFV--NHLTIVSLLSACGSM 404
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVIC-----------SCSVFNQLSTRDVVVWNSII 260
+ + GK +H ++++ + + G + + + + RD V W ++I
Sbjct: 405 QSIYHGKELHAQIIKNCMEENLQIGSTLVWFYNRRGEHTYATRILEAMPDRDAVAWTAMI 464
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG----------- 309
S + G V+AL L +++ V PNT T S L AC +L AL G
Sbjct: 465 SGYNNLGHNVEALKSLDEMLWDGVVPNTYTYSSALKACARLEALQDGRRIHGVVNKTQAF 524
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ FV +LIDMY RCG + ++R++F MP NLV+W VMI+ +
Sbjct: 525 SNVFVGCSLIDMYMRCGKVDEARRVFDAMPEHNLVTWKVMITGF 568
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 164/346 (47%), Gaps = 59/346 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH--FVCPKVYKACSELKDYRVGKDVYD 89
+WT+MM Y LG + E+ L M+ GV+ + FVC + K+C E D R+G+ V+
Sbjct: 157 SWTAMMNGYQKLGCHGEVARLLMDMLIAGVQGNSLTFVC--LLKSCGERCDARLGQQVH- 213
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
CV +K G + +V++++ FYA+C + +
Sbjct: 214 ----------CCV--------VKGGWSNV------------IVDSAITHFYAQCGDVAAA 243
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F ++ +D++SW M+ Y G ++ + M+ +PN ++ L ACA
Sbjct: 244 STVFDRMASRDVISWTTMITAYVQHGHSDKALQMFP--TMVSEGFRPNEFTVCSALKACA 301
Query: 210 QVKGVKLGKAIHGYVL----RHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNS 258
+ K ++ GK +HG ++ ++ IH+ +A CG V + +VF+++ R+ + W S
Sbjct: 302 EEKALRFGKQLHGAIVKKLYKYDIHVGSALVTMYARCGEVFDAQTVFDKMPRRNTITWTS 361
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------- 307
+IS + +SG +A+ L R + + V N +TIVS+L AC + ++ G
Sbjct: 362 MISGYAQSGCGEEAVLLFRKMKMRRVFVNHLTIVSLLSACGSMQSIYHGKELHAQIIKNC 421
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ + + L+ Y R G + +I MP ++ V+W MIS Y
Sbjct: 422 MEENLQIGSTLVWFYNRRGEHTYATRILEAMPDRDAVAWTAMISGY 467
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 128/247 (51%), Gaps = 27/247 (10%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCK--FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
V+N+LI Y R+ +V++ + F ++ ++ +VSW AM+ GY G EV LL M+
Sbjct: 125 FVSNNLISAYV--RFDEVANARKVFDEMPERSIVSWTAMMNGYQKLGCHGEVARLL--MD 180
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----------IHLSTACGFV 238
M+ +Q N+++ +L +C + +LG+ +H V++ H CG V
Sbjct: 181 MLIAGVQGNSLTFVCLLKSCGERCDARLGQQVHCCVVKGGWSNVIVDSAITHFYAQCGDV 240
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ +VF+++++RDV+ W ++I+A+V+ G AL + ++ +PN T+ S L AC
Sbjct: 241 AAASTVFDRMASRDVISWTTMITAYVQHGHSDKALQMFPTMVSEGFRPNEFTVCSALKAC 300
Query: 299 LKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
+ AL G V +AL+ MY RCG + ++ +F MP +N ++W
Sbjct: 301 AEEKALRFGKQLHGAIVKKLYKYDIHVGSALVTMYARCGEVFDAQTVFDKMPRRNTITWT 360
Query: 348 VMISVYG 354
MIS Y
Sbjct: 361 SMISGYA 367
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 107/256 (41%), Gaps = 43/256 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WTSM+ Y G EE V LF M + V +H + AC ++ GK+++ +
Sbjct: 358 TWTSMISGYAQSGCGEEAVLLFRKMKMRRVFVNHLTIVSLLSACGSMQSIYHGKELHAQI 417
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I E N + L+ + + G + + E M
Sbjct: 418 IKNCMEENLQIGSTLVWFYNRRGEHTYATRILEAM------------------------- 452
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+D V+W AM++GY G E LDEM + + PNT + S L ACA++
Sbjct: 453 -----PDRDAVAWTAMISGYNNLGHNVEALKSLDEM--LWDGVVPNTYTYSSALKACARL 505
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ ++ G+ IHG V + I + CG V + VF+ + ++V W +I
Sbjct: 506 EALQDGRRIHGVVNKTQAFSNVFVGCSLIDMYMRCGKVDEARRVFDAMPEHNLVTWKVMI 565
Query: 261 SAFVRSGQVVDALDLL 276
+ F ++G+ +AL +
Sbjct: 566 TGFTQNGRSEEALKYM 581
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 74/180 (41%), Gaps = 32/180 (17%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT+M+ YN LG+ E + M+ GV P+ + KAC+ L+ + G+ ++
Sbjct: 460 WTAMISGYNNLGHNVEALKSLDEMLWDGVVPNTYTYSSALKACARLEALQDGRRIH---- 515
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
G + ++F+ C SLID Y +C + +
Sbjct: 516 -----GVVNKTQAFSNVFVGC---------------------SLIDMYMRCGKVDEARRV 549
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + + +LV+W M+ G+ G EE + M+ Q + LS VL++C +
Sbjct: 550 FDAMPEHNLVTWKVMITGFTQNGRSEEALKYMFLMQ--QEGYVVDEFVLSTVLSSCGDFQ 607
Score = 41.2 bits (95), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 306 QGLGT-GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ LG+ G FV N LI Y R + +RK+F MP +++VSW M++ Y
Sbjct: 117 RSLGSLGVFVSNNLISAYVRFDEVANARKVFDEMPERSIVSWTAMMNGY 165
>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 811
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 108/345 (31%), Positives = 160/345 (46%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT M+ Y +YEE + LF M G +P++F K+C L+ + VGK V+
Sbjct: 204 SWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCA 263
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ ++ + V LL+L+ K G + LFEEM
Sbjct: 264 LKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMP------------------------ 299
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+ DL+ W+ M+A YA +E +L + M QT + PN + + VL ACA
Sbjct: 300 ------KTDLIPWSLMIARYAQSDRSKEALDLF--LRMRQTSVVPNNFTFASVLQACASS 351
Query: 212 KGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ LGK IH VL+ ++ +S A CG + S +F +L R+ V WN+II
Sbjct: 352 VSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTII 411
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------- 313
+V+ G A++L ++ +++P VT SVL A LAAL GL S
Sbjct: 412 VGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYN 471
Query: 314 ----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V N+LIDMY +CG I +R F M ++ VSWN MI Y
Sbjct: 472 KDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYS 516
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 131/286 (45%), Gaps = 43/286 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W+ M+ Y +E ++LF M V P++F V +AC+ +GK ++
Sbjct: 306 WSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIH---- 361
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+CV +K G ++ + V+N+++D YAKC ++ S
Sbjct: 362 -------SCV--------LKFG-----------LNSNVFVSNAIMDVYAKCGEIENSMKL 395
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ ++ V+WN ++ GY G E NL M++ DMQP ++ S VL A A +
Sbjct: 396 FEELPDRNDVTWNTIIVGYVQLGDGERAMNLF--THMLEHDMQPTEVTYSSVLRASASLA 453
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ G IH ++ I + CG + + F++++ RD V WN++I
Sbjct: 454 ALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMIC 513
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
+ G ++AL+L + + KPN +T V VL AC L +G
Sbjct: 514 GYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKG 559
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 106/240 (44%), Gaps = 53/240 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++LG Q+H+ ++ G+ F+ + +++V+ W +++
Sbjct: 354 LDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVG 413
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y LG E +NLF M++ ++P V +A + L G ++ I +
Sbjct: 414 YVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMY--- 470
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
++D +V NSLID YAKC + + F K+ ++
Sbjct: 471 ---------------------------NKDTVVANSLIDMYAKCGRINDARLTFDKMNKR 503
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D VSWNAM+ GY++ G E NL D M+ TD +PN ++ GVL+AC+ + G+A
Sbjct: 504 DEVSWNAMICGYSMHGMSMEALNLFDMMQ--HTDCKPNKLTFVGVLSACSNAGLLYKGQA 561
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 107/248 (43%), Gaps = 24/248 (9%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D N L++FY + L+ + F ++ Q + +S+ + GY+ + + + +
Sbjct: 69 DLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFI--LR 126
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG--YVLRHH---------IHLSTACGF 237
+ + + N + +L + L +H Y L HH I + G
Sbjct: 127 IFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGN 186
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
V + VF+ + +D+V W +++ + + ++L L + + KPN TI L +
Sbjct: 187 VDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKS 246
Query: 298 CLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
CL L A G FV AL+++Y + G I ++++F MP +L+ W
Sbjct: 247 CLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPW 306
Query: 347 NVMISVYG 354
++MI+ Y
Sbjct: 307 SLMIARYA 314
>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 824
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 100/345 (28%), Positives = 169/345 (48%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y G E+ ++LF M+ G+ D V CS +G+ ++ Y
Sbjct: 218 SWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYA 277
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I F ++ +NN L+D Y+K L +
Sbjct: 278 IKASF------------------------------GKELTLNNCLLDMYSKSGNLNSAIQ 307
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + ++ +VSW +M+AGYA G + L EME + + P+ +++ +L ACA
Sbjct: 308 VFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEME--KEGISPDIFTITTILHACACT 365
Query: 212 KGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
++ GK +H Y+ ++ + +S A CG + + SVF+++ +D+V WN++I
Sbjct: 366 GLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMI 425
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
+ ++ +AL+L + + N KPN++T+ +LPAC LAAL +G
Sbjct: 426 GGYSKNSLPNEALNLFVE-MQYNSKPNSITMACILPACASLAALERGQEIHGHILRNGFS 484
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V NAL+DMY +CGA+ +R +F ++P K+LVSW VMI+ YG
Sbjct: 485 LDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYG 529
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 159/331 (48%), Gaps = 56/331 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ Y G + V LF+ M +G+ PD F + AC+ GKDV++Y+
Sbjct: 319 SWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYI 378
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
K M D V+N+L+D YAKC + +H
Sbjct: 379 KENK------------------------------MQSDLFVSNALMDMYAKCGSMGDAHS 408
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS+++ KD+VSWN M+ GY+ E NL EM Q + +PN+I+++ +L ACA +
Sbjct: 409 VFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEM---QYNSKPNSITMACILPACASL 465
Query: 212 KGVKLGKAIHGYVLRHHI----HLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
++ G+ IHG++LR+ H++ A CG + + +F+ + +D+V W +I
Sbjct: 466 AALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMI 525
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN---- 316
+ + G +A+ ++ + ++P+ V+ +S+L AC L +G G + + N
Sbjct: 526 AGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCI 585
Query: 317 --------ALIDMYGRCGAIQKSRKIFVLMP 339
++D+ R G + K+ K +MP
Sbjct: 586 EPKSEHYACIVDLLARAGNLSKAYKFIKMMP 616
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/387 (25%), Positives = 185/387 (47%), Gaps = 61/387 (15%)
Query: 19 CAFLGSQLLE---VFCNWTSMMGMYNV-LGYYEEIVNLFYLM--IDKGVRPD---HFVCP 69
CA +G+ +L + C T YN+ + + E+ NL M I++ +PD C
Sbjct: 51 CATIGTSVLPSETIDCKITD----YNIEICRFCELGNLRRAMELINQSPKPDLELRTYC- 105
Query: 70 KVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQ 128
V + C++LK + G+ ++ + S E + + L+ +++ CG + +F+++ ++
Sbjct: 106 SVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANE 165
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ------------------KDLVSWNAMLAG 170
+ N L++ YAK + S F ++++ +D++SWN+M++G
Sbjct: 166 KVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISG 225
Query: 171 YALGGFREEVTNLLDEMEM--IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH 228
Y G E+ +L ++M + I TD+ ++ V+A C+ + LG+A+HGY ++
Sbjct: 226 YVSNGLSEKGLDLFEQMLLLGINTDLA----TMVSVVAGCSNTGMLLLGRALHGYAIKAS 281
Query: 229 -----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLR 277
+ + + G + + VF + R VV W S+I+ + R G ++ L
Sbjct: 282 FGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFH 341
Query: 278 DVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCG 326
++ + P+ TI ++L AC L G + + FV NAL+DMY +CG
Sbjct: 342 EMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCG 401
Query: 327 AIQKSRKIFVLMPHKNLVSWNVMISVY 353
++ + +F M K++VSWN MI Y
Sbjct: 402 SMGDAHSVFSEMQVKDIVSWNTMIGGY 428
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 30/142 (21%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
+E G ++H H++ G L + + L++++ +WT M+
Sbjct: 468 LERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAG 527
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM-----ISI 94
Y + GY E + F M + G+ PD + ACS G ++ M I
Sbjct: 528 YGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEP 587
Query: 95 KFEGNACVKRPLLDLFIKCGRM 116
K E AC+ +DL + G +
Sbjct: 588 KSEHYACI----VDLLARAGNL 605
>gi|359480813|ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Vitis vinifera]
Length = 634
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 122/428 (28%), Positives = 199/428 (46%), Gaps = 78/428 (18%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G Q+H H+I+CG++ F+ ++L++++ + WT+++G Y+
Sbjct: 42 GKQLHQHIILCGLDHHPFMLTKLVQMYADCGDLGSAQALFDKLSQPNVFAWTAILGFYSR 101
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G +E V + M KGV PD +V PKV++AC +L VG V+ ++ E + V
Sbjct: 102 NGLSDECVRTYSEMKLKGVLPDKYVFPKVFRACGQLLWLEVGIQVHKDVVICGCEFDLQV 161
Query: 103 KRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVS------------ 149
L+D++ K G + +F+EM ++D L NS+I Y +L+ S
Sbjct: 162 CNSLIDMYSKSGDVGSGRRVFDEMVERDVLSWNSMISGYVCNGFLEFSVELLASMRIRGF 221
Query: 150 -------------HCK----------FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDE 186
+C+ F +IK+ +++S +++GY+ G E+ + E
Sbjct: 222 EPDMVTWNTVMDAYCRMGLCDEAWEIFEQIKEPNIISLTTLVSGYSRIGNHEKSLGIFRE 281
Query: 187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH-------------HIHLST 233
M M + P+ SLS VL +C + + G+ IHGY +R + +
Sbjct: 282 M-MSRRVAFPDLDSLSSVLVSCRHLGALVCGQEIHGYGIRSVDSSSFYKSAGAALLTMYV 340
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
C + + +VF + DVV WN++I FV AL+ + + + N +TI +
Sbjct: 341 KCKRIQDALNVFELMDRFDVVTWNAMILGFVDLEMGHLALECFSKMQRSGIMNNQITIST 400
Query: 294 VLPAC-LKLAALPQGLGT-GSF-----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
VLPAC LK T SF VWNALI MY +CG I + IF M ++LVSW
Sbjct: 401 VLPACDLKSGKQVHAYITKNSFSSVIPVWNALIHMYSKCGCIGTAYSIFSNMISRDLVSW 460
Query: 347 NVMISVYG 354
N MI +G
Sbjct: 461 NTMIGGFG 468
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 96/385 (24%), Positives = 164/385 (42%), Gaps = 89/385 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E+GIQVH +++CG E + + L++++ +W SM+
Sbjct: 140 LEVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVERDVLSWNSMISG 199
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G+ E V L M +G PD V A + + + ++ IK E N
Sbjct: 200 YVCNGFLEFSVELLASMRIRGFEPDMVTWNTVMDAYCRMG---LCDEAWEIFEQIK-EPN 255
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEM--------DQDFL-------------------- 131
L+ + + G E + G+F EM D D L
Sbjct: 256 IISLTTLVSGYSRIGNHEKSLGIFREMMSRRVAFPDLDSLSSVLVSCRHLGALVCGQEIH 315
Query: 132 ---------------VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGF 176
+L+ Y KC+ ++ + F + + D+V+WNAM+ G+
Sbjct: 316 GYGIRSVDSSSFYKSAGAALLTMYVKCKRIQDALNVFELMDRFDVVTWNAMILGFV---- 371
Query: 177 REEVTNLLDE--MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH------ 228
E+ +L E +M ++ + N I++S VL AC +K GK +H Y+ ++
Sbjct: 372 DLEMGHLALECFSKMQRSGIMNNQITISTVLPAC----DLKSGKQVHAYITKNSFSSVIP 427
Query: 229 -----IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283
IH+ + CG + + S+F+ + +RD+V WN++I F G AL LLRD+ ++
Sbjct: 428 VWNALIHMYSKCGCIGTAYSIFSNMISRDLVSWNTMIGGFGMHGLGQFALQLLRDMSHSD 487
Query: 284 VKPNTVTIVSVLPACLKLAALPQGL 308
V PN+VT S L AC + +G+
Sbjct: 488 VCPNSVTFTSALSACSHSGLVDEGM 512
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 25/184 (13%)
Query: 195 QPNTIS---LSGVLAACAQVKGVKLGKAIHGYV----LRHH-------IHLSTACGFVIC 240
PN +S L+ +L C+ K + GK +H ++ L HH + + CG +
Sbjct: 17 NPNLLSSFQLNHLLQLCSNSKALHQGKQLHQHIILCGLDHHPFMLTKLVQMYADCGDLGS 76
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ ++F++LS +V W +I+ + R+G + + ++ + V P+ V AC +
Sbjct: 77 AQALFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRACGQ 136
Query: 301 LAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L L G+ V N+LIDMY + G + R++F M ++++SWN M
Sbjct: 137 LLWLEVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVERDVLSWNSM 196
Query: 350 ISVY 353
IS Y
Sbjct: 197 ISGY 200
>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 773
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 108/401 (26%), Positives = 176/401 (43%), Gaps = 85/401 (21%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ Y G + + F M+ G+ PDH V P V KAC+ L D +G+ ++ Y+I
Sbjct: 76 WKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLNLGESLHGYII 135
Query: 93 SIKFEGNACVKRPLLDLFIK------CGRMEI-TSGLFEEMDQ--------DFLVNNS-- 135
+ + + L++++ K GR + S + +EM + LV N
Sbjct: 136 RVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSVRTASVLVGNQGR 195
Query: 136 ------------------------LIDFYAKCRYLKVSHCK------------------- 152
ID+ + Y ++ C
Sbjct: 196 KVSDIEAFNYDVSCRSREFEAQVLEIDYKPRSEYREMEACNLGQQIKDISHSMSVDSVRK 255
Query: 153 -FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +KDLVSWN ++AG A G E ++ EM +++P++ +LS VL A+
Sbjct: 256 IFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMG--GANLKPDSFTLSSVLPLIAEN 313
Query: 212 KGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ GK IHG YV I + C V+ S VF L+ RD + WNSII
Sbjct: 314 VDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSII 373
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLG 309
+ V++G + L R +++A +KP + + S++PAC L L G
Sbjct: 374 AGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFD 433
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
F+ ++L+DMY +CG I+ +R+IF M +++VSW MI
Sbjct: 434 ENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMI 474
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 146/331 (44%), Gaps = 55/331 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ G Y E + + M ++PD F V +E D GK+++
Sbjct: 267 SWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIH--- 323
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
C R + +D + V +SLID YAKC + S+
Sbjct: 324 --------GCSIR-------------------QGLDAEVYVASSLIDMYAKCTRVVDSYR 356
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ + ++D +SWN+++AG G +E +M M + ++P + S S ++ ACA +
Sbjct: 357 VFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAK--IKPKSYSFSSIMPACAHL 414
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ LGK +HGY+ R+ + + CG + + +F+++ RD+V W ++I
Sbjct: 415 TTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMI 474
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GL 308
G +DA++L + ++PN V ++VL AC + + G+
Sbjct: 475 MGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGI 534
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
G + A+ D+ GR G ++++ MP
Sbjct: 535 APGVEHYAAVSDLLGRAGRLEEAYDFICGMP 565
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/229 (20%), Positives = 93/229 (40%), Gaps = 53/229 (23%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVL-------------------- 43
G ++H I G++ ++ S L++++ T ++ Y V
Sbjct: 319 GKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQ 378
Query: 44 -GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G ++E + F M+ ++P + + AC+ L +GK ++ Y+ F+ N +
Sbjct: 379 NGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFI 438
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L+D++ KCG + +F+ M + +D+V
Sbjct: 439 ASSLVDMYAKCGNIRTARQIFDRM------------------------------RLRDMV 468
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
SW AM+ G AL G + L ++M+ ++PN ++ VL AC+
Sbjct: 469 SWTAMIMGCALHGHALDAIELFEQMKT--EGIEPNYVAFMAVLTACSHA 515
>gi|414868050|tpg|DAA46607.1| TPA: hypothetical protein ZEAMMB73_506268 [Zea mays]
Length = 369
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 95/342 (27%), Positives = 167/342 (48%), Gaps = 54/342 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ Y G+ ++ + +F M+ +G RP+ F KAC+E K R GK ++
Sbjct: 8 SWTTMITAYVQHGHSDKALQMFPTMVSEGFRPNEFTVCSALKACAEEKALRFGKQLH--- 64
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
A VK+ L++ D V ++L+ YA+C + +
Sbjct: 65 -------GAIVKK-----------------LYK---YDIHVGSALVTMYARCGEVFDAQT 97
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K+ +++ ++W +M++GYA G EE L +M+M + + N +++ +L+AC +
Sbjct: 98 VFDKMPRRNTITWTSMISGYAQSGCGEEAVLLFRKMKMRRVFV--NHLTIVSLLSACGSM 155
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVIC-----------SCSVFNQLSTRDVVVWNSII 260
+ + GK +H ++++ + + G + + + + RD V W ++I
Sbjct: 156 QSIYHGKELHAQIIKNCMEENLQIGSTLVWFYNRRGEHTYATRILEAMPDRDAVAWTAMI 215
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG----------- 309
S + G V+AL L +++ V PNT T S L AC +L AL G
Sbjct: 216 SGYNNLGHNVEALKSLDEMLWDGVVPNTYTYSSALKACARLEALQDGRRIHGVVNKTQAF 275
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ FV +LIDMY RCG + ++R++F MP NLV+W VMI+
Sbjct: 276 SNVFVGCSLIDMYMRCGKVDEARRVFDAMPEHNLVTWKVMIT 317
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 109/220 (49%), Gaps = 24/220 (10%)
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
+ +D++SW M+ Y G ++ + M + +PN ++ L ACA+ K ++
Sbjct: 1 MASRDVISWTTMITAYVQHGHSDKALQMFPTM--VSEGFRPNEFTVCSALKACAEEKALR 58
Query: 216 LGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
GK +HG +++ + IH+ +A CG V + +VF+++ R+ + W S+IS +
Sbjct: 59 FGKQLHGAIVKKLYKYDIHVGSALVTMYARCGEVFDAQTVFDKMPRRNTITWTSMISGYA 118
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSF 313
+SG +A+ L R + + V N +TIVS+L AC + ++ G +
Sbjct: 119 QSGCGEEAVLLFRKMKMRRVFVNHLTIVSLLSACGSMQSIYHGKELHAQIIKNCMEENLQ 178
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ + L+ Y R G + +I MP ++ V+W MIS Y
Sbjct: 179 IGSTLVWFYNRRGEHTYATRILEAMPDRDAVAWTAMISGY 218
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 107/256 (41%), Gaps = 43/256 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WTSM+ Y G EE V LF M + V +H + AC ++ GK+++ +
Sbjct: 109 TWTSMISGYAQSGCGEEAVLLFRKMKMRRVFVNHLTIVSLLSACGSMQSIYHGKELHAQI 168
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I E N + L+ + + G + + E M
Sbjct: 169 IKNCMEENLQIGSTLVWFYNRRGEHTYATRILEAM------------------------- 203
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+D V+W AM++GY G E LDEM + + PNT + S L ACA++
Sbjct: 204 -----PDRDAVAWTAMISGYNNLGHNVEALKSLDEM--LWDGVVPNTYTYSSALKACARL 256
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ ++ G+ IHG V + I + CG V + VF+ + ++V W +I
Sbjct: 257 EALQDGRRIHGVVNKTQAFSNVFVGCSLIDMYMRCGKVDEARRVFDAMPEHNLVTWKVMI 316
Query: 261 SAFVRSGQVVDALDLL 276
+ F ++G+ +AL +
Sbjct: 317 TGFTQNGRSEEALKYM 332
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 74/180 (41%), Gaps = 32/180 (17%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT+M+ YN LG+ E + M+ GV P+ + KAC+ L+ + G+ ++
Sbjct: 211 WTAMISGYNNLGHNVEALKSLDEMLWDGVVPNTYTYSSALKACARLEALQDGRRIH---- 266
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
G + ++F+ C SLID Y +C + +
Sbjct: 267 -----GVVNKTQAFSNVFVGC---------------------SLIDMYMRCGKVDEARRV 300
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + + +LV+W M+ G+ G EE + M+ Q + LS VL++C +
Sbjct: 301 FDAMPEHNLVTWKVMITGFTQNGRSEEALKYMFLMQ--QEGYVVDEFVLSTVLSSCGDFQ 358
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 160/322 (49%), Gaps = 55/322 (17%)
Query: 52 LFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111
++ M+ KG+ PD++ P V KAC+E + R G++V+ G A I
Sbjct: 112 VYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVH---------GQA----------I 152
Query: 112 KCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGY 171
K G + D V+N+L+ YA C ++ + F Q+DLVSW M+ GY
Sbjct: 153 KMG-----------LASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGY 201
Query: 172 ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH--- 228
GF E L EM ++Q + ++L VL++CA++ ++LG+ +H Y++R+
Sbjct: 202 VKMGFAREGVGLF--FEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVN 259
Query: 229 ---------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
+ + CG + VF ++ ++VV WNS+IS + GQ ++L + R +
Sbjct: 260 LDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKM 319
Query: 280 IVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAI 328
VKP+ VT+V+VL +C L L G + F+ NAL+DMY +CG+I
Sbjct: 320 QRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSI 379
Query: 329 QKSRKIFVLMPHKNLVSWNVMI 350
++ +F M K++ S+ MI
Sbjct: 380 DQACWVFQAMNRKDVYSYTAMI 401
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 88/331 (26%), Positives = 158/331 (47%), Gaps = 54/331 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ Y +G+ E V LF+ M + ++ D V +C+ L D R+G+ ++ Y+
Sbjct: 193 SWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYI 252
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I N+ V LD+F V N+L+D Y KC +
Sbjct: 253 IR-----NSNVN---LDVF---------------------VGNALVDMYLKCGDANFARK 283
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ K++VSWN+M++G A G +E + +M+ + ++P+ ++L VL +CA +
Sbjct: 284 VFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRL--GVKPDDVTLVAVLNSCANL 341
Query: 212 KGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++LGK +H Y+ R+ I + CG + +C VF ++ +DV + ++I
Sbjct: 342 GVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMI 401
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---LGTGSFVWN- 316
GQ ALDL ++ ++P+ VT V VL AC + + +G S ++N
Sbjct: 402 VGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNL 461
Query: 317 --------ALIDMYGRCGAIQKSRKIFVLMP 339
++D+ GR G I ++ + MP
Sbjct: 462 RPQLEHYGCMVDLLGRAGLINEAEEFIRNMP 492
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 112/222 (50%), Gaps = 24/222 (10%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
++++ +L +NA++ G A + + L+ +M+ + P+ ++ VL ACA+ +
Sbjct: 81 LAQLRTPNLPLYNAIIRGLATSN-NDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESR 139
Query: 213 GVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
V+ G+ +HG YV + + C + + VF+ RD+V W ++I
Sbjct: 140 AVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQ 199
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LG 309
+V+ G + + L ++ N++ + +T+V VL +C +L L G +
Sbjct: 200 GYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVN 259
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
FV NAL+DMY +CG +RK+F MP KN+VSWN MIS
Sbjct: 260 LDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMIS 301
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 30/188 (15%)
Query: 193 DMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH----------HIHLSTACGFVIC-- 240
D P+ +S L C +KG+K IH +++ LS C +
Sbjct: 17 DFNPHKLSFLSTLQTCKSIKGLK---QIHASIIKTMPSPDAQLTISTRLSALCAQSLPID 73
Query: 241 ---SCSVFNQLSTRDVVVWNSIISAFVRSGQ-VVDALDLLRDVIVANVKPNTVTIVSVLP 296
+ S+ QL T ++ ++N+II S ++ L + + ++ + P+ TI VL
Sbjct: 74 PRYALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLK 133
Query: 297 ACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
AC + A+ +G L + +V N L+ MY C I+ +RK+F P ++LVS
Sbjct: 134 ACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVS 193
Query: 346 WNVMISVY 353
W MI Y
Sbjct: 194 WTTMIQGY 201
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 104/240 (43%), Gaps = 54/240 (22%)
Query: 1 MELGIQVHAHLIV-CGVELCAFLGSQLLEVF---------------------CNWTSMMG 38
+ LG ++H ++I V L F+G+ L++++ +W SM+
Sbjct: 242 LRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMIS 301
Query: 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
G ++E + +F M GV+PD V +C+ L +GK V+ Y+ +
Sbjct: 302 GLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRA 361
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
+ + L+D++ KCG ++ +F+ M+ +
Sbjct: 362 DGFIGNALVDMYAKCGSIDQACWVFQAMN------------------------------R 391
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
KD+ S+ AM+ G A+ G + +L EM + ++P+ ++ GVL AC+ V V+ G+
Sbjct: 392 KDVYSYTAMIVGLAMHGQGGKALDLFSEMP--KMGIEPDEVTFVGVLTACSHVGLVEEGR 449
>gi|449522418|ref|XP_004168223.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Cucumis sativus]
Length = 743
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 170/345 (49%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ Y+ +G EEI+ L M + ++PD A + D R+GK V+ M
Sbjct: 215 SWNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQTFCSALSASAIKGDLRLGKLVHGLM 274
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + ++ D V ++L+ Y +CR L ++
Sbjct: 275 LK------------------------------DGLNIDQHVESALVVLYLRCRCLDPAYK 304
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +KD+V W AM++G ++ + +MI+++++P+T +L+ LAACAQ+
Sbjct: 305 VFKSTTEKDVVMWTAMISGLVQNDCADKALGVF--YQMIESNVKPSTATLASGLAACAQL 362
Query: 212 KGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSII 260
+G +IHGYVLR I L C + SCS+FN++ +D+V WN+I+
Sbjct: 363 GCCDIGASIHGYVLRQGIMLDIPAQNSLVTMYAKCNKLQQSCSIFNKMVEKDLVSWNAIV 422
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW----- 315
+ ++G + + ++ + ++P+++T+ S+L AC AL QG +FV
Sbjct: 423 AGHAKNGYLSKGIFFFNEMRKSFLRPDSITVTSLLQACGSAGALCQGKWIHNFVLRSSLI 482
Query: 316 ------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
AL+DMY +CG ++ ++K F M ++LV+W+ +I YG
Sbjct: 483 PCIMTETALVDMYFKCGNLENAQKCFDCMLQRDLVAWSTLIVGYG 527
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/391 (25%), Positives = 176/391 (45%), Gaps = 78/391 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G+ +H ++V G+ +++GS L+ + WT+++G Y+
Sbjct: 68 GLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSR 127
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G + ++F M + G++P + S+L ++ +I FE
Sbjct: 128 EGDIDIAFSMFKQMRESGIQPTSVTLLSLLPGISKLPLLLC---LHCLIILHGFE----- 179
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
D ++NS+++ Y KC + + F I +D+V
Sbjct: 180 -------------------------SDLALSNSMVNMYGKCGRIADARRLFESIGCRDIV 214
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SWN++L+ Y+ G EE+ LL M++ D++P+ + L+A A ++LGK +HG
Sbjct: 215 SWNSLLSAYSKIGATEEILQLLQAMKI--EDIKPDKQTFCSALSASAIKGDLRLGKLVHG 272
Query: 223 YVLR------HHIHLSTACGFVICSC-----SVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+L+ H+ + ++ C C VF + +DVV+W ++IS V++
Sbjct: 273 LMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVFKSTTEKDVVMWTAMISGLVQNDCADK 332
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALID 320
AL + +I +NVKP+T T+ S L AC +L L QG+ N+L+
Sbjct: 333 ALGVFYQMIESNVKPSTATLASGLAACAQLGCCDIGASIHGYVLRQGIMLDIPAQNSLVT 392
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
MY +C +Q+S IF M K+LVSWN +++
Sbjct: 393 MYAKCNKLQQSCSIFNKMVEKDLVSWNAIVA 423
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 149/329 (45%), Gaps = 55/329 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT+M+ ++ + +FY MI+ V+P AC++L +G ++ Y+
Sbjct: 317 WTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLGCCDIGASIHGYV- 375
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
L + + D NSL+ YAKC L+ S
Sbjct: 376 -----------------------------LRQGIMLDIPAQNSLVTMYAKCNKLQQSCSI 406
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+K+ +KDLVSWNA++AG+A G+ + +EM ++ ++P++I+++ +L AC
Sbjct: 407 FNKMVEKDLVSWNAIVAGHAKNGYLSKGIFFFNEMR--KSFLRPDSITVTSLLQACGSAG 464
Query: 213 GVKLGKAIHGYVLRHH----IHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ GK IH +VLR I TA CG + + F+ + RD+V W+++I
Sbjct: 465 ALCQGKWIHNFVLRSSLIPCIMTETALVDMYFKCGNLENAQKCFDCMLQRDLVAWSTLIV 524
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-----TGSFVWN 316
+ +G+ AL + + ++PN V +SVL AC + +GL T F +
Sbjct: 525 GYGFNGKGEIALRKYSEFLGTGMEPNHVIFISVLSACSHGGLISKGLSIYESMTKDFRMS 584
Query: 317 A-------LIDMYGRCGAIQKSRKIFVLM 338
++D+ R G + ++ + +M
Sbjct: 585 PNLEHRACVVDLLSRAGKVDEAYSFYKMM 613
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/343 (20%), Positives = 150/343 (43%), Gaps = 59/343 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
++ S++ + G + +++ + M + D + P ++KAC+ L + G ++ +
Sbjct: 16 SFNSLVSRLSYQGAHHQVLQTYISMQKTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQSV 75
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ +GL D + +SLI FYAK + +
Sbjct: 76 V--------------------------VNGL----SHDSYIGSSLISFYAKFGCIHLGRK 105
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + ++++V W ++ Y+ G + ++ +M ++ +QP +++L +L +++
Sbjct: 106 VFDTMLKRNVVPWTTIIGSYSREGDIDIAFSMFKQMR--ESGIQPTSVTLLSLLPGISKL 163
Query: 212 K------------GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
G + A+ + +++ CG + + +F + RD+V WNS+
Sbjct: 164 PLLLCLHCLIILHGFESDLALSNSM----VNMYGKCGRIADARRLFESIGCRDIVSWNSL 219
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----LKLAA------LPQGL 308
+SA+ + G + L LL+ + + ++KP+ T S L A L+L L GL
Sbjct: 220 LSAYSKIGATEEILQLLQAMKIEDIKPDKQTFCSALSASAIKGDLRLGKLVHGLMLKDGL 279
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
V +AL+ +Y RC + + K+F K++V W MIS
Sbjct: 280 NIDQHVESALVVLYLRCRCLDPAYKVFKSTTEKDVVMWTAMIS 322
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 105/210 (50%), Gaps = 21/210 (10%)
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
S+N++++ + G +V L + M +T Q + + + AC + G ++H
Sbjct: 16 SFNSLVSRLSYQGAHHQV--LQTYISMQKTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQ 73
Query: 223 YV----LRHHIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V L H ++ ++ G + VF+ + R+VV W +II ++ R G +
Sbjct: 74 SVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDI 133
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ--------GLGTGSFVWNALIDMYG 323
A + + + + ++P +VT++S+LP KL L G + + N++++MYG
Sbjct: 134 AFSMFKQMRESGIQPTSVTLLSLLPGISKLPLLLCLHCLIILHGFESDLALSNSMVNMYG 193
Query: 324 RCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+CG I +R++F + +++VSWN ++S Y
Sbjct: 194 KCGRIADARRLFESIGCRDIVSWNSLLSAY 223
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 80/203 (39%), Gaps = 32/203 (15%)
Query: 19 CAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL 78
C+ + + +W +++ + GY + + F M +RPD + +AC
Sbjct: 404 CSIFNKMVEKDLVSWNAIVAGHAKNGYLSKGIFFFNEMRKSFLRPDSITVTSLLQACGSA 463
Query: 79 KDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLID 138
GK ++++++ + L+D++ KCG +E F+ M
Sbjct: 464 GALCQGKWIHNFVLRSSLIPCIMTETALVDMYFKCGNLENAQKCFDCM------------ 511
Query: 139 FYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT 198
Q+DLV+W+ ++ GY G E L E + T M+PN
Sbjct: 512 ------------------LQRDLVAWSTLIVGYGFNGKGE--IALRKYSEFLGTGMEPNH 551
Query: 199 ISLSGVLAACAQVKGVKLGKAIH 221
+ VL+AC+ + G +I+
Sbjct: 552 VIFISVLSACSHGGLISKGLSIY 574
>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
Length = 746
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 110/463 (23%), Positives = 194/463 (41%), Gaps = 117/463 (25%)
Query: 7 VHAHLIVCGVELCAFLGSQLLEV---------------------FCNWTSMMGMYNVLGY 45
+H +IV G++ FL + L+ V W+SM+ MY+ GY
Sbjct: 71 IHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGY 130
Query: 46 YEEIVNLFY-LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
EE + +F L G P+ FV V +AC++L G ++ +++ F+ + V
Sbjct: 131 SEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGT 190
Query: 105 PLLDLF-------------------------------IKCGRMEITSGLFEEMDQ----- 128
L+D + KCGR ++ LF +M +
Sbjct: 191 SLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVP 250
Query: 129 -----------------------------------DFLVNNSLIDFYAKCRYLKVSHCKF 153
D V N LIDFY KC +K F
Sbjct: 251 DRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLF 310
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG 213
++ K+++SW M++GY F E L EM + +P+ + + VL +C +
Sbjct: 311 DQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRL--GWKPDGFACTSVLTSCGSREA 368
Query: 214 VKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISA 262
++ G+ +H Y ++ + I + +I + VF+ ++ ++V+ +N++I
Sbjct: 369 LEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEG 428
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTG 311
+ ++ +AL+L ++ V KPN T +++ A LA+L GL
Sbjct: 429 YSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFC 488
Query: 312 SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
FV NAL+DMY +CG+I+++RK+F +++V WN MIS +
Sbjct: 489 PFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHA 531
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/396 (23%), Positives = 165/396 (41%), Gaps = 76/396 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF--CN-------------------WTSMMGM 39
+E G Q+HA+++ G E+ + + L++ + CN WT+M+
Sbjct: 268 LEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISG 327
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y + E + LF M G +PD F C V +C + G+ V+ Y I E
Sbjct: 328 YMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLES- 386
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D V N LID YAK L + F + ++
Sbjct: 387 -----------------------------DEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQ 417
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+++S+NAM+ GY+ E L EM + +PN + + ++ A + + ++ G+
Sbjct: 418 NVISYNAMIEGYSSQEKLSEALELFHEMRV--RLQKPNEFTFAALITAASNLASLRHGQQ 475
Query: 220 IHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
H +V + + CG + + +FN RDVV WNS+IS + G+
Sbjct: 476 FHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGE 535
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-----------TGSFVWNA 317
+AL + R+++ ++PN VT V+VL AC + GL G+ +
Sbjct: 536 AEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPGFGIKPGTEHYAC 595
Query: 318 LIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
++ + GR G + ++++ MP + W ++S
Sbjct: 596 VVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSA 631
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 138/273 (50%), Gaps = 28/273 (10%)
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+ P++ I G++ I SGL D + N LI+ +K + + F K+ K+L+
Sbjct: 62 RNPIIHYKIIHGQI-IVSGL----QSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLI 116
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+W++M++ Y+ G+ EE + +++ ++ PN L+ V+ AC Q+ V+ G +HG
Sbjct: 117 TWSSMVSMYSQQGYSEEALMVFVDLQR-KSGEHPNEFVLASVIRACTQLGVVEKGAQLHG 175
Query: 223 YVLR----HHIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+V+R +++ T+ G + + VF+QLS + V W +II+ + + G+
Sbjct: 176 FVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAV 235
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW-----------NALID 320
+L+L + NV P+ + SVL AC L L G ++V N LID
Sbjct: 236 SLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLID 295
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
Y +C ++ RK+F M KN++SW MIS Y
Sbjct: 296 FYTKCNRVKAGRKLFDQMVVKNIISWTTMISGY 328
>gi|449442767|ref|XP_004139152.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Cucumis sativus]
Length = 743
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 170/345 (49%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ Y+ +G EEI+ L M + ++PD A + D R+GK V+ M
Sbjct: 215 SWNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQTFCSALSASAIKGDLRLGKLVHGLM 274
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + ++ D V ++L+ Y +CR L ++
Sbjct: 275 LK------------------------------DGLNIDQHVESALVVLYLRCRCLDPAYK 304
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +KD+V W AM++G ++ + +MI+++++P+T +L+ LAACAQ+
Sbjct: 305 VFKSTTEKDVVMWTAMISGLVQNDCADKALGVF--YQMIESNVKPSTATLASGLAACAQL 362
Query: 212 KGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSII 260
+G +IHGYVLR I L C + SCS+FN++ +D+V WN+I+
Sbjct: 363 GCCDIGASIHGYVLRQGIMLDIPAQNSLVTMYAKCNKLQQSCSIFNKMVEKDLVSWNAIV 422
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW----- 315
+ ++G + + ++ + ++P+++T+ S+L AC AL QG +FV
Sbjct: 423 AGHAKNGYLSKGIFFFNEMRKSFLRPDSITVTSLLQACGSAGALCQGKWIHNFVLRSSLI 482
Query: 316 ------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
AL+DMY +CG ++ ++K F M ++LV+W+ +I YG
Sbjct: 483 PCIMTETALVDMYFKCGNLENAQKCFDCMLQRDLVAWSTLIVGYG 527
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/391 (25%), Positives = 176/391 (45%), Gaps = 78/391 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G+ +H ++V G+ +++GS L+ + WT+++G Y+
Sbjct: 68 GLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSR 127
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G + ++F M + G++P + S+L ++ +I FE
Sbjct: 128 EGDIDIAFSMFKQMRESGIQPTSVTLLSLLPGISKLPLLLC---LHCLIILHGFE----- 179
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
D ++NS+++ Y KC + + F I +D+V
Sbjct: 180 -------------------------SDLALSNSMVNMYGKCGRIADARRLFQSIDCRDIV 214
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SWN++L+ Y+ G EE+ LL M++ D++P+ + L+A A ++LGK +HG
Sbjct: 215 SWNSLLSAYSKIGATEEILQLLQAMKI--EDIKPDKQTFCSALSASAIKGDLRLGKLVHG 272
Query: 223 YVLR------HHIHLSTACGFVICSC-----SVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+L+ H+ + ++ C C VF + +DVV+W ++IS V++
Sbjct: 273 LMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVFKSTTEKDVVMWTAMISGLVQNDCADK 332
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALID 320
AL + +I +NVKP+T T+ S L AC +L L QG+ N+L+
Sbjct: 333 ALGVFYQMIESNVKPSTATLASGLAACAQLGCCDIGASIHGYVLRQGIMLDIPAQNSLVT 392
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
MY +C +Q+S IF M K+LVSWN +++
Sbjct: 393 MYAKCNKLQQSCSIFNKMVEKDLVSWNAIVA 423
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 149/329 (45%), Gaps = 55/329 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT+M+ ++ + +FY MI+ V+P AC++L +G ++ Y+
Sbjct: 317 WTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLGCCDIGASIHGYV- 375
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
L + + D NSL+ YAKC L+ S
Sbjct: 376 -----------------------------LRQGIMLDIPAQNSLVTMYAKCNKLQQSCSI 406
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+K+ +KDLVSWNA++AG+A G+ + +EM ++ ++P++I+++ +L AC
Sbjct: 407 FNKMVEKDLVSWNAIVAGHAKNGYLSKGIFFFNEMR--KSFLRPDSITVTSLLQACGSAG 464
Query: 213 GVKLGKAIHGYVLRHH----IHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ GK IH +VLR I TA CG + + F+ + RD+V W+++I
Sbjct: 465 ALCQGKWIHNFVLRSSLIPCIMTETALVDMYFKCGNLENAQKCFDCMLQRDLVAWSTLIV 524
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-----TGSFVWN 316
+ +G+ AL + + ++PN V +SVL AC + +GL T F +
Sbjct: 525 GYGFNGKGEIALRKYSEFLGTGMEPNHVIFISVLSACSHGGLISKGLSIYESMTKDFRMS 584
Query: 317 A-------LIDMYGRCGAIQKSRKIFVLM 338
++D+ R G + ++ + +M
Sbjct: 585 PNLEHRACVVDLLSRAGKVDEAYSFYKMM 613
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/343 (20%), Positives = 150/343 (43%), Gaps = 59/343 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
++ S++ + G + +++ + M + D + P ++KAC+ L + G ++ +
Sbjct: 16 SFNSLVSRLSYQGAHHQVLQTYISMQKTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQSV 75
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ +GL D + +SLI FYAK + +
Sbjct: 76 V--------------------------VNGL----SHDSYIGSSLISFYAKFGCIHLGRK 105
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + ++++V W ++ Y+ G + ++ +M ++ +QP +++L +L +++
Sbjct: 106 VFDTMLKRNVVPWTTIIGSYSREGDIDIAFSMFKQMR--ESGIQPTSVTLLSLLPGISKL 163
Query: 212 K------------GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
G + A+ + +++ CG + + +F + RD+V WNS+
Sbjct: 164 PLLLCLHCLIILHGFESDLALSNSM----VNMYGKCGRIADARRLFQSIDCRDIVSWNSL 219
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----LKLAA------LPQGL 308
+SA+ + G + L LL+ + + ++KP+ T S L A L+L L GL
Sbjct: 220 LSAYSKIGATEEILQLLQAMKIEDIKPDKQTFCSALSASAIKGDLRLGKLVHGLMLKDGL 279
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
V +AL+ +Y RC + + K+F K++V W MIS
Sbjct: 280 NIDQHVESALVVLYLRCRCLDPAYKVFKSTTEKDVVMWTAMIS 322
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 105/210 (50%), Gaps = 21/210 (10%)
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
S+N++++ + G +V L + M +T Q + + + AC + G ++H
Sbjct: 16 SFNSLVSRLSYQGAHHQV--LQTYISMQKTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQ 73
Query: 223 YV----LRHHIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V L H ++ ++ G + VF+ + R+VV W +II ++ R G +
Sbjct: 74 SVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDI 133
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ--------GLGTGSFVWNALIDMYG 323
A + + + + ++P +VT++S+LP KL L G + + N++++MYG
Sbjct: 134 AFSMFKQMRESGIQPTSVTLLSLLPGISKLPLLLCLHCLIILHGFESDLALSNSMVNMYG 193
Query: 324 RCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+CG I +R++F + +++VSWN ++S Y
Sbjct: 194 KCGRIADARRLFQSIDCRDIVSWNSLLSAY 223
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 80/203 (39%), Gaps = 32/203 (15%)
Query: 19 CAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL 78
C+ + + +W +++ + GY + + F M +RPD + +AC
Sbjct: 404 CSIFNKMVEKDLVSWNAIVAGHAKNGYLSKGIFFFNEMRKSFLRPDSITVTSLLQACGSA 463
Query: 79 KDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLID 138
GK ++++++ + L+D++ KCG +E F+ M
Sbjct: 464 GALCQGKWIHNFVLRSSLIPCIMTETALVDMYFKCGNLENAQKCFDCM------------ 511
Query: 139 FYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT 198
Q+DLV+W+ ++ GY G E L E + T M+PN
Sbjct: 512 ------------------LQRDLVAWSTLIVGYGFNGKGE--IALRKYSEFLGTGMEPNH 551
Query: 199 ISLSGVLAACAQVKGVKLGKAIH 221
+ VL+AC+ + G +I+
Sbjct: 552 VIFISVLSACSHGGLISKGLSIY 574
>gi|302791495|ref|XP_002977514.1| hypothetical protein SELMODRAFT_107304 [Selaginella moellendorffii]
gi|300154884|gb|EFJ21518.1| hypothetical protein SELMODRAFT_107304 [Selaginella moellendorffii]
Length = 673
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 91/344 (26%), Positives = 160/344 (46%), Gaps = 53/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ N G++ + ++ M +GV+P +CS L+D GK ++D +
Sbjct: 81 SWNSMIAALNEHGHFARALEIYRRMEPEGVKPSDISYIHALCSCSGLRDLEQGKSIHDRV 140
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F D V N+L++ Y+KCR L ++
Sbjct: 141 ATDGF------------------------------DTQVFVGNALVNMYSKCRRLDLARE 170
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I KD+VSWN+M+A ++ G +E M + + ++P I+L L A +
Sbjct: 171 AFERIDSKDVVSWNSMIAAHSQLGGSDEALETYRRM-IGEERLEPTKITLVHALGAALSL 229
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVI------CSC-----SVFNQLSTRDVVVWNSII 260
+ K + +R + G + C C +VF+++ R+VV W+ +I
Sbjct: 230 RSAGDTKLLQEDAIRLGLEGDLLVGSALVSALGKCGCLDQARAVFDRMERRNVVSWSGLI 289
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------- 313
+A G+ DA++L + + ++PN VT++SVL AC A+ +G T +
Sbjct: 290 AALAEHGRGRDAIELFHRMDLDGIQPNEVTLLSVLEACASTGAIAEGRRTHARVSGCGFE 349
Query: 314 ----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V NAL++MYG+CG + +R +F M +N+VSW M++ Y
Sbjct: 350 AETNVANALVNMYGKCGHLGSARTVFDAMTWRNVVSWTAMLAGY 393
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 82/396 (20%), Positives = 164/396 (41%), Gaps = 78/396 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G +H + G + F+G+ L+ ++ +W SM+
Sbjct: 130 LEQGKSIHDRVATDGFDTQVFVGNALVNMYSKCRRLDLAREAFERIDSKDVVSWNSMIAA 189
Query: 40 YNVLGYYEEIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
++ LG +E + + MI ++ + P A L+ K + + I + EG
Sbjct: 190 HSQLGGSDEALETYRRMIGEERLEPTKITLVHALGAALSLRSAGDTKLLQEDAIRLGLEG 249
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
D LV ++L+ KC L + F ++++
Sbjct: 250 ------------------------------DLLVGSALVSALGKCGCLDQARAVFDRMER 279
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+++VSW+ ++A A G + L M++ +QPN ++L VL ACA + G+
Sbjct: 280 RNVVSWSGLIAALAEHGRGRDAIELFHRMDL--DGIQPNEVTLLSVLEACASTGAIAEGR 337
Query: 219 AIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
H V +++ A CG + + +VF+ ++ R+VV W ++++ + G
Sbjct: 338 RTHARVSGCGFEAETNVANALVNMYGKCGHLGSARTVFDAMTWRNVVSWTAMLAGYAHHG 397
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGT-----GSFV-------W 315
+A + + + + ++PN +T VSVL C + GL G F +
Sbjct: 398 HTEEARRVFKAMALEGIQPNVITFVSVLFNCSHAGVVSDGLEQFHIMVGDFGIVPVTEHY 457
Query: 316 NALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ID+ GR G ++++ ++ MP + +WN ++
Sbjct: 458 GCVIDLLGRAGWLEEAEELLRTMPVEPDKAAWNSLL 493
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 123/249 (49%), Gaps = 25/249 (10%)
Query: 127 DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDE 186
D D V +LI A+C L+ + F +I K++VSWN+M+A G +
Sbjct: 45 DADVTVATALISALARCGDLEGAREAFDRIPAKNVVSWNSMIAALNEHGHFARALEIYRR 104
Query: 187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTAC 235
ME ++P+ IS L +C+ ++ ++ GK+IH +V +++ + C
Sbjct: 105 ME--PEGVKPSDISYIHALCSCSGLRDLEQGKSIHDRVATDGFDTQVFVGNALVNMYSKC 162
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSV 294
+ + F ++ ++DVV WNS+I+A + G +AL+ R +I ++P +T+V
Sbjct: 163 RRLDLAREAFERIDSKDVVSWNSMIAAHSQLGGSDEALETYRRMIGEERLEPTKITLVHA 222
Query: 295 LPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
L A L L A+ GL V +AL+ G+CG + ++R +F M +N+
Sbjct: 223 LGAALSLRSAGDTKLLQEDAIRLGLEGDLLVGSALVSALGKCGCLDQARAVFDRMERRNV 282
Query: 344 VSWNVMISV 352
VSW+ +I+
Sbjct: 283 VSWSGLIAA 291
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 25/184 (13%)
Query: 195 QPNTISLSGVLAACA--------------QVKGVKLGKAIHGYVLRHHIHLSTACGFVIC 240
+PN + + +L ACA Q + V G V I CG +
Sbjct: 7 RPNAVIFTRLLEACARSPEKSDRSRLAEIQFRVVATGFDADVTVATALISALARCGDLEG 66
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ F+++ ++VV WNS+I+A G AL++ R + VKP+ ++ + L +C
Sbjct: 67 AREAFDRIPAKNVVSWNSMIAALNEHGHFARALEIYRRMEPEGVKPSDISYIHALCSCSG 126
Query: 301 LAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L L Q G T FV NAL++MY +C + +R+ F + K++VSWN M
Sbjct: 127 LRDLEQGKSIHDRVATDGFDTQVFVGNALVNMYSKCRRLDLAREAFERIDSKDVVSWNSM 186
Query: 350 ISVY 353
I+ +
Sbjct: 187 IAAH 190
>gi|449460860|ref|XP_004148162.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
chloroplastic-like [Cucumis sativus]
Length = 489
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 169/336 (50%), Gaps = 62/336 (18%)
Query: 22 LGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY 81
+G++ F W S++ Y LG YE+ + L++ M ++GV PD+F P+V KAC +
Sbjct: 115 MGNRNFSAFA-WNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSI 173
Query: 82 RVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYA 141
++G+ V+ +++ F G D V N+L+D Y+
Sbjct: 174 QIGEAVHRHVVRSGFAG------------------------------DVFVLNALVDMYS 203
Query: 142 KCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISL 201
KC + + F +I+ KD+VSWN+ML GY G E ++ D +MIQ +P++++L
Sbjct: 204 KCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDIFD--QMIQEGYEPDSVAL 261
Query: 202 SGVLAACAQVKGVKLGKAIHGYVLRHHI--HLSTA---------CGFVICSCSVFNQLST 250
S +L + + +K IHG+V+RH + +LS A CG + + +F Q+
Sbjct: 262 STLL---SNISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQ 318
Query: 251 RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG--- 307
+D+V WNSIISA S + + +++ + V P+ VT VS+L C L + +G
Sbjct: 319 KDMVSWNSIISAHFNSAEALTYFEVMESL---GVSPDGVTFVSLLSTCAHLGLVKEGGKL 375
Query: 308 --LGTGSF-------VWNALIDMYGRCGAIQKSRKI 334
L G + + ++++YGR G I+++ KI
Sbjct: 376 YFLMKGKYGIRPTIEHYACMVNLYGRAGMIEEAYKI 411
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 134/243 (55%), Gaps = 23/243 (9%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDL--VSWNAMLAGYALGGFREEVTNLLDEMEM 189
+++ L+ YA Y++ +H F ++ ++ +WN++++GYA G E+ L +ME
Sbjct: 91 ISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQME- 149
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFV 238
+ ++P+ + VL AC + +++G+A+H +V+R + + + CG +
Sbjct: 150 -EEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCI 208
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP-- 296
+ + VF+Q+ +D+V WNS+++ + R G +ALD+ +I +P++V + ++L
Sbjct: 209 VRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLLSNI 268
Query: 297 ACLKLA------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ +K + G+ + N+LI MY +CG + +++ +F MP K++VSWN +I
Sbjct: 269 SSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKDMVSWNSII 328
Query: 351 SVY 353
S +
Sbjct: 329 SAH 331
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 24/177 (13%)
Query: 201 LSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLST-------ACGFVICSCSVFNQLS 249
S +L C Q++ + G IH + LR ++ +S+ + G++ + VF+++
Sbjct: 57 FSSLLELCYQLQAIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMG 116
Query: 250 TRD--VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-- 305
R+ WNS+IS + G DAL L + V+P+ T VL AC + ++
Sbjct: 117 NRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIG 176
Query: 306 ---------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G FV NAL+DMY +CG I ++RK+F + +K++VSWN M++ Y
Sbjct: 177 EAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGY 233
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/242 (19%), Positives = 100/242 (41%), Gaps = 59/242 (24%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+++G VH H++ G F+ + L++++ +W SM+
Sbjct: 173 IQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTG 232
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G + E +++F MI +G PD + S +K +++ ++ ++I E N
Sbjct: 233 YTRHGLHFEALDIFDQMIQEGYEPDSVALSTLLSNISSMK-FKL--HIHGWVIRHGVEWN 289
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ L+ ++ KCG++ LF++M QK
Sbjct: 290 LSIANSLIVMYAKCGKLNRAKWLFQQM------------------------------PQK 319
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSWN++++ + E + ME + + P+ ++ +L+ CA + VK G
Sbjct: 320 DMVSWNSIISAHFNSA---EALTYFEVMESL--GVSPDGVTFVSLLSTCAHLGLVKEGGK 374
Query: 220 IH 221
++
Sbjct: 375 LY 376
>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
Length = 856
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 100/350 (28%), Positives = 158/350 (45%), Gaps = 57/350 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M+ + G ++E V Y M+ GVRPD ACS L+ VG++++ Y+
Sbjct: 240 TWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYV 299
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I +E+ + V ++L+D YA + +
Sbjct: 300 IKD-----------------------------DELAANSFVASALVDMYATHEQVGKARQ 330
Query: 152 KFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + K L WNAM+ GYA G EE L ME + P +++ VL ACA
Sbjct: 331 VFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARME-AEAGFVPCETTMASVLPACA 389
Query: 210 QVKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ + +A+HGYV++ + + G + +F + DVV WN+
Sbjct: 390 RSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNT 449
Query: 259 IISAFVRSGQVVDALDLLRDVIV---ANVKPNTVTIVSVLPACLKLAALPQG-------- 307
+I+ V G V DA L R++ V PN +T++++LP C LAA +G
Sbjct: 450 LITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAV 509
Query: 308 ---LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L T V +AL+DMY +CG + SR +F +P +N ++WNV+I YG
Sbjct: 510 RHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYG 559
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/348 (23%), Positives = 141/348 (40%), Gaps = 58/348 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M+ Y G EE + LF M + G P V AC+ + + + V+ Y+
Sbjct: 345 WNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYV 404
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ GN V N+L+D YA+ V+
Sbjct: 405 VKRGMAGN------------------------------RFVQNALMDMYARLGKTDVARR 434
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNTISLSGVLAACAQ 210
F+ + D+VSWN ++ G + G + L EM+ ++ + PN I+L +L CA
Sbjct: 435 IFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAI 494
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACG------FVICSC-----SVFNQLSTRDVVVWNSI 259
+ GK IHGY +RH + A G + C C +VF++L R+ + WN +
Sbjct: 495 LAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVL 554
Query: 260 ISAFVRSGQVVDALDLL-RDVIVANVKPNTVTIVSVLPACLKLAALPQGLG--------- 309
I A+ G +A L R +PN VT ++ L AC + +GL
Sbjct: 555 IMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDH 614
Query: 310 ---TGSFVWNALIDMYGRCGAIQKSRKIFVLMP--HKNLVSWNVMISV 352
+ ++D+ GR G + ++ + M + + +W+ M+
Sbjct: 615 GVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGA 662
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 136/325 (41%), Gaps = 65/325 (20%)
Query: 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLF 123
DH P K+ + L+D R + ++ A ++R LL
Sbjct: 58 DHSALPPAIKSAAALRDARSARAIH----------AAALRRGLLH--------------- 92
Query: 124 EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK--DLVSWNAMLAGYALGGFREEVT 181
V N+L+ YA+C L + F I D VS+N++++ L FR
Sbjct: 93 ---RPSPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCL--FRRWDH 147
Query: 182 NLLDEMEMIQTDMQPNTISLSGVLAAC----AQVKGVKLGKAIHGYVLRH---HIHLSTA 234
L M+ + +L VL A A V+LG+ H + L++ H H A
Sbjct: 148 ALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFA 207
Query: 235 ----------CGFVICSCSVFNQLSTR--DVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
G V + +F + DVV WN+++S V+SG +A+ L D++
Sbjct: 208 FNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVAL 267
Query: 283 NVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNALIDMYGRCGAIQK 330
V+P+ VT S LPAC +L L G L SFV +AL+DMY + K
Sbjct: 268 GVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGK 327
Query: 331 SRKIFVLMPH--KNLVSWNVMISVY 353
+R++F ++P K L WN MI Y
Sbjct: 328 ARQVFDMVPDSGKQLGMWNAMICGY 352
>gi|449499688|ref|XP_004160887.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g25270, chloroplastic-like [Cucumis sativus]
Length = 489
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 169/336 (50%), Gaps = 62/336 (18%)
Query: 22 LGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY 81
+G++ F W S++ Y LG YE+ + L++ M ++GV PD+F P+V KAC +
Sbjct: 115 MGNRNFSAFA-WNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSI 173
Query: 82 RVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYA 141
++G+ V+ +++ F G D V N+L+D Y+
Sbjct: 174 QIGEAVHRHVVRSGFAG------------------------------DVFVLNALVDMYS 203
Query: 142 KCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISL 201
KC + + F +I+ KD+VSWN+ML GY G E ++ D +MIQ +P++++L
Sbjct: 204 KCGCIVRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDIFD--QMIQEGYEPDSVAL 261
Query: 202 SGVLAACAQVKGVKLGKAIHGYVLRHHI--HLSTA---------CGFVICSCSVFNQLST 250
S +L + + +K IHG+V+RH + +LS A CG + + +F Q+
Sbjct: 262 STLL---SNISSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQ 318
Query: 251 RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG--- 307
+D+V WNSIISA S + + +++ + V P+ VT VS+L C L + +G
Sbjct: 319 KDMVSWNSIISAHFNSAEALTYFEVMESL---GVSPDGVTFVSLLSTCAHLGLVKEGXEL 375
Query: 308 --LGTGSF-------VWNALIDMYGRCGAIQKSRKI 334
L G + + ++++YGR G I+++ KI
Sbjct: 376 YFLMKGKYGIRPTIEHYACMVNLYGRAGMIEEAYKI 411
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 134/243 (55%), Gaps = 23/243 (9%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDL--VSWNAMLAGYALGGFREEVTNLLDEMEM 189
+++ L+ YA Y++ +H F ++ ++ +WN++++GYA G E+ L +ME
Sbjct: 91 ISSKLLRLYASFGYMEDAHQVFDEMGNRNFSAFAWNSLISGYAELGLYEDALALYFQME- 149
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFV 238
+ ++P+ + VL AC + +++G+A+H +V+R + + + CG +
Sbjct: 150 -EEGVEPDNFTFPRVLKACGGIGSIQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCI 208
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP-- 296
+ + VF+Q+ +D+V WNS+++ + R G +ALD+ +I +P++V + ++L
Sbjct: 209 VRARKVFDQIEYKDIVSWNSMLTGYTRHGLHFEALDIFDQMIQEGYEPDSVALSTLLSNI 268
Query: 297 ACLKLA------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ +K + G+ + N+LI MY +CG + +++ +F MP K++VSWN +I
Sbjct: 269 SSMKFKLHIHGWVIRHGVEWNLSIANSLIVMYAKCGKLNRAKWLFQQMPQKDMVSWNSII 328
Query: 351 SVY 353
S +
Sbjct: 329 SAH 331
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 24/177 (13%)
Query: 201 LSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLST-------ACGFVICSCSVFNQLS 249
S +L C Q++ + G IH + LR ++ +S+ + G++ + VF+++
Sbjct: 57 FSSLLELCYQLQAIHHGIRIHRLIPTNLLRRNVGISSKLLRLYASFGYMEDAHQVFDEMG 116
Query: 250 TRD--VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-- 305
R+ WNS+IS + G DAL L + V+P+ T VL AC + ++
Sbjct: 117 NRNFSAFAWNSLISGYAELGLYEDALALYFQMEEEGVEPDNFTFPRVLKACGGIGSIQIG 176
Query: 306 ---------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G FV NAL+DMY +CG I ++RK+F + +K++VSWN M++ Y
Sbjct: 177 EAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTGY 233
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/242 (19%), Positives = 100/242 (41%), Gaps = 59/242 (24%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+++G VH H++ G F+ + L++++ +W SM+
Sbjct: 173 IQIGEAVHRHVVRSGFAGDVFVLNALVDMYSKCGCIVRARKVFDQIEYKDIVSWNSMLTG 232
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G + E +++F MI +G PD + S +K +++ ++ ++I E N
Sbjct: 233 YTRHGLHFEALDIFDQMIQEGYEPDSVALSTLLSNISSMK-FKL--HIHGWVIRHGVEWN 289
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ L+ ++ KCG++ LF++M QK
Sbjct: 290 LSIANSLIVMYAKCGKLNRAKWLFQQM------------------------------PQK 319
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSWN++++ + E + ME + + P+ ++ +L+ CA + VK G
Sbjct: 320 DMVSWNSIISAHFNSA---EALTYFEVMESL--GVSPDGVTFVSLLSTCAHLGLVKEGXE 374
Query: 220 IH 221
++
Sbjct: 375 LY 376
>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
[Vitis vinifera]
gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 108/399 (27%), Positives = 182/399 (45%), Gaps = 79/399 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMY 40
E+G +HA ++ G + AF+ + L+ ++ N W +M+ Y
Sbjct: 140 EMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGY 199
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG-N 99
G +E + +F MI KG+ PD V CS LK+ VG+ V+ ++ +K G +
Sbjct: 200 FKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHA-LVEVKNLGED 258
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V LLD++ KCG M+ +F EMD ++
Sbjct: 259 ISVWNSLLDMYAKCGNMDEAQMIFYEMD------------------------------KR 288
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSW M+ GY L G L M+ ++PN ++L+ VL+ACA + +K G+
Sbjct: 289 DVVSWTTMMNGYILNGDARSALLLCQMMQF--ESVKPNFVTLASVLSACASLYSLKHGRC 346
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+HG+ +R I + C V S VF++ S + WN+IIS + +G
Sbjct: 347 LHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKTSKQRTAPWNAIISGCIHNGL 406
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------VWNA 317
A++L + +++ V PN T+ S+LPA L L Q + V
Sbjct: 407 SRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATI 466
Query: 318 LIDMYGRCGAIQKSRKIFVLMPH--KNLVSWNVMISVYG 354
LID+Y +CG+++ + IF +P K++++W+ +I+ YG
Sbjct: 467 LIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYG 505
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 105/393 (26%), Positives = 170/393 (43%), Gaps = 79/393 (20%)
Query: 6 QVHAHLIVCGVEL-------------------CAFLGSQLLEVFCN-----WTSMMGMYN 41
Q+HAH I G+ CA +L + N W +M+ MY
Sbjct: 39 QIHAHTITLGLLSSPYSHHLLSSLAAAYAMFGCAPHARKLFDELRNPSLFSWNAMIRMYT 98
Query: 42 VLGYYEEIVNLFYLMIDKGVR-PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G + + LF M+ G R PD++ P V KAC DY++
Sbjct: 99 NSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACG------------DYLL-------- 138
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
P + I + SG D D V NSL+ Y C ++V+ F ++++
Sbjct: 139 ----PEMGALIHA--RTVMSGF----DSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERT 188
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
LVSWN M+ GY G +E + D M I ++P+ ++ VL C+ +K +++G+ +
Sbjct: 189 LVSWNTMINGYFKNGCVKEALMVFDWM--IGKGIEPDCATVVSVLPVCSYLKELEVGRRV 246
Query: 221 HGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H V ++ + CG + + +F ++ RDVV W ++++ ++ +G
Sbjct: 247 HALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDA 306
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNAL 318
AL L + + +VKPN VT+ SVL AC L +L G L + V AL
Sbjct: 307 RSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETAL 366
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
IDMY +C + S ++F + WN +IS
Sbjct: 367 IDMYAKCNNVNLSFRVFSKTSKQRTAPWNAIIS 399
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/345 (23%), Positives = 153/345 (44%), Gaps = 58/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+MM Y + G + L +M + V+P+ V AC+ L + G+ ++ +
Sbjct: 292 SWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWA 351
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I K E + +V +LID YAKC + +S
Sbjct: 352 IRQKLE------------------------------SEVIVETALIDMYAKCNNVNLSFR 381
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FSK ++ WNA+++G G + L +M M D PN +L+ +L A A +
Sbjct: 382 VFSKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVD--PNDATLNSLLPAYAFL 439
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLST--RDVVVWNS 258
++ + +HGY++R I + + CG + + ++FN + +D++ W++
Sbjct: 440 TDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSA 499
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV---- 314
II+ + G A+ L ++ + VKPN +T S+L AC + +GLG F+
Sbjct: 500 IIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGLGLFKFMLEDN 559
Query: 315 --------WNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMI 350
+ +ID+ GR G ++++ ++ M + N W ++
Sbjct: 560 QMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALL 604
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 108/223 (48%), Gaps = 23/223 (10%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F +++ L SWNAM+ Y G + L +M + P+ + V+ AC
Sbjct: 79 FDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQM-LASGRRWPDNYTYPFVIKACGDYL 137
Query: 213 GVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++G IH +V + + CG + + VF+ + R +V WN++I+
Sbjct: 138 LPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMIN 197
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGT 310
+ ++G V +AL + +I ++P+ T+VSVLP C L L G LG
Sbjct: 198 GYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGE 257
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
VWN+L+DMY +CG + +++ IF M +++VSW M++ Y
Sbjct: 258 DISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGY 300
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 26/182 (14%)
Query: 198 TISLSGVLAACAQVKGVKLGKAIHGYVL---------RHHIHLSTACGFVICSCS----- 243
T +L C K + K IH + + HH+ S A + + C+
Sbjct: 18 TARYQSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMFGCAPHARK 77
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK-PNTVTIVSVLPAC---- 298
+F++L + WN++I + SG DAL L ++ + + P+ T V+ AC
Sbjct: 78 LFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYL 137
Query: 299 -------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ + G + +FV N+L+ MY CG ++ +R++F LM + LVSWN MI+
Sbjct: 138 LPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMIN 197
Query: 352 VY 353
Y
Sbjct: 198 GY 199
>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 738
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 98/346 (28%), Positives = 174/346 (50%), Gaps = 26/346 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ Y++ ++LF M+ GV+P+ P ++K+C++ K GK ++ + +
Sbjct: 99 WNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHAL 158
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHC 151
+ N V ++ ++ G M+ +F++ +D + +LI Y L +
Sbjct: 159 KLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARR 218
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I KD+VSWNAM++GY G EE EM+ + ++ PN ++ VL+AC
Sbjct: 219 LFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQ--EANVLPNKSTMVVVLSACGHT 276
Query: 212 KGVKLGKAIHGYVLRH----HIHLSTACGFVICSC-------SVFNQLSTRDVVVWNSII 260
+ +LGK I +V + ++ L+ A + C C +F+ + +DV+ WN++I
Sbjct: 277 RSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMI 336
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
+ +AL L ++ +NVKPN VT + +L AC L AL G +++
Sbjct: 337 GGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRN 396
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
W +LIDMY +CG I+ + ++F M +NL SWN M+S +
Sbjct: 397 SSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFA 442
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 144/311 (46%), Gaps = 49/311 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G +EE + FY M + V P+ V AC + +GK + ++
Sbjct: 230 SWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWV 289
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F N +++T N+LID Y KC ++
Sbjct: 290 RDNGFGSN----------------LQLT--------------NALIDMYCKCGETDIARE 319
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F I++KD++SWN M+ GY+ EE L + M ++++++PN ++ G+L ACA +
Sbjct: 320 LFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVM--LRSNVKPNDVTFLGILHACACL 377
Query: 212 KGVKLGKAIHGYV---LRHH---------IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ LGK +H Y+ LR+ I + CG + + VF + +R++ WN++
Sbjct: 378 GALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAM 437
Query: 260 ISAFVRSGQVVDALDLLRDVIVANV-KPNTVTIVSVLPACLKLAALPQGLGTGSFVWNAL 318
+S F G AL L +++ + +P+ +T V VL AC + A L + G + ++
Sbjct: 438 LSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQ-AGL---VDLGHQYFRSM 493
Query: 319 IDMYGRCGAIQ 329
I YG +Q
Sbjct: 494 IQDYGISPKLQ 504
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 110/252 (43%), Gaps = 45/252 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+G Y+ L YEE + LF +M+ V+P+ + AC+ L +GK V+ Y+
Sbjct: 331 SWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYI 390
Query: 92 -ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+++ NA + SLID YAKC ++ +
Sbjct: 391 DKNLRNSSNASLW------------------------------TSLIDMYAKCGCIEAAE 420
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + ++L SWNAML+G+A+ G E L EM + + +P+ I+ GVL+AC Q
Sbjct: 421 RVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEM-VNKGLFRPDDITFVGVLSACTQ 479
Query: 211 VKGVKLGKA-----IHGYVLRHHIH--------LSTACGFVICSCSVFNQLSTRDVVVWN 257
V LG I Y + + L+ A F + N D +W
Sbjct: 480 AGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWG 539
Query: 258 SIISAFVRSGQV 269
S++SA G+V
Sbjct: 540 SLLSACKAHGRV 551
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 58/149 (38%), Gaps = 42/149 (28%)
Query: 247 QLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ 306
Q +V +WNS+I + S + +L L ++ V+PN+ T + +C K A +
Sbjct: 90 QHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHE 149
Query: 307 G----------------------------LGTGSFV--------------WNALIDMYGR 324
G +G F + ALI Y
Sbjct: 150 GKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVS 209
Query: 325 CGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G + +R++F +P K++VSWN MIS Y
Sbjct: 210 QGCLDDARRLFDEIPVKDVVSWNAMISGY 238
>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
Length = 854
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 100/350 (28%), Positives = 158/350 (45%), Gaps = 57/350 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M+ + G ++E V Y M+ GVRPD ACS L+ VG++++ Y+
Sbjct: 238 TWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYV 297
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I +E+ + V ++L+D YA + +
Sbjct: 298 IKD-----------------------------DELAANSFVASALVDMYATHEQVGKARQ 328
Query: 152 KFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + K L WNAM+ GYA G EE L ME + P +++ VL ACA
Sbjct: 329 VFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARME-AEAGFVPCETTMASVLPACA 387
Query: 210 QVKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ + +A+HGYV++ + + G + +F + DVV WN+
Sbjct: 388 RSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNT 447
Query: 259 IISAFVRSGQVVDALDLLRDVIV---ANVKPNTVTIVSVLPACLKLAALPQG-------- 307
+I+ V G V DA L R++ V PN +T++++LP C LAA +G
Sbjct: 448 LITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAV 507
Query: 308 ---LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L T V +AL+DMY +CG + SR +F +P +N ++WNV+I YG
Sbjct: 508 RHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYG 557
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/348 (23%), Positives = 141/348 (40%), Gaps = 58/348 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M+ Y G EE + LF M + G P V AC+ + + + V+ Y+
Sbjct: 343 WNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYV 402
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ GN V N+L+D YA+ V+
Sbjct: 403 VKRGMAGN------------------------------RFVQNALMDMYARLGKTDVARR 432
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNTISLSGVLAACAQ 210
F+ + D+VSWN ++ G + G + L EM+ ++ + PN I+L +L CA
Sbjct: 433 IFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAI 492
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACG------FVICSC-----SVFNQLSTRDVVVWNSI 259
+ GK IHGY +RH + A G + C C +VF++L R+ + WN +
Sbjct: 493 LAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVL 552
Query: 260 ISAFVRSGQVVDALDLL-RDVIVANVKPNTVTIVSVLPACLKLAALPQGLG--------- 309
I A+ G +A L R +PN VT ++ L AC + +GL
Sbjct: 553 IMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDH 612
Query: 310 ---TGSFVWNALIDMYGRCGAIQKSRKIFVLMP--HKNLVSWNVMISV 352
+ ++D+ GR G + ++ + M + + +W+ M+
Sbjct: 613 GVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGA 660
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 136/325 (41%), Gaps = 65/325 (20%)
Query: 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLF 123
DH P K+ + L+D R + ++ A ++R LL
Sbjct: 56 DHSALPPAIKSAAALRDARSARAIH----------AAALRRGLLH--------------- 90
Query: 124 EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK--DLVSWNAMLAGYALGGFREEVT 181
V N+L+ YA+C L + F I D VS+N++++ L FR
Sbjct: 91 ---RPSPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCL--FRRWDH 145
Query: 182 NLLDEMEMIQTDMQPNTISLSGVLAAC----AQVKGVKLGKAIHGYVLRH---HIHLSTA 234
L M+ + +L VL A A V+LG+ H + L++ H H A
Sbjct: 146 ALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFA 205
Query: 235 ----------CGFVICSCSVFNQLSTR--DVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
G V + +F + DVV WN+++S V+SG +A+ L D++
Sbjct: 206 FNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVAL 265
Query: 283 NVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNALIDMYGRCGAIQK 330
V+P+ VT S LPAC +L L G L SFV +AL+DMY + K
Sbjct: 266 GVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGK 325
Query: 331 SRKIFVLMPH--KNLVSWNVMISVY 353
+R++F ++P K L WN MI Y
Sbjct: 326 ARQVFDMVPDSGKQLGMWNAMICGY 350
>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
Length = 854
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 100/350 (28%), Positives = 158/350 (45%), Gaps = 57/350 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M+ + G ++E V Y M+ GVRPD ACS L+ VG++++ Y+
Sbjct: 238 TWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYV 297
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I +E+ + V ++L+D YA + +
Sbjct: 298 IKD-----------------------------DELAANSFVASALVDMYATHEQVGKARQ 328
Query: 152 KFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + K L WNAM+ GYA G EE L ME + P +++ VL ACA
Sbjct: 329 VFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARME-AEAGFVPCETTMASVLPACA 387
Query: 210 QVKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ + +A+HGYV++ + + G + +F + DVV WN+
Sbjct: 388 RSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNT 447
Query: 259 IISAFVRSGQVVDALDLLRDVIV---ANVKPNTVTIVSVLPACLKLAALPQG-------- 307
+I+ V G V DA L R++ V PN +T++++LP C LAA +G
Sbjct: 448 LITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAV 507
Query: 308 ---LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L T V +AL+DMY +CG + SR +F +P +N ++WNV+I YG
Sbjct: 508 RHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYG 557
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/348 (23%), Positives = 141/348 (40%), Gaps = 58/348 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M+ Y G EE + LF M + G P V AC+ + + + V+ Y+
Sbjct: 343 WNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYV 402
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ GN V N+L+D YA+ V+
Sbjct: 403 VKRGMAGN------------------------------RFVQNALMDMYARLGKTDVARR 432
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNTISLSGVLAACAQ 210
F+ + D+VSWN ++ G + G + L EM+ ++ + PN I+L +L CA
Sbjct: 433 IFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAI 492
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACG------FVICSC-----SVFNQLSTRDVVVWNSI 259
+ GK IHGY +RH + A G + C C +VF++L R+ + WN +
Sbjct: 493 LAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVL 552
Query: 260 ISAFVRSGQVVDALDLL-RDVIVANVKPNTVTIVSVLPACLKLAALPQGLG--------- 309
I A+ G +A L R +PN VT ++ L AC + +GL
Sbjct: 553 IMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDH 612
Query: 310 ---TGSFVWNALIDMYGRCGAIQKSRKIFVLMP--HKNLVSWNVMISV 352
+ ++D+ GR G + ++ + M + + +W+ M+
Sbjct: 613 GVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGA 660
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 136/325 (41%), Gaps = 65/325 (20%)
Query: 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLF 123
DH P K+ + L+D R + ++ A ++R LL
Sbjct: 56 DHSALPPAIKSAAALRDARSARAIH----------AAALRRGLLH--------------- 90
Query: 124 EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK--DLVSWNAMLAGYALGGFREEVT 181
V N+L+ YA+C L + F I D VS+N++++ L FR
Sbjct: 91 ---RPSPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCL--FRRWDH 145
Query: 182 NLLDEMEMIQTDMQPNTISLSGVLAAC----AQVKGVKLGKAIHGYVLRH---HIHLSTA 234
L M+ + +L VL A A V+LG+ H + L++ H H A
Sbjct: 146 ALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFA 205
Query: 235 ----------CGFVICSCSVFNQLSTR--DVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
G V + +F + DVV WN+++S V+SG +A+ L D++
Sbjct: 206 FNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVAL 265
Query: 283 NVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNALIDMYGRCGAIQK 330
V+P+ VT S LPAC +L L G L SFV +AL+DMY + K
Sbjct: 266 GVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGK 325
Query: 331 SRKIFVLMPH--KNLVSWNVMISVY 353
+R++F ++P K L WN MI Y
Sbjct: 326 ARQVFDMVPDSGKQLGMWNAMICGY 350
>gi|357446017|ref|XP_003593286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482334|gb|AES63537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 622
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 104/351 (29%), Positives = 165/351 (47%), Gaps = 60/351 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNL---FYLMIDKGVRPDHFVCPKVYKACSELKD--YRVGKD 86
W SM+ Y G E + + FY + G P + + C D +R+G+
Sbjct: 134 TWNSMINAYLQNGLLVEALQMLKDFYFL---GFLPKPELLASMVSMCGREMDLGWRIGRQ 190
Query: 87 VYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL 146
++ L + GR+ I +F ++ + +DFY +C
Sbjct: 191 IHG-------------------LVVVDGRIRIQHSVF--------LSTAFVDFYFRCGDS 223
Query: 147 KVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
++ F +++ K+ VSW A+++G A + EM++ + PN ++L +LA
Sbjct: 224 LMARSVFDEMEVKNEVSWTAVISGCANNQDYDVALACYREMQV--EGVSPNRVTLIALLA 281
Query: 207 ACAQVKGVKLGKAIHGYVLRHHI----HLSTACGFVICSCS--------VFNQLSTRDVV 254
ACA+ VK GK IHGY R S A ++ C C +F S RDVV
Sbjct: 282 ACARPGFVKYGKEIHGYAFRRGFDSCHSFSPALIYLYCECGQSLHLAERIFEGSSLRDVV 341
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------- 307
+W+SII ++ R G+ AL L + +PN VT+++V+ AC L++ G
Sbjct: 342 LWSSIIGSYARRGESDKALKLFNKMRTEETEPNYVTLLAVISACTNLSSFKHGGVIHGYI 401
Query: 308 ----LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+G FV NALI+MY +CG++ SRKIF+ MP ++ V+WN MIS YG
Sbjct: 402 LKFGIGFSIFVCNALINMYAKCGSLDDSRKIFLEMPSRDSVTWNSMISAYG 452
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 140/314 (44%), Gaps = 38/314 (12%)
Query: 71 VYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR-------MEITSGLF 123
V C+ +DY V Y M + EG + + L+ L C R EI F
Sbjct: 244 VISGCANNQDYDVALACYREM---QVEGVSPNRVTLIALLAACARPGFVKYGKEIHGYAF 300
Query: 124 EE-MDQDFLVNNSLIDFYAKC-RYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVT 181
D + +LI Y +C + L ++ F +D+V W++++ YA G ++
Sbjct: 301 RRGFDSCHSFSPALIYLYCECGQSLHLAERIFEGSSLRDVVLWSSIIGSYARRGESDKAL 360
Query: 182 NLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS--------- 232
L ++M +T +PN ++L V++AC + K G IHGY+L+ I S
Sbjct: 361 KLFNKMRTEET--EPNYVTLLAVISACTNLSSFKHGGVIHGYILKFGIGFSIFVCNALIN 418
Query: 233 --TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
CG + S +F ++ +RD V WNS+ISA+ G AL ++ VK + VT
Sbjct: 419 MYAKCGSLDDSRKIFLEMPSRDSVTWNSMISAYGLHGYGEQALQHFYEMKERGVKLDAVT 478
Query: 291 IVSVLPACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFVLM 338
++VL AC + +G V + LID++GR G ++ + +I M
Sbjct: 479 FLAVLSACNHAGLVTEGQQLFEQVNADCEIPITIEHYACLIDLHGRSGKLEDALEILRTM 538
Query: 339 PHKNLVS-WNVMIS 351
P K W+ ++S
Sbjct: 539 PMKPSARIWSSLVS 552
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 122/254 (48%), Gaps = 30/254 (11%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D +V+NS+I YAK ++ + F + +D ++WN+M+ Y G E +L +
Sbjct: 100 DPIVSNSIISMYAKFFDIESARQVFDTMPHRDTITWNSMINAYLQNGLLVEALQMLKDFY 159
Query: 189 MIQTDMQPNTISLSGVLAACAQVK--GVKLGKAIHGYV-------LRHHIHLSTA----- 234
+ +P L+ +++ C + G ++G+ IHG V ++H + LSTA
Sbjct: 160 FLGFLPKPEL--LASMVSMCGREMDLGWRIGRQIHGLVVVDGRIRIQHSVFLSTAFVDFY 217
Query: 235 --CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
CG + + SVF+++ ++ V W ++IS + AL R++ V V PN VT++
Sbjct: 218 FRCGDSLMARSVFDEMEVKNEVSWTAVISGCANNQDYDVALACYREMQVEGVSPNRVTLI 277
Query: 293 SVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCG-AIQKSRKIFVLMPH 340
++L AC + A +G + ALI +Y CG ++ + +IF
Sbjct: 278 ALLAACARPGFVKYGKEIHGYAFRRGFDSCHSFSPALIYLYCECGQSLHLAERIFEGSSL 337
Query: 341 KNLVSWNVMISVYG 354
+++V W+ +I Y
Sbjct: 338 RDVVLWSSIIGSYA 351
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%)
Query: 279 VIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLM 338
V+ + +K + T L A G T V N++I MY + I+ +R++F M
Sbjct: 68 VLPSVIKACSFTHFHAFGTQLHCLAFITGSYTDPIVSNSIISMYAKFFDIESARQVFDTM 127
Query: 339 PHKNLVSWNVMISVY 353
PH++ ++WN MI+ Y
Sbjct: 128 PHRDTITWNSMINAY 142
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY--- 88
W SM+ Y + GY E+ + FY M ++GV+ D V AC+ G+ ++
Sbjct: 443 TWNSMISAYGLHGYGEQALQHFYEMKERGVKLDAVTFLAVLSACNHAGLVTEGQQLFEQV 502
Query: 89 --DYMISIKFEGNACVKRPLLDLFIKCGRME 117
D I I E AC L+DL + G++E
Sbjct: 503 NADCEIPITIEHYAC----LIDLHGRSGKLE 529
>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
Length = 924
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 112/388 (28%), Positives = 179/388 (46%), Gaps = 57/388 (14%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKG 60
+ LG +H +I G+ L F+G+ L+ GMY G +E + +F M +
Sbjct: 162 VRLGEVIHGMVIKMGLVLDVFVGNALV----------GMYGKCGAVDEAMKVFDFMPETN 211
Query: 61 -VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN-------------ACVKRPL 106
V + +C + +D +D ++ + E C
Sbjct: 212 LVSWNSMICA--------FSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGE 263
Query: 107 LDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNA 166
+D+ + + + GL EE+ +VNN+++ Y+KC YL + F K K++VSWN
Sbjct: 264 VDIGMGIHGLAVKLGLSEEV----MVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNT 319
Query: 167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR 226
M++ ++L G E NLL EM++ +M+ N +++ VL AC ++ K +HGY R
Sbjct: 320 MISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFR 379
Query: 227 H---HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL 276
H H+ LS A CG + + VF+ + + V WN++I ++G AL LL
Sbjct: 380 HCFQHVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLL 439
Query: 277 RDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRC 325
+ + +P+ TI S+L AC L +L GL T FV +L+ Y C
Sbjct: 440 FQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHC 499
Query: 326 GAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G +R +F M KNLVSWN MIS Y
Sbjct: 500 GKASSARVLFDRMKDKNLVSWNAMISGY 527
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 98/351 (27%), Positives = 163/351 (46%), Gaps = 65/351 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKG--VRPDHFVCPKVYKACSELKDYRVGKDVYD 89
+W +M+ +++ G E NL M +G ++ + V AC + R K+++
Sbjct: 316 SWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHG 375
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
Y F Q ++N+ I YAKC L +
Sbjct: 376 YS-------------------------------FRHCFQHVELSNAFILAYAKCGALNSA 404
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F I K + SWNA++ G+A G + +LL +M + QP+ ++S +L ACA
Sbjct: 405 EKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLL--FQMTYSGQQPDWFTISSLLLACA 462
Query: 210 QVKGVKLGKAIHGYVLR---------------HHIHLSTACGFVICSCSVFNQLSTRDVV 254
+K ++ GK IHGYVLR H+IH CG + +F+++ +++V
Sbjct: 463 HLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIH----CGKASSARVLFDRMKDKNLV 518
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV 314
WN++IS + ++G ++L L R + ++ + + IVSV AC +L+AL G +V
Sbjct: 519 SWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYV 578
Query: 315 WNAL-----------IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
AL IDMY + G I++SRK+F + KN+ SWN +I +G
Sbjct: 579 LKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHG 629
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 172/343 (50%), Gaps = 57/343 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFY-LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +++ Y G Y ++V +F L+ D +PD+F P V KAC + D R+G+ ++ +
Sbjct: 113 WNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMV 172
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + +LD+F V N+L+ Y KC + +
Sbjct: 173 IKMGL---------VLDVF---------------------VGNALVGMYGKCGAVDEAMK 202
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + + +LVSWN+M+ ++ GF + +LL EM + + + P+ +++ +L CA
Sbjct: 203 VFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEM-LGEEGLLPDVVTVVTILPVCAGE 261
Query: 212 KGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
V +G IHG ++ +++ + CG++ + F + + ++VV WN++I
Sbjct: 262 GEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMI 321
Query: 261 SAFVRSGQVVDALDLLRDVIV--ANVKPNTVTIVSVLPAC---LKLAALPQGLGTGSF-- 313
SAF G V +A +LL+++ + +K N VTI++VLPAC L+L +L + G SF
Sbjct: 322 SAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGY-SFRH 380
Query: 314 ------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ NA I Y +CGA+ + K+F + K + SWN +I
Sbjct: 381 CFQHVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALI 423
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 130/250 (52%), Gaps = 26/250 (10%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
D+++N LI YA C S F ++ K+L+ WNA+++GY G +V + M
Sbjct: 77 NDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVF--M 134
Query: 188 EMI-QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-----------AC 235
+++ TD QP+ + V+ AC + V+LG+ IHG V++ + L C
Sbjct: 135 DLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKC 194
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSV 294
G V + VF+ + ++V WNS+I AF +G D+ DLL +++ + P+ VT+V++
Sbjct: 195 GAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTI 254
Query: 295 LPACLKLAALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
LP C + G+G V NA++ MY +CG + +++ FV +KN+
Sbjct: 255 LPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNV 314
Query: 344 VSWNVMISVY 353
VSWN MIS +
Sbjct: 315 VSWNTMISAF 324
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 144/336 (42%), Gaps = 61/336 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++G + G + ++L + M G +PD F + AC+ LK + GK+++ Y+
Sbjct: 418 SWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYV 477
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
L ++ DF V SL+ Y C +
Sbjct: 478 ------------------------------LRNGLETDFFVGTSLLSHYIHCGKASSARV 507
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++K K+LVSWNAM++GY+ G E L + + +Q + I++ V AC+Q+
Sbjct: 508 LFDRMKDKNLVSWNAMISGYSQNGLPYESLALF--RKSLSEGIQSHEIAIVSVFGACSQL 565
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSC--------------SVFNQLSTRDVVVWN 257
++LGK HGYVL+ L T FV CS VF+ L ++V WN
Sbjct: 566 SALRLGKEAHGYVLKA---LQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWN 622
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN- 316
+II A G +A++L + P+ T + +L AC + +GL + N
Sbjct: 623 AIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNF 682
Query: 317 -----------ALIDMYGRCGAIQKSRKIFVLMPHK 341
LIDM R G + + ++ MP +
Sbjct: 683 NLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEE 718
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 72/333 (21%), Positives = 134/333 (40%), Gaps = 85/333 (25%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
++ G ++H +++ G+E F+G+ LL + +W +M+
Sbjct: 467 LQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISG 526
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI-SIKFEG 98
Y+ G E + LF + +G++ V+ ACS+L R+GK+ + Y++ +++ E
Sbjct: 527 YSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTE- 585
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
D F+ C S+ID YAK +K S F +K
Sbjct: 586 ---------DAFVGC---------------------SIIDMYAKSGCIKESRKVFDGLKD 615
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV----KGV 214
K++ SWNA++ + + G +E L + M+ + P+ + G+L AC +G+
Sbjct: 616 KNVASWNAIIVAHGIHGHGKEAIELYERMKKV--GQMPDRFTYIGILMACGHAGLVEEGL 673
Query: 215 KLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALD 274
K K + + L AC +I R+G++ DAL
Sbjct: 674 KYFKEMQNFNLIEPKLEHYAC-----------------------LIDMLARAGRLDDALR 710
Query: 275 LLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
L+ ++ + + S+L +C AL G
Sbjct: 711 LVNEM---PEEADNRIWSSLLRSCRTFGALEIG 740
>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
Length = 676
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 108/399 (27%), Positives = 182/399 (45%), Gaps = 79/399 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMY 40
E+G +HA ++ G + AF+ + L+ ++ N W +M+ Y
Sbjct: 140 EMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGY 199
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG-N 99
G +E + +F MI KG+ PD V CS LK+ VG+ V+ ++ +K G +
Sbjct: 200 FKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHA-LVEVKNLGED 258
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V LLD++ KCG M+ +F EMD ++
Sbjct: 259 ISVWNSLLDMYAKCGNMDEAQMIFYEMD------------------------------KR 288
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSW M+ GY L G L M+ ++PN ++L+ VL+ACA + +K G+
Sbjct: 289 DVVSWTTMMNGYILNGDARSALLLCQMMQF--ESVKPNFVTLASVLSACASLYSLKHGRC 346
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+HG+ +R I + C V S VF++ S + WN+IIS + +G
Sbjct: 347 LHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGL 406
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------VWNA 317
A++L + +++ V PN T+ S+LPA L L Q + V
Sbjct: 407 SRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATI 466
Query: 318 LIDMYGRCGAIQKSRKIFVLMPH--KNLVSWNVMISVYG 354
LID+Y +CG+++ + IF +P K++++W+ +I+ YG
Sbjct: 467 LIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYG 505
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 105/393 (26%), Positives = 170/393 (43%), Gaps = 79/393 (20%)
Query: 6 QVHAHLIVCGVEL-------------------CAFLGSQLLEVFCN-----WTSMMGMYN 41
Q+HAH I G+ CA +L + N W +M+ MY
Sbjct: 39 QIHAHTITLGLLSSPYSHHLLSSLAAAYAMCGCAPHARKLFDELRNPSLFSWNAMIRMYT 98
Query: 42 VLGYYEEIVNLFYLMIDKGVR-PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G + + LF M+ G R PD++ P V KAC DY++
Sbjct: 99 NSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACG------------DYLL-------- 138
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
P + I + SG D D V NSL+ Y C ++V+ F ++++
Sbjct: 139 ----PEMGALIHA--RTVMSGF----DSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERT 188
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
LVSWN M+ GY G +E + D M I ++P+ ++ VL C+ +K +++G+ +
Sbjct: 189 LVSWNTMINGYFKNGCVKEALMVFDWM--IGKGIEPDCATVVSVLPVCSYLKELEVGRRV 246
Query: 221 HGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H V ++ + CG + + +F ++ RDVV W ++++ ++ +G
Sbjct: 247 HALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDA 306
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNAL 318
AL L + + +VKPN VT+ SVL AC L +L G L + V AL
Sbjct: 307 RSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETAL 366
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
IDMY +C + S ++F + WN +IS
Sbjct: 367 IDMYAKCNNVNLSFRVFSKXSKQRTAPWNAIIS 399
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/345 (23%), Positives = 153/345 (44%), Gaps = 58/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+MM Y + G + L +M + V+P+ V AC+ L + G+ ++ +
Sbjct: 292 SWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWA 351
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I K E + +V +LID YAKC + +S
Sbjct: 352 IRQKLE------------------------------SEVIVETALIDMYAKCNNVNLSFR 381
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FSK ++ WNA+++G G + L +M M D PN +L+ +L A A +
Sbjct: 382 VFSKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVD--PNDATLNSLLPAYAFL 439
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLST--RDVVVWNS 258
++ + +HGY++R I + + CG + + ++FN + +D++ W++
Sbjct: 440 TDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSA 499
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV---- 314
II+ + G A+ L ++ + VKPN +T S+L AC + +GLG F+
Sbjct: 500 IIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGLGLFKFMLEDN 559
Query: 315 --------WNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMI 350
+ +ID+ GR G ++++ ++ M + N W ++
Sbjct: 560 QMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALL 604
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 121/258 (46%), Gaps = 24/258 (9%)
Query: 118 ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFR 177
IT GL L++ SL YA C + F +++ L SWNAM+ Y G
Sbjct: 45 ITLGLLSSPYSHHLLS-SLAAAYAMCGCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLS 103
Query: 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG-----------YVLR 226
+ L +M + P+ + V+ AC ++G IH +V
Sbjct: 104 YDALGLFVQM-LASGRRWPDNYTYPFVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQN 162
Query: 227 HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286
+ + CG + + VF+ + R +V WN++I+ + ++G V +AL + +I ++P
Sbjct: 163 SLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEP 222
Query: 287 NTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIF 335
+ T+VSVLP C L L G LG VWN+L+DMY +CG + +++ IF
Sbjct: 223 DCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIF 282
Query: 336 VLMPHKNLVSWNVMISVY 353
M +++VSW M++ Y
Sbjct: 283 YEMDKRDVVSWTTMMNGY 300
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 26/182 (14%)
Query: 198 TISLSGVLAACAQVKGVKLGKAIHGYVL---------RHHIHLSTACGFVICSCS----- 243
T +L C K + K IH + + HH+ S A + +C C+
Sbjct: 18 TARYQSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLLSSLAAAYAMCGCAPHARK 77
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK-PNTVTIVSVLPAC---- 298
+F++L + WN++I + SG DAL L ++ + + P+ T V+ AC
Sbjct: 78 LFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYL 137
Query: 299 -------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ + G + +FV N+L+ MY CG ++ +R++F LM + LVSWN MI+
Sbjct: 138 LPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMIN 197
Query: 352 VY 353
Y
Sbjct: 198 GY 199
>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
Length = 702
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 100/350 (28%), Positives = 158/350 (45%), Gaps = 57/350 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M+ + G ++E V Y M+ GVRPD ACS L+ VG++++ Y+
Sbjct: 86 TWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYV 145
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I +E+ + V ++L+D YA + +
Sbjct: 146 IKD-----------------------------DELAANSFVASALVDMYATHEQVGKARQ 176
Query: 152 KFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + K L WNAM+ GYA G EE L ME + P +++ VL ACA
Sbjct: 177 VFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARME-AEAGFVPCETTMASVLPACA 235
Query: 210 QVKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ + +A+HGYV++ + + G + +F + DVV WN+
Sbjct: 236 RSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNT 295
Query: 259 IISAFVRSGQVVDALDLLRDVIV---ANVKPNTVTIVSVLPACLKLAALPQG-------- 307
+I+ V G V DA L R++ V PN +T++++LP C LAA +G
Sbjct: 296 LITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAV 355
Query: 308 ---LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L T V +AL+DMY +CG + SR +F +P +N ++WNV+I YG
Sbjct: 356 RHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYG 405
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/348 (23%), Positives = 141/348 (40%), Gaps = 58/348 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M+ Y G EE + LF M + G P V AC+ + + + V+ Y+
Sbjct: 191 WNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYV 250
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ GN V N+L+D YA+ V+
Sbjct: 251 VKRGMAGNR------------------------------FVQNALMDMYARLGKTDVARR 280
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNTISLSGVLAACAQ 210
F+ + D+VSWN ++ G + G + L EM+ ++ + PN I+L +L CA
Sbjct: 281 IFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAI 340
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACG------FVICSC-----SVFNQLSTRDVVVWNSI 259
+ GK IHGY +RH + A G + C C +VF++L R+ + WN +
Sbjct: 341 LAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVL 400
Query: 260 ISAFVRSGQVVDALDLL-RDVIVANVKPNTVTIVSVLPACLKLAALPQGLG--------- 309
I A+ G +A L R +PN VT ++ L AC + +GL
Sbjct: 401 IMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDH 460
Query: 310 ---TGSFVWNALIDMYGRCGAIQKSRKIFVLMP--HKNLVSWNVMISV 352
+ ++D+ GR G + ++ + M + + +W+ M+
Sbjct: 461 GVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGA 508
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 121/249 (48%), Gaps = 36/249 (14%)
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIK--QKDLVSWNAMLAGYALGG-FREEVTNLLDEMEMI 190
N+L+ YA+ + + F+ + D+V+WN M++ G F E V L D M+
Sbjct: 55 NALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYD---MV 111
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSC-------- 242
++P+ ++ + L AC++++ + +G+ +H YV++ A FV +
Sbjct: 112 ALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKD--DELAANSFVASALVDMYATHE 169
Query: 243 ------SVFNQL--STRDVVVWNSIISAFVRSGQVVDALDLL-RDVIVANVKPNTVTIVS 293
VF+ + S + + +WN++I + ++G +AL L R A P T+ S
Sbjct: 170 QVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMAS 229
Query: 294 VLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
VLPAC + A +G+ FV NAL+DMY R G +R+IF ++ +
Sbjct: 230 VLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPD 289
Query: 343 LVSWNVMIS 351
+VSWN +I+
Sbjct: 290 VVSWNTLIT 298
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 29/174 (16%)
Query: 209 AQVKGVKLGKAIHGYVLRH---HIHLSTA----------CGFVICSCSVFNQLSTR--DV 253
A V+LG+ H + L++ H H A G V + +F + DV
Sbjct: 25 AAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDV 84
Query: 254 VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------ 307
V WN+++S V+SG +A+ L D++ V+P+ VT S LPAC +L L G
Sbjct: 85 VTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAY 144
Query: 308 ------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH--KNLVSWNVMISVY 353
L SFV +AL+DMY + K+R++F ++P K L WN MI Y
Sbjct: 145 VIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGY 198
>gi|224112156|ref|XP_002316102.1| predicted protein [Populus trichocarpa]
gi|222865142|gb|EEF02273.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 106/345 (30%), Positives = 167/345 (48%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W+SM+ Y ++ + LF M ++ + + + AC +L GK ++ Y+
Sbjct: 170 SWSSMIAGYVQNNLAQDGLVLFNRMREELIEANQITLGILVHACKKLGALHQGKWLHGYL 229
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I KCG +E+ S +LV +L+D YAKC ++ +
Sbjct: 230 I-------------------KCG-IELGS---------YLVT-ALLDLYAKCGVVRDARS 259
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ D+VSW AM+ GY G EE L + E Q + PN ++++ V ++C+Q+
Sbjct: 260 VFDELHGIDIVSWTAMIVGYTQNGCPEEALKLFLQKE--QVAVLPNDVTIASVFSSCSQL 317
Query: 212 KGVKLGKAIHGY----------VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ LG++IHG V + C + VF +S RDVV WNSIIS
Sbjct: 318 LNLNLGRSIHGLSIKLGSRDPIVTNSLVDFYAKCQMNRDARYVFETISDRDVVAWNSIIS 377
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LG 309
AF ++G +AL+L + + +V P+ VT+VSVL AC L AL G L
Sbjct: 378 AFSQNGSAYEALELFHQMRMGSVLPDAVTLVSVLSACASLNALQVGSSFHAYAVKRGLLS 437
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ +V AL+ Y +CG + +R IF M K+ V+W+ MIS YG
Sbjct: 438 SNVYVGTALLTFYAKCGDAESARVIFDGMDQKSTVTWSAMISGYG 482
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/387 (23%), Positives = 173/387 (44%), Gaps = 78/387 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G +H +LI CG+EL ++L + LL+++ +WT+M+ Y
Sbjct: 222 GKWLHGYLIKCGIELGSYLVTALLDLYAKCGVVRDARSVFDELHGIDIVSWTAMIVGYTQ 281
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G EE + LF V P+ V+ +CS+L + +G+ ++
Sbjct: 282 NGCPEEALKLFLQKEQVAVLPNDVTIASVFSSCSQLLNLNLGRSIHG------------- 328
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L IK G +D +V NSL+DFYAKC+ + + F I +D+V
Sbjct: 329 ------LSIKLG------------SRDPIVTNSLVDFYAKCQMNRDARYVFETISDRDVV 370
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+WN++++ ++ G E L +M M + P+ ++L VL+ACA + +++G + H
Sbjct: 371 AWNSIISAFSQNGSAYEALELFHQMRM--GSVLPDAVTLVSVLSACASLNALQVGSSFHA 428
Query: 223 Y-----VLRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y +L ++++ TA CG + +F+ + + V W+++IS + G
Sbjct: 429 YAVKRGLLSSNVYVGTALLTFYAKCGDAESARVIFDGMDQKSTVTWSAMISGYGIQGNGR 488
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNAL 318
+L + D++ A +KPN S+L AC + +G + + + +
Sbjct: 489 GSLSIFGDMLKAELKPNEEIFTSILSACSHTGMIGEGWRLFTMICQDYNLVPSTKHYTCM 548
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVS 345
+D+ R G ++++ MP + VS
Sbjct: 549 VDLLARAGRLKEALDFIQKMPVQPDVS 575
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 117/251 (46%), Gaps = 23/251 (9%)
Query: 124 EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNL 183
+ + +D + L+ Y L ++ F I D +SW ++ Y L ++
Sbjct: 31 QGLTRDLSCSTKLVSLYGSFGRLDLARLVFDTIPHPDFLSWKVIIRWYFLNSEFRDIVGF 90
Query: 184 LDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH----------GYVLRHHIHLST 233
+ M + + + + S VL AC++ + G+ +H +V + +
Sbjct: 91 YNRMRVCLKEC--DNVVFSHVLKACSESRNFDEGRKVHCQIVKFGNPDSFVFTGLVDMYA 148
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
CG + CS SVF++ R+V W+S+I+ +V++ D L L + ++ N +T+
Sbjct: 149 KCGEIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRMREELIEANQITLGI 208
Query: 294 VLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
++ AC KL AL Q G+ GS++ AL+D+Y +CG ++ +R +F + +
Sbjct: 209 LVHACKKLGALHQGKWLHGYLIKCGIELGSYLVTALLDLYAKCGVVRDARSVFDELHGID 268
Query: 343 LVSWNVMISVY 353
+VSW MI Y
Sbjct: 269 IVSWTAMIVGY 279
>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Cucumis sativus]
Length = 762
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 105/397 (26%), Positives = 187/397 (47%), Gaps = 75/397 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++LG Q+H + CG+EL + + + LL ++ +W ++
Sbjct: 175 LDLGTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISG 234
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G E +LF MI G++PD +EL + K+++ Y+I +
Sbjct: 235 YVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIR-----H 289
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
A V LD+F+K ++LID Y KCR ++++ +
Sbjct: 290 AVV----LDVFLK---------------------SALIDIYFKCRDVEMAQKILCQSSSF 324
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D V M++GY L G +E ++Q M+P +++ S + A A + + LGK
Sbjct: 325 DTVVCTTMISGYVLNGKNKEALEAF--RWLVQERMKPTSVTFSSIFPAFAGLAALNLGKE 382
Query: 220 IHGYVLRHHI----HLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+HG +++ + H+ +A CG + +C VFN+++ +D + WNS+I++ ++G+
Sbjct: 383 LHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGR 442
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNA 317
+A++L R + + + + V+I L AC L AL G L + + ++
Sbjct: 443 PGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESS 502
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
LIDMY +CG + SR++F M +N VSWN +IS YG
Sbjct: 503 LIDMYAKCGNLNFSRRVFDRMQERNEVSWNSIISAYG 539
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 158/344 (45%), Gaps = 56/344 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYL-MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W M+ + ++G + + LFYL M+ GV PD + P V KAC LK ++GK V++
Sbjct: 26 WNWMIRGFTMMGQFNYAL-LFYLKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHE-- 82
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
++ G + +D V +SLI YA+ +L +
Sbjct: 83 -TVNLMG---------------------------LKEDVFVGSSLIKLYAENGHLSDAQY 114
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F I QKD V WN ML GY G + +EM ++++PN+++ + VL+ CA
Sbjct: 115 LFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIF--LEMRHSEIKPNSVTFACVLSVCASE 172
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACG------FVICSC-----SVFNQLSTRDVVVWNSII 260
+ LG +HG + + L + + C C +F+ D+V WN II
Sbjct: 173 AMLDLGTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGII 232
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLG 309
S +V++G + +A L R +I A +KP+++T S LP +L +L +
Sbjct: 233 SGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVV 292
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
F+ +ALID+Y +C ++ ++KI + V MIS Y
Sbjct: 293 LDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGY 336
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/378 (23%), Positives = 166/378 (43%), Gaps = 76/378 (20%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVF-------------CNW--------TSMMGMYNVLG 44
++H ++I V L FL S L++++ C T+M+ Y + G
Sbjct: 281 EIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNG 340
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
+E + F ++ + ++P ++ A + L +GK+++ +I K
Sbjct: 341 KNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTK--------- 391
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
+D+ V ++++D YAKC L ++ F++I +KD + W
Sbjct: 392 ---------------------LDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICW 430
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG-- 222
N+M+ + G E NL +M M T + + +S+SG L+ACA + + GK IHG
Sbjct: 431 NSMITSCSQNGRPGEAINLFRQMGMEGT--RYDCVSISGALSACANLPALHYGKEIHGLM 488
Query: 223 ---------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
Y I + CG + S VF+++ R+ V WNSIISA+ G + + L
Sbjct: 489 IKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVSWNSIISAYGNHGDLKECL 548
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNALIDM 321
L +++ ++P+ VT + ++ AC + +G+ + + + DM
Sbjct: 549 ALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADM 608
Query: 322 YGRCGAIQKSRKIFVLMP 339
+GR G + ++ + MP
Sbjct: 609 FGRAGRLDEAFETINSMP 626
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 93/394 (23%), Positives = 166/394 (42%), Gaps = 75/394 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+++G VH + + G++ F+GS L++++ W M+
Sbjct: 74 VKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNG 133
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G + +F M ++P+ V C+ +G ++ +S E +
Sbjct: 134 YVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVSCGLELD 193
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ V LL ++ KC ++ LF+ Q
Sbjct: 194 SPVANTLLAMYSKCQCLQAARKLFDTS------------------------------PQS 223
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
DLVSWN +++GY G E +L MI ++P++I+ + L ++ +K K
Sbjct: 224 DLVSWNGIISGYVQNGLMGEAEHLF--RGMISAGIKPDSITFASFLPCVNELLSLKHCKE 281
Query: 220 IHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IHGY++RH + L C V + + Q S+ D VV ++IS +V +G+
Sbjct: 282 IHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGK 341
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNA 317
+AL+ R ++ +KP +VT S+ PA LAAL G L V +A
Sbjct: 342 NKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSA 401
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
++DMY +CG + + ++F + K+ + WN MI+
Sbjct: 402 ILDMYAKCGRLDLACRVFNRITEKDAICWNSMIT 435
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 115/236 (48%), Gaps = 24/236 (10%)
Query: 140 YAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI 199
Y + LK + F ++ +WN M+ G+ + G + LL ++M+ + P+
Sbjct: 2 YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMG--QFNYALLFYLKMLGAGVSPDKY 59
Query: 200 SLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQL 248
+ V+ AC +K VK+GK +H +V I L G + + +F+ +
Sbjct: 60 TFPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA------ 302
+D V+WN +++ +V++G +A+ + ++ + +KPN+VT VL C A
Sbjct: 120 PQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGT 179
Query: 303 -----ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
A+ GL S V N L+ MY +C +Q +RK+F P +LVSWN +IS Y
Sbjct: 180 QLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGY 235
>gi|255583011|ref|XP_002532274.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528034|gb|EEF30114.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 631
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 100/375 (26%), Positives = 171/375 (45%), Gaps = 75/375 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G Q+H H++ G+E+ + L++ + +WT+M+ Y
Sbjct: 161 GKQIHGHVLRRGIEIDVSFVNVLIDFYTKSGKVQSARKLFDGMADRNVISWTAMIAGYMQ 220
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+ E V LF M G RPD FVC + +C L+ +G+ V+ Y I +GN
Sbjct: 221 NSFDREAVKLFIEMTRLGRRPDGFVCTSILTSCGSLEALELGRQVHAYSI----KGN--- 273
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
++ D + N LID YAKC L + F + +++V
Sbjct: 274 -----------------------VESDIFLQNGLIDMYAKCGSLNDARKVFDDMTIRNVV 310
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
S+NA++ GY+ E NL EM + P+ ++ +L A A + ++LGK IH
Sbjct: 311 SYNALIEGYSTLEQLSEAMNLFREMR--HGMLSPSFLTFVSLLGASATLSALELGKQIHA 368
Query: 223 YVLRHHIHLSTACGFVI------CSCS-----VFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+ + I + G + CSC VF++++ +D+VVWN+++ + + + +
Sbjct: 369 LITKFGISMEIFAGSALIDFYSKCSCLMDARLVFDKMTEKDIVVWNAMLFGYTQQLENEE 428
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALID 320
AL L ++ ++ KPN VT ++ A LA+L GL + F N+LID
Sbjct: 429 ALKLYTELQISEPKPNVVTFAALTTAASNLASLQHGQQFHNHIIKTGLDSHPFTTNSLID 488
Query: 321 MYGRCGAIQKSRKIF 335
MY +CG+++ +RK F
Sbjct: 489 MYAKCGSLEDARKAF 503
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/391 (23%), Positives = 178/391 (45%), Gaps = 75/391 (19%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNVLG 44
Q+H + G + ++G+ L++++ WT+++ G
Sbjct: 62 QMHGFAVKSGFDRNVYVGTSLVDLYAKGGNIDEARLVFDGLLEKSAVTWTTIITACVKRG 121
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
E + LF M + V PD ++ V ACS+L+ + GK ++ +++ +R
Sbjct: 122 RSEVSLQLFSQMRETNVVPDGYILSSVLGACSQLEFVQGGKQIHGHVL----------RR 171
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
+ E+D F+ N LIDFY K ++ + F + ++++SW
Sbjct: 172 GI------------------EIDVSFV--NVLIDFYTKSGKVQSARKLFDGMADRNVISW 211
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
AM+AGY F E L +EM + +P+ + +L +C ++ ++LG+ +H Y
Sbjct: 212 TAMIAGYMQNSFDREAVKLF--IEMTRLGRRPDGFVCTSILTSCGSLEALELGRQVHAYS 269
Query: 225 LRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
++ + I + CG + + VF+ ++ R+VV +N++I + Q+ +A+
Sbjct: 270 IKGNVESDIFLQNGLIDMYAKCGSLNDARKVFDDMTIRNVVSYNALIEGYSTLEQLSEAM 329
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALIDMY 322
+L R++ + P+ +T VS+L A L+AL G+ F +ALID Y
Sbjct: 330 NLFREMRHGMLSPSFLTFVSLLGASATLSALELGKQIHALITKFGISMEIFAGSALIDFY 389
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+C + +R +F M K++V WN M+ Y
Sbjct: 390 SKCSCLMDARLVFDKMTEKDIVVWNAMLFGY 420
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 116/221 (52%), Gaps = 26/221 (11%)
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
+ +++L+SW+++++ Y+ GF EE + + + + PN L+ V++AC QV G
Sbjct: 1 MPERNLISWSSVVSMYSKRGFSEEALLVFLDFKRC-CNENPNEYILASVISACVQVGG-S 58
Query: 216 LGKAIHGYVLR----HHIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNSIISAFV 264
+ K +HG+ ++ ++++ T+ G + + VF+ L + V W +II+A V
Sbjct: 59 IDKQMHGFAVKSGFDRNVYVGTSLVDLYAKGGNIDEARLVFDGLLEKSAVTWTTIITACV 118
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTG-----S 312
+ G+ +L L + NV P+ + SVL AC +L + G L G S
Sbjct: 119 KRGRSEVSLQLFSQMRETNVVPDGYILSSVLGACSQLEFVQGGKQIHGHVLRRGIEIDVS 178
Query: 313 FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
FV N LID Y + G +Q +RK+F M +N++SW MI+ Y
Sbjct: 179 FV-NVLIDFYTKSGKVQSARKLFDGMADRNVISWTAMIAGY 218
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/375 (21%), Positives = 148/375 (39%), Gaps = 90/375 (24%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ELG QVHA+ I VE FL + L++++ ++ +++
Sbjct: 259 LELGRQVHAYSIKGNVESDIFLQNGLIDMYAKCGSLNDARKVFDDMTIRNVVSYNALIEG 318
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y+ L E +NLF M + P + A + L +GK ++
Sbjct: 319 YSTLEQLSEAMNLFREMRHGMLSPSFLTFVSLLGASATLSALELGKQIH----------- 367
Query: 100 ACVKRPLLDLFIKCG-RMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
L K G MEI +G ++LIDFY+KC L + F K+ +
Sbjct: 368 --------ALITKFGISMEIFAG------------SALIDFYSKCSCLMDARLVFDKMTE 407
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
KD+V WNAML GY EE L E+++ ++ +PN ++ + + A + + ++ G+
Sbjct: 408 KDIVVWNAMLFGYTQQLENEEALKLYTELQI--SEPKPNVVTFAALTTAASNLASLQHGQ 465
Query: 219 AIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRD 278
H ++++ + NS+I + + G + DA
Sbjct: 466 QFHNHIIKTGLD--------------------SHPFTTNSLIDMYAKCGSLEDARKAFGH 505
Query: 279 VIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLM 338
V + + +P K + P G+ + ++ + GR G + ++++ M
Sbjct: 506 V------KDGLHYFESMP---KFSIKP-----GTEHYACVVSLLGRSGKLYEAKEFIEKM 551
Query: 339 P-HKNLVSWNVMISV 352
P V W ++S
Sbjct: 552 PTEPEAVVWRSLLSA 566
>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
Length = 784
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 109/395 (27%), Positives = 186/395 (47%), Gaps = 90/395 (22%)
Query: 3 LGIQVHAHLIVCGVEL----CAFLGSQLLEV-----------------FCNWTSMMGMYN 41
+G +VH LI G +L C FL L++ +W SM+ Y
Sbjct: 142 VGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSGYQ 201
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+ G + F M+ G + D F ACS R G +++ +I
Sbjct: 202 IDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIR-------- 253
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
E++ D +V SLID Y KC + + F++I K++
Sbjct: 254 ----------------------SELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNI 291
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
V+WNAM+ GG +E+ + P+ I++ +L +C+Q + GK+IH
Sbjct: 292 VAWNAMI-----GGMQED------------DKVIPDVITMINLLPSCSQSGALLEGKSIH 334
Query: 222 GYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
G+ +R ++ L TA CG + + VFNQ++ +++V WN++++A+V++ Q
Sbjct: 335 GFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYK 394
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALI 319
+AL + + ++ +KP+ +TI SVLPA +LA+ + GLG+ +F+ NA++
Sbjct: 395 EALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIV 454
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
MY +CG +Q +R+ F M K++VSWN MI Y
Sbjct: 455 YMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYA 489
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/371 (26%), Positives = 174/371 (46%), Gaps = 81/371 (21%)
Query: 17 ELCAFLGSQL----LEVFCN--------WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPD 64
+LC F+ S L L++F W ++ Y G ++E ++ +Y M +G+R D
Sbjct: 64 DLCGFVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSD 123
Query: 65 HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFE 124
+F P V KAC EL VG+ V+ +I I F
Sbjct: 124 NFTFPFVIKACGELLALMVGQKVHGKLIKIGF---------------------------- 155
Query: 125 EMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLL 184
D D V N LID Y K +++++ F ++ +DLVSWN+M++GY + G + +++L+
Sbjct: 156 --DLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSGYQIDG--DGLSSLM 211
Query: 185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST----------- 233
EM++ + + + L AC+ ++ G IH V+R + L
Sbjct: 212 CFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYG 271
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
CG V + VFN++ ++++V WN++I +V+ P+ +T+++
Sbjct: 272 KCGKVDYAERVFNRIYSKNIVAWNAMIGGMQEDDKVI---------------PDVITMIN 316
Query: 294 VLPACLKLAALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
+LP+C + AL +G F + AL+DMYG+CG ++ + +F M KN
Sbjct: 317 LLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKN 376
Query: 343 LVSWNVMISVY 353
+VSWN M++ Y
Sbjct: 377 MVSWNTMVAAY 387
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 32/178 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y Y+E + +F ++++ ++PD V A +EL GK ++ Y+
Sbjct: 379 SWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYI 438
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + N + ++ ++ KCG ++ F+ M C
Sbjct: 439 MKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGM---------------VC-------- 475
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
KD+VSWN M+ YA+ GF EM +PN + +L AC+
Sbjct: 476 -------KDVVSWNTMIMAYAIHGFGRTSIQFFSEMR--GKGFKPNGSTFVSLLTACS 524
>gi|242053565|ref|XP_002455928.1| hypothetical protein SORBIDRAFT_03g027395 [Sorghum bicolor]
gi|241927903|gb|EES01048.1| hypothetical protein SORBIDRAFT_03g027395 [Sorghum bicolor]
Length = 537
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 109/400 (27%), Positives = 176/400 (44%), Gaps = 79/400 (19%)
Query: 1 MELGIQVHAHLIVCGVELC--AFLGSQLLEVFCN-----------------------WTS 35
+ G QVHA L+ G C A++G++L + W +
Sbjct: 85 LRAGRQVHAALVKRGPYYCRNAYVGTKLTVFYARCGALDDAERALGALPERHRNAFAWAA 144
Query: 36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIK 95
++G+++ G + + F M++ GV D+FV P V KAC+ L G+ V+ Y
Sbjct: 145 VIGLWSRAGLHARALAGFVAMLEAGVPADNFVAPTVLKACAGLGLSGAGRAVHGYAW--- 201
Query: 96 FEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSK 155
K G E V +SL+DFY KC ++ + F
Sbjct: 202 ----------------KAGVAECV-----------YVMSSLVDFYGKCGEVEDARAVFDA 234
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
+ ++ +V+WN ML Y G +E L EM + + P +S+ L+A A ++ +
Sbjct: 235 MPERTVVTWNTMLMAYIHNGRIDEAVELFYEMRV--EGVLPTRVSILSFLSASADLEAID 292
Query: 216 LGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
G+ H + + + G V + +VF Q+ RD V WN +I+ +
Sbjct: 293 GGRQGHAVAVSSGLEMDVILGSSMINFYCKVGLVEAAEAVFEQMKERDAVTWNLMIAGYF 352
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSF 313
+ GQ+ A D R ++ AN+K + VT+ S++ ACLK A+ GL +
Sbjct: 353 QDGQIDKAFDTCRRMLEANLKFDCVTLASIIMACLKSCIMLVGIAAHGYAVRNGLHSDKT 412
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V + LIDMY G I+ +R++F M +NLV W VMIS Y
Sbjct: 413 VASGLIDMYASAGRIEHARRVFNAMCPRNLVIWKVMISAY 452
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 88/386 (22%), Positives = 166/386 (43%), Gaps = 94/386 (24%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNV 42
G VH + GV C ++ S L++ + W +M+ Y
Sbjct: 193 GRAVHGYAWKAGVAECVYVMSSLVDFYGKCGEVEDARAVFDAMPERTVVTWNTMLMAYIH 252
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G +E V LFY M +GV P A ++L+ G+ +G+A
Sbjct: 253 NGRIDEAVELFYEMRVEGVLPTRVSILSFLSASADLEAIDGGR-----------QGHA-- 299
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+ ++SGL + D ++ +S+I+FY K ++ + F ++K++D V
Sbjct: 300 -------------VAVSSGL----EMDVILGSSMINFYCKVGLVEAAEAVFEQMKERDAV 342
Query: 163 SWNAMLAGYALGGFREEVTNLLDE-MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
+WN M+AGY G ++ D M++ +++ + ++L+ ++ AC + + +G A H
Sbjct: 343 TWNLMIAGYFQDG---QIDKAFDTCRRMLEANLKFDCVTLASIIMACLKSCIMLVGIAAH 399
Query: 222 GYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
GY +R+ +H + + G + + VFN + R++V+W +ISA+V G
Sbjct: 400 GYAVRNGLHSDKTVASGLIDMYASAGRIEHARRVFNAMCPRNLVIWKVMISAYVDCGINS 459
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQK 330
+A +LL + + + P+ AC W+ +I + R G +
Sbjct: 460 EARNLLNQMQLEGISPSA--------AC----------------WDLVISAFIRNGQFED 495
Query: 331 SRKIFVLM----PHKNLVSWNVMISV 352
+ IF M NL +W+++IS
Sbjct: 496 ALDIFSEMLLTKTRPNLRTWSLLISA 521
>gi|124359403|gb|ABN05862.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 460
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 143/276 (51%), Gaps = 33/276 (11%)
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ R + L + GR+ I +F ++ + +DFY +C ++ F +++ K+
Sbjct: 187 IGRQIHGLVVVDGRIRIQHSVF--------LSTAFVDFYFRCGDSLMARSVFDEMEVKNE 238
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSW A+++G A + EM++ + PN ++L +LAACA+ VK GK IH
Sbjct: 239 VSWTAVISGCANNQDYDVALACYREMQV--EGVSPNRVTLIALLAACARPGFVKYGKEIH 296
Query: 222 GYVLRHHI----HLSTACGFVICSCS--------VFNQLSTRDVVVWNSIISAFVRSGQV 269
GY R S A ++ C C +F S RDVV+W+SII ++ R G+
Sbjct: 297 GYAFRRGFDSCHSFSPALIYLYCECGQSLHLAERIFEGSSLRDVVLWSSIIGSYARRGES 356
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNAL 318
AL L + +PN VT+++V+ AC L++ G +G FV NAL
Sbjct: 357 DKALKLFNKMRTEETEPNYVTLLAVISACTNLSSFKHGGVIHGYILKFGIGFSIFVCNAL 416
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
I+MY +CG++ SRKIF+ MP ++ V+WN MIS YG
Sbjct: 417 INMYAKCGSLDDSRKIFLEMPSRDSVTWNSMISAYG 452
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 122/254 (48%), Gaps = 30/254 (11%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D +V+NS+I YAK ++ + F + +D ++WN+M+ Y G E +L +
Sbjct: 100 DPIVSNSIISMYAKFFDIESARQVFDTMPHRDTITWNSMINAYLQNGLLVEALQMLKDFY 159
Query: 189 MIQTDMQPNTISLSGVLAACAQVK--GVKLGKAIHGYV-------LRHHIHLSTA----- 234
+ +P L+ +++ C + G ++G+ IHG V ++H + LSTA
Sbjct: 160 FLGFLPKPEL--LASMVSMCGREMDLGWRIGRQIHGLVVVDGRIRIQHSVFLSTAFVDFY 217
Query: 235 --CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
CG + + SVF+++ ++ V W ++IS + AL R++ V V PN VT++
Sbjct: 218 FRCGDSLMARSVFDEMEVKNEVSWTAVISGCANNQDYDVALACYREMQVEGVSPNRVTLI 277
Query: 293 SVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCG-AIQKSRKIFVLMPH 340
++L AC + A +G + ALI +Y CG ++ + +IF
Sbjct: 278 ALLAACARPGFVKYGKEIHGYAFRRGFDSCHSFSPALIYLYCECGQSLHLAERIFEGSSL 337
Query: 341 KNLVSWNVMISVYG 354
+++V W+ +I Y
Sbjct: 338 RDVVLWSSIIGSYA 351
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 31/160 (19%)
Query: 21 FLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD 80
F GS L +V W+S++G Y G ++ + LF M + P++ V AC+ L
Sbjct: 332 FEGSSLRDVVL-WSSIIGSYARRGESDKALKLFNKMRTEETEPNYVTLLAVISACTNLSS 390
Query: 81 YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFY 140
++ G ++ Y++ + I +F V N+LI+ Y
Sbjct: 391 FKHGGVIHGYIL----------------------KFGIGFSIF--------VCNALINMY 420
Query: 141 AKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEV 180
AKC L S F ++ +D V+WN+M++ Y L G+ E+
Sbjct: 421 AKCGSLDDSRKIFLEMPSRDSVTWNSMISAYGLHGYGEQA 460
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%)
Query: 279 VIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLM 338
V+ + +K + T L A G T V N++I MY + I+ +R++F M
Sbjct: 68 VLPSVIKACSFTHFHAFGTQLHCLAFITGSYTDPIVSNSIISMYAKFFDIESARQVFDTM 127
Query: 339 PHKNLVSWNVMISVY 353
PH++ ++WN MI+ Y
Sbjct: 128 PHRDTITWNSMINAY 142
>gi|224088075|ref|XP_002308315.1| predicted protein [Populus trichocarpa]
gi|222854291|gb|EEE91838.1| predicted protein [Populus trichocarpa]
Length = 545
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/345 (27%), Positives = 167/345 (48%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++G+ +G+Y E + MID G+ D+FV P + KAC+ L+ G+ V+ Y+
Sbjct: 80 SWAAIIGLNCRMGFYREALMGLCEMIDTGILADNFVVPNILKACAALQWISFGRGVHGYV 139
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + F+ V L+D + KCG +E +F+ M
Sbjct: 140 VKMGFDRCVFVSSSLVDAYGKCGILEDARKVFDNM------------------------- 174
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
K++V+WN+M+ Y GF E + EM + D++PN ++L L+A A +
Sbjct: 175 -----SDKNVVTWNSMIGSYVQNGFDVEAARVFSEMRL--EDVEPNQVTLLSFLSASANL 227
Query: 212 KGVKLGKAIH------GYVLR-----HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
V+ GK H GY L ++ + G + + VF + +D V WN +I
Sbjct: 228 GAVEEGKQAHAIAVLGGYELDSILGGSILNFYSKVGLIKDAELVFGMMLEKDAVAWNLLI 287
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
S++V+ GQV ALDL + + N++ ++VT+ S+L AC + + G L
Sbjct: 288 SSYVQYGQVEKALDLCHLMRLENMRFDSVTLASILSACSIMGNIELGKEGHCYCIRNYLV 347
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ V N++IDMY +C I +R +F +K+L+ WN +++ Y
Sbjct: 348 SDLAVANSMIDMYAKCEKIADARHVFNSTMNKDLLLWNTLLTAYA 392
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 134/244 (54%), Gaps = 24/244 (9%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
+ L FYAKC +V++ FS++ K++ SW A++ GF E L+ EMI
Sbjct: 49 LETKLFIFYAKCHLFEVANNFFSRLSVKNVFSWAAIIGLNCRMGFYREA--LMGLCEMID 106
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----IHLSTA-------CGFVIC 240
T + + + +L ACA ++ + G+ +HGYV++ + +S++ CG +
Sbjct: 107 TGILADNFVVPNILKACAALQWISFGRGVHGYVVKMGFDRCVFVSSSLVDAYGKCGILED 166
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ VF+ +S ++VV WNS+I ++V++G V+A + ++ + +V+PN VT++S L A
Sbjct: 167 ARKVFDNMSDKNVVTWNSMIGSYVQNGFDVEAARVFSEMRLEDVEPNQVTLLSFLSASAN 226
Query: 301 LAALPQG--------LG---TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L A+ +G LG S + ++++ Y + G I+ + +F +M K+ V+WN++
Sbjct: 227 LGAVEEGKQAHAIAVLGGYELDSILGGSILNFYSKVGLIKDAELVFGMMLEKDAVAWNLL 286
Query: 350 ISVY 353
IS Y
Sbjct: 287 ISSY 290
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 80/386 (20%), Positives = 159/386 (41%), Gaps = 92/386 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
+ G VH +++ G + C F+ S L++ + W SM+G
Sbjct: 129 ISFGRGVHGYVVKMGFDRCVFVSSSLVDAYGKCGILEDARKVFDNMSDKNVVTWNSMIGS 188
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G+ E +F M + V P+ A + L GK + + +E
Sbjct: 189 YVQNGFDVEAARVFSEMRLEDVEPNQVTLLSFLSASANLGAVEEGKQAHAIAVLGGYE-- 246
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D ++ S+++FY+K +K + F + +K
Sbjct: 247 ----------------------------LDSILGGSILNFYSKVGLIKDAELVFGMMLEK 278
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D V+WN +++ Y G E+ +L M + +M+ ++++L+ +L+AC+ + ++LGK
Sbjct: 279 DAVAWNLLISSYVQYGQVEKALDLCHLMRL--ENMRFDSVTLASILSACSIMGNIELGKE 336
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
H Y +R++ I + C + + VFN +D+++WN++++A+ G
Sbjct: 337 GHCYCIRNYLVSDLAVANSMIDMYAKCEKIADARHVFNSTMNKDLLLWNTLLTAYAELGV 396
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAI 328
+ L L + + +V PN ++ WNA+I + R G I
Sbjct: 397 TGEVLKLFYGMQLESVPPNVMS------------------------WNAVILGFIRNGQI 432
Query: 329 QKSRKIFVLMP----HKNLVSWNVMI 350
+++ +F M H NL+++ +I
Sbjct: 433 NEAQDMFSHMQAVGIHPNLMTFTTLI 458
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/368 (21%), Positives = 147/368 (39%), Gaps = 84/368 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+E G Q HA ++ G EL + LG +L + W ++
Sbjct: 230 VEEGKQAHAIAVLGGYELDSILGGSILNFYSKVGLIKDAELVFGMMLEKDAVAWNLLISS 289
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G E+ ++L +LM + +R D + ACS + + +GK+ + Y
Sbjct: 290 YVQYGQVEKALDLCHLMRLENMRFDSVTLASILSACSIMGNIELGKEGHCY--------- 340
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
C++ L+ D V NS+ID YAKC + + F+ K
Sbjct: 341 -CIRNYLV--------------------SDLAVANSMIDMYAKCEKIADARHVFNSTMNK 379
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
DL+ WN +L YA G EV L M++ + PN +S + V+ + + +
Sbjct: 380 DLLLWNTLLTAYAELGVTGEVLKLFYGMQL--ESVPPNVMSWNAVILGFIRNGQINEAQD 437
Query: 220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
+ ++ IH +++ + ++I V++G +A+ + + +
Sbjct: 438 MFSHMQAVGIH--------------------PNLMTFTTLICGLVQNGFGNEAILVFQKM 477
Query: 280 IVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------VWNALIDMYGRCGAI 328
++ N I+S + AC +A+L G + V AL +MY +CG +
Sbjct: 478 QECGIRANLPIIISTISACTDVASLQYGRAIHGYILRHDLLSPIPVATALAEMYSKCGNM 537
Query: 329 QKSRKIFV 336
+++++ V
Sbjct: 538 DQAKRVLV 545
>gi|297823227|ref|XP_002879496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325335|gb|EFH55755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 617
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/339 (27%), Positives = 163/339 (48%), Gaps = 54/339 (15%)
Query: 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
G+ N+ +E ++L+ M G++PD+F V+ AC + ++ VG+ V+ + + E
Sbjct: 102 GLTNIWNDHEGALSLYRRMKYSGLKPDNFTYNFVFIACGKREEIGVGRSVHSSLFKVGLE 161
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
+D +++SLI YAKC + + F +I
Sbjct: 162 ------------------------------RDDHISHSLIMMYAKCGLVGYARKVFDEIT 191
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+ VSWN+M++GY+ G ++ +L +ME + +P+ +L +L ACA + + G
Sbjct: 192 DRVTVSWNSMISGYSEAGRAKDAMDLFRKME--EEGFEPDERTLVSMLGACAHLGDLTTG 249
Query: 218 KAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
+ + + I LST CG + + VFNQ+ +D V WN++I+ + ++
Sbjct: 250 RLLEKMAITKKIGLSTFLGSKLITMYGKCGDLDSARRVFNQMIKKDRVAWNAMITVYSQN 309
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVW 315
G+ +A L ++ V P+ T+ +VL AC + AL G L +V
Sbjct: 310 GKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKRIETHASEISLQHNIYVA 369
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L+DMYG+CG I+++ ++F MP KN +WN MI+ Y
Sbjct: 370 TGLVDMYGKCGHIEEALRVFEAMPVKNEATWNAMITAYA 408
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/334 (27%), Positives = 151/334 (45%), Gaps = 52/334 (15%)
Query: 29 VFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY 88
V +W SM+ Y+ G ++ ++LF M ++G PD + AC+ L D G+
Sbjct: 194 VTVSWNSMISGYSEAGRAKDAMDLFRKMEEEGFEPDERTLVSMLGACAHLGDLTTGR--- 250
Query: 89 DYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKV 148
E A K+ L F+ + LI Y KC L
Sbjct: 251 ------LLEKMAITKKIGLSTFL---------------------GSKLITMYGKCGDLDS 283
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
+ F+++ +KD V+WNAM+ Y+ G E L EME +T + P+ +LS VL+AC
Sbjct: 284 ARRVFNQMIKKDRVAWNAMITVYSQNGKSSEAFKLFFEME--KTGVSPDAGTLSTVLSAC 341
Query: 209 AQVKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWN 257
V ++LGK I + L+H+I+++T CG + + VF + ++ WN
Sbjct: 342 GSVGALELGKRIETHASEISLQHNIYVATGLVDMYGKCGHIEEALRVFEAMPVKNEATWN 401
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA 317
++I+A+ G +AL LL D + V P+ VT + VL AC+ + QG ++
Sbjct: 402 AMITAYAHQGHAKEAL-LLFDQM--PVPPSDVTFIGVLSACVHAGLVDQGCR----YFHE 454
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLV--SWNVM 349
+ ++G I+ I L+ L+ +W M
Sbjct: 455 MSSLFGLVPKIEHYTNIIDLLSRAGLLDEAWEFM 488
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 119/315 (37%), Gaps = 88/315 (27%)
Query: 12 IVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNVLGYYEEIV 50
I + L FLGS+L+ ++ W +M+ +Y+ G E
Sbjct: 257 ITKKIGLSTFLGSKLITMYGKCGDLDSARRVFNQMIKKDRVAWNAMITVYSQNGKSSEAF 316
Query: 51 NLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLF 110
LF+ M GV PD V AC + +GK + + I + N V L+D++
Sbjct: 317 KLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKRIETHASEISLQHNIYVATGLVDMY 376
Query: 111 IKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAG 170
KCG +E +FE M K+ +WNAM+
Sbjct: 377 GKCGHIEEALRVFEAM------------------------------PVKNEATWNAMITA 406
Query: 171 YALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH 230
YA G +E L D+M + P+ ++ GVL+AC +H
Sbjct: 407 YAHQGHAKEALLLFDQM-----PVPPSDVTFIGVLSAC-----------VH--------- 441
Query: 231 LSTACGFVICSCSVFNQLST-----RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK 285
G V C F+++S+ + + +II R+G + +A + + K
Sbjct: 442 ----AGLVDQGCRYFHEMSSLFGLVPKIEHYTNIIDLLSRAGLLDEAWEFMERF---PGK 494
Query: 286 PNTVTIVSVLPACLK 300
P+ + + ++L AC K
Sbjct: 495 PDEIMLAAILGACHK 509
>gi|255553021|ref|XP_002517553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543185|gb|EEF44717.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 653
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/341 (27%), Positives = 172/341 (50%), Gaps = 54/341 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W ++G Y G+++E + L++ M+ G++PD + P V ++C D+ GK+++ ++
Sbjct: 170 SWNVLVGGYAKAGFFDEALCLYHRMLWVGIKPDIYTFPCVLRSCGGANDFIRGKEIHCHV 229
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I FE + L+ +++KCG C + +
Sbjct: 230 IRFGFETDVSAVNALITMYVKCG----------------------------C--VGSART 259
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K+ Q+D +SWNAM++GY G E NL ++M++ + P+ ++++ V++AC +
Sbjct: 260 VFDKMLQRDRISWNAMISGYFENGECVEGLNLF--LQMLELSVDPDLMTMTSVISACELL 317
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+LG+ IHGYV+R I + + G+ + VF++ RDVV W ++I
Sbjct: 318 GDDRLGREIHGYVVRTGYGNDVSVHSLLIQMYASLGYWKEAEKVFSETECRDVVSWTAMI 377
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LGTG 311
S + + AL+ +++ +A + P+ +TI VL AC L L G +G
Sbjct: 378 SGYEGNLMHDKALETYKNMELAGIVPDEITIACVLSACASLGQLDLGMRLHELANRMGLM 437
Query: 312 SF--VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
SF V N+LIDMY +C I K+ ++F + KN++SW +I
Sbjct: 438 SFVIVANSLIDMYSKCKCIDKALEVFHCIQDKNVISWTSII 478
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 103/394 (26%), Positives = 174/394 (44%), Gaps = 77/394 (19%)
Query: 4 GIQVHAHLIVCGVEL--------------CAFLGSQ-------LLEVFCNWTSMMGMYNV 42
G ++H H+I G E C +GS L +W +M+ Y
Sbjct: 222 GKEIHCHVIRFGFETDVSAVNALITMYVKCGCVGSARTVFDKMLQRDRISWNAMISGYFE 281
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G E +NLF M++ V PD V AC L D R+G++++ Y++ + GN
Sbjct: 282 NGECVEGLNLFLQMLELSVDPDLMTMTSVISACELLGDDRLGREIHGYVVRTGY-GN--- 337
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
D V++ LI YA Y K + FS+ + +D+V
Sbjct: 338 --------------------------DVSVHSLLIQMYASLGYWKEAEKVFSETECRDVV 371
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW AM++GY ++ ME+ + P+ I+++ VL+ACA + + LG +H
Sbjct: 372 SWTAMISGYEGNLMHDKALETYKNMEL--AGIVPDEITIACVLSACASLGQLDLGMRLHE 429
Query: 223 YVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
R I + + C + + VF+ + ++V+ W SII + + +
Sbjct: 430 LANRMGLMSFVIVANSLIDMYSKCKCIDKALEVFHCIQDKNVISWTSIILGLRINNRSFE 489
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-------PQGLGTG----SFVWNALID 320
AL R + N+KPN++T++SVL AC ++ AL L T F+ NA++D
Sbjct: 490 ALSFFRK-MKRNLKPNSITLISVLSACARIGALMCGKEIHAHALKTAMVYEGFLPNAILD 548
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
MY RCG + + F L +++ +WN+++ Y
Sbjct: 549 MYVRCGKLGLALNQFNLYK-EDVAAWNILMRGYA 581
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 119/244 (48%), Gaps = 24/244 (9%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
+ N+L+ Y + L + F ++ +++L SWN ++ GYA GF +E L M +
Sbjct: 139 LGNALLSMYVRFSDLNNAWNVFGRMGERNLFSWNVLVGGYAKAGFFDEALCLYHRM--LW 196
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVIC 240
++P+ + VL +C GK IH +V+R I + CG V
Sbjct: 197 VGIKPDIYTFPCVLRSCGGANDFIRGKEIHCHVIRFGFETDVSAVNALITMYVKCGCVGS 256
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ +VF+++ RD + WN++IS + +G+ V+ L+L ++ +V P+ +T+ SV+ AC
Sbjct: 257 ARTVFDKMLQRDRISWNAMISGYFENGECVEGLNLFLQMLELSVDPDLMTMTSVISACEL 316
Query: 301 LA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L + G G V + LI MY G +++ K+F +++VSW M
Sbjct: 317 LGDDRLGREIHGYVVRTGYGNDVSVHSLLIQMYASLGYWKEAEKVFSETECRDVVSWTAM 376
Query: 350 ISVY 353
IS Y
Sbjct: 377 ISGY 380
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 130/284 (45%), Gaps = 53/284 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ Y +++ + + M G+ PD V AC+ L +G +++
Sbjct: 372 SWTAMISGYEGNLMHDKALETYKNMELAGIVPDEITIACVLSACASLGQLDLGMRLHEL- 430
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCR----YLK 147
RM + S + +V NSLID Y+KC+ L+
Sbjct: 431 ---------------------ANRMGLMSFV--------IVANSLIDMYSKCKCIDKALE 461
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
V HC I+ K+++SW +++ G + E + +M + +++PN+I+L VL+A
Sbjct: 462 VFHC----IQDKNVISWTSIILGLRINNRSFEALSFFRKM---KRNLKPNSITLISVLSA 514
Query: 208 CAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVW 256
CA++ + GK IH + L+ + + CG + + + FN L DV W
Sbjct: 515 CARIGALMCGKEIHAHALKTAMVYEGFLPNAILDMYVRCGKLGLALNQFN-LYKEDVAAW 573
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
N ++ + GQ A++L +I + V P+ VT +++L AC +
Sbjct: 574 NILMRGYAEQGQGAMAVELFHKMIESKVNPDDVTYIALLCACSR 617
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 33/187 (17%), Positives = 77/187 (41%), Gaps = 34/187 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTS++ + E ++ F M + ++P+ V AC+ + GK+++ +
Sbjct: 473 SWTSIILGLRINNRSFEALSFFRKM-KRNLKPNSITLISVLSACARIGALMCGKEIHAHA 531
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + +LD++++CG++ + F
Sbjct: 532 LKTAMVYEGFLPNAILDMYVRCGKLGLALNQF---------------------------- 563
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+ ++D+ +WN ++ GYA G L +MI++ + P+ ++ +L AC++
Sbjct: 564 ---NLYKEDVAAWNILMRGYAEQGQGAMAVELFH--KMIESKVNPDDVTYIALLCACSRS 618
Query: 212 KGVKLGK 218
V+ K
Sbjct: 619 GMVEEAK 625
>gi|302803540|ref|XP_002983523.1| hypothetical protein SELMODRAFT_118230 [Selaginella moellendorffii]
gi|300148766|gb|EFJ15424.1| hypothetical protein SELMODRAFT_118230 [Selaginella moellendorffii]
Length = 506
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 121/238 (50%), Gaps = 22/238 (9%)
Query: 139 FYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT 198
+AKC LK S F + KD++ WN+M+ Y+ G E L M ++PN
Sbjct: 1 MFAKCGSLKESREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNA 60
Query: 199 ISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQ 247
I+ + VLAAC+ V+ ++ GK +H ++ A CG + + VF+
Sbjct: 61 ITYTTVLAACSAVEALEQGKEVHRQMVDAGFQFDAAAENSLVNMYAKCGSITEAREVFDG 120
Query: 248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
+ R VV W IISA+VR G +ALDL R + V+PN +T SVL AC L AL +G
Sbjct: 121 MKQRTVVSWTGIISAYVRKGHPREALDLYRKMGSEGVEPNGITFASVLSACSSLGALEEG 180
Query: 308 LGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ V NAL+ +YG+CG++ +RK+F M +N+VSW MIS Y
Sbjct: 181 KAVHAQMKAAGYKPDLAVANALVSLYGKCGSVDSARKVFDRMKIRNVVSWTAMISSYA 238
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/347 (28%), Positives = 162/347 (46%), Gaps = 61/347 (17%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKG--VRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
W SM+ Y+ G+ E + LF M V P+ V ACS ++ GK+V+
Sbjct: 26 WNSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNAITYTTVLAACSAVEALEQGKEVHRQ 85
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
M+ F+ +A + NSL++ YAKC + +
Sbjct: 86 MVDAGFQFDAAAE------------------------------NSLVNMYAKCGSITEAR 115
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F +KQ+ +VSW +++ Y G E +L +M ++PN I+ + VL+AC+
Sbjct: 116 EVFDGMKQRTVVSWTGIISAYVRKGHPREALDLYRKMG--SEGVEPNGITFASVLSACSS 173
Query: 211 VKGVKLGKAIH------GY-----VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ ++ GKA+H GY V + L CG V + VF+++ R+VV W ++
Sbjct: 174 LGALEEGKAVHAQMKAAGYKPDLAVANALVSLYGKCGSVDSARKVFDRMKIRNVVSWTAM 233
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL-------------KLAALPQ 306
IS++ +A+ L + + +V PN VT+ SVL AC KLA+
Sbjct: 234 ISSYAHHRHSEEAIQLYKAM---DVAPNAVTLASVLSACASLGNAEEGRAVHEKLASTTT 290
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
GL T + NAL++MY +CG +RKIF M ++ +SW+ +I+ Y
Sbjct: 291 GLATDEVLQNALLNMYAKCGDGDAARKIFDAMAVRDTMSWSTLIAAY 337
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/393 (23%), Positives = 167/393 (42%), Gaps = 82/393 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLL-------------EVF--------CNWTSMMGM 39
+E G +VH ++ G + A + L+ EVF +WT ++
Sbjct: 76 LEQGKEVHRQMVDAGFQFDAAAENSLVNMYAKCGSITEAREVFDGMKQRTVVSWTGIISA 135
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G+ E ++L+ M +GV P+ V ACS L GK V+ M + +
Sbjct: 136 YVRKGHPREALDLYRKMGSEGVEPNGITFASVLSACSSLGALEEGKAVHAQMKAAGY--- 192
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+P D V N+L+ Y KC + + F ++K +
Sbjct: 193 ----KP-----------------------DLAVANALVSLYGKCGSVDSARKVFDRMKIR 225
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
++VSW AM++ YA EE L M D+ PN ++L+ VL+ACA + + G+A
Sbjct: 226 NVVSWTAMISSYAHHRHSEEAIQLYKAM-----DVAPNAVTLASVLSACASLGNAEEGRA 280
Query: 220 IHGYVLRHHIHLST-------------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
+H + L+T CG + +F+ ++ RD + W+++I+A+ +
Sbjct: 281 VHEKLASTTTGLATDEVLQNALLNMYAKCGDGDAARKIFDAMAVRDTMSWSTLIAAYTQH 340
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----GLGTGSFVWNALIDM 321
G+ +A+++ R + + V+ ++ +VL AC + L G T A ++
Sbjct: 341 GRGGEAVEMCRSMELEGVQASSFIYGTVLTACSQAGLLESARHYFGCLTRDCGAPAKLED 400
Query: 322 Y-------GRCGAIQKSRKIFVLMP-HKNLVSW 346
Y GR G + ++ ++ +MP V+W
Sbjct: 401 YVCMATVLGRAGRLAEAEELLAVMPFEAEFVAW 433
>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 850
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/363 (28%), Positives = 180/363 (49%), Gaps = 42/363 (11%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-GVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W S++ Y LG + + +F M ++ G RPD+ V C+ L + +GK ++ +
Sbjct: 195 SWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCF 254
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVS 149
++ + N V L+D++ KCG M+ + +F M +D + N+++ Y++ + +
Sbjct: 255 AVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDA 314
Query: 150 HCKFSKIKQK----DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
F K++++ D+V+W+A ++GYA G E + +M+ + ++PN ++L VL
Sbjct: 315 VRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVC--RQMLSSGIKPNEVTLISVL 372
Query: 206 AACAQVKGVKLGKAIHGYVLRHHIHLS------------------TACGFVICSCSVFNQ 247
+ CA V + GK IH Y +++ I L C V + ++F+
Sbjct: 373 SGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDS 432
Query: 248 LST--RDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN--VKPNTVTIVSVLPACLKLAA 303
LS RDVV W +I + + G AL+LL ++ + +PN TI L AC LAA
Sbjct: 433 LSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAA 492
Query: 304 LPQGLGTGS------------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
L G + FV N LIDMY +CG+I +R +F M KN V+W +++
Sbjct: 493 LRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMT 552
Query: 352 VYG 354
YG
Sbjct: 553 GYG 555
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/388 (24%), Positives = 159/388 (40%), Gaps = 97/388 (25%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ Y G + + LF LM PD++ P V+KAC E+ R G+ +
Sbjct: 94 HWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALS 153
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F N V N+L+ Y++CR L +
Sbjct: 154 LVTGFISNV------------------------------FVGNALVAMYSRCRSLSDARK 183
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ D+VSWN+++ YA G + + M + +P+ I+L VL CA +
Sbjct: 184 VFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTN-EFGCRPDNITLVNVLPPCASL 242
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
LGK +H + + + + CG + + +VF+ +S +DVV WN+++
Sbjct: 243 GTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMV 302
Query: 261 SAFVRSGQVVDALDLL-----------------------------------RDVIVANVK 285
+ + + G+ DA+ L R ++ + +K
Sbjct: 303 AGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIK 362
Query: 286 PNTVTIVSVLPACLKLAAL------------------PQGLGTGSFVWNALIDMYGRCGA 327
PN VT++SVL C + AL G G + V N LIDMY +C
Sbjct: 363 PNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKK 422
Query: 328 IQKSRKIF-VLMP-HKNLVSWNVMISVY 353
+ +R +F L P +++V+W VMI Y
Sbjct: 423 VDTARAMFDSLSPKERDVVTWTVMIGGY 450
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 147/334 (44%), Gaps = 49/334 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W++ + Y G E + + M+ G++P+ V C+ + GK+++ Y
Sbjct: 332 TWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYA 391
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I K P+ DL K G + + +V N LID YAKC+ + +
Sbjct: 392 I----------KYPI-DLR-KNGHGD-----------ENMVINQLIDMYAKCKKVDTARA 428
Query: 152 KFSKI--KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + K++D+V+W M+ GY+ G + LL EM +PN ++S L ACA
Sbjct: 429 MFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACA 488
Query: 210 QVKGVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWN 257
+ +++GK IH Y LR+ I + CG + + VF+ + ++ V W
Sbjct: 489 SLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWT 548
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL--------- 308
S+++ + G +AL + ++ K + VT++ VL AC + QG+
Sbjct: 549 SLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTV 608
Query: 309 ---GTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
G + L+D+ GR G + + ++ MP
Sbjct: 609 FGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMP 642
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 13/141 (9%)
Query: 227 HHIHLSTACGFVICSCSVFNQLSTRDVVV--WNSIISAFVRSGQVVDALDLLRDVIVANV 284
H I + G + + S+ + D V WNS+I ++ +G L L + +
Sbjct: 64 HLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSW 123
Query: 285 KPNTVTIVSVLPACLKLAA-----------LPQGLGTGSFVWNALIDMYGRCGAIQKSRK 333
P+ T V AC ++++ L G + FV NAL+ MY RC ++ +RK
Sbjct: 124 TPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARK 183
Query: 334 IFVLMPHKNLVSWNVMISVYG 354
+F M ++VSWN +I Y
Sbjct: 184 VFDEMSVWDVVSWNSIIESYA 204
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 26/195 (13%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WTS+M Y + GY EE + +F M G + D V ACS G + ++ M
Sbjct: 546 TWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRM 605
Query: 92 -----ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCR-Y 145
+S E AC L+DL + GR+ L EEM + + F + CR +
Sbjct: 606 KTVFGVSPGPEHYAC----LVDLLGRAGRLNAALRLIEEMPME-PPPVVWVAFLSCCRIH 660
Query: 146 LKVSHCKFSKIKQKDLV-----SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTIS 200
KV +++ K +L S+ + YA G ++VT + M +P
Sbjct: 661 GKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRP---- 716
Query: 201 LSGVLAACAQVKGVK 215
C+ V+G+K
Sbjct: 717 ------GCSWVEGIK 725
>gi|225450622|ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09190
[Vitis vinifera]
Length = 485
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 102/347 (29%), Positives = 178/347 (51%), Gaps = 28/347 (8%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
+ SM+ Y++ G E + LF M ++G+ PD F + K+CS + D R+GK V+ +I
Sbjct: 75 FNSMIKGYSLCGPSENSLLLFSQMKNRGIWPDEFTFAPLLKSCSGICDNRIGKGVHGVVI 134
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHC 151
+ FE + ++ ++DL+ CGRME +F+EM D+D +V N +I + K +++
Sbjct: 135 VVGFERFSSIRIGIIDLYTSCGRMEDAKKVFDEMLDRDVIVWNMMIRGFCKVGDIEMGFR 194
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +++ + +VSWN+M+AG G E L EM +P+ ++ +L CA++
Sbjct: 195 LFRQMRDRSVVSWNSMIAGLEQSGRDGEALELF--REMWDHGFEPDDATVVTILPVCARL 252
Query: 212 KGVKLGKAIHGY-----VLRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
V +G+ IH Y +LR I + + CG + + VFN++ ++VV WN++
Sbjct: 253 GAVDVGEWIHSYAESSRLLRDFISVGNSLVDFYCKCGILETAWRVFNEMPQKNVVSWNAM 312
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG--LGTGSFV--- 314
IS +G+ DL ++I V+PN T V VL C + +G L T V
Sbjct: 313 ISGLTFNGKGELGADLFEEMINKGVRPNDATFVGVLSCCAHAGLVERGRNLFTSMTVDHK 372
Query: 315 -------WNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISVY 353
+ ++D+ R G ++++R + MP + N V W ++S Y
Sbjct: 373 MEPKLEHFGCMVDLLARNGCMEEARDLVRTMPMRPNAVLWGSLLSAY 419
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 123/253 (48%), Gaps = 56/253 (22%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + + +L+ +N+M+ GY+L G E L +M+ + P+ + + +L +C+ +
Sbjct: 64 FHQTQNPNLLLFNSMIKGYSLCGPSENSLLLFSQMK--NRGIWPDEFTFAPLLKSCSGIC 121
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVV------ 255
++GK +HG V+ I L T+CG + + VF+++ RDV+V
Sbjct: 122 DNRIGKGVHGVVIVVGFERFSSIRIGIIDLYTSCGRMEDAKKVFDEMLDRDVIVWNMMIR 181
Query: 256 -------------------------WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
WNS+I+ +SG+ +AL+L R++ +P+ T
Sbjct: 182 GFCKVGDIEMGFRLFRQMRDRSVVSWNSMIAGLEQSGRDGEALELFREMWDHGFEPDDAT 241
Query: 291 IVSVLPACLKLAALPQGLGTGSF------------VWNALIDMYGRCGAIQKSRKIFVLM 338
+V++LP C +L A+ G S+ V N+L+D Y +CG ++ + ++F M
Sbjct: 242 VVTILPVCARLGAVDVGEWIHSYAESSRLLRDFISVGNSLVDFYCKCGILETAWRVFNEM 301
Query: 339 PHKNLVSWNVMIS 351
P KN+VSWN MIS
Sbjct: 302 PQKNVVSWNAMIS 314
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 113/262 (43%), Gaps = 44/262 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ G E + LF M D G PD + C+ L VG+ ++ Y
Sbjct: 206 SWNSMIAGLEQSGRDGEALELFREMWDHGFEPDDATVVTILPVCARLGAVDVGEWIHSYA 265
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
S + LL FI G NSL+DFY KC L+ +
Sbjct: 266 ESSR----------LLRDFISVG-------------------NSLVDFYCKCGILETAWR 296
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+++ QK++VSWNAM++G G E +L +EM I ++PN + GVL+ CA
Sbjct: 297 VFNEMPQKNVVSWNAMISGLTFNGKGELGADLFEEM--INKGVRPNDATFVGVLSCCAHA 354
Query: 212 KGVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTR-DVVVWNS 258
V+ G+ + + H + L G + + + + R + V+W S
Sbjct: 355 GLVERGRNLFTSMTVDHKMEPKLEHFGCMVDLLARNGCMEEARDLVRTMPMRPNAVLWGS 414
Query: 259 IISAFVRSGQVVDALDLLRDVI 280
++SA+ G V A ++++I
Sbjct: 415 LLSAYRTIGDVKHAECAVKELI 436
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 22/156 (14%)
Query: 220 IHGYVLRHHIHLSTAC-GFVICSCS----------VFNQLSTRDVVVWNSIISAFVRSGQ 268
IH ++LRHH+H S I C VF+Q +++++NS+I + G
Sbjct: 28 IHAHILRHHLHQSNQILSHFISVCGALDKMGYANLVFHQTQNPNLLLFNSMIKGYSLCGP 87
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKL-----------AALPQGLGTGSFVWNA 317
++L L + + P+ T +L +C + + G S +
Sbjct: 88 SENSLLLFSQMKNRGIWPDEFTFAPLLKSCSGICDNRIGKGVHGVVIVVGFERFSSIRIG 147
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ID+Y CG ++ ++K+F M ++++ WN+MI +
Sbjct: 148 IIDLYTSCGRMEDAKKVFDEMLDRDVIVWNMMIRGF 183
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 15/175 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY--- 88
+W +M+ G E +LF MI+KGVRP+ V C+ G++++
Sbjct: 308 SWNAMISGLTFNGKGELGADLFEEMINKGVRPNDATFVGVLSCCAHAGLVERGRNLFTSM 367
Query: 89 --DYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD--QDFLVNNSLIDFYAKCR 144
D+ + K E C ++DL + G ME L M + ++ SL+ Y
Sbjct: 368 TVDHKMEPKLEHFGC----MVDLLARNGCMEEARDLVRTMPMRPNAVLWGSLLSAYRTIG 423
Query: 145 YLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI 199
+K + C ++ + L WN+ Y L DE+E ++ M+ I
Sbjct: 424 DVKHAECAVKELIE--LEPWNS--GNYVLLSNVYAEDGKWDEVEKVRALMKEKNI 474
>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 705
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/405 (23%), Positives = 186/405 (45%), Gaps = 55/405 (13%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ +G+Q+H + L ++GS L++++ +W S++
Sbjct: 167 LSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITC 226
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY-DYMISIKFEG 98
Y G + + +F M++ G+ PD V AC+ L R G ++ M K+
Sbjct: 227 YEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRN 286
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
+ + L+D++ KC R+ +F+ M +D + S++ YAK +K + FS +
Sbjct: 287 DLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMM 346
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
++++VSWNA++AGY G EE L + + + + P + +L ACA + +KLG
Sbjct: 347 ERNVVSWNALIAGYTQNGENEEAVRLF--LLLKRESIWPTHYTFGNLLNACANLADLKLG 404
Query: 218 KAIHGYVLRHH-----------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ H ++L+H I + CG V VF ++ RD V WN++I
Sbjct: 405 RQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMI 464
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC------------LKLAALPQGL 308
+ ++G +AL++ R+++V+ +P+ VT++ VL AC + + GL
Sbjct: 465 VGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGL 524
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ ++D+ GR G + ++ + MP + V W +++
Sbjct: 525 VPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAA 569
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 149/309 (48%), Gaps = 26/309 (8%)
Query: 70 KVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQD 129
K+ C + K + V+ +I +F ++ L+D++ KCG +E +F+ M Q
Sbjct: 24 KLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQR 83
Query: 130 FLVN-NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
+ N+++ K L + F + ++D SWNAM++G+A EE + ++
Sbjct: 84 NTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFV--VD 141
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS-----------TACGF 237
M D N S L+ACA + + +G IHG + + L + C
Sbjct: 142 MHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRV 201
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
V + F+ + R++V WNS+I+ + ++G AL++ ++ ++P+ +T+ SV A
Sbjct: 202 VASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASA 261
Query: 298 CLKLAALPQGLGTGSFVW------------NALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
C L+A+ +GL + V NAL+DMY +C + ++R +F MP +++VS
Sbjct: 262 CASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVS 321
Query: 346 WNVMISVYG 354
M+S Y
Sbjct: 322 ETSMVSGYA 330
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 84/384 (21%), Positives = 156/384 (40%), Gaps = 92/384 (23%)
Query: 31 CNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
C+W +M+ + +EE + M + + + AC+ L D +G
Sbjct: 117 CSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIG------ 170
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
++ G R LD+++ ++L+D Y+KCR + +
Sbjct: 171 ---VQIHGLIAKSRYSLDVYM---------------------GSALVDMYSKCRVVASAQ 206
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + +++VSWN+++ Y G + + + M+ ++P+ I+L+ V +ACA
Sbjct: 207 RAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVF--VRMMNCGIEPDEITLASVASACAS 264
Query: 211 VKGVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVV--- 255
+ ++ G IH V++H + + C V + VF+++ RDVV
Sbjct: 265 LSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETS 324
Query: 256 ----------------------------WNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
WN++I+ + ++G+ +A+ L + ++ P
Sbjct: 325 MVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPT 384
Query: 288 TVTIVSVLPACLKLAALP-----------------QGLGTGSFVWNALIDMYGRCGAIQK 330
T ++L AC LA L G + FV N+LIDMY +CG ++
Sbjct: 385 HYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVED 444
Query: 331 SRKIFVLMPHKNLVSWNVMISVYG 354
R +F M ++ VSWN MI Y
Sbjct: 445 GRLVFERMLERDNVSWNAMIVGYA 468
>gi|255575883|ref|XP_002528839.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531751|gb|EEF33573.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 393
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 107/367 (29%), Positives = 166/367 (45%), Gaps = 70/367 (19%)
Query: 56 MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR 115
M G PDH V P V K+C+ L D+++G+ V+ +I + + + L++++ K
Sbjct: 1 MRASGKHPDHNVFPSVIKSCTLLLDFKLGESVHGCIIRLGVDVDLYTGNALMNMYAKFQS 60
Query: 116 ME-------ITSGLFEEMDQDFLVNNSLIDF---------------------------YA 141
++ IT L +EM + L +F Y
Sbjct: 61 LDLCSSERIITHKLLDEMPDRICYDELLHEFEKGIMGMHQNVSLHPDRKVSPQISVNGYI 120
Query: 142 KCRYLKVSH--CK----------FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
+ K SH C+ F + ++DLVSWN ++AG A G EE ++ EM
Sbjct: 121 TDQSYKASHNICRTSDVDSVRKVFEMMPKRDLVSWNTVIAGNAHNGMHEEALVMVREMGN 180
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFV 238
+ +++P++ +LS VL A+ V GK IHGY +RH I + C V
Sbjct: 181 V--NLKPDSFTLSSVLPIFAEYVNVDKGKEIHGYAIRHGLDGDVFIGSSLIDMYAKCTRV 238
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
S VF+ L RD + WNSII+ V++ + L R ++ ANVKP V+ S+LPAC
Sbjct: 239 EDSLRVFSLLPRRDDISWNSIIAGCVQNSLFDEGLRFFRQMLKANVKPRQVSFSSILPAC 298
Query: 299 LKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
L L G F+ ++L+DMY +CG ++ +R IF M ++VSW
Sbjct: 299 AHLTTLNLGRQLHGYILRVRFDNNVFIASSLVDMYAKCGNVKVARWIFDKMKQHDMVSWT 358
Query: 348 VMISVYG 354
MI Y
Sbjct: 359 AMIMGYA 365
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 120/272 (44%), Gaps = 43/272 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ G +EE + + M + ++PD F V +E + GK+++ Y
Sbjct: 154 SWNTVIAGNAHNGMHEEALVMVREMGNVNLKPDSFTLSSVLPIFAEYVNVDKGKEIHGYA 213
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I +G D + +SLID YAKC ++ S
Sbjct: 214 IRHGLDG------------------------------DVFIGSSLIDMYAKCTRVEDSLR 243
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS + ++D +SWN+++AG +E +M++ +++P +S S +L ACA +
Sbjct: 244 VFSLLPRRDDISWNSIIAGCVQNSLFDEGLRFF--RQMLKANVKPRQVSFSSILPACAHL 301
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ LG+ +HGY+LR + + CG V + +F+++ D+V W ++I
Sbjct: 302 TTLNLGRQLHGYILRVRFDNNVFIASSLVDMYAKCGNVKVARWIFDKMKQHDMVSWTAMI 361
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
+ G DA+ L + + +K + V
Sbjct: 362 MGYALHGHARDAISLFEQMEMRGMKLGNILTV 393
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 91/207 (43%), Gaps = 51/207 (24%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G ++H + I G++ F+GS L++++ +W S++
Sbjct: 206 GKEIHGYAIRHGLDGDVFIGSSLIDMYAKCTRVEDSLRVFSLLPRRDDISWNSIIAGCVQ 265
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
++E + F M+ V+P + AC+ L +G+ ++ Y++ ++F+ N
Sbjct: 266 NSLFDEGLRFFRQMLKANVKPRQVSFSSILPACAHLTTLNLGRQLHGYILRVRFDNNV-- 323
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+ +SL+D YAKC +KV+ F K+KQ D+V
Sbjct: 324 ----------------------------FIASSLVDMYAKCGNVKVARWIFDKMKQHDMV 355
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEM 189
SW AM+ GYAL G + +L ++MEM
Sbjct: 356 SWTAMIMGYALHGHARDAISLFEQMEM 382
>gi|15217514|ref|NP_177305.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169720|sp|Q9C9I6.1|PP116_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g71490
gi|12323739|gb|AAG51835.1|AC016163_24 unknown protein; 40702-42747 [Arabidopsis thaliana]
gi|56381899|gb|AAV85668.1| At1g71490 [Arabidopsis thaliana]
gi|56790238|gb|AAW30036.1| At1g71490 [Arabidopsis thaliana]
gi|332197086|gb|AEE35207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 681
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/400 (25%), Positives = 183/400 (45%), Gaps = 51/400 (12%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G+QVHAH I GVE + L +L+ + W ++ Y
Sbjct: 62 GVQVHAHCISSGVEYHSVLVPKLVTFYSAFNLHNEAQSIIENSDILHPLPWNVLIASYAK 121
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+EE++ + M+ KG+RPD F P V KAC E D G+ V+ + ++ + V
Sbjct: 122 NELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVVHGSIEVSSYKSSLYV 181
Query: 103 KRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKI----K 157
L+ ++ + M I LF+ M ++D + N++I+ YA + F K+
Sbjct: 182 CNALISMYKRFRNMGIARRLFDRMFERDAVSWNAVINCYASEGMWSEAFELFDKMWFSGV 241
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+ +++WN + G G L+ M T + P + + L AC+ + ++LG
Sbjct: 242 EVSVITWNIISGGCLQTGNYVGALGLISRMRNFPTSLDPVAMIIG--LKACSLIGAIRLG 299
Query: 218 KAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
K IHG + I + + C + + VF Q + WNSIIS + +
Sbjct: 300 KEIHGLAIHSSYDGIDNVRNTLITMYSKCKDLRHALIVFRQTEENSLCTWNSIISGYAQL 359
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFV 314
+ +A LLR+++VA +PN++T+ S+LP C ++A L G + +
Sbjct: 360 NKSEEASHLLREMLVAGFQPNSITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTML 419
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
WN+L+D+Y + G I ++++ LM ++ V++ +I YG
Sbjct: 420 WNSLVDVYAKSGKIVAAKQVSDLMSKRDEVTYTSLIDGYG 459
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 148/305 (48%), Gaps = 57/305 (18%)
Query: 73 KACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLV 132
KACS + R+GK+++ I ++G +D V
Sbjct: 288 KACSLIGAIRLGKEIHGLAIHSSYDG---------------------------IDN---V 317
Query: 133 NNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQT 192
N+LI Y+KC+ L+ + F + ++ L +WN++++GYA EE ++LL EM+
Sbjct: 318 RNTLITMYSKCKDLRHALIVFRQTEENSLCTWNSIISGYAQLNKSEEASHLL--REMLVA 375
Query: 193 DMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH------------IHLSTACGFVIC 240
QPN+I+L+ +L CA++ ++ GK H Y+LR + + G ++
Sbjct: 376 GFQPNSITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTMLWNSLVDVYAKSGKIVA 435
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ V + +S RD V + S+I + G+ AL L +++ + +KP+ VT+V+VL AC
Sbjct: 436 AKQVSDLMSKRDEVTYTSLIDGYGNQGEGGVALALFKEMTRSGIKPDHVTVVAVLSACSH 495
Query: 301 LAALPQG----------LGTGSFV--WNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWN 347
+ +G G + ++ ++D+YGR G + K++ I MP+K + +W
Sbjct: 496 SKLVHEGERLFMKMQCEYGIRPCLQHFSCMVDLYGRAGFLAKAKDIIHNMPYKPSGATWA 555
Query: 348 VMISV 352
+++
Sbjct: 556 TLLNA 560
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 78/177 (44%), Gaps = 22/177 (12%)
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYVLRHHIHL-STACGFVICSCSVFNQLSTRDVVV--- 255
S + +L+AC V+ G +H + + + S ++ S FN + ++
Sbjct: 45 SAASLLSACVDVRAFLAGVQVHAHCISSGVEYHSVLVPKLVTFYSAFNLHNEAQSIIENS 104
Query: 256 -------WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG- 307
WN +I+++ ++ + + + ++ ++P+ T SVL AC + + G
Sbjct: 105 DILHPLPWNVLIASYAKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGR 164
Query: 308 ----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ +V NALI MY R + +R++F M ++ VSWN +I+ Y
Sbjct: 165 VVHGSIEVSSYKSSLYVCNALISMYKRFRNMGIARRLFDRMFERDAVSWNAVINCYA 221
>gi|255565124|ref|XP_002523554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537116|gb|EEF38749.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 611
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 107/432 (24%), Positives = 194/432 (44%), Gaps = 79/432 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+ G Q+H + V G F+ ++L++++ + WT++ G
Sbjct: 11 LHAGKQIHQQITVSGWGKDPFMLTKLIQMYADCDHLFSAQRLFDKMPQPNVYAWTAIFGF 70
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G Y++ V + M V PD++V PKV +AC++L + G ++ +I E N
Sbjct: 71 YLRHGMYDKCVQNYGFMKYSDVLPDNYVFPKVLRACTQLLWFEGGIWIHKDVIVCGCESN 130
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQ------------------------------- 128
V L+D+++KCG +FEEM++
Sbjct: 131 LQVCNSLIDMYVKCGNARSARLVFEEMEERDLFSWNSMISGYVSNGLADLAVELLNCMRL 190
Query: 129 -----DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNL 183
D + N+L+D Y + + +I+Q +++SW +++ Y+ G + +
Sbjct: 191 DGFEPDVVTWNTLMDAYCQMGRFDEAWEVLKQIEQPNIISWTTLISSYSKIGEHDMSLRV 250
Query: 184 LDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR---HHIHLSTA------ 234
+M +I+ + P+ L VL +C + ++ GK IHGY + + + S+A
Sbjct: 251 FQDM-IIREVVSPDLDCLCSVLVSCRHIGALRSGKEIHGYGTKMETNTVFYSSAGAALLT 309
Query: 235 ----CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
CG + + +VF + D+V WN++I FV A++ R++ ++K + T
Sbjct: 310 MYAKCGRIQDAINVFELMDKSDIVTWNAMILGFVELDLGKQAIECFREMQRMDIKNDQTT 369
Query: 291 IVSVLPACLKLAALPQ--------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
I ++LP C P L + VWNA+I MY +CG ++ + IF MP+K+
Sbjct: 370 ISTILPVCDLQYGNPIHAYVRKSITLSSVVTVWNAVIHMYCKCGCVRSAYTIFCSMPNKD 429
Query: 343 LVSWNVMISVYG 354
+VSWN MI +G
Sbjct: 430 VVSWNTMIGGFG 441
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 132/294 (44%), Gaps = 55/294 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGV-RPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+WT+++ Y+ +G ++ + +F MI + V PD V +C + R GK+++ Y
Sbjct: 230 SWTTLISSYSKIGEHDMSLRVFQDMIIREVVSPDLDCLCSVLVSCRHIGALRSGKEIHGY 289
Query: 91 MISIKFEGN----ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL 146
K E N + LL ++ KCGR++ +FE MD+
Sbjct: 290 --GTKMETNTVFYSSAGAALLTMYAKCGRIQDAINVFELMDK------------------ 329
Query: 147 KVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
D+V+WNAM+ G+ ++ EM+ + D++ + ++S +L
Sbjct: 330 ------------SDIVTWNAMILGFVELDLGKQAIECFREMQ--RMDIKNDQTTISTILP 375
Query: 207 ACAQVKGVKLGKAIHGYVLRH------------HIHLSTACGFVICSCSVFNQLSTRDVV 254
C ++ G IH YV + IH+ CG V + ++F + +DVV
Sbjct: 376 VC----DLQYGNPIHAYVRKSITLSSVVTVWNAVIHMYCKCGCVRSAYTIFCSMPNKDVV 431
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
WN++I F G AL LL+++I++ + PN+ T SVL AC + +G
Sbjct: 432 SWNTMIGGFGMHGHGQAALKLLKEMILSGIFPNSTTFTSVLSACSHSGLVDEGF 485
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 22/172 (12%)
Query: 204 VLAACAQVKGVKLGKAIH-----------GYVLRHHIHLSTACGFVICSCSVFNQLSTRD 252
+L C+ +K + GK IH ++L I + C + + +F+++ +
Sbjct: 1 MLQLCSNLKSLHAGKQIHQQITVSGWGKDPFMLTKLIQMYADCDHLFSAQRLFDKMPQPN 60
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL---- 308
V W +I ++R G + + ++V P+ VL AC +L G+
Sbjct: 61 VYAWTAIFGFYLRHGMYDKCVQNYGFMKYSDVLPDNYVFPKVLRACTQLLWFEGGIWIHK 120
Query: 309 -------GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ V N+LIDMY +CG + +R +F M ++L SWN MIS Y
Sbjct: 121 DVIVCGCESNLQVCNSLIDMYVKCGNARSARLVFEEMEERDLFSWNSMISGY 172
>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
Length = 710
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 157/309 (50%), Gaps = 26/309 (8%)
Query: 70 KVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQ 128
K+ C +L+ R + V+ +I F ++ L+D++ KCG ++ +F+ M ++
Sbjct: 29 KLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMSER 88
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
+ NS+I + ++ S FS + +KD SWN+M+AG+A EE + +
Sbjct: 89 NVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWF--VR 146
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS-----------TACGF 237
M + D N S L+AC+++K +KLG IHG + + L + CG
Sbjct: 147 MHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGL 206
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
V C+ VF+ + ++VV WN +I+ + ++G ++AL+ + KP+ VT+ SV+ A
Sbjct: 207 VGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSA 266
Query: 298 CLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
C LAA +G+ + V NAL+DMY +CG + ++R +F MP +N VS
Sbjct: 267 CATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVS 326
Query: 346 WNVMISVYG 354
M+S Y
Sbjct: 327 ETTMVSGYA 335
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/405 (23%), Positives = 186/405 (45%), Gaps = 55/405 (13%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++LG Q+H + L F+GS L++ + +W ++
Sbjct: 172 LKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITC 231
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI-SIKFEG 98
Y G E + F M + G +PD V AC+ L ++ G ++ ++ S KF
Sbjct: 232 YEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRN 291
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
+ + L+D++ KCGR+ +F+ M ++ + +++ YAK +K + F+ IK
Sbjct: 292 DLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIK 351
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
QKD+VSWNA++AGY G EE L ++ + + P + +L A A + ++LG
Sbjct: 352 QKDIVSWNALIAGYTQNGENEEALGLFRMLK--RESVCPTHYTFGNLLNASANLADLELG 409
Query: 218 KAIHGYVLRHHIHLSTA-----------------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ H +V++H + CG V VF + +D V WN++I
Sbjct: 410 RQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMI 469
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GL 308
+ ++G ++AL+L + ++ + KP+ VT++ L AC + + GL
Sbjct: 470 IGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGL 529
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
+ ++D+ GR G +++++ + MP + + V W+ ++S
Sbjct: 530 LPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSA 574
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 94/384 (24%), Positives = 159/384 (41%), Gaps = 92/384 (23%)
Query: 31 CNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
C+W SM+ + +EE ++ F M + + ACS LKD ++G ++
Sbjct: 122 CSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGL 181
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ K+ LD+F+ G LIDFY+KC + +
Sbjct: 182 ISKSKYS---------LDVFMGSG---------------------LIDFYSKCGLVGCAR 211
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F +++K++VSWN ++ Y G E M + +P+ ++L+ V++ACA
Sbjct: 212 RVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFG--RMTELGFKPDEVTLASVVSACAT 269
Query: 211 VKGVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTR------- 251
+ K G IH V++ + + CG V + VF+++ R
Sbjct: 270 LAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETT 329
Query: 252 ------------------------DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
D+V WN++I+ + ++G+ +AL L R + +V P
Sbjct: 330 MVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPT 389
Query: 288 TVTIVSVLPACLKLAALPQGLGTGS-----------------FVWNALIDMYGRCGAIQK 330
T ++L A LA L G S FV N+LIDMY +CG++++
Sbjct: 390 HYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEE 449
Query: 331 SRKIFVLMPHKNLVSWNVMISVYG 354
++F M K+ VSWN MI Y
Sbjct: 450 GLRVFENMVEKDHVSWNTMIIGYA 473
>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g15510, chloroplastic-like [Cucumis sativus]
Length = 878
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/376 (26%), Positives = 176/376 (46%), Gaps = 75/376 (19%)
Query: 18 LCAFLGSQLLEVFC---------------------NWTSMMGMYNVLGYYEEIVNLFYLM 56
LC LG+ LL +F +W ++G Y G ++E +NL++ M
Sbjct: 130 LCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRM 189
Query: 57 IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM 116
+ +RP+ + P V K C+ + D GK+++ ++I FE
Sbjct: 190 LWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFE------------------- 230
Query: 117 EITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGF 176
D V N+LI Y KC + + F K+ ++D +SWNAM++GY G
Sbjct: 231 -----------SDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGG 279
Query: 177 REEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-------- 228
E L M + D P+ I+++ V +AC + +LG+ +HGYV++
Sbjct: 280 GLEGLELFSMMRELSVD--PDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMN 337
Query: 229 ---IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK 285
I + ++ G + + +VF+++ ++DVV W ++I++ V A++ + + + +
Sbjct: 338 NSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGIL 397
Query: 286 PNTVTIVSVLPAC-----------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKI 334
P+ +T+VSVL AC L A+ GL + V N+LIDMY +C + + ++
Sbjct: 398 PDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEV 457
Query: 335 FVLMPHKNLVSWNVMI 350
F + KN+VSW +I
Sbjct: 458 FRNISGKNVVSWTSLI 473
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 179/398 (44%), Gaps = 85/398 (21%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G ++HAH+I G E +G+ L+ ++ +W +M+ Y
Sbjct: 217 GKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFE 276
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G E + LF +M + V PD V AC L + R+G+ V+ Y++ +F G
Sbjct: 277 NGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGG---- 332
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
D +NNSLI Y+ L+ + FS+++ KD+V
Sbjct: 333 --------------------------DISMNNSLIQMYSSLGRLEEAETVFSRMESKDVV 366
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW AM+A + ME+ + P+ I+L VL+ACA + + LG +H
Sbjct: 367 SWTAMIASLVSHKLPFKAVETYKMMEL--EGILPDEITLVSVLSACACIGHLDLGIRLHE 424
Query: 223 YVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
++ H+ +S + C V + VF +S ++VV W S+I + + +
Sbjct: 425 IAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFE 484
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALID 320
AL R + ++KPN+VT++SVL AC ++ AL + G+G F+ NA++D
Sbjct: 485 ALLFFRQ-MKESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILD 543
Query: 321 MYGRCGAIQKSRKIFVL----MPHKNLVSWNVMISVYG 354
MY RCG RK+ L K++ +WN++++ Y
Sbjct: 544 MYVRCG-----RKVPALNQFNSQKKDVTAWNILLTGYA 576
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 119/242 (49%), Gaps = 24/242 (9%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
+ N+L+ + + L + F K+ ++D+ SWN ++ GYA G +E NL M+
Sbjct: 134 LGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYH--RMLW 191
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVIC 240
+++PN + VL CA V + GK IH +V+R I + CG +
Sbjct: 192 AEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISN 251
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ +F+++ RD + WN++IS + +G ++ L+L + +V P+ +T+ +V AC
Sbjct: 252 ARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACEL 311
Query: 301 LAALPQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L G G +V N+LI MY G ++++ +F M K++VSW M
Sbjct: 312 LDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAM 371
Query: 350 IS 351
I+
Sbjct: 372 IA 373
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 154/336 (45%), Gaps = 40/336 (11%)
Query: 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRP-----DHFVCPKV-YKACSELKDYRVGKDV 87
S++ MY+ LG EE +F M K V V K+ +KA K + +
Sbjct: 338 NSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGIL 397
Query: 88 YDYMISIK-FEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL 146
D + + AC+ LDL I+ + I +GL + +V+NSLID Y+KC+ +
Sbjct: 398 PDEITLVSVLSACACIGH--LDLGIRLHEIAIKTGLVSHV----IVSNSLIDMYSKCKCV 451
Query: 147 KVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
+ F I K++VSW +++ G + E +M + M+PN+++L VL+
Sbjct: 452 DNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM---KESMKPNSVTLISVLS 508
Query: 207 ACAQVKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVV 255
ACA++ + GK IH + LR + + CG + + + FN +DV
Sbjct: 509 ACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNS-QKKDVTA 567
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW 315
WN +++ + + GQ A++L ++ + P+ +T +S+L AC K + +GL + +
Sbjct: 568 WNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMK 627
Query: 316 NA------------LIDMYGRCGAIQKSRKIFVLMP 339
N ++D+ GR G + + MP
Sbjct: 628 NKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMP 663
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 78/151 (51%), Gaps = 19/151 (12%)
Query: 214 VKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
V+LG A+ +R G ++ + VF ++S RDV WN ++ + ++G +AL
Sbjct: 132 VRLGNALLSMFVRF--------GNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEAL 183
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALIDMY 322
+L ++ A ++PN T SVL C ++ + + G + V NALI MY
Sbjct: 184 NLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMY 243
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+CG I +R +F MP ++ +SWN MIS Y
Sbjct: 244 VKCGDISNARMLFDKMPKRDRISWNAMISGY 274
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/332 (27%), Positives = 167/332 (50%), Gaps = 25/332 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ + G EE + LF M + RP+ V AC++ D G+ DY+
Sbjct: 199 SWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYI 258
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSH 150
+ N + +LD+++KCG +E LF++M++ +V+ ++ID YAK +
Sbjct: 259 ERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAAR 318
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + ++D+ +WNA+++ Y G +E + E+++ + +PN ++L+ LAACAQ
Sbjct: 319 RVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQL-NKNTKPNEVTLASTLAACAQ 377
Query: 211 VKGVKLGKAIHGYVLRHHI----HLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ + LG IH Y+ + I H++T+ CG + + VF + RDV VW+++
Sbjct: 378 LGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAM 437
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------G 307
I+ G A+DL + VKPN VT ++L AC + + G
Sbjct: 438 IAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYG 497
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+ GS + ++D+ GR G ++++ ++ MP
Sbjct: 498 VVPGSKHYACMVDILGRAGCLEEAVELIEKMP 529
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 102/424 (24%), Positives = 187/424 (44%), Gaps = 110/424 (25%)
Query: 6 QVHAHLIVCGV-----------ELCAFLGSQLLEVFC------------NWTSMMGMYNV 42
Q+HAH++ G+ CA L+ C W +++ +
Sbjct: 48 QLHAHMLRTGLFFDPPSATKLFTACALSSPSSLDYACKVFDQIPRPNLYTWNTLIRAFAS 107
Query: 43 LGYYEEIVNLFYLMIDKGVR-PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+ + +F M+ + R P+ + P V KA +E+ G+ ++ ++ F
Sbjct: 108 SPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASF----- 162
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
D ++NSLI FY+ L ++ FSKI +KD+
Sbjct: 163 -------------------------GSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDI 197
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSWN+M++G+ GG EE L M+M + +PN +++ GVL+ACA+ ++ G+
Sbjct: 198 VSWNSMISGFVQGGSPEEALQLFKRMKM--ENARPNRVTMVGVLSACAKRIDLEFGRWAC 255
Query: 222 GYVLRHHIH----LSTA-------CGFVICSCSVFNQLSTRDVV---------------- 254
Y+ R+ I LS A CG + + +F+++ +D+V
Sbjct: 256 DYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYD 315
Query: 255 ---------------VWNSIISAFVRSGQVVDALDLLRDV-IVANVKPNTVTIVSVLPAC 298
WN++IS++ ++G+ +AL + R++ + N KPN VT+ S L AC
Sbjct: 316 AARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAAC 375
Query: 299 LKLAAL-----------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
+L A+ QG+ + +LIDMY +CG ++K+ ++F + +++ W+
Sbjct: 376 AQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWS 435
Query: 348 VMIS 351
MI+
Sbjct: 436 AMIA 439
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 121/228 (53%), Gaps = 26/228 (11%)
Query: 151 CK-FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ-PNTISLSGVLAAC 208
CK F +I + +L +WN ++ +A + + LL ++M+ + PN+ + V+ A
Sbjct: 84 CKVFDQIPRPNLYTWNTLIRAFASSP--KPIQGLLVFIQMLHESQRFPNSYTFPFVIKAA 141
Query: 209 AQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWN 257
+V + G+AIHG V++ IH ++ G + + VF+++ +D+V WN
Sbjct: 142 TEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWN 201
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------Q 306
S+IS FV+ G +AL L + + + N +PN VT+V VL AC K L
Sbjct: 202 SMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERN 261
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G+ + NA++DMY +CG+++ +R++F M K++VSW MI Y
Sbjct: 262 GIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYA 309
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 30/184 (16%)
Query: 195 QPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI--------HLSTACGFVICS----- 241
P+T+ + ++ CA K +K +H ++LR + L TAC S
Sbjct: 29 NPSTVPI--LIDKCANKKHLK---QLHAHMLRTGLFFDPPSATKLFTACALSSPSSLDYA 83
Query: 242 CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK-PNTVTIVSVLPACLK 300
C VF+Q+ ++ WN++I AF S + + L + ++ + + PN+ T V+ A +
Sbjct: 84 CKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATE 143
Query: 301 LAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
+++L G G+ F+ N+LI Y G + + +F + K++VSWN M
Sbjct: 144 VSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSM 203
Query: 350 ISVY 353
IS +
Sbjct: 204 ISGF 207
>gi|356577133|ref|XP_003556682.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Glycine max]
Length = 773
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 109/397 (27%), Positives = 178/397 (44%), Gaps = 76/397 (19%)
Query: 1 MELGIQVHA--------HLIV----------CGVELCAFLGSQLL---EVFCNWTSMMGM 39
+ELG Q+HA +LIV CG AF + +V C WT+M+
Sbjct: 355 LELGKQIHARILKSRWRNLIVDNAVVHFYAKCGNISSAFRAFDCMAERDVIC-WTTMITA 413
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ G+ E +++ M+ G P+ + KAC E K + G ++ +I
Sbjct: 414 CSQQGFGHEALSMLSQMLSDGFYPNEYTICSALKACGENKALKFGTQLHGAIIK------ 467
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ D + SL+D YAKC + S F +++ +
Sbjct: 468 ------------------------KICKSDVFIGTSLVDMYAKCGVMVDSKVVFDRMRIR 503
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+ +W ++++GYA GF EE T+ M+M + + N +++ VL AC +K + G+
Sbjct: 504 NTATWTSIISGYARNGFGEEATSFFRLMKMKR--IHVNKLTVLSVLMACGTIKSLLFGRE 561
Query: 220 IHGYVLRHHIHLSTACGFVI----CSC-------SVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H +++ +IH + G + C C V + RDVV W +IIS R G
Sbjct: 562 VHAQIIKSNIHTNIYVGSTLVWFYCKCKEYSYAFKVLQYMPFRDVVSWTAIISGCARLGL 621
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNA 317
+AL+ L++++ V PN+ T S L AC +L A QG + FV +A
Sbjct: 622 EHEALEFLQEMMEEGVLPNSYTYSSALKACAELEAPIQGKLIHSYASKTPASSNVFVNSA 681
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
LI MY +CG + + ++F MP +N+VSW MI Y
Sbjct: 682 LIYMYSKCGYVADAFQVFDNMPERNVVSWESMILAYA 718
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 139/332 (41%), Gaps = 68/332 (20%)
Query: 1 MELGIQVHAHLI--VCGVELCAFLGSQLLEVFC---------------------NWTSMM 37
++ G Q+H +I +C ++ F+G+ L++++ WTS++
Sbjct: 455 LKFGTQLHGAIIKKICKSDV--FIGTSLVDMYAKCGVMVDSKVVFDRMRIRNTATWTSII 512
Query: 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
Y G+ EE + F LM K + + V AC +K G++V+ +I
Sbjct: 513 SGYARNGFGEEATSFFRLMKMKRIHVNKLTVLSVLMACGTIKSLLFGREVHAQIIKSNIH 572
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
N V ++L+ FY KC+ + +
Sbjct: 573 TN------------------------------IYVGSTLVWFYCKCKEYSYAFKVLQYMP 602
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+D+VSW A+++G A G E L EM++ + PN+ + S L ACA+++ G
Sbjct: 603 FRDVVSWTAIISGCARLGLEHEALEFL--QEMMEEGVLPNSYTYSSALKACAELEAPIQG 660
Query: 218 KAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
K IH Y + I++ + CG+V + VF+ + R+VV W S+I A+ R+
Sbjct: 661 KLIHSYASKTPASSNVFVNSALIYMYSKCGYVADAFQVFDNMPERNVVSWESMILAYARN 720
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
G +AL L+ + + +V+ AC
Sbjct: 721 GHAREALKLMHRMQAEGFVVDDYIHTTVISAC 752
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 113/244 (46%), Gaps = 23/244 (9%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V+N+LI Y + L + F + +K+ V+W A++ GY +E L + ++
Sbjct: 275 VDNNLICSYLRLGKLAQARRVFDGMSRKNTVTWTAIIDGYLKFNLDDEAFKLF--QDCVK 332
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----------IHLSTACGFVICS 241
+ N+ ++ C + ++LGK IH +L+ +H CG + +
Sbjct: 333 HGVPANSKMFVCIMNLCGRRVDLELGKQIHARILKSRWRNLIVDNAVVHFYAKCGNISSA 392
Query: 242 CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
F+ ++ RDV+ W ++I+A + G +AL +L ++ PN TI S L AC +
Sbjct: 393 FRAFDCMAERDVICWTTMITACSQQGFGHEALSMLSQMLSDGFYPNEYTICSALKACGEN 452
Query: 302 AALPQGL-----------GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
AL G + F+ +L+DMY +CG + S+ +F M +N +W +I
Sbjct: 453 KALKFGTQLHGAIIKKICKSDVFIGTSLVDMYAKCGVMVDSKVVFDRMRIRNTATWTSII 512
Query: 351 SVYG 354
S Y
Sbjct: 513 SGYA 516
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 21/154 (13%)
Query: 220 IHGYVLRHHIHLSTAC-GFVICSC----------SVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H VL+ IH T +ICS VF+ +S ++ V W +II +++
Sbjct: 260 VHTIVLKFFIHPVTYVDNNLICSYLRLGKLAQARRVFDGMSRKNTVTWTAIIDGYLKFNL 319
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----W------NAL 318
+A L +D + V N+ V ++ C + L G + + W NA+
Sbjct: 320 DDEAFKLFQDCVKHGVPANSKMFVCIMNLCGRRVDLELGKQIHARILKSRWRNLIVDNAV 379
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+ Y +CG I + + F M ++++ W MI+
Sbjct: 380 VHFYAKCGNISSAFRAFDCMAERDVICWTTMITA 413
>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Cucumis sativus]
Length = 878
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/376 (26%), Positives = 176/376 (46%), Gaps = 75/376 (19%)
Query: 18 LCAFLGSQLLEVFC---------------------NWTSMMGMYNVLGYYEEIVNLFYLM 56
LC LG+ LL +F +W ++G Y G ++E +NL++ M
Sbjct: 130 LCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRM 189
Query: 57 IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM 116
+ +RP+ + P V K C+ + D GK+++ ++I FE
Sbjct: 190 LWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFE------------------- 230
Query: 117 EITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGF 176
D V N+LI Y KC + + F K+ ++D +SWNAM++GY G
Sbjct: 231 -----------SDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGG 279
Query: 177 REEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-------- 228
E L M + D P+ I+++ V +AC + +LG+ +HGYV++
Sbjct: 280 GLEGLELFSMMRELSVD--PDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMN 337
Query: 229 ---IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK 285
I + ++ G + + +VF+++ ++DVV W ++I++ V A++ + + + +
Sbjct: 338 NSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGIL 397
Query: 286 PNTVTIVSVLPAC-----------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKI 334
P+ +T+VSVL AC L A+ GL + V N+LIDMY +C + + ++
Sbjct: 398 PDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEV 457
Query: 335 FVLMPHKNLVSWNVMI 350
F + KN+VSW +I
Sbjct: 458 FRNISGKNVVSWTSLI 473
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 179/398 (44%), Gaps = 85/398 (21%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G ++HAH+I G E +G+ L+ ++ +W +M+ Y
Sbjct: 217 GKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFE 276
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G E + LF +M + V PD V AC L + R+G+ V+ Y++ +F G
Sbjct: 277 NGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGG---- 332
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
D +NNSLI Y+ L+ + FS+++ KD+V
Sbjct: 333 --------------------------DISMNNSLIQMYSSLGRLEEAETVFSRMESKDVV 366
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW AM+A + ME+ + P+ I+L VL+ACA + + LG +H
Sbjct: 367 SWTAMIASLVSHKLPFKAVETYKMMEL--EGILPDEITLVSVLSACACIGHLDLGIRLHE 424
Query: 223 YVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
++ H+ +S + C V + VF +S ++VV W S+I + + +
Sbjct: 425 IAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFE 484
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALID 320
AL R + ++KPN+VT++SVL AC ++ AL + G+G F+ NA++D
Sbjct: 485 ALLFFRQ-MKESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILD 543
Query: 321 MYGRCGAIQKSRKIFVL----MPHKNLVSWNVMISVYG 354
MY RCG RK+ L K++ +WN++++ Y
Sbjct: 544 MYVRCG-----RKVPALNQFNSQKKDVTAWNILLTGYA 576
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 119/242 (49%), Gaps = 24/242 (9%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
+ N+L+ + + L + F K+ ++D+ SWN ++ GYA G +E NL M+
Sbjct: 134 LGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYH--RMLW 191
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVIC 240
+++PN + VL CA V + GK IH +V+R I + CG +
Sbjct: 192 AEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISN 251
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ +F+++ RD + WN++IS + +G ++ L+L + +V P+ +T+ +V AC
Sbjct: 252 ARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACEL 311
Query: 301 LAALPQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L G G +V N+LI MY G ++++ +F M K++VSW M
Sbjct: 312 LDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAM 371
Query: 350 IS 351
I+
Sbjct: 372 IA 373
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 154/336 (45%), Gaps = 40/336 (11%)
Query: 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRP-----DHFVCPKV-YKACSELKDYRVGKDV 87
S++ MY+ LG EE +F M K V V K+ +KA K + +
Sbjct: 338 NSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGIL 397
Query: 88 YDYMISIK-FEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL 146
D + + AC+ LDL I+ + I +GL + +V+NSLID Y+KC+ +
Sbjct: 398 PDEITLVSVLSACACIGH--LDLGIRLHEIAIKTGLVSHV----IVSNSLIDMYSKCKCV 451
Query: 147 KVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
+ F I K++VSW +++ G + E +M + M+PN+++L VL+
Sbjct: 452 DNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM---KESMKPNSVTLISVLS 508
Query: 207 ACAQVKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVV 255
ACA++ + GK IH + LR + + CG + + + FN +DV
Sbjct: 509 ACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNS-QKKDVTA 567
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW 315
WN +++ + + GQ A++L ++ + P+ +T +S+L AC K + +GL + +
Sbjct: 568 WNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMK 627
Query: 316 NA------------LIDMYGRCGAIQKSRKIFVLMP 339
N ++D+ GR G + + MP
Sbjct: 628 NKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMP 663
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 78/151 (51%), Gaps = 19/151 (12%)
Query: 214 VKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
V+LG A+ +R G ++ + VF ++S RDV WN ++ + ++G +AL
Sbjct: 132 VRLGNALLSMFVRF--------GNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEAL 183
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALIDMY 322
+L ++ A ++PN T SVL C ++ + + G + V NALI MY
Sbjct: 184 NLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMY 243
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+CG I +R +F MP ++ +SWN MIS Y
Sbjct: 244 VKCGDISNARMLFDKMPKRDRISWNAMISGY 274
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 167/342 (48%), Gaps = 56/342 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ +++ + + LM +G P++F P V KAC+ L D ++G ++ ++
Sbjct: 80 WNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVV 139
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F D D V SL+ YAKC YL+ +H
Sbjct: 140 KGGF------------------------------DCDVFVKTSLVCLYAKCGYLEDAHKV 169
Query: 153 FSKIKQKDLVSWNAMLAGY-ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F I K++VSW A+++GY +G FRE + +EM ++ P++ ++ VL+AC Q+
Sbjct: 170 FDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEM---NLAPDSFTIVRVLSACTQL 226
Query: 212 KGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ G+ IH +V + + CG + + SVF+ + +D+V W ++I
Sbjct: 227 GDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMI 286
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTGSFV 314
+ +G +A+DL + NVKP+ T+V VL AC +L AL G + F+
Sbjct: 287 QGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFL 346
Query: 315 WN-----ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+N ALID+Y +CG++ ++ ++F M K+ V WN +IS
Sbjct: 347 YNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIIS 388
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/397 (23%), Positives = 182/397 (45%), Gaps = 77/397 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++LG+++H ++ G + F+ + L+ ++ +WT+++
Sbjct: 128 LQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISG 187
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y +G + E +++F +++ + PD F +V AC++L D G+ ++
Sbjct: 188 YIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIH----------- 236
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
C+ ME+ M ++ V SL+D YAKC ++ + F + +K
Sbjct: 237 KCI-------------MEMG------MVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEK 277
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSW AM+ GYAL G +E +L ++M + +++P+ ++ GVL+ACA++ ++LG+
Sbjct: 278 DIVSWGAMIQGYALNGLPKEAIDLF--LQMQRENVKPDCYTVVGVLSACARLGALELGEW 335
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+ G V R+ I L CG + + VF + +D VVWN+IIS +G
Sbjct: 336 VSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGY 395
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWN 316
V + L V +KP+ T + +L C + +G L +
Sbjct: 396 VKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYG 455
Query: 317 ALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
++D+ GR G + ++ ++ MP N + W ++
Sbjct: 456 CMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGA 492
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 120/248 (48%), Gaps = 28/248 (11%)
Query: 133 NNSLIDFYAKCRY----LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
+N L++ +C + + F +IKQ ++ WN M+ G ++ M
Sbjct: 45 DNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMR 104
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGF 237
PN + VL ACA++ ++LG IH V++ L CG+
Sbjct: 105 --SEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGY 162
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ + VF+ + ++VV W +IIS ++ G+ +A+D+ R ++ N+ P++ TIV VL A
Sbjct: 163 LEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSA 222
Query: 298 CLKLAAL-----------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
C +L L G+ FV +L+DMY +CG ++K+R +F MP K++VSW
Sbjct: 223 CTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSW 282
Query: 347 NVMISVYG 354
MI Y
Sbjct: 283 GAMIQGYA 290
>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
Length = 1020
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 161/345 (46%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT ++G Y G+ E +F M +GV P+ V A S + GK V+ ++
Sbjct: 312 SWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHI 371
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
++ E + V L+ ++ KCG Y CR +
Sbjct: 372 LNAGHESDLAVGTALVKMYAKCGS------------------------YKDCRQV----- 402
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K+ +DL++WN M+ G A GG EE + + +M+ + M PN I+ +L AC
Sbjct: 403 -FEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQ--REGMMPNKITYVILLNACVNP 459
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ G+ IH V++ I + CG + + +FN++ +D++ W ++I
Sbjct: 460 TALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMI 519
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLG 309
+SG +AL + +D+ A +KPN VT S+L AC AAL GL
Sbjct: 520 GGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLA 579
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
T + V N L++MY CG+++ +R++F M +++V++N MI Y
Sbjct: 580 TDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYA 624
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/393 (21%), Positives = 172/393 (43%), Gaps = 75/393 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
++ G VH+H++ G E +G+ L++++ W +M+G
Sbjct: 361 LKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGG 420
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
G +EE +++ M +G+ P+ + AC G++++ ++ F +
Sbjct: 421 LAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFD 480
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V+ L+ ++ +CG +K + F+K+ +K
Sbjct: 481 ISVQNALISMYARCGS------------------------------IKDARLLFNKMVRK 510
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D++SW AM+ G A G E + +M+ Q ++PN ++ + +L AC+ + G+
Sbjct: 511 DIISWTAMIGGLAKSGLGAEALAVFQDMQ--QAGLKPNRVTYTSILNACSSPAALDWGRR 568
Query: 220 IH-----------GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH +V +++ + CG V + VF++++ RD+V +N++I +
Sbjct: 569 IHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNL 628
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNA 317
+AL L + +KP+ VT +++L AC +L G + + + NA
Sbjct: 629 GKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNA 688
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
L+ Y +CG+ + +F M +N++SWN +I
Sbjct: 689 LVSTYAKCGSFSDALLVFDKMMKRNVISWNAII 721
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/341 (26%), Positives = 144/341 (42%), Gaps = 54/341 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y GY EE + L M G+ ++ +C
Sbjct: 211 SWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSC---------------- 254
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
K P ++CGR + + D V N +++ YAKC + +
Sbjct: 255 -----------KSPSA---LECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEARE 300
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K++ K +VSW ++ GYA G E + +M+ Q + PN I+ VL A +
Sbjct: 301 VFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQ--QEGVVPNRITYINVLNAFSGP 358
Query: 212 KGVKLGKAIHGYVLR--HHIHLSTA---------CGFVICSCSVFNQLSTRDVVVWNSII 260
+K GK +H ++L H L+ CG VF +L RD++ WN++I
Sbjct: 359 AALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMI 418
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-------- 312
G +A ++ + + PN +T V +L AC+ AL G S
Sbjct: 419 GGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFM 478
Query: 313 ---FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
V NALI MY RCG+I+ +R +F M K+++SW MI
Sbjct: 479 FDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMI 519
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 82/343 (23%), Positives = 148/343 (43%), Gaps = 56/343 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+G G E + +F M G++P+ + ACS G+ ++ +
Sbjct: 514 SWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQV 573
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I +GL D V N+L++ Y+ C +K +
Sbjct: 574 IE--------------------------AGLA----TDAHVANTLVNMYSMCGSVKDARQ 603
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ Q+D+V++NAM+ GYA +E L D ++ + ++P+ ++ +L ACA
Sbjct: 604 VFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQ--EEGLKPDKVTYINMLNACANS 661
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCS-----------VFNQLSTRDVVVWNSII 260
++ K IH VL+ T+ G + S VF+++ R+V+ WN+II
Sbjct: 662 GSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAII 721
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------LGT 310
+ G+ D L L + + +KP+ VT VS+L AC L +G G
Sbjct: 722 GGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGI 781
Query: 311 GSFV--WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ + ++D+ GR G + + + MP N W ++
Sbjct: 782 TPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALL 824
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 144/314 (45%), Gaps = 52/314 (16%)
Query: 59 KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEI 118
+G R + K+ K C E+KD G++V++++I + L++++I+CG +E
Sbjct: 135 QGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIE- 193
Query: 119 TSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFRE 178
A+ + K++H ++ + SWNAM+ GY G+ E
Sbjct: 194 ---------------------EARQVWNKLNHT------ERTVHSWNAMVVGYVQYGYIE 226
Query: 179 EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI--------- 229
E LL EM+ Q + + +L++C ++ G+ IH ++ +
Sbjct: 227 EALKLLREMQ--QHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANC 284
Query: 230 --HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
++ CG + + VF+++ T+ VV W II + G A ++ + + V PN
Sbjct: 285 ILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPN 344
Query: 288 TVTIVSVLPACLKLAALPQGLGTGSFVWN-----------ALIDMYGRCGAIQKSRKIFV 336
+T ++VL A AAL G S + N AL+ MY +CG+ + R++F
Sbjct: 345 RITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFE 404
Query: 337 LMPHKNLVSWNVMI 350
+ +++L++WN MI
Sbjct: 405 KLVNRDLIAWNTMI 418
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 94/188 (50%), Gaps = 24/188 (12%)
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH-----------HIHLSTACGFVI 239
Q + N+ +L C +VK + G+ +H ++++H I++ CG +
Sbjct: 134 QQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIE 193
Query: 240 CSCSVFNQL--STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ V+N+L + R V WN+++ +V+ G + +AL LLR++ + T + +L +
Sbjct: 194 EARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSS 253
Query: 298 CLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
C +AL G L V N +++MY +CG+I ++R++F M K++VSW
Sbjct: 254 CKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSW 313
Query: 347 NVMISVYG 354
++I Y
Sbjct: 314 TIIIGGYA 321
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/228 (20%), Positives = 96/228 (42%), Gaps = 42/228 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGS--QLLEVFCNWT--------SMMGMYNVLGYYEEIV 50
+E G+ AH+ V + + GS +VF T +M+G Y +E +
Sbjct: 574 IEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEAL 633
Query: 51 NLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLF 110
LF + ++G++PD + AC+ K+++ ++ + + + L+ +
Sbjct: 634 KLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTY 693
Query: 111 IKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAG 170
KCG LV F K+ +++++SWNA++ G
Sbjct: 694 AKCG----------SFSDALLV--------------------FDKMMKRNVISWNAIIGG 723
Query: 171 YALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
A G ++V L + M+M ++P+ ++ +L+AC+ ++ G+
Sbjct: 724 CAQHGRGQDVLQLFERMKM--EGIKPDIVTFVSLLSACSHAGLLEEGR 769
>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
Length = 650
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/345 (23%), Positives = 176/345 (51%), Gaps = 29/345 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKG--VRPDHFVCPKVYKACSELKDYRVGKDVYD 89
+W +++G Y G E + LF+ +++ G VRPD C+++ D +GK +++
Sbjct: 189 SWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHE 248
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKV 148
++ S + ++D+++KCG +E+ +FE +D +V+ ++I +A+ ++
Sbjct: 249 FVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHARLGMMED 308
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
+ F ++ ++D+ WNA++AGY +E L EM+ ++ + PN I++ +L+AC
Sbjct: 309 ARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQ--ESKVDPNEITMVNLLSAC 366
Query: 209 AQVKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWN 257
+Q+ +++G +H Y+ RH ++LS A CG + + +F ++ ++ + W
Sbjct: 367 SQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIPDKNALTWT 426
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV--- 314
++I G +A++ + +I ++P+ +T + VL AC + +G S +
Sbjct: 427 AMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVKEGRQFFSLMHEK 486
Query: 315 ---------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVM 349
++ +ID+ GR G + ++ ++ MP + V W +
Sbjct: 487 YHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMDPDAVVWGAL 531
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/349 (23%), Positives = 151/349 (43%), Gaps = 83/349 (23%)
Query: 55 LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG 114
L+ RPDH P + KAC+ L+ G V ++ + F
Sbjct: 111 LLCSSSARPDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSA---------------- 154
Query: 115 RMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALG 174
D V N+ + F++ + ++ F + +D+VSWN ++ GY
Sbjct: 155 --------------DVFVVNAGVHFWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRS 200
Query: 175 GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIH 230
G E L + ++P+ +++ G ++ CAQ+ ++LGK +H +V +R +
Sbjct: 201 GLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVR 260
Query: 231 LSTA-------CGFVICSCSV-------------------------------FNQLSTRD 252
L A CG + + SV F+++ RD
Sbjct: 261 LMNAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERD 320
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS 312
V WN++++ +V++ Q +A+ L ++ + V PN +T+V++L AC +L AL G+
Sbjct: 321 VFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHH 380
Query: 313 FV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
++ +L+DMY +CG I+K+ IF +P KN ++W MI
Sbjct: 381 YIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMI 429
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 123/314 (39%), Gaps = 56/314 (17%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W ++M Y +E + LF+ M + V P+ + ACS+L +G V+ Y
Sbjct: 324 WNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHY-- 381
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ R L L + G SL+D YAKC +K + C
Sbjct: 382 ---------IDRHQLYLSVALG-------------------TSLVDMYAKCGNIKKAICI 413
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F +I K+ ++W AM+ G A G +E M I +QP+ I+ GVL+AC
Sbjct: 414 FKEIPDKNALTWTAMICGLANHGHADEAIEYFQRM--IDLGLQPDEITFIGVLSACCHAG 471
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
VK G+ ++ HL C + + D + Q+V+
Sbjct: 472 LVKEGRQFFS-LMHEKYHLERKMKHYSCMIDLLGRAGHLD------------EAEQLVNT 518
Query: 273 LDLLRDVIV------ANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCG 326
+ + D +V A +T+ A +KL L + S ++ L +MY
Sbjct: 519 MPMDPDAVVWGALFFACRMHGNITLGE--KAAMKLVELDP---SDSGIYVLLANMYAEAN 573
Query: 327 AIQKSRKIFVLMPH 340
+K+ K+ V+M H
Sbjct: 574 MRKKADKVRVMMRH 587
>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 828
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/423 (26%), Positives = 188/423 (44%), Gaps = 106/423 (25%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G+QVH ++ G+ F+ + L+ + +WTS++ Y+V
Sbjct: 141 GVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSV 200
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+ +E V LF+ M++ GV P+ AC++LKD +GK V + M + + N V
Sbjct: 201 VNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLV 260
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
LLD+++KCG M +F+E FS K+LV
Sbjct: 261 VNALLDMYMKCGDMYAVREIFDE---------------------------FS---DKNLV 290
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+N +++ Y G EV +LD EM+Q +P+ +++ +AACAQ+ + +GK+ H
Sbjct: 291 MYNTIMSNYVQHGLAGEVLVVLD--EMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHA 348
Query: 223 YVLRHHI----HLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV-- 269
YV R+ + ++S A CG +C VF+ +S + VV WNS+I+ VR G++
Sbjct: 349 YVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELEL 408
Query: 270 -----------------------------VDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+A+DLLR++ +K + VT+V + AC
Sbjct: 409 ALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGY 468
Query: 301 LAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L AL +++ AL+DM+ RCG + ++F M +++ +W
Sbjct: 469 LGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAA 528
Query: 350 ISV 352
I V
Sbjct: 529 IRV 531
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/327 (25%), Positives = 167/327 (51%), Gaps = 54/327 (16%)
Query: 47 EEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPL 106
E I +++I G+ PD+F P + ACS++ + G V+ ++ +
Sbjct: 104 EAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKM------------ 151
Query: 107 LDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNA 166
GL +D V NSLI FYA C + + F ++ ++++VSW +
Sbjct: 152 --------------GLV----KDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTS 193
Query: 167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI------ 220
++ GY++ +E L EM++ ++PN +++ ++ACA++K ++LGK +
Sbjct: 194 LINGYSVVNMAKEAVCLF--FEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTE 251
Query: 221 -----HGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDL 275
+ V+ + + CG + +F++ S +++V++N+I+S +V+ G + L +
Sbjct: 252 LGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVV 311
Query: 276 LRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW-----------NALIDMYGR 324
L +++ +P+ VT++S + AC +L L G + ++V+ NA+IDMY +
Sbjct: 312 LDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMK 371
Query: 325 CGAIQKSRKIFVLMPHKNLVSWNVMIS 351
CG + + K+F M +K +V+WN +I+
Sbjct: 372 CGKREAACKVFDSMSNKTVVTWNSLIA 398
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 159/344 (46%), Gaps = 27/344 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
+ ++M Y G E++ + M+ KG RPD AC++L D VGK + Y+
Sbjct: 292 YNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVF 351
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHC 151
E + ++D+++KCG+ E +F+ M +V NSLI + L+++
Sbjct: 352 RNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALR 411
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ + +LVSWN M+ EE +LL EM+ ++ + +++ G+ +AC +
Sbjct: 412 IFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQ--NQGIKGDRVTMVGIASACGYL 469
Query: 212 KGVKLGKAIHGYVLRHHIH----LSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ L K I+ Y+ ++ IH L TA CG + + VF + RDV W + I
Sbjct: 470 GALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAI 529
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL----------GT 310
G A++L +++ +VK + V++L A + QG G
Sbjct: 530 RVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGV 589
Query: 311 GSFV--WNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMIS 351
+ + ++D+ GR G ++++ + MP K N V W ++
Sbjct: 590 SPQIVHYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLA 633
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 106/215 (49%), Gaps = 23/215 (10%)
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
L + N ++ GYA G +E + M +I + P+ + +L+AC+++ G +
Sbjct: 86 LYTCNTLIRGYAASGLCKEAIFIYLHM-IIVMGIVPDNFTFPFLLSACSKIMAFSEGVQV 144
Query: 221 HGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
HG V++ IH ACG V VF+++ R+VV W S+I+ +
Sbjct: 145 HGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMA 204
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWNAL 318
+A+ L +++ V+PN VT+V + AC KL L G+ + + V NAL
Sbjct: 205 KEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNAL 264
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+DMY +CG + R+IF KNLV +N ++S Y
Sbjct: 265 LDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNY 299
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 105/269 (39%), Gaps = 54/269 (20%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+G +EE ++L M ++G++ D + AC L + K +Y Y+
Sbjct: 423 SWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYI 482
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + L+D+F +CG +FE M+
Sbjct: 483 EKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENME------------------------ 518
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
++D+ +W A + A+ G + L D EM++ D++ + +L A +
Sbjct: 519 ------KRDVSAWTAAIRVKAVEGNAKGAIELFD--EMLKQDVKADDFVFVALLTAFSHG 570
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V G+ + + + H V Q +V + ++ R+G + +
Sbjct: 571 GYVDQGRQLFWAMEKIH--------------GVSPQ-----IVHYGCMVDLLGRAGLLEE 611
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLK 300
A DL++ + +KPN V S L AC K
Sbjct: 612 AFDLMKSM---PIKPNDVIWGSFLAACRK 637
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 166/332 (50%), Gaps = 25/332 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ + G ++ + LF M + V+ H V AC++++D G+ V Y+
Sbjct: 201 SWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYI 260
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSH 150
+ N + +LD++ KCG +E LF+ M++ D + +++D YA + +
Sbjct: 261 EENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAR 320
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+ + +KD+V+WNA+++ Y G E + E+++ Q +++ N I+L L+ACAQ
Sbjct: 321 EVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQL-QKNIKLNQITLVSTLSACAQ 379
Query: 211 VKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
V ++LG+ IH Y+ ++ I H+ + CG + + VFN + RDV VW+++
Sbjct: 380 VGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAM 439
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------G 307
I G +A+D+ + ANVKPN VT +V AC + + G
Sbjct: 440 IGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYG 499
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+ + ++D+ GR G ++K+ K MP
Sbjct: 500 IVPEDKHYACIVDVLGRSGYLEKAVKFIEAMP 531
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/414 (23%), Positives = 188/414 (45%), Gaps = 91/414 (21%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH 65
Q HAH+I G+ + S+L + + + + L Y ++ D+ +P+
Sbjct: 49 QTHAHMIRTGMFSDPYSASKLFAI-----AALSSFASLEYARKV-------FDEIPQPNS 96
Query: 66 FVCPKVYKACSELKDYRVGKD----VYDYMISIKFEGNACVKRPLLDLFIKCGRMEITS- 120
F + +A Y G D ++ ++ + E + IK E++S
Sbjct: 97 FTWNTLIRA------YASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAA-AEVSSL 149
Query: 121 ---------GLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK-FSKIKQKDLVSWNAMLAG 170
+ + D V NSLI Y C L S CK F+ IK+KD+VSWN+M+ G
Sbjct: 150 SLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLD-SACKVFTTIKEKDVVSWNSMING 208
Query: 171 YALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH 230
+ G ++ L +ME D++ + +++ GVL+ACA+++ ++ G+ + Y+ + ++
Sbjct: 209 FVQKGSPDKALELFKKME--SEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVN 266
Query: 231 LS-----------TACGFV-------------------------------ICSCSVFNQL 248
++ T CG + + V N +
Sbjct: 267 VNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAM 326
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDV-IVANVKPNTVTIVSVLPACLKLAALP-- 305
+D+V WN++ISA+ ++G+ +AL + ++ + N+K N +T+VS L AC ++ AL
Sbjct: 327 PKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELG 386
Query: 306 ---------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
G+ +V +ALI MY +CG ++K+R++F + +++ W+ MI
Sbjct: 387 RWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMI 440
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 120/226 (53%), Gaps = 26/226 (11%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ--PNTISLSGVLAACAQ 210
F +I Q + +WN ++ YA G + V ++ ++M+ ++ Q PN + ++ A A+
Sbjct: 88 FDEIPQPNSFTWNTLIRAYASGP--DPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAE 145
Query: 211 VKGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
V + LG+++HG +V IH +CG + +C VF + +DVV WNS+
Sbjct: 146 VSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSM 205
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW---- 315
I+ FV+ G AL+L + + +VK + VT+V VL AC K+ L G S++
Sbjct: 206 INGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRV 265
Query: 316 -------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
NA++DMY +CG+I+ ++++F M K+ V+W M+ Y
Sbjct: 266 NVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYA 311
>gi|2191182|gb|AAB61067.1| similar to N. tabacum membrane-associated salt-inducible protein
(PID:g473874) [Arabidopsis thaliana]
Length = 597
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/334 (29%), Positives = 160/334 (47%), Gaps = 59/334 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ + G E+ + LF M G P+ ACS L GK+++
Sbjct: 108 SWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIH--- 164
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
CVK+ E+D+ VN++L+D Y KC L+V+
Sbjct: 165 -------RKCVKKGF------------------ELDE--YVNSALVDMYGKCDCLEVARE 197
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K+ +K LV+WN+M+ GY G + +L+ MI +P+ +L+ +L AC++
Sbjct: 198 VFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILN--RMIIEGTRPSQTTLTSILMACSRS 255
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+ + GK IH + +VF++ WN +IS+++ G
Sbjct: 256 RNLLHGKFIHANLAE----------------TVFSKTQKDVAESWNVMISSYISVGNWFK 299
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALID 320
A+++ ++ VKP+ VT SVLPAC +LAAL +G L T + +AL+D
Sbjct: 300 AVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDELLLSALLD 359
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
MY +CG +++ +IF +P K++VSW VMIS YG
Sbjct: 360 MYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYG 393
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 70/130 (53%), Gaps = 20/130 (15%)
Query: 244 VFNQLSTR-DVVVWNSIISA--------FVRSGQVVDALDLLRDVIVANVKPNTVTIVSV 294
VF R DV +WNS++SA F +SG+ AL+L + + +PN+V++
Sbjct: 88 VFENFDIRSDVYIWNSLMSASWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVA 147
Query: 295 LPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
+ AC +L L +G +V +AL+DMYG+C ++ +R++F MP K+L
Sbjct: 148 ISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSL 207
Query: 344 VSWNVMISVY 353
V+WN MI Y
Sbjct: 208 VAWNSMIKGY 217
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 90/205 (43%), Gaps = 33/205 (16%)
Query: 7 VHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHF 66
+H I + F +Q +V +W M+ Y +G + + V ++ M+ GV+PD
Sbjct: 259 LHGKFIHANLAETVFSKTQK-DVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVV 317
Query: 67 VCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126
V ACS+L GK ++ L I R+E
Sbjct: 318 TFTSVLPACSQLAALEKGKQIH--------------------LSISESRLET-------- 349
Query: 127 DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDE 186
D L+ ++L+D Y+KC K + F+ I +KD+VSW M++ Y G E DE
Sbjct: 350 --DELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDE 407
Query: 187 MEMIQTDMQPNTISLSGVLAACAQV 211
M+ + ++P+ ++L VL+AC
Sbjct: 408 MQ--KFGLKPDGVTLLAVLSACGHA 430
>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 835
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/396 (26%), Positives = 170/396 (42%), Gaps = 74/396 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++LG+Q+HA ++ G L ++ + L+ ++ W SM+
Sbjct: 176 IKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTG 235
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ G Y E + FY + + ++PD + A L GK+++ Y I F
Sbjct: 236 FIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGF--- 292
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D + LV N+LID YAKC + F + K
Sbjct: 293 ---------------------------DSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHK 325
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
DL+SW AGYA + LL +++M D+ I +L AC + + K
Sbjct: 326 DLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIG--SILLACRGLNCLGKIKE 383
Query: 220 IHGYVLRHH----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
IHGY +R I + CG + + +F + +DVV W S+IS +V +G
Sbjct: 384 IHGYTIRGGLSDPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLA 443
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------VWNAL 318
AL++ + ++P+ VT+VS+L A L+ L +G F + N L
Sbjct: 444 NKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTL 503
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+DMY RCG+++ + KIF ++NL+ W MIS YG
Sbjct: 504 VDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYG 539
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/346 (26%), Positives = 162/346 (46%), Gaps = 55/346 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +MMG Y G + ++ M GV D + P + KAC ++D G +++
Sbjct: 25 TWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLLKACGIVEDLFCGAEIHG-- 82
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
++IK+ C D F+ V NSL+ YAKC + +
Sbjct: 83 LAIKY---GC------DSFV-------------------FVVNSLVALYAKCNDINGARK 114
Query: 152 KFSKIK-QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ + D+VSWN++++ Y+ G E L EM ++ + NT + + L AC
Sbjct: 115 LFDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEM--LKAGVVTNTYTFAAALQACED 172
Query: 211 VKGVKLGKAIHGYVLRH----HIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNSI 259
+KLG IH +L+ ++++ A G + + +F L +D+V WNS+
Sbjct: 173 SSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSM 232
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGL 308
++ F+++G +AL+ D+ A++KP+ V+I+S++ A +L A+ G
Sbjct: 233 LTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGF 292
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ V N LIDMY +C + + F LM HK+L+SW + Y
Sbjct: 293 DSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYA 338
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 111/237 (46%), Gaps = 25/237 (10%)
Query: 140 YAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI 199
Y KC + + F K+ ++ + +WNAM+ GY G + EM + T
Sbjct: 2 YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61
Query: 200 SLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQL 248
+ +L AC V+ + G IHG +V+ + L C + + +F+++
Sbjct: 62 PV--LLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRM 119
Query: 249 STR-DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC--------- 298
R DVV WNSIISA+ +G +AL L +++ A V NT T + L AC
Sbjct: 120 YVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLG 179
Query: 299 --LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ A L G +V NAL+ MY R G + ++ IF + K++V+WN M++ +
Sbjct: 180 MQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGF 236
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 116/240 (48%), Gaps = 31/240 (12%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
D ++ N++ID Y +C + + F I+ KD+VSW +M++ Y G + + M
Sbjct: 394 SDPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSM 453
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACG 236
+ +T ++P+ ++L +L+A + +K GK IHG+++R + + CG
Sbjct: 454 K--ETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCG 511
Query: 237 FVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296
V + +F R++++W ++ISA+ G A++L + + P+ +T +++L
Sbjct: 512 SVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLY 571
Query: 297 ACLKLAALPQGLGTGSFV---------------WNALIDMYGRCGAIQKSRKIFVLMPHK 341
AC + +G SF+ + L+D+ GR ++++ +I M ++
Sbjct: 572 ACSHSGLVNEG---KSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNE 628
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 32/188 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ Y G + + +F M + G+ PD+ + A L + GK+++ ++
Sbjct: 429 SWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFI 488
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I F + L+D++ +CG +E D Y K+
Sbjct: 489 IRKGFILEGSISNTLVDMYARCGSVE--------------------DAY------KI--- 519
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ K ++L+ W AM++ Y + G+ E L M M + P+ I+ +L AC+
Sbjct: 520 -FTCTKNRNLILWTAMISAYGMHGYGEAAVELF--MRMKDEKIIPDHITFLALLYACSHS 576
Query: 212 KGVKLGKA 219
V GK+
Sbjct: 577 GLVNEGKS 584
>gi|224084768|ref|XP_002307403.1| predicted protein [Populus trichocarpa]
gi|222856852|gb|EEE94399.1| predicted protein [Populus trichocarpa]
Length = 472
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/394 (27%), Positives = 178/394 (45%), Gaps = 74/394 (18%)
Query: 2 ELGIQVHA--------HLIVCGVELCAFLG-SQLLEVFC-----------NWTSMMGMYN 41
ELG QVHA +LIV + ++ L FC +WT+M+ +
Sbjct: 58 ELGRQVHARVVKGNWRNLIVDSAVVYFYVQCGDLKSAFCVFDRMVERDVVSWTTMITACS 117
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G E +F M++ G P+ F + KAC E K + GK ++ A
Sbjct: 118 QQGRCGEAFGMFTQMLNGGFLPNGFTASGILKACGEEKALKFGKQIH----------GAI 167
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
VK+ D D V SL+D YAKC + S F+ +++++
Sbjct: 168 VKKMYKD--------------------DVFVGTSLVDMYAKCGEVSDSSKVFNGMRRRNT 207
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
V+W +++AGYA G EE L M ++ + N +++ +L AC + + G+ +H
Sbjct: 208 VTWTSIIAGYARKGLGEEAICLFRLM--MRRRVVSNNLTIVSMLRACGLIGALLAGREVH 265
Query: 222 GYVLRH----HIHLSTACGFVICSCS-------VFNQLSTRDVVVWNSIISAFVRSGQVV 270
++++ + +L + + C C V Q+ RDVV W +IIS G
Sbjct: 266 AQIIKNCSQSNEYLGSTLVWFYCKCGESRTASKVLQQMPFRDVVSWTAIISGHACLGHES 325
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALI 319
+AL+ L++++ V+PN+ T S L AC L + QG + FV +ALI
Sbjct: 326 EALEFLKEMMEEGVEPNSFTYSSALKACANLETVLQGKLIHSSANKTPASSNVFVGSALI 385
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
MY RCG + ++ ++F MP +NLV+W MI Y
Sbjct: 386 HMYARCGYVSEAIQVFDSMPERNLVTWRAMIMGY 419
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 59/344 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH--FVCPKVYKACSELKDYRVGKDVYD 89
+WT+M+ Y G +E ++ F I GV P+ FVC V CS D+ +G+ V+
Sbjct: 8 SWTAMINGYFKFGLDDEALSYFSQAIKDGVVPNSKTFVC--VLNLCSRRLDFELGRQVHA 65
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
++ +GN ++ +V+++++ FY +C LK +
Sbjct: 66 RVV----KGNW---------------------------RNLIVDSAVVYFYVQCGDLKSA 94
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
C F ++ ++D+VSW M+ + G E + +M+ PN + SG+L AC
Sbjct: 95 FCVFDRMVERDVVSWTTMITACSQQGRCGEAFGMF--TQMLNGGFLPNGFTASGILKACG 152
Query: 210 QVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ K +K GK IHG +++ + + CG V S VFN + R+ V W S
Sbjct: 153 EEKALKFGKQIHGAIVKKMYKDDVFVGTSLVDMYAKCGEVSDSSKVFNGMRRRNTVTWTS 212
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL---------- 308
II+ + R G +A+ L R ++ V N +TIVS+L AC + AL G
Sbjct: 213 IIAGYARKGLGEEAICLFRLMMRRRVVSNNLTIVSMLRACGLIGALLAGREVHAQIIKNC 272
Query: 309 -GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ ++ + L+ Y +CG + + K+ MP +++VSW +IS
Sbjct: 273 SQSNEYLGSTLVWFYCKCGESRTASKVLQQMPFRDVVSWTAIIS 316
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/330 (22%), Positives = 141/330 (42%), Gaps = 64/330 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++ G Q+H ++ + F+G+ L++++ WTS++
Sbjct: 157 LKFGKQIHGAIVKKMYKDDVFVGTSLVDMYAKCGEVSDSSKVFNGMRRRNTVTWTSIIAG 216
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G EE + LF LM+ + V ++ + +AC + G++V+ +I + N
Sbjct: 217 YARKGLGEEAICLFRLMMRRRVVSNNLTIVSMLRACGLIGALLAGREVHAQIIKNCSQSN 276
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ L+ + KCG S + ++ + +
Sbjct: 277 EYLGSTLVWFYCKCGESRTASKVLQQ------------------------------MPFR 306
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSW A+++G+A G E L EM ++ ++PN+ + S L ACA ++ V GK
Sbjct: 307 DVVSWTAIISGHACLGHESEALEFLKEM--MEEGVEPNSFTYSSALKACANLETVLQGKL 364
Query: 220 IHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH +V IH+ CG+V + VF+ + R++V W ++I +VR+G
Sbjct: 365 IHSSANKTPASSNVFVGSALIHMYARCGYVSEAIQVFDSMPERNLVTWRAMIMGYVRNGL 424
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+AL L+ + ++ + VL AC
Sbjct: 425 CQEALKLMYRMQAEGIQVDDYISAKVLGAC 454
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 106/219 (48%), Gaps = 23/219 (10%)
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
+ ++++VSW AM+ GY G +E + + I+ + PN+ + VL C++ +
Sbjct: 1 MPERNVVSWTAMINGYFKFGLDDEALSYFS--QAIKDGVVPNSKTFVCVLNLCSRRLDFE 58
Query: 216 LGKAIHGYVLRHH----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVR 265
LG+ +H V++ + ++ CG + + VF+++ RDVV W ++I+A +
Sbjct: 59 LGRQVHARVVKGNWRNLIVDSAVVYFYVQCGDLKSAFCVFDRMVERDVVSWTTMITACSQ 118
Query: 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFV 314
G+ +A + ++ PN T +L AC + AL G FV
Sbjct: 119 QGRCGEAFGMFTQMLNGGFLPNGFTASGILKACGEEKALKFGKQIHGAIVKKMYKDDVFV 178
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+L+DMY +CG + S K+F M +N V+W +I+ Y
Sbjct: 179 GTSLVDMYAKCGEVSDSSKVFNGMRRRNTVTWTSIIAGY 217
>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
Length = 869
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/365 (27%), Positives = 166/365 (45%), Gaps = 72/365 (19%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M+ + G E + + Y M+ +GVRPD ACS+L+ +G++++ Y+
Sbjct: 238 TWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYV 297
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ ++ + V ++L+D YA + V+
Sbjct: 298 LKDS-----------------------------DLAANSFVASALVDMYASHERVGVARR 328
Query: 152 KFSKIK--QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + + L WNAM+ GYA G EE L ME + + P+ +++GVL ACA
Sbjct: 329 VFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARME-AEAGVVPSETTIAGVLPACA 387
Query: 210 QVKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ + +A+HGYVL+ + L G + + +F + RDVV WN+
Sbjct: 388 RSETFAGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNT 447
Query: 259 IISAFVRSGQVVDALDLLR--------------DVIVAN----VKPNTVTIVSVLPACLK 300
+I+ V G + DA L+R D I V PN VT++++LP C
Sbjct: 448 LITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAM 507
Query: 301 LAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
LAA +G L + V +AL+DMY +CG + SR +F +P +N+++WNV+
Sbjct: 508 LAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVL 567
Query: 350 ISVYG 354
I YG
Sbjct: 568 IMAYG 572
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 149/324 (45%), Gaps = 63/324 (19%)
Query: 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLF 123
DHF P K+ + L+ +I+++ A ++R LL F
Sbjct: 58 DHFALPPAAKSAAALRS----------LIAVRSIHGAALRRDLLHGFTPA---------- 97
Query: 124 EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNL 183
V N+L+ YA+C L + F+ + +D V++N+++A L FR + L
Sbjct: 98 --------VANALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIAALCL--FRRWLPAL 147
Query: 184 LDEMEMIQTDMQPNTISLSGVLAACAQV-KGVKLGKAIHGYVLRHH-------------I 229
+M+ ++ +L VL AC+ + + ++LG+ H + L++ +
Sbjct: 148 DALRDMLLEGHPLSSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALL 207
Query: 230 HLSTACGFVICSCSVFNQLSTRD-----VVVWNSIISAFVRSGQVVDALDLLRDVIVANV 284
+ G V + +F + T D VV WN+++S V+SG+ +A++++ D++ V
Sbjct: 208 SMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGV 267
Query: 285 KPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNALIDMYGRCGAIQKSR 332
+P+ +T S LPAC +L L G L SFV +AL+DMY + +R
Sbjct: 268 RPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVAR 327
Query: 333 KIFVLMP--HKNLVSWNVMISVYG 354
++F ++P H+ L WN M+ Y
Sbjct: 328 RVFDMVPGGHRQLGLWNAMVCGYA 351
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 154/358 (43%), Gaps = 73/358 (20%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M+ Y G EE + LF M + GV P V AC+ + + + V+ Y+
Sbjct: 343 WNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYV 402
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ KR + D + V N+L+D YA+ ++ +
Sbjct: 403 L----------KRGMAD--------------------NPFVQNALMDLYARLGDMEAARW 432
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME-------------MIQTDMQP-- 196
F+ I+ +D+VSWN ++ G + G + L+ EM+ + TD +P
Sbjct: 433 IFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVV 492
Query: 197 -NTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACG------FVICSC-----SV 244
N ++L +L CA + GK IHGY +RH + A G + C C +V
Sbjct: 493 PNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAV 552
Query: 245 FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPACLKLAA 303
F++L R+V+ WN +I A+ G +A+ L ++++N KPN VT ++ L AC
Sbjct: 553 FDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGM 612
Query: 304 LPQGL------------GTGSFVWNALIDMYGRCGAIQKSRKIFVLM-PHKNLVS-WN 347
+ +G+ + +D+ GR G + ++ I M P + VS W+
Sbjct: 613 VDRGMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWS 670
>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 95/404 (23%), Positives = 184/404 (45%), Gaps = 54/404 (13%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ +G QVHA + ++GS L++++ W S++
Sbjct: 163 LNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITC 222
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI-KFEG 98
Y G E + +F M+D G+ PD V AC+ L + G ++ ++ KF
Sbjct: 223 YEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRD 282
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
+ + L+D++ KC ++ +F+ M ++ + S++ YA+ +K + FSK+
Sbjct: 283 DLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMT 342
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
Q+++VSWNA++AGY G EE L ++ + + P + +L+ACA + + LG
Sbjct: 343 QRNVVSWNALIAGYTQNGENEEALRLFRLLK--RESIWPTHYTFGNLLSACANLADLLLG 400
Query: 218 KAIHGYVLRHHIHLSTA-----------------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ H +VL+ + CG + VF ++ RD V WN+II
Sbjct: 401 RQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAII 460
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTGSFV 314
+ ++G +AL + R ++V KP+ VT++ VL AC + +G + +
Sbjct: 461 VGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGLI 520
Query: 315 -----WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ ++D+ GR G + +++ + MP + + V W +++
Sbjct: 521 PLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAA 564
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 157/316 (49%), Gaps = 26/316 (8%)
Query: 63 PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGL 122
P+ K+ +C + R + V+ ++ +F ++ L+D++ KC ++ L
Sbjct: 13 PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKL 72
Query: 123 FEEMDQ-DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVT 181
F+ M Q + NSLI K +L + F + + D SWN+M++G+A EE
Sbjct: 73 FDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESL 132
Query: 182 NLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IH 230
++M + D N S L+ACA + + +G +H V + I
Sbjct: 133 EYF--VKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALID 190
Query: 231 LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
+ + CG V C+ VF+ + R++V WNS+I+ + ++G +AL++ ++ + ++P+ VT
Sbjct: 191 MYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVT 250
Query: 291 IVSVLPACLKLAALPQGL-------GTGSF-----VWNALIDMYGRCGAIQKSRKIFVLM 338
+ SV+ AC L AL +GL T F + NAL+DMY +C + ++R++F M
Sbjct: 251 LASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRM 310
Query: 339 PHKNLVSWNVMISVYG 354
+N+VS M+S Y
Sbjct: 311 SIRNVVSETSMVSGYA 326
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 92/398 (23%), Positives = 165/398 (41%), Gaps = 92/398 (23%)
Query: 17 ELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACS 76
E GS C+W SM+ + +EE + F M + + + AC+
Sbjct: 99 EAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACA 158
Query: 77 ELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSL 136
L D +G V+ + ++ D + ++L
Sbjct: 159 GLMDLNMGTQVHALVSKSRY------------------------------STDVYMGSAL 188
Query: 137 IDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP 196
ID Y+KC + + FS + +++LV+WN+++ Y G E + + M+ + ++P
Sbjct: 189 IDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVF--VRMMDSGLEP 246
Query: 197 NTISLSGVLAACAQVKGVKLGKAIHGYVL-----RHHIHLSTACGFVICSCS-------- 243
+ ++L+ V++ACA + +K G IH V+ R + L A + CS
Sbjct: 247 DEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRV 306
Query: 244 ------------------------------VFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
+F++++ R+VV WN++I+ + ++G+ +AL
Sbjct: 307 FDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEAL 366
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGS------FVWN 316
L R + ++ P T ++L AC LA L QG S FV N
Sbjct: 367 RLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGN 426
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+LIDMY +CG+I+ ++F M ++ VSWN +I Y
Sbjct: 427 SLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYA 464
>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 695
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/366 (27%), Positives = 179/366 (48%), Gaps = 62/366 (16%)
Query: 47 EEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPL 106
+E + LF M +G P + + A ++L D R GK ++ +I F GN + L
Sbjct: 137 QESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNAL 196
Query: 107 LDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAK----------------------- 142
D++ KCG +E LF+ + + LV+ N +I YAK
Sbjct: 197 TDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQ 256
Query: 143 ----------CRYLKVSHCK--FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
C+ +V + FS+ K+KD+V W AM+ GYA G E+ L +EM +
Sbjct: 257 VTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEM--L 314
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVI 239
++P++ +LS V+++CA++ + G+A+HG L +++ +S+A CGF+
Sbjct: 315 LEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFID 374
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ SVFN + TR+VV WN++I ++G DAL+L +++ KP+ VT + +L ACL
Sbjct: 375 DARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACL 434
Query: 300 KLAALPQGLGTGSFVWNA------------LIDMYGRCGAIQKSRKIFVLMPHK-NLVSW 346
+ QG + N ++++ GR G I+++ + M H + + W
Sbjct: 435 HCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIW 494
Query: 347 NVMISV 352
+ ++S+
Sbjct: 495 STLLSI 500
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 122/261 (46%), Gaps = 38/261 (14%)
Query: 106 LLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
LL L+ K G++ LF++M +D N+L+ YAK ++ F ++ +D VS+
Sbjct: 64 LLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSY 123
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
N +AG++ +E L M+ + +P ++ +L A AQ+ ++ GK IHG +
Sbjct: 124 NTTIAGFSGNSCPQESLELFKRMQ--REGFEPTEYTIVSILNASAQLSDLRYGKQIHGSI 181
Query: 225 LRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
+ + + CG + + +F+ L+ +++V WN +IS + ++GQ +
Sbjct: 182 IVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCI 241
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRK 333
LL + ++ P+ VT+ +++ A Y +CG + ++R+
Sbjct: 242 GLLHQMRLSGHMPDQVTMSTIIAA------------------------YCQCGRVDEARR 277
Query: 334 IFVLMPHKNLVSWNVMISVYG 354
+F K++V W M+ Y
Sbjct: 278 VFSEFKEKDIVCWTAMMVGYA 298
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 120/263 (45%), Gaps = 50/263 (19%)
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
R +DL C R TS + ++ + + N + + + L+ SH + + D
Sbjct: 8 RQSVDLL--CSRSTATSEAYTQLVLECVRTNEI----NQAKRLQ-SHMEHHLFQPTDSFL 60
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
N +L YA G + NL D+M ++ + S + +L+A A+ ++ KA
Sbjct: 61 HNQLLHLYAKFGKLRDAQNLFDKM------LKRDIFSWNALLSAYAKSGSIQNLKA---- 110
Query: 224 VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283
F+++ RD V +N+ I+ F + ++L+L + +
Sbjct: 111 --------------------TFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREG 150
Query: 284 VKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNALIDMYGRCGAIQKS 331
+P TIVS+L A +L+ L G LG F+WNAL DMY +CG I+++
Sbjct: 151 FEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGN-VFIWNALTDMYAKCGEIEQA 209
Query: 332 RKIFVLMPHKNLVSWNVMISVYG 354
R +F + KNLVSWN+MIS Y
Sbjct: 210 RWLFDCLTKKNLVSWNLMISGYA 232
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 105/253 (41%), Gaps = 45/253 (17%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT+MM Y G E+ + LF M+ + + PD + V +C++L G+ V+ I
Sbjct: 290 WTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSI 349
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
N V L+D++ KCG ++ +F M
Sbjct: 350 LAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLM-------------------------- 383
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
+++VSWNAM+ G A G ++ L + M+Q +P+ ++ G+L+AC
Sbjct: 384 ----PTRNVVSWNAMIVGCAQNGHDKDALELFE--NMLQQKFKPDNVTFIGILSACLHCN 437
Query: 213 GVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVF-NQLSTRDVVVWNSI 259
++ G+ + H ++L G + + ++ N D ++W+++
Sbjct: 438 WIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTL 497
Query: 260 ISAFVRSGQVVDA 272
+S G +V+A
Sbjct: 498 LSICSTKGDIVNA 510
>gi|255583926|ref|XP_002532711.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527557|gb|EEF29678.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 679
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/358 (27%), Positives = 168/358 (46%), Gaps = 74/358 (20%)
Query: 31 CNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W + + E ++ + MI GV PD + P V KA + L+D +GK ++ +
Sbjct: 43 ASWIESLRFNTRSNLFREAISTYVDMILSGVSPDSYAFPVVLKAVTGLQDLNLGKQIHAH 102
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
++ +E ++ + NSL++FY KC L +
Sbjct: 103 VVKYGYESSSVA-----------------------------IANSLVNFYGKCSELDDVY 133
Query: 151 CKFSKIKQKDLVSWNAMLAGY--------ALGGFREEVTNLLDEMEMIQTDMQPNTISLS 202
F +I ++DLVSWN++++ + AL FR M+ D++P++ +L
Sbjct: 134 KVFDRINERDLVSWNSLISAFCRAQEWELALEAFRF----------MLAEDLEPSSFTLV 183
Query: 203 GVLAACAQVK---GVKLGKAIHGYVLRHHIHLSTACGFVICSCS-----------VFNQL 248
+ AC+ ++ G++LGK IHGY R+ H ST + + +F
Sbjct: 184 SPVIACSNLRKHEGLRLGKQIHGYCFRNG-HWSTFTNNALMTMYANLGRLDDAKFLFKLF 242
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG- 307
R+++ WN++IS+F ++ + V+AL LR +++ VKP+ VT+ SVLPAC L L G
Sbjct: 243 EDRNLISWNTMISSFSQNERFVEALMSLRYMVLEGVKPDGVTLASVLPACSYLEMLGTGK 302
Query: 308 -----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L SFV +AL+DMY CG + R++F + + WN MI+ Y
Sbjct: 303 EIHAYALRSGDLIENSFVGSALVDMYCNCGQVGSGRRVFDGILERKTGLWNAMIAGYA 360
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 106/410 (25%), Positives = 184/410 (44%), Gaps = 87/410 (21%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+ LG Q+H + G F + L+ ++ N W +M+
Sbjct: 198 LRLGKQIHGYCFRNG-HWSTFTNNALMTMYANLGRLDDAKFLFKLFEDRNLISWNTMISS 256
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
++ + E + M+ +GV+PD V ACS L+ GK+++ Y +
Sbjct: 257 FSQNERFVEALMSLRYMVLEGVKPDGVTLASVLPACSYLEMLGTGKEIHAYALR------ 310
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
SG ++ ++ V ++L+D Y C + F I ++
Sbjct: 311 --------------------SG---DLIENSFVGSALVDMYCNCGQVGSGRRVFDGILER 347
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
WNAM+AGYA E+ L EM + + PNT +++ ++ A A+ + ++
Sbjct: 348 KTGLWNAMIAGYAQNEHDEKALMLFIEMVAV-AGLCPNTTTMASIVPASARCESFFSKES 406
Query: 220 IHGYVLRHHIHLSTACGFVI-----------CSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IHGYV++ + + S ++F+ + RD+V WN++I+ +V SG
Sbjct: 407 IHGYVIKRDLERDRYVQNALMDMYSRMRKMEISKTIFDSMEVRDIVSWNTMITGYVISGC 466
Query: 269 VVDALDLLRDVIVAN-------------VKPNTVTIVSVLPACLKLAALPQG-------- 307
DAL +L ++ AN KPN++T+++VLP C LAAL +G
Sbjct: 467 YNDALLMLHEMQHANEGINKHDGDKQACFKPNSITLMTVLPGCASLAALAKGKEIHAYAV 526
Query: 308 ---LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L + V +AL+DMY +CG + SR++F MP KN+++WNV++ YG
Sbjct: 527 RNALASEVTVGSALVDMYAKCGCLNLSRRVFDQMPIKNVITWNVIVMAYG 576
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/398 (23%), Positives = 176/398 (44%), Gaps = 92/398 (23%)
Query: 4 GIQVHAHLIVCGVEL-CAFLGSQLLEVFCN---------------------WTSMMGMYN 41
G ++HA+ + G + +F+GS L++++CN W +M+ Y
Sbjct: 301 GKEIHAYALRSGDLIENSFVGSALVDMYCNCGQVGSGRRVFDGILERKTGLWNAMIAGYA 360
Query: 42 VLGYYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+ E+ + LF M+ G+ P+ + A + + + + ++ Y+I
Sbjct: 361 QNEHDEKALMLFIEMVAVAGLCPNTTTMASIVPASARCESFFSKESIHGYVI-------- 412
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
KR ++++D V N+L+D Y++ R +++S F ++ +D
Sbjct: 413 --KR--------------------DLERDRYVQNALMDMYSRMRKMEISKTIFDSMEVRD 450
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMI-----------QTDMQPNTISLSGVLAACA 209
+VSWN M+ GY + G + +L EM+ Q +PN+I+L VL CA
Sbjct: 451 IVSWNTMITGYVISGCYNDALLMLHEMQHANEGINKHDGDKQACFKPNSITLMTVLPGCA 510
Query: 210 QVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ + GK IH Y +R+ + + CG + S VF+Q+ ++V+ WN
Sbjct: 511 SLAALAKGKEIHAYAVRNALASEVTVGSALVDMYAKCGCLNLSRRVFDQMPIKNVITWNV 570
Query: 259 IISAFVRSGQVVDALDLLRDVI-----VANVKPNTVTIVSVLPACLKLAALPQGLG---- 309
I+ A+ G +AL+L +D++ V VKP VT++++L AC + +GL
Sbjct: 571 IVMAYGMHGNGEEALELFKDMVAKGDNVGEVKPTEVTMIAILAACSHSGMVDEGLKLFHR 630
Query: 310 --------TGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
G + + D+ GR G ++++ MP
Sbjct: 631 MKDDHGIEPGPDHYACVADLLGRAGKVEQAYDFINTMP 668
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/402 (24%), Positives = 176/402 (43%), Gaps = 82/402 (20%)
Query: 1 MELGIQVHAHLIVCGVE---------LCAFLG--SQLLEVF-----------CNWTSMMG 38
+ LG Q+HAH++ G E L F G S+L +V+ +W S++
Sbjct: 93 LNLGKQIHAHVVKYGYESSSVAIANSLVNFYGKCSELDDVYKVFDRINERDLVSWNSLIS 152
Query: 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY---RVGKDVYDYMISIK 95
+ +E + F M+ + + P F ACS L+ + R+GK ++ Y
Sbjct: 153 AFCRAQEWELALEAFRFMLAEDLEPSSFTLVSPVIACSNLRKHEGLRLGKQIHGY----- 207
Query: 96 FEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSK 155
C + F NN+L+ YA L + F
Sbjct: 208 -----CFRNGHWSTF---------------------TNNALMTMYANLGRLDDAKFLFKL 241
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
+ ++L+SWN M++ ++ V L+ M+ ++P+ ++L+ VL AC+ ++ +
Sbjct: 242 FEDRNLISWNTMISSFSQN--ERFVEALMSLRYMVLEGVKPDGVTLASVLPACSYLEMLG 299
Query: 216 LGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAF 263
GK IH Y LR + + CG V VF+ + R +WN++I+ +
Sbjct: 300 TGKEIHAYALRSGDLIENSFVGSALVDMYCNCGQVGSGRRVFDGILERKTGLWNAMIAGY 359
Query: 264 VRSGQVVDALDLLRDVI-VANVKPNTVTIVSVLPACLKLAA-----------LPQGLGTG 311
++ AL L +++ VA + PNT T+ S++PA + + + + L
Sbjct: 360 AQNEHDEKALMLFIEMVAVAGLCPNTTTMASIVPASARCESFFSKESIHGYVIKRDLERD 419
Query: 312 SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+V NAL+DMY R ++ S+ IF M +++VSWN MI+ Y
Sbjct: 420 RYVQNALMDMYSRMRKMEISKTIFDSMEVRDIVSWNTMITGY 461
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 12/116 (10%)
Query: 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL- 308
+R W + RS +A+ D+I++ V P++ VL A L L G
Sbjct: 39 SRSQASWIESLRFNTRSNLFREAISTYVDMILSGVSPDSYAFPVVLKAVTGLQDLNLGKQ 98
Query: 309 -----------GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ + N+L++ YG+C + K+F + ++LVSWN +IS +
Sbjct: 99 IHAHVVKYGYESSSVAIANSLVNFYGKCSELDDVYKVFDRINERDLVSWNSLISAF 154
>gi|326527617|dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 642
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 168/328 (51%), Gaps = 26/328 (7%)
Query: 46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP 105
+ +++ F M KG P V+K+C+ G+ V+ + + G+ V
Sbjct: 100 HHDLLQTFSSMHRKGAYVPSGCVPLVFKSCALTASSCQGRQVHCHALVRGLLGDVFVLTA 159
Query: 106 LLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
L+D + K G ME +F+EM +D + N LI Y+K + + F ++++ SW
Sbjct: 160 LVDFYAKNGDMESAVSVFDEMPVKDPIPINCLITGYSKAGDVDKARRLFDGMERRTSASW 219
Query: 165 NAMLAGYALGG-FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
N+M+A YA GG FRE +T L D M + +PN I+++ V + CA+ + GK +
Sbjct: 220 NSMIACYAHGGEFREALT-LFDRM--LSEGARPNAITITSVFSICAKSGDLDTGKRVRDL 276
Query: 224 VLRHH-----IHLSTACGFVICSC-----SVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
+ +H + +V C F+++S RDVV W+++I+ + ++G+ +++L
Sbjct: 277 IGEDDLQNVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESL 336
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMY 322
+L + + +PN VT+V V+ AC +L A Q L S++ +ALIDMY
Sbjct: 337 ELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQRLPLTSYLGSALIDMY 396
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
RCG + ++R +F M K +++WN MI
Sbjct: 397 TRCGHVGRARSVFSRMEQKGVITWNSMI 424
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 138/290 (47%), Gaps = 46/290 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y G + E + LF M+ +G RP+ V+ C++ D GK V D
Sbjct: 218 SWNSMIACYAHGGEFREALTLFDRMLSEGARPNAITITSVFSICAKSGDLDTGKRVRD-- 275
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSH 150
L E D Q+ +V+ +L++ Y KCR + +
Sbjct: 276 ------------------------------LIGEDDLQNVIVHTALMEMYVKCRAIDDAR 305
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+F ++ Q+D+V+W+ M+AGYA G E L + M+ TD +PN ++L GV++ACAQ
Sbjct: 306 REFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKA--TDCRPNEVTLVGVISACAQ 363
Query: 211 VKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSI 259
+ +L + I Y + L+ T CG V + SVF+++ + V+ WNS+
Sbjct: 364 LGSDELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITWNSM 423
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG 309
I +G DA+ L + V+PN +T V++L AC + QG+
Sbjct: 424 IRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMA 473
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 138/321 (42%), Gaps = 64/321 (19%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W++M+ Y G E + LF M RP+ V AC++L G D I
Sbjct: 319 WSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQL-----GSDELVEQI 373
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
GN + + R+ +TS L ++LID Y +C ++ +
Sbjct: 374 -----GN----------YAENQRLPLTSYL----------GSALIDMYTRCGHVGRARSV 408
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
FS+++QK +++WN+M+ G A+ GF E+ +L ++M + +QPN I+ +LAAC
Sbjct: 409 FSRMEQKGVITWNSMIRGLAMNGFAEDAISLYEKM--AENGVQPNEITFVALLAACTHAG 466
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
V G A + R H+ + C+C I+ +SG + +A
Sbjct: 467 LVDQGMAFFEEMKREHL---VSPQVEHCAC----------------IVDLLCKSGGLWEA 507
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPAC-----LKLAALPQGL-----GTGSFVWNALIDMY 322
+ D+ V+PN V ++L +C ++LA L S ++ L ++Y
Sbjct: 508 YKFICDM---EVEPNAVIWTTLLSSCRAHADVELAKLASRKLLAMEPDNSSIYVLLSNIY 564
Query: 323 GRCGAIQKSRKIFVLMPHKNL 343
G +R+I LM KN+
Sbjct: 565 ADAGLWGDAREIRDLMRSKNV 585
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 10/121 (8%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
+F+ + R WNS+I+ + G+ +AL L ++ +PN +TI SV C K
Sbjct: 207 LFDGMERRTSASWNSMIACYAHGGEFREALTLFDRMLSEGARPNAITITSVFSICAKSGD 266
Query: 304 LPQG------LGTGSF----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L G +G V AL++MY +C AI +R+ F M +++V+W+ MI+ Y
Sbjct: 267 LDTGKRVRDLIGEDDLQNVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGY 326
Query: 354 G 354
Sbjct: 327 A 327
>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
Length = 648
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/348 (24%), Positives = 175/348 (50%), Gaps = 35/348 (10%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKG--VRPDHFVCPKVYKACSELKDYRVGKDVYD 89
+W +++G Y G E + LF+ + + G VRPD C+++ D +GK +++
Sbjct: 189 SWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHE 248
Query: 90 YMISIKFEGNACVKR---PLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRY 145
+ + +G C R ++D+++KCG +E+ + +FE + V+ ++I +A+
Sbjct: 249 F---VDNKGVRCTVRLMNAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVGHARLGM 305
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
++ + F ++ ++D+ WNA++AGY +E L EM+ + D PN I++ +L
Sbjct: 306 MEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVD--PNEITMVNLL 363
Query: 206 AACAQVKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVV 254
+AC+Q+ +++G +H Y+ RH +HLS A CG + + VFN++ ++ +
Sbjct: 364 SACSQLGALEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQNAL 423
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV 314
W S+I G +A++ + +I ++P+ +T + VL AC + G S +
Sbjct: 424 TWTSMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVEAGRQFFSLM 483
Query: 315 ------------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVM 349
++ +ID+ GR G + ++ ++ MP + V W +
Sbjct: 484 HAKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNAMPMDPDAVVWGAL 531
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/349 (24%), Positives = 150/349 (42%), Gaps = 83/349 (23%)
Query: 55 LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG 114
L+ RPDH P + KAC+ L+ G V ++ + F + V + + G
Sbjct: 111 LLHSGSARPDHLTFPFLIKACARLQYRSYGAAVLGHVQKLGFSADVFVVNAAMHFWSVRG 170
Query: 115 RMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALG 174
M LF+E S ++ D+VSWN ++ GY
Sbjct: 171 PMAFARRLFDE----------------------------SPVR--DVVSWNTLIGGYVRS 200
Query: 175 GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIH 230
G E L + ++P+ +++ G ++ CAQ+ ++LGK +H +V +R +
Sbjct: 201 GLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVR 260
Query: 231 LSTA-------CGFVICSCSVFNQLST-------------------------------RD 252
L A CG + + SVF ++S RD
Sbjct: 261 LMNAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERD 320
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS 312
V WN++++ +V++ Q +A+ L ++ + V PN +T+V++L AC +L AL G+
Sbjct: 321 VFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHH 380
Query: 313 FV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
++ +L+DMY +CG I+K+ +F +P +N ++W MI
Sbjct: 381 YIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMI 429
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/315 (23%), Positives = 125/315 (39%), Gaps = 58/315 (18%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W ++M Y +E + LF+ M V P+ + ACS+L +G V+ Y
Sbjct: 324 WNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHY-- 381
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ R L L + G SL+D YAKC +K + C
Sbjct: 382 ---------IDRHKLHLSVALG-------------------TSLVDMYAKCGNIKKAICV 413
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F++I ++ ++W +M+ G A G +E M I +QP+ I+ GVL+AC
Sbjct: 414 FNEIPVQNALTWTSMICGLANHGHADEAIEYFQRM--IDLGLQPDEITFIGVLSACCHAG 471
Query: 213 GVKLGKAIHGYVLRH-HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V+ G+ + L H HL C + + D + Q+V+
Sbjct: 472 LVEAGRQF--FSLMHAKYHLERKMKHYSCMIDLLGRAGHLD------------EAEQLVN 517
Query: 272 ALDLLRDVIV------ANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRC 325
A+ + D +V A +T+ A +KL L + S ++ L +MY
Sbjct: 518 AMPMDPDAVVWGALFFACRMHGNITLGE--KAAMKLVELDP---SDSGIYVLLANMYAEA 572
Query: 326 GAIQKSRKIFVLMPH 340
+K+ K+ V+M H
Sbjct: 573 NMRKKADKVRVMMRH 587
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 37/173 (21%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMM-G 38
+E+G+ VH ++ + L LG+ L++++ WTSM+ G
Sbjct: 372 LEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMICG 431
Query: 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD-----YMIS 93
+ N G+ +E + F MID G++PD V AC G+ + Y +
Sbjct: 432 LAN-HGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVEAGRQFFSLMHAKYHLE 490
Query: 94 IKFEGNACVKRPLLDLFIKCGRMEITSGLFE--EMDQDFLVNNSLIDFYAKCR 144
K + +C ++DL + G ++ L MD D +V +L F+A CR
Sbjct: 491 RKMKHYSC----MIDLLGRAGHLDEAEQLVNAMPMDPDAVVWGAL--FFA-CR 536
>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 608
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 133/249 (53%), Gaps = 23/249 (9%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
+ D +SLI Y++C + + F +I ++DLVSWN+M+AGYA G E +
Sbjct: 147 LHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGCAREAVEVFG 206
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-----------A 234
EM + +P+ +SL VL AC ++ ++LG+ + G+V+ + L++
Sbjct: 207 EMGR-RDGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAK 265
Query: 235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV 294
CG + + +F+ ++ RDV+ WN++IS + ++G +A+ L + V N +T+ +V
Sbjct: 266 CGDLGSARRIFDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKEDCVTENKITLTAV 325
Query: 295 LPACLKLAAL-----------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
L AC + AL +G FV ALIDMY +CG++ ++++F MP KN
Sbjct: 326 LSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQRVFKEMPQKNE 385
Query: 344 VSWNVMISV 352
SWN MIS
Sbjct: 386 ASWNAMISA 394
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/336 (25%), Positives = 146/336 (43%), Gaps = 58/336 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-GVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W SM+ Y G E V +F M + G PD V AC EL D +G+ V +
Sbjct: 184 SWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWVEGF 243
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
++ M + + ++LI YAKC L +
Sbjct: 244 VVE------------------------------RGMTLNSYIGSALISMYAKCGDLGSAR 273
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + +D+++WNA+++GYA G +E +L M+ + + N I+L+ VL+ACA
Sbjct: 274 RIFDGMAARDVITWNAVISGYAQNGMADEAISLFHAMK--EDCVTENKITLTAVLSACAT 331
Query: 211 VKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ + LGK I Y +H I ++TA CG + + VF ++ ++ WN++
Sbjct: 332 IGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQRVFKEMPQKNEASWNAM 391
Query: 260 ISAFVRSGQVVDALDLLR--DVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV--- 314
ISA G+ +AL L + +PN +T V +L AC+ + +G +
Sbjct: 392 ISALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSACVHAGLVNEGYRLFDMMSTL 451
Query: 315 ---------WNALIDMYGRCGAIQKSRKIFVLMPHK 341
++ ++D+ R G + ++ + MP K
Sbjct: 452 FGLVPKIEHYSCMVDLLARAGHLYEAWDLIEKMPEK 487
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 93/171 (54%), Gaps = 23/171 (13%)
Query: 207 ACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVV 255
+CA + + +A H V + +H + + CG V + VF+++ RD+V
Sbjct: 125 SCANLAVLSPARAAHSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRDLVS 184
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPACLKLAALP--------- 305
WNS+I+ + ++G +A+++ ++ + +P+ +++VSVL AC +L L
Sbjct: 185 WNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWVEGFV 244
Query: 306 --QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+G+ S++ +ALI MY +CG + +R+IF M +++++WN +IS Y
Sbjct: 245 VERGMTLNSYIGSALISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYA 295
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 128/319 (40%), Gaps = 73/319 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ELG V ++ G+ L +++GS L+ ++ W +++
Sbjct: 234 LELGRWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSARRIFDGMAARDVITWNAVISG 293
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G +E ++LF+ M + V + V AC+ + +GK + +Y F+
Sbjct: 294 YAQNGMADEAISLFHAMKEDCVTENKITLTAVLSACATIGALDLGKQIDEYASQRGFQ-- 351
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D V +LID YAKC L + F ++ QK
Sbjct: 352 ----------------------------HDIFVATALIDMYAKCGSLASAQRVFKEMPQK 383
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+ SWNAM++ A G +E +L M +PN I+ G+L+AC V G
Sbjct: 384 NEASWNAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSAC-----VHAGLV 438
Query: 220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
GY R +ST G V + ++ ++ R+G + +A DL+ +
Sbjct: 439 NEGY--RLFDMMSTLFGLV------------PKIEHYSCMVDLLARAGHLYEAWDLIEKM 484
Query: 280 IVANVKPNTVTIVSVLPAC 298
KP+ VT+ ++L AC
Sbjct: 485 ---PEKPDKVTLGALLGAC 500
>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 926
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 96/345 (27%), Positives = 167/345 (48%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y G + + +F M+ GV D V+ AC+ + +GK ++ Y
Sbjct: 319 SWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYS 378
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I +D++ NN+L+D Y+KC L +
Sbjct: 379 IKAA-----------------------------TLDREVRFNNTLLDMYSKCGDLNSAIR 409
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +K +VSW +M+ GY G + L DEM+ + P+ +++ +L ACA
Sbjct: 410 VFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMK--SRGVVPDVYAVTSILNACAIN 467
Query: 212 KGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSII 260
+K GK +H Y+ +++ ++ CG + + VF+ + +DV+ WN++I
Sbjct: 468 GNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMI 527
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTG-- 311
+ ++ +AL L + + KP+ T+ +LPAC LAAL +G L G
Sbjct: 528 GGYTKNSLPNEALTLFAE-MQRESKPDGTTVACILPACASLAALDKGREIHGYALRNGYS 586
Query: 312 --SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+V NA++DMY +CG + +R +F ++P+K+LVSW VMI+ YG
Sbjct: 587 EDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYG 631
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 152/333 (45%), Gaps = 56/333 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ Y G + + LF M +GV PD + + AC+ + + GK V+DY+
Sbjct: 421 SWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYI 480
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
E N+ V+N+L D YAKC +K +H
Sbjct: 481 RENNLETNS------------------------------FVSNALTDMYAKCGSMKDAHD 510
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS +K+KD++SWN M+ GY E L EM Q + +P+ +++ +L ACA +
Sbjct: 511 VFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEM---QRESKPDGTTVACILPACASL 567
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ G+ IHGY LR+ + + CG ++ + S+F+ + +D+V W +I
Sbjct: 568 AALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMI 627
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
+ + G +A++ + + ++P+ V+ +S+L AC L +G + +
Sbjct: 628 AGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQI 687
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMPHK 341
+ ++D+ R G + K+ K MP K
Sbjct: 688 EPNLEHYACMVDLLARTGNLVKAHKFIKAMPIK 720
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 154/345 (44%), Gaps = 57/345 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W M+ Y+ G Y E +NLF M++ G++P+ + + K + + G+ V+ +
Sbjct: 219 WNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLIC 278
Query: 93 SIKFEG-NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F N V NSLI FY R ++ +
Sbjct: 279 KLGFNSYNTVV-------------------------------NSLISFYFVGRKVRCAQK 307
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +D++SWN+M++GY G + + +M + D+ T + V ACA +
Sbjct: 308 LFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLAT--MVNVFVACANI 365
Query: 212 KGVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ LGK +H Y ++ + + + CG + + VF ++ + VV W S+
Sbjct: 366 GTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSM 425
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------L 308
I+ +VR G A+ L ++ V P+ + S+L AC L G L
Sbjct: 426 ITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNL 485
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
T SFV NAL DMY +CG+++ + +F M K+++SWN MI Y
Sbjct: 486 ETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGY 530
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 124/248 (50%), Gaps = 25/248 (10%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D ++ L+ Y KC LK F K+ + + WN M++ Y+ G E NL +M
Sbjct: 184 DGILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQM- 242
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-----HHIHLSTACGF------ 237
++ ++PN+ + S +L A V V+ G+ +HG + + ++ +++ F
Sbjct: 243 -LELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRK 301
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
V C+ +F++L+ RDV+ WNS+IS +V++G +++ ++V V + T+V+V A
Sbjct: 302 VRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVA 361
Query: 298 CLKLAALPQGLGTGSFVW------------NALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
C + L G S+ N L+DMY +CG + + ++F M K +VS
Sbjct: 362 CANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVS 421
Query: 346 WNVMISVY 353
W MI+ Y
Sbjct: 422 WTSMITGY 429
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 97/199 (48%), Gaps = 24/199 (12%)
Query: 179 EVTNLLDEMEMIQTDMQPN--TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACG 236
EV +L + ME++ + N + +L CA+ K ++ G+ + + + + G
Sbjct: 129 EVGDLKNAMELLCSSQNSNFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILG 188
Query: 237 ----FVICSCS-------VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK 285
F+ C VF++LS + +WN +IS + SG ++++L + ++ +K
Sbjct: 189 VKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIK 248
Query: 286 PNTVTIVSVLPACLKLAALPQG---------LGTGSF--VWNALIDMYGRCGAIQKSRKI 334
PN+ T S+L +A + +G LG S+ V N+LI Y ++ ++K+
Sbjct: 249 PNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKL 308
Query: 335 FVLMPHKNLVSWNVMISVY 353
F + ++++SWN MIS Y
Sbjct: 309 FDELTDRDVISWNSMISGY 327
>gi|255578455|ref|XP_002530092.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530403|gb|EEF32291.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 718
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 105/395 (26%), Positives = 184/395 (46%), Gaps = 48/395 (12%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF------------------CN---WTSMMGM 39
+ L Q+H ++ CG LGS L++V+ CN W ++
Sbjct: 174 LSLSRQIHGLIVKCGFCGNVILGSALVDVYGKCKVMSEARLMFNEIENCNDVTWNVIVRR 233
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y +G E V +F+ M VRP +F ACS ++ G ++ + I IKFE +
Sbjct: 234 YLDVGNEREAVKMFFKMFQTDVRPLNFTFSNALIACSAMRALNEGMQIHAFAIKIKFEED 293
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
V L +++ KCG++E +F++ +D + S++ YA + + F K+ +
Sbjct: 294 EAVSSSLSNMYAKCGKLESARMIFDQHGSRDVISWTSMVSAYALSGRTREARELFEKMPE 353
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+VSWNAMLAGY EE + + M D+ + I+L +L CA + V++GK
Sbjct: 354 WSVVSWNAMLAGYIRSLQWEEALDFVCLMRRTTEDI--DHITLGLLLNVCAGISDVEMGK 411
Query: 219 AIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLS-TRDVVVWNSIISAFVRS 266
HG++ RH + + CG + + F Q+S +RD + WN++++++ R
Sbjct: 412 QAHGFIYRHGFSSCILVGNALLDMYGKCGNLRSARVWFYQMSQSRDNISWNALLTSYARH 471
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------VW 315
Q A+ + + + KP+T T ++L AC + AL QG F +
Sbjct: 472 HQSEQAMMIFGE-MQWETKPSTFTFGTLLAACANIFALDQGKEIHGFMIRNGYNLDTVIS 530
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
AL+DMY +C + + +F ++++ WN +I
Sbjct: 531 GALVDMYSKCRCLSYALTVFNRAGSRDVILWNSII 565
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 129/280 (46%), Gaps = 45/280 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y +EE ++ LM DH + C+ + D +GK + ++
Sbjct: 358 SWNAMLAGYIRSLQWEEALDFVCLMRRTTEDIDHITLGLLLNVCAGISDVEMGKQAHGFI 417
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F ++C+ LV N+L+D Y KC L+ +
Sbjct: 418 YRHGF--SSCI----------------------------LVGNALLDMYGKCGNLRSARV 447
Query: 152 KFSKIKQ-KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ Q +D +SWNA+L YA E+ + EM Q + +P+T + +LAACA
Sbjct: 448 WFYQMSQSRDNISWNALLTSYARHHQSEQAMMIFGEM---QWETKPSTFTFGTLLAACAN 504
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACG------FVICSC-----SVFNQLSTRDVVVWNSI 259
+ + GK IHG+++R+ +L T + C C +VFN+ +RDV++WNSI
Sbjct: 505 IFALDQGKEIHGFMIRNGYNLDTVISGALVDMYSKCRCLSYALTVFNRAGSRDVILWNSI 564
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
I +G+ + L L + VKP+ VT VL AC+
Sbjct: 565 ILGCCHNGRGKEVLKLFGQMEKEGVKPDHVTFHGVLLACM 604
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 82/377 (21%), Positives = 158/377 (41%), Gaps = 86/377 (22%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ Y GY E+ + LF M +GV + V K+CS++ D + + ++ +
Sbjct: 125 SWNAIIKAYTQCGYAEKALGLFKDMNKEGVFANEITFASVLKSCSDVLDLSLSRQIHGLI 184
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F GN + L+D+ Y KC+ + +
Sbjct: 185 VKCGFCGNVILGSALVDV------------------------------YGKCKVMSEARL 214
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F++I+ + V+WN ++ Y G E + +M QTD++P + S L AC+ +
Sbjct: 215 MFNEIENCNDVTWNVIVRRYLDVGNEREAVKMF--FKMFQTDVRPLNFTFSNALIACSAM 272
Query: 212 KGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ + G IH + ++ A CG + + +F+Q +RDV+ W S++
Sbjct: 273 RALNEGMQIHAFAIKIKFEEDEAVSSSLSNMYAKCGKLESARMIFDQHGSRDVISWTSMV 332
Query: 261 SAFVRSGQVVDALDLLRDV--------------------------IVANVKPNT-----V 289
SA+ SG+ +A +L + V ++ T +
Sbjct: 333 SAYALSGRTREARELFEKMPEWSVVSWNAMLAGYIRSLQWEEALDFVCLMRRTTEDIDHI 392
Query: 290 TIVSVLPACLKLAALPQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIFVLM 338
T+ +L C ++ + G F++ NAL+DMYG+CG ++ +R F M
Sbjct: 393 TLGLLLNVCAGISDVEMGKQAHGFIYRHGFSSCILVGNALLDMYGKCGNLRSARVWFYQM 452
Query: 339 PH-KNLVSWNVMISVYG 354
++ +SWN +++ Y
Sbjct: 453 SQSRDNISWNALLTSYA 469
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 139/295 (47%), Gaps = 35/295 (11%)
Query: 92 ISIKFEGNACVKRPLL-DLFIKCGRM-------EITSGL--FEEMDQDFLVNNSLIDFYA 141
+SI F N+ V L LF C +I S L F FL+N + I+ Y
Sbjct: 45 VSILFASNSSVPYSLYASLFQLCSSTLSIVEARKIESHLITFNPTPPIFLLNRA-IETYG 103
Query: 142 KCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISL 201
KC LK + F ++ Q+D SWNA++ Y G+ E+ L +M + + N I+
Sbjct: 104 KCECLKDARELFDEMPQRDGGSWNAIIKAYTQCGYAEKALGLFKDMN--KEGVFANEITF 161
Query: 202 SGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTACGFVICSCSV-------FNQLST 250
+ VL +C+ V + L + IHG +++ ++ L +A V C V FN++
Sbjct: 162 ASVLKSCSDVLDLSLSRQIHGLIVKCGFCGNVILGSALVDVYGKCKVMSEARLMFNEIEN 221
Query: 251 RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGT 310
+ V WN I+ ++ G +A+ + + +V+P T + L AC + AL +G+
Sbjct: 222 CNDVTWNVIVRRYLDVGNEREAVKMFFKMFQTDVRPLNFTFSNALIACSAMRALNEGMQI 281
Query: 311 GSF-----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+F V ++L +MY +CG ++ +R IF ++++SW M+S Y
Sbjct: 282 HAFAIKIKFEEDEAVSSSLSNMYAKCGKLESARMIFDQHGSRDVISWTSMVSAYA 336
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 98/239 (41%), Gaps = 55/239 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF----------------------CNWTSMMG 38
+E+G Q H + G C +G+ LL+++ +W +++
Sbjct: 407 VEMGKQAHGFIYRHGFSSCILVGNALLDMYGKCGNLRSARVWFYQMSQSRDNISWNALLT 466
Query: 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
Y E+ + +F M +P F + AC+ + GK+++ +MI +
Sbjct: 467 SYARHHQSEQAMMIFGEM-QWETKPSTFTFGTLLAACANIFALDQGKEIHGFMIRNGY-- 523
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
+ D +++ +L+D Y+KCR L + F++
Sbjct: 524 ----------------------------NLDTVISGALVDMYSKCRCLSYALTVFNRAGS 555
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+D++ WN+++ G G +EV L +ME + ++P+ ++ GVL AC VKL
Sbjct: 556 RDVILWNSIILGCCHNGRGKEVLKLFGQME--KEGVKPDHVTFHGVLLACMYEGHVKLA 612
>gi|297841915|ref|XP_002888839.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334680|gb|EFH65098.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 682
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 101/400 (25%), Positives = 184/400 (46%), Gaps = 51/400 (12%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G+Q+HAH + GVE + L +L+ + W ++ Y
Sbjct: 63 GLQIHAHCVSSGVEYHSALVPKLVTFYSAFNLHREAQSINENSDILHPLPWNVLIASYAK 122
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+EE+V + M+ KG+RPD F P V KAC E D G+ V+ + ++ + V
Sbjct: 123 NELFEEVVAAYKRMVSKGIRPDAFTYPSVLKACGETLDVASGRVVHGSIEVSSYKCSLYV 182
Query: 103 KRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK---- 157
L+ ++ + G + I LF+ M ++D + N++I+ YA + F K++
Sbjct: 183 CNALISMYKRFGNVGIARRLFDHMSERDAVSWNAVINCYASVGMWSEAFELFDKMRFSGV 242
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+ +++WN + GY G L+ M T + P + + L AC+ + ++LG
Sbjct: 243 EVSVITWNIISGGYLHTGNYVGALGLISRMRNFPTSLDPVAMIIG--LKACSLIGAIRLG 300
Query: 218 KAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
K IHG + I + + C + + VF + + WNSIIS + +
Sbjct: 301 KEIHGLAIHRSYDGIDNVRNTLITMYSKCDDLRNAFIVFQKTEENSLCTWNSIISGYAQV 360
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFV 314
+ +A LLR++++A +PN +T+ S+LP C ++A L G + +
Sbjct: 361 NKSEEASYLLREMLLAGFQPNFITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTML 420
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
WN+L+D+Y + G I ++++ LM + V++ +I YG
Sbjct: 421 WNSLVDVYAKSGKIVAAKQVSNLMSEIDEVTYTSLIDGYG 460
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/346 (25%), Positives = 156/346 (45%), Gaps = 57/346 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W + G Y G Y + L M + D KACS + R+GK+++
Sbjct: 248 TWNIISGGYLHTGNYVGALGLISRMRNFPTSLDPVAMIIGLKACSLIGAIRLGKEIHGLA 307
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I ++G +D V N+LI Y+KC L+ +
Sbjct: 308 IHRSYDG---------------------------IDN---VRNTLITMYSKCDDLRNAFI 337
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K ++ L +WN++++GYA EE + LL EM+ QPN I+L+ +L CA++
Sbjct: 338 VFQKTEENSLCTWNSIISGYAQVNKSEEASYLL--REMLLAGFQPNFITLASILPLCARI 395
Query: 212 KGVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
++ GK H Y+LR + + G ++ + V N +S D V + S+
Sbjct: 396 ANLQHGKEFHCYILRRKCFKDYTMLWNSLVDVYAKSGKIVAAKQVSNLMSEIDEVTYTSL 455
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQ-G 307
I + G+ AL L ++I + +KP+ VT+V+VL AC L + P+ G
Sbjct: 456 IDGYGNQGEGRVALALFDEMIRSGIKPDPVTMVAVLSACSHSKLVHEGQRLFMKMQPKYG 515
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
+ ++ ++D+YGR G + K++ I MP++ + +W +++
Sbjct: 516 IRPCLQHFSCMVDLYGRAGFLAKAKDIIHRMPYEPSGATWATLLNA 561
>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Vitis vinifera]
Length = 1088
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 91/393 (23%), Positives = 188/393 (47%), Gaps = 74/393 (18%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G QVH+ LI CG + F+G+ L++++ W S++
Sbjct: 295 GKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQ 354
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G++ + + LF M + G + + F + A + L D G++++ +++
Sbjct: 355 FGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLV---------- 404
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
R LL+ D ++ ++L+D Y+KC ++ +H F + +++ V
Sbjct: 405 -RNLLN-------------------SDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEV 444
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
S+NA+LAGY G EE L +M+ + +QP+ + + +L CA + G+ IH
Sbjct: 445 SYNALLAGYVQEGKAEEALELYHDMQS-EDGIQPDQFTFTTLLTLCANQRNDNQGRQIHA 503
Query: 223 YVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+++R +I H+ + CG + + +FN+++ R+ WNS+I + ++G+ +
Sbjct: 504 HLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQE 563
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN-----------ALID 320
AL L + + + +KP+ ++ S+L +C+ L+ +G +F+ L+D
Sbjct: 564 ALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVD 623
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
MY +CG++ + K++ K+++ NVM+S +
Sbjct: 624 MYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAF 656
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/394 (21%), Positives = 195/394 (49%), Gaps = 49/394 (12%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G Q+HAHLI + + ++L+ ++ +W SM+ Y
Sbjct: 498 GRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQ 557
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G +E + LF M G++PD F + +C L D + G++++++++ E +
Sbjct: 558 NGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGIL 617
Query: 103 KRPLLDLFIKCGRMEITSGLFEE-MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ L+D++ KCG M+ ++++ + +D ++NN ++ + + F +++Q++
Sbjct: 618 QVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNT 677
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
WN++LAGYA G ++E N +EM+++D++ + +++ ++ C+ + ++ G +H
Sbjct: 678 ALWNSILAGYANKGLKKESFNHF--LEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLH 735
Query: 222 GYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
+++ + + + CG + + +VF+ ++ +++V WN++IS + + G
Sbjct: 736 SLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCS 795
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNA 317
+AL L ++ + PN VT +++L AC + +GL + + +
Sbjct: 796 KEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTC 855
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMI 350
++D+ GR G ++ +++ MP + VS W ++
Sbjct: 856 MVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALL 889
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/426 (22%), Positives = 189/426 (44%), Gaps = 108/426 (25%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G ++H HL+ + LGS L++++ ++ +++ Y
Sbjct: 396 GRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQ 455
Query: 43 LGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G EE + L++ M + G++PD F + C+ ++ G+ ++ ++I
Sbjct: 456 EGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLI--------- 506
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
R IT ++ +V L+ Y++C L + F+++ +++
Sbjct: 507 -------------RANIT--------KNIIVETELVHMYSECGRLNYAKEIFNRMAERNA 545
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
SWN+M+ GY G +E L +M++ ++P+ SLS +L++C + + G+ +H
Sbjct: 546 YSWNSMIEGYQQNGETQEALRLFKQMQL--NGIKPDCFSLSSMLSSCVSLSDSQKGRELH 603
Query: 222 GYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
+++R+ + + CG + + V++Q +DV++ N ++SAFV SG+
Sbjct: 604 NFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRAN 663
Query: 271 DALDLLR-------------------------------DVIVANVKPNTVTIVSVLPACL 299
DA +L +++ ++++ + +T+V+++ C
Sbjct: 664 DAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCS 723
Query: 300 KLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
L AL G S + AL+DMY +CGAI K+R +F M KN+VSWN
Sbjct: 724 SLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWN 783
Query: 348 VMISVY 353
MIS Y
Sbjct: 784 AMISGY 789
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 85/343 (24%), Positives = 150/343 (43%), Gaps = 54/343 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y + Y E++ L+ M G D F P V KAC ++D M
Sbjct: 143 WNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMED----------MG 192
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ R L +K G ++ + V +L+D YA+ ++ +
Sbjct: 193 GV---------RQLQSSVVKAG-----------LNCNLFVGGALVDGYARFGWMDDAVTS 232
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
+I+ +V+WNA++AGY EE + D M ++ + P+ + + L C ++
Sbjct: 233 LDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRM--LKIGVCPDNFTFASALRVCGALR 290
Query: 213 GVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
GK +H +V I + C VF+++ R+ V WNSIIS
Sbjct: 291 SRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIIS 350
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGT 310
A + G DAL L + + K N + S+L A LA + +G L +
Sbjct: 351 AEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNS 410
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ +AL+DMY +CG ++++ ++F + +N VS+N +++ Y
Sbjct: 411 DIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGY 453
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/321 (21%), Positives = 128/321 (39%), Gaps = 61/321 (19%)
Query: 61 VRPDHFVCPKVYKA----CSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM 116
+P V P Y + C + ++ GK ++ MIS + +A + +L L+ + G +
Sbjct: 63 TKPASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCL 122
Query: 117 E---ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYAL 173
+ LFEEM +++L +WN M+ YA
Sbjct: 123 DDLCYARKLFEEM------------------------------PERNLTAWNTMILAYAR 152
Query: 174 GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS- 232
EV L M + + + V+ AC ++ + + + V++ ++ +
Sbjct: 153 VDDYMEVLRLYGRMR--GSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNL 210
Query: 233 ----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
G++ + + +++ VV WN++I+ +V+ +A + ++
Sbjct: 211 FVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKI 270
Query: 283 NVKPNTVTIVSVLPACLKLAA-----------LPQGLGTGSFVWNALIDMYGRCGAIQKS 331
V P+ T S L C L + + G +FV NALIDMY +C +
Sbjct: 271 GVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESC 330
Query: 332 RKIFVLMPHKNLVSWNVMISV 352
K+F M +N V+WN +IS
Sbjct: 331 LKVFDEMGERNQVTWNSIISA 351
>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
Length = 638
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 106/395 (26%), Positives = 178/395 (45%), Gaps = 77/395 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G +VH ++ G E F+G+ LL + N W +M+G+++V
Sbjct: 60 GREVHGSVVKLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSV 119
Query: 43 LGY-YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G+ Y + +++F LMID+G++P+ EL+ ++ G++V+ I + E
Sbjct: 120 NGWHYRDALDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLE---- 175
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
D + NSLID YAK + + F K+ K++
Sbjct: 176 --------------------------SDIFIANSLIDMYAKSGHSTEASNVFYKLDAKNV 209
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSWNAM+A +A F L+ +M+ PN+++ + VL ACA++ V+ GK IH
Sbjct: 210 VSWNAMIANFAQNRFELVAVGLVRQMQ--DYGELPNSVTFTNVLPACARMGLVRPGKEIH 267
Query: 222 G-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
+V + G + + +VF+ S RD V +N +I ++
Sbjct: 268 ARSIHMGCAFDLFVSNALTDMYAKSGHLKLARNVFDT-SLRDEVSYNILIVGHSQTSDCS 326
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNALI 319
++L L ++ + +K + V+ + L AC L A+ QG FV N+L+
Sbjct: 327 ESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEIHGFLLRKLFHIHLFVANSLL 386
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
D Y +CG I +R IF M +K++ SWN MI YG
Sbjct: 387 DFYTKCGRIGLARNIFDRMTNKDVASWNTMILGYG 421
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 90/341 (26%), Positives = 163/341 (47%), Gaps = 57/341 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +++ Y++ G + ++ M+ GVRPD P V KAC++ + R G++V+ ++
Sbjct: 10 WNTLIRGYSIAGVGGGL-EVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGSVV 68
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ FE D V N+L+ FY C L+ +
Sbjct: 69 KLGFE------------------------------SDVFVGNTLLSFYGNCGGLRDAGRV 98
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME-MIQTDMQPNTISLSGVLAACAQV 211
F ++ +KDLVSWN M+ +++ G+ + LD MI ++PN+I++S L ++
Sbjct: 99 FDEMPEKDLVSWNTMIGVFSVNGW--HYRDALDMFRLMIDEGLKPNSITISSFLPVLVEL 156
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ K G+ +HG +R I + G + +VF +L ++VV WN++I
Sbjct: 157 EFFKAGREVHGSSIRMGLESDIFIANSLIDMYAKSGHSTEASNVFYKLDAKNVVSWNAMI 216
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLG 309
+ F ++ + A+ L+R + PN+VT +VLPAC ++ ++ G
Sbjct: 217 ANFAQNRFELVAVGLVRQMQDYGELPNSVTFTNVLPACARMGLVRPGKEIHARSIHMGCA 276
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
FV NAL DMY + G ++ +R +F ++ VS+N++I
Sbjct: 277 FDLFVSNALTDMYAKSGHLKLARNVFD-TSLRDEVSYNILI 316
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/379 (23%), Positives = 171/379 (45%), Gaps = 76/379 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G +VH I G+E F+ + L++++ +W +M+ +
Sbjct: 162 GREVHGSSIRMGLESDIFIANSLIDMYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQ 221
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+ V L M D G P+ V AC+ + R GK+++ I + C
Sbjct: 222 NRFELVAVGLVRQMQDYGELPNSVTFTNVLPACARMGLVRPGKEIHARSIHM-----GCA 276
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
DLF V+N+L D YAK +LK++ F +D V
Sbjct: 277 ----FDLF---------------------VSNALTDMYAKSGHLKLARNVFD-TSLRDEV 310
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
S+N ++ G++ E +L EM+++ ++ + +S G L+ACA + +K GK IHG
Sbjct: 311 SYNILIVGHSQTSDCSESLSLFSEMQLM--GLKQDNVSFMGALSACANLTAIKQGKEIHG 368
Query: 223 YVLRH--HIHL---------STACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
++LR HIHL T CG + + ++F++++ +DV WN++I + G++
Sbjct: 369 FLLRKLFHIHLFVANSLLDFYTKCGRIGLARNIFDRMTNKDVASWNTMILGYGMLGELDT 428
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALID 320
A+DL ++ +V+ ++V+ ++VL AC L + G+ + ++D
Sbjct: 429 AIDLFENMRKDDVEYDSVSFIAVLSACSHGGLLEKGRKYFDELKARGIEPTQMHYACMVD 488
Query: 321 MYGRCGAIQKSRKIFVLMP 339
+ GR G ++++ ++ +P
Sbjct: 489 LLGRAGLMEEAAELIKGLP 507
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 113/215 (52%), Gaps = 30/215 (13%)
Query: 164 WNAMLAGYALGGFRE--EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
WN ++ GY++ G EV N +M++ ++P+ + VL ACA V+ G+ +H
Sbjct: 10 WNTLIRGYSIAGVGGGLEVYN-----QMVRIGVRPDDHTFPFVLKACADAFEVRKGREVH 64
Query: 222 GYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG-QV 269
G V++ + CG + + VF+++ +D+V WN++I F +G
Sbjct: 65 GSVVKLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHY 124
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKL-----------AALPQGLGTGSFVWNAL 318
DALD+ R +I +KPN++TI S LP ++L +++ GL + F+ N+L
Sbjct: 125 RDALDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSL 184
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
IDMY + G ++ +F + KN+VSWN MI+ +
Sbjct: 185 IDMYAKSGHSTEASNVFYKLDAKNVVSWNAMIANF 219
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 12/110 (10%)
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------- 307
+WN++I + +G V L++ ++ V+P+ T VL AC + +G
Sbjct: 9 LWNTLIRGYSIAG-VGGGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGSV 67
Query: 308 --LGTGS--FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
LG S FV N L+ YG CG ++ + ++F MP K+LVSWN MI V+
Sbjct: 68 VKLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVF 117
>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
Length = 704
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 166/344 (48%), Gaps = 54/344 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y G+ + + L M ++G RPD + A ++ + R+G V+ Y++
Sbjct: 99 WNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVL 158
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
FE L++ V+ +L+D Y+KC + ++
Sbjct: 159 RAGFE-------SLVN-----------------------VSTALVDMYSKCGSVSIARVI 188
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + + +VSWN+M+ GY G E +L +M+ +QP +++ G L ACA +
Sbjct: 189 FDGMDHRTVVSWNSMIDGYVQSGDAEGA--MLIFQKMLDEGVQPTNVTVMGALHACADLG 246
Query: 213 GVKLGKAIHGYV-----------LRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ GK +H V + I + + C V + +F L + +V WN++I
Sbjct: 247 DLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMIL 306
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGT 310
+ ++G V +AL+ ++ N+KP++ T+VSV+PA +L+ Q L
Sbjct: 307 GYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDK 366
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
FV AL+DMY +CGAI +RK+F +M +++++WN MI YG
Sbjct: 367 NVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYG 410
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 160/330 (48%), Gaps = 54/330 (16%)
Query: 47 EEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPL 106
+ ++ F M VRP + + K C + D + GK+++ +I+ F N
Sbjct: 12 DSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSGFSWN------- 64
Query: 107 LDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNA 166
LF G +++ YAKCR + ++ F ++ ++DLV WN
Sbjct: 65 --LFAMTG---------------------VVNMYAKCRQINDAYNMFDRMPERDLVCWNT 101
Query: 167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR 226
M++GYA GF + L+ + M + +P++I++ +L A A + +++G A+HGYVLR
Sbjct: 102 MISGYAQNGFAKVALMLV--LRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLR 159
Query: 227 HH----IHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDL 275
+++STA CG V + +F+ + R VV WNS+I +V+SG A+ +
Sbjct: 160 AGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLI 219
Query: 276 LRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGR 324
+ ++ V+P VT++ L AC L L +G L + V N+LI MY +
Sbjct: 220 FQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSK 279
Query: 325 CGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
C + + IF + +K LVSWN MI Y
Sbjct: 280 CKRVDIAADIFKNLRNKTLVSWNAMILGYA 309
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 95/398 (23%), Positives = 174/398 (43%), Gaps = 82/398 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ +G+ VH +++ G E + + L++++ +W SM+
Sbjct: 147 LRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDG 206
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G E + +F M+D+GV+P + AC++L D GK V+ + +K
Sbjct: 207 YVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLK---- 262
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+D D V NSLI Y+KC+ + ++ F ++ K
Sbjct: 263 --------------------------LDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNK 296
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
LVSWNAM+ GYA G E N EM+ +++P++ ++ V+ A A++ + K
Sbjct: 297 TLVSWNAMILGYAQNGCVNEALNAFCEMQ--SRNIKPDSFTMVSVIPALAELSIPRQAKW 354
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IHG V+R + + CG + + +F+ ++ R V+ WN++I + G
Sbjct: 355 IHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGL 414
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL----------GTGSFV--WN 316
+++L +++ +KPN +T + L AC + +GL G + +
Sbjct: 415 GKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYG 474
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
A++D+ GR G + ++ MP K I+VYG
Sbjct: 475 AMVDLLGRAGRLNQAWDFIQKMPIKP------GITVYG 506
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 101/209 (48%), Gaps = 24/209 (11%)
Query: 167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR 226
ML GYA + + M+ ++P + + +L C +K GK IHG V+
Sbjct: 1 MLKGYAKSSSLDSALSFFSRMK--HDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVIT 58
Query: 227 HH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDL 275
+++ C + + ++F+++ RD+V WN++IS + ++G AL L
Sbjct: 59 SGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALML 118
Query: 276 LRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW-----------NALIDMYGR 324
+ + +P+++TIVS+LPA L G+ +V AL+DMY +
Sbjct: 119 VLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSK 178
Query: 325 CGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
CG++ +R IF M H+ +VSWN MI Y
Sbjct: 179 CGSVSIARVIFDGMDHRTVVSWNSMIDGY 207
>gi|255553249|ref|XP_002517667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543299|gb|EEF44831.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 628
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 160/309 (51%), Gaps = 26/309 (8%)
Query: 70 KVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQ 128
K+ +C + K R + ++ +I +F ++ L+D + KCG + +F++M ++
Sbjct: 24 KLLDSCLKSKSLRDTRRIHARIIKTQFAYEVFIQNRLIDAYGKCGCFDDARKIFDQMPEK 83
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
+ N+++ K +L F + + D SWN+++AG+A EE N ++
Sbjct: 84 NVFSWNAIVSTLVKSGFLDEGARLFVSMPEPDQCSWNSLIAGFAQHDRFEEALNYF--VK 141
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGF 237
M + N + L+ACA +K +K+G IHG +L+ I + + CGF
Sbjct: 142 MHRKGFVLNEYTFGSGLSACAGLKDLKIGTQIHGLMLKSQFLLDVYMGSALIDIYSKCGF 201
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
V C+ VF+ + R+VV WNS+I+ + ++G +AL++ ++ + +P+ VT+ SV+ A
Sbjct: 202 VDCAQRVFDGMMERNVVSWNSLITCYEQNGPSREALEIFMRMMESGFEPDEVTLASVVSA 261
Query: 298 CLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
C LAA QGL + V NAL+DMY +CG I ++R +F MP +N+VS
Sbjct: 262 CASLAAAKQGLEIHACVVKRDKLRDDLILSNALVDMYAKCGRINEARCVFDRMPIRNVVS 321
Query: 346 WNVMISVYG 354
M+S Y
Sbjct: 322 ETSMVSGYA 330
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 90/367 (24%), Positives = 174/367 (47%), Gaps = 46/367 (12%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+++G Q+H ++ L ++GS L++++ +W S++
Sbjct: 167 LKIGTQIHGLMLKSQFLLDVYMGSALIDIYSKCGFVDCAQRVFDGMMERNVVSWNSLITC 226
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI-KFEG 98
Y G E + +F M++ G PD V AC+ L + G +++ ++ K
Sbjct: 227 YEQNGPSREALEIFMRMMESGFEPDEVTLASVVSACASLAAAKQGLEIHACVVKRDKLRD 286
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
+ + L+D++ KCGR+ +F+ M ++ + S++ YAK +K + F+K+
Sbjct: 287 DLILSNALVDMYAKCGRINEARCVFDRMPIRNVVSETSMVSGYAKTASVKAARLLFTKMI 346
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
++++VSWNA++AGY G EE L ++ + + P + +L ACA + ++LG
Sbjct: 347 ERNVVSWNALIAGYTQNGENEEALRLFRMLK--REAICPTHYTFGNLLNACANLADLQLG 404
Query: 218 KAIHGYVLRHH-----------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ H +VL+H I + CG V C +F + RD V WN++I
Sbjct: 405 RQAHAHVLKHGFRFQYGEESDVFVGNALIDMYMKCGSVEEGCRIFENMVERDYVSWNAMI 464
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALID 320
+ ++G ++AL L R ++ + KP+ VT++ L AC + +G ++++ +
Sbjct: 465 VGYAQNGYGMEALGLFRKMLASGEKPDHVTMIGALCACSHAGLVQEGRKH----FSSMTE 520
Query: 321 MYGRCGA 327
YG GA
Sbjct: 521 EYGLEGA 527
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/384 (25%), Positives = 170/384 (44%), Gaps = 92/384 (23%)
Query: 31 CNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
C+W S++ + +EE +N F M KG + + AC+ LKD ++G ++
Sbjct: 117 CSWNSLIAGFAQHDRFEEALNYFVKMHRKGFVLNEYTFGSGLSACAGLKDLKIGTQIHGL 176
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
M+ +F LLD+++ ++LID Y+KC ++ +
Sbjct: 177 MLKSQF---------LLDVYM---------------------GSALIDIYSKCGFVDCAQ 206
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + ++++VSWN+++ Y G E + M M+++ +P+ ++L+ V++ACA
Sbjct: 207 RVFDGMMERNVVSWNSLITCYEQNGPSREALEIF--MRMMESGFEPDEVTLASVVSACAS 264
Query: 211 VKGVKLGKAIHGYV-----LRHHIHLSTA-------CGFVICSCSVFNQLS--------- 249
+ K G IH V LR + LS A CG + + VF+++
Sbjct: 265 LAAAKQGLEIHACVVKRDKLRDDLILSNALVDMYAKCGRINEARCVFDRMPIRNVVSETS 324
Query: 250 ----------------------TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
R+VV WN++I+ + ++G+ +AL L R + + P
Sbjct: 325 MVSGYAKTASVKAARLLFTKMIERNVVSWNALIAGYTQNGENEEALRLFRMLKREAICPT 384
Query: 288 TVTIVSVLPACLKLAALPQGLGTGS-----------------FVWNALIDMYGRCGAIQK 330
T ++L AC LA L G + FV NALIDMY +CG++++
Sbjct: 385 HYTFGNLLNACANLADLQLGRQAHAHVLKHGFRFQYGEESDVFVGNALIDMYMKCGSVEE 444
Query: 331 SRKIFVLMPHKNLVSWNVMISVYG 354
+IF M ++ VSWN MI Y
Sbjct: 445 GCRIFENMVERDYVSWNAMIVGYA 468
>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 874
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 111/416 (26%), Positives = 187/416 (44%), Gaps = 98/416 (23%)
Query: 3 LGIQVHAHLIVCG----------VELCAFLG-----SQLLEVF-----CNWTSMMGMYNV 42
LG QVHA ++ G V + A LG L +VF +W +++ +
Sbjct: 205 LGKQVHAFVLRNGDWRTFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQ 264
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+EE + ++M+ GVRP+ V ACS L+ GK+++ +++
Sbjct: 265 NDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVL---------- 314
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNN----SLIDFYAKCRYLKVSHCKFSKIKQ 158
M+ D + N+ +L+D Y C+ + F + +
Sbjct: 315 -----------------------MNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFR 351
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+ + WNAM+AGY F E L EM + + + PN+++LS VL AC + + +
Sbjct: 352 RTIAVWNAMIAGYVRNEFDYEAIELFVEM-VFELGLSPNSVTLSSVLPACVRCESFLDKE 410
Query: 219 AIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
IH YV + + + G + + S+F ++ +D+V WN++I+ +V G
Sbjct: 411 GIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCG 470
Query: 268 QVVDALDLLRDVIVAN------------------VKPNTVTIVSVLPACLKLAALPQG-- 307
+ DAL+LL D+ +KPN+VT+++VLP C LAAL +G
Sbjct: 471 RHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKE 530
Query: 308 ---------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L V +AL+DMY +CG + SR +F M +N+++WNV+I YG
Sbjct: 531 IHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLIMAYG 586
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 111/399 (27%), Positives = 183/399 (45%), Gaps = 79/399 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
+ LG Q+HAH+ G L + + L+ ++ +W SM+
Sbjct: 101 LNLGKQLHAHVFKFGQALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINA 160
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL-KDYRVGKDVYDYMISIKFEG 98
+E V+LF LM+ + V P F V ACS L +GK V+ +++
Sbjct: 161 ACRFEEWELAVHLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVL------ 214
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
D NN+L+ YAK + + F
Sbjct: 215 -------------------------RNGDWRTFTNNALVTMYAKLGRVYEAKTLFDVFDD 249
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
KDLVSWN +++ + EE LL M+Q+ ++PN ++L+ VL AC+ ++ + GK
Sbjct: 250 KDLVSWNTIISSLSQNDRFEEA--LLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGK 307
Query: 219 AIHGYVLRHHIHLSTA---CGFV--ICSCS-------VFNQLSTRDVVVWNSIISAFVRS 266
IH +VL ++ + + C V C+C VF+ + R + VWN++I+ +VR+
Sbjct: 308 EIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRN 367
Query: 267 GQVVDALDLLRDVIVA-NVKPNTVTIVSVLPACLKLAA-----------LPQGLGTGSFV 314
+A++L +++ + PN+VT+ SVLPAC++ + + G +V
Sbjct: 368 EFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEKDKYV 427
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
NAL+DMY R G I+ +R IF M K++VSWN MI+ Y
Sbjct: 428 QNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGY 466
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/332 (28%), Positives = 159/332 (47%), Gaps = 57/332 (17%)
Query: 46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP 105
+ + ++ + M+ GV PD+F P V KA + ++D +GK ++ ++
Sbjct: 66 FHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVF------------- 112
Query: 106 LLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWN 165
K G+ T+ V NSL++ Y KC + + F +I +D VSWN
Sbjct: 113 ------KFGQALPTA-----------VPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWN 155
Query: 166 AMLAGYALGGFRE-EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ-VKGVKLGKAIHGY 223
+M+ A F E E+ L + M+ ++ P + +L V AC+ + G+ LGK +H +
Sbjct: 156 SMIN--AACRFEEWELAVHLFRL-MLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAF 212
Query: 224 VLRHH----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
VLR+ + + G V + ++F+ +D+V WN+IIS+ ++ + +AL
Sbjct: 213 VLRNGDWRTFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEAL 272
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNALIDM 321
L ++ + V+PN VT+ SVLPAC L L G L SFV AL+DM
Sbjct: 273 LYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDM 332
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
Y C +K R +F M + + WN MI+ Y
Sbjct: 333 YCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGY 364
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/423 (22%), Positives = 177/423 (41%), Gaps = 110/423 (26%)
Query: 8 HAHLIVCGVELCAFL------------GSQLLEVFCN---------------------WT 34
H ++ CG E+ AF+ G L++++CN W
Sbjct: 299 HLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWN 358
Query: 35 SMMGMYNVLGYYEEIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS 93
+M+ Y + E + LF M+ + G+ P+ V AC + + + ++ ++
Sbjct: 359 AMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVK 418
Query: 94 IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKF 153
FE +D V N+L+D Y++ ++++ F
Sbjct: 419 WGFE------------------------------KDKYVQNALMDMYSRMGRIEIARSIF 448
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD----------------MQPN 197
+ +KD+VSWN M+ GY + G ++ NLL +M+ Q + ++PN
Sbjct: 449 GSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPN 508
Query: 198 TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACG------FVICSC-----SVFN 246
+++L VL CA + + GK IH Y ++ + A G + C C +VF
Sbjct: 509 SVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFE 568
Query: 247 QLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA-----NVKPNTVTIVSVLPACLKL 301
Q+S R+V+ WN +I A+ G+ +AL L R ++ ++PN VT +++ +
Sbjct: 569 QMSVRNVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHS 628
Query: 302 AALPQGLG------------TGSFVWNALIDMYGRCGAIQKSRKIFVLMPH--KNLVSWN 347
+ +GL S + L+D+ GR G I+++ + MP K + +W+
Sbjct: 629 GMVDEGLNLFYTMKAKHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAWS 688
Query: 348 VMI 350
++
Sbjct: 689 SLL 691
>gi|356536685|ref|XP_003536866.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71490-like [Glycine max]
Length = 723
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 100/400 (25%), Positives = 191/400 (47%), Gaps = 52/400 (13%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G Q+HA +I G++ L S+L+ + N W ++ Y
Sbjct: 100 GKQLHAQVISLGLDQNPILVSRLVNFYTNVNLLVDAQFVTESSNTLDPLHWNLLISAYVR 159
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G++ E + ++ M++K + PD + P V KAC E D+ G +V+ + + E + V
Sbjct: 160 NGFFVEALCVYKNMLNKKIEPDEYTYPSVLKACGESLDFNSGLEVHRSIEASSMEWSLFV 219
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK-- 159
L+ ++ + G++EI LF+ M +D + N++I YA K + F ++++
Sbjct: 220 HNALVSMYGRFGKLEIARHLFDNMPRRDSVSWNTIISCYASRGIWKEAFQLFGSMQEEGV 279
Query: 160 --DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+++ WN + G G L+ +M +T + + I++ L AC+ + +KLG
Sbjct: 280 EMNVIIWNTIAGGCLHSGNFRGALQLISQM---RTSIHLDAIAMVVGLNACSHIGAIKLG 336
Query: 218 KAIHGYVLRH-----------HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
K IHG+ +R I + + C + + +F++ + ++ WN+++S +
Sbjct: 337 KEIHGHAVRTCFDVFDNVKNALITMYSRCRDLGHAFILFHRTEEKGLITWNAMLSGYAHM 396
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------ 314
+ + L R+++ ++PN VTI SVLP C ++A L G ++
Sbjct: 397 DRYEEVTFLFREMLQEGMEPNYVTIASVLPLCARIANLQHGKEFHCYIMKHKQFEEYLLL 456
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
WNAL+DMY R G + ++RK+F + ++ V++ MI YG
Sbjct: 457 WNALVDMYSRSGRVLEARKVFDSLTKRDEVTYTSMILGYG 496
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 92/342 (26%), Positives = 163/342 (47%), Gaps = 38/342 (11%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ Y G ++E LF M ++GV + + + C ++R + M
Sbjct: 250 SWNTIISCYASRGIWKEAFQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGALQLISQM 309
Query: 92 -ISIKFEG-------NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKC 143
SI + NAC + L + + + F+ D V N+LI Y++C
Sbjct: 310 RTSIHLDAIAMVVGLNACSHIGAIKLGKEIHGHAVRT-CFDVFDN---VKNALITMYSRC 365
Query: 144 RYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSG 203
R L + F + ++K L++WNAML+GYA EEVT L EM +Q M+PN ++++
Sbjct: 366 RDLGHAFILFHRTEEKGLITWNAMLSGYAHMDRYEEVTFLFREM--LQEGMEPNYVTIAS 423
Query: 204 VLAACAQVKGVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTR 251
VL CA++ ++ GK H Y+++H + + + G V+ + VF+ L+ R
Sbjct: 424 VLPLCARIANLQHGKEFHCYIMKHKQFEEYLLLWNALVDMYSRSGRVLEARKVFDSLTKR 483
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---- 307
D V + S+I + G+ L L ++ +KP+ VT+V+VL AC + QG
Sbjct: 484 DEVTYTSMILGYGMKGEGETTLKLFEEMCKLEIKPDHVTMVAVLTACSHSGLVAQGQVLF 543
Query: 308 ---LGTGSFV-----WNALIDMYGRCGAIQKSRKIFVLMPHK 341
+ V + + D++GR G + K+++ MP+K
Sbjct: 544 KRMIDVHGIVPRLEHYACMADLFGRAGLLNKAKEFITGMPYK 585
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/398 (22%), Positives = 190/398 (47%), Gaps = 53/398 (13%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G ++H+H+ G+E + + L+ ++C +W++M+ Y
Sbjct: 277 GRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQ 336
Query: 43 LGYYE-----EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
GY + E+ L M +GV P+ + +AC+ G+ ++ + + FE
Sbjct: 337 SGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFE 396
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKI 156
+ ++ + +++ KCG + +F +M +++ + S + Y KC L + FS++
Sbjct: 397 LDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEM 456
Query: 157 KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKL 216
+++VSWN M+AGYA G +V LL M+ QP+ +++ +L AC + G++
Sbjct: 457 PTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKA--EGFQPDRVTVITILEACGALAGLER 514
Query: 217 GKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVR 265
GK +H ++ + T CG V + +VF+++S RD V WN++++ + +
Sbjct: 515 GKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQ 574
Query: 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSF 313
G ++A+DL + ++ V PN +T+ +V+ AC + + +G +
Sbjct: 575 HGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQ 634
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ ++D+ GR G +Q++ + MP ++ W+ ++
Sbjct: 635 HYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALL 672
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 95/385 (24%), Positives = 180/385 (46%), Gaps = 71/385 (18%)
Query: 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS 93
T+++ MY+ G +F+ M ++ V + +A ++ + ++Y+ M+
Sbjct: 196 TALITMYSKCGEISVACEVFHKMTERNV----VSWTAIIQANAQHRKLNEAFELYEQMLQ 251
Query: 94 IKFEGNACVKRPLLDL-----FIKCGRMEITSGLFEE-MDQDFLVNNSLIDFYAKCRYLK 147
NA LL+ + GR I S + E ++ D +V N+LI Y KC ++
Sbjct: 252 AGISPNAVTFVSLLNSCNTPEALNRGR-RIHSHISERGLETDMIVANALITMYCKCNSVQ 310
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFRE-----EVTNLLDEMEMIQTDMQPNTISLS 202
+ F ++ ++D++SW+AM+AGYA G+++ EV LL+ M + + PN ++
Sbjct: 311 EAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMR--REGVFPNKVTFM 368
Query: 203 GVLAACAQVKGVKLGKAIH------GYVLRHHIHLST----------------------- 233
+L AC ++ G+ IH G+ L + +
Sbjct: 369 SILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANK 428
Query: 234 -------------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280
CG + + VF+++ TR+VV WN +I+ + ++G +V +LL +
Sbjct: 429 NVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMK 488
Query: 281 VANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQ 329
+P+ VT++++L AC LA L +G L + + V +LI MY +CG +
Sbjct: 489 AEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVA 548
Query: 330 KSRKIFVLMPHKNLVSWNVMISVYG 354
++R +F M +++ V+WN M++ YG
Sbjct: 549 EARTVFDKMSNRDTVAWNAMLAGYG 573
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 143/270 (52%), Gaps = 29/270 (10%)
Query: 112 KCGRMEITSGLFEEMDQ-----DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNA 166
K R E + +++D+ D + NSLI+FY+K + + F ++ +D+V+W++
Sbjct: 68 KARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSS 127
Query: 167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV-- 224
M+A YA + + + M +++PN I+ +L AC ++ G+ IH V
Sbjct: 128 MIAAYAGNNHPAKAFDTFERM--TDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKA 185
Query: 225 --LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDL 275
+ + ++TA CG + +C VF++++ R+VV W +II A + ++ +A +L
Sbjct: 186 MGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFEL 245
Query: 276 LRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWNALIDMYGR 324
++ A + PN VT VS+L +C AL +GL T V NALI MY +
Sbjct: 246 YEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCK 305
Query: 325 CGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
C ++Q++R+IF M ++++SW+ MI+ Y
Sbjct: 306 CNSVQEAREIFDRMSKRDVISWSAMIAGYA 335
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/400 (23%), Positives = 174/400 (43%), Gaps = 80/400 (20%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
E G VH L GVE+ +LG+ L+ + W+SM+ Y
Sbjct: 73 EDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAY 132
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+ + + F M D + P+ + KAC+ G+ ++ + ++
Sbjct: 133 AGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMG----- 187
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
M+ D V +LI Y+KC + V+ F K+ +++
Sbjct: 188 -------------------------METDVAVATALITMYSKCGEISVACEVFHKMTERN 222
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+VSW A++ A E L ++M +Q + PN ++ +L +C + + G+ I
Sbjct: 223 VVSWTAIIQANAQHRKLNEAFELYEQM--LQAGISPNAVTFVSLLNSCNTPEALNRGRRI 280
Query: 221 HGYV----LRHHIHLSTACGFVICSCS-------VFNQLSTRDVVVWNSIISAFVRSG-- 267
H ++ L + ++ A + C C+ +F+++S RDV+ W+++I+ + +SG
Sbjct: 281 HSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYK 340
Query: 268 ---QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTGSF----- 313
+ + LL + V PN VT +S+L AC AL QG L F
Sbjct: 341 DKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRS 400
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ A+ +MY +CG+I ++ ++F M +KN+V+W +S+Y
Sbjct: 401 LQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMY 440
>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1212
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 96/352 (27%), Positives = 165/352 (46%), Gaps = 53/352 (15%)
Query: 24 SQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRV 83
S L + +W +++ Y + +N F M D G +PD + A +
Sbjct: 311 SMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLA 370
Query: 84 GKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKC 143
G +V+ Y I +D + + NSLID Y KC
Sbjct: 371 GMEVHAYAIK------------------------------HGIDSNMHIGNSLIDMYGKC 400
Query: 144 RYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSG 203
+K F + +KDL+SW ++AGYA + NLL ++++ + D+ P + +
Sbjct: 401 CCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDP--MMIGS 458
Query: 204 VLAACAQVKGVKLGKAIHGYVLRHH----------IHLSTACGFVICSCSVFNQLSTRDV 253
+L AC+ +K KL K IHGYVL+ +++ V + VF ++++D+
Sbjct: 459 ILLACSGLKSEKLIKEIHGYVLKGGLADILIQNAIVNVYGELALVDYARHVFESINSKDI 518
Query: 254 VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF 313
V W S+I+ V +G ++AL+L +I N++P+ +T+VSVL A L++L +G F
Sbjct: 519 VSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGF 578
Query: 314 -----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ N+L+DMY RCG ++ +R IF + ++L+ W MI+ G
Sbjct: 579 LIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINANG 630
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/346 (25%), Positives = 160/346 (46%), Gaps = 56/346 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+G G Y E + L+ M GV D F P V KAC K+ R+G +++ +
Sbjct: 116 WNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAV 175
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEE--MDQDFLVNNSLIDFYAKCRYLKVSH 150
+ G V L+ ++ KCG + LF+ M++D
Sbjct: 176 KCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKD--------------------- 214
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
D VSWN++++ + G E +L M+ + ++ NT + L AC
Sbjct: 215 ---------DPVSWNSIISAHVGEGESLEALSLFRRMQ--EVGVESNTYTFVSALQACEG 263
Query: 211 VKGVKLGKAIHGYVLRHH----IHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
+K+G+ IH +L+ + +++S A CG + + VF + +D V WN++
Sbjct: 264 PTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTL 323
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGL 308
+S V++ DA++ +D+ + KP+ V++++++ A + A A+ G+
Sbjct: 324 LSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGI 383
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + N+LIDMYG+C ++ F MP K+L+SW +I+ Y
Sbjct: 384 DSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYA 429
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 114/250 (45%), Gaps = 27/250 (10%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
+D FL + + Y KC + F K+ ++ + +WNAM+ G E L
Sbjct: 79 LDSVFL-DTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYK 137
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTA 234
EM ++ + + + VL AC K +LG IHG +V I +
Sbjct: 138 EMRVLGVSL--DAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAK 195
Query: 235 CGFVICSCSVFNQ--LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
CG + + +F+ + D V WNSIISA V G+ ++AL L R + V+ NT T V
Sbjct: 196 CGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFV 255
Query: 293 SVLPACLKLAALPQGLG-----------TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK 341
S L AC + G G T +V NALI MY CG ++ + ++F M K
Sbjct: 256 SALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFK 315
Query: 342 NLVSWNVMIS 351
+ VSWN ++S
Sbjct: 316 DCVSWNTLLS 325
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 84/380 (22%), Positives = 165/380 (43%), Gaps = 77/380 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNV 42
G++VHA+ I G++ +G+ L++++ +WT+++ Y
Sbjct: 371 GMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQ 430
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+ + +NL + + + D + + ACS LK ++ K+++ Y++
Sbjct: 431 NECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLK--------- 481
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
GL D L+ N++++ Y + + + F I KD+V
Sbjct: 482 -----------------GGL-----ADILIQNAIVNVYGELALVDYARHVFESINSKDIV 519
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW +M+ G E L + + I+T+++P+ I+L VL A A + +K GK IHG
Sbjct: 520 SWTSMITCCVHNGLAIEALELFNSL--IETNIEPDLITLVSVLYAAAALSSLKKGKEIHG 577
Query: 223 YVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+++R L CG + + ++FN + RD+++W S+I+A G D
Sbjct: 578 FLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINANGMHGCGKD 637
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA------------LI 319
A+DL + NV P+ +T +++L AC + +G + N L+
Sbjct: 638 AIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLV 697
Query: 320 DMYGRCGAIQKSRKIFVLMP 339
D+ R +++++ MP
Sbjct: 698 DLLARSNSLEEAYHFVRNMP 717
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/342 (22%), Positives = 148/342 (43%), Gaps = 55/342 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ + G E ++LF M + GV + + +AC ++G+ ++ +
Sbjct: 218 SWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVI 277
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + V L+ ++ CG+ME +F+ M
Sbjct: 278 LKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSM------------------------- 312
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
KD VSWN +L+G + N +M+ + +P+ +S+ ++AA +
Sbjct: 313 -----LFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQ--DSGQKPDQVSVLNMIAASGRS 365
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACG------FVICSC-----SVFNQLSTRDVVVWNSII 260
+ G +H Y ++H I + G + C C S F + +D++ W +II
Sbjct: 366 ANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTII 425
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLG 309
+ + ++ +DAL+LLR V + + + + I S+L AC L + L GL
Sbjct: 426 AGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGLA 485
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ NA++++YG + +R +F + K++VSW MI+
Sbjct: 486 D-ILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMIT 526
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 91/193 (47%), Gaps = 31/193 (16%)
Query: 192 TDMQPNTI------SLSGVLAACAQVKGVKLGKAIHGYVLRHH------------IHLST 233
TD P T + S L CA K + G+ +H + L+ +H+
Sbjct: 34 TDPLPTTTRFPLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYG 93
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
CG + VF+++S R + WN++I A V +G+ V+A++L +++ V V + T
Sbjct: 94 KCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPC 153
Query: 294 VLPAC-----------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFV--LMPH 340
VL AC + A+ G G FV NALI MY +CG + +R +F LM
Sbjct: 154 VLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEK 213
Query: 341 KNLVSWNVMISVY 353
+ VSWN +IS +
Sbjct: 214 DDPVSWNSIISAH 226
>gi|347954484|gb|AEP33742.1| chlororespiratory reduction 21 [Barbarea verna]
Length = 607
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 96/345 (27%), Positives = 167/345 (48%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++G+ +G E + F M + G+ PD+FV P V KAC L+ R G+ V+ Y+
Sbjct: 134 SWAAIIGLKCRIGLCEGALMGFVEMFEDGIFPDNFVVPNVXKACGALQWSRFGRGVHGYV 193
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ K + CV V +SL D Y KC L +
Sbjct: 194 V--KSGXDDCV----------------------------FVASSLADMYGKCGVLDDARK 223
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I ++++V+WNA++ GY G EE L +M + ++P +++S L+A A +
Sbjct: 224 VFDEIPERNVVAWNALMVGYVQNGMNEEAIRLF--FDMREEGIEPTRVTVSTCLSASANM 281
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICS--CSV---------FNQLSTRDVVVWNSII 260
G++ GK H + H + L G I + C V F+++ +DVV WN +I
Sbjct: 282 GGIEEGKQSHAIAIVHGLELDNILGTSILNFYCKVGLIEYAEMIFDRMIEKDVVTWNLLI 341
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
S +V+ G V DA+ + + + + N+K + VT+ +++ A + L G L
Sbjct: 342 SGYVQQGLVEDAIHMCQLMRLENLKYDCVTLATLMSAAARTQNLKLGKEVQCYCIRHSLE 401
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + + IDMY +CG+I +RK F + K+L+ WN +++ Y
Sbjct: 402 SDIVLASTAIDMYAKCGSIVDARKAFDSIVEKDLILWNTLLAAYA 446
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/385 (21%), Positives = 168/385 (43%), Gaps = 92/385 (23%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYN 41
G VH +++ G + C F+ S L +++ W ++M Y
Sbjct: 185 FGRGVHGYVVKSGXDDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYV 244
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G EE + LF+ M ++G+ P A + + GK +
Sbjct: 245 QNGMNEEAIRLFFDMREEGIEPTRVTVSTCLSASANMGGIEEGKQSH------------- 291
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ I GL + D ++ S+++FY K ++ + F ++ +KD+
Sbjct: 292 -------------AIAIVHGL----ELDNILGTSILNFYCKVGLIEYAEMIFDRMIEKDV 334
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
V+WN +++GY G E+ ++ M + +++ + ++L+ +++A A+ + +KLGK +
Sbjct: 335 VTWNLLISGYVQQGLVEDAIHMCQLMRL--ENLKYDCVTLATLMSAAARTQNLKLGKEVQ 392
Query: 222 GYVLRHHIH-----LSTA------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y +RH + STA CG ++ + F+ + +D+++WN++++A+ G
Sbjct: 393 CYCIRHSLESDIVLASTAIDMYAKCGSIVDARKAFDSIVEKDLILWNTLLAAYAEPGLSG 452
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQK 330
+AL L ++ + +V PN +T WN +I + G + +
Sbjct: 453 EALRLFYEMQLESVPPNVIT------------------------WNLIILSFLGNGQVNE 488
Query: 331 SRKIFVLMPHK----NLVSWNVMIS 351
++++F+ M NLVSW M++
Sbjct: 489 AKEMFLQMQSSGVFPNLVSWTTMMN 513
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 144/305 (47%), Gaps = 44/305 (14%)
Query: 77 ELKDYRVGKDVYDYMIS-IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNS 135
+ ++ R+G ++Y ++ +E + C + + +K G DF N
Sbjct: 56 DFRNLRIGPEIYGEILQGCVYERDLCTGKQIHARILKNG--------------DFYARNE 101
Query: 136 LID-----FYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
I+ FY+KC +V+ FSK++ +++ SW A++ G E L+ +EM
Sbjct: 102 YIETKLVIFYSKCDSFEVAEVLFSKLRVRNVYSWAAIIGLKCRIGLCEGA--LMGFVEMF 159
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI-----------HLSTACGFVI 239
+ + P+ + V AC ++ + G+ +HGYV++ + CG +
Sbjct: 160 EDGIFPDNFVVPNVXKACGALQWSRFGRGVHGYVVKSGXDDCVFVASSLADMYGKCGVLD 219
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ VF+++ R+VV WN+++ +V++G +A+ L D+ ++P VT+ + L A
Sbjct: 220 DARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFFDMREEGIEPTRVTVSTCLSASA 279
Query: 300 KLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
+ A+ GL + + ++++ Y + G I+ + IF M K++V+WN+
Sbjct: 280 NMGGIEEGKQSHAIAIVHGLELDNILGTSILNFYCKVGLIEYAEMIFDRMIEKDVVTWNL 339
Query: 349 MISVY 353
+IS Y
Sbjct: 340 LISGY 344
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 84/368 (22%), Positives = 153/368 (41%), Gaps = 85/368 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q HA IV G+EL LG+ +L +C W ++
Sbjct: 284 IEEGKQSHAIAIVHGLELDNILGTSILNFYCKVGLIEYAEMIFDRMIEKDVVTWNLLISG 343
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G E+ +++ LM + ++ D + A + ++ ++GK+V Y
Sbjct: 344 YVQQGLVEDAIHMCQLMRLENLKYDCVTLATLMSAAARTQNLKLGKEVQCY--------- 394
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
C++ L + D ++ ++ ID YAKC + + F I +K
Sbjct: 395 -CIRHSL--------------------ESDIVLASTAIDMYAKCGSIVDARKAFDSIVEK 433
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
DL+ WN +LA YA G E L EM++ + PN I+ + ++ +
Sbjct: 434 DLILWNTLLAAYAEPGLSGEALRLFYEMQL--ESVPPNVITWNLIILS------------ 479
Query: 220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
++ ++ + + S VF L V W ++++ V++G +A+ LR +
Sbjct: 480 ---FLGNGQVNEAKEMFLQMQSSGVFPNL-----VSWTTMMNGLVQNGCSEEAILFLRKM 531
Query: 280 IVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------------VWNALIDMYGRCGA 327
+ ++PN ++I L AC LA+L G + + +L+DMY +CG
Sbjct: 532 QESGLRPNAISITVALSACAHLASLHLGRSIHGYIIRNQHHSSSVSIETSLVDMYAKCGD 591
Query: 328 IQKSRKIF 335
+ K+ IF
Sbjct: 592 LNKAEMIF 599
>gi|356498922|ref|XP_003518295.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Glycine max]
Length = 682
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 89/329 (27%), Positives = 162/329 (49%), Gaps = 21/329 (6%)
Query: 31 CNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W +M+ Y G +E V LF M+ G PD V +CS L D + + +
Sbjct: 230 ASWNAMLSGYAQSGAAQETVRLFDDMLSSGNEPDETTWVTVLSSCSSLGDPCLAESIVRK 289
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD--QDFLVNNSLIDFYAKCRYLKV 148
+ + F N VK LLD+ KCG +E+ +FE++ ++ + N++I YA+ L +
Sbjct: 290 LDRMNFRSNYFVKTALLDMHAKCGNLEVAQKIFEQLGVYKNSVTWNAMISAYARVGDLSL 349
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
+ F+K+ +++ VSWN+M+AGYA G + L EM + D +P+ +++ V +AC
Sbjct: 350 ARDLFNKMPERNTVSWNSMIAGYAQNGESLKAIQLFKEM-ISSKDSKPDEVTMVSVFSAC 408
Query: 209 AQVKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWN 257
+ + LG + +HI LS + CG + + F +++T+D+V +N
Sbjct: 409 GHLGRLGLGNWAVSILHENHIKLSISGYNSLIFMYLRCGSMEDARITFQEMATKDLVSYN 468
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV--- 314
++IS G +++ L+ + + P+ +T + VL AC L +G +
Sbjct: 469 TLISGLAAHGHGTESIKLMSKMKEDGIGPDRITYIGVLTACSHAGLLEEGWKVFESIKVP 528
Query: 315 ----WNALIDMYGRCGAIQKSRKIFVLMP 339
+ +IDM GR G ++++ K+ MP
Sbjct: 529 DVDHYACMIDMLGRVGKLEEAVKLIQSMP 557
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 144/302 (47%), Gaps = 64/302 (21%)
Query: 110 FIKCGRMEITSGLF---EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNA 166
+ KCG + + LF E +++ + +++ +AK R L+ + F ++ ++ + SWNA
Sbjct: 175 YWKCGNEKEATRLFCMMGESEKNVITWTTMVTGHAKMRNLETARMYFDEMPERRVASWNA 234
Query: 167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI------ 220
ML+GYA G +E L D+M + + +P+ + VL++C+ + L ++I
Sbjct: 235 MLSGYAQSGAAQETVRLFDDM--LSSGNEPDETTWVTVLSSCSSLGDPCLAESIVRKLDR 292
Query: 221 -----HGYVLRHHIHLSTACGFVICSCSVFNQLS-------------------------- 249
+ +V + + CG + + +F QL
Sbjct: 293 MNFRSNYFVKTALLDMHAKCGNLEVAQKIFEQLGVYKNSVTWNAMISAYARVGDLSLARD 352
Query: 250 ------TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA-NVKPNTVTIVSVLPACLKLA 302
R+ V WNS+I+ + ++G+ + A+ L +++I + + KP+ VT+VSV AC L
Sbjct: 353 LFNKMPERNTVSWNSMIAGYAQNGESLKAIQLFKEMISSKDSKPDEVTMVSVFSACGHLG 412
Query: 303 ALPQGLGTGSFV-------------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L GLG + +N+LI MY RCG+++ +R F M K+LVS+N +
Sbjct: 413 RL--GLGNWAVSILHENHIKLSISGYNSLIFMYLRCGSMEDARITFQEMATKDLVSYNTL 470
Query: 350 IS 351
IS
Sbjct: 471 IS 472
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 110/270 (40%), Gaps = 71/270 (26%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
D V N+++ YAK ++++ F ++ + WN +++GY G +E T L M
Sbjct: 132 HDHHVRNAIMGIYAKYGCIELARKLFDEMPDRTAADWNVIISGYWKCGNEKEATRLFCMM 191
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQ 247
+ + N I+ + ++ A+++ ++ + F++
Sbjct: 192 ----GESEKNVITWTTMVTGHAKMRNLETARM------------------------YFDE 223
Query: 248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC--------- 298
+ R V WN+++S + +SG + + L D++ + +P+ T V+VL +C
Sbjct: 224 MPERRVASWNAMLSGYAQSGAAQETVRLFDDMLSSGNEPDETTWVTVLSSCSSLGDPCLA 283
Query: 299 -----------------LKLAALPQ-----------------GLGTGSFVWNALIDMYGR 324
+K A L G+ S WNA+I Y R
Sbjct: 284 ESIVRKLDRMNFRSNYFVKTALLDMHAKCGNLEVAQKIFEQLGVYKNSVTWNAMISAYAR 343
Query: 325 CGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G + +R +F MP +N VSWN MI+ Y
Sbjct: 344 VGDLSLARDLFNKMPERNTVSWNSMIAGYA 373
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 80/200 (40%), Gaps = 44/200 (22%)
Query: 167 MLAGYA-LGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL 225
ML Y+ +G + V +L M+ D++P T S VL A K G +H Y+L
Sbjct: 73 MLKYYSQIGATTQVVVSLFKHMQYYN-DIKPYT-SFYPVLIKSAG----KAGMLLHAYLL 126
Query: 226 R----HHIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALD 274
+ H H+ A G + + +F+++ R WN IIS + + G +A
Sbjct: 127 KLGHSHDHHVRNAIMGIYAKYGCIELARKLFDEMPDRTAADWNVIISGYWKCGNEKEATR 186
Query: 275 LLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKI 334
L ++ + N +T W ++ + + ++ +R
Sbjct: 187 LF--CMMGESEKNVIT------------------------WTTMVTGHAKMRNLETARMY 220
Query: 335 FVLMPHKNLVSWNVMISVYG 354
F MP + + SWN M+S Y
Sbjct: 221 FDEMPERRVASWNAMLSGYA 240
>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
Length = 795
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 99/345 (28%), Positives = 166/345 (48%), Gaps = 53/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT ++ Y G+ E++ L M GV+PD + V AC+ + K ++
Sbjct: 185 SWTIIIAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAAT 244
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
IS ++GL D+D V +LI+ Y KC L+ +
Sbjct: 245 IS-------------------------STGL----DRDAAVGTALINLYGKCGALEEAFG 275
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I KD+VSW++M+A +A G + LL M M ++PN ++ VL A +
Sbjct: 276 VFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLL--MLMDLEGVRPNNVTFVNVLEAVTSL 333
Query: 212 KGVKLGKAIHGYVLR----HHIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNSII 260
K + GK IH +++ + L++A G+V + S+F RDVV W+S+I
Sbjct: 334 KAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCNWGWVETARSIFESSRERDVVSWSSMI 393
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLG 309
+ + ++ AL L R++ V V+PN+VT VS + AC + AL + GL
Sbjct: 394 AGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDACAGVGALRRGTQLHERVRCLGLD 453
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V AL+++YG+CG ++++ +F+ M KNL++W + YG
Sbjct: 454 KDVPVATALVNLYGKCGRLEEAEAVFLGMKKKNLLTWTSIAMAYG 498
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 156/345 (45%), Gaps = 56/345 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKV-YKACSELKDYRVGKDVYDYM 91
WTS++ + G++ + + LF M+ GV PD + K ++ GK V+ ++
Sbjct: 84 WTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSILLKWSGRERNLDEGKRVHSHI 143
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ +EG+ V +++++ KCG +E +F+
Sbjct: 144 MQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFD--------------------------- 176
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
I+ ++ SW ++A YA G EV LL M Q ++P+ + + VL AC V
Sbjct: 177 ---SIQDPNVFSWTIIIAAYAQNGHCMEVLRLLSRMN--QAGVKPDGYTFTTVLGACTAV 231
Query: 212 KGVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
++ K +H + I+L CG + + VF Q+ +D+V W+S+
Sbjct: 232 GALEEAKILHAATISSTGLDRDAAVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSM 291
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----- 314
I+AF +SGQ A+ LL + + V+PN VT V+VL A L A G + +
Sbjct: 292 IAAFAQSGQAKSAIQLLMLMDLEGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQAGY 351
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+AL+ MY G ++ +R IF +++VSW+ MI+ Y
Sbjct: 352 SDDVCLTSALVKMYCNWGWVETARSIFESSRERDVVSWSSMIAGY 396
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/344 (21%), Positives = 161/344 (46%), Gaps = 55/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W+SM+ + G + + L LM +GVRP++ V +A + LK ++ GK+++ +
Sbjct: 287 SWSSMIAAFAQSGQAKSAIQLLMLMDLEGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARI 346
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + + C+ L+ ++ G +E +FE
Sbjct: 347 VQAGYSDDVCLTSALVKMYCNWGWVETARSIFESS------------------------- 381
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+++D+VSW++M+AGY+ +L EME+ +QPN+++ + ACA V
Sbjct: 382 -----RERDVVSWSSMIAGYSQNESPARALSLFREMEV--DGVQPNSVTFVSAIDACAGV 434
Query: 212 KGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
++ G +H V L + ++TA CG + + +VF + ++++ W SI
Sbjct: 435 GALRRGTQLHERVRCLGLDKDVPVATALVNLYGKCGRLEEAEAVFLGMKKKNLLTWTSIA 494
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL----------GT 310
A+ ++G +L LL + + +KP+ + V++L +C + +GL G
Sbjct: 495 MAYGQNGHGSRSLKLLHGMELQGMKPDGIVFVAILVSCNYAGQMSKGLHYYNLMTQDFGI 554
Query: 311 GSFVWN--ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
V + ++D+ GR G ++ + ++ M ++ ++W ++++
Sbjct: 555 APAVEHCGCMVDILGRAGKLEAAEQLINTMKFESSLAWMMLLTA 598
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 95/196 (48%), Gaps = 34/196 (17%)
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----------------IHLS 232
M ++Q + + +L AC+ ++ + GK +HG V+R I +
Sbjct: 1 MEAREIQAEISACAAILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMY 60
Query: 233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
CG + VF+++ ++VV W S+ISAF +G DA+ L R ++++ V P+ +T
Sbjct: 61 LRCGCTDLALDVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFT 120
Query: 293 SVLPACLKLAALPQGLGTGS---------------FVWNALIDMYGRCGAIQKSRKIFVL 337
S+L LK + + L G V N +++MYG+CG ++++ +F
Sbjct: 121 SIL---LKWSGRERNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDS 177
Query: 338 MPHKNLVSWNVMISVY 353
+ N+ SW ++I+ Y
Sbjct: 178 IQDPNVFSWTIIIAAY 193
>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
Length = 645
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 159/333 (47%), Gaps = 70/333 (21%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W ++ Y G ++ ++L++ M+ GVRP+ + P V KACS L G +++ +
Sbjct: 77 WNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHA- 135
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
K G ++ D V +L+DFYAKC L +
Sbjct: 136 --KMFG---------------------------LESDVFVCTALVDFYAKCGILVEAQRL 166
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
FS + +D+V+WNAM+AG +L G ++ L+ M+M + + PN+ ++ GVL C +
Sbjct: 167 FSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLI--MQMQEEGICPNSSTIVGVLPTCQCLL 224
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
+ +F+ + R+ V W+++I +V S + +A
Sbjct: 225 YAR---------------------------KIFDVMGVRNEVSWSAMIGGYVASDCMKEA 257
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNALIDM 321
LD+ R + ++ + P+ T++ VLPAC LAAL +G T + + NALIDM
Sbjct: 258 LDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDM 317
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
Y +CG I +R++F M ++VSWN MI YG
Sbjct: 318 YSKCGKISFAREVFNRMDRHDIVSWNAMIIGYG 350
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 25/176 (14%)
Query: 204 VLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRD 252
+L AC Q K + K IH + L++ L +C V+ + +F+++
Sbjct: 14 LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------ 306
V++WN II A+ +G A+DL ++ V+PN T VL AC L A+
Sbjct: 74 VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133
Query: 307 -----GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI---SVYG 354
GL + FV AL+D Y +CG + +++++F M H+++V+WN MI S+YG
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYG 189
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 110/250 (44%), Gaps = 49/250 (19%)
Query: 124 EEMDQDFLVNNS---------LIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALG 174
+++ Q FL N S L Y C + ++ F +I ++ WN ++ YA
Sbjct: 28 KKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWN 87
Query: 175 GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIH 230
G + +L M+ ++PN + VL AC+ + ++ G IH + L +
Sbjct: 88 GPFDGAIDLYH--SMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVF 145
Query: 231 LSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283
+ TA CG ++ + +F+ +S RDVV WN++I+ G DA+ L+ +
Sbjct: 146 VCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEG 205
Query: 284 VKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
+ PN+ TIV VLP C L +Y +RKIF +M +N
Sbjct: 206 ICPNSSTIVGVLPTCQCL-------------------LY--------ARKIFDVMGVRNE 238
Query: 344 VSWNVMISVY 353
VSW+ MI Y
Sbjct: 239 VSWSAMIGGY 248
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 32/187 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W++M+G Y +E +++F +M G+ PD V ACS L + G + Y+
Sbjct: 240 SWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYL 299
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I F D L+ N+LID Y+KC + +
Sbjct: 300 IVRGFA------------------------------TDTLICNALIDMYSKCGKISFARE 329
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+++ + D+VSWNAM+ GY + G E L +++ ++P+ I+ +L++C+
Sbjct: 330 VFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFH--DLLALGLKPDDITFICLLSSCSHS 387
Query: 212 KGVKLGK 218
V G+
Sbjct: 388 GLVMEGR 394
>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
Length = 761
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 87/328 (26%), Positives = 163/328 (49%), Gaps = 21/328 (6%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G EE++ LF M++ G+ PD V ACS D + + +
Sbjct: 227 SWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTL 286
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD--QDFLVNNSLIDFYAKCRYLKVS 149
+ + N V+ LLD++ KCG + +F+E+ ++ + N++I Y + L +
Sbjct: 287 HQKQIQLNCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSA 346
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F+ + +++V+WN+M+AGYA G L EM + + P+ +++ V++AC
Sbjct: 347 RELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEM-ITAKKLTPDEVTMVSVISACG 405
Query: 210 QVKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNS 258
+ ++LG + ++ + I LS + CG + + VF +++TRDVV +N+
Sbjct: 406 HLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNT 465
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNAL 318
+IS F G V+A++L+ + ++P+ VT + VL AC L +G + +
Sbjct: 466 LISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPA 525
Query: 319 IDMY-------GRCGAIQKSRKIFVLMP 339
ID Y GR G ++ +++ MP
Sbjct: 526 IDHYACMVDLLGRVGELEDAKRTMERMP 553
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 100/410 (24%), Positives = 188/410 (45%), Gaps = 96/410 (23%)
Query: 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS 93
TSM+ Y+ L + ++V +F M GVRPD FV P + K+ G + +++
Sbjct: 69 TSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGN-----GGIGFHAHVLK 123
Query: 94 IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM--------------------------- 126
+ +A V+ ++D++ + G + +F+E+
Sbjct: 124 LGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQ 183
Query: 127 -------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREE 179
+++ + +++ YAK + L+ + F + ++ +VSWNAML+GYA G EE
Sbjct: 184 WLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEE 243
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK----GVKLGKAIHGYVLRHHIHLSTA- 234
V L DEM + ++P+ + V++AC+ L + +H ++ + + TA
Sbjct: 244 VLRLFDEM--VNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTAL 301
Query: 235 ------CGFVICSCSVFNQLST--------------------------------RDVVVW 256
CG + + +F++L R+VV W
Sbjct: 302 LDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTW 361
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPACLKLAALPQGLGTGSFV- 314
NS+I+ + ++GQ A++L +++I A + P+ VT+VSV+ AC L AL G F+
Sbjct: 362 NSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLT 421
Query: 315 ----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
NA+I MY RCG+++ ++++F M +++VS+N +IS +
Sbjct: 422 ENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFA 471
>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
mitochondrial [Vitis vinifera]
gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
Length = 700
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 103/344 (29%), Positives = 163/344 (47%), Gaps = 54/344 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WTSM+ Y +E + LF M + V + + + AC++L GK V+ Y+I
Sbjct: 206 WTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVI 265
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F+ N+ + PLLDL Y KC ++ +
Sbjct: 266 KSGFDLNSFLVTPLLDL------------------------------YFKCGDIRDAFSV 295
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ DLVSW AM+ GYA G+ E L + D+ PNT++ S VL+ACAQ
Sbjct: 296 FDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERW--KDLLPNTVTTSSVLSACAQTG 353
Query: 213 GVKLGKAIH--GYVLRHH--------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISA 262
+ +G+++H G L + + C + + VF + +DV+ WNSIIS
Sbjct: 354 SLNMGRSVHCLGIKLGSEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISG 413
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTG 311
+ ++G +AL+L + +V P+ +T+VSVL AC + A+ GL +G
Sbjct: 414 YTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSG 473
Query: 312 S-FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
S +V AL++ Y +CG + +R IF M KN ++W+ MI YG
Sbjct: 474 SVYVGTALLNFYAKCGDAESARVIFDEMGEKNTITWSAMIGGYG 517
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 164/344 (47%), Gaps = 55/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRP-DHFVCPKVYKACSELKDYRVGKDVYDY 90
+W M+ Y + Y EIV + + K + D+ V V KACSEL++ G+ ++
Sbjct: 104 SWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKLH-- 161
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
C +++ S D V L+D YAKCR ++ S
Sbjct: 162 ----------------------CQIVKVGS-------PDSFVLTGLVDMYAKCREVEDSR 192
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F +I +++V W +M+ GY +E L + M + ++ N +L ++ AC +
Sbjct: 193 RVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMR--EGLVEGNQYTLGSLVTACTK 250
Query: 211 VKGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSI 259
+ + GK +HGYV++ L++ CG + + SVF++LST D+V W ++
Sbjct: 251 LGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAM 310
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LGT 310
I + + G +AL L D ++ PNTVT SVL AC + +L G LG+
Sbjct: 311 IVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGS 370
Query: 311 GSFVW-NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ NAL+DMY +C I +R +F + K++++WN +IS Y
Sbjct: 371 EDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGY 414
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/387 (23%), Positives = 170/387 (43%), Gaps = 78/387 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNV 42
G VH ++I G +L +FL + LL+++ +WT+M+ Y
Sbjct: 257 GKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQ 316
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
GY E + LF K + P+ V AC++ +G+ V+ C
Sbjct: 317 RGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVH------------C- 363
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L IK G +D N+L+D YAKC + + F + KD++
Sbjct: 364 ------LGIKLG------------SEDATFENALVDMYAKCHMIGDARYVFETVFDKDVI 405
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+WN++++GY G+ E L D+M + P+ I+L VL+ACA V ++G ++HG
Sbjct: 406 AWNSIISGYTQNGYAYEALELFDQMR--SDSVYPDAITLVSVLSACASVGAYRVGSSLHG 463
Query: 223 YVLRH-----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y ++ +++ TA CG + +F+++ ++ + W+++I + G
Sbjct: 464 YAIKAGLLSGSVYVGTALLNFYAKCGDAESARVIFDEMGEKNTITWSAMIGGYGIQGDCS 523
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---LGTGSFVWN---------AL 318
+L+L D++ ++PN V ++L AC L +G T V+N +
Sbjct: 524 RSLELFGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQVYNFVPSMKHYACM 583
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVS 345
+D+ R G ++++ +P + VS
Sbjct: 584 VDLLARAGRLEEALDFIEKIPIQPDVS 610
>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 166/347 (47%), Gaps = 58/347 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ ++ G+ ++ + L M D+G RPD V A +++ VGK ++ Y
Sbjct: 215 SWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYA 274
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN--NSLIDFYAKCRYLKVS 149
I F LVN +L D Y+KC ++ +
Sbjct: 275 IRAGFAK--------------------------------LVNISTALADMYSKCGSVETA 302
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + QK +VSWN+M+ GY G E+ + ++M ++ + P +++ L ACA
Sbjct: 303 RLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKM--LEEGIDPTGVTIMEALHACA 360
Query: 210 QVKGVKLGKAIHGYV-----------LRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ ++ GK +H +V + I + + C V + +FN L+ R V WN+
Sbjct: 361 DLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNA 420
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------- 307
+I + ++G+V +AL+ ++ +KP++ T+VSV+PA +L+
Sbjct: 421 MILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSC 480
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L FV AL+DMY +CGAI +RK+F ++ +++++WN MI YG
Sbjct: 481 LDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYG 527
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/316 (27%), Positives = 153/316 (48%), Gaps = 54/316 (17%)
Query: 61 VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITS 120
V+P + + K C + D + GK+++ +I+ F N +F G
Sbjct: 143 VKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAAN---------VFAMTG------ 187
Query: 121 GLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEV 180
+++ YAKCR + ++ F ++ ++DLVSWN ++AG++ GF ++
Sbjct: 188 ---------------VVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKA 232
Query: 181 TNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----IHLSTA-- 234
L+ + M +P++I+L VL A A V + +GK+IHGY +R +++STA
Sbjct: 233 LELV--LRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALA 290
Query: 235 -----CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289
CG V + +F+ + + VV WNS++ +V++G+ A+ + ++ + P V
Sbjct: 291 DMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGV 350
Query: 290 TIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLM 338
TI+ L AC L L +G LG+ V N+LI MY +C + + IF +
Sbjct: 351 TIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNL 410
Query: 339 PHKNLVSWNVMISVYG 354
+ VSWN MI Y
Sbjct: 411 NGRTHVSWNAMILGYA 426
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 152/331 (45%), Gaps = 55/331 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SMM Y G E+ + +F M+++G+ P + AC++L D GK V+ ++
Sbjct: 316 SWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFV 375
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + D V NSLI Y+KC+ + ++
Sbjct: 376 DQLN------------------------------LGSDISVMNSLISMYSKCKRVDIASD 405
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ + + VSWNAM+ GYA G E N EM+ + M+P++ ++ V+ A A++
Sbjct: 406 IFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSL--GMKPDSFTMVSVIPALAEL 463
Query: 212 KGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ K IHG ++R +I ++TA CG + + +F+ +S R V+ WN++I
Sbjct: 464 SVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMI 523
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
+ G ALDL + V+PN +T +SV+ AC + +GL +
Sbjct: 524 DGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGL 583
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMP 339
+ A++D+ GR G I+++ MP
Sbjct: 584 EPSMDHYGAMVDLLGRAGRIKEAWDFIENMP 614
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 111/267 (41%), Gaps = 54/267 (20%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G E +N F M G++PD F V A +EL R K ++ +
Sbjct: 417 SWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLI 476
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I +C +D++ V +L+D Y+KC + ++
Sbjct: 477 I------RSC------------------------LDKNIFVTTALVDMYSKCGAIHMARK 506
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F I + +++WNAM+ GY G +L D+M+ + ++PN I+ V++AC+
Sbjct: 507 LFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMK--KGAVEPNDITYLSVISACSHS 564
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V G LRH + G + + +++ R+G++ +
Sbjct: 565 GLVDEG-------LRHFKSMKQDYGL------------EPSMDHYGAMVDLLGRAGRIKE 605
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPAC 298
A D + ++ ++ P ++L AC
Sbjct: 606 AWDFIENMPIS---PGITVYGAMLGAC 629
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 11/134 (8%)
Query: 229 IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288
+ L + G + + VF + + ++++++ + ++ + AL L + +VKP
Sbjct: 88 VSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVV 147
Query: 289 VTIVSVLPACLKLAALPQG------LGTGSFVWN-----ALIDMYGRCGAIQKSRKIFVL 337
+L C A L +G L T SF N +++MY +C I + K+F
Sbjct: 148 YNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDR 207
Query: 338 MPHKNLVSWNVMIS 351
MP ++LVSWN +I+
Sbjct: 208 MPERDLVSWNTIIA 221
>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 166/347 (47%), Gaps = 58/347 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ ++ G+ ++ + L M D+G RPD V A +++ VGK ++ Y
Sbjct: 215 SWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYA 274
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN--NSLIDFYAKCRYLKVS 149
I F LVN +L D Y+KC ++ +
Sbjct: 275 IRAGFAK--------------------------------LVNISTALADMYSKCGSVETA 302
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + QK +VSWN+M+ GY G E+ + ++M ++ + P +++ L ACA
Sbjct: 303 RLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKM--LEEGIDPTGVTIMEALHACA 360
Query: 210 QVKGVKLGKAIHGYV-----------LRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ ++ GK +H +V + I + + C V + +FN L+ R V WN+
Sbjct: 361 DLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNA 420
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------- 307
+I + ++G+V +AL+ ++ +KP++ T+VSV+PA +L+
Sbjct: 421 MILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSC 480
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L FV AL+DMY +CGAI +RK+F ++ +++++WN MI YG
Sbjct: 481 LDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYG 527
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/316 (27%), Positives = 153/316 (48%), Gaps = 54/316 (17%)
Query: 61 VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITS 120
V+P + + K C + D + GK+++ +I+ F N +F G
Sbjct: 143 VKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAAN---------VFAMTG------ 187
Query: 121 GLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEV 180
+++ YAKCR + ++ F ++ ++DLVSWN ++AG++ GF ++
Sbjct: 188 ---------------VVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKA 232
Query: 181 TNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----IHLSTA-- 234
L+ + M +P++I+L VL A A V + +GK+IHGY +R +++STA
Sbjct: 233 LELV--LRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALA 290
Query: 235 -----CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289
CG V + +F+ + + VV WNS++ +V++G+ A+ + ++ + P V
Sbjct: 291 DMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGV 350
Query: 290 TIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLM 338
TI+ L AC L L +G LG+ V N+LI MY +C + + IF +
Sbjct: 351 TIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNL 410
Query: 339 PHKNLVSWNVMISVYG 354
+ VSWN MI Y
Sbjct: 411 NGRTHVSWNAMILGYA 426
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 152/331 (45%), Gaps = 55/331 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SMM Y G E+ + +F M+++G+ P + AC++L D GK V+ ++
Sbjct: 316 SWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFV 375
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + D V NSLI Y+KC+ + ++
Sbjct: 376 DQLN------------------------------LGSDISVMNSLISMYSKCKRVDIASD 405
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ + + VSWNAM+ GYA G E N EM+ + M+P++ ++ V+ A A++
Sbjct: 406 IFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSL--GMKPDSFTMVSVIPALAEL 463
Query: 212 KGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ K IHG ++R +I ++TA CG + + +F+ +S R V+ WN++I
Sbjct: 464 SVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMI 523
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
+ G ALDL + V+PN +T +SV+ AC + +GL +
Sbjct: 524 DGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGL 583
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMP 339
+ A++D+ GR G I+++ MP
Sbjct: 584 EPSMDHYGAMVDLLGRAGRIKEAWDFIENMP 614
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 11/134 (8%)
Query: 229 IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288
+ L + G + + VF + + ++++++ + ++ + AL L + +VKP
Sbjct: 88 VSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVV 147
Query: 289 VTIVSVLPACLKLAALPQG------LGTGSFVWN-----ALIDMYGRCGAIQKSRKIFVL 337
+L C A L +G L T SF N +++MY +C I + K+F
Sbjct: 148 YNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDR 207
Query: 338 MPHKNLVSWNVMIS 351
MP ++LVSWN +I+
Sbjct: 208 MPERDLVSWNTIIA 221
>gi|357468777|ref|XP_003604673.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
gi|355505728|gb|AES86870.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
Length = 838
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 168/349 (48%), Gaps = 58/349 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLM-----IDKGVRPDHFVCPKVYKACSELKDYRVGKDV 87
W +++ Y G + E ++LF M + RPD++ K+C+ L+ +GK +
Sbjct: 205 WNALLRSYCFEGEWVETLSLFRQMNNVSSVSIEERPDNYSVSIALKSCAGLRKLLLGKVI 264
Query: 88 YDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147
+ ++ ++ +G D V ++LID Y KC +
Sbjct: 265 HGFLKKVRIDG------------------------------DMFVGSALIDLYTKCGQMN 294
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
+ F + + D+V W ++++GY G E M ++ + P+ ++L V +A
Sbjct: 295 DAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRM-VVSEKVSPDPVTLVSVASA 353
Query: 208 CAQVKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVW 256
CAQ+ KLG+++HG+V R + HL G + + ++F ++S +D++ W
Sbjct: 354 CAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREMSDKDIISW 413
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN 316
+++++ + +G D LDL +++ +KPN VT+VSVL AC ++ L +G+ N
Sbjct: 414 STMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRACACISNLEEGMKIHELAVN 473
Query: 317 -----------ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
AL+DMY +C + +K+ +F MP K++++W V+ S Y
Sbjct: 474 YGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDVIAWAVLFSGYA 522
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/396 (23%), Positives = 182/396 (45%), Gaps = 76/396 (19%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYN 41
LG +H L ++ F+GS L++++ WTS++ Y
Sbjct: 260 LGKVIHGFLKKVRIDGDMFVGSALIDLYTKCGQMNDAVKVFMEYPKPDVVLWTSIISGYE 319
Query: 42 VLGYYEEIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G E + F M+ + V PD V AC++L ++++G+ V+ +
Sbjct: 320 QSGSPELALAFFSRMVVSEKVSPDPVTLVSVASACAQLSNFKLGRSVHGF---------- 369
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
VKR + +D + NSL+ Y K +K + F ++ KD
Sbjct: 370 -VKR-------------------KGLDNKLCLANSLLHLYGKTGSIKNASNLFREMSDKD 409
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
++SW+ M+A YA G +V +L +EM + ++PN +++ VL ACA + ++ G I
Sbjct: 410 IISWSTMVACYADNGAETDVLDLFNEM--LDKRIKPNWVTVVSVLRACACISNLEEGMKI 467
Query: 221 HGYVLRHHIHLSTACG------FVIC-----SCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H + + + T ++ C + +FN++ +DV+ W + S + +G V
Sbjct: 468 HELAVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDVIAWAVLFSGYADNGMV 527
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNAL 318
+++ + R+++ + +P+ + +V +L +L L Q G F+ +L
Sbjct: 528 HESMWVFRNMLSSGTRPDAIALVKILTTISELGILQQAVCLHAFVIKNGFENNQFIGASL 587
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
I++Y +C +I+ + K+F M +K++V+W+ +I+ YG
Sbjct: 588 IEVYAKCSSIEDANKVFKGMTYKDVVTWSSIIAAYG 623
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 122/253 (48%), Gaps = 26/253 (10%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
D + L YA+ + +H F + + + WNA+L Y G E +L +M
Sbjct: 169 HDSFIVTKLNVLYARYASIHHAHKLFQETPHRTVYLWNALLRSYCFEGEWVETLSLFRQM 228
Query: 188 EMIQT---DMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLST 233
+ + + +P+ S+S L +CA ++ + LGK IHG++ + I L T
Sbjct: 229 NNVSSVSIEERPDNYSVSIALKSCAGLRKLLLGKVIHGFLKKVRIDGDMFVGSALIDLYT 288
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL-RDVIVANVKPNTVTIV 292
CG + + VF + DVV+W SIIS + +SG AL R V+ V P+ VT+V
Sbjct: 289 KCGQMNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLV 348
Query: 293 SVLPACLKLAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHK 341
SV AC +L+ G FV N+L+ +YG+ G+I+ + +F M K
Sbjct: 349 SVASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREMSDK 408
Query: 342 NLVSWNVMISVYG 354
+++SW+ M++ Y
Sbjct: 409 DIISWSTMVACYA 421
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/332 (22%), Positives = 149/332 (44%), Gaps = 56/332 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W++M+ Y G ++++LF M+DK ++P+ V +AC+ + + G +++
Sbjct: 412 SWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRACACISNLEEGMKIHELA 471
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
++ FE V L+D+++KC E L
Sbjct: 472 VNYGFEMETTVSTALMDMYMKCFSPEKAVDL----------------------------- 502
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+++ +KD+++W + +GYA G E + M+ + +P+ I+L +L +++
Sbjct: 503 -FNRMPKKDVIAWAVLFSGYADNGMVHESMWVF--RNMLSSGTRPDAIALVKILTTISEL 559
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ +H +V+++ I + C + + VF ++ +DVV W+SII
Sbjct: 560 GILQQAVCLHAFVIKNGFENNQFIGASLIEVYAKCSSIEDANKVFKGMTYKDVVTWSSII 619
Query: 261 SAFVRSGQVVDALDLLRDVIV-ANVKPNTVTIVSVLPACLKLAALPQG------------ 307
+A+ GQ +AL L + ++ KPN VT +S+L AC + +G
Sbjct: 620 AAYGFHGQGEEALKLFYQMANHSDTKPNNVTFISILSACSHSGLIKEGINMFDIMVNKYK 679
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
L S + ++D+ GR G + + + MP
Sbjct: 680 LKPNSEHYAIMVDLLGRMGELDMALDVINNMP 711
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 95/238 (39%), Gaps = 52/238 (21%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+E G+++H + G E+ + + L++++ W +
Sbjct: 461 LEEGMKIHELAVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDVIAWAVLFSG 520
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G E + +F M+ G RPD K+ SEL + ++ ++I FE N
Sbjct: 521 YADNGMVHESMWVFRNMLSSGTRPDAIALVKILTTISELGILQQAVCLHAFVIKNGFENN 580
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ SLI+ YAKC ++ ++ F + K
Sbjct: 581 Q------------------------------FIGASLIEVYAKCSSIEDANKVFKGMTYK 610
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
D+V+W++++A Y G EE L +M +D +PN ++ +L+AC+ +K G
Sbjct: 611 DVVTWSSIIAAYGFHGQGEEALKLFYQMAN-HSDTKPNNVTFISILSACSHSGLIKEG 667
>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g68930-like [Cucumis
sativus]
Length = 695
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 101/366 (27%), Positives = 179/366 (48%), Gaps = 62/366 (16%)
Query: 47 EEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPL 106
+E + LF M +G P + + A ++L D R GK ++ +I F GN + L
Sbjct: 137 QESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNAL 196
Query: 107 LDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAK----------------------- 142
D++ KCG +E LF+ + + LV+ N +I YAK
Sbjct: 197 TDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQ 256
Query: 143 ----------CRYLKVSHCK--FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
C+ +V + FS+ K+KD+V W AM+ GYA G E+ L +EM +
Sbjct: 257 VTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEM--L 314
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVI 239
++P++ +LS V+++CA++ + G+A+HG L +++ +S+A CGF+
Sbjct: 315 LEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFID 374
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ SVFN + TR+VV WN++I ++G DAL+L +++ KP+ VT + +L ACL
Sbjct: 375 DARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACL 434
Query: 300 KLAALPQGLGTGSFVWNA------------LIDMYGRCGAIQKSRKIFVLMPHK-NLVSW 346
+ QG + N ++++ GR G I+++ + M H + + W
Sbjct: 435 HCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIW 494
Query: 347 NVMISV 352
+ ++S+
Sbjct: 495 STLLSI 500
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 122/261 (46%), Gaps = 38/261 (14%)
Query: 106 LLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
LL L+ K G++ LF++M +D N+L+ YAK ++ F ++ +D VS+
Sbjct: 64 LLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSY 123
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
N +AG++ +E L M+ + +P ++ +L A AQ+ ++ GK IHG +
Sbjct: 124 NTTIAGFSGNSCPQESLELFKRMQ--REGFEPTEYTIVSILNASAQLLDLRYGKQIHGSI 181
Query: 225 LRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
+ + + CG + + +F+ L+ +++V WN +IS + ++GQ +
Sbjct: 182 IVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCI 241
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRK 333
LL + ++ P+ VT+ +++ A Y +CG + ++R+
Sbjct: 242 GLLHQMRLSGHMPDQVTMSTIIAA------------------------YCQCGRVDEARR 277
Query: 334 IFVLMPHKNLVSWNVMISVYG 354
+F K++V W M+ Y
Sbjct: 278 VFSEFKEKDIVCWTAMMVGYA 298
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 119/263 (45%), Gaps = 50/263 (19%)
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
R +DL C R TS + ++ + + N + + + L+ SH + + D
Sbjct: 8 RQSVDLL--CSRSTATSEAYTQLVLECVRTNEI----NQAKRLQ-SHMEHHLFQPTDSFL 60
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
N +L YA G + NL D+M ++ + S + +L+A A+ ++ KA
Sbjct: 61 HNQLLHLYAKFGKLRDAQNLFDKM------LKRDXFSWNALLSAYAKSGSIQNLKA---- 110
Query: 224 VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283
F+++ RD V +N+ I+ F + ++L+L + +
Sbjct: 111 --------------------TFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREG 150
Query: 284 VKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNALIDMYGRCGAIQKS 331
+P TIVS+L A +L L G LG F+WNAL DMY +CG I+++
Sbjct: 151 FEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGN-VFIWNALTDMYAKCGEIEQA 209
Query: 332 RKIFVLMPHKNLVSWNVMISVYG 354
R +F + KNLVSWN+MIS Y
Sbjct: 210 RWLFDCLTKKNLVSWNLMISGYA 232
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 105/253 (41%), Gaps = 45/253 (17%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT+MM Y G E+ + LF M+ + + PD + V +C++L G+ V+ I
Sbjct: 290 WTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSI 349
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
N V L+D++ KCG ++ +F M
Sbjct: 350 LAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLM-------------------------- 383
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
+++VSWNAM+ G A G ++ L + M+Q +P+ ++ G+L+AC
Sbjct: 384 ----PTRNVVSWNAMIVGCAQNGHDKDALELFE--NMLQQKFKPDNVTFIGILSACLHCN 437
Query: 213 GVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVF-NQLSTRDVVVWNSI 259
++ G+ + H ++L G + + ++ N D ++W+++
Sbjct: 438 WIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTL 497
Query: 260 ISAFVRSGQVVDA 272
+S G +V+A
Sbjct: 498 LSICSTKGDIVNA 510
>gi|357507465|ref|XP_003624021.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499036|gb|AES80239.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 632
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 165/332 (49%), Gaps = 24/332 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W +M+ Y G EE + LF M+ G V+PD V +CS L D + + +
Sbjct: 218 SWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRK 277
Query: 91 MIS-IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD----QDFLVNNSLIDFYAKCRY 145
+ + F N VK LLD+ KCG +E +FE++ + + N++I YA+
Sbjct: 278 LDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGD 337
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
L + F K+ Q+D VSWN+M+AGY G + L +EM + +P+ +++ V
Sbjct: 338 LPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVF 397
Query: 206 AACAQVKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVV 254
+AC + + LG + +HI +S + CG + + +F +++TRD+V
Sbjct: 398 SACGHLGELGLGNWAVSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMATRDLV 457
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV 314
+N++IS F G +++++LL + ++P+ +T +++L AC L +G +
Sbjct: 458 SYNTLISGFAEHGHGMESIELLSKMKEDGIEPDRITYIAILTACSHAGLLDEGQRLFESI 517
Query: 315 -------WNALIDMYGRCGAIQKSRKIFVLMP 339
+ +IDM GR G ++++ K+ MP
Sbjct: 518 KFPDVDHYACMIDMLGRAGRLEEAMKLIQSMP 549
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 149/311 (47%), Gaps = 69/311 (22%)
Query: 110 FIKCGRMEITSGLF-----EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
+ KCG E S LF +E+ ++ + ++I +AK LK + F K+ ++ +VSW
Sbjct: 160 YWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSW 219
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI---- 220
NAML+GYA GG EE L ++M + ++QP+ + + V+++C+ + L ++I
Sbjct: 220 NAMLSGYAQGGAPEETIRLFNDM-LSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKL 278
Query: 221 --------HGYVLRHHIHLSTACGFVICSCSVFNQL------------------------ 248
+ +V + + CG + + +F QL
Sbjct: 279 DDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDL 338
Query: 249 ----------STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA--NVKPNTVTIVSVLP 296
RD V WNS+I+ + ++G+ A+ L ++I + + KP+ VT+VSV
Sbjct: 339 PSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFS 398
Query: 297 ACLKLAALPQGLGTGSF-------------VWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
AC L L GLG + V+N+LI+MY RCG++Q + IF M ++L
Sbjct: 399 ACGHLGEL--GLGNWAVSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMATRDL 456
Query: 344 VSWNVMISVYG 354
VS+N +IS +
Sbjct: 457 VSYNTLISGFA 467
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 109/244 (44%), Gaps = 42/244 (17%)
Query: 127 DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDE 186
D+D V N ++ YAK ++ + F ++ + + WN M++GY G EE + L
Sbjct: 116 DRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHV 175
Query: 187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFN 246
M ++ N I+ + ++ A+ +K + F+
Sbjct: 176 MG--DQEISRNVITWTTMITGHAKKGNLKTARM------------------------YFD 209
Query: 247 QLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV-ANVKPNTVTIVSVLPACLKLAA-- 303
++ R VV WN+++S + + G + + L D++ NV+P+ T +V+ +C L
Sbjct: 210 KMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPC 269
Query: 304 LPQ----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLM---PHKNLVSWNVMI 350
L + G FV AL+DM+ +CG ++ + KIF + +++ V WN MI
Sbjct: 270 LSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMI 329
Query: 351 SVYG 354
S Y
Sbjct: 330 SAYA 333
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 14/124 (11%)
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSG---QVVDALDLLRDVIVA-NVKPNTVTIVSVL- 295
+C +F+ + DV V+ ++ + + G QV + L + ++ ++KPN + SV+
Sbjct: 40 TCHIFHAATHPDVRVFTFMLKYYSQIGVHSQVF--VSLFKHMLQHCDIKPN-ASFYSVMM 96
Query: 296 -----PACLKLA-ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
+ L LA L G +V N ++ +Y + G I+ +RK+F MP + + WNVM
Sbjct: 97 KSAGSESMLFLAHVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVM 156
Query: 350 ISVY 353
IS Y
Sbjct: 157 ISGY 160
>gi|357481301|ref|XP_003610936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512271|gb|AES93894.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 812
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 101/401 (25%), Positives = 191/401 (47%), Gaps = 53/401 (13%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G Q+HAH+I G+ L S+L+ + +W ++ +Y
Sbjct: 111 GKQIHAHIISLGIHQNPILVSKLINFYASVDLLADAQIVAECSNSFDPLHWNMVISLYVK 170
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+E+ ++++ M+ KGV PD + P V KAC EL DY G V+ + + + V
Sbjct: 171 NCLFEDAISVYRRMLSKGVIPDDYTYPSVLKACGELLDYDSGVAVHKAIQESSIKWSLFV 230
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKC----RYLKVSHCKFSKIK 157
L+ ++ + G++E+ LF+ M +D + N++I YA ++ C
Sbjct: 231 HNALVFMYGRFGKLEVARELFDIMPARDDVSWNTMISCYASRGLWDEAFRLFGCMREAGI 290
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+++++ WN + G G + L +M + +Q +++++ L AC+ + VKLG
Sbjct: 291 ERNIIIWNTIAGGCLHTGNFKGALKLFSQMRAV---IQLDSVAMVVGLNACSHIGAVKLG 347
Query: 218 KAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
K IHG+ +R I + + C + + +F ++ + ++ WN+++S F
Sbjct: 348 KEIHGHAVRTCFDVFDNVKNTLITMYSRCRDLNHAYLLFRKIDEKGLITWNAMLSGFAHM 407
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------------- 313
+ + LLR+++ V+PN VTI S+LP C ++A L G +
Sbjct: 408 DRSEEVSFLLREMLREGVEPNYVTIASILPLCARIANLQHGKEFHCYMVKREEQFKGYLL 467
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+WN+L++MY R G + ++RK+F + K+ V++ MI YG
Sbjct: 468 LWNSLVEMYSRSGKVLEARKVFDSLSRKDEVTYTSMIMGYG 508
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 172/353 (48%), Gaps = 40/353 (11%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G ++E LF M + G+ + + + C +++ ++ M
Sbjct: 261 SWNTMISCYASRGLWDEAFRLFGCMREAGIERNIIIWNTIAGGCLHTGNFKGALKLFSQM 320
Query: 92 IS-IKFEG-------NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKC 143
+ I+ + NAC + L + + + F+ D V N+LI Y++C
Sbjct: 321 RAVIQLDSVAMVVGLNACSHIGAVKLGKEIHGHAVRT-CFDVFDN---VKNTLITMYSRC 376
Query: 144 RYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSG 203
R L ++ F KI +K L++WNAML+G+A EEV+ LL EM++ ++PN ++++
Sbjct: 377 RDLNHAYLLFRKIDEKGLITWNAMLSGFAHMDRSEEVSFLL--REMLREGVEPNYVTIAS 434
Query: 204 VLAACAQVKGVKLGKAIHGYVLRHH-------------IHLSTACGFVICSCSVFNQLST 250
+L CA++ ++ GK H Y+++ + + + G V+ + VF+ LS
Sbjct: 435 ILPLCARIANLQHGKEFHCYMVKREEQFKGYLLLWNSLVEMYSRSGKVLEARKVFDSLSR 494
Query: 251 RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG--- 307
+D V + S+I + SG AL L ++ N+KP+ VT+V+VL AC + QG
Sbjct: 495 KDEVTYTSMIMGYGVSGDGETALKLFAEMRRLNIKPDHVTMVAVLIACSHSGLVAQGQVL 554
Query: 308 -------LGTGSFV--WNALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMI 350
G V ++ ++D++GR G + K++++ M K + W +I
Sbjct: 555 FRKMIEVYGIDPRVEHYSCMVDLFGRAGLLDKAKEVITGMSCKPTSAIWATLI 607
>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
Length = 705
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 167/328 (50%), Gaps = 34/328 (10%)
Query: 50 VNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDL 109
+N + M + D F+ P V KACS++ R+GK+++ + + + V L+ +
Sbjct: 94 LNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQM 153
Query: 110 FIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAML 168
+ +CG + LF++M ++D + +++I Y F Q+ +VSW AM+
Sbjct: 154 YSECGSLVSARLLFDKMSERDVVSWSTMIRAYITL---------FYGFSQRSIVSWTAMI 204
Query: 169 AGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH 228
AGY EE L + MI+ ++ PN I++ ++ +C V V+LGK +H Y+LR+
Sbjct: 205 AGYIRCNDLEEGERLF--VRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNG 262
Query: 229 IHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLR 277
+S A CG + + ++F+ + +DV+ W ++ISA+ ++ + A L
Sbjct: 263 FGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFV 322
Query: 278 DVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWNALIDMYGRCG 326
+ V+PN +T+VS+L C AL QG+ + ALIDMY +CG
Sbjct: 323 QMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCG 382
Query: 327 AIQKSRKIFVLMPHKNLVSWNVMISVYG 354
I ++++F +++ +WNVM++ YG
Sbjct: 383 DISGAQRLFSEAIDRDICTWNVMMAGYG 410
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/345 (22%), Positives = 146/345 (42%), Gaps = 56/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ Y EE LF MI++ V P+ + +C + ++GK ++ Y+
Sbjct: 199 SWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYI 258
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F + +L+D Y KC ++ +
Sbjct: 259 LRNGF------------------------------GMSLALATALVDMYGKCGEIRSARA 288
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +K KD+++W AM++ YA + L ++M ++PN +++ +L+ CA
Sbjct: 289 IFDSMKNKDVMTWTAMISAYAQANCIDYAFQLF--VQMRDNGVRPNELTMVSLLSLCAVN 346
Query: 212 KGVKLGKAIHGYVLRHHIH----LSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ +GK H Y+ + + L TA CG + + +F++ RD+ WN ++
Sbjct: 347 GALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMM 406
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
+ + G AL L ++ VKPN +T + L AC + +G G +
Sbjct: 407 AGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGL 466
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ ++D+ GR G + ++ K+ MP N+ W M++
Sbjct: 467 VPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAA 511
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 101/241 (41%), Gaps = 53/241 (21%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
++LG ++HA+++ G + L + L++++ WT+M+
Sbjct: 248 VQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISA 307
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y + LF M D GVRP+ + C+ +GK + Y I +G
Sbjct: 308 YAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAY---IDKQG- 363
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
++ D ++ +LID YAKC + + FS+ +
Sbjct: 364 --------------------------VEVDVILKTALIDMYAKCGDISGAQRLFSEAIDR 397
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+ +WN M+AGY + G+ E+ L EME + ++PN I+ G L AC+ V GK
Sbjct: 398 DICTWNVMMAGYGMHGYGEKALKLFTEMETL--GVKPNDITFIGALHACSHAGLVVEGKG 455
Query: 220 I 220
+
Sbjct: 456 L 456
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 30/152 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
+++G HA++ GVE+ L + L++++ C W MM
Sbjct: 349 LDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAG 408
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS-----I 94
Y + GY E+ + LF M GV+P+ ACS GK +++ MI
Sbjct: 409 YGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVP 468
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126
K E C ++DL + G ++ + E M
Sbjct: 469 KVEHYGC----MVDLLGRAGLLDEAYKMIESM 496
>gi|326507322|dbj|BAJ95738.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 593
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 93/327 (28%), Positives = 163/327 (49%), Gaps = 24/327 (7%)
Query: 46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP 105
+ +++ F M KG P V+K+C+ G+ V+ + + G+ V
Sbjct: 51 HHDLLQTFSSMHRKGAYVPSGCVPLVFKSCALTASSCQGRQVHCHALVRGLLGDVFVLTA 110
Query: 106 LLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
L+D + K G ME F+EM +D + N LI Y+K + + F ++++ SW
Sbjct: 111 LVDFYAKNGDMESAVSAFDEMPVKDPIPINCLITGYSKAGDVDKARRLFDGMERRTSASW 170
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
N+M+A YA GG E L D M + +PN I+++ V + CA+ + GK + +
Sbjct: 171 NSMIACYAHGGEFREALALFDRM--LSEGARPNAITITSVFSICAKSGDLDTGKRVRDLI 228
Query: 225 LRHH-----IHLSTACGFVICSC-----SVFNQLSTRDVVVWNSIISAFVRSGQVVDALD 274
+H + +V C F+++S RDVV W+++I+ + ++G+ +++L+
Sbjct: 229 GEDDLQNVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLE 288
Query: 275 LLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYG 323
L + + +PN VT+V V+ AC +L A Q L S++ +ALIDMY
Sbjct: 289 LFERMKATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQRLPLTSYLGSALIDMYT 348
Query: 324 RCGAIQKSRKIFVLMPHKNLVSWNVMI 350
RCG + ++R +F M K +++WN MI
Sbjct: 349 RCGHVGRARSVFSRMEQKGVITWNSMI 375
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 138/290 (47%), Gaps = 46/290 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y G + E + LF M+ +G RP+ V+ C++ D GK V D
Sbjct: 169 SWNSMIACYAHGGEFREALALFDRMLSEGARPNAITITSVFSICAKSGDLDTGKRVRD-- 226
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSH 150
L E D Q+ +V+ +L++ Y KCR + +
Sbjct: 227 ------------------------------LIGEDDLQNVIVHTALMEMYVKCRAIDDAR 256
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+F ++ Q+D+V+W+ M+AGYA G E L + M+ TD +PN ++L GV++ACAQ
Sbjct: 257 REFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKA--TDCRPNEVTLVGVISACAQ 314
Query: 211 VKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSI 259
+ +L + I Y + L+ T CG V + SVF+++ + V+ WNS+
Sbjct: 315 LGSDELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITWNSM 374
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG 309
I +G DA+ L + V+PN +T V++L AC + QG+
Sbjct: 375 IRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMA 424
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 138/321 (42%), Gaps = 64/321 (19%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W++M+ Y G E + LF M RP+ V AC++L G D I
Sbjct: 270 WSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQL-----GSDELVEQI 324
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
GN + + R+ +TS L ++LID Y +C ++ +
Sbjct: 325 -----GN----------YAENQRLPLTSYL----------GSALIDMYTRCGHVGRARSV 359
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
FS+++QK +++WN+M+ G A+ GF E+ +L ++M + +QPN I+ +LAAC
Sbjct: 360 FSRMEQKGVITWNSMIRGLAMNGFAEDAISLYEKM--AENGVQPNEITFVALLAACTHAG 417
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
V G A + R H+ + C+C I+ +SG + +A
Sbjct: 418 LVDQGMAFFEEMKREHL---VSPQVEHCAC----------------IVDLLCKSGGLWEA 458
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPAC-----LKLAALPQGL-----GTGSFVWNALIDMY 322
+ D+ V+PN V ++L +C ++LA L S ++ L ++Y
Sbjct: 459 YKFICDM---EVEPNAVIWTTLLSSCRAHADVELAKLASRKLLAMEPDNSSIYVLLSNIY 515
Query: 323 GRCGAIQKSRKIFVLMPHKNL 343
G +R+I LM KN+
Sbjct: 516 ADAGLWGDAREIRDLMRSKNV 536
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 10/121 (8%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
+F+ + R WNS+I+ + G+ +AL L ++ +PN +TI SV C K
Sbjct: 158 LFDGMERRTSASWNSMIACYAHGGEFREALALFDRMLSEGARPNAITITSVFSICAKSGD 217
Query: 304 LPQG------LGTGSF----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L G +G V AL++MY +C AI +R+ F M +++V+W+ MI+ Y
Sbjct: 218 LDTGKRVRDLIGEDDLQNVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGY 277
Query: 354 G 354
Sbjct: 278 A 278
>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 535
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 103/393 (26%), Positives = 187/393 (47%), Gaps = 49/393 (12%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCNWT---------SMMGMYNVLGYYEEI------- 49
++HAH++ + FL +++L++ N + + NV Y I
Sbjct: 25 KIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQLENPNVFSYNAIIRTYTHNH 84
Query: 50 -----VNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
+ +F M+ K PD F P V K+C+ L R+G+ V+ ++ + +A +
Sbjct: 85 KHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQVHAHVCKFGPKTHAITE 144
Query: 104 RPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L+D++ KCG M ++EEM ++D + NSLI + + +K + F ++ + +V
Sbjct: 145 NALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDEMPCRTIV 204
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW M+ GYA GG + + EM+++ ++P+ IS+ VL ACAQ+ +++GK IH
Sbjct: 205 SWTTMINGYARGGCYADALGIFREMQVV--GIEPDEISVISVLPACAQLGALEVGKWIHK 262
Query: 223 Y-----------VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
Y V + + CG + + +FNQ+ +DV+ W+++I G+
Sbjct: 263 YSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVISWSTMIGGLANHGKGYA 322
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNALI 319
A+ + D+ A V PN VT V VL AC +GL + + L+
Sbjct: 323 AIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVMRVDYHLEPQIEHYGCLV 382
Query: 320 DMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMIS 351
D+ GR G ++++ + MP + +WN ++S
Sbjct: 383 DLLGRSGQVEQALDTILKMPMQPDSRTWNSLLS 415
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/226 (17%), Positives = 88/226 (38%), Gaps = 50/226 (22%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
+FLV ++D ++ + F +++ ++ S+NA++ Y + ++M
Sbjct: 39 NFLVTK-MLDLCDNLSHVDYATMIFQQLENPNVFSYNAIIRTYTHNHKHPLAITVFNQM- 96
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQL 248
+ P+ + V+ +CA + +LG+ +H +V C F
Sbjct: 97 LTTKSASPDKFTFPFVIKSCAGLLCRRLGQQVHAHV----------CKFG---------- 136
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
+ N++I + + G + A + ++ +
Sbjct: 137 PKTHAITENALIDMYTKCGDMSGAYQVYEEMTERD------------------------- 171
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ WN+LI + R G ++ +R++F MP + +VSW MI+ Y
Sbjct: 172 ---AVSWNSLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYA 214
>gi|124360491|gb|ABN08501.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 575
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 165/332 (49%), Gaps = 24/332 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W +M+ Y G EE + LF M+ G V+PD V +CS L D + + +
Sbjct: 161 SWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRK 220
Query: 91 MIS-IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD----QDFLVNNSLIDFYAKCRY 145
+ + F N VK LLD+ KCG +E +FE++ + + N++I YA+
Sbjct: 221 LDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGD 280
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
L + F K+ Q+D VSWN+M+AGY G + L +EM + +P+ +++ V
Sbjct: 281 LPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVF 340
Query: 206 AACAQVKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVV 254
+AC + + LG + +HI +S + CG + + +F +++TRD+V
Sbjct: 341 SACGHLGELGLGNWAVSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMATRDLV 400
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV 314
+N++IS F G +++++LL + ++P+ +T +++L AC L +G +
Sbjct: 401 SYNTLISGFAEHGHGMESIELLSKMKEDGIEPDRITYIAILTACSHAGLLDEGQRLFESI 460
Query: 315 -------WNALIDMYGRCGAIQKSRKIFVLMP 339
+ +IDM GR G ++++ K+ MP
Sbjct: 461 KFPDVDHYACMIDMLGRAGRLEEAMKLIQSMP 492
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 149/311 (47%), Gaps = 69/311 (22%)
Query: 110 FIKCGRMEITSGLF-----EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
+ KCG E S LF +E+ ++ + ++I +AK LK + F K+ ++ +VSW
Sbjct: 103 YWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSW 162
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI---- 220
NAML+GYA GG EE L ++M + ++QP+ + + V+++C+ + L ++I
Sbjct: 163 NAMLSGYAQGGAPEETIRLFNDM-LSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKL 221
Query: 221 --------HGYVLRHHIHLSTACGFVICSCSVFNQLS----------------------- 249
+ +V + + CG + + +F QL
Sbjct: 222 DDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDL 281
Query: 250 -----------TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA--NVKPNTVTIVSVLP 296
RD V WNS+I+ + ++G+ A+ L ++I + + KP+ VT+VSV
Sbjct: 282 PSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFS 341
Query: 297 ACLKLAALPQGLGTGSF-------------VWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
AC L L GLG + V+N+LI+MY RCG++Q + IF M ++L
Sbjct: 342 ACGHLGEL--GLGNWAVSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMATRDL 399
Query: 344 VSWNVMISVYG 354
VS+N +IS +
Sbjct: 400 VSYNTLISGFA 410
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 109/244 (44%), Gaps = 42/244 (17%)
Query: 127 DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDE 186
D+D V N ++ YAK ++ + F ++ + + WN M++GY G EE + L
Sbjct: 59 DRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHV 118
Query: 187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFN 246
M ++ N I+ + ++ A+ +K + F+
Sbjct: 119 MG--DQEISRNVITWTTMITGHAKKGNLKTARM------------------------YFD 152
Query: 247 QLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV-ANVKPNTVTIVSVLPACLKLAA-- 303
++ R VV WN+++S + + G + + L D++ NV+P+ T +V+ +C L
Sbjct: 153 KMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPC 212
Query: 304 LPQ----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLM---PHKNLVSWNVMI 350
L + G FV AL+DM+ +CG ++ + KIF + +++ V WN MI
Sbjct: 213 LSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMI 272
Query: 351 SVYG 354
S Y
Sbjct: 273 SAYA 276
Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 283 NVKPN----TVTIVSVLPACLKLAA--LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFV 336
++KPN +V + S + A L G +V N ++ +Y + G I+ +RK+F
Sbjct: 27 DIKPNASFYSVMMKSAGSESMLFLAHVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFD 86
Query: 337 LMPHKNLVSWNVMISVY 353
MP + + WNVMIS Y
Sbjct: 87 EMPDRTVADWNVMISGY 103
>gi|357507475|ref|XP_003624026.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124360495|gb|ABN08505.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499041|gb|AES80244.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 646
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 92/332 (27%), Positives = 167/332 (50%), Gaps = 25/332 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W +M+ Y G EE + LF M+ G V+PD V +CS L D + + +
Sbjct: 233 SWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWVTVISSCSSLGDPCLSESIVRK 292
Query: 91 MI-SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD----QDFLVNNSLIDFYAKCRY 145
+ ++ F N VK LLD+ KCG +E +FE++ + + N++I YA+
Sbjct: 293 LDDTVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGD 352
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
L + F K+ Q+D VSWN+M+AGY G + L +EM + D +P+ +++ V
Sbjct: 353 LPSARHLFDKMPQRDTVSWNSMIAGYTQNGESVKAIKLFEEM-ISSEDSKPDEVTMVSVF 411
Query: 206 AACAQVKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVV 254
+AC + + LG + +HI +S + CG + + +F +++TRD+V
Sbjct: 412 SACGHLGELGLGNWAVSILKENHIQISISVYNSLISMYSRCGSMQDAVLIFQEMATRDLV 471
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV 314
+N++IS F G +++++LL + ++P+ +T +++L AC L +G +
Sbjct: 472 SYNTLISGFAEHGHGMESIELLLKMKEDGIEPDRITYIAILTACSHAGLLGEGQRLFESI 531
Query: 315 -------WNALIDMYGRCGAIQKSRKIFVLMP 339
+ +IDM GR G ++++ K+ MP
Sbjct: 532 KFPDVDHYACMIDMLGRAGRLEEAMKLIQSMP 563
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 148/310 (47%), Gaps = 68/310 (21%)
Query: 110 FIKCGRMEITSGLF-----EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
+ KCG E S LF +E+ ++ + ++I +AK LK + F K+ ++ +VSW
Sbjct: 175 YWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSW 234
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI---- 220
NAML+GYA GG EE L ++M + ++QP+ + V+++C+ + L ++I
Sbjct: 235 NAMLSGYAQGGAPEETIRLFNDM-LSPGNVQPDETTWVTVISSCSSLGDPCLSESIVRKL 293
Query: 221 --------HGYVLRHHIHLSTACGFVICSCSVFNQL------------------------ 248
+ +V + + CG + + +F QL
Sbjct: 294 DDTVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDL 353
Query: 249 ----------STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA-NVKPNTVTIVSVLPA 297
RD V WNS+I+ + ++G+ V A+ L ++I + + KP+ VT+VSV A
Sbjct: 354 PSARHLFDKMPQRDTVSWNSMIAGYTQNGESVKAIKLFEEMISSEDSKPDEVTMVSVFSA 413
Query: 298 CLKLAALPQGLGTGSF-------------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLV 344
C L L GLG + V+N+LI MY RCG++Q + IF M ++LV
Sbjct: 414 CGHLGEL--GLGNWAVSILKENHIQISISVYNSLISMYSRCGSMQDAVLIFQEMATRDLV 471
Query: 345 SWNVMISVYG 354
S+N +IS +
Sbjct: 472 SYNTLISGFA 481
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 110/244 (45%), Gaps = 42/244 (17%)
Query: 127 DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDE 186
D+D V N ++ YAK ++ + F ++ + + WN M++GY G EE + L
Sbjct: 131 DRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHV 190
Query: 187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFN 246
M ++ N I+ + ++ A+ +K + F+
Sbjct: 191 MG--DQEISRNVITWTTMITGHAKKGNLKTARM------------------------YFD 224
Query: 247 QLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV-ANVKPNTVTIVSVLPACLKLAA-- 303
++ R VV WN+++S + + G + + L D++ NV+P+ T V+V+ +C L
Sbjct: 225 KMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWVTVISSCSSLGDPC 284
Query: 304 LPQ----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLM---PHKNLVSWNVMI 350
L + G FV AL+DM+ +CG ++ + KIF + +++ V WN MI
Sbjct: 285 LSESIVRKLDDTVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMI 344
Query: 351 SVYG 354
S Y
Sbjct: 345 SAYA 348
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 28/160 (17%)
Query: 218 KAIHGYVLRHHIH--------LSTACGFVIC----SCSVFNQLSTRDVVVWNSIISAFVR 265
+ +H ++ H +H L T C ++ +C +F+ + DV V+ ++ + +
Sbjct: 20 RQLHAQLVHHSLHHQNHWVVLLLTQCTRLLAPSSYTCHIFHAATHPDVRVFTFMLKYYSQ 79
Query: 266 SG---QVVDAL--DLLRDVIVANVKPNTVTIVSVL------PACLKLA-ALPQGLGTGSF 313
G QV +L +LR N+KPNT + SV+ + L LA L G +
Sbjct: 80 IGVRAQVPVSLFKHMLRH---CNIKPNT-SFYSVMMKSAGSESMLFLAHVLKSGYDRDHY 135
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V N ++ +Y + G I+ +RK+F MP + + WNVMIS Y
Sbjct: 136 VRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGY 175
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 84/208 (40%), Gaps = 30/208 (14%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F D+ + ML Y+ G R +V L + + +++PNT S ++ +
Sbjct: 59 FHAATHPDVRVFTFMLKYYSQIGVRAQVPVSLFKHMLRHCNIKPNTSFYSVMMKSAGSES 118
Query: 213 GVKLGKAIH-GYVLRHHIH-----LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
+ L + GY H++ + G + + +F+++ R V WN +IS + +
Sbjct: 119 MLFLAHVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKC 178
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCG 326
G +A L + + N +T W +I + + G
Sbjct: 179 GNEEEASTLFHVMGDQEISRNVIT------------------------WTTMITGHAKKG 214
Query: 327 AIQKSRKIFVLMPHKNLVSWNVMISVYG 354
++ +R F MP +++VSWN M+S Y
Sbjct: 215 NLKTARMYFDKMPERSVVSWNAMLSGYA 242
>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
Length = 1072
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 120/416 (28%), Positives = 196/416 (47%), Gaps = 70/416 (16%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNVLG 44
Q+HAHL + G+ ++L+E + W ++ Y G
Sbjct: 366 QLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGG 425
Query: 45 YYEEIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDYRVGK---------DVYDYMISI 94
++EE V+L++ M+ + +FV P V KACS D VG D++ MIS
Sbjct: 426 FFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKNGQASEGLDMFSQMISE 485
Query: 95 KFEGN---------ACVKRPLLDL----FIKCGRMEITSGLFEEMDQ--DFLVNNSLIDF 139
E + AC + L L +K GR + MD DFL +L++
Sbjct: 486 AVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDPELDFL-GPALMEL 544
Query: 140 YAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI 199
YA L+ H F IK+K ++SWN +++ + G EE LL ++M + P++
Sbjct: 545 YADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEA--LLLFVQMQTQGLMPDSY 602
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYVLRHH----------IHLSTACGFVICSCSVFNQLS 249
SL+ L+AC + +LG IHGY+++ I + CGFV + +F ++
Sbjct: 603 SLASSLSACGTISFSQLGAQIHGYIIKTGNFNDFVQNALIDMYAKCGFVHSANKMFEKIK 662
Query: 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-- 307
+ +V WNS+I F ++G V+A+ L + + VK + +T +SV+ AC L L +G
Sbjct: 663 EKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKW 722
Query: 308 ---------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L S++ AL DMY +CG +Q + +F M +++VSW+VMI+ YG
Sbjct: 723 VHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYG 778
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 159/347 (45%), Gaps = 64/347 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ ++ G EE + LF M +G+ PD + AC + ++G ++ Y+
Sbjct: 568 SWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYI 627
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I +G F + V N+LID YAKC ++ ++
Sbjct: 628 IK--------------------------TGNFND-----FVQNALIDMYAKCGFVHSANK 656
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F KIK+K LV+WN+M+ G++ G+ E L D+M M M + ++ V+ AC+ +
Sbjct: 657 MFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKM--DKLTFLSVIQACSHL 714
Query: 212 KGVKLGKAIHG----YVLRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
++ GK +H Y LR +L TA CG + + VF+++S R +V W+ +I
Sbjct: 715 GYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMI 774
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA--- 317
+ + GQ+ + L ++ + +KPN +T + +L AC A+ + G +N+
Sbjct: 775 AGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEE----GKLYFNSMSE 830
Query: 318 ------------LIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMIS 351
++D+ R G + + +I +P N W +++
Sbjct: 831 FGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLN 877
>gi|449470126|ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like [Cucumis sativus]
Length = 1463
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/345 (28%), Positives = 161/345 (46%), Gaps = 66/345 (19%)
Query: 21 FLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD 80
F G Q ++ W++M+G Y+ ++E+V LF+LM+ GV PD F+ PK+ +AC +D
Sbjct: 137 FDGMQERNLY-TWSAMIGAYSREQRWKEVVELFFLMMGDGVLPDAFLFPKILQACGNCED 195
Query: 81 YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFY 140
K ++ L I+CG + ++NS++ +
Sbjct: 196 LETVKLIHS-------------------LVIRCG-----------LSCYMRLSNSILTAF 225
Query: 141 AKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTIS 200
KC L ++ F + ++D VSWN M+AGY G +E LLD M +P ++
Sbjct: 226 VKCGKLSLARKFFGNMDERDGVSWNVMIAGYCQKGNGDEARRLLDTMS--NQGFKPGLVT 283
Query: 201 LSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLS-TRDVVVWNSI 259
+ ++A+ +Q LG C VI + DV W S+
Sbjct: 284 YNIMIASYSQ-----LGD----------------CDLVIDLKKKMESVGLAPDVYTWTSM 322
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL----------- 308
IS F +S ++ ALD + +I+A V+PNT+TI S AC L +L GL
Sbjct: 323 ISGFSQSSRISQALDFFKKMILAGVEPNTITIASATSACASLKSLQNGLEIHCFAIKMGI 382
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ V N+LIDMY +CG ++ +R +F + K++ +WN MI Y
Sbjct: 383 ARETLVGNSLIDMYSKCGKLEAARHVFDTILEKDVYTWNSMIGGY 427
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 149/333 (44%), Gaps = 62/333 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WTSM+ ++ + ++ F MI GV P+ AC+ LK + G +++ +
Sbjct: 318 TWTSMISGFSQSSRISQALDFFKKMILAGVEPNTITIASATSACASLKSLQNGLEIHCFA 377
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + G+ E LV NSLID Y+KC L+ +
Sbjct: 378 IKM--------------------------GIARET----LVGNSLIDMYSKCGKLEAARH 407
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F I +KD+ +WN+M+ GY G+ + L M + ++ + PN ++ + +++ C Q
Sbjct: 408 VFDTILEKDVYTWNSMIGGYCQAGYGGKAYELF--MRLRESTVMPNVVTWNAMISGCIQN 465
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
G L + G V R+ WNS+I+ + + G+
Sbjct: 466 -----GDEDQAMDL---FQIMEKDGGV-----------KRNTASWNSLIAGYHQLGEKNK 506
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLGTGSFVWNALID 320
AL + R + N PN+VTI+S+LPAC + A L + L + V N+L+D
Sbjct: 507 ALAIFRQMQSLNFSPNSVTILSILPACANVMAEKKIKEIHGCVLRRNLESELAVANSLVD 566
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
Y + G I+ SR +F M K++++WN +I+ Y
Sbjct: 567 TYAKSGNIKYSRTVFNGMSSKDIITWNSIIAGY 599
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 113/268 (42%), Gaps = 54/268 (20%)
Query: 31 CNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W S++ Y+ LG + + +F M P+ + AC+ + + K+++
Sbjct: 489 ASWNSLIAGYHQLGEKNKALAIFRQMQSLNFSPNSVTILSILPACANVMAEKKIKEIH-- 546
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
CV R ++ + V NSL+D YAK +K S
Sbjct: 547 ---------GCVLR-------------------RNLESELAVANSLVDTYAKSGNIKYSR 578
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F+ + KD+++WN+++AGY L G + L D+M + ++PN +L+ ++ A
Sbjct: 579 TVFNGMSSKDIITWNSIIAGYILHGCSDSAFQLFDQMRNL--GIRPNRGTLASIIHAYGI 636
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
V G+ + + H L T ++ +++ + RSG++
Sbjct: 637 AGMVDKGRHVFSSITEEHQILPTLDHYL-------------------AMVDLYGRSGRLA 677
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPAC 298
DA++ + D+ ++P+ S+L AC
Sbjct: 678 DAIEFIEDM---PIEPDVSIWTSLLTAC 702
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 107/251 (42%), Gaps = 27/251 (10%)
Query: 111 IKCGR-MEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLA 169
I+ GR + + GL ++ V L+ YAKC LK + F +++++L +W+AM+
Sbjct: 96 IELGRELHVRMGLVHRVNP--FVETKLVSMYAKCGCLKDARKVFDGMQERNLYTWSAMIG 153
Query: 170 GYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR--- 226
Y+ +EV L M+ + P+ +L AC + ++ K IH V+R
Sbjct: 154 AYSREQRWKEVVELF--FLMMGDGVLPDAFLFPKILQACGNCEDLETVKLIHSLVIRCGL 211
Query: 227 -HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRD 278
++ LS + CG + + F + RD V WN +I+ + + G +A LL
Sbjct: 212 SCYMRLSNSILTAFVKCGKLSLARKFFGNMDERDGVSWNVMIAGYCQKGNGDEARRLLDT 271
Query: 279 VIVANVKPNTVTI------VSVLPAC-----LKLAALPQGLGTGSFVWNALIDMYGRCGA 327
+ KP VT S L C LK GL + W ++I + +
Sbjct: 272 MSNQGFKPGLVTYNIMIASYSQLGDCDLVIDLKKKMESVGLAPDVYTWTSMISGFSQSSR 331
Query: 328 IQKSRKIFVLM 338
I ++ F M
Sbjct: 332 ISQALDFFKKM 342
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 17/96 (17%)
Query: 275 LLRDVIVA-------NVKPNTVTIVSVLPACLKLAALPQG------LG----TGSFVWNA 317
LLR+ I A K +T T +++L C+ + ++ G +G FV
Sbjct: 60 LLREAITAIDSISKRGSKLSTNTYINLLQTCIDVGSIELGRELHVRMGLVHRVNPFVETK 119
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L+ MY +CG ++ +RK+F M +NL +W+ MI Y
Sbjct: 120 LVSMYAKCGCLKDARKVFDGMQERNLYTWSAMIGAY 155
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/361 (26%), Positives = 163/361 (45%), Gaps = 85/361 (23%)
Query: 47 EEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPL 106
E+ + ++ M +G+ D F P + KA S +K G +++ + F
Sbjct: 104 EKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGF---------- 153
Query: 107 LDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNA 166
D D V L+ YA C + + F K+ +D+V+W+
Sbjct: 154 --------------------DSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSI 193
Query: 167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR 226
M+ GY G + L +EM+ +++P+ + LS VL+AC + + GK IH +++
Sbjct: 194 MIDGYCQSGLFNDALLLFEEMK--NYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIME 251
Query: 227 HHI----HLSTACGFVICSC--------------------------------------SV 244
++I HL +A + SC SV
Sbjct: 252 NNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSV 311
Query: 245 FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL 304
FNQ+ +D+V W+++IS + S +AL+L ++ +KP+ VT++SV+ AC L AL
Sbjct: 312 FNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGAL 371
Query: 305 PQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
Q G G + NALI+MY +CG+++++R+IF MP KN++SW MIS +
Sbjct: 372 DQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAF 431
Query: 354 G 354
Sbjct: 432 A 432
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/346 (23%), Positives = 171/346 (49%), Gaps = 27/346 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W+ M+ Y G + + + LF M + V PD + V AC + GK ++D++
Sbjct: 190 TWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFI 249
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSH 150
+ + ++ L+ ++ CG M++ LFE+M ++ + + +++ Y+K ++ +
Sbjct: 250 MENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENAR 309
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F+++ +KDLV W+AM++GYA +E NL +EM+ + ++P+ +++ V+ ACA
Sbjct: 310 SVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSL--GIKPDQVTMLSVITACAH 367
Query: 211 VKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ + K IH +V ++ I + CG + + +F+++ ++V+ W +
Sbjct: 368 LGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCM 427
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------ 307
ISAF G AL + N++PN +T V VL AC + +G
Sbjct: 428 ISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHN 487
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ + ++D++GR ++++ ++ MP N++ W +++
Sbjct: 488 ITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAA 533
>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 902
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 160/345 (46%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT +G Y G E +F M +GV P+ V A S + GK V+ +
Sbjct: 194 SWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRI 253
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
++ E + V L+ ++ KCG Y CR +
Sbjct: 254 LNAGHESDTAVGTALVKMYAKCGS------------------------YKDCRQV----- 284
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K+ +DL++WN M+ G A GG+ EE + + ++M+ + + PN I+ +L AC
Sbjct: 285 -FEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQ--REGVMPNKITYVILLNACVNS 341
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ GK IH V + I + + CG + + VF+++ +DV+ W ++I
Sbjct: 342 AALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMI 401
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLG 309
+SG +AL + +++ A V+PN VT S+L AC AAL GL
Sbjct: 402 GGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLA 461
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
T + V N L++MY CG+++ +R++F M +++V++N MI Y
Sbjct: 462 TDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYA 506
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 89/393 (22%), Positives = 170/393 (43%), Gaps = 75/393 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
++ G VH+ ++ G E +G+ L++++ W +M+G
Sbjct: 243 LKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGG 302
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
GY+EE ++ M +GV P+ + AC GK+++ + F +
Sbjct: 303 LAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSD 362
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V+ L+ ++ +CG +K + F K+ +K
Sbjct: 363 IGVQNALISMYSRCGS------------------------------IKDARLVFDKMVRK 392
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D++SW AM+ G A GF E + EM+ Q ++PN ++ + +L AC+ ++ G+
Sbjct: 393 DVISWTAMIGGLAKSGFGAEALTVYQEMQ--QAGVEPNRVTYTSILNACSSPAALEWGRR 450
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH V+ +++ + CG V + VF+++ RD+V +N++I +
Sbjct: 451 IHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNL 510
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNA 317
+AL L + +KP+ VT +++L AC +L G + + V NA
Sbjct: 511 GKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNA 570
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
L+ Y +CG+ + +F M +N++SWN +I
Sbjct: 571 LVSTYAKCGSFSDASIVFEKMTKRNVISWNAII 603
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/341 (27%), Positives = 148/341 (43%), Gaps = 54/341 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y GY E+ + L M G+ PD +C G++++
Sbjct: 93 SWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIH--- 149
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F+ + +GL D V N +++ YAKC ++ +
Sbjct: 150 ----FQA-------------------MQAGLLF----DVKVANCILNMYAKCGSIEEARE 182
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K+++K +VSW + GYA G E + +ME Q + PN I+ VL A +
Sbjct: 183 VFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKME--QEGVVPNRITYISVLNAFSSP 240
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACG------FVICSC-----SVFNQLSTRDVVVWNSII 260
+K GKA+H +L TA G + C VF +L RD++ WN++I
Sbjct: 241 AALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMI 300
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLG 309
G +A ++ + V PN +T V +L AC+ AAL G
Sbjct: 301 GGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFT 360
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ V NALI MY RCG+I+ +R +F M K+++SW MI
Sbjct: 361 SDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMI 401
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 149/343 (43%), Gaps = 56/343 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+G G+ E + ++ M GV P+ + ACS G+ ++ +
Sbjct: 396 SWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQV 455
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ +GL D V N+L++ Y+ C +K +
Sbjct: 456 VE--------------------------AGLA----TDAHVGNTLVNMYSMCGSVKDARQ 485
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ Q+D+V++NAM+ GYA +E L D ++ + ++P+ ++ +L ACA
Sbjct: 486 VFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQ--EEGLKPDKVTYINMLNACANS 543
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCS-----------VFNQLSTRDVVVWNSII 260
++ + IH V + T+ G + S VF +++ R+V+ WN+II
Sbjct: 544 GSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAII 603
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-----TGSFV- 314
+ G+ DAL L + + VKP+ VT VS+L AC L +G + F
Sbjct: 604 GGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAI 663
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ ++D+ GR G + ++ + MP N W ++
Sbjct: 664 IPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALL 706
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 139/303 (45%), Gaps = 52/303 (17%)
Query: 70 KVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQD 129
K+ K C E+KD G+ V+ ++I + + L++++I+CG +E E Q
Sbjct: 28 KMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIE-------EARQ- 79
Query: 130 FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
+ K Y+ ++ + SWNAM+ GY G+ E+ LL +M+
Sbjct: 80 ---------VWKKLSYM-----------ERTVHSWNAMVVGYIQYGYIEKALKLLRQMQ- 118
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI-----------HLSTACGFV 238
Q + P+ ++ L++C ++ G+ IH ++ + ++ CG +
Sbjct: 119 -QHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSI 177
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ VF+++ + VV W I + G+ A ++ + + V PN +T +SVL A
Sbjct: 178 EEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAF 237
Query: 299 LKLAALPQGLGTGSFVWN-----------ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
AAL G S + N AL+ MY +CG+ + R++F + +++L++WN
Sbjct: 238 SSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWN 297
Query: 348 VMI 350
MI
Sbjct: 298 TMI 300
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 94/188 (50%), Gaps = 24/188 (12%)
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVI 239
Q Q N+ +L C +VK + G+ +H ++++H I++ CG +
Sbjct: 16 QQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIE 75
Query: 240 CSCSVFNQLS--TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ V+ +LS R V WN+++ +++ G + AL LLR + + P+ TI+S L +
Sbjct: 76 EARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSS 135
Query: 298 CLKLAALP-------QGLGTGSF----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
C AL Q + G V N +++MY +CG+I+++R++F M K++VSW
Sbjct: 136 CKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSW 195
Query: 347 NVMISVYG 354
+ I Y
Sbjct: 196 TITIGGYA 203
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/239 (17%), Positives = 98/239 (41%), Gaps = 53/239 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G ++H ++ G+ A +G+ L+ ++ + +M+G
Sbjct: 445 LEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGG 504
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y +E + LF + ++G++PD + AC+ ++++ + F +
Sbjct: 505 YAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSD 564
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V L+ + KCG S +FE+M ++
Sbjct: 565 TSVGNALVSTYAKCGSFSDASIVFEKM------------------------------TKR 594
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+++SWNA++ G A G ++ L + M+M ++P+ ++ +L+AC+ ++ G+
Sbjct: 595 NVISWNAIIGGSAQHGRGQDALQLFERMKM--EGVKPDIVTFVSLLSACSHAGLLEEGR 651
>gi|449523327|ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like, partial [Cucumis sativus]
Length = 1090
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/345 (28%), Positives = 161/345 (46%), Gaps = 66/345 (19%)
Query: 21 FLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD 80
F G Q ++ W++M+G Y+ ++E+V LF+LM+ GV PD F+ PK+ +AC +D
Sbjct: 137 FDGMQERNLY-TWSAMIGAYSREQRWKEVVELFFLMMGDGVLPDAFLFPKILQACGNCED 195
Query: 81 YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFY 140
K ++ L I+CG + ++NS++ +
Sbjct: 196 LETVKLIHS-------------------LVIRCG-----------LSCYMRLSNSILTAF 225
Query: 141 AKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTIS 200
KC L ++ F + ++D VSWN M+AGY G +E LLD M +P ++
Sbjct: 226 VKCGKLSLARKFFGNMDERDGVSWNVMIAGYCQKGNGDEARRLLDTMS--NQGFKPGLVT 283
Query: 201 LSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLS-TRDVVVWNSI 259
+ ++A+ +Q LG C VI + DV W S+
Sbjct: 284 YNIMIASYSQ-----LGD----------------CDLVIDLKKKMESVGLAPDVYTWTSM 322
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL----------- 308
IS F +S ++ ALD + +I+A V+PNT+TI S AC L +L GL
Sbjct: 323 ISGFSQSSRISQALDFFKKMILAGVEPNTITIASATSACASLKSLQNGLEIHCFAIKMGI 382
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ V N+LIDMY +CG ++ +R +F + K++ +WN MI Y
Sbjct: 383 ARETLVGNSLIDMYSKCGKLEAARHVFDTILEKDVYTWNSMIGGY 427
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 149/332 (44%), Gaps = 62/332 (18%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WTSM+ ++ + ++ F MI GV P+ AC+ LK + G +++ + I
Sbjct: 319 WTSMISGFSQSSRISQALDFFKKMILAGVEPNTITIASATSACASLKSLQNGLEIHCFAI 378
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ G+ E LV NSLID Y+KC L+ +
Sbjct: 379 KM--------------------------GIARET----LVGNSLIDMYSKCGKLEAARHV 408
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I +KD+ +WN+M+ GY G+ + L M + ++ + PN ++ + +++ C Q
Sbjct: 409 FDTILEKDVYTWNSMIGGYCQAGYGGKAYELF--MRLRESTVMPNVVTWNAMISGCIQN- 465
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
G L + G V R+ WNS+I+ + + G+ A
Sbjct: 466 ----GDEDQAMDL---FQIMEKDGGV-----------KRNTASWNSLIAGYHQLGEKNKA 507
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLGTGSFVWNALIDM 321
L + R + N PN+VTI+S+LPAC + A L + L + V N+L+D
Sbjct: 508 LAIFRQMQSLNFSPNSVTILSILPACANVMAEKKIKEIHGCVLRRNLESELAVANSLVDT 567
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
Y + G I+ SR +F M K++++WN +I+ Y
Sbjct: 568 YAKSGNIKYSRTVFNGMSSKDIITWNSIIAGY 599
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 113/268 (42%), Gaps = 54/268 (20%)
Query: 31 CNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W S++ Y+ LG + + +F M P+ + AC+ + + K+++
Sbjct: 489 ASWNSLIAGYHQLGEKNKALAIFRQMQSLNFSPNSVTILSILPACANVMAEKKIKEIH-- 546
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
CV R ++ + V NSL+D YAK +K S
Sbjct: 547 ---------GCVLR-------------------RNLESELAVANSLVDTYAKSGNIKYSR 578
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F+ + KD+++WN+++AGY L G + L D+M + ++PN +L+ ++ A
Sbjct: 579 TVFNGMSSKDIITWNSIIAGYILHGCSDSAFQLFDQMRNL--GIRPNRGTLASIIHAYGI 636
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
V G+ + + H L T ++ +++ + RSG++
Sbjct: 637 AGMVDKGRHVFSSITEEHQILPTLDHYL-------------------AMVDLYGRSGRLA 677
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPAC 298
DA++ + D+ ++P+ S+L AC
Sbjct: 678 DAIEFIEDM---PIEPDVSIWTSLLTAC 702
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 107/251 (42%), Gaps = 27/251 (10%)
Query: 111 IKCGR-MEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLA 169
I+ GR + + GL ++ V L+ YAKC LK + F +++++L +W+AM+
Sbjct: 96 IELGRELHVRMGLVHRVNP--FVETKLVSMYAKCGCLKDARKVFDGMQERNLYTWSAMIG 153
Query: 170 GYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR--- 226
Y+ +EV L M+ + P+ +L AC + ++ K IH V+R
Sbjct: 154 AYSREQRWKEVVELF--FLMMGDGVLPDAFLFPKILQACGNCEDLETVKLIHSLVIRCGL 211
Query: 227 -HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRD 278
++ LS + CG + + F + RD V WN +I+ + + G +A LL
Sbjct: 212 SCYMRLSNSILTAFVKCGKLSLARKFFGNMDERDGVSWNVMIAGYCQKGNGDEARRLLDT 271
Query: 279 VIVANVKPNTVTI------VSVLPAC-----LKLAALPQGLGTGSFVWNALIDMYGRCGA 327
+ KP VT S L C LK GL + W ++I + +
Sbjct: 272 MSNQGFKPGLVTYNIMIASYSQLGDCDLVIDLKKKMESVGLAPDVYTWTSMISGFSQSSR 331
Query: 328 IQKSRKIFVLM 338
I ++ F M
Sbjct: 332 ISQALDFFKKM 342
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 17/96 (17%)
Query: 275 LLRDVIVA-------NVKPNTVTIVSVLPACLKLAALPQG------LG----TGSFVWNA 317
LLR+ I A K +T T +++L C+ + ++ G +G FV
Sbjct: 60 LLREAITAIDSISKRGSKLSTNTYINLLQTCIDVGSIELGRELHVRMGLVHRVNPFVETK 119
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L+ MY +CG ++ +RK+F M +NL +W+ MI Y
Sbjct: 120 LVSMYAKCGCLKDARKVFDGMQERNLYTWSAMIGAY 155
>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Vitis vinifera]
Length = 590
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/391 (25%), Positives = 178/391 (45%), Gaps = 80/391 (20%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCN-----------------------WTSMMGMYNV 42
Q+HAHLI G+ F+ S++ E F + +++ Y
Sbjct: 23 QIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYAFDFLNQTDLHVGTLPYNTLIAAYAS 82
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+ ++ ++ G PD + P V KAC++ + G+ V+ + + F
Sbjct: 83 SCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVKMGF------ 136
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L DL+++ NSL+ FY+ C + F ++ +D+V
Sbjct: 137 ---LCDLYVQ---------------------NSLLHFYSVCGKWGGAGRVFDEMLVRDVV 172
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW +++GY G +E NL +M+++ PN + VL AC ++ + +GK +HG
Sbjct: 173 SWTGLISGYVRTGLFDEAINLFLKMDVV-----PNVATFVSVLVACGRMGYLSMGKGVHG 227
Query: 223 YVLRHHIHLSTACG------FVICSC-----SVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V + + G +V C C +F++L RD+V W SIIS V+ Q D
Sbjct: 228 LVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKD 287
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------WN-----ALID 320
+L+L D+ ++ V+P+ + + SVL AC L AL G ++ W+ AL+D
Sbjct: 288 SLELFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVD 347
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
MY +CG I+ + IF +P++N+ +WN ++
Sbjct: 348 MYAKCGCIEMALHIFNGIPNRNIFTWNALLG 378
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/345 (23%), Positives = 152/345 (44%), Gaps = 60/345 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT ++ Y G ++E +NLF M V P+ V AC + +GK V+ +
Sbjct: 173 SWTGLISGYVRTGLFDEAINLFLKM---DVVPNVATFVSVLVACGRMGYLSMGKGVHGLV 229
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F G+ +V N+L+D Y KC L +
Sbjct: 230 YKRAF------------------------GI------GLVVGNALVDMYVKCECLCEARK 259
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +D+VSW ++++G ++ L +M++ + ++P+ I L+ VL+ACA +
Sbjct: 260 LFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQI--SGVEPDRIILTSVLSACASL 317
Query: 212 KGVKLGKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ G+ + Y+ R IH+ TA CG + + +FN + R++ WN+++
Sbjct: 318 GALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALL 377
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG------TGSFV 314
G +AL +I A ++PN VT +++L AC + +G + F
Sbjct: 378 GGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMISQPFN 437
Query: 315 WNALIDMYG-------RCGAIQKSRKIFVLMP-HKNLVSWNVMIS 351
++ ++ YG R G + ++ K MP +++ W ++S
Sbjct: 438 FSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIWGALLS 482
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 114/276 (41%), Gaps = 48/276 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTS++ ++ + LFY M GV PD + V AC+ L G+ V +Y
Sbjct: 271 SWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEY- 329
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I+ +G ++ D + +L+D YAKC ++++
Sbjct: 330 --IERQG---------------------------IEWDIHIGTALVDMYAKCGCIEMALH 360
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME-MIQTDMQPNTISLSGVLAACAQ 210
F+ I +++ +WNA+L G A+ G E L E MI ++PN ++ +L AC
Sbjct: 361 IFNGIPNRNIFTWNALLGGLAMHGHGHEA---LKHFELMIGAGIRPNEVTFLAILTACCH 417
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVF--------------NQLSTRDVVVW 256
V G++ ++ + S C + N DV++W
Sbjct: 418 SGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIW 477
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
+++SA +G V + ++L ++ + + V ++
Sbjct: 478 GALLSACKANGNVELSQEILSHLLELKSQDSGVYVL 513
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 12/130 (9%)
Query: 236 GFVICSCSVFNQLSTR-DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV 294
GFV + NQ + +N++I+A+ S A + ++ P+ T V
Sbjct: 52 GFVDYAFDFLNQTDLHVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVV 111
Query: 295 LPACLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
L AC K + +G +V N+L+ Y CG + ++F M +++
Sbjct: 112 LKACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDV 171
Query: 344 VSWNVMISVY 353
VSW +IS Y
Sbjct: 172 VSWTGLISGY 181
>gi|297741134|emb|CBI31865.3| unnamed protein product [Vitis vinifera]
Length = 573
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/391 (25%), Positives = 178/391 (45%), Gaps = 80/391 (20%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCN-----------------------WTSMMGMYNV 42
Q+HAHLI G+ F+ S++ E F + +++ Y
Sbjct: 23 QIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYAFDFLNQTDLHVGTLPYNTLIAAYAS 82
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+ ++ ++ G PD + P V KAC++ + G+ V+ + + F
Sbjct: 83 SCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVKMGF------ 136
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L DL+++ NSL+ FY+ C + F ++ +D+V
Sbjct: 137 ---LCDLYVQ---------------------NSLLHFYSVCGKWGGAGRVFDEMLVRDVV 172
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW +++GY G +E NL +M+++ PN + VL AC ++ + +GK +HG
Sbjct: 173 SWTGLISGYVRTGLFDEAINLFLKMDVV-----PNVATFVSVLVACGRMGYLSMGKGVHG 227
Query: 223 YVLRHHIHLSTACG------FVICSC-----SVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V + + G +V C C +F++L RD+V W SIIS V+ Q D
Sbjct: 228 LVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKD 287
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------WN-----ALID 320
+L+L D+ ++ V+P+ + + SVL AC L AL G ++ W+ AL+D
Sbjct: 288 SLELFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVD 347
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
MY +CG I+ + IF +P++N+ +WN ++
Sbjct: 348 MYAKCGCIEMALHIFNGIPNRNIFTWNALLG 378
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 129/287 (44%), Gaps = 46/287 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT ++ Y G ++E +NLF M V P+ V AC + +GK V+ +
Sbjct: 173 SWTGLISGYVRTGLFDEAINLFLKM---DVVPNVATFVSVLVACGRMGYLSMGKGVHGLV 229
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F G+ +V N+L+D Y KC L +
Sbjct: 230 YKRAF------------------------GI------GLVVGNALVDMYVKCECLCEARK 259
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +D+VSW ++++G ++ L +M++ + ++P+ I L+ VL+ACA +
Sbjct: 260 LFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQI--SGVEPDRIILTSVLSACASL 317
Query: 212 KGVKLGKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ G+ + Y+ R IH+ TA CG + + +FN + R++ WN+++
Sbjct: 318 GALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALL 377
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
G +AL +I A ++PN VT +++L AC + +G
Sbjct: 378 GGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEG 424
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 34/189 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTS++ ++ + LFY M GV PD + V AC+ L G+ V +Y
Sbjct: 271 SWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEY- 329
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I+ +G ++ D + +L+D YAKC ++++
Sbjct: 330 --IERQG---------------------------IEWDIHIGTALVDMYAKCGCIEMALH 360
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME-MIQTDMQPNTISLSGVLAACAQ 210
F+ I +++ +WNA+L G A+ G E L E MI ++PN ++ +L AC
Sbjct: 361 IFNGIPNRNIFTWNALLGGLAMHGHGHEA---LKHFELMIGAGIRPNEVTFLAILTACCH 417
Query: 211 VKGVKLGKA 219
V G++
Sbjct: 418 SGLVAEGRS 426
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 12/130 (9%)
Query: 236 GFVICSCSVFNQLSTR-DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV 294
GFV + NQ + +N++I+A+ S A + ++ P+ T V
Sbjct: 52 GFVDYAFDFLNQTDLHVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVV 111
Query: 295 LPACLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
L AC K + +G +V N+L+ Y CG + ++F M +++
Sbjct: 112 LKACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDV 171
Query: 344 VSWNVMISVY 353
VSW +IS Y
Sbjct: 172 VSWTGLISGY 181
>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 120/467 (25%), Positives = 204/467 (43%), Gaps = 118/467 (25%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLL-------------------EVFCN--WTSMMGMYNV 42
G Q HA ++V G+ LG++LL ++C+ W M+ + +
Sbjct: 65 GRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTM 124
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGK-------------DVYD 89
+G ++ + ++ M+ G PD + P V KAC L +G+ DV+
Sbjct: 125 MGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFV 184
Query: 90 YMISIKF-EGNACV--------KRP---------LLDLFIKCGRMEITSGLFEEM----- 126
IKF N C+ + P +L+ ++K G + +G+F EM
Sbjct: 185 GSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTET 244
Query: 127 -----------------------------------DQDFLVNNS--LIDFYAKCRYLKVS 149
+ D V N+ LID Y KCR ++++
Sbjct: 245 NPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMA 304
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + D+V AM++GY L G + ++Q M+ N+++L+ VL ACA
Sbjct: 305 RKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIF--RWLLQERMRANSVTLASVLPACA 362
Query: 210 QVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ + LGK +HG++L++ + + CG + + F +S +D V WNS
Sbjct: 363 GLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNS 422
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------- 307
+I++ ++G+ +A+DL R + +A K + V+I + L AC L AL G
Sbjct: 423 MITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGA 482
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ F +ALIDMY +CG + + ++F M KN VSWN +I+ YG
Sbjct: 483 FRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYG 529
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 155/329 (47%), Gaps = 55/329 (16%)
Query: 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS 93
T+M+ Y + G + +F ++ + +R + V AC+ L +GK+++ +++
Sbjct: 320 TAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILK 379
Query: 94 IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKF 153
G +C V ++++D YAKC L ++H F
Sbjct: 380 -NGHGGSCY-----------------------------VGSAIMDMYAKCGRLDLAHQTF 409
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG 213
I KD V WN+M+ + G EE +L +M M T + + +S+S L+ACA +
Sbjct: 410 IGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGT--KYDCVSISAALSACANLPA 467
Query: 214 VKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISA 262
+ GK IH +++R I + + CG + +C VF+ + ++ V WNSII+A
Sbjct: 468 LHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAA 527
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------LGTGS 312
+ G++ D+L+L ++ ++P+ VT ++++ AC + +G LG +
Sbjct: 528 YGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMA 587
Query: 313 FV--WNALIDMYGRCGAIQKSRKIFVLMP 339
+ + ++D++GR G + ++ + MP
Sbjct: 588 RMEHYACMVDLFGRAGRLNEAFGMINSMP 616
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 98/238 (41%), Gaps = 53/238 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+ LG ++H H++ G ++GS +++++ W SM+
Sbjct: 367 LTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITS 426
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ G EE ++LF M G + D AC+ L GK+++ +M+ F +
Sbjct: 427 CSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSD 486
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ L+D++ KCG +++ +F+ M+ +K
Sbjct: 487 LFAESALIDMYSKCGNLDLACRVFDTME------------------------------EK 516
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+ VSWN+++A Y G ++ NL M+ +QP+ ++ +++AC V G
Sbjct: 517 NEVSWNSIIAAYGNHGRLKDSLNLFH--GMLGDGIQPDHVTFLAIISACGHAGQVDEG 572
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 83/208 (39%), Gaps = 28/208 (13%)
Query: 171 YALGGFREEVTNLLDEMEM-IQTD--MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH 227
+ L F N+ ++ I D + P +S +L C G+ G+ H +L +
Sbjct: 19 FKLKSFHTNSVNIGKPLQFSIHNDDSLAPQLVS---ILQTCTDPSGLSQGRQAHAQMLVN 75
Query: 228 HIHLSTACG------FVICSC-----SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL 276
I + G +V+C ++F QL WN +I F GQ AL
Sbjct: 76 GIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFY 135
Query: 277 RDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRC 325
++ P+ T V+ AC L ++ G FV ++LI Y
Sbjct: 136 FKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSEN 195
Query: 326 GAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G I +R +F MP K+ V WNVM++ Y
Sbjct: 196 GCIHDARYLFDRMPSKDGVLWNVMLNGY 223
>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
Length = 886
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 112/431 (25%), Positives = 182/431 (42%), Gaps = 108/431 (25%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN----WTSMMGMYNVLGYYEEIVNLFYLMID 58
LG V A + CG A S L V + W ++ + G+ + + + M+
Sbjct: 85 LGTGVVASYLACGATKDAL--SVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLR 142
Query: 59 KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEI 118
G +PDHF P KAC EL Y G+ ++ + FE N V L+ ++ +CG +E
Sbjct: 143 AGTKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLED 202
Query: 119 TSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFRE 178
S +F+E+ + + D++SWN+++A + G
Sbjct: 203 ASLVFDEITRKGI---------------------------DDVISWNSIVAAHVKGSNPR 235
Query: 179 EVTNLLDEMEMI----QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH------ 228
L EM MI T+ + + IS+ +L ACA +K + K IH Y +R+
Sbjct: 236 TALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAF 295
Query: 229 -----IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV-------------- 269
I CG + + VFN + +DVV WN++++ + +SG
Sbjct: 296 VCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKEN 355
Query: 270 ---------------------VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
+ALD + +I+ +PN+VTI+S+L AC L AL QG+
Sbjct: 356 IPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGM 415
Query: 309 GTGSF-----------------------VWNALIDMYGRCGAIQKSRKIFVLMP--HKNL 343
++ V+NALIDMY +C + + +R IF +P +N+
Sbjct: 416 EIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNV 475
Query: 344 VSWNVMISVYG 354
V+W VMI Y
Sbjct: 476 VTWTVMIGGYA 486
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 155/338 (45%), Gaps = 47/338 (13%)
Query: 62 RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSG 121
R D + AC+ LK K+++ Y I +A V L+D + KCG M
Sbjct: 256 RSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVK 315
Query: 122 LFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK----DLVSWNAMLAGYALGGF 176
+F M+ +D + N+++ Y + + F ++++ D+++W+A++AGYA G
Sbjct: 316 VFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGC 375
Query: 177 REEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH--------- 227
+E + +MI +PN++++ +L+ACA + + G IH Y L+
Sbjct: 376 SQEALDAF--QQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDF 433
Query: 228 --------------HIHLSTACGFVICSCSVFNQLSTRD--VVVWNSIISAFVRSGQVVD 271
I + + C + S+F+ + R+ VV W +I + + G D
Sbjct: 434 GGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSND 493
Query: 272 ALDLLRDVIVAN--VKPNTVTIVSVLPACLKLAALPQGLGTGS-------------FVWN 316
AL + ++I V PN TI +L AC LAAL G + FV N
Sbjct: 494 ALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVAN 553
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
LIDMY +CG + +R +F MP +N VSW M+S YG
Sbjct: 554 CLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYG 591
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 157/349 (44%), Gaps = 46/349 (13%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W++++ Y G +E ++ F MI G P+ + AC+ L G +++ Y
Sbjct: 362 TWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYS 421
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ K+ LL L G L +V N+LID Y+KCR K +
Sbjct: 422 L----------KKCLLSLDNDFGGDGDGEDL--------MVYNALIDMYSKCRSFKAARS 463
Query: 152 KFSKI--KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F I +++++V+W M+ GYA G + + EM + PN ++S +L ACA
Sbjct: 464 IFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACA 523
Query: 210 QVKGVKLGKAIHGYVLRHH-------------IHLSTACGFVICSCSVFNQLSTRDVVVW 256
+ +++GK IH YV RHH I + + CG V + +VF+ + R+ V W
Sbjct: 524 HLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSW 583
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG------- 309
S++S + G+ +ALD+ + A P+ ++ + +L AC + QGL
Sbjct: 584 TSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRR 643
Query: 310 -----TGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ + +ID+ RCG + K+ K MP + V W ++S
Sbjct: 644 DYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSA 692
>gi|302788029|ref|XP_002975784.1| hypothetical protein SELMODRAFT_150748 [Selaginella moellendorffii]
gi|300156785|gb|EFJ23413.1| hypothetical protein SELMODRAFT_150748 [Selaginella moellendorffii]
Length = 590
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 103/393 (26%), Positives = 185/393 (47%), Gaps = 60/393 (15%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G QVH L+ G+E +GS L++++ W M+ Y+
Sbjct: 162 GRQVHGRLVSLGLETDVAVGSALVQLYVKCGNLEDAKKAFDRVEKRDVLCWNFMLSAYSE 221
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G ++++ + M V P+ V ACS ++D G+ V+ ++S E + +
Sbjct: 222 RGSPQQVIEAYDAM---DVEPNAVTYTNVLIACSAMEDLAQGQKVHSRIVSSGLETDMTM 278
Query: 103 KRPLLDLFIKCGRMEITSGLFEEM---DQDFLVNNSLIDFYAKCRYLKVSHCKFS--KIK 157
+ LL L+IKC ++ +FE M D D + + +L++ YA C L+ + F + +
Sbjct: 279 ETSLLSLYIKCRSLKSACQVFEAMGKKDTDVVTDTALLNMYAACGNLEAAKRVFGSRRDE 338
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
++D+V W AM+A YA G EE L M + +++PN+++ + VL+AC+ + + G
Sbjct: 339 RRDVVFWTAMIASYAQAGRGEEALALYKTM--LSEEIKPNSVTYTSVLSACSSLGNILEG 396
Query: 218 KAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
+ IH + L A CG + + S F ++ RDV W +++AF
Sbjct: 397 RKIHSSLEGKAEELDVAVQNSLLSLYARCGSLRDAWSCFAKIHNRDVFSWTGMVAAFAHH 456
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA--------- 317
G AL+L+R++ + V P+ VT SVL AC +L +G SFV A
Sbjct: 457 GHSARALELVREMELCGVSPDAVTFQSVLHACSHEGSLERGW--ASFVSMAVDYAVEPSK 514
Query: 318 -----LIDMYGRCGAIQKSRKI--FVLMPHKNL 343
++D+ R G + ++R++ FV + +++
Sbjct: 515 DHYLCMVDLLARAGRLAEAREVIQFVGLERESM 547
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 164/350 (46%), Gaps = 64/350 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W+ M+G Y G E LF M +G+RP+ C V ACS + GK V+ Y+
Sbjct: 8 SWSMMIGAYAQNGRRNEAFLLFERMESEGIRPNAVTCLHVLGACSCQNELPFGKKVHAYI 67
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ +F+ D + SL++ YAKC L+ +
Sbjct: 68 SASEFK------------------------------WDISLQTSLVNMYAKCGNLEGARK 97
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+++++KD++SW+ M++ Y G E + ME +T ++PN ++ GV+ AC
Sbjct: 98 VFNRLERKDVISWSTMISAYNQSGRHSEAIEIYRLMES-ETSVEPNAVTFVGVIGACTGC 156
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACG------FVIC-----SCSVFNQLSTRDVVVWNSII 260
V G+ +HG ++ + A G +V C + F+++ RDV+ WN ++
Sbjct: 157 GDVIRGRQVHGRLVSLGLETDVAVGSALVQLYVKCGNLEDAKKAFDRVEKRDVLCWNFML 216
Query: 261 SAFVRSG---QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ----------- 306
SA+ G QV++A D + +V+PN VT +VL AC + L Q
Sbjct: 217 SAYSERGSPQQVIEAYDAM------DVEPNAVTYTNVLIACSAMEDLAQGQKVHSRIVSS 270
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK--NLVSWNVMISVYG 354
GL T + +L+ +Y +C +++ + ++F M K ++V+ ++++Y
Sbjct: 271 GLETDMTMETSLLSLYIKCRSLKSACQVFEAMGKKDTDVVTDTALLNMYA 320
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/381 (22%), Positives = 166/381 (43%), Gaps = 93/381 (24%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W++M+ YN G + E + ++ LM + V P+ V AC+ D G+ V+
Sbjct: 109 SWSTMISAYNQSGRHSEAIEIYRLMESETSVEPNAVTFVGVIGACTGCGDVIRGRQVHGR 168
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
++S+ E D V ++L+ Y KC L+ +
Sbjct: 169 LVSLGLE------------------------------TDVAVGSALVQLYVKCGNLEDAK 198
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F +++++D++ WN ML+ Y+ G ++V D M D++PN ++ + VL AC+
Sbjct: 199 KAFDRVEKRDVLCWNFMLSAYSERGSPQQVIEAYDAM-----DVEPNAVTYTNVLIACSA 253
Query: 211 VKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQL----------- 248
++ + G+ +H + L + + T+ C + +C VF +
Sbjct: 254 MEDLAQGQKVHSRIVSSGLETDMTMETSLLSLYIKCRSLKSACQVFEAMGKKDTDVVTDT 313
Query: 249 ------------------------STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV 284
RDVV W ++I+++ ++G+ +AL L + ++ +
Sbjct: 314 ALLNMYAACGNLEAAKRVFGSRRDERRDVVFWTAMIASYAQAGRGEEALALYKTMLSEEI 373
Query: 285 KPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRK 333
KPN+VT SVL AC L + +G S V N+L+ +Y RCG+++ +
Sbjct: 374 KPNSVTYTSVLSACSSLGNILEGRKIHSSLEGKAEELDVAVQNSLLSLYARCGSLRDAWS 433
Query: 334 IFVLMPHKNLVSWNVMISVYG 354
F + ++++ SW M++ +
Sbjct: 434 CFAKIHNRDVFSWTGMVAAFA 454
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 121/223 (54%), Gaps = 29/223 (13%)
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
++QK++ SW+ M+ YA G R E L + ME ++PN ++ VL AC+ +
Sbjct: 1 MQQKNVYSWSMMIGAYAQNGRRNEAFLLFERME--SEGIRPNAVTCLHVLGACSCQNELP 58
Query: 216 LGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
GK +H Y+ + I L T+ CG + + VFN+L +DV+ W+++ISA+
Sbjct: 59 FGKKVHAYISASEFKWDISLQTSLVNMYAKCGNLEGARKVFNRLERKDVISWSTMISAYN 118
Query: 265 RSGQVVDALDLLRDV-IVANVKPNTVTIVSVLPACL-------------KLAALPQGLGT 310
+SG+ +A+++ R + +V+PN VT V V+ AC +L +L GL T
Sbjct: 119 QSGRHSEAIEIYRLMESETSVEPNAVTFVGVIGACTGCGDVIRGRQVHGRLVSL--GLET 176
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V +AL+ +Y +CG ++ ++K F + ++++ WN M+S Y
Sbjct: 177 DVAVGSALVQLYVKCGNLEDAKKAFDRVEKRDVLCWNFMLSAY 219
>gi|255565109|ref|XP_002523547.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537254|gb|EEF38886.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 555
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 157/321 (48%), Gaps = 53/321 (16%)
Query: 56 MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR 115
M+ G+RPD P V KAC++ + + G +++ + + F
Sbjct: 1 MVRNGIRPDDHTFPFVLKACADNLNVQKGMEIHGCVFKLGF------------------- 41
Query: 116 MEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGG 175
D D V N+L+ FY YL + F ++ ++D+VSWN +L +++ G
Sbjct: 42 -----------DFDVFVGNTLLLFYGNTGYLSDAKKVFDEMLERDVVSWNTLLGAFSVNG 90
Query: 176 FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHL 231
F + +L EM + ++ +PN +++ VL CA ++ + IH YV++ + L
Sbjct: 91 FYLKALDLFYEMNL-RSGFRPNMVTVVSVLPVCAALEDEVVASEIHCYVVKIGLDSQVTL 149
Query: 232 STA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV 284
A CG + S VF+++ R+ V WN+II++ DAL+ R +I V
Sbjct: 150 CNALVDVYGKCGNLKSSRRVFDEMMERNEVSWNAIITSLAYMEHNKDALEAFRLMINEEV 209
Query: 285 KPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRK 333
KPN+VTI S+LP ++L +L G+ + F+ N+LIDMY + G ++
Sbjct: 210 KPNSVTIASILPVLVELEHFDLGKEIHGFSLRFGIESDVFISNSLIDMYAKSGHSTQASV 269
Query: 334 IFVLMPHKNLVSWNVMISVYG 354
+F LM KN+VSWN M++ +
Sbjct: 270 VFHLMTEKNVVSWNAMVANFA 290
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 95/395 (24%), Positives = 183/395 (46%), Gaps = 79/395 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G+++H + G + F+G+ LL + N W +++G ++V
Sbjct: 29 GMEIHGCVFKLGFDFDVFVGNTLLLFYGNTGYLSDAKKVFDEMLERDVVSWNTLLGAFSV 88
Query: 43 LGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G+Y + ++LFY M + G RP+ V C+ L+D V +++ Y++ I +
Sbjct: 89 NGFYLKALDLFYEMNLRSGFRPNMVTVVSVLPVCAALEDEVVASEIHCYVVKIGLDSQVT 148
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ L+D++ KCG ++ + +F+EM +++
Sbjct: 149 LCNALVDVYGKCGNLKSSRRVFDEM------------------------------MERNE 178
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEME-MIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
VSWNA++ A + E + L+ MI +++PN+++++ +L +++ LGK I
Sbjct: 179 VSWNAIITSLA---YMEHNKDALEAFRLMINEEVKPNSVTIASILPVLVELEHFDLGKEI 235
Query: 221 HGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
HG+ LR I + G + VF+ ++ ++VV WN++++ F ++
Sbjct: 236 HGFSLRFGIESDVFISNSLIDMYAKSGHSTQASVVFHLMTEKNVVSWNAMVANFAQNRFE 295
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNAL 318
+ A++L+R + PN VT + LPAC ++ A G FV NAL
Sbjct: 296 LAAIELVRQMQTDGAIPNPVTFTNALPACARMGFLRPGKEIHARAFRMGCYFDQFVSNAL 355
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
DMY +CG + +R +F + ++ VS+N++I Y
Sbjct: 356 TDMYAKCGFLNLARNVFNI-SLRDEVSYNILIVGY 389
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 162/342 (47%), Gaps = 57/342 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ + + ++ + F LMI++ V+P+ + EL+ + +GK+++ +
Sbjct: 180 SWNAIITSLAYMEHNKDALEAFRLMINEEVKPNSVTIASILPVLVELEHFDLGKEIHGF- 238
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
S++F ++ D ++NSLID YAK + +
Sbjct: 239 -SLRFG----------------------------IESDVFISNSLIDMYAKSGHSTQASV 269
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ-PNTISLSGVLAACAQ 210
F + +K++VSWNAM+A +A F L+ +M QTD PN ++ + L ACA+
Sbjct: 270 VFHLMTEKNVVSWNAMVANFAQNRFELAAIELVRQM---QTDGAIPNPVTFTNALPACAR 326
Query: 211 VKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSI 259
+ ++ GK IH R + CGF+ + +VFN +S RD V +N +
Sbjct: 327 MGFLRPGKEIHARAFRMGCYFDQFVSNALTDMYAKCGFLNLARNVFN-ISLRDEVSYNIL 385
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------L 308
I + ++ ++L L ++ + ++ + V+ + V+ AC L AL QG L
Sbjct: 386 IVGYSQTTNSSESLSLFLEMGLVGMERDVVSYMGVIAACASLVALKQGEEIHALVVRKNL 445
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
F+ N+L+D Y +CG I + KIF + K+ SWN +I
Sbjct: 446 HMHIFIANSLLDFYTKCGKIDLACKIFYRISEKDAASWNTII 487
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 150/317 (47%), Gaps = 41/317 (12%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGV 61
+LG ++H + G+E F+ + L++ MY G+ + +F+LM +K V
Sbjct: 230 DLGKEIHGFSLRFGIESDVFISNSLID----------MYAKSGHSTQASVVFHLMTEKNV 279
Query: 62 RP-----DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK----RPLLDLFIK 112
+F + A EL ++ AC + RP ++ +
Sbjct: 280 VSWNAMVANFAQNRFELAAIELVRQMQTDGAIPNPVTFTNALPACARMGFLRPGKEIHAR 339
Query: 113 CGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYA 172
RM G + DQ V+N+L D YAKC +L ++ F+ I +D VS+N ++ GY+
Sbjct: 340 AFRM----GCY--FDQ--FVSNALTDMYAKCGFLNLARNVFN-ISLRDEVSYNILIVGYS 390
Query: 173 LGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS 232
E +L EM ++ M+ + +S GV+AACA + +K G+ IH V+R ++H+
Sbjct: 391 QTTNSSESLSLFLEMGLV--GMERDVVSYMGVIAACASLVALKQGEEIHALVVRKNLHMH 448
Query: 233 -----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281
T CG + +C +F ++S +D WN+II G++ A++L +
Sbjct: 449 IFIANSLLDFYTKCGKIDLACKIFYRISEKDAASWNTIILGVGMLGELEAAINLFEAMRE 508
Query: 282 ANVKPNTVTIVSVLPAC 298
V+ ++V+ ++VL AC
Sbjct: 509 DGVEYDSVSYIAVLSAC 525
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
+ NSL+DFY KC + ++ F +I +KD SWN ++ G + G E NL + M
Sbjct: 450 FIANSLLDFYTKCGKIDLACKIFYRISEKDAASWNTIILGVGMLGELEAAINLFEAMR-- 507
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGK 218
+ ++ +++S VL+AC+ V+ GK
Sbjct: 508 EDGVEYDSVSYIAVLSACSHGGLVEKGK 535
>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 2000
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/373 (26%), Positives = 175/373 (46%), Gaps = 56/373 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+ + Y G+ E + LF +++ V+P+ V +AC+ L D+ +G V +
Sbjct: 151 SWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLGMSVLGLI 210
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSH 150
+ +E + V L+ L ++ G + + +F+ M++ +V+ +++D Y + L +
Sbjct: 211 VKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEMDELGEAR 270
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ Q++ VSW+AM+A Y G+ EE L MIQ +PN S +L+A A
Sbjct: 271 RIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLF--CRMIQEGFKPNISCFSSILSALAS 328
Query: 211 VKGVKLGKAIHGYVLR----HHIHLSTACGFVICSCS----------------------- 243
V+ ++ G IHG+V + + +S++ + C C
Sbjct: 329 VEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSWNAM 388
Query: 244 ---------------VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288
+FN + R+ V W++II+ + Q + ++ ++I+ PN
Sbjct: 389 VGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEIPNK 448
Query: 289 VTIVSVLPACLKLAALPQG---------LGT--GSFVWNALIDMYGRCGAIQKSRKIFVL 337
T S+L AC A+L +G LG ++V AL DMY + G I+ S+K+F
Sbjct: 449 STFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIESSKKVFNR 508
Query: 338 MPHKNLVSWNVMI 350
MP KN VSW MI
Sbjct: 509 MPKKNEVSWTAMI 521
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 92/374 (24%), Positives = 154/374 (41%), Gaps = 84/374 (22%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W++M+ Y GY EE + LF MI +G +P+ + A + ++ + G +++ ++
Sbjct: 283 SWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSILSALASVEALQAGMNIHGHV 342
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I FE + V L+D++ KCG E D FL
Sbjct: 343 TKIGFEKDVFVSSSLIDMYCKCG---------ETKDGRFL-------------------- 373
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNL------------------------LDEM 187
F I +K++VSWNAM+ GY+L G EE L DEM
Sbjct: 374 -FDTILEKNMVSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEM 432
Query: 188 -----EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVIC-- 240
EMI PN + S +L ACA + GK +HG +++ I T G +
Sbjct: 433 FEVFNEMILLGEIPNKSTFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDM 492
Query: 241 ---------SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV-IVANVKPNTVT 290
S VFN++ ++ V W ++I SG ++L L ++ +++ PN V
Sbjct: 493 YAKSGDIESSKKVFNRMPKKNEVSWTAMIQGLAESGLAEESLTLFEEMEKTSSIAPNEVM 552
Query: 291 IVSVLPACLKLAALPQ------------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLM 338
++VL AC + + GL + ++DM R G + ++ + M
Sbjct: 553 FLAVLFACSHSGLVDKGLWYFNSMEAVYGLKPKGRHFTCVVDMLSRAGRLFEAEEFIYSM 612
Query: 339 P-HKNLVSWNVMIS 351
P +W ++S
Sbjct: 613 PFQPETNAWAALLS 626
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 147/318 (46%), Gaps = 57/318 (17%)
Query: 92 ISIKFEG-NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVS 149
IS F+G + V ++ ++ G ++ LF+EM Q ++ +LI + K ++ S
Sbjct: 78 ISKDFDGFDLVVHNCMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGRVRES 137
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + +++VSW A ++GY GF E L +++++++++PN ++ + V+ ACA
Sbjct: 138 MWYFERNPFQNVVSWTAAISGYVQNGFSVEAMKLF--IKLLESEVKPNKVTFTSVVRACA 195
Query: 210 QVKGVKLGKAIHGYVLR----HHIHLS----TAC---GFVICSCSVFNQLSTRDVVVWNS 258
+ LG ++ G +++ H + +S T C G + + VF+++ +DVV W +
Sbjct: 196 NLGDFGLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTA 255
Query: 259 IISAFV-------------------------------RSGQVVDALDLLRDVIVANVKPN 287
I+ +V +SG ++L L +I KPN
Sbjct: 256 ILDLYVEMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPN 315
Query: 288 TVTIVSVLPACLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFV 336
S+L A + AL G+ FV ++LIDMY +CG + R +F
Sbjct: 316 ISCFSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFD 375
Query: 337 LMPHKNLVSWNVMISVYG 354
+ KN+VSWN M+ Y
Sbjct: 376 TILEKNMVSWNAMVGGYS 393
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 106/243 (43%), Gaps = 31/243 (12%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++ G+ +H H+ G E F+ S L++++C +W +M+G
Sbjct: 332 LQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSWNAMVGG 391
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y++ G+ EE LF +M VR ++ + + + + +V++ MI + N
Sbjct: 392 YSLNGHMEEAKYLFNIM---PVR-NNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEIPN 447
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQ-----DFLVNNSLIDFYAKCRYLKVSHCKFS 154
LL ++ L ++ + D V +L D YAK ++ S F+
Sbjct: 448 KSTFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIESSKKVFN 507
Query: 155 KIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGV 214
++ +K+ VSW AM+ G A G EE L +EME + + PN + VL AC+ V
Sbjct: 508 RMPKKNEVSWTAMIQGLAESGLAEESLTLFEEMEKTSS-IAPNEVMFLAVLFACSHSGLV 566
Query: 215 KLG 217
G
Sbjct: 567 DKG 569
>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
Length = 716
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 108/412 (26%), Positives = 195/412 (47%), Gaps = 83/412 (20%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH 65
Q HAH++ G+ L + +++F L ++ ++ +F M+ +G+ PD
Sbjct: 30 QAHAHILKTGISL-----PETIQIFSK----------LNHFGHVIRVFSYMLTQGIVPDS 74
Query: 66 FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEE 125
V P V K C+ L + GK ++ + + ++ V LL ++++ ++ +F++
Sbjct: 75 RVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDK 134
Query: 126 MDQDFLVNNS-LIDFYAKCRYLKVSHCKFSKIK----QKDLVSWNAMLAGYALGGFREEV 180
+ Q +V +S LI +A+ +K + F + + + +LVSWN M++G+ G +
Sbjct: 135 LPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDA 194
Query: 181 TNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVI- 239
+ M + ++P+ S+S VL A + +G IH YV++ + FV+
Sbjct: 195 VLMFQNMHL--EGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDK---FVVS 249
Query: 240 --------CSCS-----VFNQLSTRDV--------------------------------- 253
C+C+ VFN++ DV
Sbjct: 250 ALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNV 309
Query: 254 VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF 313
V W S+I++ ++G+ ++AL+L R++ + VKPN+VTI +LPAC +AAL G F
Sbjct: 310 VSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCF 369
Query: 314 -----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V +ALIDMY +CG + SR F +MP++NLVSWN +++ Y
Sbjct: 370 SLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYA 421
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 162/347 (46%), Gaps = 29/347 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W M+ +N G Y + V +F M +G++PD V A +L +G ++ Y+
Sbjct: 177 SWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYV 236
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSH 150
I + V L+D++ KC SG+F EMD+ D N+L+ ++ + +
Sbjct: 237 IKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNAL 296
Query: 151 CKFSKIKQKDL--VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
F + K DL VSW +M+A + G E L EM++ ++PN++++ +L AC
Sbjct: 297 EVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQI--EGVKPNSVTIPCLLPAC 354
Query: 209 AQVKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWN 257
+ + GKA H + LR+ I + CG ++ S F+ + R++V WN
Sbjct: 355 GNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWN 414
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL--------- 308
S+++ + G+ +A+++ + KP+ V+ VL AC + +G
Sbjct: 415 SLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRN 474
Query: 309 -GTGSFV--WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMIS 351
G + + ++ ++ + GR G ++++ + MP + W ++S
Sbjct: 475 HGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLS 521
>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
Length = 566
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/393 (24%), Positives = 189/393 (48%), Gaps = 48/393 (12%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G Q+H H+ G+ F+ + L+ ++ +W S++ Y+
Sbjct: 106 GEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQ 165
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+++I+ LF LM ++GV+ D KV AC+ L DY + + Y+ E + +
Sbjct: 166 CNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYL 225
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
L+D F + G+++ +F M ++ + N++I YAK + + + F +I +KDL
Sbjct: 226 GNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDL 285
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
+SW++M++GY+ + + +M+ + ++P+ I ++ V+++CA + + LGK +H
Sbjct: 286 ISWSSMISGYSQANHFSDALEIFRQMQ--RAKVKPDAIVIASVVSSCAHLGALDLGKWVH 343
Query: 222 GYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
YV R++I T CG + VF ++ +D + WNSII +G
Sbjct: 344 EYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEK 403
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNAL 318
++L+L + ++ +PN VT + VL AC + +GL + + +
Sbjct: 404 ESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCV 463
Query: 319 IDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+D+ GR G ++K+ + MP + V W +++
Sbjct: 464 VDLLGRAGQLEKALRFITEMPIDPDPVVWRILL 496
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/344 (21%), Positives = 150/344 (43%), Gaps = 85/344 (24%)
Query: 60 GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEIT 119
G+ PD+ P + KAC+ + G+ +++++ +
Sbjct: 82 GMVPDNLTFPFILKACARINALNEGEQMHNHITKL------------------------- 116
Query: 120 SGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREE 179
GL D V+NSLI YA C L + F ++ KD+VSWN+++ GY+ ++
Sbjct: 117 -GLL----SDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKD 171
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGF-- 237
+ L M+ ++ + +++ V++AC ++ + + Y+ + I + G
Sbjct: 172 ILALFKLMQ--NEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTL 229
Query: 238 ----------------------------------------VICSCSVFNQLSTRDVVVWN 257
++ + +F+Q+ +D++ W+
Sbjct: 230 VDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWS 289
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------- 307
S+IS + ++ DAL++ R + A VKP+ + I SV+ +C L AL G
Sbjct: 290 SMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRN 349
Query: 308 -LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ + + N+LIDMY +CG+ +++ ++F M K+ +SWN +I
Sbjct: 350 NIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSII 393
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 107/228 (46%), Gaps = 24/228 (10%)
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
+H F +I+ WN ++ G A + + + M P+ ++ +L AC
Sbjct: 40 AHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQ--GGGMVPDNLTFPFILKAC 97
Query: 209 AQVKGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWN 257
A++ + G+ +H ++ + IHL ACG + + SVF+++ +DVV WN
Sbjct: 98 ARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWN 157
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------- 307
S+I + + + D L L + + VK + VT++ V+ AC +L
Sbjct: 158 SLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDY 217
Query: 308 -LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ ++ N L+D +GR G +Q + K+F M +N+V+ N MI+ Y
Sbjct: 218 CIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYA 265
>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
lyrata]
gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
lyrata]
Length = 1057
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 104/398 (26%), Positives = 182/398 (45%), Gaps = 74/398 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q+HAH++ G E A L + L++ + +WT+++
Sbjct: 265 LEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSG 324
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y ++E + LF M G++PD F C + +C+ L G V+ Y I GN
Sbjct: 325 YKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQVHAYTIKANL-GN 383
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D V NSLID YAKC L + F
Sbjct: 384 -----------------------------DSYVTNSLIDMYAKCDCLTEARKVFDIFAAD 414
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDM-QPNTISLSGVLAACAQVKGVKLGK 218
D+V +NAM+ GY+ G + E+ + L+ ++ + +P+ ++ +L A A + + L K
Sbjct: 415 DVVLFNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSK 474
Query: 219 AIHGYVLRHHIHLSTACGFVI------CSCS-----VFNQLSTRDVVVWNSIISAFVRSG 267
IHG + + ++L G + C C VF+++ +D+V+WNS+ S +V+
Sbjct: 475 QIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQS 534
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWN 316
+ +AL+L ++ ++ +P+ T V ++ A LA+L +GL ++ N
Sbjct: 535 ENEEALNLFLELQLSRDRPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKRGLECNPYITN 594
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
AL+DMY +CG+ + + K F +++V WN +IS Y
Sbjct: 595 ALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYA 632
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/347 (25%), Positives = 157/347 (45%), Gaps = 57/347 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WT+M+ +G + LFY +++ V PD ++ V ACS L GK ++ ++
Sbjct: 216 TWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLSACSILPFLEGGKQIHAHI 275
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ E +A + L+D ++KCGR ++ +H
Sbjct: 276 LRYGHEKDASLMNVLIDSYVKCGR------------------------------VRAAHK 305
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + K+++SW +L+GY +E L M + ++P+ + S +L +CA +
Sbjct: 306 LFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMP--KFGLKPDMFACSSILTSCASL 363
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ G +H Y ++ + I + C + + VF+ + DVV++N++I
Sbjct: 364 HALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMI 423
Query: 261 SAFVRSG---QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQ 306
+ R G ++ DAL++ D+ ++P+ +T VS+L A L +L
Sbjct: 424 EGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKF 483
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
GL F +ALI +Y C ++ SR +F M K+LV WN M S Y
Sbjct: 484 GLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGY 530
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 93/391 (23%), Positives = 171/391 (43%), Gaps = 74/391 (18%)
Query: 7 VHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNVLGY 45
VH +IV G+EL +L + L+ ++ W++M+ N G+
Sbjct: 66 VHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHGF 125
Query: 46 YEEIVNLFY-LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
YEE + +F + P+ ++ +ACS L +G+
Sbjct: 126 YEESLVVFLDFWRTRKNSPNEYILSSFIQACSGL------------------DGSGRWMV 167
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
L F+ R D+D V LIDFY K + + F + +K V+W
Sbjct: 168 FQLQSFLVKSR----------FDRDVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTW 217
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
M++G G +L ++++ ++ P+ LS VL+AC+ + ++ GK IH ++
Sbjct: 218 TTMISGCVKMG--RSYVSLQLFYQLMEGNVVPDGYILSTVLSACSILPFLEGGKQIHAHI 275
Query: 225 LRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
LR+ I CG V + +F+ + ++++ W +++S + ++ +A+
Sbjct: 276 LRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAM 335
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMY 322
+L + +KP+ S+L +C L AL G LG S+V N+LIDMY
Sbjct: 336 ELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMY 395
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+C + ++RK+F + ++V +N MI Y
Sbjct: 396 AKCDCLTEARKVFDIFAADDVVLFNAMIEGY 426
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/398 (23%), Positives = 171/398 (42%), Gaps = 79/398 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+E G QVHA+ I + +++ + L++++ + +M+
Sbjct: 366 LEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEG 425
Query: 40 YNVLGYYEEI---VNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKF 96
Y+ LG E+ +N+F+ M + +RP + +A + L + K ++ M KF
Sbjct: 426 YSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMF--KF 483
Query: 97 EGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKI 156
N LD+F ++LI Y+ C LK S F ++
Sbjct: 484 GLN-------LDIF---------------------AGSALIAVYSNCYCLKDSRLVFDEM 515
Query: 157 KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKL 216
K KDLV WN+M +GY EE NL E+++ + +P+ + ++ A + ++L
Sbjct: 516 KVKDLVIWNSMFSGYVQQSENEEALNLFLELQLSRD--RPDEFTFVDMVTAAGNLASLQL 573
Query: 217 GKAIH-----------GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVR 265
G+ H Y+ + + CG + F+ ++RDVV WNS+IS++
Sbjct: 574 GQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYAN 633
Query: 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----------- 314
G+ AL +L ++ ++PN +T V VL AC + GL +
Sbjct: 634 HGEGRKALQMLEKMMCEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEH 693
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHKN-LVSWNVMIS 351
+ ++ + GR G + ++R++ MP K + W ++S
Sbjct: 694 YVCMVSLLGRAGRLNEARELIEKMPTKPAAIVWRSLLS 731
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 126/273 (46%), Gaps = 30/273 (10%)
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
PLL + G++ I SGL + D ++N L++ Y++ + + F K+ +++LV+W
Sbjct: 59 PLLYHNVVHGQI-IVSGL----ELDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTW 113
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG----------- 213
+ M++ GF EE + + + + PN LS + AC+ + G
Sbjct: 114 STMVSACNHHGFYEESLVVFLDFWRTRKN-SPNEYILSSFIQACSGLDGSGRWMVFQLQS 172
Query: 214 --VKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
VK YV I G + + VF+ L + V W ++IS V+ G+
Sbjct: 173 FLVKSRFDRDVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYV 232
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNALID 320
+L L ++ NV P+ + +VL AC L L G + + N LID
Sbjct: 233 SLQLFYQLMEGNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLID 292
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
Y +CG ++ + K+F MP+KN++SW ++S Y
Sbjct: 293 SYVKCGRVRAAHKLFDGMPNKNIISWTTLLSGY 325
>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
Length = 1031
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/393 (24%), Positives = 189/393 (48%), Gaps = 48/393 (12%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G Q+H H+ G+ F+ + L+ ++ +W S++ Y+
Sbjct: 571 GEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQ 630
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+++I+ LF LM ++GV+ D KV AC+ L DY + + Y+ E + +
Sbjct: 631 CNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYL 690
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
L+D F + G+++ +F M ++ + N++I YAK + + + F +I +KDL
Sbjct: 691 GNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDL 750
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
+SW++M++GY+ + + +M+ + ++P+ I ++ V+++CA + + LGK +H
Sbjct: 751 ISWSSMISGYSQANHFSDALEIFRQMQ--RAKVKPDAIVIASVVSSCAHLGALDLGKWVH 808
Query: 222 GYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
YV R++I T CG + VF ++ +D + WNSII +G
Sbjct: 809 EYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEK 868
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNAL 318
++L+L + ++ +PN VT + VL AC + +GL + + +
Sbjct: 869 ESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCV 928
Query: 319 IDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+D+ GR G ++K+ + MP + V W +++
Sbjct: 929 VDLLGRAGQLEKALRFITEMPIDPDPVVWRILL 961
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 75/344 (21%), Positives = 150/344 (43%), Gaps = 85/344 (24%)
Query: 60 GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEIT 119
G+ PD+ P + KAC+ + G+ +++++ +
Sbjct: 547 GMVPDNLTFPFILKACARINALNEGEQMHNHITKL------------------------- 581
Query: 120 SGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREE 179
GL D V+NSLI YA C L + F ++ KD+VSWN+++ GY+ ++
Sbjct: 582 -GLL----SDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKD 636
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGF-- 237
+ L M+ ++ + +++ V++AC ++ + + Y+ + I + G
Sbjct: 637 ILALFKLMQ--NEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTL 694
Query: 238 ----------------------------------------VICSCSVFNQLSTRDVVVWN 257
++ + +F+Q+ +D++ W+
Sbjct: 695 VDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWS 754
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------- 307
S+IS + ++ DAL++ R + A VKP+ + I SV+ +C L AL G
Sbjct: 755 SMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRN 814
Query: 308 -LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ + + N+LIDMY +CG+ +++ ++F M K+ +SWN +I
Sbjct: 815 NIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSII 858
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 160/351 (45%), Gaps = 32/351 (9%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +++ Y+ + ++ + LF D + KAC+ L R ++ ++
Sbjct: 58 WHALLKAYSHGPHPQDALQLFR-HARWHAADDTYAFTFALKACAGLGWPRCCMQLHGLVV 116
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHC 151
FE V L++++I CG + + FEEM V+ N +I +A ++ +
Sbjct: 117 RKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVVITGFAGWGEVEYARL 176
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +++VSW+ M+ GY E L M+ + P+ I++ V+ A + V
Sbjct: 177 LFERMPCRNVVSWSGMIDGYTRACRPVEAVALF--RRMMAEGISPSEITVLAVVPALSNV 234
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQ-LSTRDVVVWNSI 259
+ +G+A+HGY + I L G + S VF++ L R++V W SI
Sbjct: 235 GKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSWTSI 294
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-TGSFVWN-- 316
IS F G V A++L D+ A ++PN +T +SVL AC + QG+ S ++
Sbjct: 295 ISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYN 354
Query: 317 ---------ALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMI---SVYG 354
+IDM GR G ++++ +I P + N W ++ S YG
Sbjct: 355 INPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYG 405
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 108/231 (46%), Gaps = 24/231 (10%)
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
L +H F +I+ WN ++ G A + + + M P+ ++ +L
Sbjct: 502 LVFAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQ--GGGMVPDNLTFPFIL 559
Query: 206 AACAQVKGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVV 254
ACA++ + G+ +H ++ + IHL ACG + + SVF+++ +DVV
Sbjct: 560 KACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVV 619
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------- 307
WNS+I + + + D L L + + VK + VT++ V+ AC +L
Sbjct: 620 SWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYI 679
Query: 308 ----LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ ++ N L+D +GR G +Q + K+F M +N+V+ N MI+ Y
Sbjct: 680 EDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYA 730
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/350 (24%), Positives = 143/350 (40%), Gaps = 39/350 (11%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVG-----KD 86
+WTS++ + + G + V LF M G+RP+ V ACS G
Sbjct: 290 SWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSM 349
Query: 87 VYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN------NSLIDFY 140
+Y+Y I+ + C+ +D+ + GR+ E++ +DF V +L+
Sbjct: 350 IYEYNINPDVKHFGCI----IDMLGRAGRLREA----EQIIRDFPVEVNATVWRTLLGCC 401
Query: 141 AKCRYLKVSHCKFSKIKQ------KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDM 194
+K +++ KI D V + ML E V L+D+ +++
Sbjct: 402 SKYGEVEMGERTMKKILALEREFGGDFVVLSNMLTELRRFSDAEIVRKLVDQRNSVKSFF 461
Query: 195 QPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVV 254
+ L A V G+ VLR + L F + VF+Q+
Sbjct: 462 NIVRMEAIKRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVF---AHKVFDQIEAPTTF 518
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-------- 306
+WN +I +S DA+ + + P+ +T +L AC ++ AL +
Sbjct: 519 LWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHI 578
Query: 307 ---GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
GL + FV N+LI +Y CG + +R +F M K++VSWN +I Y
Sbjct: 579 TKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGY 628
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 12/127 (9%)
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
I S + +Q+ R W++++ A+ DAL L R + +T L AC
Sbjct: 41 IHSQLIAHQVFDRRPTPWHALLKAYSHGPHPQDALQLFRHA-RWHAADDTYAFTFALKAC 99
Query: 299 LKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
L + +G ++V AL+++Y CG + SR F MP KN VSWN
Sbjct: 100 AGLGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWN 159
Query: 348 VMISVYG 354
V+I+ +
Sbjct: 160 VVITGFA 166
>gi|255562460|ref|XP_002522236.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538489|gb|EEF40094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 640
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/396 (25%), Positives = 181/396 (45%), Gaps = 75/396 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
++ G +VH+ + G+ + LG++L+ ++ N W M+
Sbjct: 115 LQEGKKVHSFISSSGIFVDGLLGTKLVFMYVNCGDIREGRVIFDKIANEKVFLWNLMLSG 174
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y +G +EE V LF M+D G++ + + K + L + G+ V+ Y++ + F
Sbjct: 175 YAKIGAFEESVYLFRKMLDLGIQVNSHTVSCILKCFAALGSVKEGEWVHGYLLKLGF--- 231
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
G + V NSLI FY K R ++ ++ F ++K +
Sbjct: 232 ---------------------GSYNT------VVNSLISFYFKTRKIEAAYEVFDELKNR 264
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSWN+M++G E+ + EM + + ++L VLAACA LG+
Sbjct: 265 DIVSWNSMISGTVANDLPEKGIQVFKEMLYLGVSF--DLVTLVNVLAACANSGNFPLGRV 322
Query: 220 IHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H + ++ + + + CG + + VF ++ R VV W S+I+ + R G
Sbjct: 323 LHAFAIKAQLDQRMTFVNTLLDMYSKCGDLNNAIRVFQKMGERSVVSWTSLIAGYAREGL 382
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW-----------NA 317
+ + L ++ V+P+ T+ +VL AC +L G +V N+
Sbjct: 383 SGEGIRLFHEMEREGVRPDNFTVTAVLHACACSGSLEIGKDVHDYVKENNMQKDRIVCNS 442
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L+DMY +CG+++ + +F+ MP+K++VSWN MI Y
Sbjct: 443 LMDMYAKCGSMEDANLVFLEMPNKDIVSWNTMIGGY 478
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 116/399 (29%), Positives = 192/399 (48%), Gaps = 62/399 (15%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNL---FYLMI 57
++LGIQV++H + C ++ A LGS + E W + G Y +VN FY
Sbjct: 192 LDLGIQVNSHTVSCILKCFAALGS-VKE--GEWVHGYLLKLGFGSYNTVVNSLISFYFKT 248
Query: 58 DKGVRPDHFVCPKVYKACSELKDY-----------RVGKDVYDYMISIKFE----GNACV 102
K Y+ ELK+ V D+ + I + E G +
Sbjct: 249 RK--------IEAAYEVFDELKNRDIVSWNSMISGTVANDLPEKGIQVFKEMLYLGVSFD 300
Query: 103 KRPLLDLFIKC--------GRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFS 154
L+++ C GR+ + ++DQ N+L+D Y+KC L + F
Sbjct: 301 LVTLVNVLAACANSGNFPLGRVLHAFAIKAQLDQRMTFVNTLLDMYSKCGDLNNAIRVFQ 360
Query: 155 KIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGV 214
K+ ++ +VSW +++AGYA G E L EME + ++P+ +++ VL ACA +
Sbjct: 361 KMGERSVVSWTSLIAGYAREGLSGEGIRLFHEME--REGVRPDNFTVTAVLHACACSGSL 418
Query: 215 KLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAF 263
++GK +H YV +++ + CG + + VF ++ +D+V WN++I +
Sbjct: 419 EIGKDVHDYVKENNMQKDRIVCNSLMDMYAKCGSMEDANLVFLEMPNKDIVSWNTMIGGY 478
Query: 264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-------TGSF--- 313
++G+ + L L +V +KP+ T+ +LPAC LAAL +G G F
Sbjct: 479 SKNGRPNETLHLFV-AMVQELKPDGRTMACILPACASLAALDRGREIHGYIQRNGCFDDL 537
Query: 314 -VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
V NALIDMY +CGA+ +R F ++P K+L+SW VMI+
Sbjct: 538 HVANALIDMYAKCGALALARLFFDMIPVKDLISWTVMIA 576
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 127/258 (49%), Gaps = 28/258 (10%)
Query: 119 TSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFRE 178
+SG+F D L+ L+ Y C ++ F KI + + WN ML+GYA G E
Sbjct: 127 SSGIF----VDGLLGTKLVFMYVNCGDIREGRVIFDKIANEKVFLWNLMLSGYAKIGAFE 182
Query: 179 EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-----HHIHLST 233
E L +M+ +Q N+ ++S +L A + VK G+ +HGY+L+ ++ +++
Sbjct: 183 ESVYLF--RKMLDLGIQVNSHTVSCILKCFAALGSVKEGEWVHGYLLKLGFGSYNTVVNS 240
Query: 234 ACGF------VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
F + + VF++L RD+V WNS+IS V + + + ++++ V +
Sbjct: 241 LISFYFKTRKIEAAYEVFDELKNRDIVSWNSMISGTVANDLPEKGIQVFKEMLYLGVSFD 300
Query: 288 TVTIVSVLPACLKLAALPQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIFV 336
VT+V+VL AC P G +F N L+DMY +CG + + ++F
Sbjct: 301 LVTLVNVLAACANSGNFPLGRVLHAFAIKAQLDQRMTFVNTLLDMYSKCGDLNNAIRVFQ 360
Query: 337 LMPHKNLVSWNVMISVYG 354
M +++VSW +I+ Y
Sbjct: 361 KMGERSVVSWTSLIAGYA 378
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 31/139 (22%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+G Y+ G E ++LF M+ + ++PD + AC+ L G++++ Y+
Sbjct: 470 SWNTMIGGYSKNGRPNETLHLFVAMVQE-LKPDGRTMACILPACASLAALDRGREIHGYI 528
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ N C D V N+LID YAKC L ++
Sbjct: 529 -----QRNGCF-------------------------DDLHVANALIDMYAKCGALALARL 558
Query: 152 KFSKIKQKDLVSWNAMLAG 170
F I KDL+SW M+AG
Sbjct: 559 FFDMIPVKDLISWTVMIAG 577
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 16/138 (11%)
Query: 231 LSTACGFVICSCSVFNQLSTRD---VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
LS++ + S+F+ + + + +N I G + +A++LL +N+ N
Sbjct: 41 LSSSLHSSYATLSIFSSPAKEEDFKIADFNRKICELCEVGSLKNAIELLDMYPKSNIDSN 100
Query: 288 TVTIVSVLPACLKLAALPQGLGTGSFVWNA-----------LIDMYGRCGAIQKSRKIFV 336
T S+L C +L +L +G SF+ ++ L+ MY CG I++ R IF
Sbjct: 101 TY--CSILQLCAELNSLQEGKKVHSFISSSGIFVDGLLGTKLVFMYVNCGDIREGRVIFD 158
Query: 337 LMPHKNLVSWNVMISVYG 354
+ ++ + WN+M+S Y
Sbjct: 159 KIANEKVFLWNLMLSGYA 176
>gi|224101423|ref|XP_002312273.1| predicted protein [Populus trichocarpa]
gi|222852093|gb|EEE89640.1| predicted protein [Populus trichocarpa]
Length = 745
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 105/400 (26%), Positives = 185/400 (46%), Gaps = 81/400 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEV---------------------FCNWTSMMGM 39
++L +H +++ V+ C L + L+E+ F +WTSM+
Sbjct: 216 LKLAKSIHGYIVRRRVDTCEALDNSLIEMYSSCDDLYSAERIFVNMANKTFISWTSMIYC 275
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS--IKFE 97
YN G+++E +F M++ V P+ V K+CS L R GK ++ Y + + F+
Sbjct: 276 YNRSGWFKEAFEIFVKMLELKVEPNVITIMGVLKSCSGLSWLREGKLIHCYALKKGMTFQ 335
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK--FSK 155
+ C+ L++L+ CG K+ +C+
Sbjct: 336 DD-CLGPVLIELYAGCG--------------------------------KLGYCEKVLLA 362
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
I ++++VSWN +L+ A G EE L +M+ + + + SLS ++AC V ++
Sbjct: 363 IGERNVVSWNTLLSINARQGLFEEALVLFVQMQ--KRGLMLDFFSLSSAISACGNVGSLQ 420
Query: 216 LGKAIHGYVLRH----------HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVR 265
LG+ IHGY ++ I + + CGF + +FN + + V WNSIIS FV+
Sbjct: 421 LGRQIHGYAIKRCILGEFVKNALIGMYSRCGFSDSAYMIFNDIKQKSSVAWNSIISGFVQ 480
Query: 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFV 314
SG ++A+ L+ + + +K V +S + AC + L + G+ ++
Sbjct: 481 SGNSIEAIHLVDQMYLNCLKITDVVFLSAIQACADMVCLEKGKWLHHKLIMYGVEKDLYI 540
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
AL DMY +CG ++ + +F M K++VSW+ MIS YG
Sbjct: 541 ETALTDMYAKCGDLRTAEGVFHSMSEKSVVSWSAMISGYG 580
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 102/396 (25%), Positives = 177/396 (44%), Gaps = 75/396 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLL----EVFC-----------------NWTSMMGM 39
M +G +VH +I CG + F+ + LL E+ C +W+S++
Sbjct: 115 MFIGAKVHGRIIKCGFDNDPFIETSLLGLYGELGCLTDARKVFDDIPVRDLVSWSSIISS 174
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G E + +F L++++ V+ D + V +ACS+L ++ K ++ Y+
Sbjct: 175 YVDKGEANEALEMFRLLVNERVKLDWVIMLSVTEACSKLGILKLAKSIHGYI-------- 226
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V+R R++ L +NSLI+ Y+ C L + F + K
Sbjct: 227 --VRR----------RVDTCEAL----------DNSLIEMYSSCDDLYSAERIFVNMANK 264
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+SW +M+ Y G+ +E + ++M++ ++PN I++ GVL +C+ + ++ GK
Sbjct: 265 TFISWTSMIYCYNRSGWFKEAFEIF--VKMLELKVEPNVITIMGVLKSCSGLSWLREGKL 322
Query: 220 IHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
IH Y L+ I L CG + V + R+VV WN+++S R G
Sbjct: 323 IHCYALKKGMTFQDDCLGPVLIELYAGCGKLGYCEKVLLAIGERNVVSWNTLLSINARQG 382
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGT----------GSFVWNA 317
+AL L + + + ++ S + AC + +L G G FV NA
Sbjct: 383 LFEEALVLFVQMQKRGLMLDFFSLSSAISACGNVGSLQLGRQIHGYAIKRCILGEFVKNA 442
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
LI MY RCG + IF + K+ V+WN +IS +
Sbjct: 443 LIGMYSRCGFSDSAYMIFNDIKQKSSVAWNSIISGF 478
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/391 (23%), Positives = 170/391 (43%), Gaps = 76/391 (19%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMG--------------MYNVL-------G 44
Q+HAHL V + A ++L+E + S+ M+ VL
Sbjct: 19 QLHAHLSVTNLSNTAQASTKLIESYAQMGSIKSSTLVFETYQNPDSFMWGVLIKCHVWSH 78
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
+EE + L+ M+ + FV P V +AC+ D +G V+ +
Sbjct: 79 AFEEAILLYDKMLCNEAQITSFVFPSVLRACAGFGDMFIGAKVHGRI------------- 125
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
IKCG D D + SL+ Y + L + F I +DLVSW
Sbjct: 126 ------IKCG-----------FDNDPFIETSLLGLYGELGCLTDARKVFDDIPVRDLVSW 168
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
+++++ Y G E + ++ ++ + + + V AC+++ +KL K+IHGY+
Sbjct: 169 SSIISSYVDKGEANEALEMF--RLLVNERVKLDWVIMLSVTEACSKLGILKLAKSIHGYI 226
Query: 225 LRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
+R I + ++C + + +F ++ + + W S+I + RSG +A
Sbjct: 227 VRRRVDTCEALDNSLIEMYSSCDDLYSAERIFVNMANKTFISWTSMIYCYNRSGWFKEAF 286
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGSFVWN-----ALIDM 321
++ ++ V+PN +TI+ VL +C L+ L +G L G + LI++
Sbjct: 287 EIFVKMLELKVEPNVITIMGVLKSCSGLSWLREGKLIHCYALKKGMTFQDDCLGPVLIEL 346
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
Y CG + K+ + + +N+VSWN ++S+
Sbjct: 347 YAGCGKLGYCEKVLLAIGERNVVSWNTLLSI 377
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 151/330 (45%), Gaps = 55/330 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ + G +EE + LF M +G+ D F AC + ++G+ ++ Y
Sbjct: 370 SWNTLLSINARQGLFEEALVLFVQMQKRGLMLDFFSLSSAISACGNVGSLQLGRQIHGYA 429
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I KR +L F+K N+LI Y++C + ++
Sbjct: 430 I----------KRCILGEFVK---------------------NALIGMYSRCGFSDSAYM 458
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ IKQK V+WN++++G+ G E +L+D+M + ++ + + ACA +
Sbjct: 459 IFNDIKQKSSVAWNSIISGFVQSGNSIEAIHLVDQMYL--NCLKITDVVFLSAIQACADM 516
Query: 212 KGVKLGKAIHG----YVLRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
++ GK +H Y + +++ TA CG + + VF+ +S + VV W+++I
Sbjct: 517 VCLEKGKWLHHKLIMYGVEKDLYIETALTDMYAKCGDLRTAEGVFHSMSEKSVVSWSAMI 576
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLG 309
S + G++ A+ ++ +KPN +T +++L AC ++ Q G+
Sbjct: 577 SGYGMHGRIDAAITFFNQMVELGIKPNHITFMNILSACSHSGSVEQGKFYFDLMRDFGVE 636
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
S + L+D+ R G + + KI MP
Sbjct: 637 PSSEHFACLVDLLSRAGDVNGAYKIINSMP 666
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 123/274 (44%), Gaps = 29/274 (10%)
Query: 107 LDLFIKCGRMEITSGLFEEMDQDFLVNNS-----LIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ LF C + + L + L N + LI+ YA+ +K S F + D
Sbjct: 5 MPLFRSCKTLRQLNQLHAHLSVTNLSNTAQASTKLIESYAQMGSIKSSTLVFETYQNPDS 64
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
W ++ + EE L D+M + + Q + VL ACA + +G +H
Sbjct: 65 FMWGVLIKCHVWSHAFEEAILLYDKM--LCNEAQITSFVFPSVLRACAGFGDMFIGAKVH 122
Query: 222 GYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
G +++ + L G + + VF+ + RD+V W+SIIS++V G+
Sbjct: 123 GRIIKCGFDNDPFIETSLLGLYGELGCLTDARKVFDDIPVRDLVSWSSIISSYVDKGEAN 182
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNALI 319
+AL++ R ++ VK + V ++SV AC KL L + + T + N+LI
Sbjct: 183 EALEMFRLLVNERVKLDWVIMLSVTEACSKLGILKLAKSIHGYIVRRRVDTCEALDNSLI 242
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+MY C + + +IFV M +K +SW MI Y
Sbjct: 243 EMYSSCDDLYSAERIFVNMANKTFISWTSMIYCY 276
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 166/344 (48%), Gaps = 54/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W ++G Y YEE L M+ GV+PD + + AC++ K+ G +++ +
Sbjct: 172 SWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLI 231
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
++ ++ + V L+++ IKCG ++ LKV
Sbjct: 232 LNAGWDTDLFVGTALINMHIKCGGVDDA--------------------------LKV--- 262
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ + ++DL++W +M+ G A ++ NL ME + +QP+ ++ +L AC
Sbjct: 263 -FNNLPRRDLITWTSMITGLARHRQFKQACNLFQVME--EEGVQPDKVAFVSLLKACNHP 319
Query: 212 KGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ ++ GK +H YV + + T CG + + VFN + R+VV W ++I
Sbjct: 320 EALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMI 379
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG----------- 309
+ F + G++ +A +I + ++PN VT +S+L AC + +AL QG
Sbjct: 380 AGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYI 439
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
T V AL+ MY +CG++ +R +F + +N+V+WN MI+ Y
Sbjct: 440 TDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAY 483
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 101/398 (25%), Positives = 180/398 (45%), Gaps = 77/398 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLL-------------EVF--------CNWTSMMGM 39
+E G +VHA + G++ ++G+ LL EVF +WT+M+
Sbjct: 322 LEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAG 381
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ G EE F MI+ G+ P+ + ACS + G+ ++D +I +
Sbjct: 382 FAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGY--- 438
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
IT D V +L+ YAKC L + F +I ++
Sbjct: 439 ------------------IT---------DDRVRTALLSMYAKCGSLMDARNVFERISKQ 471
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEME-MIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
++V+WNAM+ Y E+ N + + +++ ++P++ + + +L C ++LGK
Sbjct: 472 NVVAWNAMITAYVQ---HEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGK 528
Query: 219 AIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
+ ++R +H+ A CG ++ + ++FN + RD+V WN+II+ FV+ G
Sbjct: 529 WVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHG 588
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA---------- 317
+ A D + + + VKP+ +T +L AC AL +G + + A
Sbjct: 589 ENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGT 648
Query: 318 -LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
LI MY +CG+I + +F +P KN+ SW MI+ Y
Sbjct: 649 GLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYA 686
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 123/254 (48%), Gaps = 24/254 (9%)
Query: 123 FEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTN 182
F ++ D + N LI YAKC + F ++ KD+ SWN +L GY EE
Sbjct: 132 FSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFR 191
Query: 183 LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHL 231
L ++M +Q ++P+ + +L ACA K V G + +L I++
Sbjct: 192 LHEQM--VQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINM 249
Query: 232 STACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI 291
CG V + VFN L RD++ W S+I+ R Q A +L + + V+P+ V
Sbjct: 250 HIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAF 309
Query: 292 VSVLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340
VS+L AC AL Q GL T +V AL+ MY +CG+++ + ++F L+
Sbjct: 310 VSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKG 369
Query: 341 KNLVSWNVMISVYG 354
+N+VSW MI+ +
Sbjct: 370 RNVVSWTAMIAGFA 383
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/322 (22%), Positives = 139/322 (43%), Gaps = 56/322 (17%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y Y+ V F ++ +G++PD + C +GK V +I
Sbjct: 476 WNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLII 535
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
FE + ++ L+ +F+ CG + L
Sbjct: 536 RAGFESDLHIRNALVSMFVNCGDLMSAMNL------------------------------ 565
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ-TDMQPNTISLSGVLAACAQV 211
F+ + ++DLVSWN ++AG+ G E D +M+Q + ++P+ I+ +G+L ACA
Sbjct: 566 FNDMPERDLVSWNTIIAGFVQHG---ENQFAFDYFKMMQESGVKPDQITFTGLLNACASP 622
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ + G+ +H + I + T CG + + VF+ L ++V W S+I
Sbjct: 623 EALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMI 682
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
+ + + G+ +AL+L + VKP+ +T V L AC + +GL +
Sbjct: 683 TGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMKDFNIE 742
Query: 315 -----WNALIDMYGRCGAIQKS 331
+ ++D++GR G + ++
Sbjct: 743 PRMEHYGCMVDLFGRAGLLHEA 764
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 57/108 (52%), Gaps = 11/108 (10%)
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG--------- 307
N+ ++ ++GQ+ +A+ +L V +++ + T S+L C+K L G
Sbjct: 73 NAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKF 132
Query: 308 --LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ F+WN LI MY +CG +++IF MP K++ SWN+++ Y
Sbjct: 133 SKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGY 180
>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15130
gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 689
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/396 (23%), Positives = 179/396 (45%), Gaps = 75/396 (18%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G QVH +L+ G L + L++++C +W+++M + +
Sbjct: 25 GGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVL 84
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G + ++LF M +G+ P+ F KAC L G ++ + + I FE
Sbjct: 85 NGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFE----- 139
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+ ++ G NSL+D Y+KC + + F +I + L+
Sbjct: 140 ------MMVEVG-------------------NSLVDMYSKCGRINEAEKVFRRIVDRSLI 174
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SWNAM+AG+ G+ + + M+ +P+ +L+ +L AC+ + GK IHG
Sbjct: 175 SWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHG 234
Query: 223 YVLRHHIH-------------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
+++R H L CG++ + F+Q+ + ++ W+S+I + + G+
Sbjct: 235 FLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEF 294
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL-----------GTGSFVWNAL 318
V+A+ L + + N + ++ + S++ A L QG G + V N++
Sbjct: 295 VEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSV 354
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+DMY +CG + ++ K F M K+++SW V+I+ YG
Sbjct: 355 VDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYG 390
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/401 (20%), Positives = 174/401 (43%), Gaps = 81/401 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G+Q+H + G E+ +G+ L++++ +W +M+
Sbjct: 123 LEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAG 182
Query: 40 YNVLGYYEEIVNLFYLMIDKGV--RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
+ GY + ++ F +M + + RPD F + KACS GK ++ +++ F
Sbjct: 183 FVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFH 242
Query: 98 --GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSK 155
+A + L+DL++KCG YL + F +
Sbjct: 243 CPSSATITGSLVDLYVKCG------------------------------YLFSARKAFDQ 272
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA------ 209
IK+K ++SW++++ GYA G E L ++ + + Q ++ +LS ++ A
Sbjct: 273 IKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNS--QIDSFALSSIIGVFADFALLR 330
Query: 210 -----QVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
Q VKL + VL + + CG V + F ++ +DV+ W +I+ +
Sbjct: 331 QGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYG 390
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV---------- 314
+ G ++ + +++ N++P+ V ++VL AC + +G S +
Sbjct: 391 KHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRV 450
Query: 315 --WNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
+ ++D+ GR G +++++ + MP K N+ W ++S+
Sbjct: 451 EHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSL 491
>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
Length = 890
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 111/426 (26%), Positives = 177/426 (41%), Gaps = 108/426 (25%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN-----WTSMMGMYNVLGYYEEIVNLFYLMI 57
LG V A + CG A L +LE W ++ + G + +N+ M+
Sbjct: 91 LGTGVVASYLACGATDYALL---VLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRML 147
Query: 58 DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRME 117
G RPDHF P V KAC EL YR G + + FE N + L+ ++ +CG +E
Sbjct: 148 RAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLE 207
Query: 118 ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFR 177
S +F+E+ Q + D++SWN++++ +
Sbjct: 208 EASMIFDEITQRGI---------------------------DDVISWNSIVSAHVKSSNA 240
Query: 178 EEVTNLLDEMEMI----QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----- 228
+L +M +I T+ + + IS+ +L AC +K V K +HG +R+
Sbjct: 241 WTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDV 300
Query: 229 ------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV------------ 270
I CG + + VFN + +DVV WN++++ + +SG
Sbjct: 301 FVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKE 360
Query: 271 -----------------------DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
+AL+L R +I + PN VTI+SVL AC L A QG
Sbjct: 361 NIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQG 420
Query: 308 LGTGSF---------------------VWNALIDMYGRCGAIQKSRKIFVLMP--HKNLV 344
++ V+NALIDMY +C + + +R IF +P +N+V
Sbjct: 421 TEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVV 480
Query: 345 SWNVMI 350
+W VMI
Sbjct: 481 TWTVMI 486
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 97/349 (27%), Positives = 158/349 (45%), Gaps = 48/349 (13%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WT+++ Y+ G E +NLF MI G P+ V AC+ L + G +++ Y
Sbjct: 368 TWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYS 427
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ K LL L F D+D +V N+LID Y+KCR K +
Sbjct: 428 L----------KNCLLTL----------DNDFGGEDEDLMVYNALIDMYSKCRSFKAARS 467
Query: 152 KFSKI--KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F I +++++V+W M+ G+A G + L EM + PN ++S +L ACA
Sbjct: 468 IFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACA 527
Query: 210 QVKGVKLGKAIHGYVLRHHIHLSTA-------------CGFVICSCSVFNQLSTRDVVVW 256
+ +++GK IH YVLRHH + S+A CG V + VF+ +S + + W
Sbjct: 528 HLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISW 587
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG------- 309
S+++ + G+ +ALD+ + A P+ +T + VL AC + QGL
Sbjct: 588 TSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSA 647
Query: 310 -----TGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ + ID+ R G + K+ + MP V W ++S
Sbjct: 648 DYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSA 696
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 151/336 (44%), Gaps = 45/336 (13%)
Query: 62 RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSG 121
R D + AC LK K+V+ I + V L+D + KCG ME
Sbjct: 262 RSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVK 321
Query: 122 LFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK----DLVSWNAMLAGYALGGF 176
+F M+ +D + N+++ Y++ + + F ++++ D+V+W A++AGY+ G
Sbjct: 322 VFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGC 381
Query: 177 REEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH--------- 227
E NL +MI + PN +++ VL+ACA + G IH Y L++
Sbjct: 382 SHEALNLF--RQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDF 439
Query: 228 ------------HIHLSTACGFVICSCSVFNQ--LSTRDVVVWNSIISAFVRSGQVVDAL 273
I + + C + S+F+ L R+VV W +I + G DAL
Sbjct: 440 GGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDAL 499
Query: 274 DLLRDVIVA--NVKPNTVTIVSVLPACLKLAALPQGL-------------GTGSFVWNAL 318
L ++I V PN TI +L AC LAA+ G + FV N L
Sbjct: 500 KLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCL 559
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
IDMY +CG + +R +F M K+ +SW M++ YG
Sbjct: 560 IDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYG 595
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 115/232 (49%), Gaps = 33/232 (14%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
++ V WN ++ + G + N+ M++ +P+ +L VL AC ++
Sbjct: 112 LERVTPSPAVWWNLLIREHIKQGRLDSAINV--SCRMLRAGTRPDHFTLPHVLKACGELP 169
Query: 213 GVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTR---DVVVWNS 258
+ G A HG ++ + + + CG + + +F++++ R DV+ WNS
Sbjct: 170 SYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNS 229
Query: 259 IISAFVRSGQVVDALDLLRDVIV------ANVKPNTVTIVSVLPACLKLAALPQ------ 306
I+SA V+S ALDL + + N + + ++IV++LPAC L A+PQ
Sbjct: 230 IVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHG 289
Query: 307 -----GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G FV NALID Y +CG ++ + K+F +M K++VSWN M++ Y
Sbjct: 290 NAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGY 341
>gi|255591025|ref|XP_002535423.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223523164|gb|EEF26960.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 563
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/395 (26%), Positives = 186/395 (47%), Gaps = 81/395 (20%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
E+G V H++ G ++G+ L++++ +W S++ Y
Sbjct: 50 EIGNVVQNHVLEIGFGFDLYIGNALVDMYARFGDLVKARNVFEEMTHRDIVSWNSLISGY 109
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+ GY++E + ++Y + G++PD+F V AC L
Sbjct: 110 SANGYWDEALEIYYELRIAGLKPDNFTLSSVLPACGGL---------------------- 147
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEE--MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
L +K G E+ GL E+ M+ D +++N L+ Y K L + F+K+
Sbjct: 148 --------LAVKEG--EVIHGLVEKLGMNIDVIMSNGLLSMYFKFGRLMDAQRVFNKMVV 197
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
KD VSWN ++ GY EE L EM +P+ ++++ VL AC ++ ++ GK
Sbjct: 198 KDYVSWNTLICGYCQMELFEESIQLFREM---VKRFRPDLLTITSVLRACGLLRDLEFGK 254
Query: 219 AIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
+H Y+LR I CG ++ S F+++ RD V WN++I+ +++S
Sbjct: 255 FVHDYILRSGIEFDVTASNIVIDTYAKCGDLLASRKAFDRIKCRDSVSWNTLINGYIQSR 314
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LGTGS--FVWN 316
+ + L + + + ++KP+++T V++L +LA G LG S V N
Sbjct: 315 SYGEGVKLFKKMKM-DLKPDSITFVTLLSISTRLADTELGKEIHCDLAKLGFDSDLVVSN 373
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
AL+DMY +CG ++ S K+F M +++V+WN +I+
Sbjct: 374 ALVDMYSKCGNVKDSLKVFENMKVRDIVTWNTIIA 408
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 101/347 (29%), Positives = 165/347 (47%), Gaps = 56/347 (16%)
Query: 30 FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
+ +W +++ Y + +EE + LF M+ K RPD V +AC L+D GK V+D
Sbjct: 200 YVSWNTLICGYCQMELFEESIQLFREMV-KRFRPDLLTITSVLRACGLLRDLEFGKFVHD 258
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
Y++ SG+ + D +N +ID YAKC L S
Sbjct: 259 YILR--------------------------SGI----EFDVTASNIVIDTYAKCGDLLAS 288
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F +IK +D VSWN ++ GY E L +M+M D++P++I+ +L+
Sbjct: 289 RKAFDRIKCRDSVSWNTLINGYIQSRSYGEGVKLFKKMKM---DLKPDSITFVTLLSIST 345
Query: 210 QVKGVKLGKAIH------GY-----VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
++ +LGK IH G+ V + + + CG V S VF + RD+V WN+
Sbjct: 346 RLADTELGKEIHCDLAKLGFDSDLVVSNALVDMYSKCGNVKDSLKVFENMKVRDIVTWNT 405
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LG 309
II+A V++ A ++ + + P+ T++ +LP C +AA QG G
Sbjct: 406 IIAACVQAEDCTLAFRMISQMRNEELIPDMGTLLGILPICSLIAAKRQGKEVHACTFKFG 465
Query: 310 TGSF--VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
S V NALI+MY +C ++ ++F M K++V+W ++S YG
Sbjct: 466 FESTVPVGNALIEMYSKCSNLKYCIRVFEDMKTKDVVTWTALVSAYG 512
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 166/343 (48%), Gaps = 55/343 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ G + + ++L++ M D V+PD + P V AC+ L D+ +G V ++++
Sbjct: 1 WNSVIRALTHNGLFSKALDLYFKMKDFNVKPDTYTFPSVINACAALGDFEIGNVVQNHVL 60
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
I F DL+I N+L+D YA+ L +
Sbjct: 61 EIGFG---------FDLYI---------------------GNALVDMYARFGDLVKARNV 90
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ +D+VSWN++++GY+ G+ +E + E+ + ++P+ +LS VL AC +
Sbjct: 91 FEEMTHRDIVSWNSLISGYSANGYWDEALEIYYELRI--AGLKPDNFTLSSVLPACGGLL 148
Query: 213 GVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIIS 261
VK G+ IHG V + +++ G ++ + VFN++ +D V WN++I
Sbjct: 149 AVKEGEVIHGLVEKLGMNIDVIMSNGLLSMYFKFGRLMDAQRVFNKMVVKDYVSWNTLIC 208
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW------ 315
+ + +++ L R+ +V +P+ +TI SVL AC L L G ++
Sbjct: 209 GYCQMELFEESIQLFRE-MVKRFRPDLLTITSVLRACGLLRDLEFGKFVHDYILRSGIEF 267
Query: 316 -----NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
N +ID Y +CG + SRK F + ++ VSWN +I+ Y
Sbjct: 268 DVTASNIVIDTYAKCGDLLASRKAFDRIKCRDSVSWNTLINGY 310
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/343 (21%), Positives = 141/343 (41%), Gaps = 69/343 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G VH +++ G+E + +++ + +W +++
Sbjct: 250 LEFGKFVHDYILRSGIEFDVTASNIVIDTYAKCGDLLASRKAFDRIKCRDSVSWNTLING 309
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y Y E V LF M ++PD + + L D +GK+++ + + F
Sbjct: 310 YIQSRSYGEGVKLFKKM-KMDLKPDSITFVTLLSISTRLADTELGKEIHCDLAKLGF--- 365
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D D +V+N+L+D Y+KC +K S F +K +
Sbjct: 366 ---------------------------DSDLVVSNALVDMYSKCGNVKDSLKVFENMKVR 398
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEM--EMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
D+V+WN ++A + E L M +M ++ P+ +L G+L C+ + + G
Sbjct: 399 DIVTWNTIIAACV----QAEDCTLAFRMISQMRNEELIPDMGTLLGILPICSLIAAKRQG 454
Query: 218 KAIHGYVLRHHIHLSTACGFVI----CSCS-------VFNQLSTRDVVVWNSIISAFVRS 266
K +H + + G + CS VF + T+DVV W +++SA+
Sbjct: 455 KEVHACTFKFGFESTVPVGNALIEMYSKCSNLKYCIRVFEDMKTKDVVTWTALVSAYGMY 514
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG 309
G+ AL ++ A + P+ + V+++ AC ++ +GL
Sbjct: 515 GEGKKALRAFAEMEEAGIIPDHIAFVAIIYACSHSGSVEEGLA 557
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 171/343 (49%), Gaps = 27/343 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y G+ E +N + M +G++PD V +C++L+D +G++ + Y+
Sbjct: 175 SWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYI 234
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSH 150
+ + L+D+++KCG +E LF+ M +V+ +++ YA+ L ++
Sbjct: 235 EENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAW 294
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ KD+V WNAM+ GY +E L +EM+ + ++ P+ +++ L+AC+Q
Sbjct: 295 KLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAM--NINPDEVTMVSCLSACSQ 352
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ + +G IH Y+ +H + L+ A CG + + VF +L R+ + W +I
Sbjct: 353 LGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAI 412
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----- 314
IS G A+ ++I +V P+ VT + +L AC + +G S +
Sbjct: 413 ISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFN 472
Query: 315 -------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVM 349
++ ++D+ GR G ++++ ++ MP + V W +
Sbjct: 473 LSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGAL 515
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 157/345 (45%), Gaps = 85/345 (24%)
Query: 60 GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEIT 119
G +PD++ P ++KAC+ L R+G ++ +++ + F
Sbjct: 102 GTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGF----------------------- 138
Query: 120 SGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREE 179
D D V+N++I C L + F K +DLVSWN+M+ GY G+ E
Sbjct: 139 -------DSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYE 191
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS------- 232
N EM++ ++P+ +++ GV+++CAQ++ + LG+ H Y+ + + L+
Sbjct: 192 ALNFYREMKV--EGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANAL 249
Query: 233 -----------------------------------TACGFVICSCSVFNQLSTRDVVVWN 257
G + + +F+++ +DVV WN
Sbjct: 250 MDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWN 309
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV--- 314
++I +V + + +AL L ++ N+ P+ VT+VS L AC +L AL G+ ++
Sbjct: 310 AMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKH 369
Query: 315 --------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
ALIDMY +CG I K+ ++F +P +N ++W +IS
Sbjct: 370 ELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIIS 414
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 135/284 (47%), Gaps = 40/284 (14%)
Query: 105 PLLDLFIKCGRME---------ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK--F 153
P L L KC + + +GL E D ++ LI F A + + +C
Sbjct: 8 PFLSLLEKCKSISQLKQIQSQMVLTGLIE----DGFASSRLIAFCAISEWRDLDYCTNIL 63
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNTISLSGVLAACAQVK 212
+ + SWN + G+ E L + +Q D +P+ + + ACA++
Sbjct: 64 FNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRV--LQCDGTKPDNYTYPLLFKACARLS 121
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+++G I G+VL IHL +CG + + +F++ RD+V WNS+I+
Sbjct: 122 LIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMIN 181
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------- 314
+VR G +AL+ R++ V +KP+ VT++ V+ +C +L L G + ++
Sbjct: 182 GYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKL 241
Query: 315 ----WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
NAL+DMY +CG ++ +RK+F M +K +VSW M+ Y
Sbjct: 242 TVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYA 285
>gi|242096002|ref|XP_002438491.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
gi|241916714|gb|EER89858.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
Length = 794
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/365 (25%), Positives = 166/365 (45%), Gaps = 72/365 (19%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M+ + G E + + Y M+ +GVRPD ACS+L+ +G++++ Y+
Sbjct: 236 TWNTMVSLLVQSGRCGEAIEVLYDMVARGVRPDGVTFASALPACSQLEMLSLGREMHAYV 295
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ ++ + V ++L+D YA + +
Sbjct: 296 LKDA-----------------------------DLAANSFVASALVDMYASHERVGAARL 326
Query: 152 KFSKIK--QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + ++ L WNAM+ GYA G E+ L ME + + P+ +++GVL +CA
Sbjct: 327 VFDMVPAGERQLGLWNAMICGYAQAGLDEDALELFARME-TEAGVVPSETTIAGVLPSCA 385
Query: 210 QVKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ + +A+HGYV++ + L G + + +F + RDVV WN+
Sbjct: 386 RSETFAGKEAVHGYVVKRGMADNPFVQNALMDLYARLGDMDAARWIFATIEPRDVVSWNT 445
Query: 259 IISAFVRSGQVVDALDLLRDVIVAN------------------VKPNTVTIVSVLPACLK 300
+I+ V G + DA L+R++ V PN +T++++LP C
Sbjct: 446 LITGCVVQGHIRDAFQLVREMQQQGRFTDAATEDGIAGADEEPVVPNNITLMTLLPGCAM 505
Query: 301 LAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
LAA +G L + V +AL+DMY +CG + SR +F +P +N+++WNV+
Sbjct: 506 LAAPARGKEIHGYAVRHALDSDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNVITWNVL 565
Query: 350 ISVYG 354
I YG
Sbjct: 566 IMAYG 570
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 88/358 (24%), Positives = 151/358 (42%), Gaps = 73/358 (20%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M+ Y G E+ + LF M + GV P V +C+ + + + V+ Y+
Sbjct: 341 WNAMICGYAQAGLDEDALELFARMETEAGVVPSETTIAGVLPSCARSETFAGKEAVHGYV 400
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
VKR + D + V N+L+D YA+ + +
Sbjct: 401 ----------VKRGMAD--------------------NPFVQNALMDLYARLGDMDAARW 430
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI----------------QTDMQ 195
F+ I+ +D+VSWN ++ G + G + L+ EM+ + +
Sbjct: 431 IFATIEPRDVVSWNTLITGCVVQGHIRDAFQLVREMQQQGRFTDAATEDGIAGADEEPVV 490
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACG------FVICSC-----SV 244
PN I+L +L CA + GK IHGY +RH + A G + C C +V
Sbjct: 491 PNNITLMTLLPGCAMLAAPARGKEIHGYAVRHALDSDVAVGSALVDMYAKCGCLALSRAV 550
Query: 245 FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPACLKLAA 303
F++L R+V+ WN +I A+ G +A+ L ++ ++ KPN VT ++ L AC
Sbjct: 551 FDRLPRRNVITWNVLIMAYGMHGLGDEAIALFDRMVASDEAKPNEVTFIAALAACSHSGM 610
Query: 304 LPQGL------------GTGSFVWNALIDMYGRCGAIQKSRKIFVLM-PHKNLVS-WN 347
+ +GL + +D+ GR G + ++ +I M P + VS W+
Sbjct: 611 VDRGLEMFRSMKRNHGVEPTPDLHACAVDILGRAGRLDEAYRIISSMEPGEQQVSAWS 668
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 125/256 (48%), Gaps = 35/256 (13%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V+N+L+ YA+C L + F + +D V++N+++A L FR + L +M+
Sbjct: 96 VSNALLTAYARCGDLTAALALFDAMPSRDAVTFNSLIAALCL--FRRWLPALDALRDMLL 153
Query: 192 TDMQPNTISLSGVLAACAQV-KGVKLGKAIHGYVLRHH-------------IHLSTACGF 237
+ +L VL AC+ + + ++LG+ H + L++ + + G
Sbjct: 154 EGHPLTSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGL 213
Query: 238 VICSCSVFNQLSTRDV-----VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
V + ++F + DV V WN+++S V+SG+ +A+++L D++ V+P+ VT
Sbjct: 214 VDDAQTLFGSVGATDVPGGGVVTWNTMVSLLVQSGRCGEAIEVLYDMVARGVRPDGVTFA 273
Query: 293 SVLPACLKLAALPQG------------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP- 339
S LPAC +L L G L SFV +AL+DMY + +R +F ++P
Sbjct: 274 SALPACSQLEMLSLGREMHAYVLKDADLAANSFVASALVDMYASHERVGAARLVFDMVPA 333
Query: 340 -HKNLVSWNVMISVYG 354
+ L WN MI Y
Sbjct: 334 GERQLGLWNAMICGYA 349
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 32/188 (17%)
Query: 197 NTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI----------HLSTA---CGFVICSCS 243
+ +L + A ++ + ++IHG LRH + L TA CG + + +
Sbjct: 56 DRFALPPAAKSAAALRSLTAVRSIHGAALRHDLLDGPTPAVSNALLTAYARCGDLTAALA 115
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA- 302
+F+ + +RD V +NS+I+A + + ALD LRD+++ + T+VSVL AC LA
Sbjct: 116 LFDAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLTSFTLVSVLLACSHLAE 175
Query: 303 -----------ALPQGL--GTGSFVWNALIDMYGRCGAIQKSRKIF-----VLMPHKNLV 344
AL G G F +NAL+ MY R G + ++ +F +P +V
Sbjct: 176 DLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQTLFGSVGATDVPGGGVV 235
Query: 345 SWNVMISV 352
+WN M+S+
Sbjct: 236 TWNTMVSL 243
>gi|147805932|emb|CAN74403.1| hypothetical protein VITISV_043633 [Vitis vinifera]
Length = 841
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/360 (28%), Positives = 161/360 (44%), Gaps = 83/360 (23%)
Query: 25 QLLEVFCN-----WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK 79
QL E N W SM+ Y G +EE ++LF M +GV+ D + C EL
Sbjct: 318 QLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELA 377
Query: 80 DYRV-GKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLID 138
+ GK ++ ++I K G M D + N+L+
Sbjct: 378 SGLLKGKSLHAHVI-------------------KSG-----------MRIDASLGNALLS 407
Query: 139 FYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT 198
Y + ++ F ++K D++SWN M+ A R + L + M +++++PN+
Sbjct: 408 MYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMR--ESEIKPNS 465
Query: 199 ISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH----LSTA-------CGFVICSCSVFNQ 247
++ +LAAC V + G++IHGYV++H I L TA CG + +F
Sbjct: 466 YTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGDEATARDLFEG 525
Query: 248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
RD++ WN++I +PN+VTI++VL + LA LPQG
Sbjct: 526 CPDRDLISWNAMI---------------------XKAEPNSVTIINVLSSFTHLATLPQG 564
Query: 308 -------------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
LG + NA I MY RCG++Q + IF +P +N++SWN MI+ YG
Sbjct: 565 QSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGYG 624
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 167/345 (48%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ L + I++ + M GV P++ P V KAC+ GK ++
Sbjct: 27 HWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSIHR-- 84
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+G L+D D V +++DFY KC +++ + C
Sbjct: 85 ---SIQGT-----DLMD--------------------DVRVGTAVVDFYCKCGFVEDARC 116
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +D+V WNAM+ GY G EE L+ EM + +++PN+ ++ +L AC
Sbjct: 117 VFDAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMG--RENLRPNSRTMVALLLACEGA 174
Query: 212 KGVKLGKAIHGYVLRHHI-----HLSTA-CGFVI-----CSCSVFNQLSTRDVVVWNSII 260
++LG+ +HGY LR+ + H++TA GF + +F+ + R++V WN++I
Sbjct: 175 SELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRFDMRVLPLLFDLMVVRNIVSWNAMI 234
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-------- 312
S + G AL+L ++V VK + VT++ + AC +L +L G
Sbjct: 235 SGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFV 294
Query: 313 ---FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
++ NAL++MY G+++ S ++F +P+++ WN MIS Y
Sbjct: 295 EDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYA 339
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 82/395 (20%), Positives = 156/395 (39%), Gaps = 100/395 (25%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G +HAH+I G+ + A LG+ LL ++ +W +M+
Sbjct: 383 GKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALAR 442
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+ LF M + ++P+ + + AC ++ G+ ++ Y++ E N +
Sbjct: 443 NTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPL 502
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+ L D+++ CG LFE +DL+
Sbjct: 503 RTALADMYMNCGDEATARDLFE------------------------------GCPDRDLI 532
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SWNAM+ +PN++++ VL++ + + G+++H
Sbjct: 533 SWNAMI-----------------------XKAEPNSVTIINVLSSFTHLATLPQGQSLHA 569
Query: 223 YVLRH-------------HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
YV R I + CG + + ++F L R+++ WN++I+ + +G+
Sbjct: 570 YVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGYGMNGRG 629
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-----------TGSFV-WNA 317
DA+ ++ +PN VT VSVL AC + GL T V ++
Sbjct: 630 SDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQLFHSMVQDFNVTPELVHYSC 689
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMIS 351
++D+ R G I ++R+ MP + S W ++S
Sbjct: 690 IVDLLARGGCIDEAREFIDSMPIEPDASVWRALLS 724
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 115/223 (51%), Gaps = 26/223 (11%)
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG 213
+KI+ KD WN+++ A + + + +ME + + PN +L VL ACA
Sbjct: 18 TKIQIKDPKHWNSVIKHQANLKNDQAILSAYTQMESL--GVLPNNTTLPLVLKACAAQNA 75
Query: 214 VKLGKAIH----GYVLRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISA 262
V+ GK+IH G L + + TA CGFV + VF+ +S RDVV+WN+++
Sbjct: 76 VERGKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYG 135
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF--------- 313
+V G +A+ L+R++ N++PN+ T+V++L AC + L G G +
Sbjct: 136 YVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDS 195
Query: 314 ---VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V ALI Y R ++ +F LM +N+VSWN MIS Y
Sbjct: 196 NPHVATALIGFYLRFD-MRVLPLLFDLMVVRNIVSWNAMISGY 237
>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
Length = 886
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 112/432 (25%), Positives = 181/432 (41%), Gaps = 108/432 (25%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCN----WTSMMGMYNVLGYYEEIVNLFYLMI 57
LG V A + CG A S L V + W ++ + G + + + M+
Sbjct: 84 SLGTGVVASYLACGATSDAL--SVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRML 141
Query: 58 DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRME 117
G +PDHF P KAC EL YR G + + FE N V L+ ++ + G +E
Sbjct: 142 RAGTKPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLE 201
Query: 118 ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFR 177
S +F+E+ + + D++SWN+++A + G
Sbjct: 202 DASLVFDEITRKGI---------------------------DDVISWNSIVAAHVKGSNP 234
Query: 178 EEVTNLLDEMEMI----QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----- 228
+L EM I T+ + + IS+ +L ACA +K + K IH Y +R+
Sbjct: 235 RTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADA 294
Query: 229 ------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV------------- 269
I CG + + +VFN + +DVV WN++++ + +SG+
Sbjct: 295 FVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKE 354
Query: 270 ----------------------VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
+ALD + +I+ +PN+VTI+S+L AC L AL QG
Sbjct: 355 NIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQG 414
Query: 308 LGTGSF-----------------------VWNALIDMYGRCGAIQKSRKIFVLMP--HKN 342
+ T ++ V NALIDMY +C + + +R IF +P +N
Sbjct: 415 METHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERN 474
Query: 343 LVSWNVMISVYG 354
+V+W VMI Y
Sbjct: 475 VVTWTVMIGGYA 486
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 158/338 (46%), Gaps = 47/338 (13%)
Query: 62 RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSG 121
R D + AC+ LK K+++ Y I +A V L+D + KCG M+
Sbjct: 256 RSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVN 315
Query: 122 LFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK----DLVSWNAMLAGYALGGF 176
+F M+ +D + N+++ Y + + F ++++ D+++W+A++AGYA G+
Sbjct: 316 VFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGY 375
Query: 177 REEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR---------- 226
+E + +MI +PN++++ +L+ACA + + G H Y L+
Sbjct: 376 GQEALDTF--QQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDF 433
Query: 227 -----------HH--IHLSTACGFVICSCSVFNQLSTRD--VVVWNSIISAFVRSGQVVD 271
H+ I + + C + ++FN + R+ VV W +I + + G D
Sbjct: 434 GGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSND 493
Query: 272 ALDLLRDVIVAN--VKPNTVTIVSVLPACLKLAALPQGLGTGS-------------FVWN 316
AL L ++I V PN TI +L AC L++L G + FV N
Sbjct: 494 ALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVAN 553
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
LIDMY +CG + +R +F MP +N VSW M+S YG
Sbjct: 554 CLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYG 591
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 152/335 (45%), Gaps = 45/335 (13%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W++++ Y GY +E ++ F MI G P+ + AC+ L G + + Y
Sbjct: 362 TWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYS 421
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ K+ LL L G L +V+N+LID Y+KCR K +
Sbjct: 422 L----------KKCLLSLDNDFGGDGDGEDL--------VVHNALIDMYSKCRSFKAART 463
Query: 152 KFSKI--KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F+ I +++++V+W M+ GYA G + L EM + PN ++S +L ACA
Sbjct: 464 IFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACA 523
Query: 210 QVKGVKLGKAIHGYVLRHH-------------IHLSTACGFVICSCSVFNQLSTRDVVVW 256
+ +++GK IH YV RHH I + + CG V + +VF+ + R+ V W
Sbjct: 524 HLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSW 583
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG------- 309
S++S + G+ +ALD+ + A P+ ++ + +L AC + QGL
Sbjct: 584 TSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRS 643
Query: 310 -----TGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+ + +ID+ R G + K+ K MP
Sbjct: 644 DYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMP 678
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSMM Y + G +E +++F M G PD + ACS G D +D M
Sbjct: 582 SWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIM 641
Query: 92 IS-----IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQD 129
S + ACV +DL + GR++ +EM +
Sbjct: 642 RSDYGVIASAQHYACV----IDLLARSGRLDKAWKTIQEMPME 680
>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
Length = 906
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 106/437 (24%), Positives = 197/437 (45%), Gaps = 89/437 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ +G QVH ++V G E F+ + L+ ++ +W ++
Sbjct: 173 LRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSC 232
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y + E V LFY M+ G++P+ F + AC+ L+D GK ++ Y+I + ++ +
Sbjct: 233 YVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWD 292
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFE----------------------------------- 124
L+D++ K G + +FE
Sbjct: 293 PFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKR 352
Query: 125 ---------EMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGG 175
+M+ D V+ L+D Y+KC L+ + F+ + +KDL++WNA+++GY+
Sbjct: 353 QLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYS--Q 410
Query: 176 FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG-----------YV 224
+ E++ L +EM + + N +LS +L + A ++ V + + +HG YV
Sbjct: 411 YWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYV 470
Query: 225 LRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV 284
+ I C V + +F + + D+V + S+I+A+ + GQ +AL L ++ +
Sbjct: 471 VNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMEL 530
Query: 285 KPNTVTIVSVLPACLKLAALPQG-------LGTGS----FVWNALIDMYGRCGAIQKSRK 333
KP+ S+L AC L+A QG L G F N+L++MY +CG+I + +
Sbjct: 531 KPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGR 590
Query: 334 IFVLMPHKNLVSWNVMI 350
F + + +VSW+ MI
Sbjct: 591 AFSELTERGIVSWSAMI 607
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/382 (24%), Positives = 168/382 (43%), Gaps = 80/382 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G+Q+HAH+ G+ + + L+ ++ +W++++ Y
Sbjct: 75 GLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQ 134
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G + F+ M GV+ + F V KACS +KD R+GK V+ ++ FEG+ V
Sbjct: 135 NGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFV 194
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L+ ++ KC +FL + L F +I ++++V
Sbjct: 195 ANTLVVMYAKC--------------DEFLDSKRL----------------FDEIPERNVV 224
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SWNA+ + Y F E L EM+ + ++PN SLS ++ AC ++ GK IHG
Sbjct: 225 SWNALFSCYVQXDFCGEAVGLF--YEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHG 282
Query: 223 YVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
Y+++ + + G + + SVF ++ D+V WN++I+ V
Sbjct: 283 YLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQ 342
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKS 331
AL+LL + L + + + + FV L+DMY +C ++ +
Sbjct: 343 ALELL----------------GQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDA 386
Query: 332 RKIFVLMPHKNLVSWNVMISVY 353
R F L+P K+L++WN +IS Y
Sbjct: 387 RMAFNLLPEKDLIAWNAIISGY 408
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 119/246 (48%), Gaps = 26/246 (10%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D V NSLID Y KC +++ + F + DLVS+ +M+ YA G EE L +E
Sbjct: 467 DIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLF--LE 524
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGF 237
M +++P+ S +L ACA + + GK +H ++L++ +++ CG
Sbjct: 525 MQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGS 584
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ + F++L+ R +V W+++I + G AL L ++ V PN +T+VSVL A
Sbjct: 585 IDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGA 644
Query: 298 C----------LKLAALPQGLGTGSFV--WNALIDMYGRCGAIQKSRKIFVLMPHK-NLV 344
C L ++ + G + +ID+ GR G I ++ ++ MP + N
Sbjct: 645 CNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANAS 704
Query: 345 SWNVMI 350
W ++
Sbjct: 705 VWGALL 710
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 21/96 (21%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
E G Q+H H++ G L F G+ L+ ++ +W++M+G
Sbjct: 551 EQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGL 610
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACS 76
G+ + + LF M+ +GV P+H V AC+
Sbjct: 611 AQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACN 646
>gi|359491917|ref|XP_003634341.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 767
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 164/346 (47%), Gaps = 26/346 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W SMM Y G E + +F M+ D PD F V KA L ++ ++ +
Sbjct: 93 SWNSMMSGYFHNGELEATIKVFVSMVRDCCCVPDPFSFSCVMKASGSLGYLKLALQLHGF 152
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLF-EEMDQDFLVNNSLIDFYAKCRYLKVS 149
F + CV+ +LD++IKCG M+ +F + NS+I Y+K +K +
Sbjct: 153 AEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKA 212
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F+K+ ++D VSWN M++ + GF E N +EM +PN+++ + VL+AC
Sbjct: 213 LELFAKMPERDTVSWNTMISILSQHGFGAETLNTF--LEMWNQGFRPNSMTYASVLSACT 270
Query: 210 QVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ ++ G +H ++R I + CG + + VF+ L+ + V W S
Sbjct: 271 SIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTEHNAVSWTS 330
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQG 307
+I ++G +AL L + V + T+ +VL CL + +G
Sbjct: 331 LIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTITRG 390
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L + V NAL+ MY +CG + K+ F LMP ++++SW MI+ +
Sbjct: 391 LDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAF 436
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/376 (24%), Positives = 163/376 (43%), Gaps = 85/376 (22%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ + + G+ E +N F M ++G RP+ V AC+ + D G ++ +
Sbjct: 226 SWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARI 285
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ ++ P LD++ CG LID YAKC L+ +
Sbjct: 286 VRME---------PCLDVYAGCG---------------------LIDMYAKCGRLESARQ 315
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + + + VSW +++ G A GF+EE L ++M + + + +L+ VL C
Sbjct: 316 VFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMR--EVPVASDQFTLATVLGVCLSQ 373
Query: 212 KGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSII 260
K + +G+ +H + + + S CG V + F + RD++ W ++I
Sbjct: 374 KDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMI 433
Query: 261 SAFVRSGQVVDALDLL-----RDVIVAN--------------------------VKPNTV 289
+AF ++G V A + R+VI N VK + +
Sbjct: 434 TAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWI 493
Query: 290 TIVSVLPACLKLAAL-----------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLM 338
T + + AC LA L G + V N+++ MY RCG I++++K+F +
Sbjct: 494 TFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSI 553
Query: 339 PHKNLVSWNVMISVYG 354
KNLVSWN M++ Y
Sbjct: 554 VMKNLVSWNAMMAGYA 569
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/334 (22%), Positives = 161/334 (48%), Gaps = 38/334 (11%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTS++G G+ EE + LF M + V D F V C KD +G+ ++ +
Sbjct: 327 SWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHT 386
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSH 150
I+ + + V L+ ++ KCG + + FE M +D + ++I +++ ++ +
Sbjct: 387 ITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQAGDVEKAR 446
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F K+ +++++SWN+MLA Y G+ EE L ++M++ ++ + I+ S ++ACA
Sbjct: 447 EYFDKMPERNVISWNSMLATYMQRGYWEE--GLKVYIQMLREGVKTDWITFSTSISACAD 504
Query: 211 V-----------KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ + KLG + + V + + + CG + + +F+ + +++V WN++
Sbjct: 505 LAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMKNLVSWNAM 564
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALI 319
++ + ++GQ +++ ++ P+ ++ VSVL
Sbjct: 565 MAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLS----------------------- 601
Query: 320 DMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
D+ GR G +++++ + MP K N W +++
Sbjct: 602 DLLGRAGQLEQAKNLINQMPFKPNAAIWGALLAA 635
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/332 (22%), Positives = 139/332 (41%), Gaps = 55/332 (16%)
Query: 73 KACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEE-MDQDFL 131
K C+ L+ + + ++ +I + + + ++ LL+++ CG + +F M +
Sbjct: 2 KECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVY 61
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
N++I +A ++ + F K+ ++D VSWN+M++GY G E + M +
Sbjct: 62 SWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKVFVSM-VRD 120
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-----------ACGFVIC 240
P+ S S V+ A + +KL +HG+ + + T CG +
Sbjct: 121 CCCVPDPFSFSCVMKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDF 180
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL-----RDVIVANV----------- 284
+ VF + + WNS+I + + G V AL+L RD + N
Sbjct: 181 AQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFG 240
Query: 285 ---------------KPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNAL 318
+PN++T SVL AC + L G + + L
Sbjct: 241 AETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGL 300
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
IDMY +CG ++ +R++F + N VSW +I
Sbjct: 301 IDMYAKCGRLESARQVFDGLTEHNAVSWTSLI 332
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 313 FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ WN +I + G ++++ K+F MP ++ VSWN M+S Y
Sbjct: 61 YSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGY 101
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 295 LPACLKLAA--LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+P KL A + GL + F+ N L++MY CG I + ++F + N+ SWN MIS
Sbjct: 10 IPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVYSWNTMISG 69
Query: 353 YG 354
+
Sbjct: 70 FA 71
>gi|297744641|emb|CBI37903.3| unnamed protein product [Vitis vinifera]
Length = 516
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/347 (27%), Positives = 171/347 (49%), Gaps = 28/347 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ + GY++E + + G++ + F V C +LK+ + + V+ +
Sbjct: 159 SWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQI 218
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSH 150
+ F N + +LD ++KCG M LF+EM +D L +++ YAK +K ++
Sbjct: 219 LVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSAN 278
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ +K+ VSW A+++GYA G + L +M + ++P+ + S L ACA
Sbjct: 279 ELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFH--VRPDQFTFSSCLCACAS 336
Query: 211 VKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTR-DVVVWNS 258
+ +K GK IH Y+LR + I + + CG + VF+ + + DVV+WN+
Sbjct: 337 IASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNT 396
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG--------- 309
IISA + G +A+ +L D++ + KP+ +T V +L AC + QGL
Sbjct: 397 IISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDY 456
Query: 310 ---TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
+ LID+ GR G ++ MP+K + WN ++ V
Sbjct: 457 GIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNALLGV 503
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 102/367 (27%), Positives = 176/367 (47%), Gaps = 70/367 (19%)
Query: 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP-- 105
E V+ + +G+R D + + C++ + R GK V+ + +K G +KRP
Sbjct: 42 EAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVH---LHLKLTG---LKRPGT 95
Query: 106 -----LLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKIKQK 159
L++++ KCG+ +F++M L + N+++ YAK +K + F K+ +K
Sbjct: 96 FLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEK 155
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSWN M+ +A G+ +E E Q +Q N S +GVL C ++K V L +
Sbjct: 156 DVVSWNTMVIAHAQCGYWDEALRFYSEFR--QLGIQCNGFSFAGVLTVCVKLKEVGLTRQ 213
Query: 220 IHGYVL----RHHIHLSTA-------CGFVICSCSVFNQLSTRDV--------------- 253
+HG +L ++ LS++ CG + + +F+++S RDV
Sbjct: 214 VHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGD 273
Query: 254 ----------------VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
V W ++IS + R+G AL+L +++ +V+P+ T S L A
Sbjct: 274 MKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCA 333
Query: 298 CLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVS 345
C +A+L G + V +ALIDMY +CG++ RK+F LM +K ++V
Sbjct: 334 CASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVL 393
Query: 346 WNVMISV 352
WN +IS
Sbjct: 394 WNTIISA 400
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 12/107 (11%)
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG---------- 309
I + ++ +A+ L ++ ++ ++ T+ S+L C AL +G
Sbjct: 31 IVKLCKKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGL 90
Query: 310 --TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G+F+ N LI+MY +CG ++RK+F M +NL SWN M+S Y
Sbjct: 91 KRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYA 137
>gi|38567725|emb|CAE76014.1| B1358B12.23 [Oryza sativa Japonica Group]
Length = 918
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/346 (29%), Positives = 168/346 (48%), Gaps = 53/346 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTS++G Y G+ E+ V LF M + G++PD V + R GK +
Sbjct: 283 SWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFH--- 339
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
A V+R D L+ N+LI YAKC+ + ++
Sbjct: 340 -------AAIVRRNFGD--------------------SVLIGNALISMYAKCKQVDIAAT 372
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNTISLSGVLAACAQ 210
F + Q+D SW++M+ Y G + L EM+ D + +T SL ++++C++
Sbjct: 373 VFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSR 432
Query: 211 VKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ ++LG++ H Y ++H I + CG + +F + T+DVV W+++
Sbjct: 433 LGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSAL 492
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN--- 316
IS++ G DAL L ++ VKPN+ T+VSV+ +C LAAL G S V +
Sbjct: 493 ISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGL 552
Query: 317 --------ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
AL+DMY +CG + +RK+F M +++V+WNVMIS YG
Sbjct: 553 ECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYG 598
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 125/247 (50%), Gaps = 27/247 (10%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V +SL Y KC + + F ++ +KDLVSW +++ Y G E+ L ME +
Sbjct: 252 VVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGME--E 309
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVIC 240
+ +QP+ + +S +LA V+ GK H ++R + I + C V
Sbjct: 310 SGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDI 369
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN---VKPNTVTIVSVLPA 297
+ +VF L RD W+S++ A+ ++G + L+L R++ + + +T +++S++ +
Sbjct: 370 AATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISS 429
Query: 298 CLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
C +L L G G S V NALI MYGRCG +RKIF ++ K++V+W
Sbjct: 430 CSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTW 489
Query: 347 NVMISVY 353
+ +IS Y
Sbjct: 490 SALISSY 496
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 119/230 (51%), Gaps = 24/230 (10%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V N+LI Y +C V+ F +K KD+V+W+A+++ Y+ G ++ L D+M +
Sbjct: 457 VANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQM--LT 514
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVIC 240
++PN+ +L V+++CA + ++ G+ IH +V L + + TA CG +
Sbjct: 515 EGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGI 574
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ +F+ + RDVV WN +IS + G+ + AL L + NVKPN++T +++L AC
Sbjct: 575 ARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCH 634
Query: 301 LAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+ +G L + ++D+ G+ G +Q++ + MP
Sbjct: 635 AGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMP 684
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/345 (23%), Positives = 146/345 (42%), Gaps = 51/345 (14%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ + + ++ M G RP F P V A +EL VG V+ Y
Sbjct: 75 WNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAY-- 132
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
S++F GL E D V +SL+ YA+C ++ +
Sbjct: 133 SVRF------------------------GLLEG-DGSVAVASSLVYMYARCGSVRDAVRL 167
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD--MQPNTISLSGVLAACAQ 210
F ++ ++D+V+W A+++G G E + L M D +PN+ ++ L AC
Sbjct: 168 FDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGV 227
Query: 211 VKGVKLGKAIHGY-----------VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ + +G +HG+ V+ + T C + +F +L +D+V W S+
Sbjct: 228 LGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSL 287
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA-----------CLKLAALPQGL 308
I A+ R+G A++L + + ++P+ V I +L A + +
Sbjct: 288 IGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNF 347
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G + NALI MY +C + + +F ++ ++ SW+ M+ Y
Sbjct: 348 GDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAY 392
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 31/223 (13%)
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D WN++L + + L M + +P+ + V +A A++ + +G A
Sbjct: 71 DAFLWNSLLRSRHRAS--DFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAA 128
Query: 220 IHGYVLRHH--------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVR 265
+H Y +R +++ CG V + +F+++ RDVV W ++IS V
Sbjct: 129 VHAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVC 188
Query: 266 SGQVVDALDLL----RDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGT 310
+GQ + L L R +PN+ T+ S L AC L L G+G
Sbjct: 189 NGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGH 248
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V ++L MY +C + + +R +F +P K+LVSW +I Y
Sbjct: 249 CPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAY 291
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 91/189 (48%), Gaps = 32/189 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W++++ Y+ LG+ ++ + L+ M+ +GV+P+ V +C+ L G+ ++ ++
Sbjct: 488 TWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHV 547
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ E + + L+D+++KCG++ I +F+ M
Sbjct: 548 KDVGLECDLSICTALVDMYMKCGQLGIARKMFDSM------------------------- 582
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
++D+V+WN M++GY + G + L ME + +++PN+++ +L+AC
Sbjct: 583 -----LERDVVTWNVMISGYGMHGEAIQALKLFSMME--RGNVKPNSLTFLAILSACCHA 635
Query: 212 KGVKLGKAI 220
V G+ +
Sbjct: 636 GLVDKGREL 644
>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Vitis vinifera]
Length = 654
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 105/397 (26%), Positives = 186/397 (46%), Gaps = 53/397 (13%)
Query: 5 IQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVL--------------------- 43
+Q+H H I+ G +L + L++++ M Y V
Sbjct: 147 MQIHCHAIITGSFYYGYLQNTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAKK 206
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS---IKFEGNA 100
G+ E + + M+ G++PD F + C L D ++GK V+ ++ IK N
Sbjct: 207 GHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIK-SSNL 265
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ LLD+++KC + I +F + +D + N++I YAK L+++H F + +
Sbjct: 266 ILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCR 325
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
DLVSWN+++AGYA G V L + M+ ++ P+ +++ +++A A++ + G+
Sbjct: 326 DLVSWNSIIAGYAQKGDCLMVQRLFE--NMVAENIWPDFVTIINLVSAAAEIGALHHGRW 383
Query: 220 IHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IHG+V+R + + CG + +C VF +++ +DV VW ++I+ F G
Sbjct: 384 IHGWVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREVTEKDVTVWTTMITGFAFHGY 443
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL------------GTGSFVWN 316
AL L + + V PN VT V+VL AC + QGL G +
Sbjct: 444 GSKALQLFYE-MQEYVMPNQVTFVAVLTACSHSGFVSQGLRIFNSMKERYGIEPGVEHYG 502
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMISV 352
L+D+ GR G + + + +MP K S W ++S
Sbjct: 503 CLVDLLGRSGRFSEVKDVIEMMPMKPSRSIWGAVLSA 539
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 17/126 (13%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
VF Q++ D V +N +I + + G ++AL L +++ +KP+ T++ +L C +L
Sbjct: 184 VFQQMAAPDAVSFNIMIFGYAKKGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLG- 242
Query: 304 LPQGLGTGSFVW---------------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
LG W NAL+DMY +C ++ ++ IF ++ K+ +SWN
Sbjct: 243 -DAQLGKSVHAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNT 301
Query: 349 MISVYG 354
MI+ Y
Sbjct: 302 MIAGYA 307
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/272 (20%), Positives = 103/272 (37%), Gaps = 65/272 (23%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ Y G + LF M+ + + PD + A +E+ G+ ++ ++
Sbjct: 329 SWNSIIAGYAQKGDCLMVQRLFENMVAENIWPDFVTIINLVSAAAEIGALHHGRWIHGWV 388
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + +M D + ++ ID Y KC +K +
Sbjct: 389 VRM------------------------------QMKIDAFLGSAFIDMYWKCGSIKRACM 418
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +KD+ W M+ G+A G+ + L EM Q + PN ++ VL AC+
Sbjct: 419 VFREVTEKDVTVWTTMITGFAFHGYGSKALQLFYEM---QEYVMPNQVTFVAVLTACSH- 474
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTR-----DVVVWNSIISAFVRS 266
GFV +FN + R V + ++ RS
Sbjct: 475 -----------------------SGFVSQGLRIFNSMKERYGIEPGVEHYGCLVDLLGRS 511
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
G+ + D++ + +KP+ +VL AC
Sbjct: 512 GRFSEVKDVIE---MMPMKPSRSIWGAVLSAC 540
>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
Length = 805
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/342 (28%), Positives = 164/342 (47%), Gaps = 54/342 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W ++G Y G+++E + L++ ++ G+RPD + P V ++C+ D G++V+ ++
Sbjct: 102 SWNVLVGGYTKAGFFDEALCLYHRILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHV 161
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F D D V N+LI Y KC + +
Sbjct: 162 VRFDF------------------------------DMDVDVVNALITMYVKCGDVVSARM 191
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K+ +D +SWNAM++GY E L M + D P+ ++++ V++AC +
Sbjct: 192 LFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSID--PDLMTMTSVISACELL 249
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+LG +H YV+R I + + G + SVF+ + RDVV W +II
Sbjct: 250 GDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTII 309
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-------TGSF 313
S V + AL+ + + + P+ VTI SVL AC L L G+ TG
Sbjct: 310 SGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHI 369
Query: 314 VW----NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
++ N+LIDMY +C I+K+ +IF +P K+++SW +I+
Sbjct: 370 LYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVIN 411
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/350 (25%), Positives = 164/350 (46%), Gaps = 66/350 (18%)
Query: 32 NWTSMMGMYNVLGYYE-----EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKD 86
+W +M+ GY+E E + LF+ M + + PD V AC L D R+G
Sbjct: 203 SWNAMIS-----GYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQ 257
Query: 87 VYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL 146
++ Y++ ++GN V NSLI Y +
Sbjct: 258 LHSYVVRTAYDGNISVY------------------------------NSLIQMYLSVGHW 287
Query: 147 KVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
K + FS ++ +D+VSW +++G ++ ME+ T P+ ++++ VL+
Sbjct: 288 KEAESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEI--TGTMPDEVTIASVLS 345
Query: 207 ACAQVKGVKLGKAIH------GYVL-----RHHIHLSTACGFVICSCSVFNQLSTRDVVV 255
ACA + + +G +H G++L I + + C + + +F+Q+ +DV+
Sbjct: 346 ACASLGQLDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVIS 405
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------AL 304
W S+I+ + + +AL R +I+ + KPN+VT++S L AC ++ AL
Sbjct: 406 WTSVINGLRINNRCFEALIFFRKMILKS-KPNSVTLISALSACARVGALMCGKEIHAHAL 464
Query: 305 PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G+G F+ NA++D+Y RCG ++ + F L K++ +WN++++ Y
Sbjct: 465 KAGMGFDGFLPNAILDLYVRCGRMRTALNQFNL-NEKDVGAWNILLTGYA 513
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 111/221 (50%), Gaps = 24/221 (10%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ ++DL SWN ++ GY GF +E L + + ++P+ + VL +CA
Sbjct: 92 FGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRI--LWAGIRPDVYTFPSVLRSCAGAM 149
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ G+ +H +V+R I + CG V+ + +F+++ TRD + WN++IS
Sbjct: 150 DLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMIS 209
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-------- 313
+ + + ++ L+L + ++ P+ +T+ SV+ AC L G S+
Sbjct: 210 GYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDG 269
Query: 314 ---VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
V+N+LI MY G +++ +F M +++VSW +IS
Sbjct: 270 NISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIIS 310
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 19/162 (11%)
Query: 203 GVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISA 262
VL++ + V+LG A+ +R G V + +VF ++ RD+ WN ++
Sbjct: 58 AVLSSLVTLLSVRLGNALLSMFVRF--------GDVGNAWNVFGRMGERDLFSWNVLVGG 109
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW------- 315
+ ++G +AL L ++ A ++P+ T SVL +C L +G + V
Sbjct: 110 YTKAGFFDEALCLYHRILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMD 169
Query: 316 ----NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
NALI MY +CG + +R +F MP ++ +SWN MIS Y
Sbjct: 170 VDVVNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGY 211
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 75/186 (40%), Gaps = 34/186 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTS++ + E + F MI K +P+ AC+ + GK+++ +
Sbjct: 405 SWTSVINGLRINNRCFEALIFFRKMILKS-KPNSVTLISALSACARVGALMCGKEIHAHA 463
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + + +LDL+++CGRM F
Sbjct: 464 LKAGMGFDGFLPNAILDLYVRCGRMRTALNQF---------------------------- 495
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+ +KD+ +WN +L GYA G V L M+++++ P+ ++ +L AC++
Sbjct: 496 ---NLNEKDVGAWNILLTGYAQKGKGAMVMELFK--RMVESEINPDDVTFISLLCACSRS 550
Query: 212 KGVKLG 217
V G
Sbjct: 551 GMVTEG 556
>gi|347954482|gb|AEP33741.1| chlororespiratory reduction 21, partial [Thlaspi arvense]
Length = 732
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 174/364 (47%), Gaps = 57/364 (15%)
Query: 15 GVELCAFLGSQLL--EVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVY 72
+E+ L S+L VF +W +++G+ +G E + F M++ G+ PD+FV P V
Sbjct: 102 ALEIAELLFSKLRVRNVF-SWAAIIGVKCRIGLVEGALMGFVEMLENGIFPDNFVVPNVC 160
Query: 73 KACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLV 132
KAC L+ R G+ V+ Y++ F V L D++ KCG ++ +F+E
Sbjct: 161 KACGALQWSRFGRGVHGYVVKAGFHDCVFVASSLADMYGKCGVLDEARKVFDE------- 213
Query: 133 NNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQT 192
I ++++V+WNA++ GY G EE L +M +
Sbjct: 214 -----------------------IPERNVVAWNALMVGYVQNGMNEEAIRLFSDMR--KE 248
Query: 193 DMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-----------ACGFVICS 241
++P +++S L+A A + G++ GK H + + + L G + C+
Sbjct: 249 GVEPTRVTVSTCLSASANMGGIEEGKQSHAIAVVNGLELDNILGTSILNFYCKVGLIECA 308
Query: 242 CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
+F+++ +DVV WN +IS +V+ G V DA+ + + + + N+K + VT+ +++ A +
Sbjct: 309 EMIFDRMVEKDVVTWNLLISGYVQQGLVEDAIRMCQSMRLENLKFDCVTLSTLMSAAART 368
Query: 302 AALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
G S+ + + +DMY +CG+I ++K+F K+L+ WN ++
Sbjct: 369 QDSKLGKEVQSYCIRHSLESDIVLASTAVDMYAKCGSIVDAKKVFDSTVQKDLILWNTLL 428
Query: 351 SVYG 354
Y
Sbjct: 429 GAYA 432
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 96/426 (22%), Positives = 180/426 (42%), Gaps = 87/426 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q HA +V G+EL LG+ +L +C W ++
Sbjct: 270 IEEGKQSHAIAVVNGLELDNILGTSILNFYCKVGLIECAEMIFDRMVEKDVVTWNLLISG 329
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G E+ + + M + ++ D + A + +D ++GK+V Y I E +
Sbjct: 330 YVQQGLVEDAIRMCQSMRLENLKFDCVTLSTLMSAAARTQDSKLGKEVQSYCIRHSLESD 389
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEE-MDQDFLVNNSLIDFYAKC--------------- 143
+ +D++ KCG + +F+ + +D ++ N+L+ YA+
Sbjct: 390 IVLASTAVDMYAKCGSIVDAKKVFDSTVQKDLILWNTLLGAYAESGLSGEALRLFYEMQL 449
Query: 144 ------------------RYLKVSHCK--FSKIKQK----DLVSWNAMLAGYALGGFREE 179
R +V+ K F +++ +LVSW M+ G G EE
Sbjct: 450 ESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGIIPNLVSWTTMMNGLVQNGCSEE 509
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST------ 233
L +M+ ++ ++PN S++ L+ACA + + G++IHGY++R+ H S+
Sbjct: 510 AILFLRKMQ--ESGLRPNVFSITVALSACANLASLHYGRSIHGYIIRNQRHCSSVSIETS 567
Query: 234 ------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
CG + + VF ++ ++N++IS F G V +A+ L R + +KP+
Sbjct: 568 LVDMYAKCGDINKAERVFRSKLYSELPLYNAMISGFAVYGNVKEAIGLYRSLEDMGIKPD 627
Query: 288 TVTIVSVLPACLKLAALPQ------------GLGTGSFVWNALIDMYGRCGAIQKSRKIF 335
++T S+L AC + Q GL + ++D+ G K+ ++
Sbjct: 628 SITFTSLLSACNHAGDINQAFEIFTDMVSKHGLKPCLEHYGLMVDLLASAGETDKALRLM 687
Query: 336 VLMPHK 341
MP+K
Sbjct: 688 EEMPYK 693
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/385 (22%), Positives = 164/385 (42%), Gaps = 92/385 (23%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYN 41
G VH +++ G C F+ S L +++ W ++M Y
Sbjct: 171 FGRGVHGYVVKAGFHDCVFVASSLADMYGKCGVLDEARKVFDEIPERNVVAWNALMVGYV 230
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G EE + LF M +GV P A + + GK +
Sbjct: 231 QNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASANMGGIEEGKQSH------------- 277
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ + +GL + D ++ S+++FY K ++ + F ++ +KD+
Sbjct: 278 -------------AIAVVNGL----ELDNILGTSILNFYCKVGLIECAEMIFDRMVEKDV 320
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
V+WN +++GY G E+ + M + +++ + ++LS +++A A+ + KLGK +
Sbjct: 321 VTWNLLISGYVQQGLVEDAIRMCQSMRL--ENLKFDCVTLSTLMSAAARTQDSKLGKEVQ 378
Query: 222 GYVLRHHIH-----LSTA------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y +RH + STA CG ++ + VF+ +D+++WN+++ A+ SG
Sbjct: 379 SYCIRHSLESDIVLASTAVDMYAKCGSIVDAKKVFDSTVQKDLILWNTLLGAYAESGLSG 438
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQK 330
+AL L ++ + +V PN +T WN +I R G + +
Sbjct: 439 EALRLFYEMQLESVPPNVIT------------------------WNLIILSLLRNGQVNE 474
Query: 331 SRKIFVLMPHK----NLVSWNVMIS 351
++++F+ M NLVSW M++
Sbjct: 475 AKEMFLQMQSSGIIPNLVSWTTMMN 499
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 146/305 (47%), Gaps = 44/305 (14%)
Query: 77 ELKDYRVGKDVYDYMIS-IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNS 135
+ + R+G ++Y ++ ++ N C + + +K G DF N
Sbjct: 42 DFRKIRIGPEIYGEILQGCVYKRNLCTGKQIHARILKKG--------------DFYARNE 87
Query: 136 LID-----FYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
I+ FYAKC L+++ FSK++ +++ SW A++ G E L+ +EM+
Sbjct: 88 YIETKLVIFYAKCDALEIAELLFSKLRVRNVFSWAAIIGVKCRIGLVEGA--LMGFVEML 145
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVI 239
+ + P+ + V AC ++ + G+ +HGYV++ H + CG +
Sbjct: 146 ENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKAGFHDCVFVASSLADMYGKCGVLD 205
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ VF+++ R+VV WN+++ +V++G +A+ L D+ V+P VT+ + L A
Sbjct: 206 EARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASA 265
Query: 300 KLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
+ + + GL + + ++++ Y + G I+ + IF M K++V+WN+
Sbjct: 266 NMGGIEEGKQSHAIAVVNGLELDNILGTSILNFYCKVGLIECAEMIFDRMVEKDVVTWNL 325
Query: 349 MISVY 353
+IS Y
Sbjct: 326 LISGY 330
>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
Length = 897
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 111/426 (26%), Positives = 177/426 (41%), Gaps = 108/426 (25%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN-----WTSMMGMYNVLGYYEEIVNLFYLMI 57
LG V A + CG A L +LE W ++ + G + +N+ M+
Sbjct: 98 LGTGVVASYLACGATDYALL---VLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRML 154
Query: 58 DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRME 117
G RPDHF P V KAC EL YR G + + FE N + L+ ++ +CG +E
Sbjct: 155 RAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLE 214
Query: 118 ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFR 177
S +F+E+ Q + D++SWN++++ +
Sbjct: 215 EASMIFDEITQRGI---------------------------DDVISWNSIVSAHVKSSNA 247
Query: 178 EEVTNLLDEMEMI----QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----- 228
+L +M +I T+ + + IS+ +L AC +K V K +HG +R+
Sbjct: 248 WTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDV 307
Query: 229 ------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV------------ 270
I CG + + VFN + +DVV WN++++ + +SG
Sbjct: 308 FVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKE 367
Query: 271 -----------------------DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
+AL+L R +I + PN VTI+SVL AC L A QG
Sbjct: 368 NIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQG 427
Query: 308 LGTGSF---------------------VWNALIDMYGRCGAIQKSRKIFVLMP--HKNLV 344
++ V+NALIDMY +C + + +R IF +P +N+V
Sbjct: 428 TEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVV 487
Query: 345 SWNVMI 350
+W VMI
Sbjct: 488 TWTVMI 493
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 97/349 (27%), Positives = 158/349 (45%), Gaps = 48/349 (13%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WT+++ Y+ G E +NLF MI G P+ V AC+ L + G +++ Y
Sbjct: 375 TWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYS 434
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ K LL L F D+D +V N+LID Y+KCR K +
Sbjct: 435 L----------KNCLLTL----------DNDFGGEDEDLMVYNALIDMYSKCRSFKAARS 474
Query: 152 KFSKI--KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F I +++++V+W M+ G+A G + L EM + PN ++S +L ACA
Sbjct: 475 IFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACA 534
Query: 210 QVKGVKLGKAIHGYVLRHHIHLSTA-------------CGFVICSCSVFNQLSTRDVVVW 256
+ +++GK IH YVLRHH + S+A CG V + VF+ +S + + W
Sbjct: 535 HLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISW 594
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG------- 309
S+++ + G+ +ALD+ + A P+ +T + VL AC + QGL
Sbjct: 595 TSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSA 654
Query: 310 -----TGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ + ID+ R G + K+ + MP V W ++S
Sbjct: 655 DYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSA 703
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 151/336 (44%), Gaps = 45/336 (13%)
Query: 62 RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSG 121
R D + AC LK K+V+ I + V L+D + KCG ME
Sbjct: 269 RSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVK 328
Query: 122 LFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK----DLVSWNAMLAGYALGGF 176
+F M+ +D + N+++ Y++ + + F ++++ D+V+W A++AGY+ G
Sbjct: 329 VFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGC 388
Query: 177 REEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH--------- 227
E NL +MI + PN +++ VL+ACA + G IH Y L++
Sbjct: 389 SHEALNLF--RQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDF 446
Query: 228 ------------HIHLSTACGFVICSCSVFNQ--LSTRDVVVWNSIISAFVRSGQVVDAL 273
I + + C + S+F+ L R+VV W +I + G DAL
Sbjct: 447 GGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDAL 506
Query: 274 DLLRDVIVA--NVKPNTVTIVSVLPACLKLAALPQGL-------------GTGSFVWNAL 318
L ++I V PN TI +L AC LAA+ G + FV N L
Sbjct: 507 KLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCL 566
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
IDMY +CG + +R +F M K+ +SW M++ YG
Sbjct: 567 IDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYG 602
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 115/232 (49%), Gaps = 33/232 (14%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
++ V WN ++ + G + N+ M++ +P+ +L VL AC ++
Sbjct: 119 LERVTPSPAVWWNLLIREHIKQGRLDSAINV--SCRMLRAGTRPDHFTLPHVLKACGELP 176
Query: 213 GVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTR---DVVVWNS 258
+ G A HG ++ + + + CG + + +F++++ R DV+ WNS
Sbjct: 177 SYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNS 236
Query: 259 IISAFVRSGQVVDALDLLRDVIV------ANVKPNTVTIVSVLPACLKLAALPQ------ 306
I+SA V+S ALDL + + N + + ++IV++LPAC L A+PQ
Sbjct: 237 IVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHG 296
Query: 307 -----GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G FV NALID Y +CG ++ + K+F +M K++VSWN M++ Y
Sbjct: 297 NAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGY 348
>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 689
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/403 (24%), Positives = 201/403 (49%), Gaps = 51/403 (12%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDK- 59
++LG Q HA +++ G++ AFL ++++ ++ + + V + +L Y I +
Sbjct: 93 IKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRA 152
Query: 60 -----------------------GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKF 96
G+ D+F P V K+C++L +G+ V+ + +
Sbjct: 153 YTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGL 212
Query: 97 EGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSK 155
EG+ V L+D+++KCG + LF++M +D N+LI Y K + V+ F +
Sbjct: 213 EGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFER 272
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
++ +++VSW AM++GY GF E+ L DEM ++M+PN +++ VL ACAQ ++
Sbjct: 273 MEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALE 332
Query: 216 LGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLST--RDVVVWNSIISA 262
G+ IH + +HL+++ C ++ + F+ ++ ++++ WN++I+A
Sbjct: 333 RGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITA 392
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL------GTGSFV-- 314
+ G V+A+ + +++ A V+P+ VT + +L C + GL GT V
Sbjct: 393 YASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEP 452
Query: 315 ----WNALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMISV 352
+ ++D+ GR G + +++++ MP + S W +++
Sbjct: 453 RVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAA 495
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/303 (24%), Positives = 130/303 (42%), Gaps = 58/303 (19%)
Query: 110 FIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLA 169
FIK G+ + + + + ++ YA L + F +I + +N+++
Sbjct: 92 FIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIR 151
Query: 170 GYALGGFREEVTNLLDEMEMIQ-TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-- 226
Y G L+ + + + +L VL +CA + V +G+ +HG LR
Sbjct: 152 AYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVG 211
Query: 227 ---------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL- 276
I + CG + + +F+++ RD+ WN++I+ +++ G++ A DL
Sbjct: 212 LEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFE 271
Query: 277 ----RDVIV----------------------------ANVKPNTVTIVSVLPACLKLAAL 304
R+++ + +KPN VTIVSVLPAC + AAL
Sbjct: 272 RMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAAL 331
Query: 305 PQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH--KNLVSWNVMIS 351
+G L S V AL MY +C ++ ++R F ++ KNL++WN MI+
Sbjct: 332 ERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMIT 391
Query: 352 VYG 354
Y
Sbjct: 392 AYA 394
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 25/183 (13%)
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSV 244
P+ S + + + +KLG+ H ++ H + + + G + + V
Sbjct: 75 PHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVV 134
Query: 245 FNQLSTRDVVVWNSIISAFVRSGQVVDA---LDLLRDVIVANVKPNTVTIVSVLPACLKL 301
F+++ +++NSII A+ R G L+ + + + T+ VL +C L
Sbjct: 135 FDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADL 194
Query: 302 AAL-------PQGLGTG----SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ + QGL G +V +LIDMY +CG I +RK+F M +++ SWN +I
Sbjct: 195 SRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALI 254
Query: 351 SVY 353
+ Y
Sbjct: 255 AGY 257
>gi|302788478|ref|XP_002976008.1| hypothetical protein SELMODRAFT_104228 [Selaginella moellendorffii]
gi|300156284|gb|EFJ22913.1| hypothetical protein SELMODRAFT_104228 [Selaginella moellendorffii]
Length = 495
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/343 (27%), Positives = 158/343 (46%), Gaps = 54/343 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W++M+ Y G +++ + LF M ++GV P+ V AC+ + G+ ++
Sbjct: 43 SWSTMVAAYAQRGDHDQALVLFQKMEEEGVEPNEVTFLSVLDACANAEAVEQGEMIHRL- 101
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
V R LD+ +V +L+ Y KC L +
Sbjct: 102 ----------VARKKLDV-------------------GLIVGTALVGMYGKCSRLIEARQ 132
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F I +KD+V+W+ M++ YA G E L M + ++PN I L +L AC+
Sbjct: 133 VFDGIVEKDVVTWSTMISAYAQLGHVREAIQLFGYMNL--DGVRPNEIILMSILGACSSA 190
Query: 212 KGVKLGKAIHGYVL-----------RHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ GK H V+ I + CG + + +VF + RD++ W++++
Sbjct: 191 GALAEGKMTHELVVICGFGADVSTGNTLIKMYGKCGDLASAKAVFGGMERRDLISWSAML 250
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLG 309
+ G DA R + + VKP+ VT VS+L AC L AL +G
Sbjct: 251 AVIAEHGHCKDAFVHFRRMDLEGVKPDYVTFVSLLDACSLLGALVEGHVIHTRIRAEGFQ 310
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+ ++ N+LIDMYG+CG++Q +R+IF M H+N+++W MI+
Sbjct: 311 SVMYIENSLIDMYGKCGSLQAAREIFDRMSHRNVITWTTMITA 353
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 131/244 (53%), Gaps = 24/244 (9%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
V NSL++ Y KC ++ + F + ++++SW+ M+A YA G ++ L +ME
Sbjct: 11 FVGNSLLNMYGKCGGVEEAREFFESMTHRNVISWSTMVAAYAQRGDHDQALVLFQKME-- 68
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS----TA-------CGFVI 239
+ ++PN ++ VL ACA + V+ G+ IH V R + + TA C +I
Sbjct: 69 EEGVEPNEVTFLSVLDACANAEAVEQGEMIHRLVARKKLDVGLIVGTALVGMYGKCSRLI 128
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ VF+ + +DVV W+++ISA+ + G V +A+ L + + V+PN + ++S+L AC
Sbjct: 129 EARQVFDGIVEKDVVTWSTMISAYAQLGHVREAIQLFGYMNLDGVRPNEIILMSILGACS 188
Query: 300 KLAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
AL +G T V N LI MYG+CG + ++ +F M ++L+SW+
Sbjct: 189 SAGALAEGKMTHELVVICGFGADVSTGNTLIKMYGKCGDLASAKAVFGGMERRDLISWSA 248
Query: 349 MISV 352
M++V
Sbjct: 249 MLAV 252
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 153/347 (44%), Gaps = 60/347 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W++M+ Y LG+ E + LF M GVRP+ + + ACS GK ++
Sbjct: 144 TWSTMISAYAQLGHVREAIQLFGYMNLDGVRPNEIILMSILGACSSAGALAEGKMTHE-- 201
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
L + CG D N+LI Y KC L +
Sbjct: 202 -----------------LVVICG-----------FGADVSTGNTLIKMYGKCGDLASAKA 233
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++++DL+SW+AMLA A G ++ M++ ++P+ ++ +L AC+ +
Sbjct: 234 VFGGMERRDLISWSAMLAVIAEHGHCKDAFVHFRRMDL--EGVKPDYVTFVSLLDACSLL 291
Query: 212 KGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ G IH Y+ I + CG + + +F+++S R+V+ W ++I
Sbjct: 292 GALVEGHVIHTRIRAEGFQSVMYIENSLIDMYGKCGSLQAAREIFDRMSHRNVITWTTMI 351
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL------------ 308
+A V+ Q +AL+L ++ A V+P+ V +S++ +C + +G
Sbjct: 352 TACVQHEQGKEALELFEEMEKAGVQPDQVAFLSIIHSCSHSGLVEEGRIYFLKMVEDQSF 411
Query: 309 --GTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
G FV ++D+ GR G + ++ ++ MP +V WN ++S
Sbjct: 412 TPGVEHFV--GMLDLLGRSGKLNEAEELMEFMPVEPGVVGWNTLLSA 456
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 72/130 (55%), Gaps = 11/130 (8%)
Query: 235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV 294
CG V + F ++ R+V+ W+++++A+ + G AL L + + V+PN VT +SV
Sbjct: 23 CGGVEEAREFFESMTHRNVISWSTMVAAYAQRGDHDQALVLFQKMEEEGVEPNEVTFLSV 82
Query: 295 LPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
L AC A+ QG L G V AL+ MYG+C + ++R++F + K++
Sbjct: 83 LDACANAEAVEQGEMIHRLVARKKLDVGLIVGTALVGMYGKCSRLIEARQVFDGIVEKDV 142
Query: 344 VSWNVMISVY 353
V+W+ MIS Y
Sbjct: 143 VTWSTMISAY 152
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 36/47 (76%)
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
GL G FV N+L++MYG+CG ++++R+ F M H+N++SW+ M++ Y
Sbjct: 5 GLCCGEFVGNSLLNMYGKCGGVEEAREFFESMTHRNVISWSTMVAAY 51
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/267 (19%), Positives = 111/267 (41%), Gaps = 54/267 (20%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W++M+ + G+ ++ F M +GV+PD+ + ACS L G ++ +
Sbjct: 245 SWSAMLAVIAEHGHCKDAFVHFRRMDLEGVKPDYVTFVSLLDACSLLGALVEGHVIHTRI 304
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F+ ++ L+D++ KCG ++ +F+ M SH
Sbjct: 305 RAEGFQSVMYIENSLIDMYGKCGSLQAAREIFDRM----------------------SH- 341
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+++++W M+ +E L +EME + +QP+ ++ ++ +C+
Sbjct: 342 -------RNVITWTTMITACVQHEQGKEALELFEEME--KAGVQPDQVAFLSIIHSCSHS 392
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V+ G+ Y L+ V +Q T V + ++ RSG++ +
Sbjct: 393 GLVEEGRI---YFLK----------------MVEDQSFTPGVEHFVGMLDLLGRSGKLNE 433
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPAC 298
A +L+ V+P V ++L AC
Sbjct: 434 AEELME---FMPVEPGVVGWNTLLSAC 457
>gi|224145066|ref|XP_002325515.1| predicted protein [Populus trichocarpa]
gi|222862390|gb|EEE99896.1| predicted protein [Populus trichocarpa]
Length = 683
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/401 (24%), Positives = 186/401 (46%), Gaps = 52/401 (12%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G Q+HAH I G E L +L+ + + W ++ Y
Sbjct: 60 GKQLHAHTISLGFENHLVLVPKLVTFYSSFSLLADAHTITVNSDIVNPLPWNLLISSYVN 119
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM-ISIKFEGNAC 101
G + E ++ + M+ KGVRPD+F P V KAC E D G++V++ + + N
Sbjct: 120 NGLHGEALSAYREMVHKGVRPDNFTYPSVLKACGEKLDLDFGREVHESINAAYGHRWNLY 179
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK--- 157
V L+ ++ K G ++ LF +M ++D + N +I YA K + F +++
Sbjct: 180 VHNSLVSMYGKFGELDAARRLFNQMPERDAVSWNGIISNYASRGLWKEAFELFEEMRLAG 239
Query: 158 -QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKL 216
+ ++++WN + G + LL +M D+ P + + L AC+ + +KL
Sbjct: 240 AEVNIITWNTIAGGCVQTRNFKGALELLSQMRRCDIDLDPVAMIIG--LGACSHIGAIKL 297
Query: 217 GKAIHGYVLRH-----------HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVR 265
G IH +R I + + C + + +F + T+ + WNS++S +
Sbjct: 298 GTVIHASAIRSCFDGFDNVRNALITMYSRCKDLRHADILFKSIKTKSLTTWNSMLSGYTH 357
Query: 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----------- 314
+ +A L R+++ + ++PN VTI S+LP C ++A L QG ++
Sbjct: 358 MDRSEEASFLFREMLFSGIEPNYVTIASILPHCARVANLQQGKEFHCYIMRREGFEDYLL 417
Query: 315 -WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
WN+L++MY R G + ++++F + ++ V++ +I+ YG
Sbjct: 418 LWNSLVEMYARSGKVLSAKRVFDSLRRRDKVTYTSLIAGYG 458
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 163/353 (46%), Gaps = 40/353 (11%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W ++ Y G ++E LF M G + + C + ++++ ++ M
Sbjct: 211 SWNGIISNYASRGLWKEAFELFEEMRLAGAEVNIITWNTIAGGCVQTRNFKGALELLSQM 270
Query: 92 ---------ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAK 142
+++ AC IK G + S + D V N+LI Y++
Sbjct: 271 RRCDIDLDPVAMIIGLGACSHIGA----IKLGTVIHASAIRSCFDGFDNVRNALITMYSR 326
Query: 143 CRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLS 202
C+ L+ + F IK K L +WN+ML+GY EE + L EM+ + ++PN ++++
Sbjct: 327 CKDLRHADILFKSIKTKSLTTWNSMLSGYTHMDRSEEASFLF--REMLFSGIEPNYVTIA 384
Query: 203 GVLAACAQVKGVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLST 250
+L CA+V ++ GK H Y++R + + G V+ + VF+ L
Sbjct: 385 SILPHCARVANLQQGKEFHCYIMRREGFEDYLLLWNSLVEMYARSGKVLSAKRVFDSLRR 444
Query: 251 RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG--- 307
RD V + S+I+ + G+ AL L ++I +KP+ VT+V+VL AC + +G
Sbjct: 445 RDKVTYTSLIAGYGIQGEGKTALKLFDEMIKHRIKPDQVTMVAVLSACSHSGLVTEGNVL 504
Query: 308 -------LGTGSFV--WNALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMI 350
G V ++ ++D++GR G + K++K+ MP++ + W ++
Sbjct: 505 FEKMSTLYGIVPAVEHFSCMVDLFGRAGLLNKAKKVITSMPYRPTTAMWATLV 557
>gi|115458828|ref|NP_001053014.1| Os04g0463800 [Oryza sativa Japonica Group]
gi|38347057|emb|CAE04357.2| OSJNBa0060P14.4 [Oryza sativa Japonica Group]
gi|113564585|dbj|BAF14928.1| Os04g0463800 [Oryza sativa Japonica Group]
Length = 767
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 103/346 (29%), Positives = 168/346 (48%), Gaps = 53/346 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTS++G Y G+ E+ V LF M + G++PD V + R GK +
Sbjct: 283 SWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFH--- 339
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
A V+R D L+ N+LI YAKC+ + ++
Sbjct: 340 -------AAIVRRNFGD--------------------SVLIGNALISMYAKCKQVDIAAT 372
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNTISLSGVLAACAQ 210
F + Q+D SW++M+ Y G + L EM+ D + +T SL ++++C++
Sbjct: 373 VFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSR 432
Query: 211 VKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ ++LG++ H Y ++H I + CG + +F + T+DVV W+++
Sbjct: 433 LGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSAL 492
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN--- 316
IS++ G DAL L ++ VKPN+ T+VSV+ +C LAAL G S V +
Sbjct: 493 ISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGL 552
Query: 317 --------ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
AL+DMY +CG + +RK+F M +++V+WNVMIS YG
Sbjct: 553 ECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYG 598
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 124/247 (50%), Gaps = 27/247 (10%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V +SL Y KC + + F ++ +KDLVSW +++ Y G E+ L ME +
Sbjct: 252 VVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGME--E 309
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVIC 240
+ +QP+ + +S +LA V+ GK H ++R + I + C V
Sbjct: 310 SGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDI 369
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP---NTVTIVSVLPA 297
+ +VF L RD W+S++ A+ ++G + L+L R++ + +T +++S++ +
Sbjct: 370 AATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISS 429
Query: 298 CLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
C +L L G G S V NALI MYGRCG +RKIF ++ K++V+W
Sbjct: 430 CSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTW 489
Query: 347 NVMISVY 353
+ +IS Y
Sbjct: 490 SALISSY 496
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 119/230 (51%), Gaps = 24/230 (10%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V N+LI Y +C V+ F +K KD+V+W+A+++ Y+ G ++ L D+M +
Sbjct: 457 VANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQM--LT 514
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVIC 240
++PN+ +L V+++CA + ++ G+ IH +V L + + TA CG +
Sbjct: 515 EGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGI 574
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ +F+ + RDVV WN +IS + G+ + AL L + NVKPN++T +++L AC
Sbjct: 575 ARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCH 634
Query: 301 LAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+ +G L + ++D+ G+ G +Q++ + MP
Sbjct: 635 AGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMP 684
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/345 (22%), Positives = 147/345 (42%), Gaps = 51/345 (14%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ + + ++ M G RP F P V A +EL VG V+ Y
Sbjct: 75 WNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAY-- 132
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
S++F GL E D V +SL+ YA+C ++ +
Sbjct: 133 SVRF------------------------GLLEG-DGSVAVASSLVYMYARCGSVRDAVRL 167
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD--MQPNTISLSGVLAACAQ 210
F ++ ++D+V+W A+++G G E + L M D +PN+ ++ L AC
Sbjct: 168 FDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGV 227
Query: 211 VKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ + +G +HG+ ++ + + T C + +F +L +D+V W S+
Sbjct: 228 LGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSL 287
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA-----------CLKLAALPQGL 308
I A+ R+G A++L + + ++P+ V I +L A + +
Sbjct: 288 IGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNF 347
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G + NALI MY +C + + +F ++ ++ SW+ M+ Y
Sbjct: 348 GDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAY 392
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 31/223 (13%)
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D WN++L + + L M + +P+ + V +A A++ + +G A
Sbjct: 71 DAFLWNSLLRSRHRAS--DFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAA 128
Query: 220 IHGYVLRHH--------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVR 265
+H Y +R +++ CG V + +F+++ RDVV W ++IS V
Sbjct: 129 VHAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVC 188
Query: 266 SGQVVDALDLL----RDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGT 310
+GQ + L L R +PN+ T+ S L AC L L G+G
Sbjct: 189 NGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGH 248
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V ++L MY +C + + +R +F +P K+LVSW +I Y
Sbjct: 249 CPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAY 291
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 91/189 (48%), Gaps = 32/189 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W++++ Y+ LG+ ++ + L+ M+ +GV+P+ V +C+ L G+ ++ ++
Sbjct: 488 TWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHV 547
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ E + + L+D+++KCG++ I +F+ M
Sbjct: 548 KDVGLECDLSICTALVDMYMKCGQLGIARKMFDSM------------------------- 582
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
++D+V+WN M++GY + G + L ME + +++PN+++ +L+AC
Sbjct: 583 -----LERDVVTWNVMISGYGMHGEAIQALKLFSMME--RGNVKPNSLTFLAILSACCHA 635
Query: 212 KGVKLGKAI 220
V G+ +
Sbjct: 636 GLVDKGREL 644
>gi|222629009|gb|EEE61141.1| hypothetical protein OsJ_15084 [Oryza sativa Japonica Group]
Length = 897
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 103/346 (29%), Positives = 168/346 (48%), Gaps = 53/346 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTS++G Y G+ E+ V LF M + G++PD V + R GK +
Sbjct: 283 SWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFH--- 339
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
A V+R D L+ N+LI YAKC+ + ++
Sbjct: 340 -------AAIVRRNFGD--------------------SVLIGNALISMYAKCKQVDIAAT 372
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNTISLSGVLAACAQ 210
F + Q+D SW++M+ Y G + L EM+ D + +T SL ++++C++
Sbjct: 373 VFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSR 432
Query: 211 VKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ ++LG++ H Y ++H I + CG + +F + T+DVV W+++
Sbjct: 433 LGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSAL 492
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN--- 316
IS++ G DAL L ++ VKPN+ T+VSV+ +C LAAL G S V +
Sbjct: 493 ISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGL 552
Query: 317 --------ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
AL+DMY +CG + +RK+F M +++V+WNVMIS YG
Sbjct: 553 ECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYG 598
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 125/247 (50%), Gaps = 27/247 (10%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V +SL Y KC + + F ++ +KDLVSW +++ Y G E+ L ME +
Sbjct: 252 VVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGME--E 309
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVIC 240
+ +QP+ + +S +LA V+ GK H ++R + I + C V
Sbjct: 310 SGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDI 369
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN---VKPNTVTIVSVLPA 297
+ +VF L RD W+S++ A+ ++G + L+L R++ + + +T +++S++ +
Sbjct: 370 AATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISS 429
Query: 298 CLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
C +L L G G S V NALI MYGRCG +RKIF ++ K++V+W
Sbjct: 430 CSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTW 489
Query: 347 NVMISVY 353
+ +IS Y
Sbjct: 490 SALISSY 496
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 119/230 (51%), Gaps = 24/230 (10%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V N+LI Y +C V+ F +K KD+V+W+A+++ Y+ G ++ L D+M +
Sbjct: 457 VANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQM--LT 514
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVIC 240
++PN+ +L V+++CA + ++ G+ IH +V L + + TA CG +
Sbjct: 515 EGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGI 574
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ +F+ + RDVV WN +IS + G+ + AL L + NVKPN++T +++L AC
Sbjct: 575 ARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCH 634
Query: 301 LAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+ +G L + ++D+ G+ G +Q++ + MP
Sbjct: 635 AGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMP 684
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/345 (22%), Positives = 147/345 (42%), Gaps = 51/345 (14%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ + + ++ M G RP F P V A +EL VG V+ Y
Sbjct: 75 WNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAY-- 132
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
S++F GL E D V +SL+ YA+C ++ +
Sbjct: 133 SVRF------------------------GLLEG-DGSVAVASSLVYMYARCGSVRDAVRL 167
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD--MQPNTISLSGVLAACAQ 210
F ++ ++D+V+W A+++G G E + L M D +PN+ ++ L AC
Sbjct: 168 FDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGV 227
Query: 211 VKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ + +G +HG+ ++ + + T C + +F +L +D+V W S+
Sbjct: 228 LGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSL 287
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA-----------CLKLAALPQGL 308
I A+ R+G A++L + + ++P+ V I +L A + +
Sbjct: 288 IGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNF 347
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G + NALI MY +C + + +F ++ ++ SW+ M+ Y
Sbjct: 348 GDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAY 392
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 31/223 (13%)
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D WN++L + + L M + +P+ + V +A A++ + +G A
Sbjct: 71 DAFLWNSLLRSRHRAS--DFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAA 128
Query: 220 IHGYVLRHH--------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVR 265
+H Y +R +++ CG V + +F+++ RDVV W ++IS V
Sbjct: 129 VHAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVC 188
Query: 266 SGQVVDALDLL----RDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGT 310
+GQ + L L R +PN+ T+ S L AC L L G+G
Sbjct: 189 NGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGH 248
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V ++L MY +C + + +R +F +P K+LVSW +I Y
Sbjct: 249 CPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAY 291
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 91/189 (48%), Gaps = 32/189 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W++++ Y+ LG+ ++ + L+ M+ +GV+P+ V +C+ L G+ ++ ++
Sbjct: 488 TWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHV 547
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ E + + L+D+++KCG++ I +F+ M
Sbjct: 548 KDVGLECDLSICTALVDMYMKCGQLGIARKMFDSM------------------------- 582
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
++D+V+WN M++GY + G + L ME + +++PN+++ +L+AC
Sbjct: 583 -----LERDVVTWNVMISGYGMHGEAIQALKLFSMME--RGNVKPNSLTFLAILSACCHA 635
Query: 212 KGVKLGKAI 220
V G+ +
Sbjct: 636 GLVDKGREL 644
>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Glycine max]
Length = 748
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 105/385 (27%), Positives = 188/385 (48%), Gaps = 64/385 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+++S++ + ++ ++ F + + PD F+ P K+C+ L+ G+ ++ +
Sbjct: 71 SFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFA 130
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSH 150
+ F ++ V L +++KC R+ LF+ M D+D +V +++I Y++ ++ +
Sbjct: 131 AASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAK 190
Query: 151 CKFSKIK----QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
F +++ + +LVSWN MLAG+ GF +E + M ++Q P+ ++S VL
Sbjct: 191 ELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMF-RMMLVQ-GFWPDGSTVSCVLP 248
Query: 207 ACAQVKGVKLGKAIHGYVLRH-------------HIHLSTAC------------------ 235
A ++ V +G +HGYV++ ++ C
Sbjct: 249 AVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGS 308
Query: 236 -----------GFVICSCSVFNQLSTR----DVVVWNSIISAFVRSGQVVDALDLLRDVI 280
G V + VFN+ + +VV W SII++ ++G+ ++AL+L RD+
Sbjct: 309 LNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQ 368
Query: 281 VANVKPNTVTIVSVLPACLKLAALPQG-------LGTGSF----VWNALIDMYGRCGAIQ 329
V+PN VTI S++PAC ++AL G L G F V +ALIDMY +CG IQ
Sbjct: 369 AYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQ 428
Query: 330 KSRKIFVLMPHKNLVSWNVMISVYG 354
+R+ F M NLVSWN ++ Y
Sbjct: 429 LARRCFDKMSALNLVSWNAVMKGYA 453
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/349 (21%), Positives = 161/349 (46%), Gaps = 31/349 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W M+ + G+Y+E V +F +M+ +G PD V A L+D VG V+ Y+
Sbjct: 207 SWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYV 266
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSH 150
I + V +LD++ KCG ++ S +F+E+++ + N+ + ++ + +
Sbjct: 267 IKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTAL 326
Query: 151 CKFSKIKQK----DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
F+K K + ++V+W +++A + G E L +M+ ++PN +++ ++
Sbjct: 327 EVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAY--GVEPNAVTIPSLIP 384
Query: 207 ACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVV 255
AC + + GK IH + LR I + CG + + F+++S ++V
Sbjct: 385 ACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVS 444
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ--------- 306
WN+++ + G+ + +++ ++ + KP+ VT VL AC + +
Sbjct: 445 WNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMS 504
Query: 307 ---GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMIS 351
G+ + L+ + R G ++++ I MP + W ++S
Sbjct: 505 EEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLS 553
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 118/283 (41%), Gaps = 62/283 (21%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKF---SKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
D + SL+ FYA L S + L S+++++ +A V
Sbjct: 34 DTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSSLIHAFARSHHFPHVLTTFS 93
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY-----------VLRHHIHLSTA 234
+ ++ + P+ L + +CA ++ + G+ +H + V H+
Sbjct: 94 HLHPLR--LIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLK 151
Query: 235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV----- 289
C ++ + +F+++ RDVVVW+++I+ + R G V +A +L ++ V+PN V
Sbjct: 152 CDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGM 211
Query: 290 ------------------------------TIVSVLPA--CLKLA---------ALPQGL 308
T+ VLPA CL+ + QGL
Sbjct: 212 LAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGL 271
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
G+ FV +A++DMYG+CG +++ ++F + + S N ++
Sbjct: 272 GSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLT 314
>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 834
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 101/398 (25%), Positives = 184/398 (46%), Gaps = 74/398 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q+HAH++ G+E+ A L + L++ + +WT+++
Sbjct: 265 LEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSG 324
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y ++E + LF M G++PD + C + +C+ L G V+ Y I GN
Sbjct: 325 YKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANL-GN 383
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D V NSLID YAKC L + F
Sbjct: 384 -----------------------------DSYVTNSLIDMYAKCDCLTDARKVFDIFAAA 414
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDM-QPNTISLSGVLAACAQVKGVKLGK 218
D+V +NAM+ GY+ G + E+ L+ ++ + +P+ ++ +L A A + + L K
Sbjct: 415 DVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSK 474
Query: 219 AIHGYVLRHHIHLSTACGFVI------CSCS-----VFNQLSTRDVVVWNSIISAFVRSG 267
IHG + ++ ++L G + C C VF+++ +D+V+WNS+ + +V+
Sbjct: 475 QIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQS 534
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLGTGSFVWN 316
+ +AL+L ++ ++ +P+ T +++ A LA+ L +GL ++ N
Sbjct: 535 ENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITN 594
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
AL+DMY +CG+ + + K F +++V WN +IS Y
Sbjct: 595 ALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYA 632
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 87/347 (25%), Positives = 158/347 (45%), Gaps = 57/347 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WT+M+ +G + LFY +++ V PD ++ V ACS L GK ++ ++
Sbjct: 216 TWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHI 275
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ E +A + L+D ++KCGR + +H
Sbjct: 276 LRYGLEMDASLMNVLIDSYVKCGR------------------------------VIAAHK 305
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ + K+++SW +L+GY +E L M + ++P+ + S +L +CA +
Sbjct: 306 LFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMS--KFGLKPDMYACSSILTSCASL 363
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ G +H Y ++ + I + C + + VF+ + DVV++N++I
Sbjct: 364 HALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMI 423
Query: 261 SAFVRSG---QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQ 306
+ R G ++ +AL++ RD+ ++P+ +T VS+L A L +L
Sbjct: 424 EGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKY 483
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
GL F +ALID+Y C ++ SR +F M K+LV WN M + Y
Sbjct: 484 GLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGY 530
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 92/396 (23%), Positives = 167/396 (42%), Gaps = 79/396 (19%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYN 41
G QVHA+ I + +++ + L++++ + +M+ Y+
Sbjct: 368 FGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYS 427
Query: 42 VLGYY---EEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
LG E +N+F M + +RP + +A + L + K ++ M
Sbjct: 428 RLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMF------ 481
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
K G ++ D ++LID Y+ C LK S F ++K
Sbjct: 482 -------------KYG-----------LNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKV 517
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
KDLV WN+M AGY EE NL E+++ + +P+ + + ++ A + V+LG+
Sbjct: 518 KDLVIWNSMFAGYVQQSENEEALNLFLELQLSRE--RPDEFTFANMVTAAGNLASVQLGQ 575
Query: 219 AIH-----------GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
H Y+ + + CG + F+ ++RDVV WNS+IS++ G
Sbjct: 576 EFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHG 635
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------WN 316
+ AL +L ++ ++PN +T V VL AC + GL + +
Sbjct: 636 EGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEHYV 695
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMIS 351
++ + GR G + K+R++ MP K + W ++S
Sbjct: 696 CMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLS 731
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 116/252 (46%), Gaps = 25/252 (9%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
++ D ++N LI+ Y++ + + F K+ +++LVSW+ M++ G EE +
Sbjct: 75 LELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFL 134
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKG-------------VKLGKAIHGYVLRHHIHLS 232
E + D PN LS + AC+ + G VK G YV I
Sbjct: 135 EFWRTRKD-SPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFY 193
Query: 233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
G + + VF+ L + V W ++IS V+ G+ +L L ++ NV P+ +
Sbjct: 194 LKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILS 253
Query: 293 SVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK 341
+VL AC L L GL + + N LID Y +CG + + K+F MP+K
Sbjct: 254 TVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNK 313
Query: 342 NLVSWNVMISVY 353
N++SW ++S Y
Sbjct: 314 NIISWTTLLSGY 325
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
GL +++ N LI++Y R G + +RK+F MP +NLVSW+ M+S
Sbjct: 74 GLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSA 119
>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
[Vitis vinifera]
Length = 612
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 96/347 (27%), Positives = 171/347 (49%), Gaps = 28/347 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ + GY++E + + G++ + F V C +LK+ + + V+ +
Sbjct: 159 SWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQI 218
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSH 150
+ F N + +LD ++KCG M LF+EM +D L +++ YAK +K ++
Sbjct: 219 LVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSAN 278
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ +K+ VSW A+++GYA G + L +M + ++P+ + S L ACA
Sbjct: 279 ELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFH--VRPDQFTFSSCLCACAS 336
Query: 211 VKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTR-DVVVWNS 258
+ +K GK IH Y+LR + I + + CG + VF+ + + DVV+WN+
Sbjct: 337 IASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNT 396
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG--------- 309
IISA + G +A+ +L D++ + KP+ +T V +L AC + QGL
Sbjct: 397 IISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDY 456
Query: 310 ---TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
+ LID+ GR G ++ MP+K + WN ++ V
Sbjct: 457 GIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNALLGV 503
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 102/367 (27%), Positives = 176/367 (47%), Gaps = 70/367 (19%)
Query: 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP-- 105
E V+ + +G+R D + + C++ + R GK V+ + +K G +KRP
Sbjct: 42 EAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVH---LHLKLTG---LKRPGT 95
Query: 106 -----LLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKIKQK 159
L++++ KCG+ +F++M L + N+++ YAK +K + F K+ +K
Sbjct: 96 FLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEK 155
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSWN M+ +A G+ +E E Q +Q N S +GVL C ++K V L +
Sbjct: 156 DVVSWNTMVIAHAQCGYWDEALRFYSEFR--QLGIQCNGFSFAGVLTVCVKLKEVGLTRQ 213
Query: 220 IHGYVL----RHHIHLSTA-------CGFVICSCSVFNQLSTRDV--------------- 253
+HG +L ++ LS++ CG + + +F+++S RDV
Sbjct: 214 VHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGD 273
Query: 254 ----------------VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
V W ++IS + R+G AL+L +++ +V+P+ T S L A
Sbjct: 274 MKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCA 333
Query: 298 CLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVS 345
C +A+L G + V +ALIDMY +CG++ RK+F LM +K ++V
Sbjct: 334 CASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVL 393
Query: 346 WNVMISV 352
WN +IS
Sbjct: 394 WNTIISA 400
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 12/107 (11%)
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG---------- 309
I + ++ +A+ L ++ ++ ++ T+ S+L C AL +G
Sbjct: 31 IVKLCKKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGL 90
Query: 310 --TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G+F+ N LI+MY +CG ++RK+F M +NL SWN M+S Y
Sbjct: 91 KRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYA 137
>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Brachypodium distachyon]
Length = 870
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 97/345 (28%), Positives = 171/345 (49%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ G Y++ + LF M +G D V AC+EL +G+ V+ Y
Sbjct: 264 SWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYS 323
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ K G + TS + N L+D Y+ C + ++
Sbjct: 324 V-------------------KTGFISQTS-----------LANVLLDMYSNCSDWRSTNK 353
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + QK++VSW AM+ Y G ++V L EM + T +P+ +++ L A A
Sbjct: 354 IFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGT--RPDIFAITSALHAFAGN 411
Query: 212 KGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ +K GK++HGY +R+ + + CG + + +F+ + ++D++ WN++I
Sbjct: 412 ELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLI 471
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTG-- 311
+ R+ +A L ++++ ++PN VT+ +LPA L++L +G L G
Sbjct: 472 GGYSRNNLANEAFSLFTEMLL-QLRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYL 530
Query: 312 --SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
FV NALIDMY +CGA+ +R++F + +KNL+SW +M++ YG
Sbjct: 531 EDDFVANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYG 575
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 130/278 (46%), Gaps = 44/278 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ Y G Y+++ LF M +G RPD F A + + + GK V+ Y
Sbjct: 365 SWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYA 424
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I M++ V N+L++ Y KC ++ +
Sbjct: 425 IR------------------------------NGMEKVLAVTNALMEMYVKCGNMEEAKL 454
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + KD++SWN ++ GY+ E +L EM ++Q ++PN ++++ +L A A +
Sbjct: 455 IFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEM-LLQ--LRPNAVTMTCILPAAASL 511
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ G+ +H Y LR I + CG ++ + +F++LS ++++ W ++
Sbjct: 512 SSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMV 571
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ + G+ DA+ L + V+ + P+ + ++L AC
Sbjct: 572 AGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYAC 609
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 154/343 (44%), Gaps = 54/343 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT++M Y G E V LF M GVRPD + V K + L G+ V+ +
Sbjct: 164 WTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLE 223
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ F G+ C V N+L+ FYAK K +
Sbjct: 224 KLGF-GSQCA-----------------------------VGNALMAFYAKSNRTKDAILV 253
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + +D++SWN+M++G G ++ L M + ++ ++ +L VL ACA++
Sbjct: 254 FDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEEL--DSATLLSVLPACAELH 311
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVI----CSCS-------VFNQLSTRDVVVWNSIIS 261
+ LG+ +HGY ++ T+ V+ +CS +F + ++VV W ++I+
Sbjct: 312 LLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMIT 371
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-------- 313
++ R+G L +++ + +P+ I S L A L G +
Sbjct: 372 SYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEK 431
Query: 314 ---VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V NAL++MY +CG +++++ IF + K+++SWN +I Y
Sbjct: 432 VLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGY 474
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 118/248 (47%), Gaps = 25/248 (10%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-KDLVSWNAMLAGYALGGFREEVTNLLDEM 187
D ++ L+ Y KC L+ + F ++ Q D+ W A+++GYA G E L +M
Sbjct: 128 DNVLGQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKM 187
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICS------ 241
++P+ ++S VL A + ++ G+ +HG + + A G + +
Sbjct: 188 HC--CGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSN 245
Query: 242 -----CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296
VF+ + RDV+ WNS+IS +G A++L + + + ++ T++SVLP
Sbjct: 246 RTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLP 305
Query: 297 ACLKLAAL-----------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
AC +L L G + + + N L+DMY C + + KIF M KN+VS
Sbjct: 306 ACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVS 365
Query: 346 WNVMISVY 353
W MI+ Y
Sbjct: 366 WTAMITSY 373
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 95/228 (41%), Gaps = 54/228 (23%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G VH + I G+E + + L+E++ +W +++G Y+
Sbjct: 417 GKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSR 476
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
E +LF M+ + +RP+ + A + L G++++ Y + +
Sbjct: 477 NNLANEAFSLFTEMLLQ-LRPNAVTMTCILPAAASLSSLERGREMHAYALRRGY------ 529
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
++ DF V N+LID Y KC L ++ F ++ K+L+
Sbjct: 530 -----------------------LEDDF-VANALIDMYVKCGALLLARRLFDRLSNKNLI 565
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
SW M+AGY + G + L ++M + + + P+ S S +L AC+
Sbjct: 566 SWTIMVAGYGMHGRGRDAIALFEQMRV--SGIAPDAASFSAILYACSH 611
>gi|125527494|gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
Length = 608
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 171/338 (50%), Gaps = 24/338 (7%)
Query: 35 SMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI 94
+++ + L ++E+++ F + +G P V K+C+ L R GK V+ + I
Sbjct: 55 TLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAILAASRQGKQVHCHAIVR 114
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKF 153
G+ V+ L+D + K G M+ +F+EM +D + N LI Y+K + + F
Sbjct: 115 GLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLF 174
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG 213
+ ++ SWN+M+A YA GG +E L M+ +PN I+++ + + CA+
Sbjct: 175 DGMVRRTSASWNSMIACYAHGGEYQEALRLF--RRMLSEGARPNAITIATMFSICAKTGD 232
Query: 214 VKLGKAIHGYVLRHH-----IHLSTACGFVICSC-----SVFNQLSTRDVVVWNSIISAF 263
++ GK + +H + +V C F+++ RDVV W+++I+ +
Sbjct: 233 LETGKWARSLIAEQDLQNMIVHTALMEMYVKCQAIDEARREFDRMQQRDVVAWSTMIAGY 292
Query: 264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLGTGS 312
++G+ ++L+L + + KPN VT+V VL AC +L + Q L S
Sbjct: 293 AQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTS 352
Query: 313 FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
++ +ALIDMY +CG + ++R +F M HK +++WN M+
Sbjct: 353 YLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMM 390
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 163/349 (46%), Gaps = 65/349 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y G Y+E + LF M+ +G RP+ ++ C++ D GK
Sbjct: 184 SWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGK------ 237
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSH 150
L E D Q+ +V+ +L++ Y KC+ + +
Sbjct: 238 --------------------------WARSLIAEQDLQNMIVHTALMEMYVKCQAIDEAR 271
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+F +++Q+D+V+W+ M+AGYA G E L + M+ T +PN ++L GVL+ACAQ
Sbjct: 272 REFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKA--TSCKPNEVTLVGVLSACAQ 329
Query: 211 VKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSI 259
+ +LG I +V ++ L+ T CG V + SVFN++ + V+ WNS+
Sbjct: 330 LGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSM 389
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN--- 316
+ +G DA+ L +++ +V+PN +T V++L AC + QG+ SF
Sbjct: 390 MRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGM---SFFKEMKT 446
Query: 317 ------------ALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
++D+ + G ++++ K M N V W+ ++S
Sbjct: 447 IHHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSA 495
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
+ G V+ + +F+ + R WNS+I+ + G+ +AL L R ++ +PN +TI
Sbjct: 162 SKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIA 221
Query: 293 SVLPACLKLAALPQGLGTGSF----------VWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
++ C K L G S V AL++MY +C AI ++R+ F M ++
Sbjct: 222 TMFSICAKTGDLETGKWARSLIAEQDLQNMIVHTALMEMYVKCQAIDEARREFDRMQQRD 281
Query: 343 LVSWNVMISVYG 354
+V+W+ MI+ Y
Sbjct: 282 VVAWSTMIAGYA 293
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 30/142 (21%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
ELG Q+ +H+ + L ++LGS L++++ W SMM
Sbjct: 334 ELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGL 393
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM-----ISIK 95
+ G+ ++ + L+ M ++ V+P+ + AC+ G + M +S +
Sbjct: 394 ALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQ 453
Query: 96 FEGNACVKRPLLDLFIKCGRME 117
E AC+ +DL K GR+
Sbjct: 454 VEHCACI----VDLLCKSGRLR 471
>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
Length = 747
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 163/349 (46%), Gaps = 31/349 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFY-LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W SM+ N G+ E + F ++ D ++PD F AC+ L+ GK ++ Y
Sbjct: 206 SWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGY 265
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM---DQDFLVNNSLIDFYAKCRYLK 147
++ F+ + V L+ ++ K G +EI + E+ D D + +L++ Y K +
Sbjct: 266 IVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDIT 325
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
+ F+ +K D+V+W AM+ GY G + + M + +PN+ +L+ +L+A
Sbjct: 326 PARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTM--VSEGPRPNSFTLAAMLSA 383
Query: 208 CAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSC-----------SVFNQL-STRDVVV 255
+ V + GK IH +R LS + G + + VFN L RD V
Sbjct: 384 SSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVS 443
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW 315
W S+I A + G +A++L ++ +KP+ +T V VL AC + QG +
Sbjct: 444 WTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMK 503
Query: 316 NA------------LIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMIS 351
N ++D++GR G +Q++ K MP ++++W ++S
Sbjct: 504 NVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLS 552
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 121/285 (42%), Gaps = 59/285 (20%)
Query: 106 LLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
L++L+ K G LF EM + N+++ YAK L+ +H F I +D VSW
Sbjct: 16 LMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSW 75
Query: 165 NAMLAGY-ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
++ GY +G F + + +D M++ + P +L+ VLA+CA +GK +H +
Sbjct: 76 TTIIVGYNQMGRFEDAIKIFVD---MVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSF 132
Query: 224 VLRHHIH------------------------------------------LSTACGFVICS 241
V++ +H L CG V +
Sbjct: 133 VVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLA 192
Query: 242 CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV-ANVKPNTVTIVSVLPACLK 300
+ F LS RD+V WNS+I+ + G +AL ++ ++KP+ ++ S L AC
Sbjct: 193 LAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACAN 252
Query: 301 LAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKI 334
L L G V NALI MY + G ++ +R+I
Sbjct: 253 LEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRI 297
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 89/200 (44%), Gaps = 41/200 (20%)
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
N ++ YA GF + +L +EM ++T NTI LSG A G +
Sbjct: 14 NNLMNLYAKTGFHLDAHDLFNEMP-VKTTFSWNTI-LSGY--------------AKQGKL 57
Query: 225 LRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV 284
+ H VF+ + RD V W +II + + G+ DA+ + D++ V
Sbjct: 58 EKAH--------------QVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKV 103
Query: 285 KPNTVTIVSVLPACLKLAALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRK 333
P T+ +VL +C + G SF V N+L++MY + G ++ ++
Sbjct: 104 LPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKV 163
Query: 334 IFVLMPHKNLVSWNVMISVY 353
+F M +N SWN MIS++
Sbjct: 164 VFDRMKLRNTSSWNAMISLH 183
>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
Length = 732
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 104/397 (26%), Positives = 177/397 (44%), Gaps = 75/397 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF--CN-------------------WTSMMGM 39
+E G Q+HA+++ G E+ + + L++ + CN WT+M+
Sbjct: 154 LEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISG 213
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y + E + LF M G +PD F C V +C L+ G+ V+ Y I E N
Sbjct: 214 YMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESN 273
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
VK N LID YAK L + F + ++
Sbjct: 274 EFVK------------------------------NGLIDMYAKSNLLXDAKKVFDVMAEQ 303
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+++S+NAM+ GY+ E L EM + P+ ++ +L A + ++L K
Sbjct: 304 NVISYNAMIEGYSSQEKLSEALELFHEMRV--RLFPPSLLTFVSLLGVSASLFALELSKQ 361
Query: 220 IHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IHG +++ + L + C +V + VF +++ +D+VVWN++ + + +
Sbjct: 362 IHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLE 421
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNA 317
+AL L + + KPN T +++ A LA+L G L FV NA
Sbjct: 422 NEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNA 481
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L+DMY +CG+I+++RK+F +++V WN MIS +
Sbjct: 482 LVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHA 518
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 156/333 (46%), Gaps = 55/333 (16%)
Query: 44 GYYEEIVNLFY-LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
GY EE + +F L G P+ FV V +AC++L G ++ +++ F
Sbjct: 15 GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGF------ 68
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
DQD V SLIDFY+K ++V+ F ++ +K V
Sbjct: 69 ------------------------DQDVYVGTSLIDFYSKNGBIEVARLVFDQLLEKTAV 104
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+W ++AGY G L +M +T++ P+ +S VL+AC+ ++ ++ GK IH
Sbjct: 105 TWTTIIAGYTKCGRSXVSLELFAQMR--ETNVVPDRYVVSSVLSACSMLEFLEGGKQIHA 162
Query: 223 YVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
YVLR + T C V +F+Q+ ++++ W ++IS ++++ +
Sbjct: 163 YVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWE 222
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALID 320
A+ L ++ KP+ SVL +C L AL QG L + FV N LID
Sbjct: 223 AMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLID 282
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
MY + + ++K+F +M +N++S+N MI Y
Sbjct: 283 MYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGY 315
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 92/396 (23%), Positives = 169/396 (42%), Gaps = 75/396 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q+H ++ G + ++G+ L++ + WT+++
Sbjct: 53 VEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAG 112
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G + LF M + V PD +V V ACS L+ GK ++ Y+
Sbjct: 113 YTKCGRSXVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYV-------- 164
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
L + D V N LIDFY KC +K F ++ K
Sbjct: 165 ----------------------LRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVK 202
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+++SW M++GY F E L EM + +P+ + + VL +C ++ ++ G+
Sbjct: 203 NIISWTTMISGYMQNSFDWEAMKLFGEMNRL--GWKPDGFACTSVLTSCGSLEALEQGRQ 260
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H Y ++ + I + + + VF+ ++ ++V+ +N++I + +
Sbjct: 261 VHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEK 320
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNA 317
+ +AL+L ++ V P+ +T VS+L L AL G+ F +A
Sbjct: 321 LSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSLDLFAGSA 380
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
LID+Y +C ++ +R +F M K++V WN M Y
Sbjct: 381 LIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGY 416
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 87/381 (22%), Positives = 163/381 (42%), Gaps = 46/381 (12%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKG 60
+E G QVHA+ I +E F+ + L++++ + V E + Y + +G
Sbjct: 255 LEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEG 314
Query: 61 VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC------VKRPLLDLFIKCG 114
K+ +A + RV + + G + + + + L IK G
Sbjct: 315 YSSQE----KLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXG 370
Query: 115 RMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALG 174
+ D ++LID Y+KC Y+K + F ++ +KD+V WNAM GY
Sbjct: 371 -----------VSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQH 419
Query: 175 GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG-----------Y 223
EE L ++ + +PN + + ++ A + + ++ G+ H +
Sbjct: 420 LENEEALKLYSTLQF--SRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPF 477
Query: 224 VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283
V + + CG + + +FN RDVV WNS+IS + G+ +AL + R+++
Sbjct: 478 VTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEG 537
Query: 284 VKPNTVTIVSVLPACLKLAALPQGLG-----------TGSFVWNALIDMYGRCGAIQKSR 332
++PN VT V+VL AC + GL G+ + ++ + GR G + +++
Sbjct: 538 IQPNYVTFVAVLSACSHAGXVEDGLNHFNSMPGFGIKPGTEHYACVVSLLGRSGKLFEAK 597
Query: 333 KIFVLMP-HKNLVSWNVMISV 352
+ MP + W ++S
Sbjct: 598 EFIEKMPIEPAAIVWRSLLSA 618
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/319 (21%), Positives = 128/319 (40%), Gaps = 76/319 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+EL Q+H +I GV L F GS L++V+ W +M
Sbjct: 356 LELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFG 415
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y EE + L+ + +P+ F + A S L R G+ ++ ++ + +
Sbjct: 416 YTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFC 475
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V L+D++ KCG +E +F N+S+ +
Sbjct: 476 PFVTNALVDMYAKCGSIEEARKMF---------NSSI---------------------WR 505
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+V WN+M++ +A G EE + EM++ +QPN ++ VL+AC+ V+ G
Sbjct: 506 DVVCWNSMISTHAQHGEAEEALGMF--REMMKEGIQPNYVTFVAVLSACSHAGXVEDGLN 563
Query: 220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
H ++ GF I + + ++S RSG++ +A + + +
Sbjct: 564 ----------HFNSMPGFGIKPGTEH----------YACVVSLLGRSGKLFEAKEFIEKM 603
Query: 280 IVANVKPNTVTIVSVLPAC 298
++P + S+L AC
Sbjct: 604 ---PIEPAAIVWRSLLSAC 619
>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 1467
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 96/365 (26%), Positives = 174/365 (47%), Gaps = 29/365 (7%)
Query: 13 VCGVELCA--FLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPK 70
CG CA L++ +W S++G Y+ +E++ LF LM + V+ D K
Sbjct: 987 ACGALACARSVFNEMLVKDVVSWNSLIGGYSQHNRLKEVLTLFKLMQAEEVQADKVTMVK 1046
Query: 71 VYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQD 129
V AC+ L D+ + + Y+ E + + L+D + + G+++ +F +M D++
Sbjct: 1047 VISACTHLGDWSMADCMVRYIEHNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKN 1106
Query: 130 FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
+ N++I YAK L + F +I KDL+SW++M+ Y+ + L +M+
Sbjct: 1107 TVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQ- 1165
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-----------ACGFV 238
+ ++P+ + ++ VL+ACA + + LGK IH YV R++I T CG V
Sbjct: 1166 -RAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKADTIMENSLIDMFAKCGCV 1224
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ VF + +D + WNSII +G +ALD+ ++ +PN VT + VL AC
Sbjct: 1225 QEALQVFTDMEEKDTLSWNSIILGLANNGFEDEALDIFHSMLTEGPRPNEVTFLGVLIAC 1284
Query: 299 LKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVS 345
+ +GL + + ++D+ R G ++K+ MP + V
Sbjct: 1285 ANRQLVEEGLDHFERMKSVHNLEPQMKHYGCVVDILSRAGQLEKAVSFISEMPLAPDPVV 1344
Query: 346 WNVMI 350
W +++
Sbjct: 1345 WRILL 1349
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 93/351 (26%), Positives = 169/351 (48%), Gaps = 32/351 (9%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W + + Y+ + E ++LF + + D FV V KAC+ L +R G ++ ++
Sbjct: 448 WRAFLKAYSHGPFPLEALHLFK-HARQHLADDTFVFTFVLKACAGLGWHRAGAQLHALVV 506
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHC 151
FE +A V L+++++ + +F+EM +V+ N +I +A ++ +
Sbjct: 507 QKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMPVKNVVSWNVMITGFAGWGEVEYARL 566
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +++VSW ++ GY E LL M+ + P+ I++ V+ A + +
Sbjct: 567 LFDQMPCRNVVSWTGLIDGYTRACLYAEALTLL--RHMMAGGISPSEITVLAVIPAISNL 624
Query: 212 KGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQ-LSTRDVVVWNSI 259
G+ +G+ ++GY + I L G V S VF++ L R++V W SI
Sbjct: 625 GGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSI 684
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-TGSFVWN-- 316
IS F G V+AL+L ++ A +KPN +T +SV+ AC + QGL S V+
Sbjct: 685 ISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYN 744
Query: 317 ---------ALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMI---SVYG 354
+IDM GR G + ++ +I +P + N+ W +++ S YG
Sbjct: 745 IDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILLGCCSKYG 795
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 109/228 (47%), Gaps = 24/228 (10%)
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
+H F +I+ WN +L G A ++ + + + M+P+ ++ VL AC
Sbjct: 893 AHKVFKQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQ--EKGMKPDNLTFPFVLKAC 950
Query: 209 AQVKGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWN 257
A+ K G+ +H +V++ I+L ACG + C+ SVFN++ +DVV WN
Sbjct: 951 AKTCAPKEGEQMHNHVIKLGFLLDIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWN 1010
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------- 307
S+I + + ++ + L L + + V+ + VT+V V+ AC L
Sbjct: 1011 SLIGGYSQHNRLKEVLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIEHN 1070
Query: 308 -LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ ++ N LID Y R G +Q + K+F M KN V+ N MI+ Y
Sbjct: 1071 HIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMITAYA 1118
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 151/347 (43%), Gaps = 35/347 (10%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVG-----KD 86
+WTS++ + + G E + LF M G++P+ V ACS G
Sbjct: 680 SWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGGLVEQGLAFFKSM 739
Query: 87 VYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL 146
VY+Y I + + C+ +D+ + GR+ + E + + V I +Y
Sbjct: 740 VYEYNIDPEIKHFGCI----IDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILLGCCSKYG 795
Query: 147 KVSHCKFSKIKQKDLVSWN----AMLAG--YALGGFR--EEVTNLLDEMEMIQTDMQPNT 198
+V+ + + DL + A+L+ LG F E+ LLD+ ++++ +Q
Sbjct: 796 EVAMGERAIKMISDLERESGGDFAVLSNVLTELGRFSDAEQARKLLDQRKIVK--LQEAV 853
Query: 199 ISLSGVLAACAQVKGVKLGKAIHGYVLR-HHIHLSTACGFVICSCSVFNQLSTRDVVVWN 257
+ L A V G+ + V+R + +H S ++ + VF Q+ + +WN
Sbjct: 854 MEAVKKLHAHLVVSGLHNCQYAMSKVIRLYALHQSD----LVSAHKVFKQIESPTTFLWN 909
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS----- 312
+++ +S DA+ + +KP+ +T VL AC K A +G +
Sbjct: 910 TLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCAPKEGEQMHNHVIKL 969
Query: 313 ------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
FV N+LI +Y CGA+ +R +F M K++VSWN +I Y
Sbjct: 970 GFLLDIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSLIGGY 1016
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 79/188 (42%), Gaps = 31/188 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT ++ Y Y E + L M+ G+ P V A S L +G+ + Y
Sbjct: 578 SWTGLIDGYTRACLYAEALTLLRHMMAGGISPSEITVLAVIPAISNLGGILMGEMLNGYC 637
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+A V L+DL+ K G ++ + +F+EM
Sbjct: 638 EKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEM------------------------- 672
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+ +++LVSW ++++G+A+ G E L EM + ++PN I+ V+ AC+
Sbjct: 673 ----LDRRNLVSWTSIISGFAMHGLSVEALELFAEMR--RAGIKPNRITFLSVINACSHG 726
Query: 212 KGVKLGKA 219
V+ G A
Sbjct: 727 GLVEQGLA 734
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 110/424 (25%), Positives = 187/424 (44%), Gaps = 110/424 (25%)
Query: 6 QVHAHLIVCGVELCAFLGSQLL---------------EVF--------CNWTSMMGMYNV 42
Q+HA ++ G+ F S+L+ +VF W +++ Y
Sbjct: 53 QIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYAS 112
Query: 43 LGYYEEIVNLFYLMIDKGVR-PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+ + +F M+ + PD F P + KA SEL++ GK + +I +
Sbjct: 113 SSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVL------ 166
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ D + NSLI FYAKC L + + F I ++D+
Sbjct: 167 ------------------------LGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDV 202
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSWN+M+ + GG EE L EME +++PN I++ GVL+ACA+ + G+ +H
Sbjct: 203 VSWNSMITAFVQGGCPEEALELFQEMET--QNVKPNGITMVGVLSACAKKSDFEFGRWVH 260
Query: 222 GYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVV---------------- 254
Y+ R+ I S T CG V + +F+++ +D+V
Sbjct: 261 SYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYD 320
Query: 255 ---------------VWNSIISAFVRSGQVVDALDLLRDVIVANV-KPNTVTIVSVLPAC 298
WN++ISA+ + G+ +AL+L ++ ++ KP+ VT+VS L AC
Sbjct: 321 AAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSAC 380
Query: 299 LKLAAL-----------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
+L A+ QG+ + +LIDMY +CG +QK+ +F + K++ W+
Sbjct: 381 AQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWS 440
Query: 348 VMIS 351
MI+
Sbjct: 441 AMIA 444
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 169/344 (49%), Gaps = 26/344 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ + G EE + LF M + V+P+ V AC++ D+ G+ V+ Y+
Sbjct: 204 SWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYI 263
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSH 150
+ + + +LD++ KCG +E LF++M ++D + +++ YAK +
Sbjct: 264 ERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQ 323
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + +D+ +WNA+++ Y G +E L E+++ +T +P+ ++L L+ACAQ
Sbjct: 324 GIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKT-AKPDEVTLVSTLSACAQ 382
Query: 211 VKGVKLGKAIHGYVLRHHI----HLSTACGFVICSCS-------VFNQLSTRDVVVWNSI 259
+ + LG IH Y+ + + HL+T+ + C C VF+ + +DV VW+++
Sbjct: 383 LGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAM 442
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG---------- 309
I+ G DA+ L + VKPN VT ++L AC + + +G
Sbjct: 443 IAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYG 502
Query: 310 --TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMI 350
G + ++D+ GR G ++++ ++ MP S W ++
Sbjct: 503 VLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALL 546
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 119/225 (52%), Gaps = 25/225 (11%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI-QTDMQPNTISLSGVLAACAQV 211
F +I +L +WN ++ YA + +LL + M+ Q+ P+ + ++ A +++
Sbjct: 92 FDQIPHPNLYTWNTLIRAYASSSNPHQ--SLLIFLRMLHQSPDFPDKFTFPFLIKAASEL 149
Query: 212 KGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ + GKA HG ++L IH CG + VF + RDVV WNS+I
Sbjct: 150 EELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMI 209
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW----- 315
+AFV+ G +AL+L +++ NVKPN +T+V VL AC K + G S++
Sbjct: 210 TAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIG 269
Query: 316 ------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
NA++DMY +CG+++ ++++F MP K++VSW M+ Y
Sbjct: 270 ESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYA 314
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 33/191 (17%)
Query: 196 PNTISLSG--------VLAACAQVKGVKLGKAIHGYVLRHHIHLS--TACGFVICSC--- 242
PN+I+L+ L+ Q K K IH +LR + +A + +
Sbjct: 22 PNSITLNNDRYFANHPTLSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSP 81
Query: 243 --------SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDL-LRDVIVANVKPNTVTIVS 293
VF+Q+ ++ WN++I A+ S +L + LR + + P+ T
Sbjct: 82 FPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPF 141
Query: 294 VLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
++ A +L L G LG+ F+ N+LI Y +CG + ++FV +P ++
Sbjct: 142 LIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRD 201
Query: 343 LVSWNVMISVY 353
+VSWN MI+ +
Sbjct: 202 VVSWNSMITAF 212
>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
Length = 820
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 113/396 (28%), Positives = 179/396 (45%), Gaps = 75/396 (18%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
+LG VHA + G + AF+G+ L++ + +WT M+ Y
Sbjct: 162 KLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACY 221
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+EE + LF M G +P++F V KAC L+ + VGK V+ +
Sbjct: 222 VENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEEL 281
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
V L+DL+IK G ++ +FEEM +D D
Sbjct: 282 FVGVELIDLYIKSGDVDDALQVFEEMPKD------------------------------D 311
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
++ W+ M+A YA EE + M + + PN +L+ +L ACA + ++LG I
Sbjct: 312 VIPWSFMIARYAQSEQSEEAIEMFCRMR--RGLVLPNQFTLASLLQACASLVDLQLGNQI 369
Query: 221 HGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H +V++ ++ +S A CG + S +F++ V WN++I +V++G
Sbjct: 370 HCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNG 429
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNAL 318
AL L +D++ V+ VT SVL AC +AAL G + V NAL
Sbjct: 430 EKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNAL 489
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
IDMY +CG I+ +R +F ++ + VSWN MIS Y
Sbjct: 490 IDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYS 525
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 146/344 (42%), Gaps = 56/344 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W+ M+ Y EE + +F M V P+ F + +AC+ L D ++G ++ +++
Sbjct: 315 WSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVV 374
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ +D + V+N+L+D YAKC ++ S
Sbjct: 375 KVG------------------------------LDMNVFVSNALMDMYAKCGRMENSLQL 404
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
FS+ VSWN ++ GY G E+ L +M ++ +Q ++ S VL ACA +
Sbjct: 405 FSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDM--LECQVQGTEVTYSSVLRACAGIA 462
Query: 213 GVKLGKAIHGYVLRH-----------HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ G IH ++ I + CG + + VF+ L D V WN++IS
Sbjct: 463 ALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMIS 522
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGT-GSFV------ 314
+ G +AL ++ KP+ VT V +L AC L +G S V
Sbjct: 523 GYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIE 582
Query: 315 -----WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ ++ + GR G + K+ K+ +P +++ W ++S
Sbjct: 583 PCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSA 626
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 108/248 (43%), Gaps = 24/248 (9%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D NN L++FY K L + F ++ ++ VS+ ++ GY+ E L ++
Sbjct: 78 DLFANNILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQ 137
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH-----------GYVLRHHIHLSTACGF 237
++ P S VL + KLG ++H +V I + CG+
Sbjct: 138 GEGHELNP--FVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGY 195
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
C+ VF+ + +D+V W +++ +V + ++L L + + KPN T SVL A
Sbjct: 196 AECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKA 255
Query: 298 CLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
C+ L G FV LID+Y + G + + ++F MP +++ W
Sbjct: 256 CVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPW 315
Query: 347 NVMISVYG 354
+ MI+ Y
Sbjct: 316 SFMIARYA 323
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 105/240 (43%), Gaps = 53/240 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++LG Q+H H++ G+++ F+ + L++++ +W +++
Sbjct: 363 LQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVG 422
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G E+ + LF M++ V+ V +AC+ + G ++ + ++ N
Sbjct: 423 YVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKN 482
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V L+D++ KCG +K + F +++
Sbjct: 483 TVVGNALIDMYAKCGN------------------------------IKDARLVFDMLREH 512
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D VSWNAM++GY++ G E + M++T+ +P+ ++ G+L+AC+ + G+A
Sbjct: 513 DQVSWNAMISGYSVHGLYGEALKTFE--SMLETECKPDKVTFVGILSACSNAGLLDRGQA 570
>gi|357167761|ref|XP_003581320.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Brachypodium distachyon]
Length = 773
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 100/346 (28%), Positives = 158/346 (45%), Gaps = 53/346 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT ++G Y G E V LF M G++PD + V + GK + +
Sbjct: 289 SWTGLIGAYCRRGLAREAVELFQEMEQSGLQPDEVLVSCVLSGLGSSANVNRGKAFHAVI 348
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I F L+ NSLI Y K + V+
Sbjct: 349 IRRNF------------------------------GDSVLIANSLISMYGKFELVDVAGT 378
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNTISLSGVLAACAQ 210
F + Q+D SW+ M+AGY G + L +M+ D + SL +++C++
Sbjct: 379 VFGMLHQRDDESWSLMVAGYCKAGLDVKCLELYRQMQCRDHDEFLCDITSLVSAISSCSR 438
Query: 211 VKGVKLGKAIHGYVLR----------HHIHLSTACGFVICSCSVFNQLS-TRDVVVWNSI 259
+ ++LG+++H Y ++ I + CG +C +F RDVV WN++
Sbjct: 439 LGRLRLGQSVHCYSIKCLLDENSITNSLIGMYGRCGNFELACKIFAVAKLRRDVVTWNAL 498
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN--- 316
IS++ G+ DAL L ++ +VKPN+ T+++V+ AC LAAL G S+V N
Sbjct: 499 ISSYSHVGRSNDALSLYGQMLTEDVKPNSSTLITVISACANLAALEHGELLHSYVKNMGL 558
Query: 317 --------ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
AL+DMY +CG + +R IF M +++V+WNVMIS YG
Sbjct: 559 ESDVSISTALVDMYTKCGQLGTARGIFDSMLQRDVVTWNVMISGYG 604
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/350 (24%), Positives = 163/350 (46%), Gaps = 64/350 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCP-----KVYKACSELKDYRVGKD 86
+W+ M+ Y G + + L+ M + D F+C +CS L R+G+
Sbjct: 390 SWSLMVAGYCKAGLDVKCLELYRQMQCR--DHDEFLCDITSLVSAISSCSRLGRLRLGQS 447
Query: 87 VYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL 146
V+ Y I + N+ + NSLI Y +C
Sbjct: 448 VHCYSIKCLLDENS-------------------------------ITNSLIGMYGRCGNF 476
Query: 147 KVSHCKFSKIK-QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
+++ F+ K ++D+V+WNA+++ Y+ G + +L +M + D++PN+ +L V+
Sbjct: 477 ELACKIFAVAKLRRDVVTWNALISSYSHVGRSNDALSLYGQM--LTEDVKPNSSTLITVI 534
Query: 206 AACAQVKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVV 254
+ACA + ++ G+ +H YV L + +STA CG + + +F+ + RDVV
Sbjct: 535 SACANLAALEHGELLHSYVKNMGLESDVSISTALVDMYTKCGQLGTARGIFDSMLQRDVV 594
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----LGT 310
WN +IS + G+ AL L ++ ++KPN++T +++L AC + +G +
Sbjct: 595 TWNVMISGYGMHGEANQALKLFSEMEAGSIKPNSLTFLAILSACCHAGLVDEGRKLFIRM 654
Query: 311 GSFV-------WNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
G + + ++D+ G+ G +Q++ + + MP K + W ++S
Sbjct: 655 GGYRLEPNLKHYACMVDLLGKSGLLQEAEDLVLAMPIKPDGGVWGTLLSA 704
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/363 (23%), Positives = 160/363 (44%), Gaps = 52/363 (14%)
Query: 15 GVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKA 74
G AF S + F W S++ ++ ++ ++ M G RP F P A
Sbjct: 64 GFATLAFSASPCPDTFL-WNSLLRSHHCASDFDSALSAHRRMRASGARPSRFTAPLAASA 122
Query: 75 CSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNN 134
+EL VG V+ Y S+KF GL D V++
Sbjct: 123 AAELAALPVGTSVHSY--SVKF------------------------GLLAG-DGSVAVSS 155
Query: 135 SLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD- 193
SL+ YA+C L + F ++ ++D+V+W A+++G G + L +M + D
Sbjct: 156 SLVYMYARCGSLGDAVKLFDEMVERDVVAWTAVVSGCVRNGECGKGICYLVQMIRLAGDS 215
Query: 194 -MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVICS 241
+PN+ ++ L AC + + G+ +HGY ++ I + + C +
Sbjct: 216 GARPNSRTMESGLEACGVLGELSAGRCLHGYAVKEGIRDCALVVSALFSMYSKCDMTEDA 275
Query: 242 CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
C +F +L+ +DVV W +I A+ R G +A++L +++ + ++P+ V + VL
Sbjct: 276 CILFPELTEKDVVSWTGLIGAYCRRGLAREAVELFQEMEQSGLQPDEVLVSCVLSGLGSS 335
Query: 302 AALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
A + +G G + N+LI MYG+ + + +F ++ ++ SW++M+
Sbjct: 336 ANVNRGKAFHAVIIRRNFGDSVLIANSLISMYGKFELVDVAGTVFGMLHQRDDESWSLMV 395
Query: 351 SVY 353
+ Y
Sbjct: 396 AGY 398
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 97/213 (45%), Gaps = 36/213 (16%)
Query: 21 FLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD 80
F ++L W +++ Y+ +G + ++L+ M+ + V+P+ V AC+ L
Sbjct: 483 FAVAKLRRDVVTWNALISSYSHVGRSNDALSLYGQMLTEDVKPNSSTLITVISACANLAA 542
Query: 81 YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFY 140
G+ ++ Y+ ++ E + + L+D++ KCG++ G+F+ M
Sbjct: 543 LEHGELLHSYVKNMGLESDVSISTALVDMYTKCGQLGTARGIFDSM-------------- 588
Query: 141 AKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTIS 200
Q+D+V+WN M++GY + G + L EME ++PN+++
Sbjct: 589 ----------------LQRDVVTWNVMISGYGMHGEANQALKLFSEME--AGSIKPNSLT 630
Query: 201 LSGVLAACAQV----KGVKLGKAIHGYVLRHHI 229
+L+AC +G KL + GY L ++
Sbjct: 631 FLAILSACCHAGLVDEGRKLFIRMGGYRLEPNL 663
>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Cucumis sativus]
Length = 788
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 106/396 (26%), Positives = 183/396 (46%), Gaps = 76/396 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMY 40
+G+ +HAH IV GV F+GS +++++ W +M+ +
Sbjct: 130 RVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGF 189
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+ Y+E+ + +F M+D G+ D V A +EL++YR+G + +
Sbjct: 190 SRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDV 249
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
V L+ L+ KCG+ K R L F +I Q D
Sbjct: 250 YVLTGLISLYSKCGKS------------------------CKGRIL------FDQIDQPD 279
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
L+S+NAM++GY E L E++ + + N+ +L G++ ++L + I
Sbjct: 280 LISYNAMISGYTFNHETESAVTLF--RELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLI 337
Query: 221 HGYVLRHHIHL----STACGFVICSCS-------VFNQLSTRDVVVWNSIISAFVRSGQV 269
L+ I L STA V C + +F++ + + WN++IS + ++G
Sbjct: 338 QNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLT 397
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNAL 318
A+ L ++ ++ + PN VT+ S+L AC +L AL G L + +V AL
Sbjct: 398 DRAISLFQE-MMPQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTAL 456
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+DMY +CG+I ++R++F LM KN+V+WN MI+ YG
Sbjct: 457 VDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYG 492
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/322 (25%), Positives = 147/322 (45%), Gaps = 54/322 (16%)
Query: 54 YLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKC 113
+L +RPD+F A S L+D RVG ++ + I N V ++DL+ K
Sbjct: 102 HLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKF 161
Query: 114 GRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYAL 173
R E+ +F+ M ++D V WN M++G++
Sbjct: 162 TRAELARKVFDVM------------------------------PERDTVLWNTMISGFSR 191
Query: 174 GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG---------KAIHG-- 222
+ E+ + ++M+ + ++ +L+ VL A A+++ +LG K +H
Sbjct: 192 NSYFEDSIRVF--VDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDV 249
Query: 223 YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
YVL I L + CG +F+Q+ D++ +N++IS + + + A+ L R+++ +
Sbjct: 250 YVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLAS 309
Query: 283 NVKPNTVTIVSVLPAC-----LKLAALPQGLGTG------SFVWNALIDMYGRCGAIQKS 331
+ N+ T+V ++P L+L+ L Q L V AL +Y R +Q +
Sbjct: 310 GQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFA 369
Query: 332 RKIFVLMPHKNLVSWNVMISVY 353
R++F P K+L SWN MIS Y
Sbjct: 370 RQLFDESPEKSLASWNAMISGY 391
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 116/231 (50%), Gaps = 26/231 (11%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V+ +L Y + ++ + F + +K L SWNAM++GY G + +L EM
Sbjct: 352 VSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEM---M 408
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVIC 240
+ PN ++++ +L+ACAQ+ + +GK +HG + L ++++STA CG ++
Sbjct: 409 PQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVE 468
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ +F+ + ++VV WN++I+ + G +AL L +++ + + P VT +S+L AC
Sbjct: 469 ARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSH 528
Query: 301 LAALPQ------------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+ + G S + ++D+ GR G + + + MP
Sbjct: 529 SGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMP 579
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 113/230 (49%), Gaps = 25/230 (10%)
Query: 148 VSHCK--FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
V+H + F+K+ + DL +N ++ G++ G + L + +T+++P+ + + +
Sbjct: 62 VAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRK-KTNLRPDNFTYAFAI 120
Query: 206 AACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSC-----------SVFNQLSTRDVV 254
+A ++++ ++G +H + + + + G I VF+ + RD V
Sbjct: 121 SAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTV 180
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------A 303
+WN++IS F R+ D++ + D++ + ++ T+ +VL A +L A
Sbjct: 181 LWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLA 240
Query: 304 LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+GL + +V LI +Y +CG K R +F + +L+S+N MIS Y
Sbjct: 241 SKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGY 290
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 33/191 (17%)
Query: 30 FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
+W +M+ Y G + ++LF M+ + + P+ + AC++L +GK V+
Sbjct: 381 LASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHG 439
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
+ S + E N V+ +L+D YAKC + +
Sbjct: 440 LIKSERLESNV------------------------------YVSTALVDMYAKCGSIVEA 469
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + K++V+WNAM+ GY L G +E L EM+Q+ + P ++ +L AC+
Sbjct: 470 RQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLF--YEMLQSGIPPTGVTFLSILYACS 527
Query: 210 QVKGVKLGKAI 220
V G I
Sbjct: 528 HSGLVSEGNEI 538
>gi|255568940|ref|XP_002525440.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535253|gb|EEF36930.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 878
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/355 (26%), Positives = 159/355 (44%), Gaps = 54/355 (15%)
Query: 21 FLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD 80
F + E W M+ Y L + +F M +G+ P+ F P + + C+
Sbjct: 448 FFATTQTENVVLWNVMLVAYGQLDNLSKSFCIFRQMQIEGLIPNQFTYPSILRTCTSFGA 507
Query: 81 YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFY 140
+G+ ++ I FE N V L+D++ K G+++I G+ ++++
Sbjct: 508 LDLGEQIHSQAIKTGFEFNVYVCSVLIDMYAKLGKLDIARGILRRLNEE----------- 556
Query: 141 AKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTIS 200
D+VSW A++AGY E NL D EM+ +Q + I
Sbjct: 557 -------------------DVVSWTALIAGYTQHDLFTEALNLFD--EMLNRGIQSDNIG 595
Query: 201 LSGVLAACAQVKGVKLGKAIHG--YVLRHHIHLSTA---------CGFVICSCSVFNQLS 249
S ++ACA ++ + G+ IH Y+ + LS CG + + F ++
Sbjct: 596 FSSAISACAGIQALSQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRIQEANLAFEKID 655
Query: 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-- 307
+D + WN+++S F +SG +AL + + AN+K + T S + A +A + QG
Sbjct: 656 AKDSISWNALMSGFAQSGYCEEALKIFAQMTRANIKASLFTFGSAVSAAANMANIKQGKQ 715
Query: 308 -----LGTGS----FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ TG V NALI +Y +CG I +++ F +P KN +SWN MI+ Y
Sbjct: 716 IHAMIMKTGFDSEIEVSNALITLYAKCGCIDGAKREFFEIPEKNEISWNAMITGY 770
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 151/329 (45%), Gaps = 53/329 (16%)
Query: 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL 107
++ LF M+++ V P+ V +A Y G + Y+ I + + R L
Sbjct: 171 RVLGLFAQMVEENVNPNEVTVASVLRA------YGSGNVAFYYVEQIH---ASIISRGLG 221
Query: 108 DLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAM 167
I C N LID YAK +++ + F ++ KD VSW A+
Sbjct: 222 TSSIAC--------------------NPLIDLYAKNGFIRSARKVFDELCMKDSVSWVAV 261
Query: 168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG----- 222
++ Y+ GF EE L EM + + + P S VL+ACA+++ +G+ +H
Sbjct: 262 ISSYSQNGFGEEAIRLFCEMHI--SGLSPTPYVFSSVLSACAKIELFDIGEQLHALVFKC 319
Query: 223 ------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL 276
YV + L + G I + VF+++ +D V +NS+IS + G AL+L
Sbjct: 320 GFFLETYVCNALVTLYSRLGNFISAQQVFSKIKCKDEVSYNSLISGLSQQGCSDRALELF 379
Query: 277 RDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA-----------LIDMYGRC 325
+ + + ++KP+ VT+ S+L AC + +L +G S+ A L+D+Y +C
Sbjct: 380 KKMQLDHLKPDCVTVASLLSACASIKSLSKGEQLHSYAIKAGMCLDIIIEGSLLDLYVKC 439
Query: 326 GAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
I + K F +N+V WNVM+ YG
Sbjct: 440 SDITTAHKFFATTQTENVVLWNVMLVAYG 468
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/341 (22%), Positives = 156/341 (45%), Gaps = 64/341 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++LG Q+H+ I G E ++ S L++++ +WT+++
Sbjct: 508 LDLGEQIHSQAIKTGFEFNVYVCSVLIDMYAKLGKLDIARGILRRLNEEDVVSWTALIAG 567
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y + E +NLF M+++G++ D+ AC+ ++ G+ ++
Sbjct: 568 YTQHDLFTEALNLFDEMLNRGIQSDNIGFSSAISACAGIQALSQGQQIH----------- 616
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
SG E D + N+L+ YA+C ++ ++ F KI K
Sbjct: 617 ---------------AQSYISGYSE----DLSIGNALVSLYARCGRIQEANLAFEKIDAK 657
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D +SWNA+++G+A G+ EE + +M + +++ + + ++A A + +K GK
Sbjct: 658 DSISWNALMSGFAQSGYCEEALKIF--AQMTRANIKASLFTFGSAVSAAANMANIKQGKQ 715
Query: 220 IHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH +++ I +S A CG + + F ++ ++ + WN++I+ + + G
Sbjct: 716 IHAMIMKTGFDSEIEVSNALITLYAKCGCIDGAKREFFEIPEKNEISWNAMITGYSQHGC 775
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG 309
++A++L + + KPN VT V V+ AC + + +GL
Sbjct: 776 GIEAVNLFQKMKQVGAKPNHVTFVGVISACSHVGLVNEGLA 816
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/397 (20%), Positives = 165/397 (41%), Gaps = 75/397 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++G Q+HA + CG L ++ + L+ ++ ++ S++
Sbjct: 306 FDIGEQLHALVFKCGFFLETYVCNALVTLYSRLGNFISAQQVFSKIKCKDEVSYNSLISG 365
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ G + + LF M ++PD + AC+ +K G+ ++ Y I +
Sbjct: 366 LSQQGCSDRALELFKKMQLDHLKPDCVTVASLLSACASIKSLSKGEQLHSYAIKAGMCLD 425
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
++ LLDL++KC +IT+ +H F+ + +
Sbjct: 426 IIIEGSLLDLYVKCS--DITT----------------------------AHKFFATTQTE 455
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
++V WN ML Y + + +M++ + PN + +L C + LG+
Sbjct: 456 NVVLWNVMLVAYGQLDNLSKSFCIFRQMQI--EGLIPNQFTYPSILRTCTSFGALDLGEQ 513
Query: 220 IHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH YV I + G + + + +L+ DVV W ++I+ + +
Sbjct: 514 IHSQAIKTGFEFNVYVCSVLIDMYAKLGKLDIARGILRRLNEEDVVSWTALIAGYTQHDL 573
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG--LGTGSF---------VWNA 317
+AL+L +++ ++ + + S + AC + AL QG + S+ + NA
Sbjct: 574 FTEALNLFDEMLNRGIQSDNIGFSSAISACAGIQALSQGQQIHAQSYISGYSEDLSIGNA 633
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L+ +Y RCG IQ++ F + K+ +SWN ++S +
Sbjct: 634 LVSLYARCGRIQEANLAFEKIDAKDSISWNALMSGFA 670
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 117/249 (46%), Gaps = 25/249 (10%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
D++ ++ + LI+FY L F + + L++WN +L+G V L
Sbjct: 118 FDKESVLCDKLIEFYFAVGDLNSVVKVFDDMPSRSLMTWNKVLSGLVANKTSNRVLGLF- 176
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVK-GVKLGKAIHGYVLRHHIHLST-AC-------- 235
+M++ ++ PN ++++ VL A + IH ++ + S+ AC
Sbjct: 177 -AQMVEENVNPNEVTVASVLRAYGSGNVAFYYVEQIHASIISRGLGTSSIACNPLIDLYA 235
Query: 236 --GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
GF+ + VF++L +D V W ++IS++ ++G +A+ L ++ ++ + P S
Sbjct: 236 KNGFIRSARKVFDELCMKDSVSWVAVISSYSQNGFGEEAIRLFCEMHISGLSPTPYVFSS 295
Query: 294 VLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
VL AC K+ G ++V NAL+ +Y R G ++++F + K+
Sbjct: 296 VLSACAKIELFDIGEQLHALVFKCGFFLETYVCNALVTLYSRLGNFISAQQVFSKIKCKD 355
Query: 343 LVSWNVMIS 351
VS+N +IS
Sbjct: 356 EVSYNSLIS 364
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 87/197 (44%), Gaps = 32/197 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W ++M + GY EE + +F M ++ F A + + + + GK ++ +
Sbjct: 661 SWNALMSGFAQSGYCEEALKIFAQMTRANIKASLFTFGSAVSAAANMANIKQGKQIHAMI 720
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F D + V+N+LI YAKC + +
Sbjct: 721 MKTGF------------------------------DSEIEVSNALITLYAKCGCIDGAKR 750
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+F +I +K+ +SWNAM+ GY+ G E NL +M+ Q +PN ++ GV++AC+ V
Sbjct: 751 EFFEIPEKNEISWNAMITGYSQHGCGIEAVNLFQKMK--QVGAKPNHVTFVGVISACSHV 808
Query: 212 KGVKLGKAIHGYVLRHH 228
V G A + + H
Sbjct: 809 GLVNEGLAYFESMSKEH 825
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 12/122 (9%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC----- 298
VF+ + +R ++ WN ++S V + L L ++ NV PN VT+ SVL A
Sbjct: 144 VFDDMPSRSLMTWNKVLSGLVANKTSNRVLGLFAQMVEENVNPNEVTVASVLRAYGSGNV 203
Query: 299 -------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ + + +GLGT S N LID+Y + G I+ +RK+F + K+ VSW +IS
Sbjct: 204 AFYYVEQIHASIISRGLGTSSIACNPLIDLYAKNGFIRSARKVFDELCMKDSVSWVAVIS 263
Query: 352 VY 353
Y
Sbjct: 264 SY 265
>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
Length = 894
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 97/393 (24%), Positives = 186/393 (47%), Gaps = 48/393 (12%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G Q+H+H+I G L F+ + L+ ++ +W S++G Y+
Sbjct: 429 GEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQ 488
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
++E++ LF LM + V+ D KV AC+ L D+ + + Y+ E + +
Sbjct: 489 RNRFKEVLALFELMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYL 548
Query: 103 KRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
L+D + + G+++ +F +M D++ + N++I YAK L + F +I KDL
Sbjct: 549 GNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDL 608
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
+SW++M+ Y+ + L +M+ + ++P+ + ++ VL+ACA + + LGK IH
Sbjct: 609 ISWSSMICAYSQASHFSDSLELFRQMQ--RAKVKPDAVVIASVLSACAHLGALDLGKWIH 666
Query: 222 GYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
YV R++I T CG + + VF ++ +D + WNSII +G
Sbjct: 667 DYVRRNNIKTDTIMENSLIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILGLANNGFED 726
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNAL 318
+AL++ ++ +PN VT + VL AC + +GL + + +
Sbjct: 727 EALNIFYSMLTEGPRPNEVTFLGVLIACANKRLVQEGLDHFERMKTVHNLEPQMKHYGCV 786
Query: 319 IDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ + R G ++K++ MP + V W +++
Sbjct: 787 VGILSRAGQLEKAKNFINEMPLAPDPVVWRILL 819
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 107/228 (46%), Gaps = 24/228 (10%)
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
+H F +I+ WN +L G A ++ + + + M+P+ ++ VL AC
Sbjct: 363 AHKVFEQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQ--EKGMKPDNMTFPFVLKAC 420
Query: 209 AQVKGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWN 257
A+ K G+ +H +V++ IHL ACG ++C+ S+F+++ +DVV WN
Sbjct: 421 AKTYAPKEGEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWN 480
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------- 307
S+I + + + + L L + V+ + VT+V V+ AC L
Sbjct: 481 SLIGGYSQRNRFKEVLALFELMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERN 540
Query: 308 -LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ ++ N LID Y R G +Q + K+F M KN V+ N MI Y
Sbjct: 541 HIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMIHAYA 588
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 121/249 (48%), Gaps = 30/249 (12%)
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
N +I +A ++ + F ++ +++VSW ++ GY E L M+
Sbjct: 10 NVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALF--RHMMAGG 67
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSC 242
+ P+ I++ V+ A + + G+ +G+ +HGY ++ I L G V S
Sbjct: 68 ISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSL 127
Query: 243 SVFNQ-LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
VF++ L R++V W SIIS F G V+AL+L ++ A ++PN +T +SV+ AC
Sbjct: 128 KVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINACSHG 187
Query: 302 AALPQGLG-TGSFVWN-----------ALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNV 348
+ QGL S V+ +IDM GR G + ++ +I +P + N++ W +
Sbjct: 188 GLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVNVIVWRI 247
Query: 349 MI---SVYG 354
++ S YG
Sbjct: 248 LLGCCSKYG 256
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 118/254 (46%), Gaps = 45/254 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W+SM+ Y+ ++ + + LF M V+PD V V AC+ L +GK ++DY
Sbjct: 610 SWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDY- 668
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
V+R + D ++ NSLID +AKC ++ +
Sbjct: 669 ----------VRR-------------------NNIKTDTIMENSLIDMFAKCGCMQEALQ 699
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+++++KD +SWN+++ G A GF +E N+ M+ +PN ++ GVL ACA
Sbjct: 700 VFTEMEEKDTLSWNSIILGLANNGFEDEALNIF--YSMLTEGPRPNEVTFLGVLIACANK 757
Query: 212 KGVKLG-------KAIHGY--VLRHH---IHLSTACGFVICSCSVFNQLS-TRDVVVWNS 258
+ V+ G K +H ++H+ + + + G + + + N++ D VVW
Sbjct: 758 RLVQEGLDHFERMKTVHNLEPQMKHYGCVVGILSRAGQLEKAKNFINEMPLAPDPVVWRI 817
Query: 259 IISAFVRSGQVVDA 272
++ A G V A
Sbjct: 818 LLGACKTHGNVAVA 831
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 89/360 (24%), Positives = 152/360 (42%), Gaps = 52/360 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVG-----KD 86
+WTS++ + + G E + LF M G+RP+ V ACS G
Sbjct: 141 SWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINACSHGGLVEQGLAFFKSM 200
Query: 87 VYDYMISIKFEGNACVKRPLLDLFIKCGRM----EITSGLFEEMDQDFLVNNSLIDFYAK 142
VY+Y I + + C+ +D+ + GR+ +I GL E+ + +V L+ +K
Sbjct: 201 VYEYNIDPEIKHFGCI----IDMLGRAGRLCEAEQIIEGLPVEV--NVIVWRILLGCCSK 254
Query: 143 CRYLKVSHCKFSKIKQKDLVSWN--AMLAGY--ALGGFR--EEVTNLLDEMEMIQTDMQP 196
+++ I + S A+L+ LG F E+ LLDE ++++
Sbjct: 255 YGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQARKLLDERKIVKVPGLA 314
Query: 197 NTISLSGVLAACAQ-------VKGV-----KLGKAIHGYVLRHHIHLSTACGFVICSCSV 244
++ S V+ + V G+ + K I Y L+ ++ + V
Sbjct: 315 LVVTRSFVMMEAVKKLHAHLVVSGLHNCQYAMSKVIRSYALQQ--------SDLVFAHKV 366
Query: 245 FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL 304
F Q+ + +WN+++ +S DA+ + +KP+ +T VL AC K A
Sbjct: 367 FEQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAP 426
Query: 305 PQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+G S FV N+LI +Y CG + +R IF M K++VSWN +I Y
Sbjct: 427 KEGEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGY 486
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 31/188 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT ++ Y Y E V LF M+ G+ P V A S L +G+ ++ Y
Sbjct: 39 SWTGLIDGYTRACLYAEAVALFRHMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYC 98
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ +A V L+DL+ K G ++ + +F+EM
Sbjct: 99 VKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEM------------------------- 133
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+ +++LVSW ++++G+A+ G E L EM + ++PN I+ V+ AC+
Sbjct: 134 ----LDRRNLVSWTSIISGFAMHGLSVEALELFAEMR--RAGIRPNRITFLSVINACSHG 187
Query: 212 KGVKLGKA 219
V+ G A
Sbjct: 188 GLVEQGLA 195
>gi|115439575|ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza sativa Japonica Group]
gi|125571815|gb|EAZ13330.1| hypothetical protein OsJ_03251 [Oryza sativa Japonica Group]
Length = 608
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 171/338 (50%), Gaps = 24/338 (7%)
Query: 35 SMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI 94
+++ + L ++E+++ F + +G P V K+C+ L R GK V+ + I
Sbjct: 55 TLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAILAASRQGKQVHCHAIVR 114
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKF 153
G+ V+ L+D + K G M+ +F+EM +D + N LI Y+K + + F
Sbjct: 115 GLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLF 174
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG 213
+ ++ SWN+M+A YA GG +E L M+ +PN I+++ + + CA+
Sbjct: 175 DGMVRRTSASWNSMIACYAHGGEYQEALRLF--RRMLSEGARPNAITIATMFSICAKTGD 232
Query: 214 VKLGKAIHGYVLRHH-----IHLSTACGFVICSC-----SVFNQLSTRDVVVWNSIISAF 263
++ GK + +H + +V C F+++ RDVV W+++I+ +
Sbjct: 233 LETGKWARSLIAEQDLQNMIVHTALMEMYVKCRAIDEARREFDRMQQRDVVAWSTMIAGY 292
Query: 264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLGTGS 312
++G+ ++L+L + + KPN VT+V VL AC +L + Q L S
Sbjct: 293 AQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTS 352
Query: 313 FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
++ +ALIDMY +CG + ++R +F M HK +++WN M+
Sbjct: 353 YLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMM 390
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 163/349 (46%), Gaps = 65/349 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y G Y+E + LF M+ +G RP+ ++ C++ D GK
Sbjct: 184 SWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGK------ 237
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSH 150
L E D Q+ +V+ +L++ Y KCR + +
Sbjct: 238 --------------------------WARSLIAEQDLQNMIVHTALMEMYVKCRAIDEAR 271
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+F +++Q+D+V+W+ M+AGYA G E L + M+ T +PN ++L GVL+ACAQ
Sbjct: 272 REFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKA--TSCKPNEVTLVGVLSACAQ 329
Query: 211 VKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSI 259
+ +LG I +V ++ L+ T CG V + SVFN++ + V+ WNS+
Sbjct: 330 LGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSM 389
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN--- 316
+ +G DA+ L +++ +V+PN +T V++L AC + QG+ SF
Sbjct: 390 MRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGM---SFFKEMKT 446
Query: 317 ------------ALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
++D+ + G ++++ K M N V W+ ++S
Sbjct: 447 IHHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSA 495
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
+ G V+ + +F+ + R WNS+I+ + G+ +AL L R ++ +PN +TI
Sbjct: 162 SKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIA 221
Query: 293 SVLPACLKLAALPQGLGTGSF----------VWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
++ C K L G S V AL++MY +C AI ++R+ F M ++
Sbjct: 222 TMFSICAKTGDLETGKWARSLIAEQDLQNMIVHTALMEMYVKCRAIDEARREFDRMQQRD 281
Query: 343 LVSWNVMISVYG 354
+V+W+ MI+ Y
Sbjct: 282 VVAWSTMIAGYA 293
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 30/142 (21%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
ELG Q+ +H+ + L ++LGS L++++ W SMM
Sbjct: 334 ELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGL 393
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM-----ISIK 95
+ G+ ++ + L+ M ++ V+P+ + AC+ G + M +S +
Sbjct: 394 ALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQ 453
Query: 96 FEGNACVKRPLLDLFIKCGRME 117
E AC+ +DL K GR+
Sbjct: 454 VEHCACI----VDLLCKSGRLR 471
>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 614
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 92/330 (27%), Positives = 156/330 (47%), Gaps = 55/330 (16%)
Query: 46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP 105
Y ++LF+ M+ + PD+F P + +C+ L +AC
Sbjct: 103 YPLALSLFHRMMSLSLTPDNFTFPFFFLSCANLASL----------------SHACAAHS 146
Query: 106 LLDLFIKCGRMEITSGLFE-EMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
LL F+ + D +SLI YA+C + + F +I +D VSW
Sbjct: 147 LL---------------FKLALHSDPHTAHSLITAYARCGLVASARKVFDEIPHRDSVSW 191
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
N+M+AGYA G E + EM + +P+ +SL +L AC ++ ++LG+ + G+V
Sbjct: 192 NSMIAGYAKAGCAREAVEVFREMGR-RDGFEPDEMSLVSLLGACGELGDLELGRWVEGFV 250
Query: 225 LRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
+ + L++ CG + + +F+ ++ RDV+ WN++IS + ++G +A+
Sbjct: 251 VERGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVITWNAVISGYAQNGMADEAI 310
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWNALIDMY 322
L + V N +T+ +VL AC + AL +G FV ALIDMY
Sbjct: 311 LLFHGMKEDCVTANKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMY 370
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+ G++ ++++F MP KN SWN MIS
Sbjct: 371 AKSGSLDNAQRVFKDMPQKNEASWNAMISA 400
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 88/367 (23%), Positives = 155/367 (42%), Gaps = 67/367 (18%)
Query: 9 AHLIVCGVELCAFLGSQLLEVF--------CNWTSMMGMYNVLGYYEEIVNLFYLMIDK- 59
AH ++ C + S +VF +W SM+ Y G E V +F M +
Sbjct: 160 AHSLITAYARCGLVASAR-KVFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRD 218
Query: 60 GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEIT 119
G PD + AC EL D +G+ V +++
Sbjct: 219 GFEPDEMSLVSLLGACGELGDLELGRWVEGFVVE-------------------------- 252
Query: 120 SGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREE 179
M + + ++LI YAKC L+ + F + +D+++WNA+++GYA G +E
Sbjct: 253 ----RGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVITWNAVISGYAQNGMADE 308
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA- 234
L M+ + + N I+L+ VL+ACA + + LGK I Y +H I ++TA
Sbjct: 309 AILLFHGMK--EDCVTANKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATAL 366
Query: 235 ------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV--ANVKP 286
G + + VF + ++ WN++ISA G+ +AL L + + +P
Sbjct: 367 IDMYAKSGSLDNAQRVFKDMPQKNEASWNAMISALAAHGKAKEALSLFQHMSDEGGGARP 426
Query: 287 NTVTIVSVLPACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKI 334
N +T V +L AC+ + +G + ++ ++D+ R G + ++ +
Sbjct: 427 NDITFVGLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDL 486
Query: 335 FVLMPHK 341
MP K
Sbjct: 487 IRKMPEK 493
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 100/190 (52%), Gaps = 23/190 (12%)
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH--------LSTA---CG 236
M+ + P+ + +CA + + A H + + +H L TA CG
Sbjct: 112 RMMSLSLTPDNFTFPFFFLSCANLASLSHACAAHSLLFKLALHSDPHTAHSLITAYARCG 171
Query: 237 FVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVL 295
V + VF+++ RD V WNS+I+ + ++G +A+++ R++ + +P+ +++VS+L
Sbjct: 172 LVASARKVFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLL 231
Query: 296 PACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLV 344
AC +L L +G+ S++ +ALI MY +CG ++ +R+IF M ++++
Sbjct: 232 GACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVI 291
Query: 345 SWNVMISVYG 354
+WN +IS Y
Sbjct: 292 TWNAVISGYA 301
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 126/319 (39%), Gaps = 73/319 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ELG V ++ G+ L +++GS L+ ++ W +++
Sbjct: 240 LELGRWVEGFVVERGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVITWNAVISG 299
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G +E + LF+ M + V + V AC+ + +GK + +Y F+
Sbjct: 300 YAQNGMADEAILLFHGMKEDCVTANKITLTAVLSACATIGALDLGKQIDEYASQRGFQ-- 357
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D V +LID YAK L + F + QK
Sbjct: 358 ----------------------------HDIFVATALIDMYAKSGSLDNAQRVFKDMPQK 389
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+ SWNAM++ A G +E +L M +PN I+ G+L+AC V G
Sbjct: 390 NEASWNAMISALAAHGKAKEALSLFQHMSDEGGGARPNDITFVGLLSAC-----VHAGLV 444
Query: 220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
GY R +ST G V + ++ ++ R+G + +A DL+R +
Sbjct: 445 DEGY--RLFDMMSTLFGLV------------PKIEHYSCMVDLLARAGHLYEAWDLIRKM 490
Query: 280 IVANVKPNTVTIVSVLPAC 298
KP+ VT+ ++L AC
Sbjct: 491 ---PEKPDKVTLGALLGAC 506
>gi|15233482|ref|NP_192346.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75214457|sp|Q9XE98.1|PP303_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g04370
gi|4982476|gb|AAD36944.1|AF069441_4 hypothetical protein [Arabidopsis thaliana]
gi|7267194|emb|CAB77905.1| hypothetical protein [Arabidopsis thaliana]
gi|332656985|gb|AEE82385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 729
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 163/346 (47%), Gaps = 55/346 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y +G EI+ L Y M G+RPD + D +G+ ++ +
Sbjct: 212 SWNTMISGYASVGNMSEILKLLYRMRGDGLRPDQQTFGASLSVSGTMCDLEMGRMLHCQI 271
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F+ + +K L+ +++KCG+ E + + E
Sbjct: 272 VKTGFDVDMHLKTALITMYLKCGKEEASYRVLE--------------------------- 304
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
I KD+V W M++G G E+ + EM +D+ I + V+A+CAQ+
Sbjct: 305 ---TIPNKDVVCWTVMISGLMRLGRAEKALIVFSEMLQSGSDLSSEAI--ASVVASCAQL 359
Query: 212 KGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSII 260
LG ++HGYVLRH L T CG + S +F +++ RD+V WN+II
Sbjct: 360 GSFDLGASVHGYVLRHGYTLDTPALNSLITMYAKCGHLDKSLVIFERMNERDLVSWNAII 419
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKP-NTVTIVSVLPACLKLAALPQG-----------L 308
S + ++ + AL L ++ V+ ++ T+VS+L AC ALP G +
Sbjct: 420 SGYAQNVDLCKALLLFEEMKFKTVQQVDSFTVVSLLQACSSAGALPVGKLIHCIVIRSFI 479
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
S V AL+DMY +CG ++ +++ F + K++VSW ++I+ YG
Sbjct: 480 RPCSLVDTALVDMYSKCGYLEAAQRCFDSISWKDVVSWGILIAGYG 525
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 93/397 (23%), Positives = 171/397 (43%), Gaps = 78/397 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ G+ +H ++V G ++ S L+ ++ +WT+M+G
Sbjct: 62 LSFGLSIHQQVLVNGFSSDFYISSSLVNLYAKFGLLAHARKVFEEMRERDVVHWTAMIGC 121
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y+ G E +L M +G++P ++ E+ + ++D+ + F
Sbjct: 122 YSRAGIVGEACSLVNEMRFQGIKPGPVTLLEMLSGVLEITQLQC---LHDFAVIYGF--- 175
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D D V NS+++ Y KC ++ + F +++Q+
Sbjct: 176 ---------------------------DCDIAVMNSMLNLYCKCDHVGDAKDLFDQMEQR 208
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSWN M++GYA G E+ LL M ++P+ + L+ + +++G+
Sbjct: 209 DMVSWNTMISGYASVGNMSEILKLLYRMR--GDGLRPDQQTFGASLSVSGTMCDLEMGRM 266
Query: 220 IHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H +++ +HL TA CG S V + +DVV W +IS +R G+
Sbjct: 267 LHCQIVKTGFDVDMHLKTALITMYLKCGKEEASYRVLETIPNKDVVCWTVMISGLMRLGR 326
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNA 317
AL + +++ + ++ I SV+ +C +L + G +V N+
Sbjct: 327 AEKALIVFSEMLQSGSDLSSEAIASVVASCAQLGSFDLGASVHGYVLRHGYTLDTPALNS 386
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
LI MY +CG + KS IF M ++LVSWN +IS Y
Sbjct: 387 LITMYAKCGHLDKSLVIFERMNERDLVSWNAIISGYA 423
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 150/326 (46%), Gaps = 49/326 (15%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G ++++++ F M+ + PD F P + KAC+ L+ G ++ ++ F
Sbjct: 25 GDHKQVLSTFSSMLANKLLPDTFTFPSLLKACASLQRLSFGLSIHQQVLVNGFS------ 78
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
DF +++SL++ YAK L + F +++++D+V
Sbjct: 79 ------------------------SDFYISSSLVNLYAKFGLLAHARKVFEEMRERDVVH 114
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI--SLSGVLAACAQVKGVKLGKAIH 221
W AM+ Y+ G E +L++EM P T+ LSGVL Q++ + I+
Sbjct: 115 WTAMIGCYSRAGIVGEACSLVNEMRFQGIKPGPVTLLEMLSGVL-EITQLQCLHDFAVIY 173
Query: 222 GY-----VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL 276
G+ V+ ++L C V + +F+Q+ RD+V WN++IS + G + + L LL
Sbjct: 174 GFDCDIAVMNSMLNLYCKCDHVGDAKDLFDQMEQRDMVSWNTMISGYASVGNMSEILKLL 233
Query: 277 RDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGSFV----WNALIDMYGRC 325
+ ++P+ T + L + L G + TG V ALI MY +C
Sbjct: 234 YRMRGDGLRPDQQTFGASLSVSGTMCDLEMGRMLHCQIVKTGFDVDMHLKTALITMYLKC 293
Query: 326 GAIQKSRKIFVLMPHKNLVSWNVMIS 351
G + S ++ +P+K++V W VMIS
Sbjct: 294 GKEEASYRVLETIPNKDVVCWTVMIS 319
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 143/311 (45%), Gaps = 50/311 (16%)
Query: 14 CGVELCAFLGSQLLEVFCN-----WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVC 68
CG E ++ ++LE N WT M+ LG E+ + +F M+ G
Sbjct: 293 CGKEEASY---RVLETIPNKDVVCWTVMISGLMRLGRAEKALIVFSEMLQSGSDLSSEAI 349
Query: 69 PKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ 128
V +C++L + +G V+ Y++ + + P L
Sbjct: 350 ASVVASCAQLGSFDLGASVHGYVLRHGY----TLDTPAL--------------------- 384
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
NSLI YAKC +L S F ++ ++DLVSWNA+++GYA + L +EM+
Sbjct: 385 -----NSLITMYAKCGHLDKSLVIFERMNERDLVSWNAIISGYAQNVDLCKALLLFEEMK 439
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGF 237
+T Q ++ ++ +L AC+ + +GK IH V+R I + + CG+
Sbjct: 440 -FKTVQQVDSFTVVSLLQACSSAGALPVGKLIHCIVIRSFIRPCSLVDTALVDMYSKCGY 498
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ + F+ +S +DVV W +I+ + G+ AL++ + + + ++PN V ++VL +
Sbjct: 499 LEAAQRCFDSISWKDVVSWGILIAGYGFHGKGDIALEIYSEFLHSGMEPNHVIFLAVLSS 558
Query: 298 CLKLAALPQGL 308
C + QGL
Sbjct: 559 CSHNGMVQQGL 569
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 91/185 (49%), Gaps = 19/185 (10%)
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGF 237
M+ + P+T + +L ACA ++ + G +IH Y+ ++L G
Sbjct: 37 MLANKLLPDTFTFPSLLKACASLQRLSFGLSIHQQVLVNGFSSDFYISSSLVNLYAKFGL 96
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ + VF ++ RDVV W ++I + R+G V +A L+ ++ +KP VT++ +L
Sbjct: 97 LAHARKVFEEMRERDVVHWTAMIGCYSRAGIVGEACSLVNEMRFQGIKPGPVTLLEMLSG 156
Query: 298 CLKLAALP--------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L++ L G V N+++++Y +C + ++ +F M +++VSWN M
Sbjct: 157 VLEITQLQCLHDFAVIYGFDCDIAVMNSMLNLYCKCDHVGDAKDLFDQMEQRDMVSWNTM 216
Query: 350 ISVYG 354
IS Y
Sbjct: 217 ISGYA 221
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 8/108 (7%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
LV+ +L+D Y+KC YL+ + F I KD+VSW ++AGY G + + E +
Sbjct: 484 LVDTALVDMYSKCGYLEAAQRCFDSISWKDVVSWGILIAGYGFHGKGDIALEIYS--EFL 541
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR------HHIHLS 232
+ M+PN + VL++C+ V+ G I ++R +H HL+
Sbjct: 542 HSGMEPNHVIFLAVLSSCSHNGMVQQGLKIFSSMVRDFGVEPNHEHLA 589
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP---------- 305
+NS I+ G L ++ + P+T T S+L AC L L
Sbjct: 14 FNSHINHLSSHGDHKQVLSTFSSMLANKLLPDTFTFPSLLKACASLQRLSFGLSIHQQVL 73
Query: 306 -QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G + ++ ++L+++Y + G + +RK+F M +++V W MI Y
Sbjct: 74 VNGFSSDFYISSSLVNLYAKFGLLAHARKVFEEMRERDVVHWTAMIGCY 122
>gi|356557599|ref|XP_003547103.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31070,
mitochondrial-like [Glycine max]
Length = 601
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 160/346 (46%), Gaps = 54/346 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W S++ Y GY EE + + G+ P + V C ++G+ ++ +
Sbjct: 119 TWNSLINGYLHNGYLEEALEALNDVYLLGLVPKPELLASVVSMCGRRMGSKIGRQIHALV 178
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + E + Q ++ +L+DFY +C ++
Sbjct: 179 V-----------------------------VNERIGQSMFLSTALVDFYFRCGDSLMALR 209
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ K++VSW M++G +E M+ + PN ++ +L+ACA+
Sbjct: 210 VFDGMEVKNVVSWTTMISGCIAHQDYDEAFACFRAMQ--AEGVCPNRVTSIALLSACAEP 267
Query: 212 KGVKLGKAIHGYVLRHHIH----LSTACGFVICSCS--------VFNQLSTRDVVVWNSI 259
VK GK IHGY RH S+A + C C +F S RDVV+W+SI
Sbjct: 268 GFVKHGKEIHGYAFRHGFESCPSFSSALVNMYCQCGEPMHLAELIFEGSSFRDVVLWSSI 327
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW---- 315
I +F R G AL L + ++PN VT+++V+ AC L++L G G +++
Sbjct: 328 IGSFSRRGDSFKALKLFNKMRTEEIEPNYVTLLAVISACTNLSSLKHGCGLHGYIFKFGF 387
Query: 316 -------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
NALI+MY +CG + SRK+F+ MP+++ V+W+ +IS YG
Sbjct: 388 CFSISVGNALINMYAKCGCLNGSRKMFLEMPNRDNVTWSSLISAYG 433
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/346 (22%), Positives = 148/346 (42%), Gaps = 57/346 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ Y+E F M +GV P+ + AC+E + GK+++ Y
Sbjct: 221 SWTTMISGCIAHQDYDEAFACFRAMQAEGVCPNRVTSIALLSACAEPGFVKHGKEIHGYA 280
Query: 92 ISIKFEGNACVKRPLLDLFIKCGR-MEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
FE L++++ +CG M + +FE F
Sbjct: 281 FRHGFESCPSFSSALVNMYCQCGEPMHLAELIFE--GSSF-------------------- 318
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+D+V W++++ ++ G + L ++M +++PN ++L V++AC
Sbjct: 319 --------RDVVLWSSIIGSFSRRGDSFKALKLFNKMRT--EEIEPNYVTLLAVISACTN 368
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACG------FVICSC-----SVFNQLSTRDVVVWNSI 259
+ +K G +HGY+ + S + G + C C +F ++ RD V W+S+
Sbjct: 369 LSSLKHGCGLHGYIFKFGFCFSISVGNALINMYAKCGCLNGSRKMFLEMPNRDNVTWSSL 428
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----- 314
ISA+ G AL + ++ VKP+ +T ++VL AC + +G V
Sbjct: 429 ISAYGLHGCGEQALQIFYEMNERGVKPDAITFLAVLSACNHAGLVAEGQRIFKQVRADCE 488
Query: 315 -------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMISV 352
+ L+D+ GR G ++ + +I MP K W+ ++S
Sbjct: 489 IPLTIEHYACLVDLLGRSGKLEYALEIRRTMPMKPSARIWSSLVSA 534
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 118/250 (47%), Gaps = 26/250 (10%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
+ +V+NS+I Y K + + F + +D ++WN+++ GY G+ EE L+++
Sbjct: 84 SETVVSNSIITMYFKFSDVGSARQVFDTMPHRDPITWNSLINGYLHNGYLEEALEALNDV 143
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV-----LRHHIHLSTA-------C 235
++ + P L+ V++ C + G K+G+ IH V + + LSTA C
Sbjct: 144 YLL--GLVPKPELLASVVSMCGRRMGSKIGRQIHALVVVNERIGQSMFLSTALVDFYFRC 201
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
G + + VF+ + ++VV W ++IS + +A R + V PN VT +++L
Sbjct: 202 GDSLMALRVFDGMEVKNVVSWTTMISGCIAHQDYDEAFACFRAMQAEGVCPNRVTSIALL 261
Query: 296 PACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCG-AIQKSRKIFVLMPHKNL 343
AC + A G + +AL++MY +CG + + IF +++
Sbjct: 262 SACAEPGFVKHGKEIHGYAFRHGFESCPSFSSALVNMYCQCGEPMHLAELIFEGSSFRDV 321
Query: 344 VSWNVMISVY 353
V W+ +I +
Sbjct: 322 VLWSSIIGSF 331
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 95/239 (39%), Gaps = 54/239 (22%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN----------------------WTSMMGMYN 41
G ++H + G E C S L+ ++C W+S++G ++
Sbjct: 273 GKEIHGYAFRHGFESCPSFSSALVNMYCQCGEPMHLAELIFEGSSFRDVVLWSSIIGSFS 332
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G + + LF M + + P++ V AC+ L + G ++ Y+ F +
Sbjct: 333 RRGDSFKALKLFNKMRTEEIEPNYVTLLAVISACTNLSSLKHGCGLHGYIFKFGFCFSIS 392
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
V L++++ KCG + + +F EM +D
Sbjct: 393 VGNALINMYAKCGCLNGSRKMFLEM------------------------------PNRDN 422
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
V+W+++++ Y L G E+ + EM + ++P+ I+ VL+AC V G+ I
Sbjct: 423 VTWSSLISAYGLHGCGEQALQIFYEMN--ERGVKPDAITFLAVLSACNHAGLVAEGQRI 479
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%)
Query: 303 ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
AL G + + V N++I MY + + +R++F MPH++ ++WN +I+ Y
Sbjct: 77 ALKTGSHSETVVSNSIITMYFKFSDVGSARQVFDTMPHRDPITWNSLINGY 127
>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
Length = 513
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 156/322 (48%), Gaps = 57/322 (17%)
Query: 52 LFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111
++ ++ G PD F P V K+C++ G+ V+ +I + F N
Sbjct: 21 VYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVIIKMGFVCN------------ 68
Query: 112 KCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGY 171
V NSL+ FY+ C+ + F ++ +D+VSW +++GY
Sbjct: 69 ------------------IYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGY 110
Query: 172 ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH--- 228
G +E L ++ D++PN + VL AC + + +GK IHG +
Sbjct: 111 VRAGLFDEAVGLF-----LRMDVEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGV 165
Query: 229 -IHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280
+ +S A CG + + VF++L+ +D+V W SIIS V+ +AL+L +D+
Sbjct: 166 GLEVSNALMDMYVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQ 225
Query: 281 VANVKPNTVTIVSVLPACLKLAALPQG------LGTGSFVWN-----ALIDMYGRCGAIQ 329
+ ++P+ + + SVL AC +L AL G + + W+ A++DMY +CG I+
Sbjct: 226 SSGIEPDGIILTSVLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIE 285
Query: 330 KSRKIFVLMPHKNLVSWNVMIS 351
S +IF MPHKN+++WN +++
Sbjct: 286 MSMQIFNGMPHKNVLTWNALLN 307
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 106/211 (50%), Gaps = 27/211 (12%)
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+NA+++GYA+G T L +++ P+ + VL +CA+ G+ G+ +HG
Sbjct: 1 PFNALVSGYAIGD--RPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHG 58
Query: 223 -----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
YV +H + C + VF+++ RDVV W +IS +VR+G +
Sbjct: 59 VIIKMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDE 118
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALID 320
A+ L + +V+PN T VSVL AC + L G G G V NAL+D
Sbjct: 119 AVGLF---LRMDVEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMD 175
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
MY +CG + ++++F + K++VSW +IS
Sbjct: 176 MYVKCGCLPGAKQVFDELAEKDIVSWTSIIS 206
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 130/287 (45%), Gaps = 46/287 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT ++ Y G ++E V LF M V P+ V AC VGK ++
Sbjct: 102 SWTGVISGYVRAGLFDEAVGLFLRM---DVEPNAATFVSVLVACGRKGYLSVGKGIHGLS 158
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F G+ E V+N+L+D Y KC L +
Sbjct: 159 FKSAF------------------------GVGLE------VSNALMDMYVKCGCLPGAKQ 188
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +KD+VSW ++++G +E L +M+ + ++P+ I L+ VL+ACA++
Sbjct: 189 VFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQ--SSGIEPDGIILTSVLSACARL 246
Query: 212 KGVKLGKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ G+ +H ++ R I + TA CG + S +FN + ++V+ WN+++
Sbjct: 247 GALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTWNALL 306
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
+ G L+L +++ ++PN VT +++L AC + +G
Sbjct: 307 NGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEG 353
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 83/187 (44%), Gaps = 32/187 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTS++ +E + LF M G+ PD + V AC+ L G+ V++++
Sbjct: 200 SWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACARLGALDYGRWVHEHI 259
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + D + +++D YAKC +++S
Sbjct: 260 DR------------------------------KAIKWDIQIGTAMVDMYAKCGCIEMSMQ 289
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ + K++++WNA+L G A+ G +V L + EM++ M+PN ++ +L AC
Sbjct: 290 IFNGMPHKNVLTWNALLNGLAMHGHAYKVLELFE--EMVRVGMRPNEVTFLAILTACCHC 347
Query: 212 KGVKLGK 218
V G+
Sbjct: 348 GLVNEGR 354
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 11/109 (10%)
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS--- 312
+N+++S + + A + R ++ P+ T +VL +C K + +G
Sbjct: 2 FNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVII 61
Query: 313 --------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+V N+L+ Y C + ++F M +++VSW +IS Y
Sbjct: 62 KMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGY 110
>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g30700-like [Cucumis sativus]
Length = 788
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 106/396 (26%), Positives = 183/396 (46%), Gaps = 76/396 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMY 40
+G+ +HAH IV GV F+GS +++++ W +M+ +
Sbjct: 130 RVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGF 189
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+ Y+E+ + +F M+D G+ D V A +EL++YR+G + +
Sbjct: 190 SRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDV 249
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
V L+ L+ KCG+ K R L F +I Q D
Sbjct: 250 YVLTGLISLYSKCGKS------------------------CKGRIL------FDQIDQPD 279
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
L+S+NAM++GY E L E++ + + N+ +L G++ ++L + I
Sbjct: 280 LISYNAMISGYTFNHETESAVTLF--RELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLI 337
Query: 221 HGYVLRHHIHL----STACGFVICSCS-------VFNQLSTRDVVVWNSIISAFVRSGQV 269
L+ I L STA V C + +F++ + + WN++IS + ++G
Sbjct: 338 QNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLT 397
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNAL 318
A+ L ++ ++ + PN VT+ S+L AC +L AL G L + +V AL
Sbjct: 398 DRAISLFQE-MMPQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTAL 456
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+DMY +CG+I ++R++F LM KN+V+WN MI+ YG
Sbjct: 457 VDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYG 492
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 82/322 (25%), Positives = 147/322 (45%), Gaps = 54/322 (16%)
Query: 54 YLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKC 113
+L +RPD+F A S L+D RVG ++ + I N V ++DL+ K
Sbjct: 102 HLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKF 161
Query: 114 GRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYAL 173
R E+ +F+ M ++D V WN M++G++
Sbjct: 162 TRAELARKVFDVM------------------------------PERDTVLWNTMISGFSR 191
Query: 174 GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG---------KAIHG-- 222
+ E+ + ++M+ + ++ +L+ VL A A+++ +LG K +H
Sbjct: 192 NSYFEDSIRVF--VDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDV 249
Query: 223 YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
YVL I L + CG +F+Q+ D++ +N++IS + + + A+ L R+++ +
Sbjct: 250 YVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLAS 309
Query: 283 NVKPNTVTIVSVLPAC-----LKLAALPQGLGTG------SFVWNALIDMYGRCGAIQKS 331
+ N+ T+V ++P L+L+ L Q L V AL +Y R +Q +
Sbjct: 310 GQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFA 369
Query: 332 RKIFVLMPHKNLVSWNVMISVY 353
R++F P K+L SWN MIS Y
Sbjct: 370 RQLFDESPEKSLASWNAMISGY 391
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 116/231 (50%), Gaps = 26/231 (11%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V+ +L Y + ++ + F + +K L SWNAM++GY G + +L EM
Sbjct: 352 VSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEM---M 408
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVIC 240
+ PN ++++ +L+ACAQ+ + +GK +HG + L ++++STA CG ++
Sbjct: 409 PQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVE 468
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ +F+ + ++VV WN++I+ + G +AL L +++ + + P VT +S+L AC
Sbjct: 469 ARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSH 528
Query: 301 LAALPQ------------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+ + G S + ++D+ GR G + + + MP
Sbjct: 529 SGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMP 579
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 112/230 (48%), Gaps = 25/230 (10%)
Query: 148 VSHCK--FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
V+H + F+K+ + DL +N ++ G++ G + L + T+++P+ + + +
Sbjct: 62 VAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKX-TNLRPDNFTYAFAI 120
Query: 206 AACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSC-----------SVFNQLSTRDVV 254
+A ++++ ++G +H + + + + G I VF+ + RD V
Sbjct: 121 SAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTV 180
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------A 303
+WN++IS F R+ D++ + D++ + ++ T+ +VL A +L A
Sbjct: 181 LWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLA 240
Query: 304 LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+GL + +V LI +Y +CG K R +F + +L+S+N MIS Y
Sbjct: 241 SKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGY 290
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 33/191 (17%)
Query: 30 FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
+W +M+ Y G + ++LF M+ + + P+ + AC++L +GK V+
Sbjct: 381 LASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHG 439
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
+ S + E N V+ +L+D YAKC + +
Sbjct: 440 LIKSERLESNV------------------------------YVSTALVDMYAKCGSIVEA 469
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + K++V+WNAM+ GY L G +E L EM+Q+ + P ++ +L AC+
Sbjct: 470 RQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLF--YEMLQSGIPPTGVTFLSILYACS 527
Query: 210 QVKGVKLGKAI 220
V G I
Sbjct: 528 HSGLVSEGNEI 538
>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Cucumis sativus]
Length = 679
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 94/386 (24%), Positives = 189/386 (48%), Gaps = 47/386 (12%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
++LG QVHAH+++ G++ A +GS+++ + + + SM+
Sbjct: 86 LKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRA 145
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G+ E V ++ M G D+F P V K+ EL +GK V+ ++ I + +
Sbjct: 146 YARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFD 205
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
V L+ L+ KCG + +F+ M +D N+L+ Y K + + F ++
Sbjct: 206 LYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPW 265
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+++VSW M++GY+ G ++ +L DEM + ++PN +++ VL ACAQ+ ++ G+
Sbjct: 266 RNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGR 325
Query: 219 AIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQL--STRDVVVWNSIISAFVR 265
IH R ++ + + CG ++ + + F++L + ++++ WN++I+A+
Sbjct: 326 QIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYAS 385
Query: 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-----TGSFVWNALID 320
G + A+ R++I A ++P+ +T +L C + GL + ++ N ++
Sbjct: 386 YGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVE 445
Query: 321 MY-------GRCGAIQKSRKIFVLMP 339
Y GR G + ++ K+ MP
Sbjct: 446 HYACVADLLGRAGRLAEASKLVGEMP 471
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 134/301 (44%), Gaps = 59/301 (19%)
Query: 111 IKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAG 170
+K G L + LV + ++ FYA + S F+ I + + +N+M+
Sbjct: 86 LKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRA 145
Query: 171 YALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR---- 226
YA GF E + M + + VL + ++ V +GK +HG +LR
Sbjct: 146 YARYGFAERT--VATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQ 203
Query: 227 HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL--- 276
++++T+ CG + + VF+ ++ RDV WN++++ + +SG + AL +
Sbjct: 204 FDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERM 263
Query: 277 --RDVIV----------------------------ANVKPNTVTIVSVLPACLKLAALPQ 306
R+++ + V+PN VTI+SVLPAC +L+ L +
Sbjct: 264 PWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLER 323
Query: 307 G-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP--HKNLVSWNVMISVY 353
G L + + V AL MY +CG++ +R F + KNL++WN MI+ Y
Sbjct: 324 GRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAY 383
Query: 354 G 354
Sbjct: 384 A 384
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 99/398 (24%), Positives = 195/398 (48%), Gaps = 55/398 (13%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCN----------------------WTSMMGMYNVL 43
++HAH++ + +FL +++++V CN + +M+ Y
Sbjct: 32 KIHAHIVKFSLSQSSFLVTKMVDV-CNHHAETEYANLLFKRVADPNAFLYNAMIRAYKHN 90
Query: 44 GYYEEIVNLFYLMI-----DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
Y + ++ M+ + + PD F P V K+C+ L Y +GK V+ ++ +
Sbjct: 91 KVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKS 150
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
N V+ L+++++KC ++ +FEEM ++D + N+LI + + ++ + F +++
Sbjct: 151 NTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQ 210
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
K + SW A+++GYA G + M+M+ ++P+ ISL VL ACAQ+ ++LG
Sbjct: 211 DKTIFSWTAIVSGYARIGCYADALEFFRRMQMV--GIEPDEISLVSVLPACAQLGALELG 268
Query: 218 KAIHGYV-----LRH------HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
K IH Y LR+ I + CG + +F+Q++ RDV+ W+++I
Sbjct: 269 KWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANH 328
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL------------GTGSFV 314
G+ +A++L +++ A ++PN +T V +L AC L +GL G
Sbjct: 329 GRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFESMKRDYNIEPGVEH 388
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMIS 351
+ L+++ G G + ++ ++ MP K + W ++S
Sbjct: 389 YGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLS 426
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 99/262 (37%), Gaps = 84/262 (32%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC------------------------------ 31
+LG QVH H+ G + + + L+E++
Sbjct: 134 DLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGH 193
Query: 32 ----------------------NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCP 69
+WT+++ Y +G Y + + F M G+ PD
Sbjct: 194 VRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLV 253
Query: 70 KVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQD 129
V AC++L +GK ++ Y F N CV L++++ KCG ++ LF++M+
Sbjct: 254 SVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMN-- 311
Query: 130 FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
++D++SW+ M+ G A G E L EM+
Sbjct: 312 ----------------------------ERDVISWSTMIVGLANHGRAHEAIELFQEMQ- 342
Query: 190 IQTDMQPNTISLSGVLAACAQV 211
+ ++PN I+ G+L+ACA
Sbjct: 343 -KAKIEPNIITFVGLLSACAHA 363
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 78/205 (38%), Gaps = 51/205 (24%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM---EMIQTDMQPNTISLSGVLAACA 209
F ++ + +NAM+ Y + +M + + P+ + V+ +CA
Sbjct: 69 FKRVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCA 128
Query: 210 QVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
+ LGK +HG+V + F Q S + VV NS++ +V+
Sbjct: 129 GLMCYDLGKQVHGHVFK------------------FGQKS--NTVVENSLVEMYVK---- 164
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQ 329
D+LD V + + V+ WN LI + R G ++
Sbjct: 165 CDSLDDAHKVFEEMTERDAVS------------------------WNTLISGHVRLGQMR 200
Query: 330 KSRKIFVLMPHKNLVSWNVMISVYG 354
++R IF M K + SW ++S Y
Sbjct: 201 RARAIFEEMQDKTIFSWTAIVSGYA 225
>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 960
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 97/353 (27%), Positives = 170/353 (48%), Gaps = 37/353 (10%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMI----DKGVRPDHFVCPKVYKACSELKDYRVGKDV 87
+WT+M+ Y+ G++ F LMI D G D F V KAC L D R+ +
Sbjct: 109 SWTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQL 168
Query: 88 YDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLI----DFYAK 142
+ + + F C++ ++ +++KCG +++ +F ++++ L NS+I Y
Sbjct: 169 HALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGP 228
Query: 143 CRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLS 202
+ L++ F+++ ++D VSWN +++ ++ GF + + +EM PN ++
Sbjct: 229 YKALQI----FNRMPERDEVSWNTLISIFSQHGFGVQCLAMF--VEMCNQGFSPNFMTYG 282
Query: 203 GVLAACAQVKGVKLGKAIHGYVLR--HHIHLSTACG----FVICSC-----SVFNQLSTR 251
VL+ACA +K G +H +LR H + L G + C C VF L
Sbjct: 283 SVLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREH 342
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LK 300
D + WNS+I+ V G DAL L + ++V + + ++L C L
Sbjct: 343 DHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLH 402
Query: 301 LAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ G+G+ + V NA+I MY +CG K+ +F LMP +N +SW MI+ +
Sbjct: 403 GYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAF 455
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/344 (22%), Positives = 164/344 (47%), Gaps = 27/344 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ G E+ + LF M V D F+ P + CS G+ ++ Y
Sbjct: 346 SWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYT 405
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSH 150
I +A V ++ ++ KCG + +F M ++ + ++I +++ + +
Sbjct: 406 IKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKAR 465
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + ++++V+WN+ML+ Y GF EE L + M +QP+ I+ + + ACA
Sbjct: 466 GYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLY--VSMRSNGVQPDWITFTTSIRACAD 523
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ VKLG + + + + L+ + CG + + + F+ + +D++ WN++
Sbjct: 524 LAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLISWNAM 583
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------G 307
++AF ++G + +D D++ KPN ++ VSVL C + + + G
Sbjct: 584 LAAFAQNGLGIKVIDTFEDMLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVFG 643
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMI 350
+ + ++ ++D+ GR G +++++ + MP K N W+ ++
Sbjct: 644 ISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMPFKPNATVWSALL 687
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/376 (22%), Positives = 160/376 (42%), Gaps = 85/376 (22%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ +++ G+ + + +F M ++G P+ V AC+ D + G ++ +
Sbjct: 245 SWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARI 304
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ RME + D + N LID YAKC L ++
Sbjct: 305 L----------------------RMEHS--------LDLVFGNGLIDMYAKCGCLDLAKR 334
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +++ D +SWN+++ G G E+ L ++M ++ + + L +L C+
Sbjct: 335 VFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMR--RSSVVLDEFILPTILGVCSGP 392
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICS----CS-------VFNQLSTRDVVVWNSII 260
G+ +HGY ++ + S G I + C VF + R+ + W ++I
Sbjct: 393 DYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMI 452
Query: 261 SAFVRSGQVVDA---LDLL--RDVIVAN--------------------------VKPNTV 289
+AF RSG + A D++ R+++ N V+P+ +
Sbjct: 453 TAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWI 512
Query: 290 TIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLM 338
T + + AC LA A GL V N+++ MY RCG I++++ F +
Sbjct: 513 TFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSI 572
Query: 339 PHKNLVSWNVMISVYG 354
K+L+SWN M++ +
Sbjct: 573 DDKDLISWNAMLAAFA 588
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 74/340 (21%), Positives = 132/340 (38%), Gaps = 59/340 (17%)
Query: 71 VYKACS-ELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-Q 128
+K CS K + + ++ +I + + + LL ++ CG +F+E +
Sbjct: 13 AFKQCSFTHKSPHIARKLHAQLILSGLDSSLFLLNNLLHMYSNCGLTHDAFQVFQETHHR 72
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSK--IKQKDLVSWNAMLAGYALGGFREEVTNLLDE 186
+ N++I + + F + ++ KD VSW M++GY+ GF
Sbjct: 73 NIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSL 132
Query: 187 MEMIQTDMQPN--TISLSGVLAACAQVKGVKLGKAIH------GYVLRHHIHLSTACGFV 238
M D N S + V+ AC + +L +H G+ + I S +V
Sbjct: 133 MIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYV 192
Query: 239 IC------------------------------------SCSVFNQLSTRDVVVWNSIISA 262
C + +FN++ RD V WN++IS
Sbjct: 193 KCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISI 252
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW------- 315
F + G V L + ++ PN +T SVL AC + L G + +
Sbjct: 253 FSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLD 312
Query: 316 ----NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
N LIDMY +CG + ++++F + + +SWN +I+
Sbjct: 313 LVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLIT 352
>gi|225457865|ref|XP_002279206.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26540
[Vitis vinifera]
Length = 711
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 101/393 (25%), Positives = 181/393 (46%), Gaps = 48/393 (12%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYN 41
L Q+H ++ G LGS L++++ +W ++ Y
Sbjct: 179 LSKQIHGLIVKYGFCWNVILGSSLVDIYGKCRVMSDARRMFDEIENPNAISWNVIVRRYL 238
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+G +E V +F+ MI +RP +F ACS + + G ++ I I ++ +
Sbjct: 239 EMGNEKEAVVMFFKMIRANIRPLNFTFSNALIACSSISALQEGIQIHGVAIRIGYDEDEV 298
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKIKQKD 160
V L+D++ KCG +E +FE L++ S++ YA + + F ++ ++
Sbjct: 299 VSSSLIDMYAKCGDLESACRIFELPSSKNLISWTSIVSGYAMSGQTREARVLFDEMPERS 358
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
++SWNAMLAGY EE + M D+ T+ L +L CA + V+ GK +
Sbjct: 359 VISWNAMLAGYTHFCQWEEALEFVFLMRKATQDIDHVTVGL--ILNVCAGLSDVESGKQV 416
Query: 221 HGYVLRHH-----------IHLSTACGFVICSCSVFNQLST-RDVVVWNSIISAFVRSGQ 268
HG++ RH +H+ CG + + F Q+S RD + WN+++++ R G
Sbjct: 417 HGFIYRHGLYSNLFVGNALLHMYGKCGNLRSTRLWFYQMSHWRDRISWNALLTSHARHGL 476
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNA 317
+A+ + + + P+ T+ ++L AC + AL QG F+ A
Sbjct: 477 SEEAMTIFGE-MQWETTPSKFTLGTLLSACANIFALEQGKQIHGFMIRNGYEIDVVARGA 535
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
L+DMY +C ++ + K+F P ++L+ WN MI
Sbjct: 536 LVDMYSKCRCLEYALKVFKEAPSRDLILWNSMI 568
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 126/247 (51%), Gaps = 25/247 (10%)
Query: 130 FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
FL+N + I+ Y KC L + F ++ Q+D SWNAM+ YA GG E+ L M
Sbjct: 96 FLLNRA-IETYGKCSCLDDARELFEEMPQRDGGSWNAMITAYAQGGCAEKALWLFSRMNR 154
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH----HIHLSTACGFVICSCSV- 244
+ + N I+ + VL +CA V + L K IHG ++++ ++ L ++ + C V
Sbjct: 155 L--GIWANEITFASVLGSCATVLALFLSKQIHGLIVKYGFCWNVILGSSLVDIYGKCRVM 212
Query: 245 ------FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
F+++ + + WN I+ ++ G +A+ + +I AN++P T + L AC
Sbjct: 213 SDARRMFDEIENPNAISWNVIVRRYLEMGNEKEAVVMFFKMIRANIRPLNFTFSNALIAC 272
Query: 299 LKLAALPQGL-----------GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
++AL +G+ V ++LIDMY +CG ++ + +IF L KNL+SW
Sbjct: 273 SSISALQEGIQIHGVAIRIGYDEDEVVSSSLIDMYAKCGDLESACRIFELPSSKNLISWT 332
Query: 348 VMISVYG 354
++S Y
Sbjct: 333 SIVSGYA 339
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 149/342 (43%), Gaps = 65/342 (19%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y +EE + +LM DH + C+ L D GK V+ ++
Sbjct: 361 SWNAMLAGYTHFCQWEEALEFVFLMRKATQDIDHVTVGLILNVCAGLSDVESGKQVHGFI 420
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
R + S LF V N+L+ Y KC L+ +
Sbjct: 421 Y----------------------RHGLYSNLF--------VGNALLHMYGKCGNLRSTRL 450
Query: 152 KFSKIKQ-KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ +D +SWNA+L +A G EE + EM Q + P+ +L +L+ACA
Sbjct: 451 WFYQMSHWRDRISWNALLTSHARHGLSEEAMTIFGEM---QWETTPSKFTLGTLLSACAN 507
Query: 211 VKGVKLGKAIHGYVLRHHIHLST-ACGFVI-----CSC-----SVFNQLSTRDVVVWNSI 259
+ ++ GK IHG+++R+ + A G ++ C C VF + +RD+++WNS+
Sbjct: 508 IFALEQGKQIHGFMIRNGYEIDVVARGALVDMYSKCRCLEYALKVFKEAPSRDLILWNSM 567
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL--KLAALPQGLGTGSFV--- 314
I +G+ D L L + VKP+ +T +L C+ LA GLGT F
Sbjct: 568 ILGCCHNGRGRDVLGLFGLMEEEGVKPDHITFQGILLGCICEGLA----GLGTEYFNSMS 623
Query: 315 -----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
+ ++I++YGR G + + MP + V+
Sbjct: 624 NKYCIIPRLEHYESMIELYGRHGFMDELEDFIKRMPFEPTVA 665
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/377 (22%), Positives = 152/377 (40%), Gaps = 86/377 (22%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G E+ + LF M G+ + V +C+ + + K ++ +
Sbjct: 128 SWNAMITAYAQGGCAEKALWLFSRMNRLGIWANEITFASVLGSCATVLALFLSKQIHGLI 187
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F N + L+D++ KC M +F+E
Sbjct: 188 VKYGFCWNVILGSSLVDIYGKCRVMSDARRMFDE-------------------------- 221
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
I+ + +SWN ++ Y G +E + +MI+ +++P + S L AC+ +
Sbjct: 222 ----IENPNAISWNVIVRRYLEMGNEKEAVVMF--FKMIRANIRPLNFTFSNALIACSSI 275
Query: 212 KGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ G IHG +R I + CG + +C +F S+++++ W SI+
Sbjct: 276 SALQEGIQIHGVAIRIGYDEDEVVSSSLIDMYAKCGDLESACRIFELPSSKNLISWTSIV 335
Query: 261 SAFVRSGQVVDALDLL-----RDVIVANV--------------------------KPNTV 289
S + SGQ +A L R VI N + V
Sbjct: 336 SGYAMSGQTREARVLFDEMPERSVISWNAMLAGYTHFCQWEEALEFVFLMRKATQDIDHV 395
Query: 290 TIVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLM 338
T+ +L C L+ + GL + FV NAL+ MYG+CG ++ +R F M
Sbjct: 396 TVGLILNVCAGLSDVESGKQVHGFIYRHGLYSNLFVGNALLHMYGKCGNLRSTRLWFYQM 455
Query: 339 PH-KNLVSWNVMISVYG 354
H ++ +SWN +++ +
Sbjct: 456 SHWRDRISWNALLTSHA 472
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 91/230 (39%), Gaps = 55/230 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF----------------------CNWTSMMG 38
+E G QVH + G+ F+G+ LL ++ +W +++
Sbjct: 410 VESGKQVHGFIYRHGLYSNLFVGNALLHMYGKCGNLRSTRLWFYQMSHWRDRISWNALLT 469
Query: 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
+ G EE + +F M P F + AC+ + GK ++ +MI +E
Sbjct: 470 SHARHGLSEEAMTIFGEM-QWETTPSKFTLGTLLSACANIFALEQGKQIHGFMIRNGYEI 528
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
+ + L+D++ KC +E YA LKV F +
Sbjct: 529 DVVARGALVDMYSKCRCLE----------------------YA----LKV----FKEAPS 558
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
+DL+ WN+M+ G G +V L ME + ++P+ I+ G+L C
Sbjct: 559 RDLILWNSMILGCCHNGRGRDVLGLFGLME--EEGVKPDHITFQGILLGC 606
>gi|242091211|ref|XP_002441438.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
gi|241946723|gb|EES19868.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
Length = 771
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 101/395 (25%), Positives = 182/395 (46%), Gaps = 76/395 (19%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYN 41
G+ VH ++ G++ LG+ L++++ +W S +G +
Sbjct: 231 FGLSVHGLVLKSGLDSVVNLGNALVDMYGKFGDLESSMRVFNGMQEKNEVSWNSALGCFA 290
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G++E+++ +F +M + V P + A +L + +GK+V+ Y I
Sbjct: 291 HAGFHEDVLEMFRVMSEHEVTPGSVTLSSLLPALVDLGYFHLGKEVHGYSIR-------- 342
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
M+ D + NSL+D YAK L+ + F I+ +++
Sbjct: 343 ----------------------RAMESDIFIANSLMDMYAKFGCLEKASAIFENIEGRNV 380
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSWNAM+A A G E +L+ EM+ + PN+ +L +L AC++V VK+GK IH
Sbjct: 381 VSWNAMIANLAQNGAETEAFSLVIEMQ--KNGECPNSFTLVNLLPACSRVASVKMGKQIH 438
Query: 222 GYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
+ + I + CG + + +F++ S +D V +N++I + +S
Sbjct: 439 AWSIHRSLMSDLFVSNALIDVYAKCGQLSVAQDIFDR-SEKDDVSYNTLIVGYSQSQCCF 497
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALI 319
++L L + + A ++ + V+ + L AC L+A QG L T F+ N+L+
Sbjct: 498 ESLHLFQQMRSAGIEYDAVSFMGCLSACANLSAFKQGKEIHGVLVRRLLNTHPFLANSLL 557
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
D+Y + G + + KIF + K++ SWN MI YG
Sbjct: 558 DLYTKGGMLATASKIFNRITRKDVASWNTMILGYG 592
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 122/245 (49%), Gaps = 24/245 (9%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D N+L+ FYA + F ++ +D+VSWN++++ G E+ + +
Sbjct: 146 DVFAGNTLVTFYAARGRAADARRVFDEMPARDIVSWNSLVSALLTNGMLEDAKRAV--VG 203
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----IHLSTAC-------GF 237
M+++ + N SL V+ AC + G ++HG VL+ ++L A G
Sbjct: 204 MMRSGIPVNVASLVSVVPACGTERDEGFGLSVHGLVLKSGLDSVVNLGNALVDMYGKFGD 263
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ S VFN + ++ V WNS + F +G D L++ R + V P +VT+ S+LPA
Sbjct: 264 LESSMRVFNGMQEKNEVSWNSALGCFAHAGFHEDVLEMFRVMSEHEVTPGSVTLSSLLPA 323
Query: 298 CLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
+ L ++ + + + F+ N+L+DMY + G ++K+ IF + +N+VSW
Sbjct: 324 LVDLGYFHLGKEVHGYSIRRAMESDIFIANSLMDMYAKFGCLEKASAIFENIEGRNVVSW 383
Query: 347 NVMIS 351
N MI+
Sbjct: 384 NAMIA 388
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 82/381 (21%), Positives = 156/381 (40%), Gaps = 76/381 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
LG +VH + I +E F+ + L++++ +W +M+
Sbjct: 331 HLGKEVHGYSIRRAMESDIFIANSLMDMYAKFGCLEKASAIFENIEGRNVVSWNAMIANL 390
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G E +L M G P+ F + ACS + ++GK ++ + I +
Sbjct: 391 AQNGAETEAFSLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIHRSLMSDL 450
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
V L+D++ KCG++ + +F+ +KD
Sbjct: 451 FVSNALIDVYAKCGQLSVAQDIFDR-------------------------------SEKD 479
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
VS+N ++ GY+ E +L +M ++ + +S G L+ACA + K GK I
Sbjct: 480 DVSYNTLIVGYSQSQCCFESLHLFQQMR--SAGIEYDAVSFMGCLSACANLSAFKQGKEI 537
Query: 221 HGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
HG ++R ++ L T G + + +FN+++ +DV WN++I + GQ+
Sbjct: 538 HGVLVRRLLNTHPFLANSLLDLYTKGGMLATASKIFNRITRKDVASWNTMILGYGMHGQI 597
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNAL 318
A +L + V + V+ ++VL AC + +G + + +
Sbjct: 598 DVAFELFDLMKDDGVDYDHVSYIAVLSACSHGGLVDRGKKYFSQMIAQNIKPQQMHYACM 657
Query: 319 IDMYGRCGAIQKSRKIFVLMP 339
+D+ GR G + +S +I MP
Sbjct: 658 VDLLGRAGQLSESVEIITNMP 678
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 68/122 (55%), Gaps = 11/122 (9%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC----- 298
VF+++ RD+V WNS++SA + +G + DA + ++ + + N ++VSV+PAC
Sbjct: 169 VFDEMPARDIVSWNSLVSALLTNGMLEDAKRAVVGMMRSGIPVNVASLVSVVPACGTERD 228
Query: 299 ------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+ L GL + + NAL+DMYG+ G ++ S ++F M KN VSWN +
Sbjct: 229 EGFGLSVHGLVLKSGLDSVVNLGNALVDMYGKFGDLESSMRVFNGMQEKNEVSWNSALGC 288
Query: 353 YG 354
+
Sbjct: 289 FA 290
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 17/122 (13%)
Query: 248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL------------ 295
L R +WNS+ A +G +AL + ++ + V+P+ T L
Sbjct: 66 LRLRSAFLWNSLSRALASAGLPSEALRVYNCMVRSGVRPDDRTFPFALHAAAAAVVAEAE 125
Query: 296 ----PACLKLAALPQGLGTGS-FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
A L AAL +GL F N L+ Y G +R++F MP +++VSWN ++
Sbjct: 126 HPAKGAELHAAALRRGLLLADVFAGNTLVTFYAARGRAADARRVFDEMPARDIVSWNSLV 185
Query: 351 SV 352
S
Sbjct: 186 SA 187
>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial [Vitis vinifera]
Length = 875
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 112/393 (28%), Positives = 182/393 (46%), Gaps = 75/393 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLL----EVFC-----------------NWTSMMGM 39
+ +G +VH +I CG E A + + LL E+ C W+S++
Sbjct: 116 LSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLN 175
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ G E +++F MI + V PD V +ACSEL R+G+ V+ Y++ + E N
Sbjct: 176 FVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESN 235
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
A +NNSLI Y K L + F + +
Sbjct: 236 AS------------------------------LNNSLIVMYGKLGDLYSAERLFENVPCR 265
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
W M++ Y G +E N+ +M+ + M+PN +++ GVL ACA++ VK G++
Sbjct: 266 MTAPWTPMISCYNQSGCFQEALNVFAKMQEFK--MEPNQVTMVGVLCACARLGRVKEGRS 323
Query: 220 IHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
+HG+V+R + L G + VF + + ++ WN++IS F R+G
Sbjct: 324 VHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNG 383
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----LKLAALPQG--LGTGS---FVWNA 317
Q +AL L + + P++ ++ S L AC +L A G + TG+ FV NA
Sbjct: 384 QPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDFVQNA 443
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
LIDMY +CG + + K+F + K+LV+WN MI
Sbjct: 444 LIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMI 476
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 107/396 (27%), Positives = 184/396 (46%), Gaps = 73/396 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLL-------------EVFCN--------WTSMMGM 39
+ LG VH +++ +E A L + L+ +F N WT M+
Sbjct: 217 LRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISC 276
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
YN G ++E +N+F M + + P+ V AC+ L + G+ V+ ++I +
Sbjct: 277 YNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMD-- 334
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
P LD + +L++ YA L+ H F IK+K
Sbjct: 335 -----PELDF----------------------LGPALMELYADTGNLRDCHKVFETIKEK 367
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
++SWN +++ + G EE LL ++M + P++ SL+ L+AC + +LG
Sbjct: 368 TILSWNTLISIFTRNGQPEEA--LLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQ 425
Query: 220 IHGYVLRHH----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
IHGY+++ I + CGFV + +F ++ + +V WNS+I F ++G
Sbjct: 426 IHGYIIKTGNFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYS 485
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNAL 318
V+A+ L + + VK + +T +SV+ AC L L +G L S++ AL
Sbjct: 486 VEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTAL 545
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
DMY +CG +Q + +F M +++VSW+VMI+ YG
Sbjct: 546 TDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYG 581
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/393 (24%), Positives = 178/393 (45%), Gaps = 77/393 (19%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNVLG 44
Q+HAHL + G+ ++L+E + W ++ Y G
Sbjct: 19 QLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGG 78
Query: 45 YYEEIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
++EE V+L++ M+ + +FV P V KACS D VG V+ +I FE +A V+
Sbjct: 79 FFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVE 138
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
LL ++ G M S +D K F + +D+V+
Sbjct: 139 TSLLCMY---GEM------------------SCLDDACKA---------FDTMPIRDVVA 168
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
W++++ + G E ++ +MI ++P+++++ V AC+++ ++LG+++HGY
Sbjct: 169 WSSIVLNFVQNGQASEGLDMFS--QMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGY 226
Query: 224 VLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
V+R I + + G + + +F + R W +IS + +SG +A
Sbjct: 227 VVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEA 286
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN------------ALID 320
L++ + ++PN VT+V VL AC +L + +G FV AL++
Sbjct: 287 LNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALME 346
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+Y G ++ K+F + K ++SWN +IS++
Sbjct: 347 LYADTGNLRDCHKVFETIKEKTILSWNTLISIF 379
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 159/347 (45%), Gaps = 64/347 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ ++ G EE + LF M +G+ PD + AC + ++G ++ Y+
Sbjct: 371 SWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYI 430
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I +G F + V N+LID YAKC ++ ++
Sbjct: 431 IK--------------------------TGNFND-----FVQNALIDMYAKCGFVHSANK 459
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F KIK+K LV+WN+M+ G++ G+ E L D+M M M + ++ V+ AC+ +
Sbjct: 460 MFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKM--DKLTFLSVIQACSHL 517
Query: 212 KGVKLGKAIHG----YVLRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
++ GK +H Y LR +L TA CG + + VF+++S R +V W+ +I
Sbjct: 518 GYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMI 577
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA--- 317
+ + GQ+ + L ++ + +KPN +T + +L AC A+ + G +N+
Sbjct: 578 AGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEE----GKLYFNSMSE 633
Query: 318 ------------LIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMIS 351
++D+ R G + + +I +P N W +++
Sbjct: 634 FGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLN 680
>gi|255562765|ref|XP_002522388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538466|gb|EEF40072.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 472
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 149/289 (51%), Gaps = 14/289 (4%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+G Y+ LG+ +E+ LF M + G D F + CS D +G+ V+ Y+
Sbjct: 156 SWNSMIGGYSKLGWCKEVFLLFKEMREIGTEADDFTLVNLLLVCSRRCDINLGRFVHLYI 215
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSH 150
+ + + L+D++ KCG + + +F++M +V+ S+I YAK ++ +
Sbjct: 216 QITGMKIDLVARNALIDMYAKCGALVLAERVFQQMPNKNVVSWTSMITAYAKQGLVEYAR 275
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ +K++VSWN+M++ Y GG E +L EM + + PN +L VL+AC Q
Sbjct: 276 KSFDQMPEKNVVSWNSMISSYVQGGQCREALDLFHEMHSFR--VVPNEATLLSVLSACGQ 333
Query: 211 VKGVKLGKAIHGYVL-----------RHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ + +GK IH Y+ I + CG + + VFN++ +++V WN I
Sbjct: 334 IGDLVMGKKIHNYICGTSSMYSVTLCNSLIDMYAKCGALRIAIDVFNEMPNKNLVSWNVI 393
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
I A G V+A++L R + A V P+ +T + +L AC + GL
Sbjct: 394 IGALALHGYGVEAVELFRKMQAAGVWPDEITFMGLLSACSHSGLVDSGL 442
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 109/397 (27%), Positives = 182/397 (45%), Gaps = 96/397 (24%)
Query: 8 HAHLIVCGVELC-AFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHF 66
+AHL+ + + F+ + L+ +CN S + + + L+ +ID G+ P+ F
Sbjct: 40 YAHLVFNQISIPNKFMYNSLIRGYCNSNSPI----------KSMFLYRQLIDSGLSPNEF 89
Query: 67 VCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126
P V KAC+ + + V+ + + F CV+
Sbjct: 90 TFPFVLKACASKSAHWMSMIVHGHAQKLGFASLICVQ----------------------- 126
Query: 127 DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDE 186
N LI+ Y C +++ + F + ++ LVSWN+M+ GY+ G+ +EV L E
Sbjct: 127 -------NGLINAYIACGFIRYARKMFDDMSERSLVSWNSMIGGYSKLGWCKEVFLLFKE 179
Query: 187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY----------VLRHH-IHLSTAC 235
M I T + + +L +L C++ + LG+ +H Y V R+ I + C
Sbjct: 180 MREIGT--EADDFTLVNLLLVCSRRCDINLGRFVHLYIQITGMKIDLVARNALIDMYAKC 237
Query: 236 GFVICSCSVF-------------------------------NQLSTRDVVVWNSIISAFV 264
G ++ + VF +Q+ ++VV WNS+IS++V
Sbjct: 238 GALVLAERVFQQMPNKNVVSWTSMITAYAKQGLVEYARKSFDQMPEKNVVSWNSMISSYV 297
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGSF---- 313
+ GQ +ALDL ++ V PN T++SVL AC ++ L G GT S
Sbjct: 298 QGGQCREALDLFHEMHSFRVVPNEATLLSVLSACGQIGDLVMGKKIHNYICGTSSMYSVT 357
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ N+LIDMY +CGA++ + +F MP+KNLVSWNV+I
Sbjct: 358 LCNSLIDMYAKCGALRIAIDVFNEMPNKNLVSWNVII 394
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 108/231 (46%), Gaps = 24/231 (10%)
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
L +H F++I + +N+++ GY + ++ ++I + + PN + VL
Sbjct: 38 LDYAHLVFNQISIPNKFMYNSLIRGYC--NSNSPIKSMFLYRQLIDSGLSPNEFTFPFVL 95
Query: 206 AACAQVKGVKLGKAIHGY-----------VLRHHIHLSTACGFVICSCSVFNQLSTRDVV 254
ACA + +HG+ V I+ ACGF+ + +F+ +S R +V
Sbjct: 96 KACASKSAHWMSMIVHGHAQKLGFASLICVQNGLINAYIACGFIRYARKMFDDMSERSLV 155
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK-----------LAA 303
WNS+I + + G + L +++ + + T+V++L C + L
Sbjct: 156 SWNSMIGGYSKLGWCKEVFLLFKEMREIGTEADDFTLVNLLLVCSRRCDINLGRFVHLYI 215
Query: 304 LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G+ NALIDMY +CGA+ + ++F MP+KN+VSW MI+ Y
Sbjct: 216 QITGMKIDLVARNALIDMYAKCGALVLAERVFQQMPNKNVVSWTSMITAYA 266
>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 152/278 (54%), Gaps = 15/278 (5%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
+T+++ + G Y E + L+ M+ + + PD+++ + KAC R G++V+ +
Sbjct: 115 YTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRAL 174
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ F N V+ +++L+ KCG + +FEEM +D + + +I Y+ ++ +
Sbjct: 175 KLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAV 234
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ-TDMQPNTISLSGVLAACAQV 211
FS++++KD V W AM+ G+ EE L+ +Q +++PN ++ VL+AC+Q+
Sbjct: 235 FSRVRRKDTVCWTAMIDGFVRN---EETNRALEAFRGMQGENVRPNEFTIVCVLSACSQL 291
Query: 212 KGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSII 260
+++G+ +H Y+ + I L+ + CG + + +VF+++ RDV+ +N++I
Sbjct: 292 GALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMI 351
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
S +G+ A++L R ++ ++P VT V VL AC
Sbjct: 352 SGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNAC 389
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 118/276 (42%), Gaps = 54/276 (19%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
QD + L+ +KC + + F ++ + A++ G+ G E L M
Sbjct: 79 QDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRM 138
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-----------HHIHLSTACG 236
+ + P+ ++ +L AC ++ G+ +H L+ + L CG
Sbjct: 139 --LHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCG 196
Query: 237 ------------------------------FVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
V + +VF+++ +D V W ++I FVR+
Sbjct: 197 ELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRN 256
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVW 315
+ AL+ R + NV+PN TIV VL AC +L AL G S FV
Sbjct: 257 EETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVG 316
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
NALI+MY RCG+I +++ +F M ++++++N MIS
Sbjct: 317 NALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMIS 352
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 115/272 (42%), Gaps = 66/272 (24%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT+M+ + + F M + VRP+ F V ACS+L +G+ V+ YM
Sbjct: 246 WTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMR 305
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ E L+LF V N+LI+ Y++C + +
Sbjct: 306 KFEIE---------LNLF---------------------VGNALINMYSRCGSIDEAQTV 335
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++K +D++++N M++G ++ G + L M+ ++P ++ GVL AC+
Sbjct: 336 FDEMKDRDVITYNTMISGLSMNGKSRQAIELF--RVMVGRRLRPTNVTFVGVLNACS--- 390
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVV------WNSIISAFVRS 266
HG G V +F+ ++ RD V + ++ R
Sbjct: 391 --------HG-------------GLVDFGFEIFHSMA-RDYRVEPQIEHYGCMVDLLGRV 428
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
G++ +A DL+R + + P+ + + ++L AC
Sbjct: 429 GRLEEAYDLIRTM---KMTPDHIMLGTLLSAC 457
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 68/132 (51%), Gaps = 12/132 (9%)
Query: 233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
+ C + + +F +V ++ ++I FV SG ++A+ L ++ ++ P+ +
Sbjct: 92 SKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMA 151
Query: 293 SVLPACLKLAALPQGLGTGS------FVWNALI-----DMYGRCGAIQKSRKIFVLMPHK 341
S+L AC AL +G S F N L+ ++YG+CG + +R++F MP +
Sbjct: 152 SILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMP-E 210
Query: 342 NLVSWNVMISVY 353
++V+ VMIS Y
Sbjct: 211 DVVASTVMISSY 222
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 64/152 (42%), Gaps = 30/152 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E+G VH+++ +EL F+G+ L+ ++ + +M+
Sbjct: 294 LEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISG 353
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY-----DYMISI 94
++ G + + LF +M+ + +RP + V ACS G +++ DY +
Sbjct: 354 LSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEP 413
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126
+ E C ++DL + GR+E L M
Sbjct: 414 QIEHYGC----MVDLLGRVGRLEEAYDLIRTM 441
>gi|347954468|gb|AEP33734.1| chlororespiratory reduction 21, partial [Lepidium virginicum]
Length = 788
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 168/345 (48%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++G+ +G E + F MI+ GV PD++V P V KAC L+ G+ V+ Y+
Sbjct: 100 SWAAIIGLKCRIGLCEGALTGFVEMIENGVLPDNYVVPNVCKACGALQWTWFGRGVHGYL 159
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + CV V +SL D Y KC L +
Sbjct: 160 VKAGL--HDCV----------------------------FVASSLADMYGKCGVLNDARK 189
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F KI ++++V+WNA++ GY G EE LL +M + ++P +++S L+A A +
Sbjct: 190 VFDKIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMR--KEGIEPTRVTVSTCLSASANI 247
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICS--CSV---------FNQLSTRDVVVWNSII 260
+G++ GK H + + + + G I + C V F+++ +DVV WN +I
Sbjct: 248 RGIEEGKQSHAIAIVNGLEMDNILGTSILNFYCKVGLVEYAEMIFDRMIEKDVVTWNLLI 307
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------- 313
S +V+ G V DA+ + + + + N++ ++VT+ +++ A + L G +
Sbjct: 308 SGYVQQGLVDDAIHMCKLMRLENLRYDSVTLSTLMSAAARTHNLKLGKEVQCYCIRHCFE 367
Query: 314 ----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + +DMY +CG+I ++K+F K+L+ WN +++ Y
Sbjct: 368 SEIVLASTAVDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYA 412
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 93/426 (21%), Positives = 183/426 (42%), Gaps = 87/426 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q HA IV G+E+ LG+ +L +C W ++
Sbjct: 250 IEEGKQSHAIAIVNGLEMDNILGTSILNFYCKVGLVEYAEMIFDRMIEKDVVTWNLLISG 309
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G ++ +++ LM + +R D + A + + ++GK+V Y I FE
Sbjct: 310 YVQQGLVDDAIHMCKLMRLENLRYDSVTLSTLMSAAARTHNLKLGKEVQCYCIRHCFESE 369
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEE-MDQDFLVNNSLIDFYAKC--------------- 143
+ +D++ KCG + +F+ +++D ++ N+L+ YA
Sbjct: 370 IVLASTAVDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYADSGLSGEALRLFYDMQL 429
Query: 144 ------------------RYLKVSHCK--FSKIKQK----DLVSWNAMLAGYALGGFREE 179
R +V K F +++ +L+SW M+ G G EE
Sbjct: 430 ESVPPNMITWNSIILSLLRNGQVDEAKEMFLQMQSSGIFPNLISWTTMMNGLVQNGCSEE 489
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST------ 233
N L +M+ ++ ++PN+ S++ L+ACA + + G++IHGY++R+ H S+
Sbjct: 490 AINFLRKMQ--ESGLRPNSFSITVALSACAHLASLNFGRSIHGYIIRNLQHSSSVSFVTS 547
Query: 234 ------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
CG + + F ++ ++N++ISA+ G + +A+ L R + +KP+
Sbjct: 548 LVDMYAKCGDINQAEKAFGSKLYDELPLYNAMISAYALYGNMKEAIALYRRLEDMAIKPD 607
Query: 288 TVTIVSVLPACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIF 335
++T S+L AC + Q + + + + ++D+ G K+ ++
Sbjct: 608 SITFTSLLSACSHAGDIVQAINIFTEMVSKHGMKPCLEHYGLMVDLLASSGETNKALELI 667
Query: 336 VLMPHK 341
MP+K
Sbjct: 668 KEMPYK 673
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/385 (21%), Positives = 168/385 (43%), Gaps = 92/385 (23%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYN 41
G VH +L+ G+ C F+ S L +++ W ++M Y
Sbjct: 151 FGRGVHGYLVKAGLHDCVFVASSLADMYGKCGVLNDARKVFDKIPERNVVAWNALMVGYV 210
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G EE + L M +G+ P A + ++ GK +
Sbjct: 211 QNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANIRGIEEGKQSH------------- 257
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ I +GL EMD ++ S+++FY K ++ + F ++ +KD+
Sbjct: 258 -------------AIAIVNGL--EMDN--ILGTSILNFYCKVGLVEYAEMIFDRMIEKDV 300
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
V+WN +++GY G ++ ++ M + +++ ++++LS +++A A+ +KLGK +
Sbjct: 301 VTWNLLISGYVQQGLVDDAIHMCKLMRL--ENLRYDSVTLSTLMSAAARTHNLKLGKEVQ 358
Query: 222 GYVLRH-----------HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y +RH + + CG ++ + VF+ +D+++WN++++A+ SG
Sbjct: 359 CYCIRHCFESEIVLASTAVDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYADSGLSG 418
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQK 330
+AL L D+ + +V PN +T WN++I R G + +
Sbjct: 419 EALRLFYDMQLESVPPNMIT------------------------WNSIILSLLRNGQVDE 454
Query: 331 SRKIFVLMPHK----NLVSWNVMIS 351
++++F+ M NL+SW M++
Sbjct: 455 AKEMFLQMQSSGIFPNLISWTTMMN 479
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 147/305 (48%), Gaps = 44/305 (14%)
Query: 77 ELKDYRVGKDVYDYMIS-IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNS 135
E ++ R+G ++Y ++ +E + C + + +K G DF N
Sbjct: 22 EFRNVRIGPEIYGEILQGCVYERDLCTGQQIHARILKNG--------------DFYARNQ 67
Query: 136 LID-----FYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
I+ FYAKC ++V+ FS+++ +++ SW A++ G E L +EMI
Sbjct: 68 YIETKLLIFYAKCDAIEVAQNLFSRLRVRNVFSWAAIIGLKCRIGLCEGA--LTGFVEMI 125
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVI 239
+ + P+ + V AC ++ G+ +HGY+++ +H + CG +
Sbjct: 126 ENGVLPDNYVVPNVCKACGALQWTWFGRGVHGYLVKAGLHDCVFVASSLADMYGKCGVLN 185
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ VF+++ R+VV WN+++ +V++G +A+ LL D+ ++P VT+ + L A
Sbjct: 186 DARKVFDKIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASA 245
Query: 300 KLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
+ + + GL + + ++++ Y + G ++ + IF M K++V+WN+
Sbjct: 246 NIRGIEEGKQSHAIAIVNGLEMDNILGTSILNFYCKVGLVEYAEMIFDRMIEKDVVTWNL 305
Query: 349 MISVY 353
+IS Y
Sbjct: 306 LISGY 310
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 91/203 (44%), Gaps = 26/203 (12%)
Query: 175 GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH------H 228
G E L+ EME + P +L C + + G+ IH +L++ +
Sbjct: 9 GEIREALRLVKEMEFRNVRIGPEI--YGEILQGCVYERDLCTGQQIHARILKNGDFYARN 66
Query: 229 IHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281
++ T C + + ++F++L R+V W +II R G AL ++I
Sbjct: 67 QYIETKLLIFYAKCDAIEVAQNLFSRLRVRNVFSWAAIIGLKCRIGLCEGALTGFVEMIE 126
Query: 282 ANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQK 330
V P+ + +V AC L + GL FV ++L DMYG+CG +
Sbjct: 127 NGVLPDNYVVPNVCKACGALQWTWFGRGVHGYLVKAGLHDCVFVASSLADMYGKCGVLND 186
Query: 331 SRKIFVLMPHKNLVSWNVMISVY 353
+RK+F +P +N+V+WN ++ Y
Sbjct: 187 ARKVFDKIPERNVVAWNALMVGY 209
>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 809
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 91/360 (25%), Positives = 170/360 (47%), Gaps = 27/360 (7%)
Query: 16 VELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKAC 75
VE C L + W++++ + YEE + F M GV D V AC
Sbjct: 192 VEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSAC 251
Query: 76 SELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNN 134
+ L +GK ++ + I E ++ L+ ++ KCG + + LF+E D + N
Sbjct: 252 ANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWN 311
Query: 135 SLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDM 194
S+I Y KC + + F + +KD+VSW++M++GYA +E L EM+M +
Sbjct: 312 SMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQM--SGF 369
Query: 195 QPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCS 243
+P+ +L V++ACA++ ++ GK +H Y+ R+ I + CG V +
Sbjct: 370 KPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALE 429
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
VF + + + WN++I +G V +LD+ ++ +V PN +T + VL AC +
Sbjct: 430 VFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGL 489
Query: 304 LPQG------------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ +G + + ++D+ GR G +Q++ ++ MP ++ +W ++
Sbjct: 490 VDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALL 549
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 136/332 (40%), Gaps = 71/332 (21%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W M+ Y L+ M+ + D++ P + +ACS + K V+++++
Sbjct: 46 WNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVL 105
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ F D D V N+LI+ ++ C + +
Sbjct: 106 KLGF------------------------------DSDVYVRNTLINCFSVCSNMTDACRV 135
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F++ D VSWN++LAGY G EE ++ +M + I L G+
Sbjct: 136 FNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMR------- 188
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
G V+ +C +F+++ +D+V W+++I+ F ++ +A
Sbjct: 189 -----------------------GLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEA 225
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LGTGSFV--WNALIDM 321
+ + V + V VS L AC L + G +GT S++ NALI M
Sbjct: 226 IRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYM 285
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
Y +CG I +RK+F +L+SWN MIS Y
Sbjct: 286 YSKCGDIMVARKLFDEAYLLDLISWNSMISGY 317
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 43/233 (18%)
Query: 134 NSLIDFYAKCRYLKVSHCK--FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
+ LI F ++ + + + F+ I+ + WN M+ Y L M +
Sbjct: 14 SRLIKFSTHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSM--LS 71
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-----------HHIHLSTACGFVIC 240
+ + + ++ AC+ + K +H +VL+ I+ + C +
Sbjct: 72 NYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTD 131
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+C VFN+ S D V WNSI++ ++ G V +A + + P I S
Sbjct: 132 ACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM------PERSIIAS------- 178
Query: 301 LAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
N++I ++G G + ++ K+F M K++V+W+ +I+ +
Sbjct: 179 ---------------NSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACF 216
>gi|48716412|dbj|BAD23021.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|50251414|dbj|BAD28452.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
Length = 727
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 100/348 (28%), Positives = 165/348 (47%), Gaps = 59/348 (16%)
Query: 31 CNWTSMMGMYNVLGYYEEIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
+WTSM+G GY ++ + LF M+ D ++PD V V +AC+ L+D R G V+
Sbjct: 195 ASWTSMIGACLGSGYADQALRLFREMLADGALQPDGVVAVVVLRACAMLEDVRAGASVHA 254
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
+G D V+NSL+D YAKC L+ +
Sbjct: 255 VATRRGLQG------------------------------DLFVDNSLVDMYAKCLDLRSA 284
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F I K++VSWN ML+G G E +LL +Q + + +L+ +L C
Sbjct: 285 RKVFDLIAVKNVVSWNTMLSGLVHAGSYPEALHLL----ALQIGVVGDETTLAVLLQLCK 340
Query: 210 QVK-GVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWN 257
+ + G + +++HG +R + LS A CG V +F + R+V+ W+
Sbjct: 341 KKRLGGQAARSVHGAAIRRRL-LSMALLNALLDAYGKCGLVEDVLRLFQGMRERNVITWS 399
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQ 306
++I+A + + A+ ++V +PN++T++S++ AC A A+
Sbjct: 400 TVIAACAHNARPHAAMACFVAMLVTGERPNSITVLSLVEACGSCAEMWASRRAHGVAVRS 459
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
GLG V NAL+ MYG+CG + S ++F MP K++++WN MI G
Sbjct: 460 GLGFELAVGNALVHMYGKCGELGASARVFDTMPVKDVLTWNSMIGALG 507
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 117/244 (47%), Gaps = 27/244 (11%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V NSL+ YA + F ++ +D+ SW +M+ G+ ++ L EM +
Sbjct: 165 VANSLLSLYATLGDFASAAILFGEMPDRDVASWTSMIGACLGSGYADQALRLFREM-LAD 223
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVIC 240
+QP+ + VL ACA ++ V+ G ++H R + + C +
Sbjct: 224 GALQPDGVVAVVVLRACAMLEDVRAGASVHAVATRRGLQGDLFVDNSLVDMYAKCLDLRS 283
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ VF+ ++ ++VV WN+++S V +G +AL LL + V + T+ +L C K
Sbjct: 284 ARKVFDLIAVKNVVSWNTMLSGLVHAGSYPEALHLL--ALQIGVVGDETTLAVLLQLCKK 341
Query: 301 L------------AALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
AA+ + L + + + NAL+D YG+CG ++ ++F M +N+++W+
Sbjct: 342 KRLGGQAARSVHGAAIRRRLLSMALL-NALLDAYGKCGLVEDVLRLFQGMRERNVITWST 400
Query: 349 MISV 352
+I+
Sbjct: 401 VIAA 404
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 126/291 (43%), Gaps = 47/291 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ G Y E ++L L I GV D + + C K R+G
Sbjct: 298 SWNTMLSGLVHAGSYPEALHLLALQI--GVVGDETTLAVLLQLC---KKKRLGGQ----- 347
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + A ++R LL + + N+L+D Y KC ++
Sbjct: 348 -AARSVHGAAIRRRLLSMALL---------------------NALLDAYGKCGLVEDVLR 385
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++++++++W+ ++A A + M+ T +PN+I++ ++ AC
Sbjct: 386 LFQGMRERNVITWSTVIAACAHNARPHAAMACF--VAMLVTGERPNSITVLSLVEACGSC 443
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ + HG +R +H+ CG + S VF+ + +DV+ WNS+I
Sbjct: 444 AEMWASRRAHGVAVRSGLGFELAVGNALVHMYGKCGELGASARVFDTMPVKDVLTWNSMI 503
Query: 261 SAFVRSGQVVDALDLLRDVIVA--NVKPNTVTIVSVLPACLKLAALPQGLG 309
A +G+ DAL LL + V+PN VT+++ L AC + +G+G
Sbjct: 504 GALGMNGRARDALALLHRMEAEGDEVRPNGVTMLAALWACAHGGLVEEGIG 554
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 12/150 (8%)
Query: 214 VKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
+K +IH V + L G + +F ++ RDV W S+I A + SG AL
Sbjct: 155 LKTPASIHTPVANSLLSLYATLGDFASAAILFGEMPDRDVASWTSMIGACLGSGYADQAL 214
Query: 274 DLLRDVIV-ANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDM 321
L R+++ ++P+ V V VL AC L A +GL FV N+L+DM
Sbjct: 215 RLFREMLADGALQPDGVVAVVVLRACAMLEDVRAGASVHAVATRRGLQGDLFVDNSLVDM 274
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
Y +C ++ +RK+F L+ KN+VSWN M+S
Sbjct: 275 YAKCLDLRSARKVFDLIAVKNVVSWNTMLS 304
>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 833
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 98/394 (24%), Positives = 170/394 (43%), Gaps = 75/394 (19%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYN 41
LG QV H+I G +L + + L++++ W +++ Y
Sbjct: 75 LGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYA 134
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+G+ +E LF M+D+G+ P V ACS GK+V+ +++ F +
Sbjct: 135 QVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFR 194
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ L+ +++K G M+ +F+ + +D+
Sbjct: 195 IGTALVSMYVKGGSMDDARQVFD------------------------------GLHIRDV 224
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
++N M+ GYA G E+ L M+ Q ++PN IS +L C + + GKA+H
Sbjct: 225 STFNVMVGGYAKSGDWEKAFELFYRMQ--QVGLKPNKISFLSILDGCWTPEALAWGKAVH 282
Query: 222 GY-----------VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
V I + T CG + + VF+ + RDVV W +I + +G +
Sbjct: 283 AQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIE 342
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALI 319
DA L + ++P+ +T + ++ AC A L G GT V AL+
Sbjct: 343 DAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALV 402
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
MY +CGAI+ +R++F MP +++VSW+ MI Y
Sbjct: 403 HMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAY 436
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 98/396 (24%), Positives = 169/396 (42%), Gaps = 75/396 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSM---------------------MGM 39
+ G +VHA ++ G +G+ L+ ++ SM +G
Sbjct: 174 LNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGG 233
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G +E+ LFY M G++P+ + C + GK V+
Sbjct: 234 YAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVH----------A 283
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
C+ L+D D V SLI Y C ++ + F +K +
Sbjct: 284 QCMNAGLVD--------------------DIRVATSLIRMYTTCGSIEGARRVFDNMKVR 323
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSW M+ GYA G E+ L M+ + +QP+ I+ ++ ACA + +
Sbjct: 324 DVVSWTVMIEGYAENGNIEDAFGLFATMQ--EEGIQPDRITYMHIMNACAISANLNHARE 381
Query: 220 IHGYV-----------LRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH V +H+ CG + + VF+ + RDVV W+++I A+V +G
Sbjct: 382 IHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGY 441
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNA 317
+A + + +N++P+ VT +++L AC L AL G L + + NA
Sbjct: 442 GTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNA 501
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
LI M + G+++++R IF M +++++WN MI Y
Sbjct: 502 LIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGY 537
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 142/306 (46%), Gaps = 54/306 (17%)
Query: 70 KVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQD 129
K+++ C+EL+D +GK V D++I + GR ++E
Sbjct: 62 KLFQRCTELRDAALGKQVRDHII-------------------QGGRQ---LNIYEL---- 95
Query: 130 FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
N+LI Y+ C + + F ++ K +V+WNA++AGYA G +E L +M
Sbjct: 96 ----NTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALF--RQM 149
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTAC-------GFV 238
+ ++P+ I+ VL AC+ G+ GK +H V+ + TA G +
Sbjct: 150 VDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSM 209
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ VF+ L RDV +N ++ + +SG A +L + +KPN ++ +S+L C
Sbjct: 210 DDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGC 269
Query: 299 LKLAALPQGLGTGSFVWNA-----------LIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
AL G + NA LI MY CG+I+ +R++F M +++VSW
Sbjct: 270 WTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWT 329
Query: 348 VMISVY 353
VMI Y
Sbjct: 330 VMIEGY 335
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 76/343 (22%), Positives = 150/343 (43%), Gaps = 56/343 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT M+ Y G E+ LF M ++G++PD + AC+ + ++++ +
Sbjct: 327 SWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQV 386
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F D LV+ +L+ YAKC +K +
Sbjct: 387 DIAGF------------------------------GTDLLVSTALVHMYAKCGAIKDARQ 416
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + ++D+VSW+AM+ Y G+ E M+ +++++P+ ++ +L AC +
Sbjct: 417 VFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMK--RSNIEPDGVTYINLLNACGHL 474
Query: 212 KGVKLGKAIHGYVLR----HHIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNSII 260
+ +G I+ ++ H+ L A G V + +F+ + RDV+ WN++I
Sbjct: 475 GALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMI 534
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------- 313
+ G +AL L ++ +PN+VT V VL AC + + +G ++
Sbjct: 535 GGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGI 594
Query: 314 -----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMI 350
++ ++D+ GR G + ++ + MP K S W+ ++
Sbjct: 595 VPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLL 637
>gi|302764012|ref|XP_002965427.1| hypothetical protein SELMODRAFT_84339 [Selaginella moellendorffii]
gi|300166241|gb|EFJ32847.1| hypothetical protein SELMODRAFT_84339 [Selaginella moellendorffii]
Length = 495
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 155/343 (45%), Gaps = 54/343 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W++M+ Y G +++ + LF M ++GV P+ V AC+ + G+ ++
Sbjct: 43 SWSTMVAAYAQRGDHDQALVLFQKMEEEGVEPNEVTFLSVLDACANAEAVEQGEMIHRLA 102
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
K +D +V +L+ Y KC L +
Sbjct: 103 ARKK------------------------------LDVGLIVGTALVGMYGKCSRLIEARQ 132
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F I +KD+V+W+ M++ YA G E L M + ++PN I L +L AC+
Sbjct: 133 VFDGIVEKDVVTWSTMISAYAQLGHVREAIQLFGYMNL--DGVRPNEIILMSILGACSSA 190
Query: 212 KGVKLGKAIHGYVL-----------RHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ GK H V+ I + CG + + +VF + RD++ W++++
Sbjct: 191 GALAEGKMTHELVVICGFGADVSTGNTLIKMYGKCGDLASAKAVFGGMERRDLISWSAML 250
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLG 309
+ G DA R + + VKP+ VT VS+L AC L AL +G
Sbjct: 251 AVIAEHGHCKDAFVHFRRMDLEGVKPDYVTFVSLLDACSLLGALVEGNVIHTRIRAEGFQ 310
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+ ++ N+LIDMYG+CG++Q +R IF M H+N+++W MI+
Sbjct: 311 SVMYIENSLIDMYGKCGSLQAARGIFDRMSHRNVITWTTMITA 353
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 130/244 (53%), Gaps = 24/244 (9%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
V NSL++ Y KC ++ + F + ++++SW+ M+A YA G ++ L +ME
Sbjct: 11 FVGNSLLNMYGKCGGVEEAREFFESMTHRNVISWSTMVAAYAQRGDHDQALVLFQKME-- 68
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS----TA-------CGFVI 239
+ ++PN ++ VL ACA + V+ G+ IH R + + TA C +I
Sbjct: 69 EEGVEPNEVTFLSVLDACANAEAVEQGEMIHRLAARKKLDVGLIVGTALVGMYGKCSRLI 128
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ VF+ + +DVV W+++ISA+ + G V +A+ L + + V+PN + ++S+L AC
Sbjct: 129 EARQVFDGIVEKDVVTWSTMISAYAQLGHVREAIQLFGYMNLDGVRPNEIILMSILGACS 188
Query: 300 KLAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
AL +G T V N LI MYG+CG + ++ +F M ++L+SW+
Sbjct: 189 SAGALAEGKMTHELVVICGFGADVSTGNTLIKMYGKCGDLASAKAVFGGMERRDLISWSA 248
Query: 349 MISV 352
M++V
Sbjct: 249 MLAV 252
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 153/347 (44%), Gaps = 60/347 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W++M+ Y LG+ E + LF M GVRP+ + + ACS GK ++
Sbjct: 144 TWSTMISAYAQLGHVREAIQLFGYMNLDGVRPNEIILMSILGACSSAGALAEGKMTHE-- 201
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
L + CG D N+LI Y KC L +
Sbjct: 202 -----------------LVVICG-----------FGADVSTGNTLIKMYGKCGDLASAKA 233
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++++DL+SW+AMLA A G ++ M++ ++P+ ++ +L AC+ +
Sbjct: 234 VFGGMERRDLISWSAMLAVIAEHGHCKDAFVHFRRMDL--EGVKPDYVTFVSLLDACSLL 291
Query: 212 KGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ G IH Y+ I + CG + + +F+++S R+V+ W ++I
Sbjct: 292 GALVEGNVIHTRIRAEGFQSVMYIENSLIDMYGKCGSLQAARGIFDRMSHRNVITWTTMI 351
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL------------ 308
+A V+ Q +AL+L ++ A V+P+ V +S++ +C + +G
Sbjct: 352 TACVQHEQGKEALELFEEMEKAGVQPDQVAFLSIIHSCSHSGLVEEGRIYFLKMVEDQSF 411
Query: 309 --GTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
G FV ++D+ GR G + ++ ++ MP +V WN ++S
Sbjct: 412 TPGVEHFV--GMLDLLGRSGKLNEAEELMEFMPVEPGVVGWNTLLSA 456
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 72/130 (55%), Gaps = 11/130 (8%)
Query: 235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV 294
CG V + F ++ R+V+ W+++++A+ + G AL L + + V+PN VT +SV
Sbjct: 23 CGGVEEAREFFESMTHRNVISWSTMVAAYAQRGDHDQALVLFQKMEEEGVEPNEVTFLSV 82
Query: 295 LPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
L AC A+ QG L G V AL+ MYG+C + ++R++F + K++
Sbjct: 83 LDACANAEAVEQGEMIHRLAARKKLDVGLIVGTALVGMYGKCSRLIEARQVFDGIVEKDV 142
Query: 344 VSWNVMISVY 353
V+W+ MIS Y
Sbjct: 143 VTWSTMISAY 152
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 36/47 (76%)
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
GL G FV N+L++MYG+CG ++++R+ F M H+N++SW+ M++ Y
Sbjct: 5 GLCCGEFVGNSLLNMYGKCGGVEEAREFFESMTHRNVISWSTMVAAY 51
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/267 (20%), Positives = 112/267 (41%), Gaps = 54/267 (20%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W++M+ + G+ ++ F M +GV+PD+ + ACS L G ++ +
Sbjct: 245 SWSAMLAVIAEHGHCKDAFVHFRRMDLEGVKPDYVTFVSLLDACSLLGALVEGNVIHTRI 304
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F+ ++ L+D++ KCG ++ G+F+ M SH
Sbjct: 305 RAEGFQSVMYIENSLIDMYGKCGSLQAARGIFDRM----------------------SH- 341
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+++++W M+ +E L +EME + +QP+ ++ ++ +C+
Sbjct: 342 -------RNVITWTTMITACVQHEQGKEALELFEEME--KAGVQPDQVAFLSIIHSCSHS 392
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V+ G+ Y L+ V +Q T V + ++ RSG++ +
Sbjct: 393 GLVEEGRI---YFLK----------------MVEDQSFTPGVEHFVGMLDLLGRSGKLNE 433
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPAC 298
A +L+ V+P V ++L AC
Sbjct: 434 AEELME---FMPVEPGVVGWNTLLSAC 457
>gi|302763107|ref|XP_002964975.1| hypothetical protein SELMODRAFT_30550 [Selaginella moellendorffii]
gi|300167208|gb|EFJ33813.1| hypothetical protein SELMODRAFT_30550 [Selaginella moellendorffii]
Length = 703
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 97/394 (24%), Positives = 171/394 (43%), Gaps = 79/394 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G ++HAH++ G+ FLG LL+++ +W ++ +
Sbjct: 5 GRRIHAHIVASGLASDGFLGDHLLQMYGKCGSVDDAIQVFHSLPRRSLFSWNFIIAAFAK 64
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+ + + +F M G++PD V ACS L+D GK ++
Sbjct: 65 NRHGRKAIEMFRSMDSAGIKPDSATLSSVLGACSSLRDLEEGKKIH-------------- 110
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+ L + +V N+L+ YA+C L V+ F KI+ K +V
Sbjct: 111 ----------------SRALARGLSSSIIVQNALVSMYARCSRLDVARVVFDKIESKSVV 154
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK-LGKAIH 221
SWNAM+A A G E+ L ME ++PN ++ + V AC+ + + +GK IH
Sbjct: 155 SWNAMIAACARQGEAEQALQLFKRME-----LEPNEVTFASVFNACSLLPDHREVGKRIH 209
Query: 222 GYVLRHHIHLSTACGFVICSC-----------SVFNQLSTRDVVVWNSIISAFVRSGQVV 270
+ H+ + I + VFN + ++VV WN+++ A+ ++
Sbjct: 210 DRIRGSHLEANVTVATAIVTMYGKFGKVGMARQVFNGIQHKNVVSWNAMLGAYTQNNLDR 269
Query: 271 DALDLLRDVIVANVKPNTVTIVSVL--PACLKLAAL---------PQGLGTGSFVWNALI 319
+AL++ +++ V+ + VT+V L A L+L L G + V NALI
Sbjct: 270 EALEVYHEMVAQKVQRDEVTVVIALGISASLRLLKLGIELHELSVAHGYDSNIKVQNALI 329
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
MYG+C + +R++F + ++VSW +I Y
Sbjct: 330 SMYGKCNELDAARRVFSKVRAHDVVSWTALIVAY 363
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 157/347 (45%), Gaps = 57/347 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+G Y E + +++ M+ + V+ D + L+
Sbjct: 254 SWNAMLGAYTQNNLDREALEVYHEMVAQKVQRDEVTVVIALGISASLR------------ 301
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
LL L I+ + + G D + V N+LI Y KC L +
Sbjct: 302 --------------LLKLGIELHELSVAHGY----DSNIKVQNALISMYGKCNELDAARR 343
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FSK++ D+VSW A++ Y G E L +ME M+P+ ++ + VL+AC+
Sbjct: 344 VFSKVRAHDVVSWTALIVAYTQHGRNREALELYKQME--GEGMEPDKVTFTSVLSACSNT 401
Query: 212 KGVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQ-LSTRDVVVWNS 258
++LG+A+H +L I++ CG + S +F T+ VVVWN+
Sbjct: 402 SDLELGQALHARLLARKDGFSDGVLVAALINMYVKCGRLDLSSEIFQSCKDTKAVVVWNA 461
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------- 307
+I+A+ + G A+DL + + P+ T+ S+L AC +L L +G
Sbjct: 462 MITAYEQEGYSRAAVDLYDMMKQRGLDPDESTLSSILSACAELQDLEKGEQLHVEIIASR 521
Query: 308 -LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V NALI MY CG I++++ +F M ++++VSW ++IS Y
Sbjct: 522 DCSQNPVVLNALISMYASCGEIREAKAVFKRMKNRDVVSWTILISAY 568
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 135/281 (48%), Gaps = 46/281 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+++ Y G E + L+ M +G+ PD V ACS D +G+ ++ +
Sbjct: 355 SWTALIVAYTQHGRNREALELYKQMEGEGMEPDKVTFTSVLSACSNTSDLELGQALHARL 414
Query: 92 ISIK--FEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
++ K F V L+++++KCGR++++S +F+
Sbjct: 415 LARKDGFSDGVLVA-ALINMYVKCGRLDLSSEIFQS------------------------ 449
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
CK +K +V WNAM+ Y G+ +L D M+ Q + P+ +LS +L+ACA
Sbjct: 450 -CKDTKA----VVVWNAMITAYEQEGYSRAAVDLYDMMK--QRGLDPDESTLSSILSACA 502
Query: 210 QVKGVKLGKAIH------------GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWN 257
+++ ++ G+ +H VL I + +CG + + +VF ++ RDVV W
Sbjct: 503 ELQDLEKGEQLHVEIIASRDCSQNPVVLNALISMYASCGEIREAKAVFKRMKNRDVVSWT 562
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ISA+V+ G AL L R ++V V+P T + V AC
Sbjct: 563 ILISAYVQGGDARRALRLYRRMLVEGVQPTEPTFLCVFLAC 603
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 107/266 (40%), Gaps = 54/266 (20%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y GY V+L+ +M +G+ PD + AC+EL+D G+ ++ +I
Sbjct: 459 WNAMITAYEQEGYSRAAVDLYDMMKQRGLDPDESTLSSILSACAELQDLEKGEQLHVEII 518
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ + C + P+ V N+LI YA C ++ +
Sbjct: 519 ASR----DCSQNPV-------------------------VLNALISMYASCGEIREAKAV 549
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++K +D+VSW +++ Y GG + L M+ +QP + V AC
Sbjct: 550 FKRMKNRDVVSWTILISAYVQGG--DARRALRLYRRMLVEGVQPTEPTFLCVFLACG--- 604
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
H L C + S+ T ++ +++ R+G++ +A
Sbjct: 605 ---------------HAGLVDECKWYF--QSMIEDRITPTFDHYSCVVTVLSRAGKLEEA 647
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPAC 298
DLL + P +V S+L AC
Sbjct: 648 EDLLHSM---PFNPGSVGWTSLLGAC 670
>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
Length = 721
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 110/395 (27%), Positives = 179/395 (45%), Gaps = 75/395 (18%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
ELG VH ++ G F+G+ L++ + +WT M+ Y
Sbjct: 63 ELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASY 122
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+ E + F M G +P++F V KAC L+++ GK V+ ++ +E +
Sbjct: 123 AENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDL 182
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
V LL+L+ +CG D D D + F + + D
Sbjct: 183 YVGVGLLELYTRCG------------DND--------DAWRA----------FGDMPKND 212
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
++ W+ M++ +A G E+ + +M + + PN + S VL A A ++ + L K I
Sbjct: 213 VIPWSFMISRFAQSGQSEKALEIFCQMR--RAFVIPNQFTFSSVLQASADIESLDLSKTI 270
Query: 221 HGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
HG+ L+ + +S A CG + S +F LS R+ V WN+II ++V+ G
Sbjct: 271 HGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDG 330
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL-----------GTGSFVWNAL 318
AL L +++ V+ VT S+L AC LAAL GL G V NAL
Sbjct: 331 ERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNAL 390
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
IDMY +CG+I+ +R +F ++ ++ VSWN +I Y
Sbjct: 391 IDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGY 425
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 125/286 (43%), Gaps = 43/286 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W+ M+ + G E+ + +F M V P+ F V +A ++++ + K ++
Sbjct: 216 WSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIH---- 271
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
G+A +K G + D V+N+L+ YAKC ++ S
Sbjct: 272 -----GHA----------LKAG-----------LSTDVFVSNALMACYAKCGCIEQSMEL 305
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + ++ VSWN ++ Y G E +L M ++ +Q ++ S +L ACA +
Sbjct: 306 FEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNM--LRYQVQATEVTYSSILRACATLA 363
Query: 213 GVKLG--------KAIHGY---VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++LG K I+G V I + CG + + +F+ L RD V WN+II
Sbjct: 364 ALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIIC 423
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
+ G V+A+ + + KP+ +T V VL AC L +G
Sbjct: 424 GYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEG 469
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 104/224 (46%), Gaps = 24/224 (10%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ +++ VS+ ++ GYA E L + ++ P + VL ++
Sbjct: 3 FDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNP--FVFTTVLKLLVSME 60
Query: 213 GVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIIS 261
+LG+ +HG VL+ + + TA G V + VF+++S++D+V W +I+
Sbjct: 61 WAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIA 120
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGS-- 312
++ + +AL+ + VA KPN T VL ACL L G L T
Sbjct: 121 SYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYER 180
Query: 313 --FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+V L+++Y RCG + + F MP +++ W+ MIS +
Sbjct: 181 DLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFA 224
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 100/239 (41%), Gaps = 53/239 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGS-------------QLLEVF--------CNWTSMMGM 39
++L +H H + G+ F+ + Q +E+F +W +++
Sbjct: 264 LDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVS 323
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y LG E ++LF M+ V+ + +AC+ L +G
Sbjct: 324 YVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELG--------------- 368
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
L + C + G QD V N+LID YAKC +K + F + +
Sbjct: 369 ---------LQVHCLTAKTIYG------QDVAVGNALIDMYAKCGSIKDARFMFDMLDLR 413
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
D VSWNA++ GY++ G E + + M+ +T +P+ ++ GVL+AC+ + GK
Sbjct: 414 DKVSWNAIICGYSMHGLGVEAIKMFNLMK--ETKCKPDELTFVGVLSACSNTGRLDEGK 470
>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 810
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 108/396 (27%), Positives = 179/396 (45%), Gaps = 76/396 (19%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYN 41
LG +H +I G+ L F+G+ L+ ++ +W S++ ++
Sbjct: 49 LGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFS 108
Query: 42 VLGYYEEIVNLFYLMI--DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
G+ ++ ++ M+ ++G+ PD V C+ D ++G I+ G
Sbjct: 109 ENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMG---------IRIHG- 158
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
L +K G + +D VNNSL+D Y+KC YL + F K +K
Sbjct: 159 ---------LAVKLG-----------LSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRK 198
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+ VSWN M+ G G+ E NL EM+M Q D++ N +++ +L AC ++ ++ K
Sbjct: 199 NAVSWNTMIGGLCTKGYIFEAFNLFREMQM-QEDIEVNEVTVLNILPACLEISQLRSLKE 257
Query: 220 IHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+HGY +RH CG +IC+ VF + T+ V WN++I ++G
Sbjct: 258 LHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGD 317
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLGTGSFVWNA 317
AL+L + + + P+ TI S+L A L + L GL SF+ +
Sbjct: 318 PRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGIS 377
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L+ +Y CG +R +F M K+ VSWN MIS Y
Sbjct: 378 LLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGY 413
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 163/346 (47%), Gaps = 55/346 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W +M+G GY E NLF M + + + + + AC E+ R K+++ Y
Sbjct: 202 SWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGY 261
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
I F+ D LV N + YAKC L +
Sbjct: 262 SIRHGFQ------------------------------YDELVANGFVAAYAKCGMLICAE 291
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ K + SWNA++ G A G + NL ++M + + P+ ++ +L A A
Sbjct: 292 RVFYSMETKTVNSWNALIGGCAQNGDPRKALNLY--IQMTYSGLVPDWFTIGSLLLASAH 349
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACG------FVICSCS-----VFNQLSTRDVVVWNSI 259
+K ++ GK +HG+VLRH + + + G ++ C S +F+ + + V WN++
Sbjct: 350 LKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAM 409
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNAL- 318
IS + ++G DAL L R ++ +P+ + +VSVL AC + +AL G T + AL
Sbjct: 410 ISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALL 469
Query: 319 ----------IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
IDMY + G I++SR +F + +K+L SWN +I+ YG
Sbjct: 470 MEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYG 515
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 158/329 (48%), Gaps = 54/329 (16%)
Query: 46 YEEIVNLFY-LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
Y + +++F L+ D D+F P V KAC+ D +G+ ++ +I +
Sbjct: 11 YSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGL-------- 62
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
LLD+F V N+LI Y K ++ + F + ++LVSW
Sbjct: 63 -LLDVF---------------------VGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSW 100
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
N++++G++ GF ++ ++L EM + + P+ +L VL CA+ V++G IHG
Sbjct: 101 NSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLA 160
Query: 225 LR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
++ + + + CG++ + +F++ + ++ V WN++I G + +A
Sbjct: 161 VKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAF 220
Query: 274 DLLRDV-IVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWNALIDM 321
+L R++ + +++ N VT++++LPACL+++ L G V N +
Sbjct: 221 NLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAA 280
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
Y +CG + + ++F M K + SWN +I
Sbjct: 281 YAKCGMLICAERVFYSMETKTVNSWNALI 309
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/364 (24%), Positives = 159/364 (43%), Gaps = 58/364 (15%)
Query: 14 CGVELCA--FLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKV 71
CG+ +CA S + +W +++G G + +NL+ M G+ PD F +
Sbjct: 284 CGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSL 343
Query: 72 YKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFL 131
A + LK R GK+V+ +++ E ++ + LL L+I CG LF+ M++
Sbjct: 344 LLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEE--- 400
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
K VSWNAM++GY+ G E+ L +++
Sbjct: 401 ---------------------------KSSVSWNAMISGYSQNGLPEDALILF--RKLVS 431
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-----------HHIHLSTACGFVIC 240
QP+ I++ VL AC+Q ++LGK H Y L+ I + G +
Sbjct: 432 DGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKE 491
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
S SVF+ L +D+ WN+II+A+ G ++++L + P+ T + +L C
Sbjct: 492 SRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSH 551
Query: 301 LAALPQGLGTGSFVWN------------ALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWN 347
+ +GL + + N ++DM GR G + + ++ MP + + W+
Sbjct: 552 AGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWS 611
Query: 348 VMIS 351
++S
Sbjct: 612 SLLS 615
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 98/238 (41%), Gaps = 53/238 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
+ G +VH ++ G+E+ +F+G LL ++ +W +M+
Sbjct: 353 LRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISG 412
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y+ G E+ + LF ++ G +P V ACS+ R+GK+ + Y +
Sbjct: 413 YSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALL--- 469
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ D+F+ C S ID YAK +K S F +K K
Sbjct: 470 ------MEDVFVAC---------------------STIDMYAKSGCIKESRSVFDGLKNK 502
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
DL SWNA++A Y + G EE L + M + P+ + G+L C+ V+ G
Sbjct: 503 DLASWNAIIAAYGVHGDGEESIELFERMR--KVGQMPDGFTFIGILTVCSHAGLVEEG 558
>gi|302142721|emb|CBI19924.3| unnamed protein product [Vitis vinifera]
Length = 912
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 101/393 (25%), Positives = 181/393 (46%), Gaps = 48/393 (12%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYN 41
L Q+H ++ G LGS L++++ +W ++ Y
Sbjct: 179 LSKQIHGLIVKYGFCWNVILGSSLVDIYGKCRVMSDARRMFDEIENPNAISWNVIVRRYL 238
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+G +E V +F+ MI +RP +F ACS + + G ++ I I ++ +
Sbjct: 239 EMGNEKEAVVMFFKMIRANIRPLNFTFSNALIACSSISALQEGIQIHGVAIRIGYDEDEV 298
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKIKQKD 160
V L+D++ KCG +E +FE L++ S++ YA + + F ++ ++
Sbjct: 299 VSSSLIDMYAKCGDLESACRIFELPSSKNLISWTSIVSGYAMSGQTREARVLFDEMPERS 358
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
++SWNAMLAGY EE + M D+ T+ L +L CA + V+ GK +
Sbjct: 359 VISWNAMLAGYTHFCQWEEALEFVFLMRKATQDIDHVTVGL--ILNVCAGLSDVESGKQV 416
Query: 221 HGYVLRHH-----------IHLSTACGFVICSCSVFNQLST-RDVVVWNSIISAFVRSGQ 268
HG++ RH +H+ CG + + F Q+S RD + WN+++++ R G
Sbjct: 417 HGFIYRHGLYSNLFVGNALLHMYGKCGNLRSTRLWFYQMSHWRDRISWNALLTSHARHGL 476
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNA 317
+A+ + + + P+ T+ ++L AC + AL QG F+ A
Sbjct: 477 SEEAMTIFGE-MQWETTPSKFTLGTLLSACANIFALEQGKQIHGFMIRNGYEIDVVARGA 535
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
L+DMY +C ++ + K+F P ++L+ WN MI
Sbjct: 536 LVDMYSKCRCLEYALKVFKEAPSRDLILWNSMI 568
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 127/254 (50%), Gaps = 25/254 (9%)
Query: 123 FEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTN 182
F FL+N + I+ Y KC L + F ++ Q+D SWNAM+ YA GG E+
Sbjct: 89 FSPAPPIFLLNRA-IETYGKCSCLDDARELFEEMPQRDGGSWNAMITAYAQGGCAEKALW 147
Query: 183 LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH----HIHLSTACGFV 238
L M + + N I+ + VL +CA V + L K IHG ++++ ++ L ++ +
Sbjct: 148 LFSRMNRL--GIWANEITFASVLGSCATVLALFLSKQIHGLIVKYGFCWNVILGSSLVDI 205
Query: 239 ICSCSV-------FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI 291
C V F+++ + + WN I+ ++ G +A+ + +I AN++P T
Sbjct: 206 YGKCRVMSDARRMFDEIENPNAISWNVIVRRYLEMGNEKEAVVMFFKMIRANIRPLNFTF 265
Query: 292 VSVLPACLKLAALPQGL-----------GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340
+ L AC ++AL +G+ V ++LIDMY +CG ++ + +IF L
Sbjct: 266 SNALIACSSISALQEGIQIHGVAIRIGYDEDEVVSSSLIDMYAKCGDLESACRIFELPSS 325
Query: 341 KNLVSWNVMISVYG 354
KNL+SW ++S Y
Sbjct: 326 KNLISWTSIVSGYA 339
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 149/342 (43%), Gaps = 65/342 (19%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y +EE + +LM DH + C+ L D GK V+ ++
Sbjct: 361 SWNAMLAGYTHFCQWEEALEFVFLMRKATQDIDHVTVGLILNVCAGLSDVESGKQVHGFI 420
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
R + S LF V N+L+ Y KC L+ +
Sbjct: 421 Y----------------------RHGLYSNLF--------VGNALLHMYGKCGNLRSTRL 450
Query: 152 KFSKIKQ-KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ +D +SWNA+L +A G EE + EM Q + P+ +L +L+ACA
Sbjct: 451 WFYQMSHWRDRISWNALLTSHARHGLSEEAMTIFGEM---QWETTPSKFTLGTLLSACAN 507
Query: 211 VKGVKLGKAIHGYVLRHHIHLST-ACGFVI-----CSC-----SVFNQLSTRDVVVWNSI 259
+ ++ GK IHG+++R+ + A G ++ C C VF + +RD+++WNS+
Sbjct: 508 IFALEQGKQIHGFMIRNGYEIDVVARGALVDMYSKCRCLEYALKVFKEAPSRDLILWNSM 567
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL--KLAALPQGLGTGSFV--- 314
I +G+ D L L + VKP+ +T +L C+ LA GLGT F
Sbjct: 568 ILGCCHNGRGRDVLGLFGLMEEEGVKPDHITFQGILLGCICEGLA----GLGTEYFNSMS 623
Query: 315 -----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
+ ++I++YGR G + + MP + V+
Sbjct: 624 NKYCIIPRLEHYESMIELYGRHGFMDELEDFIKRMPFEPTVA 665
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/377 (22%), Positives = 152/377 (40%), Gaps = 86/377 (22%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G E+ + LF M G+ + V +C+ + + K ++ +
Sbjct: 128 SWNAMITAYAQGGCAEKALWLFSRMNRLGIWANEITFASVLGSCATVLALFLSKQIHGLI 187
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F N + L+D++ KC M +F+E
Sbjct: 188 VKYGFCWNVILGSSLVDIYGKCRVMSDARRMFDE-------------------------- 221
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
I+ + +SWN ++ Y G +E + +MI+ +++P + S L AC+ +
Sbjct: 222 ----IENPNAISWNVIVRRYLEMGNEKEAVVMF--FKMIRANIRPLNFTFSNALIACSSI 275
Query: 212 KGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ G IHG +R I + CG + +C +F S+++++ W SI+
Sbjct: 276 SALQEGIQIHGVAIRIGYDEDEVVSSSLIDMYAKCGDLESACRIFELPSSKNLISWTSIV 335
Query: 261 SAFVRSGQVVDALDLL-----RDVIVANV--------------------------KPNTV 289
S + SGQ +A L R VI N + V
Sbjct: 336 SGYAMSGQTREARVLFDEMPERSVISWNAMLAGYTHFCQWEEALEFVFLMRKATQDIDHV 395
Query: 290 TIVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLM 338
T+ +L C L+ + GL + FV NAL+ MYG+CG ++ +R F M
Sbjct: 396 TVGLILNVCAGLSDVESGKQVHGFIYRHGLYSNLFVGNALLHMYGKCGNLRSTRLWFYQM 455
Query: 339 PH-KNLVSWNVMISVYG 354
H ++ +SWN +++ +
Sbjct: 456 SHWRDRISWNALLTSHA 472
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 91/230 (39%), Gaps = 55/230 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF----------------------CNWTSMMG 38
+E G QVH + G+ F+G+ LL ++ +W +++
Sbjct: 410 VESGKQVHGFIYRHGLYSNLFVGNALLHMYGKCGNLRSTRLWFYQMSHWRDRISWNALLT 469
Query: 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
+ G EE + +F M P F + AC+ + GK ++ +MI +E
Sbjct: 470 SHARHGLSEEAMTIFGEM-QWETTPSKFTLGTLLSACANIFALEQGKQIHGFMIRNGYEI 528
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
+ + L+D++ KC +E YA LKV F +
Sbjct: 529 DVVARGALVDMYSKCRCLE----------------------YA----LKV----FKEAPS 558
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
+DL+ WN+M+ G G +V L ME + ++P+ I+ G+L C
Sbjct: 559 RDLILWNSMILGCCHNGRGRDVLGLFGLME--EEGVKPDHITFQGILLGC 606
>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 953
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 91/360 (25%), Positives = 170/360 (47%), Gaps = 27/360 (7%)
Query: 16 VELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKAC 75
VE C L + W++++ + YEE + F M GV D V AC
Sbjct: 327 VEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSAC 386
Query: 76 SELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNN 134
+ L +GK ++ + I E ++ L+ ++ KCG + + LF+E D + N
Sbjct: 387 ANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWN 446
Query: 135 SLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDM 194
S+I Y KC + + F + +KD+VSW++M++GYA +E L EM+M +
Sbjct: 447 SMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQM--SGF 504
Query: 195 QPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCS 243
+P+ +L V++ACA++ ++ GK +H Y+ R+ I + CG V +
Sbjct: 505 KPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALE 564
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
VF + + + WN++I +G V +LD+ ++ +V PN +T + VL AC +
Sbjct: 565 VFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGL 624
Query: 304 LPQG------------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ +G + + ++D+ GR G +Q++ ++ MP ++ +W ++
Sbjct: 625 VDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALL 684
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 76/314 (24%), Positives = 132/314 (42%), Gaps = 71/314 (22%)
Query: 51 NLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLF 110
L+ M+ + D++ P + +ACS + K V+++++ + F
Sbjct: 199 TLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGF-------------- 244
Query: 111 IKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAG 170
D D V N+LI+ ++ C + + F++ D VSWN++LAG
Sbjct: 245 ----------------DSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAG 288
Query: 171 YALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH 230
Y G EE ++ +M + I L G+
Sbjct: 289 YIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMR------------------------- 323
Query: 231 LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
G V+ +C +F+++ +D+V W+++I+ F ++ +A+ + V + V
Sbjct: 324 -----GLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVV 378
Query: 291 IVSVLPACLKLAALPQG---------LGTGSFV--WNALIDMYGRCGAIQKSRKIFVLMP 339
VS L AC L + G +GT S++ NALI MY +CG I +RK+F
Sbjct: 379 AVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAY 438
Query: 340 HKNLVSWNVMISVY 353
+L+SWN MIS Y
Sbjct: 439 LLDLISWNSMISGY 452
>gi|148906116|gb|ABR16216.1| unknown [Picea sitchensis]
Length = 394
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 108/395 (27%), Positives = 173/395 (43%), Gaps = 111/395 (28%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNVLG 44
QVHAH+++ G+ + ++LL ++ W M+G Y G
Sbjct: 32 QVHAHMLLTGILRIPSVETKLLNLYVKCGSLPDARLAFDNMTKGDVFPWNVMIGGYVKHG 91
Query: 45 YYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
E + L++ M PD++ V AC+ L GK +YD +IS C
Sbjct: 92 ETREALELYHQMQKVSSTNPDNYTYSSVLNACARLASLSEGKLIYDEIIS-----KGC-- 144
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
+ D +V N+LI+ + KC ++ + F K+ +++LVS
Sbjct: 145 -----------------------EMDVIVENALINMFMKCGSIEDARRVFDKMCERNLVS 181
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
W AM++GYA GGF +E + EM+ D++ N ++++ VL ACAQ+ ++ GK IHGY
Sbjct: 182 WTAMVSGYAQGGFADEALRMFYEMQ--GEDVKANYVTVASVLPACAQLSDLQQGKEIHGY 239
Query: 224 VLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
++R + L CG + + VF+++ RDVV WN I+ + ++G+ +
Sbjct: 240 IIRRGLDLGIVVGNALIDMYAKCGSIGSAQKVFDKMLQRDVVSWNVAIAGYAQNGRFDEC 299
Query: 273 LDLLR---------DVIVAN--------------------------VKPNTVTIVSVLPA 297
++L R DVI N VKPN++TI SVL A
Sbjct: 300 MELFRKMQCAGLKIDVITWNTLITAYAQNGYGDQTLELFQQMQLRGVKPNSITIASVLSA 359
Query: 298 CLKLAALPQGLGTGSF-----------VWNALIDM 321
C ++AL +G V NALIDM
Sbjct: 360 CAAVSALQEGKRIHDLVNRSECKSDICVGNALIDM 394
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 127/245 (51%), Gaps = 23/245 (9%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V L++ Y KC L + F + + D+ WN M+ GY G E L +M+ +
Sbjct: 48 VETKLLNLYVKCGSLPDARLAFDNMTKGDVFPWNVMIGGYVKHGETREALELYHQMQKVS 107
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVIC 240
+ P+ + S VL ACA++ + GK I+ ++ I++ CG +
Sbjct: 108 S-TNPDNYTYSSVLNACARLASLSEGKLIYDEIISKGCEMDVIVENALINMFMKCGSIED 166
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ VF+++ R++V W +++S + + G +AL + ++ +VK N VT+ SVLPAC +
Sbjct: 167 ARRVFDKMCERNLVSWTAMVSGYAQGGFADEALRMFYEMQGEDVKANYVTVASVLPACAQ 226
Query: 301 LAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L+ L QG L G V NALIDMY +CG+I ++K+F M +++VSWNV
Sbjct: 227 LSDLQQGKEIHGYIIRRGLDLGIVVGNALIDMYAKCGSIGSAQKVFDKMLQRDVVSWNVA 286
Query: 350 ISVYG 354
I+ Y
Sbjct: 287 IAGYA 291
>gi|255543449|ref|XP_002512787.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547798|gb|EEF49290.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 480
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 160/333 (48%), Gaps = 26/333 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W M+ YN G ++ + L+ LMI +G PD F P V KAC + GK+V+ + I
Sbjct: 98 WNFMIRAYNYNGNSQQALLLYNLMICEGFSPDKFTFPFVIKACLDHSALDKGKEVHGFAI 157
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHC 151
F + + L+DL+ KCG ++ LF++M +V+ + + C L +
Sbjct: 158 KTGFWKDTFLSNTLMDLYFKCGDLDYARKLFDKMAVRSVVSWTTFVAGLVACGELDTARA 217
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +++VSW AM+ GY +E L M++ +++PN +L G+L AC ++
Sbjct: 218 AFDEMPMRNVVSWTAMINGYVKNQRPQEAFELFQRMQL--ANVRPNGFTLVGLLRACTEL 275
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++LG+ IH Y L + I + + CG + + VF ++ + + WNS+I
Sbjct: 276 GSLELGRRIHEYALENGFKVGVFLGTALIDMYSKCGSIEDAKKVFEEMQKKSLATWNSMI 335
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
++ G +AL L + ANV+P+ +T V VL AC+ + G ++
Sbjct: 336 TSLGVHGFGKEALALFAQMEEANVRPDAITFVGVLFACVNTNNVEAGYRYFKYMTEHYGI 395
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMPHK 341
+ +I++Y R + + ++ MP K
Sbjct: 396 TPMLEHYTCMIELYTRAAMLNEVSELVNSMPMK 428
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 118/265 (44%), Gaps = 57/265 (21%)
Query: 145 YLKVSHCK--FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLS 202
Y KV + F +I+ +WN M+ Y G ++ LL MI P+ +
Sbjct: 77 YQKVDYATLIFDQIQNPHTFTWNFMIRAYNYNGNSQQA--LLLYNLMICEGFSPDKFTFP 134
Query: 203 GVLAACAQVKGVKLGKAIHGYVLRHHIHLST----------------------------- 233
V+ AC + GK +HG+ ++ T
Sbjct: 135 FVIKACLDHSALDKGKEVHGFAIKTGFWKDTFLSNTLMDLYFKCGDLDYARKLFDKMAVR 194
Query: 234 -------------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280
ACG + + + F+++ R+VV W ++I+ +V++ + +A +L + +
Sbjct: 195 SVVSWTTFVAGLVACGELDTARAAFDEMPMRNVVSWTAMINGYVKNQRPQEAFELFQRMQ 254
Query: 281 VANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQ 329
+ANV+PN T+V +L AC +L AL G G F+ ALIDMY +CG+I+
Sbjct: 255 LANVRPNGFTLVGLLRACTELGSLELGRRIHEYALENGFKVGVFLGTALIDMYSKCGSIE 314
Query: 330 KSRKIFVLMPHKNLVSWNVMISVYG 354
++K+F M K+L +WN MI+ G
Sbjct: 315 DAKKVFEEMQKKSLATWNSMITSLG 339
Score = 44.3 bits (103), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 30/152 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
+ELG ++H + + G ++ FLG+ L++++ W SM+
Sbjct: 278 LELGRRIHEYALENGFKVGVFLGTALIDMYSKCGSIEDAKKVFEEMQKKSLATWNSMITS 337
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM-----ISI 94
V G+ +E + LF M + VRPD V AC + G + YM I+
Sbjct: 338 LGVHGFGKEALALFAQMEEANVRPDAITFVGVLFACVNTNNVEAGYRYFKYMTEHYGITP 397
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126
E C +++L+ + + S L M
Sbjct: 398 MLEHYTC----MIELYTRAAMLNEVSELVNSM 425
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 158/330 (47%), Gaps = 70/330 (21%)
Query: 60 GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEIT 119
G +PD++ P ++KAC+ L R+G ++ +++ + F
Sbjct: 74 GTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGF----------------------- 110
Query: 120 SGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREE 179
D D V+N++I C L + F K +DLVSWN+M+ GY G+ E
Sbjct: 111 -------DSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYE 163
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA----- 234
N EM++ ++P+ +++ GV+++CAQ++ + LG+ H Y+ + + L+
Sbjct: 164 ALNFYREMKV--EGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANAL 221
Query: 235 ------CG----------------FVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
CG V + +F+++ +DVV WN++I +V + + +A
Sbjct: 222 MDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEA 281
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNALIDM 321
L L ++ N+ P+ VT+VS L AC +L AL G+ ++ ALIDM
Sbjct: 282 LALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDM 341
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
Y +CG I K+ ++F +P +N ++W +IS
Sbjct: 342 YAKCGKITKAIQVFQELPGRNSLTWTAIIS 371
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 164/342 (47%), Gaps = 40/342 (11%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y G+ E +N + M +G++PD V +C++L+D +G++ + Y+
Sbjct: 147 SWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYI 206
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + L+D+++KCG +E LF+ M +V+ + +
Sbjct: 207 EENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTM-------------- 252
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ KD+V WNAM+ GY +E L +EM+ + ++ P+ +++ L+AC+Q+
Sbjct: 253 LFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAM--NINPDEVTMVSCLSACSQL 310
Query: 212 KGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ +G IH Y+ +H + L+ A CG + + VF +L R+ + W +II
Sbjct: 311 GALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAII 370
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
S G A+ ++I +V P+ VT + +L AC + +G S +
Sbjct: 371 SGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNL 430
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVM 349
++ ++D+ GR G ++++ ++ MP + V W +
Sbjct: 431 SPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGAL 472
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 124/248 (50%), Gaps = 27/248 (10%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCK--FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
+D ++ LI F A + + +C + + SWN + G+ E L
Sbjct: 8 EDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYK 67
Query: 186 EMEMIQTD-MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLST 233
+ +Q D +P+ + + ACA++ +++G I G+VL IHL
Sbjct: 68 RV--LQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLV 125
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
+CG + + +F++ RD+V WNS+I+ +VR G +AL+ R++ V +KP+ VT++
Sbjct: 126 SCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIG 185
Query: 294 VLPACLKLAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKN 342
V+ +C +L L G + ++ NAL+DMY +CG ++ +RK+F M +K
Sbjct: 186 VVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKT 245
Query: 343 LVSWNVMI 350
+VSW M+
Sbjct: 246 MVSWTTML 253
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 13/126 (10%)
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPAC 298
C+ +FN + + WN I F+ S +A+ L + V+ + KP+ T + AC
Sbjct: 31 CTNILFNTRNP-NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKAC 89
Query: 299 LKLAALPQG---------LGTGS--FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
+L+ + G LG S FV NA+I + CG + +RK+F ++LVSWN
Sbjct: 90 ARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWN 149
Query: 348 VMISVY 353
MI+ Y
Sbjct: 150 SMINGY 155
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 105/398 (26%), Positives = 178/398 (44%), Gaps = 53/398 (13%)
Query: 6 QVHAHLIVCGVELCAF---------------LGSQLLEVFCN--------WTSMMGMYNV 42
QVHAH+I G+ C++ +GS L VF WT+M+ Y +
Sbjct: 60 QVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYAL 119
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIK-FEGNAC 101
G E N + M GV P F ++KAC + +GK V+ I I F +
Sbjct: 120 QGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLY 179
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
V ++DL++KCG + +F+EM ++D + LI YAK ++ + F + KD
Sbjct: 180 VGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKD 239
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+V+W AM+ GYA G +E +M+ + M+ + ++L+GV++ACAQ+ VK I
Sbjct: 240 MVAWTAMVTGYAQNGRPKEALEYFQKMQDV--GMETDEVTLAGVISACAQLGAVKHANWI 297
Query: 221 HGYVLRHH-------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
R I + + CG + VF + R+V ++S+I + G
Sbjct: 298 RDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHG 357
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GLGTGSFVW 315
+ AL L D++ ++PN VT + +L AC + Q G+ +
Sbjct: 358 RAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHY 417
Query: 316 NALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
++D+ GR G ++++ + MP N W ++
Sbjct: 418 ACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGA 455
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 109/257 (42%), Gaps = 58/257 (22%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ + W AM+ GYAL G E TN M + + P + + S + AC
Sbjct: 99 FGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMR--RDGVGPVSFTFSALFKACGAAL 156
Query: 213 GVKLGKAIHG------------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ LGK +H YV I L CGF+ C+ VF+++S RDVV W +I
Sbjct: 157 NMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELI 216
Query: 261 SAFVRSGQVVDALDLLRDV--------------IVANVKP-----------------NTV 289
A+ + G + A L D+ N +P + V
Sbjct: 217 VAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEV 276
Query: 290 TIVSVLPACLKLAALPQ-----------GLGTGS--FVWNALIDMYGRCGAIQKSRKIFV 336
T+ V+ AC +L A+ G G V +ALIDMY +CG+ ++ K+F
Sbjct: 277 TLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFE 336
Query: 337 LMPHKNLVSWNVMISVY 353
+M +N+ S++ MI Y
Sbjct: 337 VMKERNVFSYSSMILGY 353
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 94/219 (42%), Gaps = 42/219 (19%)
Query: 175 GFREEVTNL--LDEMEMIQTDMQPNTIS--------------LSGVLAAC---AQVKGV- 214
GF ++ + L ++ +QT PN I L +L C +Q+K V
Sbjct: 3 GFSRNLSTVSKLSHLQNLQTRGSPNFIPFPQLQHQRKLLEWRLMSILHDCTLFSQIKQVH 62
Query: 215 ----KLGKAIHGYVLRHHIHLSTACGFVICSCS--VFNQLSTRDVVVWNSIISAFVRSGQ 268
+ G + YVL I + T + S VF Q++ + +W ++I + G
Sbjct: 63 AHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYALQGL 122
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGT---------GSF-----V 314
+ ++ + + V P + T ++ AC AAL LG G F V
Sbjct: 123 LSESTNFYTRMRRDGVGPVSFTFSALFKACG--AALNMDLGKQVHAQTILIGGFASDLYV 180
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
N++ID+Y +CG + +RK+F M +++VSW +I Y
Sbjct: 181 GNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAY 219
>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 697
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 96/405 (23%), Positives = 190/405 (46%), Gaps = 55/405 (13%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
M G+Q+H+ + ++GS L++++ +W S++
Sbjct: 168 MNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITC 227
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI-KFEG 98
Y G E + +F +M++ V PD V AC+ L +VG++V+ ++ + K
Sbjct: 228 YEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRN 287
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
+ + +D++ KC R++ +F+ M ++ + S++ YA K + F+K+
Sbjct: 288 DIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMA 347
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
++++VSWNA++AGY G EE +L ++ + + P + + +L ACA + + LG
Sbjct: 348 ERNVVSWNALIAGYTQNGENEEALSLFCLLK--RESVCPTHYTFANILKACADLADLHLG 405
Query: 218 KAIHGYVLRHH-----------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
H +VL+H I + CG V VF ++ RD V WN++I
Sbjct: 406 MQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMI 465
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
F ++G +AL+L R+++ + KP+ +T++ VL AC + +G S +
Sbjct: 466 IGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGV 525
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ ++D+ GR G +++++ I MP + V W +++
Sbjct: 526 APLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAA 570
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 145/292 (49%), Gaps = 26/292 (8%)
Query: 87 VYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRY 145
V+ +I F ++ L+D + KCG +E LF++M Q + NS++ K +
Sbjct: 42 VHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGF 101
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
L + F + ++D +WN+M++G+A EE M + N + + L
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMH--KEGFVLNEYTFASGL 159
Query: 206 AACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVV 254
+AC+ + + G IH Y+ + + + CG V + VF+++ R+VV
Sbjct: 160 SACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVV 219
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------- 307
WNS+I+ + ++G V+AL + + ++ + V+P+ VT+ SV+ AC L+A+ G
Sbjct: 220 SWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARV 279
Query: 308 -----LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L + NA +DMY +C I+++R IF MP +N+++ M+S Y
Sbjct: 280 VKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYA 331
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 89/380 (23%), Positives = 159/380 (41%), Gaps = 92/380 (24%)
Query: 31 CNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
C W SM+ + EE + F +M +G + + ACS L D G ++
Sbjct: 118 CTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSL 177
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ + + L+D++ KCG + +F+EM
Sbjct: 178 IAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMG----------------------- 214
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+++VSWN+++ Y G E + M+++ ++P+ ++L+ V++ACA
Sbjct: 215 -------DRNVVSWNSLITCYEQNGPAVEALKVF--QVMLESWVEPDEVTLASVISACAS 265
Query: 211 VKGVKLGKAIHGYV-----LRHHIHLSTACGFVICSCS---------------------- 243
+ +K+G+ +H V LR+ I LS A + CS
Sbjct: 266 LSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETS 325
Query: 244 ----------------VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
+F +++ R+VV WN++I+ + ++G+ +AL L + +V P
Sbjct: 326 MVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPT 385
Query: 288 TVTIVSVLPACLKLAALPQGL-------------GTGS----FVWNALIDMYGRCGAIQK 330
T ++L AC LA L G+ +G FV N+LIDMY +CG +++
Sbjct: 386 HYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEE 445
Query: 331 SRKIFVLMPHKNLVSWNVMI 350
+F M ++ VSWN MI
Sbjct: 446 GYLVFRKMMERDCVSWNAMI 465
>gi|225439799|ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37310-like [Vitis vinifera]
Length = 667
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 147/280 (52%), Gaps = 15/280 (5%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-GVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W SM+ Y+ G+YE+ L+ M+D G+RP+ V +AC++ D G V+ +
Sbjct: 207 SWNSMIAGYSQGGFYEDCKELYRKMLDSTGLRPNGVTVVSVLQACAQTNDLVFGMKVHQF 266
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVS 149
+I K E + L+ L+ KCG ++ LF EM ++D + S++ Y ++ +
Sbjct: 267 IIERKVEMDVSAHNSLIGLYAKCGSLDYARELFNEMSNKDEVTYGSIVSGYMTHGFVDKA 326
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F ++K L +WNA+++G E + L+ EM+ + +PN ++LS +L +
Sbjct: 327 MDLFREMKNPRLSTWNAVISGLVQNNCNEGILELVQEMQ--EFGFRPNAVTLSSILPTFS 384
Query: 210 QVKGVKLGKAIHGYVLR----HHIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNS 258
+K GKAIH Y +R H+I+++T+ GF+ + VF+Q R ++VW +
Sbjct: 385 CFSNLKGGKAIHAYAIRNGYAHNIYVATSIIDAYAKLGFLRGAQWVFDQSKDRSLIVWTA 444
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
IISA+ G AL L D++ +P+ VT +VL AC
Sbjct: 445 IISAYSAHGDANAALRLFGDMLSNGTQPDPVTFTAVLAAC 484
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 134/280 (47%), Gaps = 54/280 (19%)
Query: 127 DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDE 186
D D V N+LI +Y++C ++ F ++ +D+VSWN+M+AGY+ GGF E+ L +
Sbjct: 171 DSDIFVVNALITYYSRCDEYGIARILFDRMHDRDIVSWNSMIAGYSQGGFYEDCKELYRK 230
Query: 187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA-----------C 235
M + T ++PN +++ VL ACAQ + G +H +++ + + + C
Sbjct: 231 M-LDSTGLRPNGVTVVSVLQACAQTNDLVFGMKVHQFIIERKVEMDVSAHNSLIGLYAKC 289
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV--------------IV 281
G + + +FN++S +D V + SI+S ++ G V A+DL R++ +V
Sbjct: 290 GSLDYARELFNEMSNKDEVTYGSIVSGYMTHGFVDKAMDLFREMKNPRLSTWNAVISGLV 349
Query: 282 AN-----------------VKPNTVTIVSVLPA-----------CLKLAALPQGLGTGSF 313
N +PN VT+ S+LP + A+ G +
Sbjct: 350 QNNCNEGILELVQEMQEFGFRPNAVTLSSILPTFSCFSNLKGGKAIHAYAIRNGYAHNIY 409
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V ++ID Y + G ++ ++ +F ++L+ W +IS Y
Sbjct: 410 VATSIIDAYAKLGFLRGAQWVFDQSKDRSLIVWTAIISAY 449
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 129/257 (50%), Gaps = 25/257 (9%)
Query: 122 LFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFR-EEV 180
+ + D + + LI FY+K +L +H F KI K++ SWNAML GY++ +
Sbjct: 61 VLSSLTPDNFLASKLITFYSKSNHLYEAHKVFDKILDKNIFSWNAMLIGYSIHNMHVHTL 120
Query: 181 TNLLDEMEMIQTDMQPNTISLSGVLAACAQV-KGVKLGKAIHGYVLRHH----------- 228
L + ++P+ +++ VL A + + L K + +VLRH
Sbjct: 121 NLLSSLLPSYSLTLKPDNFTITCVLKALSVLFPDSILAKEVQCFVLRHGFDSDIFVVNAL 180
Query: 229 IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN-VKPN 287
I + C + +F+++ RD+V WNS+I+ + + G D +L R ++ + ++PN
Sbjct: 181 ITYYSRCDEYGIARILFDRMHDRDIVSWNSMIAGYSQGGFYEDCKELYRKMLDSTGLRPN 240
Query: 288 TVTIVSVLPACLKLAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFV 336
VT+VSVL AC + L G+ F+ N+LI +Y +CG++ +R++F
Sbjct: 241 GVTVVSVLQACAQTNDLVFGMKVHQFIIERKVEMDVSAHNSLIGLYAKCGSLDYARELFN 300
Query: 337 LMPHKNLVSWNVMISVY 353
M +K+ V++ ++S Y
Sbjct: 301 EMSNKDEVTYGSIVSGY 317
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 7/125 (5%)
Query: 91 MISIKFEGNACVKRPLLDLF-----IKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRY 145
M F NA +L F +K G+ + + V S+ID YAK +
Sbjct: 364 MQEFGFRPNAVTLSSILPTFSCFSNLKGGKAIHAYAIRNGYAHNIYVATSIIDAYAKLGF 423
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
L+ + F + K + L+ W A+++ Y+ G L +M + QP+ ++ + VL
Sbjct: 424 LRGAQWVFDQSKDRSLIVWTAIISAYSAHGDANAALRLFGDM--LSNGTQPDPVTFTAVL 481
Query: 206 AACAQ 210
AACA
Sbjct: 482 AACAH 486
>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 597
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/340 (28%), Positives = 167/340 (49%), Gaps = 54/340 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +++ Y G EE + L+ M G+ PD++ P V ++C+ L R GK+V+ ++
Sbjct: 96 WNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIV 155
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F D D V +SL+ Y++
Sbjct: 156 KHGF------------------------------DSDVFVQSSLVAMYSQSGETLGMELV 185
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ +++VSW A++AGY + +E + EM+ + QPN ++L VL ACA ++
Sbjct: 186 FGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVF--REMVGSGTQPNAVTLVSVLPACAGLE 243
Query: 213 GVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ LGK IHGY ++ + L+ A CG V + S+F+ + +++V WN++I+
Sbjct: 244 FLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIA 303
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGT 310
A+ ++ +A+ L R + V + +T+VSV+ AC L AL +GL
Sbjct: 304 AYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEI 363
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ NALIDMY +CG I +R++F +P +++VSW MI
Sbjct: 364 NVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMI 403
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 128/250 (51%), Gaps = 27/250 (10%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCK--FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
Q+ L++ LI A C + + + F ++ ++D+ WN ++ GYA G EE L
Sbjct: 59 QNLLLSTKLI-ITACCLAPTMDYARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYS 117
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTA 234
M + P+ + V+ +CA + ++ GK +H +++H + + +
Sbjct: 118 NMH--GAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQ 175
Query: 235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV 294
G + VF ++ R++V W ++I+ +V++ + L + R+++ + +PN VT+VSV
Sbjct: 176 SGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSV 235
Query: 295 LPAC-----LKLAALPQGLGTGSFV------WNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
LPAC L L L G G V NALI +YG+CG ++ +R +F M +NL
Sbjct: 236 LPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNL 295
Query: 344 VSWNVMISVY 353
VSWN MI+ Y
Sbjct: 296 VSWNAMIAAY 305
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 87/360 (24%), Positives = 153/360 (42%), Gaps = 58/360 (16%)
Query: 15 GVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKA 74
G+EL G ++ +WT+++ Y Y++E + +F M+ G +P+ V A
Sbjct: 181 GMELV--FGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPA 238
Query: 75 CSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNN 134
C+ L+ +GK ++ Y I + +D D + N
Sbjct: 239 CAGLEFLNLGKLIHGYGIKLG------------------------------VDPDVSLTN 268
Query: 135 SLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDM 194
+LI Y KC ++ + F + ++LVSWNAM+A Y L M+ + D
Sbjct: 269 ALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDF 328
Query: 195 QPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCS 243
+ I++ V++ACA + + G+ +H V R + ++ + CG + +
Sbjct: 329 --DYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLARE 386
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
VF +L R VV W S+I A G DAL L + VKPN+ T +V AC
Sbjct: 387 VFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGL 446
Query: 304 LPQG------------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMI 350
+ +G + G ++D+ GR G++ ++ + MP + VS W ++
Sbjct: 447 VEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALL 506
>gi|15226737|ref|NP_181604.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75276036|sp|Q7XJN6.1|PP197_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g40720
gi|330254774|gb|AEC09868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 860
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 162/344 (47%), Gaps = 52/344 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y Y ++LF M K V PD F V CS L Y GK V+ +
Sbjct: 341 WNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELF 400
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ + ++ LL L+ KCG D D ++
Sbjct: 401 KRPIQSTSTIESALLTLYSKCG-----------CDPD-------------------AYLV 430
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F +++KD+V+W ++++G G +E + +M+ ++P++ ++ V ACA ++
Sbjct: 431 FKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLE 490
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ G +HG +++ I L + CG + VF +ST ++V WNS+IS
Sbjct: 491 ALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMIS 550
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGT 310
+ R+ ++DL ++ + P++V+I SVL A A+L + G+ +
Sbjct: 551 CYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPS 610
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + NALIDMY +CG + + IF M HK+L++WN+MI YG
Sbjct: 611 DTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYG 654
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/353 (23%), Positives = 159/353 (45%), Gaps = 59/353 (16%)
Query: 14 CGVELCAFLGSQLLEV--FCNWTSMMGMYNVLGYYEEIVNLFYLMIDK--GVRPDHFVCP 69
CG + A+L + +E W S++ G ++E + +F M D ++PD +
Sbjct: 421 CGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMT 480
Query: 70 KVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQD 129
V AC+ L+ R G V+ MI +L++F
Sbjct: 481 SVTNACAGLEALRFGLQVHGSMIKTGL---------VLNVF------------------- 512
Query: 130 FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
V +SLID Y+KC +++ F+ + +++V+WN+M++ Y+ E +L + M
Sbjct: 513 --VGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLM-- 568
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI----HLSTA-------CGFV 238
+ + P+++S++ VL A + + GK++HGY LR I HL A CGF
Sbjct: 569 LSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFS 628
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ ++F ++ + ++ WN +I + G + AL L ++ A P+ VT +S++ AC
Sbjct: 629 KYAENIFKKMQHKSLITWNLMIYGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISAC 688
Query: 299 LKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFVLMP 339
+ +G F+ + ++D+ GR G ++++ MP
Sbjct: 689 NHSGFVEEGKNIFEFMKQDYGIEPNMEHYANMVDLLGRAGLLEEAYSFIKAMP 741
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 150/343 (43%), Gaps = 55/343 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYR--VGKDVYDY 90
W SM+ Y ++E V F M+ GVRPD F V + ++R GK ++ +
Sbjct: 136 WNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGF 195
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
M+ + ++ +K L+D++ K G +F E++
Sbjct: 196 MLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIED---------------------- 233
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+ ++V WN M+ G+ G E +L M ++ + S +G L AC+Q
Sbjct: 234 -------KSNVVLWNVMIVGFGGSGICESSLDLY--MLAKNNSVKLVSTSFTGALGACSQ 284
Query: 211 VKGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ G+ IH V++ +H + + CG V + +VF+ + + + +WN++
Sbjct: 285 SENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAM 344
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------L 308
++A+ + ALDL + +V P++ T+ +V+ C L G +
Sbjct: 345 VAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPI 404
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ S + +AL+ +Y +CG + +F M K++V+W +IS
Sbjct: 405 QSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLIS 447
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 137/315 (43%), Gaps = 52/315 (16%)
Query: 66 FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEE 125
F P + KACS L + GK ++ ++ + + + + L+++++KCG ++ +F+
Sbjct: 61 FTFPSLLKACSALTNLSYGKTIHGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDG 120
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGY-ALGGFREEVTNLL 184
Q S + +D+ WN+M+ GY F+E V
Sbjct: 121 WSQ-----------------------SQSGVSARDVTVWNSMIDGYFKFRRFKEGVGCF- 156
Query: 185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKL--GKAIHGYVLRHHIH----LSTAC--- 235
M+ ++P+ SLS V++ + + GK IHG++LR+ + L TA
Sbjct: 157 --RRMLVFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGFMLRNSLDTDSFLKTALIDM 214
Query: 236 ----GFVICSCSVFNQLSTR-DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
G I + VF ++ + +VV+WN +I F SG +LDL +VK + +
Sbjct: 215 YFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYMLAKNNSVKLVSTS 274
Query: 291 IVSVLPAC-----------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
L AC + + GL +V +L+ MY +CG + ++ +F +
Sbjct: 275 FTGALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVV 334
Query: 340 HKNLVSWNVMISVYG 354
K L WN M++ Y
Sbjct: 335 DKRLEIWNAMVAAYA 349
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 104/249 (41%), Gaps = 53/249 (21%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+ G+QVH +I G+ L F+GS L++++ W SM+
Sbjct: 492 LRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMISC 551
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y+ E ++LF LM+ +G+ PD V A S GK ++ Y + + +
Sbjct: 552 YSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPSD 611
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+K L+D+++KCG + K + F K++ K
Sbjct: 612 THLKNALIDMYVKCG------------------------------FSKYAENIFKKMQHK 641
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
L++WN M+ GY G +L DEM+ + P+ ++ +++AC V+ GK
Sbjct: 642 SLITWNLMIYGYGSHGDCITALSLFDEMK--KAGESPDDVTFLSLISACNHSGFVEEGKN 699
Query: 220 IHGYVLRHH 228
I ++ + +
Sbjct: 700 IFEFMKQDY 708
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 32/190 (16%)
Query: 197 NTISLSGVLAACAQVKGVKLGKAIHGYVL----RHHIHLSTA-------CGFVICSCSVF 245
+ + +L AC+ + + GK IHG V+ R+ ++T+ CGF+ + VF
Sbjct: 59 SVFTFPSLLKACSALTNLSYGKTIHGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVF 118
Query: 246 N-------QLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ +S RDV VWNS+I + + + + + R ++V V+P+ ++ V+
Sbjct: 119 DGWSQSQSGVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVM 178
Query: 299 LKLA-------------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLV 344
K L L T SF+ ALIDMY + G + ++FV + K N+V
Sbjct: 179 CKEGNFRREEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVV 238
Query: 345 SWNVMISVYG 354
WNVMI +G
Sbjct: 239 LWNVMIVGFG 248
>gi|356567222|ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Glycine max]
Length = 887
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 166/345 (48%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +MM Y G Y E++ L M K ++ + A +E +D GK+V++Y
Sbjct: 295 SWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNKISVVNSVLAATETRDLEKGKEVHNYA 354
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + M D +V ++ YAKC LK +
Sbjct: 355 LQLG------------------------------MTSDIVVATPIVSMYAKCGELKKAKE 384
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +DLV W+A L+ G+ E ++ EM+ ++P+ LS +++ACA++
Sbjct: 385 FFLSLEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQ--HEGLKPDKTILSSLVSACAEI 442
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+LGK +H YV++ + + T C + + ++FN++ +DVV WN++I
Sbjct: 443 SSSRLGKMMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTLFNRMHYKDVVAWNTLI 502
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLG 309
+ F + G AL++ + ++ V+P++ T+VS+L AC L L G+
Sbjct: 503 NGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDDLYLGICFHGNIIKNGIE 562
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPH-KNLVSWNVMISVY 353
+ V ALIDMY +CG++ + +F L H K+ VSWNVMI+ Y
Sbjct: 563 SEMHVKVALIDMYAKCGSLCTAENLFHLNKHVKDEVSWNVMIAGY 607
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 83/345 (24%), Positives = 164/345 (47%), Gaps = 55/345 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W++ + GY E +++F M +G++PD + + AC+E+ R+GK ++ Y+I
Sbjct: 397 WSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAEISSSRLGKMMHCYVI 456
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+M D V +L+ Y +C+ +
Sbjct: 457 K------------------------------ADMGSDISVATTLVSMYTRCKSFMYAMTL 486
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+++ KD+V+WN ++ G+ G + +++ + +QP++ ++ +L+ACA +
Sbjct: 487 FNRMHYKDVVAWNTLINGFTKCGDPRLALEMFLRLQL--SGVQPDSGTMVSLLSACALLD 544
Query: 213 GVKLGKAIHGYVLRHHI----HLSTA-------CGFVICSCSVFN-QLSTRDVVVWNSII 260
+ LG HG ++++ I H+ A CG + + ++F+ +D V WN +I
Sbjct: 545 DLYLGICFHGNIIKNGIESEMHVKVALIDMYAKCGSLCTAENLFHLNKHVKDEVSWNVMI 604
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG----------- 309
+ ++ +G +A+ + + +V+PN VT V++LPA L+ L + +
Sbjct: 605 AGYLHNGCANEAISTFNQMKLESVRPNLVTFVTILPAVSYLSILREAMAFHACIIRMGFI 664
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + + N+LIDMY + G + S K F M +K +SWN M+S Y
Sbjct: 665 SSTLIGNSLIDMYAKSGQLSYSEKCFHEMENKGTISWNAMLSGYA 709
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 178/392 (45%), Gaps = 78/392 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G+ +H + +E F+G+ L++++C +W +M+ +
Sbjct: 146 GVAIHQDIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGLSQ 205
Query: 43 LGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
E + +F M +++GV PD + A S L+D K ++ Y+
Sbjct: 206 SSNPCEALEIFQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCKSIHGYV---------- 255
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
V+R + + V+NSLID Y+KC +K++H F ++ KD
Sbjct: 256 VRRCVFGV----------------------VSNSLIDMYSKCGEVKLAHQIFDQMWVKDD 293
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
+SW M+AGY G EV LLDEM+ M N IS+ + A + + ++ GK +H
Sbjct: 294 ISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKM--NKISVVNSVLAATETRDLEKGKEVH 351
Query: 222 GYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y L+ + + CG + + F L RD+VVW++ +SA V++G
Sbjct: 352 NYALQLGMTSDIVVATPIVSMYAKCGELKKAKEFFLSLEGRDLVVWSAFLSALVQAGYPG 411
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALI 319
+AL + +++ +KP+ + S++ AC ++++ G +G+ V L+
Sbjct: 412 EALSIFQEMQHEGLKPDKTILSSLVSACAEISSSRLGKMMHCYVIKADMGSDISVATTLV 471
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
MY RC + + +F M +K++V+WN +I+
Sbjct: 472 SMYTRCKSFMYAMTLFNRMHYKDVVAWNTLIN 503
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/370 (23%), Positives = 175/370 (47%), Gaps = 57/370 (15%)
Query: 5 IQVHAHLIV--CGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVR 62
+Q+HA LIV C + + L+ W S++ Y+ L ++E + + M G+
Sbjct: 69 LQIHARLIVQQCTLAPNSITNPSLIL----WNSLIRAYSRLHLFQEAIKSYQTMSYMGLE 124
Query: 63 PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGL 122
PD + V KAC+ D+ G ++ + S + E + + L+D++ K G ++ +
Sbjct: 125 PDKYTFTFVLKACTGALDFHEGVAIHQDIASRELECDVFIGTGLVDMYCKMGHLDNARKV 184
Query: 123 FEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTN 182
F+ K+ KD+ SWNAM++G + E
Sbjct: 185 FD------------------------------KMPGKDVASWNAMISGLSQSSNPCEALE 214
Query: 183 LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH---------HIHLST 233
+ M+M + ++P+++S+ + A ++++ V K+IHGYV+R I + +
Sbjct: 215 IFQRMQM-EEGVEPDSVSILNLAPAVSRLEDVDSCKSIHGYVVRRCVFGVVSNSLIDMYS 273
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
CG V + +F+Q+ +D + W ++++ +V G + L LL ++ ++K N +++V+
Sbjct: 274 KCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNKISVVN 333
Query: 294 VLPACLKLAALPQG---------LGTGS--FVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
+ A + L +G LG S V ++ MY +CG ++K+++ F+ + ++
Sbjct: 334 SVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKKAKEFFLSLEGRD 393
Query: 343 LVSWNVMISV 352
LV W+ +S
Sbjct: 394 LVVWSAFLSA 403
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 122/287 (42%), Gaps = 44/287 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +++ + G + +F + GV+PD + AC+ L D +G
Sbjct: 498 WNTLINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDDLYLG-------- 549
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
I F GN I +G+ EM V +LID YAKC L +
Sbjct: 550 -ICFHGNI-----------------IKNGIESEMH----VKVALIDMYAKCGSLCTAENL 587
Query: 153 FSKIKQ-KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K KD VSWN M+AGY G E + ++M++ ++PN ++ +L A + +
Sbjct: 588 FHLNKHVKDEVSWNVMIAGYLHNGCANEAISTFNQMKL--ESVRPNLVTFVTILPAVSYL 645
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVIC-----------SCSVFNQLSTRDVVVWNSII 260
++ A H ++R ST G + S F+++ + + WN+++
Sbjct: 646 SILREAMAFHACIIRMGFISSTLIGNSLIDMYAKSGQLSYSEKCFHEMENKGTISWNAML 705
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
S + GQ AL L + +V ++V+ +SVL AC + +G
Sbjct: 706 SGYAMHGQGEVALALFSLMQETHVPVDSVSYISVLSACRHAGLIQEG 752
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 113/244 (46%), Gaps = 30/244 (12%)
Query: 134 NSLIDFYAKCRYLKVSHCKFS--KIKQKDLVSWNAMLAGYA-LGGFREEVTNLLDEMEMI 190
N L+ +A+ L V C + I L+ WN+++ Y+ L F+E + + M
Sbjct: 66 NPLLQIHAR---LIVQQCTLAPNSITNPSLILWNSLIRAYSRLHLFQEAIKSY---QTMS 119
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST--ACGFVICSCS----- 243
++P+ + + VL AC G AIH + + G V C
Sbjct: 120 YMGLEPDKYTFTFVLKACTGALDFHEGVAIHQDIASRELECDVFIGTGLVDMYCKMGHLD 179
Query: 244 ----VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL-RDVIVANVKPNTVTIVSVLPAC 298
VF+++ +DV WN++IS +S +AL++ R + V+P++V+I+++ PA
Sbjct: 180 NARKVFDKMPGKDVASWNAMISGLSQSSNPCEALEIFQRMQMEEGVEPDSVSILNLAPAV 239
Query: 299 LKLAALPQGLGTGSFV---------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
+L + +V N+LIDMY +CG ++ + +IF M K+ +SW M
Sbjct: 240 SRLEDVDSCKSIHGYVVRRCVFGVVSNSLIDMYSKCGEVKLAHQIFDQMWVKDDISWATM 299
Query: 350 ISVY 353
++ Y
Sbjct: 300 MAGY 303
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 104/244 (42%), Gaps = 45/244 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W M+ Y G E ++ F M + VRP+ + A S L R +
Sbjct: 599 SWNVMIAGYLHNGCANEAISTFNQMKLESVRPNLVTFVTILPAVSYLSILREAMAFH--- 655
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
AC+ I+ G + T L+ NSLID YAK L S
Sbjct: 656 --------ACI--------IRMGFISST-----------LIGNSLIDMYAKSGQLSYSEK 688
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +++ K +SWNAML+GYA+ G E L M+ +T + +++S VL+AC
Sbjct: 689 CFHEMENKGTISWNAMLSGYAMHGQGEVALALFSLMQ--ETHVPVDSVSYISVLSACRHA 746
Query: 212 KGVKLGKAI-HGYVLRHHIHLST---ACGFVICSCS-VFNQL--------STRDVVVWNS 258
++ G+ I +H++ S AC + C+ +F+++ + D VW +
Sbjct: 747 GLIQEGRNIFQSMTEKHNLEPSMEHYACMVDLLGCAGLFDEVLCLIDKMPTEPDAQVWGA 806
Query: 259 IISA 262
++ A
Sbjct: 807 LLGA 810
>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
Length = 803
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/376 (25%), Positives = 174/376 (46%), Gaps = 58/376 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT M+ N G + + V F M+ +G+ P F+ V +C+ + +G+ V+ ++
Sbjct: 130 SWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFV 189
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSH 150
I + V +L ++ KCG E +FE M + N+++ Y + ++
Sbjct: 190 IKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLAL 249
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++++ +VSWNA++AGY G + M + + M+P+ +++ VL+ACA
Sbjct: 250 SMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRM-LTASSMEPDEFTVTSVLSACAN 308
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVICSC---------------------------- 242
++ +K+GK +H Y+LR + S+ + S
Sbjct: 309 LRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFT 368
Query: 243 ----------------SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286
VF+ ++ RDV+ W ++I + ++GQ +A++L R +I + +P
Sbjct: 369 ALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEP 428
Query: 287 NTVTIVSVLPACLKLAALPQG----------LGTGSF-VWNALIDMYGRCGAIQKSRKIF 335
N+ T+ +VL AC LA L G L S V NA+I +Y R G++ +R++F
Sbjct: 429 NSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVF 488
Query: 336 -VLMPHKNLVSWNVMI 350
+ K V+W MI
Sbjct: 489 DQICWRKETVTWTSMI 504
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/350 (24%), Positives = 160/350 (45%), Gaps = 31/350 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W +++ YN G + + F M+ + PD F V AC+ L+ ++GK ++ Y
Sbjct: 262 SWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSY 321
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM---DQDFLVNNSLIDFYAKCRYLK 147
++ ++ + L+ + K G +E + ++ D + + +L++ Y K K
Sbjct: 322 ILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTK 381
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
+ F + +D+++W AM+ GY G +E L MI++ +PN+ +L+ VL+A
Sbjct: 382 QAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELF--RSMIRSGPEPNSHTLAAVLSA 439
Query: 208 CAQVKGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTR-DVVV 255
CA + + GK IH +R + +S A G V + VF+Q+ R + V
Sbjct: 440 CASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVT 499
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------L 308
W S+I A + G A+ L +++ VKP+ VT + V AC + +G L
Sbjct: 500 WTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQML 559
Query: 309 GTGSFV-----WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
V + ++D+ R G + ++ + MP + V W +++
Sbjct: 560 NEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAA 609
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 123/277 (44%), Gaps = 60/277 (21%)
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGG-FREEVTNLLDEMEMIQT 192
NSL+ YAK L + F+++ ++D VSW M+ G G F + V LD M+
Sbjct: 101 NSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLD---MVGE 157
Query: 193 DMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-------------------------- 226
+ P+ L+ VL++CA + +G+ +H +V++
Sbjct: 158 GLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETA 217
Query: 227 ----------------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
+ L T G + + S+F + R +V WN+II+ + ++G
Sbjct: 218 RAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDD 277
Query: 271 DALDLLRDVIVA-NVKPNTVTIVSVLPACLKLAALPQG-------LGTG----SFVWNAL 318
AL ++ A +++P+ T+ SVL AC L L G L TG S + NAL
Sbjct: 278 MALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNAL 337
Query: 319 IDMYGRCGAIQKSRKIF--VLMPHKNLVSWNVMISVY 353
I Y + G+++ +R+I ++ N++S+ ++ Y
Sbjct: 338 ISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGY 374
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 312 SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+F WN+L+ MY + G + +R +F MP ++ VSW VM+
Sbjct: 97 AFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMV 135
>gi|449502637|ref|XP_004161700.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
Length = 847
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 174/347 (50%), Gaps = 58/347 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRV-GKDVYDYM 91
W SM+ Y G++ E + LF M + ++ D + C++L D + G+ ++ +
Sbjct: 331 WNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHA 390
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ K G ++ D + N+L+ Y K + +
Sbjct: 391 M-------------------KSG-----------IELDAYLGNALLSMYVKHNQITAAQY 420
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K++ D++SWN M++ +A FR + L + M +++++ N+ ++ +LA C
Sbjct: 421 VFEKMRGLDVISWNTMISAFAQSMFRAKAFELF--LMMCESEIKFNSYTIVSLLAFCKDG 478
Query: 212 KGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ G++IHG+ +++ + ++T+ CG + ++F + RD+V WNS+I
Sbjct: 479 SDLVFGRSIHGFAIKNGLEINTSLNTSLTEMYINCGDERAATNMFTRCPQRDLVSWNSLI 538
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------- 307
S+++++ AL LL + +++ ++PN+VTI+++L +C +LA LP G
Sbjct: 539 SSYIKNDNAGKAL-LLFNHMISELEPNSVTIINILTSCTQLAHLPLGQCLHAYTTRREVS 597
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L + + NA I MY RCG +Q + KIF + +++VSWN MI+ YG
Sbjct: 598 LEMDASLANAFITMYARCGKLQYAEKIFCTLQTRSIVSWNAMITGYG 644
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 176/375 (46%), Gaps = 59/375 (15%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKG 60
ME+ + + H + E + L+ V +W S++ + L I++ + M G
Sbjct: 1 MEIAVNLSFHGLSSTPE-----QTHLVNVSKDWNSIIKHHTKLKNDHAILSTYTQMESLG 55
Query: 61 VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITS 120
+ PD P V KAC L G ++ +C++ LDL
Sbjct: 56 ITPDSATMPLVLKACGRLNAIGNGVRIH-----------SCIRG--LDLI---------- 92
Query: 121 GLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEV 180
D V +L+DFY KC + + F ++ ++DLVSWNA+++GY +E
Sbjct: 93 -------NDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEA 145
Query: 181 TNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI-----HLSTA- 234
L EM+ + + PN+ ++ +L AC ++ ++LG+ IHGY LR+ + ++ TA
Sbjct: 146 VLLFVEMK--KAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTAL 203
Query: 235 CGF-----VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289
GF + S VF+ + R++V WN+II+ F+ G AL L +++ +K + V
Sbjct: 204 VGFYMRFDAVLSHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAV 263
Query: 290 TIVSVLPACLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLM 338
T++ V+ AC + L G+ F+ NAL++MY G+++ S +F +
Sbjct: 264 TMLVVIQACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAV 323
Query: 339 PHKNLVSWNVMISVY 353
P + WN MIS Y
Sbjct: 324 PTSDAALWNSMISSY 338
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/395 (21%), Positives = 161/395 (40%), Gaps = 80/395 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G +HAH + G+EL A+LG+ LL ++ +W +M+ +
Sbjct: 383 GRGLHAHAMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQ 442
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+ + LF +M + ++ + + + C + D G+ ++ + I E N +
Sbjct: 443 SMFRAKAFELFLMMCESEIKFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKNGLEINTSL 502
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L +++I CG + + F++ Q+DLV
Sbjct: 503 NTSLTEMYINCGDERAATNM------------------------------FTRCPQRDLV 532
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SWN++++ Y + L + M ++++PN++++ +L +C Q+ + LG+ +H
Sbjct: 533 SWNSLISSYIKNDNAGKALLLFNHM---ISELEPNSVTIINILTSCTQLAHLPLGQCLHA 589
Query: 223 YVLRHHIHLS-------------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
Y R + L CG + + +F L TR +V WN++I+ + G+
Sbjct: 590 YTTRREVSLEMDASLANAFITMYARCGKLQYAEKIFCTLQTRSIVSWNAMITGYGMHGRG 649
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPAC----LKLAALPQ--------GLGTGSFVWNA 317
DA ++ KPN V+ SVL AC L + L G+ +
Sbjct: 650 RDATLAFAQMLDDGFKPNNVSFASVLSACSHSGLTVTGLQLFHSMVRDFGIAPQLTHYGC 709
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMIS 351
++D+ GR G ++ MP + S W ++S
Sbjct: 710 MVDLLGRGGHFSEAIAFINSMPIEPDASIWRALLS 744
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/348 (24%), Positives = 162/348 (46%), Gaps = 59/348 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ Y Y+E V LF M G+ P+ + AC E+ + R+G++++ Y
Sbjct: 128 SWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGY- 186
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
C++ +GLF D D V +L+ FY + + +SH
Sbjct: 187 ---------CLR----------------NGLF---DMDAYVGTALVGFYMRFDAV-LSHR 217
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM--EMIQTDMQPNTISLSGVLAACA 209
FS + +++VSWNA++ G+ G + L M E I+ D +++ V+ ACA
Sbjct: 218 VFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFD----AVTMLVVIQACA 273
Query: 210 QVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ ++LG +H ++L +++ + G + S ++FN + T D +WNS
Sbjct: 274 EYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNS 333
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC------------LKLAALPQ 306
+IS+++ G +A+ L + + +K + TI +L C L A+
Sbjct: 334 MISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKS 393
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G+ +++ NAL+ MY + I ++ +F M +++SWN MIS +
Sbjct: 394 GIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFA 441
>gi|449448940|ref|XP_004142223.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
Length = 847
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 174/347 (50%), Gaps = 58/347 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRV-GKDVYDYM 91
W SM+ Y G++ E + LF M + ++ D + C++L D + G+ ++ +
Sbjct: 331 WNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHA 390
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ K G ++ D + N+L+ Y K + +
Sbjct: 391 M-------------------KSG-----------IELDAYLGNALLSMYVKHNQITAAQY 420
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K++ D++SWN M++ +A FR + L + M +++++ N+ ++ +LA C
Sbjct: 421 VFEKMRGLDVISWNTMISAFAQSMFRAKAFELF--LMMCESEIKFNSYTIVSLLAFCKDG 478
Query: 212 KGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ G++IHG+ +++ + ++T+ CG + ++F + RD+V WNS+I
Sbjct: 479 SDLVFGRSIHGFAIKNGLEINTSLNTSLTEMYINCGDERAATNMFTRCPQRDLVSWNSLI 538
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------- 307
S+++++ AL LL + +++ ++PN+VTI+++L +C +LA LP G
Sbjct: 539 SSYIKNDNAGKAL-LLFNHMISELEPNSVTIINILTSCTQLAHLPLGQCLHAYTTRREVS 597
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L + + NA I MY RCG +Q + KIF + +++VSWN MI+ YG
Sbjct: 598 LEMDASLANAFITMYARCGKLQYAEKIFCTLQTRSIVSWNAMITGYG 644
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/375 (26%), Positives = 172/375 (45%), Gaps = 59/375 (15%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKG 60
ME+ + + H + E + L+ V +W S++ + L I++ + M G
Sbjct: 1 MEIAVNLSFHGLSSTPE-----QTHLVNVSKDWNSIIKHHTKLKNDHAILSTYTQMESLG 55
Query: 61 VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITS 120
+ PD P V KAC L G ++ ++ + + V L+D + KCG + S
Sbjct: 56 ITPDSATMPLVLKACGRLNAIGNGVRIHSFIRGLDLINDVRVGTALVDFYCKCGLVAEAS 115
Query: 121 GLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEV 180
+F EM ++DLVSWNA+++GY +E
Sbjct: 116 KVFVEM------------------------------PERDLVSWNALISGYVGCLCYKEA 145
Query: 181 TNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI-----HLSTA- 234
L EM+ + + PN+ ++ +L AC ++ ++LG+ IHGY LR+ + ++ TA
Sbjct: 146 VLLFVEMK--KAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTAL 203
Query: 235 CGF-----VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289
GF + S VF+ + R++V WN+II+ F+ G AL L +++ +K + V
Sbjct: 204 VGFYMRFDAVLSHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAV 263
Query: 290 TIVSVLPACLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLM 338
T++ V+ AC + L G+ F+ NAL++MY G+++ S +F +
Sbjct: 264 TMLVVIQACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAV 323
Query: 339 PHKNLVSWNVMISVY 353
P + WN MIS Y
Sbjct: 324 PTSDAALWNSMISSY 338
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/395 (21%), Positives = 161/395 (40%), Gaps = 80/395 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G +HAH + G+EL A+LG+ LL ++ +W +M+ +
Sbjct: 383 GRGLHAHAMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQ 442
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+ + LF +M + ++ + + + C + D G+ ++ + I E N +
Sbjct: 443 SMFRAKAFELFLMMCESEIKFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKNGLEINTSL 502
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L +++I CG + + F++ Q+DLV
Sbjct: 503 NTSLTEMYINCGDERAATNM------------------------------FTRCPQRDLV 532
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SWN++++ Y + L + M ++++PN++++ +L +C Q+ + LG+ +H
Sbjct: 533 SWNSLISSYIKNDNAGKALLLFNHM---ISELEPNSVTIINILTSCTQLAHLPLGQCLHA 589
Query: 223 YVLRHHIHLS-------------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
Y R + L CG + + +F L TR +V WN++I+ + G+
Sbjct: 590 YTTRREVSLEMDASLANAFITMYARCGKLQYAEKIFCTLQTRSIVSWNAMITGYGMHGRG 649
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPAC----LKLAALPQ--------GLGTGSFVWNA 317
DA ++ KPN V+ SVL AC L + L G+ +
Sbjct: 650 RDATLAFAQMLDDGFKPNNVSFASVLSACSHSGLTVTGLQLFHSMVRDFGIAPQLTHYGC 709
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMIS 351
++D+ GR G ++ MP + S W ++S
Sbjct: 710 MVDLLGRGGHFSEAIAFINSMPIEPDASIWRALLS 744
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/348 (24%), Positives = 162/348 (46%), Gaps = 59/348 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ Y Y+E V LF M G+ P+ + AC E+ + R+G++++ Y
Sbjct: 128 SWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGY- 186
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
C++ +GLF D D V +L+ FY + + +SH
Sbjct: 187 ---------CLR----------------NGLF---DMDAYVGTALVGFYMRFDAV-LSHR 217
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM--EMIQTDMQPNTISLSGVLAACA 209
FS + +++VSWNA++ G+ G + L M E I+ D +++ V+ ACA
Sbjct: 218 VFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFD----AVTMLVVIQACA 273
Query: 210 QVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ ++LG +H ++L +++ + G + S ++FN + T D +WNS
Sbjct: 274 EYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNS 333
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC------------LKLAALPQ 306
+IS+++ G +A+ L + + +K + TI +L C L A+
Sbjct: 334 MISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKS 393
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G+ +++ NAL+ MY + I ++ +F M +++SWN MIS +
Sbjct: 394 GIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFA 441
>gi|147836510|emb|CAN70889.1| hypothetical protein VITISV_005594 [Vitis vinifera]
Length = 630
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 106/417 (25%), Positives = 196/417 (47%), Gaps = 104/417 (24%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ LG +H +++ G+ F+ + L++++ +WTSMM
Sbjct: 58 LRLGSCIHTNILKSGLHTNVFVANSLMDMYAKCGRIEDAAKLFDHMPDKTVVSWTSMMSG 117
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ G ++E++++F+ M++ ++P+ + + +AC++ +D ++ + ++ ++I F
Sbjct: 118 HCQRGAFDEVISIFWRMLET-LQPNEYTLAVILQACAQKRDLKLVQLIHCHIIKTGF--- 173
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
++D F++ NSLID Y K L + ++ +
Sbjct: 174 ------VMDAFLQ---------------------NSLIDGYTKSGTLVAAEKLMKRLICR 206
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT--------ISLSGVLAACAQV 211
D+VSW ++++G L G E+ LL EM + + PNT +++ +L C+
Sbjct: 207 DVVSWTSVISGCVLNGMVEKA--LLFFFEMQEDGVSPNTGDGQYLSTETIATLLQGCSHS 264
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSC-------------------SVFNQLSTRD 252
K +KLG+ IHGY ++H GF C+ +F ++S RD
Sbjct: 265 KCLKLGEQIHGYQIKH--------GFFPCTIVENSLIYMYAENERDDAAFQLFRKMSCRD 316
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVAN----VKPNTVTIVSVLPACLKLAALP--- 305
+V WN++IS+ V+ AL LL +V + P+ VTI++ + AC LA+L
Sbjct: 317 IVSWNTMISSLVKGSSSYQALMLLSEVHSNGGSDMIYPDFVTILASIQACSSLASLQLGQ 376
Query: 306 --------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
GL FV N+L+DMYG+CG + + K+ MP ++L SWN +I+ YG
Sbjct: 377 VIHGYITRAGLICDIFVQNSLVDMYGKCGRLHLAEKVSEEMPVRDLGSWNSLIAAYG 433
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 143/318 (44%), Gaps = 63/318 (19%)
Query: 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLF 123
D +V +C+ +D R+G ++ ++ N V L+D++ KCGR+E + LF
Sbjct: 41 DSLTAVRVLSSCAANRDLRLGSCIHTNILKSGLHTNVFVANSLMDMYAKCGRIEDAAKLF 100
Query: 124 EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNL 183
+ M K +VSW +M++G+ G +EV ++
Sbjct: 101 DHM------------------------------PDKTVVSWTSMMSGHCQRGAFDEVISI 130
Query: 184 LDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH------GYVLRHHIHLS----- 232
M++T +QPN +L+ +L ACAQ + +KL + IH G+V+ + S
Sbjct: 131 F--WRMLET-LQPNEYTLAVILQACAQKRDLKLVQLIHCHIIKTGFVMDAFLQNSLIDGY 187
Query: 233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN----- 287
T G ++ + + +L RDVV W S+IS V +G V AL ++ V PN
Sbjct: 188 TKSGTLVAAEKLMKRLICRDVVSWTSVISGCVLNGMVEKALLFFFEMQEDGVSPNTGDGQ 247
Query: 288 ---TVTIVSVLPA-----CLKLAA------LPQGLGTGSFVWNALIDMYGRCGAIQKSRK 333
T TI ++L CLKL + G + V N+LI MY + +
Sbjct: 248 YLSTETIATLLQGCSHSKCLKLGEQIHGYQIKHGFFPCTIVENSLIYMYAENERDDAAFQ 307
Query: 334 IFVLMPHKNLVSWNVMIS 351
+F M +++VSWN MIS
Sbjct: 308 LFRKMSCRDIVSWNTMIS 325
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/345 (22%), Positives = 144/345 (41%), Gaps = 73/345 (21%)
Query: 7 VHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNVLGY 45
+H H+I G + AFL + L++ + +WTS++ + G
Sbjct: 164 IHCHIIKTGFVMDAFLQNSLIDGYTKSGTLVAAEKLMKRLICRDVVSWTSVISGCVLNGM 223
Query: 46 YEEIVNLFYLMIDKGVRPDH--------FVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
E+ + F+ M + GV P+ + + CS K ++G+ ++ Y I
Sbjct: 224 VEKALLFFFEMQEDGVSPNTGDGQYLSTETIATLLQGCSHSKCLKLGEQIHGYQIK---- 279
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
F C +V NSLI YA+ + F K+
Sbjct: 280 ----------HGFFPCT----------------IVENSLIYMYAENERDDAAFQLFRKMS 313
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ-TDM-QPNTISLSGVLAACAQVKGVK 215
+D+VSWN M++ G + LL E+ +DM P+ +++ + AC+ + ++
Sbjct: 314 CRDIVSWNTMISSLVKGSSSYQALMLLSEVHSNGGSDMIYPDFVTILASIQACSSLASLQ 373
Query: 216 LGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
LG+ IHGY+ R + + CG + + V ++ RD+ WNS+I+A+
Sbjct: 374 LGQVIHGYITRAGLICDIFVQNSLVDMYGKCGRLHLAEKVSEEMPVRDLGSWNSLIAAYG 433
Query: 265 RSGQVVDALDLLRDVIVANV-KPNTVTIVSVLPACLKLAALPQGL 308
+G + AL++ + + +PN +T ++L AC + +G
Sbjct: 434 INGNGISALNVFKQLKNTGAHRPNAITFTNILSACAHAGLVAEGF 478
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D V NSL+D Y KC L ++ ++ +DL SWN+++A Y + G N+ +++
Sbjct: 390 DIFVQNSLVDMYGKCGRLHLAEKVSEEMPVRDLGSWNSLIAAYGINGNGISALNVFKQLK 449
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH 228
+PN I+ + +L+ACA V G I + R +
Sbjct: 450 NTGAH-RPNAITFTNILSACAHAGLVAEGFEIFKSMKREY 488
>gi|222623987|gb|EEE58119.1| hypothetical protein OsJ_09011 [Oryza sativa Japonica Group]
Length = 1112
Score = 143 bits (361), Expect = 1e-31, Method: Composition-based stats.
Identities = 100/347 (28%), Positives = 165/347 (47%), Gaps = 59/347 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+WTSM+G GY ++ + LF M+ D ++PD V V +AC+ L+D R G V+
Sbjct: 196 SWTSMIGACLGSGYADQALRLFREMLADGALQPDGVVAVVVLRACAMLEDVRAGASVHAV 255
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+G D V+NSL+D YAKC L+ +
Sbjct: 256 ATRRGLQG------------------------------DLFVDNSLVDMYAKCLDLRSAR 285
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F I K++VSWN ML+G G E +LL +Q + + +L+ +L C +
Sbjct: 286 KVFDLIAVKNVVSWNTMLSGLVHAGSYPEALHLL----ALQIGVVGDETTLAVLLQLCKK 341
Query: 211 VK-GVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNS 258
+ G + +++HG +R + LS A CG V +F + R+V+ W++
Sbjct: 342 KRLGGQAARSVHGAAIRRRL-LSMALLNALLDAYGKCGLVEDVLRLFQGMRERNVITWST 400
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQG 307
+I+A + + A+ ++V +PN++T++S++ AC A A+ G
Sbjct: 401 VIAACAHNARPHAAMACFVAMLVTGERPNSITVLSLVEACGSCAEMWASRRAHGVAVRSG 460
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
LG V NAL+ MYG+CG + S ++F MP K++++WN MI G
Sbjct: 461 LGFELAVGNALVHMYGKCGELGASARVFDTMPVKDVLTWNSMIGALG 507
Score = 90.5 bits (223), Expect = 1e-15, Method: Composition-based stats.
Identities = 61/243 (25%), Positives = 117/243 (48%), Gaps = 27/243 (11%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V NSL+ YA + F ++ +D+ SW +M+ G+ ++ L EM +
Sbjct: 165 VANSLLSLYATLGDFASAAILFGEMPDRDVASWTSMIGACLGSGYADQALRLFREM-LAD 223
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVIC 240
+QP+ + VL ACA ++ V+ G ++H R + + C +
Sbjct: 224 GALQPDGVVAVVVLRACAMLEDVRAGASVHAVATRRGLQGDLFVDNSLVDMYAKCLDLRS 283
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ VF+ ++ ++VV WN+++S V +G +AL LL + V + T+ +L C K
Sbjct: 284 ARKVFDLIAVKNVVSWNTMLSGLVHAGSYPEALHLL--ALQIGVVGDETTLAVLLQLCKK 341
Query: 301 L------------AALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
AA+ + L + + + NAL+D YG+CG ++ ++F M +N+++W+
Sbjct: 342 KRLGGQAARSVHGAAIRRRLLSMALL-NALLDAYGKCGLVEDVLRLFQGMRERNVITWST 400
Query: 349 MIS 351
+I+
Sbjct: 401 VIA 403
Score = 80.1 bits (196), Expect = 1e-12, Method: Composition-based stats.
Identities = 51/150 (34%), Positives = 77/150 (51%), Gaps = 12/150 (8%)
Query: 214 VKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
+K +IH V + L G + +F ++ RDV W S+I A + SG AL
Sbjct: 155 LKTPASIHTPVANSLLSLYATLGDFASAAILFGEMPDRDVASWTSMIGACLGSGYADQAL 214
Query: 274 DLLRDVIV-ANVKPNTVTIVSVLPACLKL-----------AALPQGLGTGSFVWNALIDM 321
L R+++ ++P+ V V VL AC L A +GL FV N+L+DM
Sbjct: 215 RLFREMLADGALQPDGVVAVVVLRACAMLEDVRAGASVHAVATRRGLQGDLFVDNSLVDM 274
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
Y +C ++ +RK+F L+ KN+VSWN M+S
Sbjct: 275 YAKCLDLRSARKVFDLIAVKNVVSWNTMLS 304
Score = 79.0 bits (193), Expect = 4e-12, Method: Composition-based stats.
Identities = 49/189 (25%), Positives = 93/189 (49%), Gaps = 15/189 (7%)
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
N+L+D Y KC ++ F ++++++++W+ ++A A + M+ T
Sbjct: 368 NALLDAYGKCGLVEDVLRLFQGMRERNVITWSTVIAACAHNARPHAAMACF--VAMLVTG 425
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSC 242
+PN+I++ ++ AC + + HG +R +H+ CG + S
Sbjct: 426 ERPNSITVLSLVEACGSCAEMWASRRAHGVAVRSGLGFELAVGNALVHMYGKCGELGASA 485
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA--NVKPNTVTIVSVLPACLK 300
VF+ + +DV+ WNS+I A +G+ DAL LL + V+PN VT+++ L AC
Sbjct: 486 RVFDTMPVKDVLTWNSMIGALGMNGRARDALALLHRMEAEGDEVRPNGVTMLAALWACAH 545
Query: 301 LAALPQGLG 309
+ +G+G
Sbjct: 546 GGLVEEGIG 554
Score = 55.5 bits (132), Expect = 4e-05, Method: Composition-based stats.
Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 17/185 (9%)
Query: 35 SMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI 94
+++ Y G E+++ LF M ++ V V AC+ + M+
Sbjct: 369 ALLDAYGKCGLVEDVLRLFQGMRERNV----ITWSTVIAACAHNARPHAAMACFVAMLVT 424
Query: 95 KFEGNACVKRPLLDLFIKCGRM---------EITSGLFEEMDQDFLVNNSLIDFYAKCRY 145
N+ L++ C M + SGL E+ V N+L+ Y KC
Sbjct: 425 GERPNSITVLSLVEACGSCAEMWASRRAHGVAVRSGLGFEL----AVGNALVHMYGKCGE 480
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
L S F + KD+++WN+M+ + G + LL ME +++PN +++ L
Sbjct: 481 LGASARVFDTMPVKDVLTWNSMIGALGMNGRARDALALLHRMEAEGDEVRPNGVTMLAAL 540
Query: 206 AACAQ 210
ACA
Sbjct: 541 WACAH 545
>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 697
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/405 (23%), Positives = 191/405 (47%), Gaps = 55/405 (13%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
M G+QVH+ + ++GS L++++ +W S++
Sbjct: 168 MNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITC 227
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI-SIKFEG 98
+ G E +++F +M++ V PD V AC+ L +VG++V+ ++ + K
Sbjct: 228 FEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRN 287
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
+ + +D++ KC R++ +F+ M ++ + S+I YA K + F+K+
Sbjct: 288 DIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMA 347
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
++++VSWNA++AGY G EE +L ++ + + P S + +L ACA + + LG
Sbjct: 348 ERNVVSWNALIAGYTQNGENEEALSLFCLLK--RESVCPTHYSFANILKACADLAELHLG 405
Query: 218 KAIHGYVLRHH-----------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
H +VL+H I + CG V VF ++ RD V WN++I
Sbjct: 406 MQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMI 465
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
F ++G +AL+L R+++ + KP+ +T++ VL AC + +G S +
Sbjct: 466 IGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGV 525
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ ++D+ GR G +++++ + MP + V W +++
Sbjct: 526 APLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAA 570
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 147/292 (50%), Gaps = 26/292 (8%)
Query: 87 VYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRY 145
V+ +I F ++ L+D + KCG +E +F++M Q + NS++ K +
Sbjct: 42 VHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGF 101
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
L + F + ++D +WN+M++G+A EE M + N S + VL
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMH--KEGFVLNEYSFASVL 159
Query: 206 AACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVV 254
+AC+ + + G +H Y+ + + + CG V + VF+++ R+VV
Sbjct: 160 SACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVV 219
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------- 307
WNS+I+ F ++G V+ALD+ + ++ + V+P+ VT+ SV+ AC L+A+ G
Sbjct: 220 SWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRV 279
Query: 308 -----LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L + NA +DMY +C I+++R IF MP +N+++ MIS Y
Sbjct: 280 VKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYA 331
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/380 (23%), Positives = 163/380 (42%), Gaps = 92/380 (24%)
Query: 31 CNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
C W SM+ + EE + F +M +G + + V ACS L D G V+
Sbjct: 118 CTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSL 177
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ F + + L+D++ KCG + +F+EM
Sbjct: 178 IAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMG----------------------- 214
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+++VSWN+++ + G E ++ M+++ ++P+ ++L+ V++ACA
Sbjct: 215 -------DRNVVSWNSLITCFEQNGPAVEALDVF--QMMLESRVEPDEVTLASVISACAS 265
Query: 211 VKGVKLGKAIHGYV-----LRHHIHLSTACGFVICSCS---------------------- 243
+ +K+G+ +HG V LR+ I LS A + CS
Sbjct: 266 LSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETS 325
Query: 244 ----------------VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
+F +++ R+VV WN++I+ + ++G+ +AL L + +V P
Sbjct: 326 MISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPT 385
Query: 288 TVTIVSVLPACLKLAALPQGL-------------GTGS----FVWNALIDMYGRCGAIQK 330
+ ++L AC LA L G+ +G FV N+LIDMY +CG +++
Sbjct: 386 HYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEE 445
Query: 331 SRKIFVLMPHKNLVSWNVMI 350
+F M ++ VSWN MI
Sbjct: 446 GYLVFRKMMERDCVSWNAMI 465
>gi|28564593|dbj|BAC57760.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50509708|dbj|BAD31746.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 703
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 108/402 (26%), Positives = 190/402 (47%), Gaps = 51/402 (12%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGM-------------YNVL---- 43
+ LG+Q+HA + G+ L +LL V+ + S++ YNVL
Sbjct: 89 LRLGVQLHALSLSLGLSRHPILLPRLLSVYTSHPSLLPSAASVAADSTLPLPYNVLISSC 148
Query: 44 ---GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G + + + M GV PD F P V +AC+E ++ +G+ V+ + +GN
Sbjct: 149 LRHGLPLQALAAYQEMGKNGVLPDVFTYPSVLRACAEARELVLGRAVHMHAAGAGMDGNL 208
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ L+ ++ KCG + +F+ M Q +V+ NS+I YA + F +++ +
Sbjct: 209 FFQNALMSMYAKCGDLASARKVFDGMVQRDVVSWNSMISSYAAVGQWAEAMELFRRMRDE 268
Query: 160 ----DLVSWNAMLAGY-ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGV 214
+ V+WN + GY + +R V + EM++ + + ++L L AC++V +
Sbjct: 269 GTEVNSVTWNTIAGGYIQMRDYRAAVGLI---REMVRGGAEVDYVTLVIGLNACSRVGWL 325
Query: 215 KLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAF 263
+LGK IHG +R I + C + C+ +F L VV WN+++S+F
Sbjct: 326 RLGKEIHGLAVRMCCDQVESVSNALITMYARCKDMECARMLFRMLECPGVVTWNTMLSSF 385
Query: 264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGS 312
S +A + R++I VKPN VT+V+ L C ++A L G
Sbjct: 386 ALSDCAEEASSIFREMICRGVKPNYVTVVTYLALCARVANLQHGQELHGHIVKHGFKGYR 445
Query: 313 FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+WN+LIDMY + G + ++ +F M +++S+ MI+ YG
Sbjct: 446 LLWNSLIDMYSKSGRLSVAQNVFDTMDDCDMISYTSMIAGYG 487
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/393 (23%), Positives = 181/393 (46%), Gaps = 65/393 (16%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYN 41
LG VH H G++ F + L+ ++ +W SM+ Y
Sbjct: 191 LGRAVHMHAAGAGMDGNLFFQNALMSMYAKCGDLASARKVFDGMVQRDVVSWNSMISSYA 250
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRV----------GKDVYDYM 91
+G + E + LF M D+G + + +++DYR G DY
Sbjct: 251 AVGQWAEAMELFRRMRDEGTEVNSVTWNTIAGGYIQMRDYRAAVGLIREMVRGGAEVDY- 309
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM--DQDFLVNNSLIDFYAKCRYLKVS 149
+++ NAC + +++ G+ EI GL M DQ V+N+LI YA+C+ ++ +
Sbjct: 310 VTLVIGLNACSRVG----WLRLGK-EI-HGLAVRMCCDQVESVSNALITMYARCKDMECA 363
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F ++ +V+WN ML+ +AL EE +++ EM I ++PN +++ LA CA
Sbjct: 364 RMLFRMLECPGVVTWNTMLSSFALSDCAEEASSIFREM--ICRGVKPNYVTVVTYLALCA 421
Query: 210 QVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+V ++ G+ +HG++++H I + + G + + +VF+ + D++ + S
Sbjct: 422 RVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDCDMISYTS 481
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC------------LKLAALPQ 306
+I+ + G+ AL L +I + +KP+ + +V+VL AC +
Sbjct: 482 MIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVLEGEELFNKMVISY 541
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
G+ ++ +ID+Y R G ++K+ ++ P
Sbjct: 542 GIKPQMEHYSCMIDLYARAGLLEKAEEMLDHTP 574
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 30/143 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++ G ++H H++ G + L + L++++ ++TSM+
Sbjct: 426 LQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDCDMISYTSMIAG 485
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD-----YMISI 94
Y + G + LF MID G++PDH + V ACS G+++++ Y I
Sbjct: 486 YGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVLEGEELFNKMVISYGIKP 545
Query: 95 KFEGNACVKRPLLDLFIKCGRME 117
+ E +C ++DL+ + G +E
Sbjct: 546 QMEHYSC----MIDLYARAGLLE 564
>gi|413924746|gb|AFW64678.1| hypothetical protein ZEAMMB73_926861 [Zea mays]
Length = 655
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 156/304 (51%), Gaps = 18/304 (5%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W M+ Y Y+E + LF M + GV PD + V AC ++ R+GK ++ YM
Sbjct: 218 SWGVMLDSYCQTRNYKEALLLFAKMKNSGVVPDQLILATVLPACGHIRHLRIGKAIHSYM 277
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSH 150
+ A + L+ L+ C ME+ L+ EM +D + + +++ YA+ R ++++
Sbjct: 278 LVSDMIIGAHISSALISLYASCANMEMAEKLYNEMPRKDLVSSTAMVSGYARNRKVEIAR 337
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + +KD+VSW+AM++GY E +L + M+ + ++ + I++ V++ACA
Sbjct: 338 SIFDGMPEKDVVSWSAMISGYVDSNQPNEALSLFNGMQ--ECGIRSDEITMLSVISACAN 395
Query: 211 VKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ + K IH ++ L +H+ A CG + + +VFN++ ++V+ W S+
Sbjct: 396 LGSLDKAKWIHAFIKNSGLNKVLHICNALIDMFAKCGGINLALNVFNEMPLKNVITWTSM 455
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALI 319
ISAF G +L L + +PN VT +S+L AC + + G ++++++
Sbjct: 456 ISAFAMHGDGKSSLRLFEQMKDEGAEPNEVTFLSLLYACCHAGLVHE----GRLLFSSMV 511
Query: 320 DMYG 323
YG
Sbjct: 512 QQYG 515
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 129/279 (46%), Gaps = 55/279 (19%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D V +L YA C ++ + F + +D+VSW ML Y +E L +M+
Sbjct: 184 DGFVGTALAGAYAACGCVRDTRKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLLFAKMK 243
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI----HLSTACGFVICSC-- 242
+ + P+ + L+ VL AC ++ +++GKAIH Y+L + H+S+A + SC
Sbjct: 244 --NSGVVPDQLILATVLPACGHIRHLRIGKAIHSYMLVSDMIIGAHISSALISLYASCAN 301
Query: 243 ------------------------------------SVFNQLSTRDVVVWNSIISAFVRS 266
S+F+ + +DVV W+++IS +V S
Sbjct: 302 MEMAEKLYNEMPRKDLVSSTAMVSGYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDS 361
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVW 315
Q +AL L + ++ + +T++SV+ AC L +L + GL +
Sbjct: 362 NQPNEALSLFNGMQECGIRSDEITMLSVISACANLGSLDKAKWIHAFIKNSGLNKVLHIC 421
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
NALIDM+ +CG I + +F MP KN+++W MIS +
Sbjct: 422 NALIDMFAKCGGINLALNVFNEMPLKNVITWTSMISAFA 460
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 16/76 (21%)
Query: 294 VLPACLKLAALPQGLG------------TGS----FVWNALIDMYGRCGAIQKSRKIFVL 337
LPA L+ AA +G G TG+ FV AL Y CG ++ +RK+F
Sbjct: 151 ALPALLRSAARCEGAGAYVAATHALAVRTGALDDGFVGTALAGAYAACGCVRDTRKVFDG 210
Query: 338 MPHKNLVSWNVMISVY 353
M +++VSW VM+ Y
Sbjct: 211 MAVRDVVSWGVMLDSY 226
>gi|347954486|gb|AEP33743.1| chlororespiratory reduction 21, partial [Lobularia maritima]
Length = 734
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 169/344 (49%), Gaps = 54/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++G+ + +G+ E+ + F M++ + PD+FV P V KAC L+ R G+ V+ ++
Sbjct: 121 SWAAIVGVRSRIGFSEDALTGFVEMLETEISPDNFVVPNVCKACGVLRWSRFGRSVHGFV 180
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + + CV V +SL D Y K +L +
Sbjct: 181 MKSRL--HDCV----------------------------FVASSLADMYGKRGFLDDARK 210
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I ++++V+WNAM+ GY G EE LL +M+ + ++P +++S L+A A +
Sbjct: 211 VFDEIPERNVVAWNAMMVGYVQNGMNEEAIRLLSDMK--EEGIEPTRVTVSMCLSASANI 268
Query: 212 KGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSII 260
G++ GK H + + + + G + + VF+++ +DVV WN +I
Sbjct: 269 GGIEEGKQSHAVAIVNGLEMDNILGTSLLNFYCKVGLIEYAEMVFDRMIGKDVVTWNLLI 328
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
S +V+ G V +A+D+ R + V N+K + VT+ +++ + L G
Sbjct: 329 SGYVQQGLVENAIDMCRLMRVENLKFDCVTLSTLMSVAARTRDLKLGKEVLCYCIRHSFE 388
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ + + +DMY CG++ ++K+F K+L+ WN +++ Y
Sbjct: 389 SDIGLASTAVDMYAECGSVVDAKKVFDATVQKDLILWNALLAAY 432
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 131/244 (53%), Gaps = 24/244 (9%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
+ L+ FYAKC L++S FS+++ +++ SW A++ + GF E+ L +EM++
Sbjct: 90 IETKLVVFYAKCDDLEISESLFSRLRIRNVFSWAAIVGVRSRIGFSEDA--LTGFVEMLE 147
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVIC 240
T++ P+ + V AC ++ + G+++HG+V++ +H + GF+
Sbjct: 148 TEISPDNFVVPNVCKACGVLRWSRFGRSVHGFVMKSRLHDCVFVASSLADMYGKRGFLDD 207
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ VF+++ R+VV WN+++ +V++G +A+ LL D+ ++P VT+ L A
Sbjct: 208 ARKVFDEIPERNVVAWNAMMVGYVQNGMNEEAIRLLSDMKEEGIEPTRVTVSMCLSASAN 267
Query: 301 LAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
+ + + GL + + +L++ Y + G I+ + +F M K++V+WN++
Sbjct: 268 IGGIEEGKQSHAVAIVNGLEMDNILGTSLLNFYCKVGLIEYAEMVFDRMIGKDVVTWNLL 327
Query: 350 ISVY 353
IS Y
Sbjct: 328 ISGY 331
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 96/428 (22%), Positives = 188/428 (43%), Gaps = 89/428 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q HA IV G+E+ LG+ LL +C W ++
Sbjct: 271 IEEGKQSHAVAIVNGLEMDNILGTSLLNFYCKVGLIEYAEMVFDRMIGKDVVTWNLLISG 330
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G E +++ LM + ++ D + + +D ++GK+V Y I FE +
Sbjct: 331 YVQQGLVENAIDMCRLMRVENLKFDCVTLSTLMSVAARTRDLKLGKEVLCYCIRHSFESD 390
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFE-EMDQDFLVNNSLIDFYAKC--------------- 143
+ +D++ +CG + +F+ + +D ++ N+L+ Y +
Sbjct: 391 IGLASTAVDMYAECGSVVDAKKVFDATVQKDLILWNALLAAYTESGHSGEALRLFYEMQL 450
Query: 144 --------------RYL----KVSHCK--FSKIKQK----DLVSWNAMLAGYALGGFREE 179
R L +VS K FS+++ +L+SW M+ G G EE
Sbjct: 451 QSVPPNVITRNLIMRSLLGNGQVSEAKEMFSQMQSSGIFPNLISWTTMMNGLVQNGCSEE 510
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST------ 233
L +M+++ +PNT+S++ L+ACA + + LG +IHGY++R+ H S+
Sbjct: 511 AILFL--RKMLESGARPNTVSIAIALSACANLASLHLGTSIHGYIIRNQQHSSSVLVDTS 568
Query: 234 ------ACGFVICSCSVFNQ--LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK 285
CG + + VF S ++ ++ ++ISA+ G++ +A+ L R++ ++
Sbjct: 569 LVDMYAKCGDINKAERVFGSKLYSEFELPLYGAMISAYALYGKLKEAVTLYRNLEEIGIE 628
Query: 286 PNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRK 333
P+ TI S+L AC Q + + + ++ ++++ G ++K+ +
Sbjct: 629 PDDKTITSLLSACKNAGDTKQAIEIFAGMVSKHGMKPCLEHYSLMVELLASAGEVEKALR 688
Query: 334 IFVLMPHK 341
+ MP+K
Sbjct: 689 LVEEMPYK 696
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/386 (22%), Positives = 164/386 (42%), Gaps = 94/386 (24%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYN 41
G VH ++ + C F+ S L +++ W +MM Y
Sbjct: 172 FGRSVHGFVMKSRLHDCVFVASSLADMYGKRGFLDDARKVFDEIPERNVVAWNAMMVGYV 231
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G EE + L M ++G+ P A + + GK +
Sbjct: 232 QNGMNEEAIRLLSDMKEEGIEPTRVTVSMCLSASANIGGIEEGKQSH------------- 278
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ I +GL EMD ++ SL++FY K ++ + F ++ KD+
Sbjct: 279 -------------AVAIVNGL--EMDN--ILGTSLLNFYCKVGLIEYAEMVFDRMIGKDV 321
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNTISLSGVLAACAQVKGVKLGKAI 220
V+WN +++GY G V N +D +++ + ++ + ++LS +++ A+ + +KLGK +
Sbjct: 322 VTWNLLISGYVQQGL---VENAIDMCRLMRVENLKFDCVTLSTLMSVAARTRDLKLGKEV 378
Query: 221 HGYVLRHHIH-----LSTA------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
Y +RH STA CG V+ + VF+ +D+++WN++++A+ SG
Sbjct: 379 LCYCIRHSFESDIGLASTAVDMYAECGSVVDAKKVFDATVQKDLILWNALLAAYTESGHS 438
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQ 329
+AL L ++ + +V PN +T + L S + N G +
Sbjct: 439 GEALRLFYEMQLQSVPPNVIT---------------RNLIMRSLLGN---------GQVS 474
Query: 330 KSRKIFVLMPHK----NLVSWNVMIS 351
+++++F M NL+SW M++
Sbjct: 475 EAKEMFSQMQSSGIFPNLISWTTMMN 500
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 86/199 (43%), Gaps = 26/199 (13%)
Query: 179 EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS------ 232
E L+ EM+ + P +L C + + GK IH VL++ S
Sbjct: 34 EALRLVTEMDFRNLRIGPEI--FGEILQGCVYDRDLSTGKQIHARVLKNGEFYSRNEYIE 91
Query: 233 -------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK 285
C + S S+F++L R+V W +I+ R G DAL +++ +
Sbjct: 92 TKLVVFYAKCDDLEISESLFSRLRIRNVFSWAAIVGVRSRIGFSEDALTGFVEMLETEIS 151
Query: 286 PNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKI 334
P+ + +V AC L + L FV ++L DMYG+ G + +RK+
Sbjct: 152 PDNFVVPNVCKACGVLRWSRFGRSVHGFVMKSRLHDCVFVASSLADMYGKRGFLDDARKV 211
Query: 335 FVLMPHKNLVSWNVMISVY 353
F +P +N+V+WN M+ Y
Sbjct: 212 FDEIPERNVVAWNAMMVGY 230
>gi|115473581|ref|NP_001060389.1| Os07g0635800 [Oryza sativa Japonica Group]
gi|22293699|dbj|BAC10044.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113611925|dbj|BAF22303.1| Os07g0635800 [Oryza sativa Japonica Group]
gi|125601219|gb|EAZ40795.1| hypothetical protein OsJ_25273 [Oryza sativa Japonica Group]
Length = 705
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 166/344 (48%), Gaps = 54/344 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT+M+G G + E+V+LF M +G D + V AC + +VG ++
Sbjct: 228 WTAMIGGTVHSGNWLEVVDLFNHMRSEGFGVDSLIAATVISACGRAGELQVGTALHG--- 284
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
C SG D V+N+L+D Y KC ++++ C
Sbjct: 285 --------------------CAVKSGASG-------DIYVSNALVDMYCKCGCVEMADCL 317
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F KD+VSW++++ GY+ G +L EMI + PN+ +L+ +L + +K
Sbjct: 318 FWSTNSKDVVSWSSLIVGYSQNGMHNVSVSLF--CEMISLGINPNSSTLASILPCLSVLK 375
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ GK IH + +RH I L + G + + ++F +D+ +WNS+++
Sbjct: 376 LIRSGKEIHCFSIRHGLERSEFVVSALIDLYSKQGLIRVAETIFWLTLDKDLAIWNSMVA 435
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW------ 315
+ +G A LR + +KP+ VT+VSVLP C + L QG ++V
Sbjct: 436 GYAVNGYSDSAFCALRLLQKVGLKPDHVTVVSVLPLCNQHHMLIQGKELHAYVIKYCINS 495
Query: 316 -----NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
NAL+DMY +CG ++ ++++F LM +N V++N++IS +G
Sbjct: 496 VCSVNNALLDMYCKCGFLEVAKEVFQLMTERNTVTYNILISSFG 539
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 165/345 (47%), Gaps = 51/345 (14%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +++ G + E + +F+ M++ G V D F P V KAC+ L G+ V++ +
Sbjct: 122 WNAVIKGLVDAGRFSEALEMFWGMVNDGSVAVDGFTYPPVIKACAALGAVAQGRKVWEMV 181
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ GNA RP ++F++C +L+D +AKC L +
Sbjct: 182 ETDIASGNA---RP--NVFVQC---------------------ALVDMFAKCGCLDEARN 215
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +DL +W AM+ G G EV +L + M +++ + V++AC +
Sbjct: 216 VFESMQVRDLAAWTAMIGGTVHSGNWLEVVDLFNHMR--SEGFGVDSLIAATVISACGRA 273
Query: 212 KGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+++G A+HG YV + + CG V + +F +++DVV W+S+I
Sbjct: 274 GELQVGTALHGCAVKSGASGDIYVSNALVDMYCKCGCVEMADCLFWSTNSKDVVSWSSLI 333
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP--ACLKLA---------ALPQGLG 309
+ ++G ++ L ++I + PN+ T+ S+LP + LKL ++ GL
Sbjct: 334 VGYSQNGMHNVSVSLFCEMISLGINPNSSTLASILPCLSVLKLIRSGKEIHCFSIRHGLE 393
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
FV +ALID+Y + G I+ + IF L K+L WN M++ Y
Sbjct: 394 RSEFVVSALIDLYSKQGLIRVAETIFWLTLDKDLAIWNSMVAGYA 438
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 154/344 (44%), Gaps = 59/344 (17%)
Query: 14 CG-VEL--CAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPK 70
CG VE+ C F + +V +W+S++ Y+ G + V+LF MI G+ P+
Sbjct: 308 CGCVEMADCLFWSTNSKDVV-SWSSLIVGYSQNGMHNVSVSLFCEMISLGINPNSSTLAS 366
Query: 71 VYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDF 130
+ S LK R GK+++ + I E +F
Sbjct: 367 ILPCLSVLKLIRSGKEIHCFSIRHGLE-----------------------------RSEF 397
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
+V+ +LID Y+K ++V+ F KDL WN+M+AGYA+ G+ + L ++ +
Sbjct: 398 VVS-ALIDLYSKQGLIRVAETIFWLTLDKDLAIWNSMVAGYAVNGYSDSAFCALRLLQKV 456
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVI 239
++P+ +++ VL C Q + GK +H YV+++ I+ + CGF+
Sbjct: 457 --GLKPDHVTVVSVLPLCNQHHMLIQGKELHAYVIKYCINSVCSVNNALLDMYCKCGFLE 514
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ VF ++ R+ V +N +IS+F + AL + + P+ VT V++L C
Sbjct: 515 VAKEVFQLMTERNTVTYNILISSFGKHNHEDQALSFFDLMKRDGIAPDKVTFVALLSCCS 574
Query: 300 KLAALPQGL------------GTGSFVWNALIDMYGRCGAIQKS 331
+ +GL ++ ++D+Y RCG + ++
Sbjct: 575 HAGLIDKGLHLYHSMLHDYNISPEKEHYSCIVDLYSRCGKLDEA 618
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 17/155 (10%)
Query: 213 GVKLGKAIHGYVLRHHIHLSTA-CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V +G HG VL + + A G V + VF+ + R+ WN++I V +G+ +
Sbjct: 78 AVLVGGHGHGTVLVAQLVRAYAKLGDVAHALRVFDGMPRRNSFAWNAVIKGLVDAGRFSE 137
Query: 272 ALDLLRDVIV-ANVKPNTVTIVSVLPACLKLAALPQG----------LGTGS-----FVW 315
AL++ ++ +V + T V+ AC L A+ QG + +G+ FV
Sbjct: 138 ALEMFWGMVNDGSVAVDGFTYPPVIKACAALGAVAQGRKVWEMVETDIASGNARPNVFVQ 197
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
AL+DM+ +CG + ++R +F M ++L +W MI
Sbjct: 198 CALVDMFAKCGCLDEARNVFESMQVRDLAAWTAMI 232
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 104/262 (39%), Gaps = 57/262 (21%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G ++H I G+E F+ S L++++ W SM+ Y V
Sbjct: 380 GKEIHCFSIRHGLERSEFVVSALIDLYSKQGLIRVAETIFWLTLDKDLAIWNSMVAGYAV 439
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
GY + L+ G++PDH V C++ GK+++ Y+I V
Sbjct: 440 NGYSDSAFCALRLLQKVGLKPDHVTVVSVLPLCNQHHMLIQGKELHAYVIKYCINSVCSV 499
Query: 103 KRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLK-------------- 147
LLD++ KCG +E+ +F+ M +++ + N LI + K +
Sbjct: 500 NNALLDMYCKCGFLEVAKEVFQLMTERNTVTYNILISSFGKHNHEDQALSFFDLMKRDGI 559
Query: 148 ----------VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNL---------LDEME 188
+S C + + K L +++ML Y + +E + + LDE
Sbjct: 560 APDKVTFVALLSCCSHAGLIDKGLHLYHSMLHDYNISPEKEHYSCIVDLYSRCGKLDEAW 619
Query: 189 MIQTDM--QPNTISLSGVLAAC 208
++M +P L G+LAAC
Sbjct: 620 CFMSNMAEEPEIDVLGGLLAAC 641
>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Glycine max]
Length = 882
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 162/341 (47%), Gaps = 54/341 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W ++G Y G ++E ++L++ M+ GV+PD + P V + C + + G++++ ++
Sbjct: 174 SWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHV 233
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I FE D V N+LI Y KC + +
Sbjct: 234 IRYGFE------------------------------SDVDVVNALITMYVKCGDVNTARL 263
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K+ +D +SWNAM++GY G E L MI+ + P+ ++++ V+ AC +
Sbjct: 264 VFDKMPNRDRISWNAMISGYFENGVCLEGLRLFG--MMIKYPVDPDLMTMTSVITACELL 321
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+LG+ IHGYVLR I + ++ G + + +VF++ RD+V W ++I
Sbjct: 322 GDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMI 381
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQGLG 309
S + AL+ + + + P+ +TI VL AC L A +GL
Sbjct: 382 SGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLV 441
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ S V N+LIDMY +C I K+ +IF KN+VSW +I
Sbjct: 442 SYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSII 482
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 167/346 (48%), Gaps = 58/346 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G E + LF +MI V PD V AC L D R+G+ ++ Y+
Sbjct: 275 SWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYV 334
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ +F GR D ++NSLI Y+ ++ +
Sbjct: 335 LRTEF-----------------GR-------------DPSIHNSLIPMYSSVGLIEEAET 364
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNTISLSGVLAACAQ 210
FS+ + +DLVSW AM++GY ++ L+ +M++ + + P+ I+++ VL+AC+
Sbjct: 365 VFSRTECRDLVSWTAMISGYENCLMPQKA---LETYKMMEAEGIMPDEITIAIVLSACSC 421
Query: 211 VKGVKLGKAIH-----------GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ + +G +H V I + C + + +F+ +++V W SI
Sbjct: 422 LCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSI 481
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTG- 311
I + + +AL R++I +KPN+VT+V VL AC ++ AL G L TG
Sbjct: 482 ILGLRINNRCFEALFFFREMI-RRLKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGV 540
Query: 312 ---SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
F+ NA++DMY RCG ++ + K F + H+ + SWN++++ Y
Sbjct: 541 SFDGFMPNAILDMYVRCGRMEYAWKQFFSVDHE-VTSWNILLTGYA 585
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 118/244 (48%), Gaps = 24/244 (9%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
+ N+L+ + + L + F ++++++L SWN ++ GYA G +E +L M +
Sbjct: 143 LGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRM--LW 200
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVIC 240
++P+ + VL C + + G+ IH +V+R+ I + CG V
Sbjct: 201 VGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNT 260
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ VF+++ RD + WN++IS + +G ++ L L +I V P+ +T+ SV+ AC
Sbjct: 261 ARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACEL 320
Query: 301 LA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L L G + N+LI MY G I+++ +F ++LVSW M
Sbjct: 321 LGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAM 380
Query: 350 ISVY 353
IS Y
Sbjct: 381 ISGY 384
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 77/333 (23%), Positives = 147/333 (44%), Gaps = 57/333 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ Y ++ + + +M +G+ PD V ACS L + +G ++++
Sbjct: 376 SWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHE-- 433
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
++ L+ I V NSLID YAKC+ + +
Sbjct: 434 --------VAKQKGLVSYSI--------------------VANSLIDMYAKCKCIDKALE 465
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +K++VSW +++ G + E EM ++PN+++L VL+ACA++
Sbjct: 466 IFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREM---IRRLKPNSVTLVCVLSACARI 522
Query: 212 KGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSII 260
+ GK IH + LR + CG + + F + +V WN ++
Sbjct: 523 GALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQFFSVD-HEVTSWNILL 581
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
+ + G+ A +L + ++ +NV PN VT +S+L AC + + +GL + +
Sbjct: 582 TGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACSRSGMVAEGLEYFNSMKYKYSI 641
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMPHK 341
+ ++D+ GR G ++++ + MP K
Sbjct: 642 MPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMK 674
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 95/211 (45%), Gaps = 24/211 (11%)
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
N+ + L G + + LD M ++ ++ + + ++ C + K G ++ YV
Sbjct: 75 NSHIYQLCLLGNLDRAMSYLDSMHELRIPVEDD--AYVALIRLCEWKRARKEGSRVYSYV 132
Query: 225 LRHHIHLSTACGFVICSC-----------SVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
HLS G + S VF ++ R++ WN ++ + ++G +AL
Sbjct: 133 SISMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEAL 192
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMY 322
DL ++ VKP+ T VL C + L +G + V NALI MY
Sbjct: 193 DLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMY 252
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+CG + +R +F MP+++ +SWN MIS Y
Sbjct: 253 VKCGDVNTARLVFDKMPNRDRISWNAMISGY 283
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 83/194 (42%), Gaps = 34/194 (17%)
Query: 24 SQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRV 83
S L + +WTS++ + E + F MI + ++P+ V AC+ +
Sbjct: 469 STLEKNIVSWTSIILGLRINNRCFEALFFFREMIRR-LKPNSVTLVCVLSACARIGALTC 527
Query: 84 GKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKC 143
GK+++ + + + + +LD++++CGRME YA
Sbjct: 528 GKEIHAHALRTGVSFDGFMPNAILDMYVRCGRME----------------------YAWK 565
Query: 144 RYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSG 203
++ V H ++ SWN +L GYA G T L M+++++ PN ++
Sbjct: 566 QFFSVDH---------EVTSWNILLTGYAERGKGAHATELFQ--RMVESNVSPNEVTFIS 614
Query: 204 VLAACAQVKGVKLG 217
+L AC++ V G
Sbjct: 615 ILCACSRSGMVAEG 628
>gi|296084817|emb|CBI27699.3| unnamed protein product [Vitis vinifera]
Length = 807
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 99/405 (24%), Positives = 189/405 (46%), Gaps = 84/405 (20%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC----------------------NWTSMMGM 39
+ G VH+++I G+E G+ L+ ++ +W +++
Sbjct: 97 DAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAG 156
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD---YRVGKDVYDYMISIKF 96
++ + EE LF+ M+ ++P++ + C+ L++ YR GK+V+ +++
Sbjct: 157 FSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEENAGYRYGKEVHCHVLR--- 213
Query: 97 EGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKI 156
RME+ +D V NSL+ FY + ++ + F +
Sbjct: 214 ------------------RMELV--------EDVSVINSLMSFYLRIGQMEKAEFLFRNM 247
Query: 157 KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKL 216
K +DLVSWNA++AGYA G + L E ++T ++P++++L VL ACA V +++
Sbjct: 248 KSRDLVSWNAIIAGYASNGEWLKALELFSEFISLET-IKPDSVTLVSVLPACAHVHNLQV 306
Query: 217 GKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
K IHGY++RH + C + + F +S +D++ WN+I+ AF
Sbjct: 307 AKGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFT 366
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA---------------ALPQGLG 309
SG ++LL ++ ++P+++TI++++ ++ L QG
Sbjct: 367 ESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHSYSIRFGLLQG-D 425
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIF-VLMPHKNLVSWNVMISVY 353
G + N ++D Y +CG ++ + IF L +N+V+ N MIS Y
Sbjct: 426 AGPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGY 470
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 93/348 (26%), Positives = 165/348 (47%), Gaps = 63/348 (18%)
Query: 36 MMGMYNVLGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI 94
+ G+ + E++ LF M + +P+ V C+ L++ GK V+ Y+I
Sbjct: 51 LSGLAGFQSHEAEVMRLFRAMHMVNEAKPNSVTIAIVLPVCARLRE-DAGKSVHSYVIKS 109
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL-KVSHCKF 153
E + L N+LI YAKC + ++ F
Sbjct: 110 GLESHT------------------------------LAGNALISMYAKCGLVCSDAYAAF 139
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK- 212
++I+ KD+VSWNA++AG++ F EE L M++ +QPN +++ +L CA ++
Sbjct: 140 NRIEFKDVVSWNAVIAGFSENKFTEEAFKLFH--AMLKGPIQPNYATIASILPVCASLEE 197
Query: 213 --GVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
G + GK +H +VLR + G + + +F + +RD+V WN+
Sbjct: 198 NAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWNA 257
Query: 259 IISAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVLPACLKLAALP------------ 305
II+ + +G+ + AL+L + I + +KP++VT+VSVLPAC + L
Sbjct: 258 IIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRH 317
Query: 306 QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
GL + V NAL+ Y +C Q + + F+++ K+L+SWN ++ +
Sbjct: 318 PGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAF 365
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 99/376 (26%), Positives = 164/376 (43%), Gaps = 88/376 (23%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W +++ Y G + + + LF I + ++PD V AC+ + + +V K ++ Y
Sbjct: 254 SWNAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGY 313
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+I + P GL E D V N+L+ FYAKC Y + +
Sbjct: 314 II----------RHP---------------GLRE----DTSVGNALLSFYAKCNYTQAAL 344
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F I +KDL+SWNA+L + G + NLL M ++ ++P++I++ ++ A
Sbjct: 345 QTFLMISRKDLISWNAILDAFTESGCETHLVNLLHWM--LREGIRPDSITILTIIQYYAA 402
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTA--------------CGFVICSCSVFNQLST-RDVVV 255
V VK K H Y +R + A CG + + ++F LS R+VV
Sbjct: 403 VSRVKKVKETHSYSIRFGLLQGDAGPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVT 462
Query: 256 WNSIISAFVRSGQVVDA-------------------------------LDLLRDVIVANV 284
NS+IS +V S DA L L ++ +
Sbjct: 463 CNSMISGYVNSSSHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGM 522
Query: 285 KPNTVTIVSVLPACLKLAALPQGLGTGSFVWN----------ALIDMYGRCGAIQKSRKI 334
KP+ VTI+S+LPAC +A++ +V A IDMY +CG++ + K+
Sbjct: 523 KPDIVTIMSILPACAHMASVHMLRQCHGYVIRACFNDVRLNGAFIDMYSKCGSVFGAYKL 582
Query: 335 FVLMPHKNLVSWNVMI 350
F+ P K+LV + M+
Sbjct: 583 FLSSPQKDLVMFTAMV 598
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/349 (22%), Positives = 161/349 (46%), Gaps = 34/349 (9%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ + G +VNL + M+ +G+RPD + + + + + K+ + Y
Sbjct: 357 SWNAILDAFTESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHSY- 415
Query: 92 ISIKF---EGNA--CVKRPLLDLFIKCGRMEITSGLFEEMDQ--DFLVNNSLIDFYAKCR 144
SI+F +G+A + +LD + KCG M+ +F + + + + NS+I Y
Sbjct: 416 -SIRFGLLQGDAGPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVNSS 474
Query: 145 YLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGV 204
++ F+ + + DL +WN M+ YA F ++ +L E++ M+P+ +++ +
Sbjct: 475 SHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQ--GQGMKPDIVTIMSI 532
Query: 205 LAACAQVKGVKLGKAIHGYVLRH----------HIHLSTACGFVICSCSVFNQLSTRDVV 254
L ACA + V + + HGYV+R I + + CG V + +F +D+V
Sbjct: 533 LPACAHMASVHMLRQCHGYVIRACFNDVRLNGAFIDMYSKCGSVFGAYKLFLSSPQKDLV 592
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV 314
++ +++ F G +AL + ++ VKP+ V I +VL AC + +G + +
Sbjct: 593 MFTAMVGGFAMHGMGEEALRIFSYMLELGVKPDHVIITAVLFACSHAGLVDEGWKIFNSI 652
Query: 315 ------------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ ++D+ R G I+ + MP N W ++
Sbjct: 653 EKVHGFQPTMEQYACVVDLLARGGRIKDAYTFVTRMPIEANANIWGTLL 701
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 126/252 (50%), Gaps = 40/252 (15%)
Query: 136 LIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFRE---EVTNLLDEMEMIQT 192
L++ YAK L + F ++ Q+D V WN +L+G L GF+ EV L M M+
Sbjct: 19 LLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSG--LAGFQSHEAEVMRLFRAMHMVN- 75
Query: 193 DMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICS--------CS- 243
+ +PN+++++ VL CA+++ GK++H YV++ + T G + S CS
Sbjct: 76 EAKPNSVTIAIVLPVCARLRE-DAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSD 134
Query: 244 ---VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
FN++ +DVV WN++I+ F + +A L ++ ++PN TI S+LP C
Sbjct: 135 AYAAFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVC-- 192
Query: 301 LAALPQGLG------------------TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
A+L + G V N+L+ Y R G ++K+ +F M ++
Sbjct: 193 -ASLEENAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRD 251
Query: 343 LVSWNVMISVYG 354
LVSWN +I+ Y
Sbjct: 252 LVSWNAIIAGYA 263
>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 989
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 156/343 (45%), Gaps = 54/343 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W M+ Y LG E +F M +G+ P+ + P + + C+ L +G+ ++ +I
Sbjct: 383 WNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVI 442
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F+ N V L+D++ K G ++ G+ +
Sbjct: 443 KSGFQFNVYVCSVLIDMYAKHGELDTARGILQ---------------------------- 474
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
+++++D+VSW AM+AGY E L EME ++ + I S ++ACA ++
Sbjct: 475 --RLREEDVVSWTAMIAGYTQHDLFAEALKLFQEME--NQGIRSDNIGFSSAISACAGIQ 530
Query: 213 GVKLGKAIHG--YVLRHHIHLSTA---------CGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ G+ IH Y+ + LS CG + F ++ +D + WN++IS
Sbjct: 531 ALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALIS 590
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTG--- 311
F +SG +AL + + A V+ N T S + A A + QG + TG
Sbjct: 591 GFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDS 650
Query: 312 -SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ N LI +Y +CG+I+ +++ F MP KN+VSWN MI+ Y
Sbjct: 651 ETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGY 693
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 159/330 (48%), Gaps = 55/330 (16%)
Query: 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELK-DYRVGKDVYDYMISIKFEGNACVKRPL 106
+++ LF LMI + V PD V +ACS K ++V + ++ +I F + V PL
Sbjct: 94 QVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPL 153
Query: 107 LDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNA 166
+DL+ K G +++ +FE + FL KD VSW A
Sbjct: 154 IDLYSKNGHVDLAKLVFERL---FL---------------------------KDSVSWVA 183
Query: 167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR 226
M++G + G +E L +M ++ + P S VL+AC +++ KLG+ +HG++++
Sbjct: 184 MISGLSQNGREDEAILLFCQMH--KSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVK 241
Query: 227 HH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDL 275
+ L + G +I + +F+++ RD + +NS+IS + G AL L
Sbjct: 242 WGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQL 301
Query: 276 LRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLGTGSFVWNALIDMYGR 324
+ + +KP+ VT+ S+L AC + A + G+ + + +L+D+Y +
Sbjct: 302 FEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVK 361
Query: 325 CGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
C I+ + + F+ +N+V WNVM+ YG
Sbjct: 362 CFDIETAHEYFLTTETENVVLWNVMLVAYG 391
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/397 (21%), Positives = 168/397 (42%), Gaps = 77/397 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++LG Q+H +I G + ++ S L++++ +WT+M+
Sbjct: 431 LDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAG 490
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y + E + LF M ++G+R D+ AC+ ++ G+ ++
Sbjct: 491 YTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIH----------- 539
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
SG E D + N+L+ YA+C + ++ F KI K
Sbjct: 540 ---------------AQSYISGYSE----DLSIGNALVSLYARCGRAQDAYLAFEKIDAK 580
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D +SWNA+++G+A G EE + +M Q ++ N + ++A A +K GK
Sbjct: 581 DNISWNALISGFAQSGHCEEALQVFSQMN--QAGVEANLFTFGSAVSATANTANIKQGKQ 638
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH +++ I L + CG + + F ++ ++VV WN++I+ + + G
Sbjct: 639 IHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGY 698
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WN 316
+A+ L ++ + PN VT V VL AC + + +GL + +
Sbjct: 699 GSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYV 758
Query: 317 ALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
++D+ GR + +R+ MP + + W ++S
Sbjct: 759 CVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSA 795
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/344 (23%), Positives = 159/344 (46%), Gaps = 54/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ + G +E + LF M V P +V V AC++++ +++G+ ++ ++
Sbjct: 180 SWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFI 239
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ K G + + V N+L+ Y++ L +
Sbjct: 240 V-------------------KWG-----------LSSETFVCNALVTLYSRWGNLIAAEQ 269
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FSK+ ++D +S+N++++G A GF + L ++M++ M+P+ ++++ +L+ACA V
Sbjct: 270 IFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQL--DCMKPDCVTVASLLSACASV 327
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
GK +H YV++ + L C + + F T +VV+WN ++
Sbjct: 328 GAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVML 387
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLG 309
A+ + G + ++ + + + + PN T S+L C L AL G
Sbjct: 388 VAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQ 447
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+V + LIDMY + G + +R I + +++VSW MI+ Y
Sbjct: 448 FNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGY 491
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 84/396 (21%), Positives = 163/396 (41%), Gaps = 75/396 (18%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGM--------------YNVL---- 43
+LG Q+H ++ G+ F+ + L+ ++ W +++ YN L
Sbjct: 230 KLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGL 289
Query: 44 ---GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G+ + + LF M ++PD + AC+ + GK ++ Y+I + +
Sbjct: 290 AQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDL 349
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
++ LLDL++KC +E +H F + ++
Sbjct: 350 IIEGSLLDLYVKCFDIE------------------------------TAHEYFLTTETEN 379
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+V WN ML Y G E + +M++ + PN + +L C + + LG+ I
Sbjct: 380 VVLWNVMLVAYGQLGNLSESYWIFLQMQI--EGLMPNQYTYPSILRTCTSLGALDLGEQI 437
Query: 221 HGYVLRHHIHLST-ACGFVI----------CSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H V++ + C +I + + +L DVV W ++I+ + +
Sbjct: 438 HTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLF 497
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG--LGTGSF---------VWNAL 318
+AL L +++ ++ + + S + AC + AL QG + S+ + NAL
Sbjct: 498 AEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNAL 557
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ +Y RCG Q + F + K+ +SWN +IS +
Sbjct: 558 VSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFA 593
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 133/319 (41%), Gaps = 55/319 (17%)
Query: 56 MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR 115
M ++G+R + +++ C K ++ + F+G + L+D+++ G
Sbjct: 1 MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60
Query: 116 MEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGG 175
++ LF++ I ++ WN +++G
Sbjct: 61 VDNAIKLFDD------------------------------IPSSNVSFWNKVISGLLAKK 90
Query: 176 FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG-VKLGKAIHGYVLRHH------ 228
+V L MI ++ P+ + + VL AC+ K ++ + IH ++ H
Sbjct: 91 LASQVLGLFS--LMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPL 148
Query: 229 -----IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283
I L + G V + VF +L +D V W ++IS ++G+ +A+ L + +
Sbjct: 149 VCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSA 208
Query: 284 VKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSR 332
V P SVL AC K+ + GL + +FV NAL+ +Y R G + +
Sbjct: 209 VIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAE 268
Query: 333 KIFVLMPHKNLVSWNVMIS 351
+IF M ++ +S+N +IS
Sbjct: 269 QIFSKMHRRDRISYNSLIS 287
>gi|125559296|gb|EAZ04832.1| hypothetical protein OsI_27010 [Oryza sativa Indica Group]
Length = 700
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 166/344 (48%), Gaps = 54/344 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT+M+G G + E+V+LF M +G D + V AC + +VG ++
Sbjct: 223 WTAMIGGTVHSGNWLEVVDLFNHMRSEGFGVDSLIAATVISACGRAGELQVGTALHG--- 279
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
C SG D V+N+L+D Y KC ++++ C
Sbjct: 280 --------------------CAVKSGASG-------DIYVSNALVDMYCKCGCVEMADCL 312
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F KD+VSW++++ GY+ G +L EMI + PN+ +L+ +L + +K
Sbjct: 313 FWSTNSKDVVSWSSLIVGYSQNGMHNVSVSLF--CEMISLGINPNSSTLASILPCLSVLK 370
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ GK IH + +RH I L + G + + ++F +D+ +WNS+++
Sbjct: 371 LIRSGKEIHCFSIRHGLERSEFVVSALIDLYSKQGLIRVAETIFWLTLDKDLAIWNSMVA 430
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW------ 315
+ +G A LR + +KP+ VT+VSVLP C + L QG ++V
Sbjct: 431 GYAVNGYSDSAFCALRLLQKVGLKPDHVTVVSVLPLCNQHHMLIQGKELHAYVIKYCINS 490
Query: 316 -----NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
NAL+DMY +CG ++ ++++F LM +N V++N++IS +G
Sbjct: 491 VCSVNNALLDMYCKCGFLEVAKEVFQLMTERNTVTYNILISSFG 534
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 165/345 (47%), Gaps = 51/345 (14%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +++ G + E + +F+ M++ G V D F P V KAC+ L G+ V++ +
Sbjct: 117 WNAVIKGLVDAGRFSEALEMFWGMVNDGSVAVDGFTYPPVIKACAALGAVAQGRKVWEMV 176
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ GNA RP ++F++C +L+D +AKC L +
Sbjct: 177 EADIASGNA---RP--NVFVQC---------------------ALVDMFAKCGCLDEARN 210
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +DL +W AM+ G G EV +L + M +++ + V++AC +
Sbjct: 211 VFESMQVRDLAAWTAMIGGTVHSGNWLEVVDLFNHMR--SEGFGVDSLIAATVISACGRA 268
Query: 212 KGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+++G A+HG YV + + CG V + +F +++DVV W+S+I
Sbjct: 269 GELQVGTALHGCAVKSGASGDIYVSNALVDMYCKCGCVEMADCLFWSTNSKDVVSWSSLI 328
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP--ACLKLA---------ALPQGLG 309
+ ++G ++ L ++I + PN+ T+ S+LP + LKL ++ GL
Sbjct: 329 VGYSQNGMHNVSVSLFCEMISLGINPNSSTLASILPCLSVLKLIRSGKEIHCFSIRHGLE 388
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
FV +ALID+Y + G I+ + IF L K+L WN M++ Y
Sbjct: 389 RSEFVVSALIDLYSKQGLIRVAETIFWLTLDKDLAIWNSMVAGYA 433
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 154/344 (44%), Gaps = 59/344 (17%)
Query: 14 CG-VEL--CAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPK 70
CG VE+ C F + +V +W+S++ Y+ G + V+LF MI G+ P+
Sbjct: 303 CGCVEMADCLFWSTNSKDVV-SWSSLIVGYSQNGMHNVSVSLFCEMISLGINPNSSTLAS 361
Query: 71 VYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDF 130
+ S LK R GK+++ + I E +F
Sbjct: 362 ILPCLSVLKLIRSGKEIHCFSIRHGLE-----------------------------RSEF 392
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
+V+ +LID Y+K ++V+ F KDL WN+M+AGYA+ G+ + L ++ +
Sbjct: 393 VVS-ALIDLYSKQGLIRVAETIFWLTLDKDLAIWNSMVAGYAVNGYSDSAFCALRLLQKV 451
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVI 239
++P+ +++ VL C Q + GK +H YV+++ I+ + CGF+
Sbjct: 452 --GLKPDHVTVVSVLPLCNQHHMLIQGKELHAYVIKYCINSVCSVNNALLDMYCKCGFLE 509
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ VF ++ R+ V +N +IS+F + AL + + P+ VT V++L C
Sbjct: 510 VAKEVFQLMTERNTVTYNILISSFGKHNHEDQALSFFDLMKRDGIAPDKVTFVALLSCCS 569
Query: 300 KLAALPQGL------------GTGSFVWNALIDMYGRCGAIQKS 331
+ +GL ++ ++D+Y RCG + ++
Sbjct: 570 HAGLIDKGLHLYHSMLHDYNISPEKEHYSCIVDLYSRCGKLDEA 613
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 17/155 (10%)
Query: 213 GVKLGKAIHGYVLRHHIHLSTA-CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V +G HG VL + + A G V + VF+ + R+ WN++I V +G+ +
Sbjct: 73 AVLVGGHGHGTVLVAQLVRAYAKLGDVAHALRVFDGMPRRNSFAWNAVIKGLVDAGRFSE 132
Query: 272 ALDLLRDVIV-ANVKPNTVTIVSVLPACLKLAALPQG----------LGTGS-----FVW 315
AL++ ++ +V + T V+ AC L A+ QG + +G+ FV
Sbjct: 133 ALEMFWGMVNDGSVAVDGFTYPPVIKACAALGAVAQGRKVWEMVEADIASGNARPNVFVQ 192
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
AL+DM+ +CG + ++R +F M ++L +W MI
Sbjct: 193 CALVDMFAKCGCLDEARNVFESMQVRDLAAWTAMI 227
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 104/262 (39%), Gaps = 57/262 (21%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G ++H I G+E F+ S L++++ W SM+ Y V
Sbjct: 375 GKEIHCFSIRHGLERSEFVVSALIDLYSKQGLIRVAETIFWLTLDKDLAIWNSMVAGYAV 434
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
GY + L+ G++PDH V C++ GK+++ Y+I V
Sbjct: 435 NGYSDSAFCALRLLQKVGLKPDHVTVVSVLPLCNQHHMLIQGKELHAYVIKYCINSVCSV 494
Query: 103 KRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLK-------------- 147
LLD++ KCG +E+ +F+ M +++ + N LI + K +
Sbjct: 495 NNALLDMYCKCGFLEVAKEVFQLMTERNTVTYNILISSFGKHNHEDQALSFFDLMKRDGI 554
Query: 148 ----------VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNL---------LDEME 188
+S C + + K L +++ML Y + +E + + LDE
Sbjct: 555 APDKVTFVALLSCCSHAGLIDKGLHLYHSMLHDYNISPEKEHYSCIVDLYSRCGKLDEAW 614
Query: 189 MIQTDM--QPNTISLSGVLAAC 208
++M +P L G+LAAC
Sbjct: 615 CFMSNMAEEPEIDVLGGLLAAC 636
>gi|302809659|ref|XP_002986522.1| hypothetical protein SELMODRAFT_124407 [Selaginella moellendorffii]
gi|300145705|gb|EFJ12379.1| hypothetical protein SELMODRAFT_124407 [Selaginella moellendorffii]
Length = 625
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 98/414 (23%), Positives = 180/414 (43%), Gaps = 100/414 (24%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y+ G+ EE++ LF M V PD + ACS ++ +GK+V+ +
Sbjct: 75 SWNSMVVAYSQHGHGEEMLELFRKM---DVEPDSITYASILGACSAMELLELGKEVHARV 131
Query: 92 ISIKFEGNACVKRPLLDLF-------------------------------IKCGRMEITS 120
+F+ + + L++++ ++ GR
Sbjct: 132 SRSRFKSDPALAAALINMYSKCGVLESARRVFDGIQSVDPSPWNAMISGLVQHGRAREAL 191
Query: 121 GLFEEM----------------------------------------DQDFLVNNSLIDFY 140
GLFE M D+D +V ++ + Y
Sbjct: 192 GLFERMKAESVRIDKVSYLTILSACCALEDLHEGIRIHEHASACGMDKDLVVETAVFNMY 251
Query: 141 AKCRYLKVSHCKFSKIKQK-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI 199
+KCR + ++ F + +K ++VSWN+M+A YA G E L + M+ + +QP+ I
Sbjct: 252 SKCRQVDLARKMFDGMNEKTNVVSWNSMIAAYAQSGRGREALELYELMK--EEGVQPDDI 309
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQL 248
+ +G L AC G G IH + +R + L TA CG + + S F ++
Sbjct: 310 TYAGALGACTSYGGSAKGAEIHSRITESKIRTDVFLDTAIVNMYAKCGELETAMSYFEKM 369
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
++ V W++++ AF++ G +ALDL ++ +P+ +T+ L AC ++ AL +G
Sbjct: 370 RRKNAVTWSAMVGAFIQQGYDREALDLYLRMVSEGFQPSEITLAGALAACSRIGALQEGK 429
Query: 309 GTGS------------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
S F+ N+L++MY +CG + + +F + ++ SWN +I
Sbjct: 430 AIHSRIQATETLQNCLFLQNSLLNMYAKCGCLAIANTMFSNLQRRDSFSWNTII 483
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 92/394 (23%), Positives = 166/394 (42%), Gaps = 79/394 (20%)
Query: 4 GIQVHAHLIVCG------VELCAF----------LGSQLLEVF------CNWTSMMGMYN 41
GI++H H CG VE F L ++ + +W SM+ Y
Sbjct: 225 GIRIHEHASACGMDKDLVVETAVFNMYSKCRQVDLARKMFDGMNEKTNVVSWNSMIAAYA 284
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G E + L+ LM ++GV+PD AC+ G +++ + K
Sbjct: 285 QSGRGREALELYELMKEEGVQPDDITYAGALGACTSYGGSAKGAEIHSRITESKIR---- 340
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
D ++ ++++ YAKC L+ + F K+++K+
Sbjct: 341 --------------------------TDVFLDTAIVNMYAKCGELETAMSYFEKMRRKNA 374
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
V+W+AM+ + G+ E +L + M+ QP+ I+L+G LAAC+++ ++ GKAIH
Sbjct: 375 VTWSAMVGAFIQQGYDREALDLY--LRMVSEGFQPSEITLAGALAACSRIGALQEGKAIH 432
Query: 222 G------------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
++ +++ CG + + ++F+ L RD WN+II G V
Sbjct: 433 SRIQATETLQNCLFLQNSLLNMYAKCGCLAIANTMFSNLQRRDSFSWNTIIVGHAHHGDV 492
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-----TGSFV-------WNA 317
+ L L +++ V P+ VT VL AC L +G TG + +
Sbjct: 493 DEVLSLHGEMVQDGVDPDYVTFACVLLACSHAGLLDRGRSHFLSMTGDYCIKPMLDHYEC 552
Query: 318 LIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
L+D+ R G +++ + + MP V+W ++
Sbjct: 553 LVDVLSRAGWAREAEALAMAMPFTPRPVTWTTLL 586
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 144/286 (50%), Gaps = 37/286 (12%)
Query: 94 IKFEG--NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F G ++C R LD + I + F + +V NSL+ Y + L+ +
Sbjct: 11 VTFSGVASSCSGREELDTI----QASIAASDFH---SNVVVKNSLVSAYTRSGDLRSARK 63
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F I+ KDL+SWN+M+ Y+ G EE+ L +M D++P++I+ + +L AC+ +
Sbjct: 64 VFDSIENKDLISWNSMVVAYSQHGHGEEMLELFRKM-----DVEPDSITYASILGACSAM 118
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ ++LGK +H V R I++ + CG + + VF+ + + D WN++I
Sbjct: 119 ELLELGKEVHARVSRSRFKSDPALAAALINMYSKCGVLESARRVFDGIQSVDPSPWNAMI 178
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------- 313
S V+ G+ +AL L + +V+ + V+ +++L AC L L +G+
Sbjct: 179 SGLVQHGRAREALGLFERMKAESVRIDKVSYLTILSACCALEDLHEGIRIHEHASACGMD 238
Query: 314 ----VWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISVYG 354
V A+ +MY +C + +RK+F M K N+VSWN MI+ Y
Sbjct: 239 KDLVVETAVFNMYSKCRQVDLARKMFDGMNEKTNVVSWNSMIAAYA 284
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 90/182 (49%), Gaps = 22/182 (12%)
Query: 189 MIQTDMQPNTISLSGVLAACA------QVKGVKLGKAIHGYVLRHHIHLS--TACGFVIC 240
M+ +PN ++ SGV ++C+ ++ H V+ + +S T G +
Sbjct: 1 MLLEGFRPNGVTFSGVASSCSGREELDTIQASIAASDFHSNVVVKNSLVSAYTRSGDLRS 60
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ VF+ + +D++ WNS++ A+ + G + L+L R + +V+P+++T S+L AC
Sbjct: 61 ARKVFDSIENKDLISWNSMVVAYSQHGHGEEMLELFRKM---DVEPDSITYASILGACSA 117
Query: 301 LAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
+ L G + + ALI+MY +CG ++ +R++F + + WN M
Sbjct: 118 MELLELGKEVHARVSRSRFKSDPALAAALINMYSKCGVLESARRVFDGIQSVDPSPWNAM 177
Query: 350 IS 351
IS
Sbjct: 178 IS 179
>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 785
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 105/397 (26%), Positives = 181/397 (45%), Gaps = 77/397 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+E G +VH+ + G+ + LG++L+ ++ N W +M
Sbjct: 73 LEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSE 132
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG- 98
Y +G Y E V LF M + G+R D + V K + R K V+ Y++ + F
Sbjct: 133 YAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSY 192
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
NA V NSLI Y KC ++ + F ++
Sbjct: 193 NAVV-------------------------------NSLIAAYFKCGEVESARILFDELSD 221
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+D+VSWN+M++G + GF ++M+ + ++ +L VL ACA V + LG+
Sbjct: 222 RDVVSWNSMISGCTMNGFSRNGLEFF--IQMLNLGVDVDSATLVNVLVACANVGNLTLGR 279
Query: 219 AIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
A+H Y ++ + + + CG + + VF ++ +V W SII+A VR G
Sbjct: 280 ALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREG 339
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWN 316
+A+ L ++ ++P+ + SV+ AC +L +G +G+ V N
Sbjct: 340 LHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSN 399
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
AL++MY +CG+++++ IF +P KN+VSWN MI Y
Sbjct: 400 ALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGY 436
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 168/345 (48%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ + G+ + F M++ GV D V AC+ + + +G+ ++ Y
Sbjct: 226 SWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYG 285
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F G + NN+L+D Y+KC L ++
Sbjct: 286 VKAGFSGGV------------------------------MFNNTLLDMYSKCGNLNGANE 315
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K+ + +VSW +++A + G E L DEM+ ++P+ +++ V+ ACA
Sbjct: 316 VFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQ--SKGLRPDIYAVTSVVHACACS 373
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ G+ +H ++ +++ +++ CG + + +F+QL +++V WN++I
Sbjct: 374 NSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMI 433
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGSF 313
+ ++ +AL L D + +KP+ VT+ VLPAC LAAL +G L G F
Sbjct: 434 GGYSQNSLPNEALQLFLD-MQKQLKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYF 492
Query: 314 ----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V AL+DMY +CG + ++++F ++P K+++ W VMI+ YG
Sbjct: 493 SDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYG 537
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 161/344 (46%), Gaps = 57/344 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTS++ + G + E + LF M KG+RPD + V AC+ G++V+++
Sbjct: 327 SWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNH- 385
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+K+ M + V+N+L++ YAKC ++ ++
Sbjct: 386 ----------IKK-------------------NNMGSNLPVSNALMNMYAKCGSMEEANL 416
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS++ K++VSWN M+ GY+ E L +M Q ++P+ ++++ VL ACA +
Sbjct: 417 IFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDM---QKQLKPDDVTMACVLPACAGL 473
Query: 212 KGVKLGKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
++ G+ IHG++LR +H++ A CG ++ + +F+ + +D+++W +I
Sbjct: 474 AALEKGREIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMI 533
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
+ + G +A+ + VA ++P + S+L AC L +G +
Sbjct: 534 AGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSECNI 593
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMIS 351
+ ++D+ R G + ++ K MP K + W ++S
Sbjct: 594 EPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLS 637
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 35/206 (16%)
Query: 14 CG-VELCAFLGSQL-LEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKV 71
CG +E + SQL ++ +W +M+G Y+ E + LF L + K ++PD V
Sbjct: 408 CGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLF-LDMQKQLKPDDVTMACV 466
Query: 72 YKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFL 131
AC+ L G++++ +++ K DL + C
Sbjct: 467 LPACAGLAALEKGREIHGHILR---------KGYFSDLHVAC------------------ 499
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
+L+D Y KC L ++ F I +KD++ W M+AGY + GF +E + ++M +
Sbjct: 500 ---ALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMRV-- 554
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLG 217
++P S + +L AC +K G
Sbjct: 555 AGIEPEESSFTSILYACTHSGLLKEG 580
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 97/199 (48%), Gaps = 28/199 (14%)
Query: 179 EVTNLLDEMEMI----QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA 234
E+ +L + M+++ +++++ NT VL CA++K ++ GK +H + + + +
Sbjct: 36 EMGDLRNAMKLLSRSQRSELELNT--YCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEV 93
Query: 235 -----------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283
CG ++ +F+ + + +WN ++S + + G +++ L +
Sbjct: 94 LGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELG 153
Query: 284 VKPNTVTIVSVLPA---------CLKLAALPQGLGTGSF--VWNALIDMYGRCGAIQKSR 332
++ ++ T VL C ++ LG GS+ V N+LI Y +CG ++ +R
Sbjct: 154 IRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESAR 213
Query: 333 KIFVLMPHKNLVSWNVMIS 351
+F + +++VSWN MIS
Sbjct: 214 ILFDELSDRDVVSWNSMIS 232
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 14/136 (10%)
Query: 231 LSTACGFVICSCSVFNQLSTRDVVV-WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289
+ +CG + + ++ + +V V N+ I F G + +A+ LL + ++ NT
Sbjct: 1 MDLSCGSSVGVSATLSETTHNNVTVDKNAKICKFCEMGDLRNAMKLLSRSQRSELELNTY 60
Query: 290 TIVSVLPACLKLAALPQGLGTGSFVWN-----------ALIDMYGRCGAIQKSRKIFVLM 338
SVL C +L +L G S + + L+ MY CG + K R+IF +
Sbjct: 61 --CSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGI 118
Query: 339 PHKNLVSWNVMISVYG 354
+ + WN+++S Y
Sbjct: 119 LNDKIFLWNLLMSEYA 134
>gi|225463207|ref|XP_002267970.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08490-like [Vitis vinifera]
Length = 868
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/405 (24%), Positives = 189/405 (46%), Gaps = 84/405 (20%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC----------------------NWTSMMGM 39
+ G VH+++I G+E G+ L+ ++ +W +++
Sbjct: 158 DAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAG 217
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD---YRVGKDVYDYMISIKF 96
++ + EE LF+ M+ ++P++ + C+ L++ YR GK+V+ +++
Sbjct: 218 FSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEENAGYRYGKEVHCHVLR--- 274
Query: 97 EGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKI 156
RME+ +D V NSL+ FY + ++ + F +
Sbjct: 275 ------------------RMELV--------EDVSVINSLMSFYLRIGQMEKAEFLFRNM 308
Query: 157 KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKL 216
K +DLVSWNA++AGYA G + L E ++T ++P++++L VL ACA V +++
Sbjct: 309 KSRDLVSWNAIIAGYASNGEWLKALELFSEFISLET-IKPDSVTLVSVLPACAHVHNLQV 367
Query: 217 GKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
K IHGY++RH + C + + F +S +D++ WN+I+ AF
Sbjct: 368 AKGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFT 427
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA---------------ALPQGLG 309
SG ++LL ++ ++P+++TI++++ ++ L QG
Sbjct: 428 ESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHSYSIRFGLLQG-D 486
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIF-VLMPHKNLVSWNVMISVY 353
G + N ++D Y +CG ++ + IF L +N+V+ N MIS Y
Sbjct: 487 AGPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGY 531
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/348 (26%), Positives = 165/348 (47%), Gaps = 63/348 (18%)
Query: 36 MMGMYNVLGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI 94
+ G+ + E++ LF M + +P+ V C+ L++ GK V+ Y+I
Sbjct: 112 LSGLAGFQSHEAEVMRLFRAMHMVNEAKPNSVTIAIVLPVCARLRE-DAGKSVHSYVIKS 170
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL-KVSHCKF 153
E + L N+LI YAKC + ++ F
Sbjct: 171 GLESHT------------------------------LAGNALISMYAKCGLVCSDAYAAF 200
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK- 212
++I+ KD+VSWNA++AG++ F EE L M++ +QPN +++ +L CA ++
Sbjct: 201 NRIEFKDVVSWNAVIAGFSENKFTEEAFKLFH--AMLKGPIQPNYATIASILPVCASLEE 258
Query: 213 --GVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
G + GK +H +VLR + G + + +F + +RD+V WN+
Sbjct: 259 NAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWNA 318
Query: 259 IISAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVLPACLKLAALP------------ 305
II+ + +G+ + AL+L + I + +KP++VT+VSVLPAC + L
Sbjct: 319 IIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRH 378
Query: 306 QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
GL + V NAL+ Y +C Q + + F+++ K+L+SWN ++ +
Sbjct: 379 PGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAF 426
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 99/376 (26%), Positives = 164/376 (43%), Gaps = 88/376 (23%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W +++ Y G + + + LF I + ++PD V AC+ + + +V K ++ Y
Sbjct: 315 SWNAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGY 374
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+I + P GL E D V N+L+ FYAKC Y + +
Sbjct: 375 II----------RHP---------------GLRE----DTSVGNALLSFYAKCNYTQAAL 405
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F I +KDL+SWNA+L + G + NLL M ++ ++P++I++ ++ A
Sbjct: 406 QTFLMISRKDLISWNAILDAFTESGCETHLVNLLHWM--LREGIRPDSITILTIIQYYAA 463
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTA--------------CGFVICSCSVFNQLST-RDVVV 255
V VK K H Y +R + A CG + + ++F LS R+VV
Sbjct: 464 VSRVKKVKETHSYSIRFGLLQGDAGPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVT 523
Query: 256 WNSIISAFVRSGQVVDA-------------------------------LDLLRDVIVANV 284
NS+IS +V S DA L L ++ +
Sbjct: 524 CNSMISGYVNSSSHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGM 583
Query: 285 KPNTVTIVSVLPACLKLAALPQGLGTGSFVWN----------ALIDMYGRCGAIQKSRKI 334
KP+ VTI+S+LPAC +A++ +V A IDMY +CG++ + K+
Sbjct: 584 KPDIVTIMSILPACAHMASVHMLRQCHGYVIRACFNDVRLNGAFIDMYSKCGSVFGAYKL 643
Query: 335 FVLMPHKNLVSWNVMI 350
F+ P K+LV + M+
Sbjct: 644 FLSSPQKDLVMFTAMV 659
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 157/344 (45%), Gaps = 72/344 (20%)
Query: 46 YEEIVNLFYLMI--DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
++E ++LF + G +P+ + + K+C + R G ++ Y + + +
Sbjct: 18 HDEALSLFLERVRCSVGYKPNGQILAALLKSCVAISAIRFGSVLHGYALKLGHVSCQSLC 77
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
+ LL+L+ K G ++ + LF EMD Q+D V
Sbjct: 78 KGLLNLYAKSGALDYCNKLFGEMD------------------------------QRDPVI 107
Query: 164 WNAMLAGYALGGFRE---EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
WN +L+G L GF+ EV L M M+ + +PN+++++ VL CA+++ GK++
Sbjct: 108 WNIVLSG--LAGFQSHEAEVMRLFRAMHMVN-EAKPNSVTIAIVLPVCARLRE-DAGKSV 163
Query: 221 HGYVLRHHIHLSTACGFVICS--------CS----VFNQLSTRDVVVWNSIISAFVRSGQ 268
H YV++ + T G + S CS FN++ +DVV WN++I+ F +
Sbjct: 164 HSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAGFSENKF 223
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG------------------T 310
+A L ++ ++PN TI S+LP C A+L + G
Sbjct: 224 TEEAFKLFHAMLKGPIQPNYATIASILPVC---ASLEENAGYRYGKEVHCHVLRRMELVE 280
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V N+L+ Y R G ++K+ +F M ++LVSWN +I+ Y
Sbjct: 281 DVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWNAIIAGYA 324
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/349 (22%), Positives = 161/349 (46%), Gaps = 34/349 (9%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ + G +VNL + M+ +G+RPD + + + + + K+ + Y
Sbjct: 418 SWNAILDAFTESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHSY- 476
Query: 92 ISIKF---EGNA--CVKRPLLDLFIKCGRMEITSGLFEEMDQ--DFLVNNSLIDFYAKCR 144
SI+F +G+A + +LD + KCG M+ +F + + + + NS+I Y
Sbjct: 477 -SIRFGLLQGDAGPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVNSS 535
Query: 145 YLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGV 204
++ F+ + + DL +WN M+ YA F ++ +L E++ M+P+ +++ +
Sbjct: 536 SHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQ--GQGMKPDIVTIMSI 593
Query: 205 LAACAQVKGVKLGKAIHGYVLRH----------HIHLSTACGFVICSCSVFNQLSTRDVV 254
L ACA + V + + HGYV+R I + + CG V + +F +D+V
Sbjct: 594 LPACAHMASVHMLRQCHGYVIRACFNDVRLNGAFIDMYSKCGSVFGAYKLFLSSPQKDLV 653
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV 314
++ +++ F G +AL + ++ VKP+ V I +VL AC + +G + +
Sbjct: 654 MFTAMVGGFAMHGMGEEALRIFSYMLELGVKPDHVIITAVLFACSHAGLVDEGWKIFNSI 713
Query: 315 ------------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ ++D+ R G I+ + MP N W ++
Sbjct: 714 EKVHGFQPTMEQYACVVDLLARGGRIKDAYTFVTRMPIEANANIWGTLL 762
>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 908
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 104/396 (26%), Positives = 186/396 (46%), Gaps = 75/396 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+E G +VH+ +I G+ + LG++L+ ++ N W +M
Sbjct: 110 LEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSE 169
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y +G + E V+LF M GV + + V K + L + K V+ Y++ + F N
Sbjct: 170 YAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSN 229
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V NSLI Y K ++ +H F ++ +
Sbjct: 230 TAVV------------------------------NSLIAAYFKFGGVESAHNLFDELSEP 259
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSWN+M+ G + GF + ++M+ ++ + +L VL ACA + + LG+A
Sbjct: 260 DVVSWNSMINGCVVNGFSGNGLEIF--IQMLILGVEVDLTTLVSVLVACANIGNLSLGRA 317
Query: 220 IHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+HG+ ++ + + + CG + + VF ++ +V W SII+A+VR G
Sbjct: 318 LHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGL 377
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNA 317
DA+ L ++ V+P+ T+ S++ AC ++L +G +G+ V NA
Sbjct: 378 YSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNA 437
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
LI+MY +CG+++++R +F +P K++VSWN MI Y
Sbjct: 438 LINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGY 473
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 100/371 (26%), Positives = 178/371 (47%), Gaps = 56/371 (15%)
Query: 7 VHAHLIVCGVELCAFLGSQLLEV-FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH 65
+ A+ GVE L +L E +W SM+ V G+ + +F M+ GV D
Sbjct: 237 IAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDL 296
Query: 66 FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEE 125
V AC+ + + +G+ ++ + + AC
Sbjct: 297 TTLVSVLVACANIGNLSLGRALHGFGVK------AC------------------------ 326
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
++ + +N+L+D Y+KC L + F K+ +VSW +++A Y G + L D
Sbjct: 327 FSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFD 386
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTA 234
EM+ ++P+ +++ ++ ACA + G+ +H YV+++ I++
Sbjct: 387 EMQ--SKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAK 444
Query: 235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV 294
CG V + VF+++ +D+V WN++I + ++ +AL+L D + KP+ +T+ V
Sbjct: 445 CGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLD-MQKQFKPDDITMACV 503
Query: 295 LPACLKLAALPQG-------LGTGSF----VWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
LPAC LAAL +G L G F V AL+DMY +CG + ++ +F ++P K+L
Sbjct: 504 LPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDL 563
Query: 344 VSWNVMISVYG 354
+SW VMI+ YG
Sbjct: 564 ISWTVMIAGYG 574
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 158/344 (45%), Gaps = 57/344 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTS++ Y G Y + + LF M KGVRPD + + AC+ G+DV+ Y+
Sbjct: 364 SWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYV 423
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I M + V N+LI+ YAKC ++ +
Sbjct: 424 IK------------------------------NGMGSNLPVTNALINMYAKCGSVEEARL 453
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FSKI KD+VSWN M+ GY+ E L +M Q +P+ I+++ VL ACA +
Sbjct: 454 VFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDM---QKQFKPDDITMACVLPACAGL 510
Query: 212 KGVKLGKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ G+ IHG++LR +H++ A CG ++ + +F+ + +D++ W +I
Sbjct: 511 AALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMI 570
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA--- 317
+ + G +A+ ++ +A ++P+ + ++L AC L +G + + N
Sbjct: 571 AGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGV 630
Query: 318 ---------LIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMIS 351
++D+ R G + K+ K MP K + W V++S
Sbjct: 631 EPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLS 674
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 79/174 (45%), Gaps = 22/174 (12%)
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQL 248
S VL CA+ K ++ GK +H ++ + I + A CG ++ +F+++
Sbjct: 96 SYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKI 155
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-- 306
V +WN ++S + + G +++ L + + V N T VL L + +
Sbjct: 156 MNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECK 215
Query: 307 ---------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
G G+ + V N+LI Y + G ++ + +F + ++VSWN MI+
Sbjct: 216 RVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMIN 269
>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
Length = 871
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 100/387 (25%), Positives = 163/387 (42%), Gaps = 100/387 (25%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W ++ LG+ E+++ L+ M G RPDH+ P V KAC E+ +R G V+ +
Sbjct: 113 WNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVF 172
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ FE N V N L+ Y +C + +
Sbjct: 173 ASGFEWNV------------------------------FVGNGLVSMYGRCGAWENARQV 202
Query: 153 FSKIKQK---DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F +++++ DLVSWN+++A Y GG + + M ++P+ +SL VL ACA
Sbjct: 203 FDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTE-DLGIRPDAVSLVNVLPACA 261
Query: 210 QVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
V GK +HGY LR + + CG + + VF ++ +DVV WN+
Sbjct: 262 SVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNA 321
Query: 259 IISAFVRSGQVVD-----------------------------------ALDLLRDVIVAN 283
+++ + + G+ D ALD+ R +++
Sbjct: 322 MVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCG 381
Query: 284 VKPNTVTIVSVLPACLKLAALPQG------------------LGTGSFVWNALIDMYGRC 325
+PN VT+VS+L C L G G V NALIDMY +C
Sbjct: 382 SEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKC 441
Query: 326 GAIQKSRKIFVLMPHKN--LVSWNVMI 350
+ + +R +F L+P K+ +V+W V+I
Sbjct: 442 KSPKAARAMFDLIPPKDRSVVTWTVLI 468
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 104/415 (25%), Positives = 186/415 (44%), Gaps = 66/415 (15%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF------------------------CNWTSMMGM 39
G VHA + G E F+G+ L+ ++ +W S++
Sbjct: 164 GASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAA 223
Query: 40 YNVLGYYEEIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
Y G + +F M D G+RPD V AC+ + + GK V+ Y +
Sbjct: 224 YMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFE 283
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
+ V ++D++ KCG ME + +FE M +D + N+++ Y++ + F KI+
Sbjct: 284 DVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIR 343
Query: 158 QK----DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG 213
++ ++V+W+A++AGYA G E ++ +M + + +PN ++L +L+ CA
Sbjct: 344 EEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGS--EPNVVTLVSLLSGCASAGT 401
Query: 214 VKLGKAIHGYVLRHHIHLS------------------TACGFVICSCSVFNQLSTRD--V 253
+ GK H + ++ ++L + C + ++F+ + +D V
Sbjct: 402 LLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSV 461
Query: 254 VVWNSIISAFVRSGQVVDALDLLRDVIVAN--VKPNTVTIVSVLPACLKLAALPQGLGTG 311
V W +I + G+ +AL+L ++ + V PN TI L AC +L AL G
Sbjct: 462 VTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIH 521
Query: 312 S------------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ FV N LIDMY + G + +R +F M +N VSW +++ YG
Sbjct: 522 AYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYG 576
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 91/409 (22%), Positives = 172/409 (42%), Gaps = 60/409 (14%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G QVH + + G+ F+G+ +++++ +W +M+ Y+
Sbjct: 269 GKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQ 328
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+G +++ + LF + ++ + + V ++ DV+ M+ E N
Sbjct: 329 IGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVT 388
Query: 103 KRPLLDLFIKCGRMEITSGL----------FEEMD--QDFLVNNSLIDFYAKCRYLKVSH 150
LL G + +E D D +V N+LID Y+KC+ K +
Sbjct: 389 LVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAAR 448
Query: 151 CKFSKIKQKD--LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
F I KD +V+W ++ G A G E L +M + PN ++S L AC
Sbjct: 449 AMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMAC 508
Query: 209 AQVKGVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVW 256
A++ ++ G+ IH YVLR+ I + + G V + VF+ + R+ V W
Sbjct: 509 ARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSW 568
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG------- 309
S+++ + G+ +AL + ++ + P+ VT V VL AC + QG+
Sbjct: 569 TSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNK 628
Query: 310 -----TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMISV 352
G+ + ++D+ R G + ++ ++ MP K + W ++S
Sbjct: 629 DFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSA 677
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 109/216 (50%), Gaps = 28/216 (12%)
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
WN ++ GF E+V L M+ + +P+ + VL AC ++ + G ++H
Sbjct: 113 WNQLIRRSVHLGFLEDVLQLYRRMQRL--GWRPDHYTFPFVLKACGEIPSFRCGASVHAV 170
Query: 224 VLRHH-----------IHLSTACGFVICSCSVFNQLSTR---DVVVWNSIISAFVRSGQV 269
V + + CG + VF+++ R D+V WNSI++A+++ G
Sbjct: 171 VFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDS 230
Query: 270 VDALDLLRDVIVA-NVKPNTVTIVSVLPACLKLAA-----------LPQGLGTGSFVWNA 317
+ A+ + + ++P+ V++V+VLPAC + A L GL FV NA
Sbjct: 231 IRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNA 290
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
++DMY +CG ++++ K+F M K++VSWN M++ Y
Sbjct: 291 VVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGY 326
>gi|147765658|emb|CAN78103.1| hypothetical protein VITISV_043511 [Vitis vinifera]
Length = 1849
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/404 (24%), Positives = 190/404 (47%), Gaps = 82/404 (20%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC----------------------NWTSMMGM 39
+ G VH+++I G+E G+ L+ ++ +W +++
Sbjct: 1090 DAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAG 1149
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD---YRVGKDVYDYMISIKF 96
++ + EE LF+ M+ ++P++ + C+ L++ YR GK+V+ +++
Sbjct: 1150 FSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEENAGYRYGKEVHCHVLR--- 1206
Query: 97 EGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKI 156
RME+ +D V NSL+ FY + ++ + F +
Sbjct: 1207 ------------------RMELV--------EDVSVINSLMSFYLRIXQMEKAEFLFRNM 1240
Query: 157 KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKL 216
K +DLVSWNA++AGYA G + L E ++T ++P++++L VL ACA V +++
Sbjct: 1241 KSRDLVSWNAIIAGYASNGEWLKALELFSEFISLET-IKPDSVTLVSVLPACAHVHNLQV 1299
Query: 217 GKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
K IHGY++RH + C + + F +S +D++ WN+I+ AF
Sbjct: 1300 AKGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFT 1359
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF----------- 313
SG ++LL ++ ++P+++TI++++ ++ + + T S+
Sbjct: 1360 ESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHSYSIRFGLLQGDA 1419
Query: 314 ---VWNALIDMYGRCGAIQKSRKIF-VLMPHKNLVSWNVMISVY 353
+ N ++D Y +CG ++ + IF L +N+V+ N MIS Y
Sbjct: 1420 XPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGY 1463
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/349 (26%), Positives = 165/349 (47%), Gaps = 65/349 (18%)
Query: 36 MMGMYNVLGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI 94
+ G+ + E++ LF M + +P+ V C+ L++ GK V+ Y+I
Sbjct: 1044 LSGLAGFQSHEAEVMRLFRAMHMVNEAKPNSVTIAIVLPVCARLRE-DAGKSVHSYVIKS 1102
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL-KVSHCKF 153
E + L N+LI YAKC + ++ F
Sbjct: 1103 GLESHT------------------------------LAGNALISMYAKCGLVCSDAYAAF 1132
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK- 212
++I+ KD+VSWNA++AG++ F EE L M++ +QPN +++ +L CA ++
Sbjct: 1133 NRIEFKDVVSWNAVIAGFSENKFTEEAFKLFH--AMLKGPIQPNYATIASILPVCASLEE 1190
Query: 213 --GVKLGKAIHGYVLRHHIHLSTACGFVICSCS-------------VFNQLSTRDVVVWN 257
G + GK +H +VLR + L + S +F + +RD+V WN
Sbjct: 1191 NAGYRYGKEVHCHVLR-RMELVEDVSVINSLMSFYLRIXQMEKAEFLFRNMKSRDLVSWN 1249
Query: 258 SIISAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVLPACLKLAALP----------- 305
+II+ + +G+ + AL+L + I + +KP++VT+VSVLPAC + L
Sbjct: 1250 AIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIR 1309
Query: 306 -QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
GL + V NAL+ Y +C Q + + F+++ K+L+SWN ++ +
Sbjct: 1310 HPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAF 1358
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 99/380 (26%), Positives = 165/380 (43%), Gaps = 88/380 (23%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W +++ Y G + + + LF I + ++PD V AC+ + + +V K ++ Y
Sbjct: 1247 SWNAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGY 1306
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+I + P GL E D V N+L+ FYAKC Y + +
Sbjct: 1307 II----------RHP---------------GLRE----DTSVGNALLSFYAKCNYTQAAL 1337
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F I +KDL+SWNA+L + G + NLL M ++ ++P++I++ ++ A
Sbjct: 1338 QTFLMISRKDLISWNAILDAFTESGCETHLVNLLHWM--LREGIRPDSITILTIIQYYAA 1395
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTA--------------CGFVICSCSVFNQLST-RDVVV 255
V VK K H Y +R + A CG + + ++F LS R+VV
Sbjct: 1396 VSRVKKVKETHSYSIRFGLLQGDAXPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVT 1455
Query: 256 WNSIISAFVRSGQVVDA-------------------------------LDLLRDVIVANV 284
NS+IS +V S DA L L ++ +
Sbjct: 1456 CNSMISGYVTSSSHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGM 1515
Query: 285 KPNTVTIVSVLPACLKLAALPQGLGTGSFVWN----------ALIDMYGRCGAIQKSRKI 334
KP+ VTI+S+LPAC +A++ +V A IDMY +CG++ + K+
Sbjct: 1516 KPDIVTIMSILPACAHMASVHMLRQCHGYVIRACFNDVRLNGAFIDMYSKCGSVFGAYKL 1575
Query: 335 FVLMPHKNLVSWNVMISVYG 354
F+ P K+LV + M+ +
Sbjct: 1576 FLSSPQKDLVMFTAMVGGFA 1595
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/344 (25%), Positives = 155/344 (45%), Gaps = 72/344 (20%)
Query: 46 YEEIVNLFYLMI--DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
++E ++LF + G +P+ + + K+C R G ++ Y + + +
Sbjct: 950 HDEALSLFLERVRCSVGYKPNGQILAALLKSCVAXSAIRFGSVLHGYALKLGHVSCQSLC 1009
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
+ LL+L+ K G ++ + LF EMD Q+D V
Sbjct: 1010 KGLLNLYAKSGALDYCNKLFGEMD------------------------------QRDPVI 1039
Query: 164 WNAMLAGYALGGFRE---EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
WN +L+G L GF+ EV L M M+ + +PN+++++ VL CA+++ GK++
Sbjct: 1040 WNIVLSG--LAGFQSHEAEVMRLFRAMHMV-NEAKPNSVTIAIVLPVCARLR-EDAGKSV 1095
Query: 221 HGYVLRHHIHLSTACGFVICS--------CS----VFNQLSTRDVVVWNSIISAFVRSGQ 268
H YV++ + T G + S CS FN++ +DVV WN++I+ F +
Sbjct: 1096 HSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAGFSENKF 1155
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG------------------T 310
+A L ++ ++PN TI S+LP C A+L + G
Sbjct: 1156 TEEAFKLFHAMLKGPIQPNYATIASILPVC---ASLEENAGYRYGKEVHCHVLRRMELVE 1212
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V N+L+ Y R ++K+ +F M ++LVSWN +I+ Y
Sbjct: 1213 DVSVINSLMSFYLRIXQMEKAEFLFRNMKSRDLVSWNAIIAGYA 1256
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/352 (23%), Positives = 162/352 (46%), Gaps = 40/352 (11%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKV---YKACSELKDYRVGKDVY 88
+W +++ + G +VNL + M+ +G+RPD + Y A S +K K+ +
Sbjct: 1350 SWNAILDAFTESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKV---KETH 1406
Query: 89 DYMISIKF---EGNA--CVKRPLLDLFIKCGRMEITSGLFEEMDQ--DFLVNNSLIDFYA 141
Y SI+F +G+A + +LD + KCG M+ +F + + + + NS+I Y
Sbjct: 1407 SY--SIRFGLLQGDAXPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYV 1464
Query: 142 KCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISL 201
++ F+ + + DL +WN M+ YA F ++ +L E++ M+P+ +++
Sbjct: 1465 TSSSHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQ--GQGMKPDIVTI 1522
Query: 202 SGVLAACAQVKGVKLGKAIHGYVLRH----------HIHLSTACGFVICSCSVFNQLSTR 251
+L ACA + V + + HGYV+R I + + CG V + +F +
Sbjct: 1523 MSILPACAHMASVHMLRQCHGYVIRACFNDVRLNGAFIDMYSKCGSVFGAYKLFLSSPQK 1582
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTG 311
D+V++ +++ F G +AL + ++ VKP+ V I +VL AC + +G
Sbjct: 1583 DLVMFTAMVGGFAMHGMGEEALRIFSYMLELGVKPDHVIITAVLFACSHAGLVDEGWKIF 1642
Query: 312 SFV------------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ + + ++D+ R G I+ + MP N W ++
Sbjct: 1643 NSIEKVHGFQPTMEQYACVVDLLARGGRIKDAYTFVTRMPIEANANIWGTLL 1694
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 105/398 (26%), Positives = 178/398 (44%), Gaps = 53/398 (13%)
Query: 6 QVHAHLIVCGVELCAF---------------LGSQLLEVFCN--------WTSMMGMYNV 42
QVHAH+I G+ C++ +GS L VF WT+M+ Y +
Sbjct: 60 QVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYAL 119
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIK-FEGNAC 101
G E N + M GV P F ++KAC + +GK V+ I I F +
Sbjct: 120 QGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLY 179
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
V ++DL++KCG + +F+EM ++D + LI YAK ++ + F + KD
Sbjct: 180 VGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKD 239
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+V+W AM+ GYA G +E +M+ + M+ + ++L+GV++ACAQ+ VK I
Sbjct: 240 MVAWTAMVTGYAQNGRPKEALEYFQKMQDV--GMETDEVTLAGVISACAQLGAVKHANWI 297
Query: 221 HGYVLRHH-------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
R I + + CG + VF + R+V ++S+I + G
Sbjct: 298 RDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHG 357
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GLGTGSFVW 315
+ AL L D++ ++PN VT + +L AC + Q G+ +
Sbjct: 358 RAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHY 417
Query: 316 NALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
++D+ GR G ++++ + MP N W ++
Sbjct: 418 ACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGA 455
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 110/257 (42%), Gaps = 58/257 (22%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ + W AM+ GYAL G E TN M + + P + + S + AC
Sbjct: 99 FGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMR--RDGVGPVSFTFSALFKACGAAL 156
Query: 213 GVKLGKAIHG------------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ LGK +H YV I L CGF+ C+ VF+++S RDVV W +I
Sbjct: 157 NMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELI 216
Query: 261 SAFVRSGQVVDALDLLRDVIVA--------------NVKP-----------------NTV 289
A+ + G + A L D+ + N +P + V
Sbjct: 217 VAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEV 276
Query: 290 TIVSVLPACLKLAALPQ-----------GLGTGS--FVWNALIDMYGRCGAIQKSRKIFV 336
T+ V+ AC +L A+ G G V +ALIDMY +CG+ ++ K+F
Sbjct: 277 TLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFE 336
Query: 337 LMPHKNLVSWNVMISVY 353
+M +N+ S++ MI Y
Sbjct: 337 VMKERNVFSYSSMILGY 353
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 94/219 (42%), Gaps = 42/219 (19%)
Query: 175 GFREEVTNL--LDEMEMIQTDMQPNTIS--------------LSGVLAAC---AQVKGV- 214
GF ++ + L ++ +QT PN I L +L C +Q+K V
Sbjct: 3 GFSRNLSTVSKLSHLQNLQTRGSPNFIPFPQLQHQRKLLEWRLMSILHDCTLFSQIKQVH 62
Query: 215 ----KLGKAIHGYVLRHHIHLSTACGFVICSCS--VFNQLSTRDVVVWNSIISAFVRSGQ 268
+ G + YVL I + T + S VF Q++ + +W ++I + G
Sbjct: 63 AHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYALQGL 122
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGT---------GSF-----V 314
+ ++ + + V P + T ++ AC AAL LG G F V
Sbjct: 123 LSESTNFYTRMRRDGVGPVSFTFSALFKACG--AALNMDLGKQVHAQTILIGGFASDLYV 180
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
N++ID+Y +CG + +RK+F M +++VSW +I Y
Sbjct: 181 GNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAY 219
>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 878
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/363 (25%), Positives = 162/363 (44%), Gaps = 70/363 (19%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M+ + G E V + Y M+ GVRPD ACS L+ +G++++ +
Sbjct: 249 TWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVV 308
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ ++ + V ++L+D YA + +
Sbjct: 309 LKDA-----------------------------DLAANSFVASALVDMYAGNEKVASARR 339
Query: 152 KFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + + + L WNAM+ GYA G EE L ME + P+ ++SGVL ACA
Sbjct: 340 VFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRME-AEAGCAPSETTMSGVLPACA 398
Query: 210 QVKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ +G +A+HGYV++ + + G + + +F + RDVV WN+
Sbjct: 399 RSEGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNT 458
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVK----------------PNTVTIVSVLPACLKLA 302
+I+ V G +A L+ ++ + + PN +T++++LP C LA
Sbjct: 459 LITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALA 518
Query: 303 ALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
A +G L + V +AL+DMY +CG + SR +F +P +N+++WNV+I
Sbjct: 519 APARGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIM 578
Query: 352 VYG 354
YG
Sbjct: 579 AYG 581
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/361 (24%), Positives = 145/361 (40%), Gaps = 71/361 (19%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M+ Y G EE + LF M + G P V AC+ + + + ++ Y+
Sbjct: 354 WNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYV 413
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ GN V N+L+D YA+ + V+
Sbjct: 414 VKRGMAGNR------------------------------FVQNALMDMYARLGEMDVARR 443
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ--------------PN 197
F+ I +D+VSWN ++ G + G E L+ EM++ PN
Sbjct: 444 IFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPN 503
Query: 198 TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFN 246
I+L +L CA + GK IHGY +RH + A CG + S +VF+
Sbjct: 504 NITLMTLLPGCAALAAPARGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFD 563
Query: 247 QLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV-ANVKPNTVTIVSVLPACLKLAALP 305
+L R+V+ WN +I A+ G +A+ L ++ PN VT ++ L AC +
Sbjct: 564 RLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVD 623
Query: 306 QGL------------GTGSFVWNALIDMYGRCGAIQKSRKIFVLM-PHKNLVS-WNVMIS 351
+GL + ++D+ GR G + ++ I M P + VS W+ ++
Sbjct: 624 RGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLLG 683
Query: 352 V 352
Sbjct: 684 A 684
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 123/261 (47%), Gaps = 40/261 (15%)
Query: 132 VNNSLIDFYAKC--RYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
V N+L+ YA+C ++ + + +D VS+N++++ L E + L +M +
Sbjct: 102 VGNALLTAYARCGDLDAALALFAATATELRDAVSYNSLISALCLFRQWERALDALRDM-L 160
Query: 190 IQTDMQPNTISLSGVLAACAQVKG---VKLGKAIHGYVLRHH--------------IHLS 232
+ ++ +L VL AC+ + G +LG+ H + L+ + +
Sbjct: 161 AEGRHDVSSFTLVSVLLACSHLPGDDGRRLGREAHAFALKRGFLDEGRERFPFNALLSMY 220
Query: 233 TACGFVICSCSVFNQLSTR------DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286
G V + S+F + DVV WN++IS V+ G+ +A+++L D++ V+P
Sbjct: 221 ARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRP 280
Query: 287 NTVTIVSVLPACLKLAALPQG------------LGTGSFVWNALIDMYGRCGAIQKSRKI 334
+ VT S LPAC +L L G L SFV +AL+DMY + +R++
Sbjct: 281 DGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRV 340
Query: 335 FVLMPH--KNLVSWNVMISVY 353
F ++P + L WN MI Y
Sbjct: 341 FDMVPEPSRQLGMWNAMICGY 361
>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
Length = 804
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/376 (24%), Positives = 165/376 (43%), Gaps = 58/376 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT M+ N G + E + M G P F V +C+ + VG+ V+ ++
Sbjct: 131 SWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFV 190
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSH 150
+ + V +L+++ KCG E S +FE M + + N+++ + ++
Sbjct: 191 VKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAE 250
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + + +VSWNAM+AGY G + L M + ++ M P+ +++ VL+ACA
Sbjct: 251 SLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRM-LHESSMAPDEFTITSVLSACAN 309
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVICSC---------------------------- 242
+ V++GK +H Y+LR + ++ + S
Sbjct: 310 LGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFT 369
Query: 243 ----------------SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286
+F ++ RDVV W ++I + ++G+ +A+DL R +I +P
Sbjct: 370 ALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEP 429
Query: 287 NTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIF 335
N+ T+ +VL C LA L G L S V NA+I MY R G+ +R++F
Sbjct: 430 NSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMF 489
Query: 336 -VLMPHKNLVSWNVMI 350
+ K ++W MI
Sbjct: 490 DQVCWRKETITWTSMI 505
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 165/350 (47%), Gaps = 31/350 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W +M+ YN G + + LF M+ + + PD F V AC+ L + R+GK V+ Y
Sbjct: 263 SWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAY 322
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFE---EMDQDFLVNNSLIDFYAKCRYLK 147
++ + N+ V L+ + K G +E + + E D + + +L++ Y K ++
Sbjct: 323 ILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDME 382
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
+ F + +D+V+W AM+ GY G +E +L MI +PN+ +L+ VL+
Sbjct: 383 SAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLF--RSMITCGPEPNSYTLAAVLSV 440
Query: 208 CAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSC-----------SVFNQLSTR-DVVV 255
CA + + GK IH +R + S++ I + +F+Q+ R + +
Sbjct: 441 CASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETIT 500
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW 315
W S+I A + GQ +A+ L +++ A V+P+ +T V VL AC + +G +
Sbjct: 501 WTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIK 560
Query: 316 NA------------LIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
N ++D+ R G ++++ MP + ++W ++S
Sbjct: 561 NEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSA 610
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/354 (22%), Positives = 149/354 (42%), Gaps = 69/354 (19%)
Query: 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIK----CGRMEIT 119
DH+ ++ + C + G+ ++ + +A + LL + + G +
Sbjct: 27 DHYA--RLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDA 84
Query: 120 SGLFEEMD---QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGG- 175
LF+E+ ++ NSL+ +AK L + F+++ ++D VSW M+ G G
Sbjct: 85 RRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGR 144
Query: 176 FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR--------- 226
F E + LLD M P +L+ VL++CA + +G+ +H +V++
Sbjct: 145 FGEAIKTLLD---MTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPV 201
Query: 227 ---------------------------------HHIHLSTACGFVICSCSVFNQLSTRDV 253
+ L+T G + + S+F + R +
Sbjct: 202 ANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSI 261
Query: 254 VVWNSIISAFVRSGQVVDALDLL-RDVIVANVKPNTVTIVSVLPACLKLAALPQG----- 307
V WN++I+ + ++G AL L R + +++ P+ TI SVL AC L + G
Sbjct: 262 VSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHA 321
Query: 308 ------LGTGSFVWNALIDMYGRCGAIQKSRKIF--VLMPHKNLVSWNVMISVY 353
+ S V NALI Y + G+++ +R+I + N++S+ ++ Y
Sbjct: 322 YILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGY 375
>gi|356533546|ref|XP_003535324.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Glycine max]
Length = 483
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/328 (26%), Positives = 168/328 (51%), Gaps = 28/328 (8%)
Query: 51 NLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLF 110
+ F LM + + PD + ++K+ S L+ Y +G V+ +++ + F +A V+ L+++
Sbjct: 92 SFFSLMKTRAISPDEYTLAPLFKSASNLRYYVLGGCVHAHVVRLGFTRHASVRVAALEVY 151
Query: 111 IKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLA 169
C RM S +F+EM D D +V N +I + K L+ F ++K++ +VSWN M++
Sbjct: 152 ASCERMGDASKVFDEMRDPDVVVWNLMIRGFCKMGDLETGMKVFGQMKERTVVSWNLMMS 211
Query: 170 GYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----- 224
A E+ L +EM ++ +P+ SL VL CA++ V +G+ IH Y
Sbjct: 212 CLAKNNKEEKALELFNEM--LEQGFEPDDASLVTVLPVCARLGAVDIGEWIHSYANSKGF 269
Query: 225 LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLR 277
L+ I++ + CG + + S+FN +++++VV WN++IS +G+ ++L
Sbjct: 270 LQDTINVGNSLVDFYCKCGNLQAAWSIFNDMASKNVVSWNAMISGLAYNGEGEVGVNLFE 329
Query: 278 DVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNALIDMYGRC 325
+++ +PN T V VL C + + +G + + + ++D+ GRC
Sbjct: 330 EMVHGGFEPNDSTFVGVLACCAHVGLVDRGRDLFASMSVKFKVSPKLEHYGCVVDLLGRC 389
Query: 326 GAIQKSRKIFVLMPHKNLVS-WNVMISV 352
G ++++R + MP K + W ++S
Sbjct: 390 GHVREARDLITSMPLKPTAALWGALLSA 417
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 109/267 (40%), Gaps = 53/267 (19%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W MM E+ + LF M+++G PD V C+ L +G+ ++ Y
Sbjct: 205 SWNLMMSCLAKNNKEEKALELFNEMLEQGFEPDDASLVTVLPVCARLGAVDIGEWIHSYA 264
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
S F + V NSL+DFY KC L+ +
Sbjct: 265 NSKGF-----------------------------LQDTINVGNSLVDFYCKCGNLQAAWS 295
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ + K++VSWNAM++G A G E NL + EM+ +PN + GVLA CA V
Sbjct: 296 IFNDMASKNVVSWNAMISGLAYNGEGEVGVNLFE--EMVHGGFEPNDSTFVGVLACCAHV 353
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V G+ + S SV ++S + + + ++ R G V +
Sbjct: 354 GLVDRGRDL------------------FASMSVKFKVSPK-LEHYGCVVDLLGRCGHVRE 394
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPAC 298
A DL+ + +KP ++L AC
Sbjct: 395 ARDLITSM---PLKPTAALWGALLSAC 418
>gi|357441891|ref|XP_003591223.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480271|gb|AES61474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 606
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 102/350 (29%), Positives = 156/350 (44%), Gaps = 65/350 (18%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WTSM+ Y ++ N+F M+ GV+P+ F V KAC LK GK V+ I
Sbjct: 75 WTSMITGYTSCNHHSRAWNVFTNMLRDGVKPNAFTVSAVLKACKSLKALLCGKLVHGLAI 134
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKC-RYLKVSHC 151
I +G++ V+N+L+D YA C + +
Sbjct: 135 KIGTQGSS-----------------------------IYVDNALMDMYATCCDSMDNARL 165
Query: 152 KFSKIKQKDLVSWNAMLAGY-----ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
F I K+ VSW ++ GY A GG R + +M M + ++ P S S ++
Sbjct: 166 VFEDIGTKNAVSWTTLITGYTHRRDAFGGLR-----VFRQMFMEEGELSP--FSFSIAVS 218
Query: 207 ACAQVKGVKLGKAIHGYVLRH----HIHLSTACGFVICSC-------SVFNQLSTRDVVV 255
ACA + LGK +H V+ H ++ + A + C C +F +++ +D +
Sbjct: 219 ACASIGSSNLGKQVHAAVINHGFESNLPVMNAILDMYCRCRCASEAKQLFGEMTQKDTIT 278
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL----------- 304
WN++I+ F + ++L + ++ PN T SV+ AC LA L
Sbjct: 279 WNTLIAGF-ETLDSYESLCIFSQMVSEGFSPNCFTFTSVIAACANLAILYCGQQLHGGII 337
Query: 305 PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+GL + NALIDMY +CG + S KIF M H NLVSW M+ YG
Sbjct: 338 HRGLDNNLELSNALIDMYAKCGNVADSHKIFSGMRHTNLVSWTSMMIGYG 387
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 117/238 (49%), Gaps = 26/238 (10%)
Query: 127 DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDE 186
+ + V N+++D Y +CR + F ++ QKD ++WN ++AG+ + +L
Sbjct: 242 ESNLPVMNAILDMYCRCRCASEAKQLFGEMTQKDTITWNTLIAGFET---LDSYESLCIF 298
Query: 187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA-------C 235
+M+ PN + + V+AACA + + G+ +HG + L +++ LS A C
Sbjct: 299 SQMVSEGFSPNCFTFTSVIAACANLAILYCGQQLHGGIIHRGLDNNLELSNALIDMYAKC 358
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
G V S +F+ + ++V W S++ + G +A+DL +++ + +KP+ + ++VL
Sbjct: 359 GNVADSHKIFSGMRHTNLVSWTSMMIGYGAHGHGKEAVDLFNEMVGSGIKPDKIVFMAVL 418
Query: 296 PACLKLAALPQGL------------GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK 341
AC + +GL ++ ++D+ R G ++++ ++ MP K
Sbjct: 419 SACSHAGLVDEGLRYFRLMTSYYNVAPDRDIYACVVDLLSRAGRVKEAYELIENMPFK 476
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 110/246 (44%), Gaps = 26/246 (10%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
+ LI Y + +H F ++ +D+++W +M+ GY N+ M++
Sbjct: 43 LTTDLIKSYFDKGSFEEAHTLFDEMPHRDVIAWTSMITGYTSCNHHSRAWNVF--TNMLR 100
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-----HHIHLSTACGFVICSCS--- 243
++PN ++S VL AC +K + GK +HG ++ I++ A + +C
Sbjct: 101 DGVKPNAFTVSAVLKACKSLKALLCGKLVHGLAIKIGTQGSSIYVDNALMDMYATCCDSM 160
Query: 244 -----VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
VF + T++ V W ++I+ + L + R + + + + + + AC
Sbjct: 161 DNARLVFEDIGTKNAVSWTTLITGYTHRRDAFGGLRVFRQMFMEEGELSPFSFSIAVSAC 220
Query: 299 LKL-----------AALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
+ A + G + V NA++DMY RC +++++F M K+ ++WN
Sbjct: 221 ASIGSSNLGKQVHAAVINHGFESNLPVMNAILDMYCRCRCASEAKQLFGEMTQKDTITWN 280
Query: 348 VMISVY 353
+I+ +
Sbjct: 281 TLIAGF 286
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 136/319 (42%), Gaps = 76/319 (23%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYN 41
LG QVHA +I G E + + +L+++C W +++ +
Sbjct: 228 LGKQVHAAVINHGFESNLPVMNAILDMYCRCRCASEAKQLFGEMTQKDTITWNTLIAGFE 287
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
L YE + +F M+ +G P+ F V AC+ L
Sbjct: 288 TLDSYESLC-IFSQMVSEGFSPNCFTFTSVIAACANLA---------------------- 324
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ CG+ + +D + ++N+LID YAKC + SH FS ++ +L
Sbjct: 325 --------ILYCGQQLHGGIIHRGLDNNLELSNALIDMYAKCGNVADSHKIFSGMRHTNL 376
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSW +M+ GY G +E +L + EM+ + ++P+ I VL+AC+ V G
Sbjct: 377 VSWTSMMIGYGAHGHGKEAVDLFN--EMVGSGIKPDKIVFMAVLSACSHAGLVDEG---- 430
Query: 222 GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281
LR+ ++ S +N RD ++ ++ R+G+V +A +L+ ++
Sbjct: 431 ---LRYFRLMT----------SYYNVAPDRD--IYACVVDLLSRAGRVKEAYELIENM-- 473
Query: 282 ANVKPNTVTIVSVLPACLK 300
KP+ V++L AC K
Sbjct: 474 -PFKPDESIWVALLGACKK 491
>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 786
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/389 (23%), Positives = 181/389 (46%), Gaps = 58/389 (14%)
Query: 19 CAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL 78
C F +WT+M+ Y +G Y + + + M+ +G+ P F V + +
Sbjct: 100 CEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAAT 159
Query: 79 KDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLI 137
+ GK V+ +++ + GN V LL+++ KCG + +F+ M +D N++I
Sbjct: 160 RCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMI 219
Query: 138 DFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN 197
+ + + ++ +F ++ ++D+V+WN+M++GY G+ ++ +M + + + P+
Sbjct: 220 ALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKM-LRDSMLSPD 278
Query: 198 TISLSGVLAACAQVKGVKLGKAIH-----------GYVLRHHIHLSTACGFVIC------ 240
+L+ VL+ACA ++ + +G+ IH G VL I + + CG V
Sbjct: 279 RFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIE 338
Query: 241 ---------------------------SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
+ ++F+ L RDVV W ++I + + G +A+
Sbjct: 339 QRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAI 398
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGSF----VWNALIDMY 322
+L R ++ +PN+ T+ ++L LA+L G + +G V NALI MY
Sbjct: 399 NLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMY 458
Query: 323 GRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ G+I + + F L+ ++ VSW MI
Sbjct: 459 AKAGSITSASRAFDLIRCERDTVSWTSMI 487
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/373 (24%), Positives = 179/373 (47%), Gaps = 32/373 (8%)
Query: 10 HLIVCGVELCAFLGSQLLEV-FCNWTSMMGMYNVLGYYEEIVNLFYLMI-DKGVRPDHFV 67
H+ V ++L Q+ E W SM+ YN GY +++F M+ D + PD F
Sbjct: 222 HMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFT 281
Query: 68 CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM- 126
V AC+ L+ +G+ ++ ++++ F+ + V L+ ++ +CG +E L E+
Sbjct: 282 LASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRG 341
Query: 127 DQDFLVN--NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLL 184
+D + +L+D Y K + + F +K +D+V+W AM+ GY G E NL
Sbjct: 342 TKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLF 401
Query: 185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTA------ 234
M+ + +PN+ +L+ +L+ + + + GK IHG ++ + + +S A
Sbjct: 402 --RSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYA 459
Query: 235 -CGFVICSCSVFNQLS-TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
G + + F+ + RD V W S+I A + G +AL+L +++ ++P+ +T V
Sbjct: 460 KAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYV 519
Query: 293 SVLPACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFVLMP- 339
V AC + QG + + ++D++GR G +Q++++ MP
Sbjct: 520 GVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPI 579
Query: 340 HKNLVSWNVMISV 352
++V+W ++S
Sbjct: 580 EPDVVTWGSLLSA 592
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 136/296 (45%), Gaps = 63/296 (21%)
Query: 106 LLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
L++++ K G LF+EM + N+++ YAK + S F ++ Q+D VSW
Sbjct: 55 LMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSW 114
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
M+ GY G + ++ EM++ ++P+ +L+ VLA+ A + ++ GK +H ++
Sbjct: 115 TTMIVGYKNIGQYHKAIRIMG--EMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFI 172
Query: 225 ----LRHHIHLSTA-------CGFVICSCSVFN--------------------------- 246
LR ++ +S + CG + + VF+
Sbjct: 173 VKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAM 232
Query: 247 ----QLSTRDVVVWNSIISAFVRSGQVVDALD----LLRDVIVANVKPNTVTIVSVLPAC 298
Q++ RD+V WNS+IS + + G + ALD +LRD +++ P+ T+ SVL AC
Sbjct: 233 AQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLS---PDRFTLASVLSAC 289
Query: 299 LKLAAL-----------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
L L G V NALI MY RCG ++ +R++ K+L
Sbjct: 290 ANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDL 345
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 23/162 (14%)
Query: 215 KLGKAIHGYVLRHHIHLSTAC------------GFVICSCSVFNQLSTRDVVVWNSIISA 262
K G A+H L + L TA G + SC F++L RD V W ++I
Sbjct: 61 KTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVG 120
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF--------- 313
+ GQ A+ ++ +++ ++P+ T+ +VL + L G SF
Sbjct: 121 YKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGN 180
Query: 314 --VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V N+L++MY +CG ++ +F M K++ SWN MI+++
Sbjct: 181 VSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALH 222
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 14/167 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ G+ EE + LF M+ +G+RPDH V+ AC+ G+ +D M
Sbjct: 482 SWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMM 541
Query: 92 ISIK-----FEGNACVKRPLLDLFIKCGRMEITSGLFEEM--DQDFLVNNSLID---FYA 141
+ AC ++DLF + G ++ E+M + D + SL+ Y
Sbjct: 542 KDVDKIIPTLSHYAC----MVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYK 597
Query: 142 KCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
KV+ + ++ ++ +++A+ Y+ G EE + M+
Sbjct: 598 NIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMK 644
>gi|296084064|emb|CBI24452.3| unnamed protein product [Vitis vinifera]
Length = 503
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/381 (24%), Positives = 170/381 (44%), Gaps = 77/381 (20%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCN-----------------------WTSMMGMYNV 42
+HA +I+ G E FLG++L+ + W +++ Y
Sbjct: 25 SIHAQIIIGGFEENPFLGAKLVGKYAQCYESNIEDARKVFDCLPDRDVFVWNTIIQGYAN 84
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
LG + E +N++ M GV + + P V KAC +KD + G+ ++ +++
Sbjct: 85 LGPFMEALNIYEYMRCSGVAANRYTFPFVLKACGAMKDGKKGQAIHGHVVK--------- 135
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+D D V N+L+ FYAKC + S F I +KD+V
Sbjct: 136 ---------------------HGLDLDLFVGNALVAFYAKCNEIGASRRVFDMISEKDIV 174
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDM--QPNTISLSGVLAACAQVKGVKLGKAI 220
+WN+M++GYA+ G ++ L M +Q D P++ +L +L ACAQ ++ G I
Sbjct: 175 TWNSMISGYAINGCADDALVLFHNMLQVQGDTVYAPDSATLVAILPACAQAAAIQEGLWI 234
Query: 221 HGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H YV++ I L A CG + + VF+++ +++VVWN+II + G
Sbjct: 235 HSYVIKSGIELDAALGSGLIAMYANCGLLNSARDVFDRIDDKNIVVWNAIIRCYGMHGHA 294
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL-----------GTGSFVWNAL 318
+AL + +I + + P+ V + +L A + +G+ S + ++
Sbjct: 295 DEALKMFSGLIDSGLHPDGVIFLCLLSAFSHAGMVAEGMELFEKMGDYGVEKSSEHYASV 354
Query: 319 IDMYGRCGAIQKSRKIFVLMP 339
+D+ GR G + ++ + MP
Sbjct: 355 VDILGRAGFLHEAVEFVKNMP 375
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 133/272 (48%), Gaps = 33/272 (12%)
Query: 111 IKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK--FSKIKQKDLVSWNAML 168
IK +I G FEE + + L+ YA+C + + F + +D+ WN ++
Sbjct: 23 IKSIHAQIIIGGFEE---NPFLGAKLVGKYAQCYESNIEDARKVFDCLPDRDVFVWNTII 79
Query: 169 AGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH 228
GYA G E N+ + M + + N + VL AC +K K G+AIHG+V++H
Sbjct: 80 QGYANLGPFMEALNIYEYMRC--SGVAANRYTFPFVLKACGAMKDGKKGQAIHGHVVKHG 137
Query: 229 IHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLR 277
+ L C + S VF+ +S +D+V WNS+IS + +G DAL L
Sbjct: 138 LDLDLFVGNALVAFYAKCNEIGASRRVFDMISEKDIVTWNSMISGYAINGCADDALVLFH 197
Query: 278 DVIVAN----VKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNALIDMY 322
+++ P++ T+V++LPAC + AA+ +GL S+V + LI MY
Sbjct: 198 NMLQVQGDTVYAPDSATLVAILPACAQAAAIQEGLWIHSYVIKSGIELDAALGSGLIAMY 257
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
CG + +R +F + KN+V WN +I YG
Sbjct: 258 ANCGLLNSARDVFDRIDDKNIVVWNAIIRCYG 289
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 83/183 (45%), Gaps = 27/183 (14%)
Query: 195 QPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACG------FVICSCS----- 243
Q N+ + +L C KG K K+IH ++ + G + C S
Sbjct: 4 QRNSYDYTYLLQRC---KGTKTIKSIHAQIIIGGFEENPFLGAKLVGKYAQCYESNIEDA 60
Query: 244 --VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
VF+ L RDV VWN+II + G ++AL++ + + V N T VL AC +
Sbjct: 61 RKVFDCLPDRDVFVWNTIIQGYANLGPFMEALNIYEYMRCSGVAANRYTFPFVLKACGAM 120
Query: 302 A-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ GL FV NAL+ Y +C I SR++F ++ K++V+WN MI
Sbjct: 121 KDGKKGQAIHGHVVKHGLDLDLFVGNALVAFYAKCNEIGASRRVFDMISEKDIVTWNSMI 180
Query: 351 SVY 353
S Y
Sbjct: 181 SGY 183
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 95/239 (39%), Gaps = 57/239 (23%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF--CN-------------------WTSMMGMYNV 42
G +H H++ G++L F+G+ L+ + CN W SM+ Y +
Sbjct: 126 GQAIHGHVVKHGLDLDLFVGNALVAFYAKCNEIGASRRVFDMISEKDIVTWNSMISGYAI 185
Query: 43 LGYYEEIVNLFYLMI----DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
G ++ + LF+ M+ D PD + AC++ + G ++ Y+I E
Sbjct: 186 NGCADDALVLFHNMLQVQGDTVYAPDSATLVAILPACAQAAAIQEGLWIHSYVIKSGIEL 245
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
+A + L+ ++ CG + NS D F +I
Sbjct: 246 DAALGSGLIAMYANCGLL-----------------NSARDV-------------FDRIDD 275
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
K++V WNA++ Y + G +E + +I + + P+ + +L+A + V G
Sbjct: 276 KNIVVWNAIIRCYGMHGHADEALKMFS--GLIDSGLHPDGVIFLCLLSAFSHAGMVAEG 332
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 23/91 (25%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
++ G+ +H+++I G+EL A LGS L+ ++ N W +++
Sbjct: 228 IQEGLWIHSYVIKSGIELDAALGSGLIAMYANCGLLNSARDVFDRIDDKNIVVWNAIIRC 287
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDH--FVC 68
Y + G+ +E + +F +ID G+ PD F+C
Sbjct: 288 YGMHGHADEALKMFSGLIDSGLHPDGVIFLC 318
>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Glycine max]
Length = 747
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/347 (26%), Positives = 176/347 (50%), Gaps = 26/347 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W S++ Y G+ + V + LM+ G + + S+ +G V+ +
Sbjct: 108 SWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGH 167
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVS 149
++ F+ V PL+D++ K G + F+EM +++ ++ N+LI +C ++ S
Sbjct: 168 VVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDS 227
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F +++KD +SW AM+AG+ G E +L EM + +M T VL AC
Sbjct: 228 RQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYT--FGSVLTACG 285
Query: 210 QVKGVKLGKAIHGYVLR----HHIHLSTACGFVICSC-------SVFNQLSTRDVVVWNS 258
V ++ GK +H Y++R +I + +A + C C +VF +++ ++VV W +
Sbjct: 286 GVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTA 345
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL---------G 309
++ + ++G +A+ + D+ ++P+ T+ SV+ +C LA+L +G G
Sbjct: 346 MLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSG 405
Query: 310 TGSF--VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
SF V NAL+ +YG+CG+I+ S ++F M + + VSW ++S Y
Sbjct: 406 LISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYA 452
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/427 (21%), Positives = 172/427 (40%), Gaps = 108/427 (25%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLE-------VFC---------------------- 31
+ LG+QVH H++ G + F+GS L++ VFC
Sbjct: 158 VHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAG 217
Query: 32 -----------------------NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVC 68
+WT+M+ + G E ++LF M + + D +
Sbjct: 218 LMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTF 277
Query: 69 PKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ 128
V AC + + GK V+ Y+I ++ N V L+D++ K
Sbjct: 278 GSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCK---------------- 321
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
C+ +K + F K+ K++VSW AML GY G+ EE + +M+
Sbjct: 322 --------------CKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQ 367
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL-----------RHHIHLSTACGF 237
++P+ +L V+++CA + ++ G H L + L CG
Sbjct: 368 --NNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGS 425
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ S +F+++S D V W +++S + + G+ + L L ++ KP+ VT + VL A
Sbjct: 426 IEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSA 485
Query: 298 CLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLV 344
C + + +G + + +ID++ R G ++++RK MP + +
Sbjct: 486 CSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAI 545
Query: 345 SWNVMIS 351
W ++S
Sbjct: 546 GWASLLS 552
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 152/334 (45%), Gaps = 55/334 (16%)
Query: 75 CSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN- 133
C LK R K ++ ++I + L+ + K R+ +F++M Q L +
Sbjct: 19 CELLKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSW 78
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
N+L+ Y+K L F + +D+VSWN++++ YA GF + + M +
Sbjct: 79 NTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLM-LYNGP 137
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSC 242
N I+LS +L ++ V LG +HG+V++ + + + G V C+
Sbjct: 138 FNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCAR 197
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVD------------------------------- 271
F+++ ++VV++N++I+ +R ++ D
Sbjct: 198 QAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDRE 257
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNALID 320
A+DL R++ + N++ + T SVL AC + AL +G + FV +AL+D
Sbjct: 258 AIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVD 317
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
MY +C +I+ + +F M KN+VSW M+ YG
Sbjct: 318 MYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYG 351
>gi|255553251|ref|XP_002517668.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543300|gb|EEF44832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 512
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/339 (25%), Positives = 162/339 (47%), Gaps = 35/339 (10%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
E G ++H H++ G+ F+ + L+ ++ W +M+ Y
Sbjct: 105 EYGKELHCHVVKYGLGSNVFVQNALINMYSLCGLTDMARGIFDMSYKTDVVTWNAMISAY 164
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
N + Y++ LF+ M K V P V ACS+LKD G+ V+ Y+ + N
Sbjct: 165 NRIKQYDKTKTLFHEMEKKRVLPSSVTLVSVLSACSKLKDLESGQKVHKYISDHVVQSNL 224
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V+ L+D++ CG M + G+FE M +D + +++ +A L ++ F ++ ++
Sbjct: 225 IVENALIDMYAACGEMSVALGIFESMKSRDVISWTAIVTGFANIGQLDIARKYFDQMPER 284
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D VSW AM+ GY +E L EM+ ++++P+ ++ +L ACAQ+ ++LG+
Sbjct: 285 DYVSWTAMIDGYLQVNCFKEALVLFHEMQT--SNVKPDEFTMVSILTACAQLGALELGEW 342
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+ Y+ ++ I + CG V + S+FN + D W ++I +G
Sbjct: 343 VRTYIDKNKVKNDAYVGNALIDMYFKCGNVEKARSIFNSMPRPDKFTWTAMIVGLAINGY 402
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
+ALD+ ++ A+V P+ +T V VL AC + +G
Sbjct: 403 GEEALDMFVQMLKASVTPDEITYVGVLCACTHTGMVDEG 441
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/372 (24%), Positives = 166/372 (44%), Gaps = 85/372 (22%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y+ + + V+++ M+ V PD + P + K + + GK+++ ++
Sbjct: 55 HWNTMLKGYSRIDSPKLGVSMYLDMLKNDVLPDCYTYPFLIKGFKKDIAFEYGKELHCHV 114
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ N V N+LI+ Y+ C ++
Sbjct: 115 VKYGLGSNV------------------------------FVQNALINMYSLCGLTDMARG 144
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + D+V+WNAM++ Y ++ L EME + + P++++L VL+AC+++
Sbjct: 145 IFDMSYKTDVVTWNAMISAYNRIKQYDKTKTLFHEME--KKRVLPSSVTLVSVLSACSKL 202
Query: 212 KGVKLGKAIHGYVLRH-----------HIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
K ++ G+ +H Y+ H I + ACG + + +F + +RDV+ W +I+
Sbjct: 203 KDLESGQKVHKYISDHVVQSNLIVENALIDMYAACGEMSVALGIFESMKSRDVISWTAIV 262
Query: 261 SAFVRSGQV-------------------------------VDALDLLRDVIVANVKPNTV 289
+ F GQ+ +AL L ++ +NVKP+
Sbjct: 263 TGFANIGQLDIARKYFDQMPERDYVSWTAMIDGYLQVNCFKEALVLFHEMQTSNVKPDEF 322
Query: 290 TIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLM 338
T+VS+L AC +L AL G + ++V NALIDMY +CG ++K+R IF M
Sbjct: 323 TMVSILTACAQLGALELGEWVRTYIDKNKVKNDAYVGNALIDMYFKCGNVEKARSIFNSM 382
Query: 339 PHKNLVSWNVMI 350
P + +W MI
Sbjct: 383 PRPDKFTWTAMI 394
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 117/249 (46%), Gaps = 28/249 (11%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCK--FSKIKQKDLVSWNAMLAGYA-LGGFREEVTNLLDEM 187
++ N + F + +++ + F I + + WN ML GY+ + + V+ LD
Sbjct: 21 IIQNKIFSFCCTQEFGDMNYARQLFDTIPEPTVFHWNTMLKGYSRIDSPKLGVSMYLD-- 78
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACG 236
M++ D+ P+ + ++ + + GK +H +V+++ I++ + CG
Sbjct: 79 -MLKNDVLPDCYTYPFLIKGFKKDIAFEYGKELHCHVVKYGLGSNVFVQNALINMYSLCG 137
Query: 237 FVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296
+ +F+ DVV WN++ISA+ R Q L ++ V P++VT+VSVL
Sbjct: 138 LTDMARGIFDMSYKTDVVTWNAMISAYNRIKQYDKTKTLFHEMEKKRVLPSSVTLVSVLS 197
Query: 297 ACLKLAALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
AC KL L G + V NALIDMY CG + + IF M ++++S
Sbjct: 198 ACSKLKDLESGQKVHKYISDHVVQSNLIVENALIDMYAACGEMSVALGIFESMKSRDVIS 257
Query: 346 WNVMISVYG 354
W +++ +
Sbjct: 258 WTAIVTGFA 266
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 32/191 (16%)
Query: 30 FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
+ +WT+M+ Y + ++E + LF+ M V+PD F + AC++L +G+ V
Sbjct: 286 YVSWTAMIDGYLQVNCFKEALVLFHEMQTSNVKPDEFTMVSILTACAQLGALELGEWVRT 345
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
Y+ K + +A V N+LID Y KC ++ +
Sbjct: 346 YIDKNKVKNDA------------------------------YVGNALIDMYFKCGNVEKA 375
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F+ + + D +W AM+ G A+ G+ EE ++ ++M++ + P+ I+ GVL AC
Sbjct: 376 RSIFNSMPRPDKFTWTAMIVGLAINGYGEEALDMF--VQMLKASVTPDEITYVGVLCACT 433
Query: 210 QVKGVKLGKAI 220
V G+ +
Sbjct: 434 HTGMVDEGRNL 444
>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 684
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 98/375 (26%), Positives = 175/375 (46%), Gaps = 91/375 (24%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT ++ + G+ ++ ++++ ++ + VRPD FV V KAC+ D V K ++D I
Sbjct: 45 WTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVAKACAASGDLVVAKKIHDDAI 104
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F ++D ++ N+LID + KC+++ + C
Sbjct: 105 QFGF------------------------------NKDLVLGNALIDMFGKCKFVNGARCV 134
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + KD+VSW +M Y G + L EM + ++ N++++S +L ACA
Sbjct: 135 FDDMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGL--NGIRANSLTVSSILPACADY- 191
Query: 213 GVKLGKAIHGYVLRH----HIHLSTACGFVICSC-------SVFNQLSTRDVVVWNSIIS 261
+KLG+ +HG++LR+ ++++S+A + S VF+ + RD+V WN +++
Sbjct: 192 -IKLGREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLT 250
Query: 262 AF-----------------------------------VRSGQVVDALDLLRDVIVANVKP 286
A+ +++GQ AL +L + + +KP
Sbjct: 251 AYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKP 310
Query: 287 NTVTIVSVLPACLKLAALPQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIF 335
N +TIVS LP C L +L G +V+ AL+ +Y +CG ++ SR +F
Sbjct: 311 NRITIVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVF 370
Query: 336 VLMPHKNLVSWNVMI 350
MP K++V+WN MI
Sbjct: 371 NTMPRKDVVAWNTMI 385
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/337 (24%), Positives = 162/337 (48%), Gaps = 34/337 (10%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY-RVGKDVYDY 90
+WTSM Y G + + LF M G+R + + AC+ DY ++G++V+ +
Sbjct: 145 SWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACA---DYIKLGREVHGF 201
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVS 149
++ + EGN V L++++ ++ +F+ M +D + N ++ Y + +
Sbjct: 202 ILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERG 261
Query: 150 HCKFSKIKQKDL----VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
F +++++ + SWNA ++G G E +L +M+ + ++PN I++ L
Sbjct: 262 LGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQ--DSGIKPNRITIVSAL 319
Query: 206 AACAQVKGVKLGKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVV 254
C ++ ++ GK IHGYV RH + ++TA CG + S VFN + +DVV
Sbjct: 320 PGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPRKDVV 379
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL------ 308
WN++I A G+ ++L L ++ + V+PN+VT + VL C +GL
Sbjct: 380 AWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADEGLLVFNSM 439
Query: 309 ------GTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+ ++ ++D+ R G ++++ MP
Sbjct: 440 SSEHSITPDADHYSCMVDVLSRAGRLEEAYDFIRKMP 476
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 112/221 (50%), Gaps = 22/221 (9%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F KI + DL +W +++G+ GF ++ ++ + + +++P+ L V ACA
Sbjct: 34 FDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTL--LSRNVRPDKFVLLSVAKACAASG 91
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ + K IH ++ I + C FV + VF+ + +DVV W S+
Sbjct: 92 DLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVVSWTSMTY 151
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC---LKLAALPQG------LGTGS 312
+V G + L R++ + ++ N++T+ S+LPAC +KL G +
Sbjct: 152 CYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACADYIKLGREVHGFILRNEMEGNV 211
Query: 313 FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+V +AL++MY ++++R +F M H+++VSWNVM++ Y
Sbjct: 212 YVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAY 252
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC----- 298
+F+++ D+ W +IS + G A+D+ ++ NV+P+ ++SV AC
Sbjct: 33 LFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVAKACAASGD 92
Query: 299 ------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+ A+ G + NALIDM+G+C + +R +F M K++VSW M
Sbjct: 93 LVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVVSWTSMTYC 152
Query: 353 Y 353
Y
Sbjct: 153 Y 153
>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 808
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 101/391 (25%), Positives = 181/391 (46%), Gaps = 71/391 (18%)
Query: 7 VHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNVLGY 45
VH H G+ F+ + L++V+ W +M+ Y + G
Sbjct: 151 VHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVVAWNAMLAGYALHGK 210
Query: 46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP 105
Y + + LM D P+ + ++ G+ V+ Y + AC
Sbjct: 211 YSDTIACLLLMQDDHA-PNASTLVALLPLLAQHGALSQGRAVHAYSV------RAC---- 259
Query: 106 LLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWN 165
L + D LV +L+D YAKC +L + F + ++ V+W+
Sbjct: 260 ---------------SLHDHKD-GVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWS 303
Query: 166 AMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL 225
A++ G+ L G E +L +M + Q + S++ L ACA + + LGK +H +
Sbjct: 304 ALVGGFVLCGRMLEAFSLFKDM-LAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLA 362
Query: 226 RHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALD 274
+ +H + G + + ++F+Q+ +D V +++++S +V++G+ +A
Sbjct: 363 KSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFR 422
Query: 275 LLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYG 323
+ R + NV+P+ T+VS++PAC LAAL +G+ + + + NALIDMY
Sbjct: 423 VFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYA 482
Query: 324 RCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+CG I SR+IF +MP +++VSWN MI+ YG
Sbjct: 483 KCGRIDLSRQIFDVMPARDIVSWNTMIAGYG 513
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 144/322 (44%), Gaps = 66/322 (20%)
Query: 62 RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSG 121
+P+++ P V KACS L D R + V+ + + V L+D++ KC +
Sbjct: 126 QPNNYTFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAAT 185
Query: 122 LFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYAL-GGFREEV 180
+F M +D+V+WNAMLAGYAL G + + +
Sbjct: 186 VFRRM------------------------------PARDVVAWNAMLAGYALHGKYSDTI 215
Query: 181 TNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH---HIH------- 230
LL ++Q D PN +L +L AQ + G+A+H Y +R H H
Sbjct: 216 ACLL----LMQDDHAPNASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDGVLVG 271
Query: 231 -----LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN-- 283
+ CG ++ + VF ++ R+ V W++++ FV G++++A L +D++
Sbjct: 272 TALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLC 331
Query: 284 -VKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWNALIDMYGRCGAIQKS 331
+ P +V S L AC L+ L GL T N+L+ MY + G I ++
Sbjct: 332 FLSPTSVA--SALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQA 389
Query: 332 RKIFVLMPHKNLVSWNVMISVY 353
+F M K+ VS++ ++S Y
Sbjct: 390 TTLFDQMVVKDTVSYSALVSGY 411
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/347 (22%), Positives = 149/347 (42%), Gaps = 63/347 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCP----KVYKACSELKDYRVGKDV 87
W++++G + + G E +LF M+ +G+ F+ P +AC+ L D +GK +
Sbjct: 301 TWSALVGGFVLCGRMLEAFSLFKDMLAQGLC---FLSPTSVASALRACANLSDLCLGKQL 357
Query: 88 YDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147
+ L K G + D NSL+ YAK +
Sbjct: 358 HA-------------------LLAKSG-----------LHTDLTAGNSLLSMYAKAGLID 387
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
+ F ++ KD VS++A+++GY G +E + +M+ ++QP+ ++ ++ A
Sbjct: 388 QATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQ--ACNVQPDVATMVSLIPA 445
Query: 208 CAQVKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVW 256
C+ + ++ GK HG V+ I T+ CG + S +F+ + RD+V W
Sbjct: 446 CSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSW 505
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC------------LKLAAL 304
N++I+ + G +A L D+ +P+ VT + ++ AC + A
Sbjct: 506 NTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAH 565
Query: 305 PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMI 350
G+ + ++D+ R G + ++ + MP K V W ++
Sbjct: 566 KYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALL 612
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 109/234 (46%), Gaps = 29/234 (12%)
Query: 143 CRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLS 202
C L ++ F +I + +NA++ Y+L G + L + QPN +
Sbjct: 76 CGDLSLARHLFDQIPAPGIHDYNALIRAYSLRG--PALALRLYRSLRRRRLPQPNNYTFP 133
Query: 203 GVLAACAQVKGVKLGKAIHGYVLRHHIH----LSTACGFVICSC-------SVFNQLSTR 251
VL AC+ + ++ +A+H + R +H +STA V C +VF ++ R
Sbjct: 134 FVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPAR 193
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGT- 310
DVV WN++++ + G+ D + L ++ + PN T+V++LP + AL QG
Sbjct: 194 DVVAWNAMLAGYALHGKYSDTIACLL-LMQDDHAPNASTLVALLPLLAQHGALSQGRAVH 252
Query: 311 --------------GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
G V AL+DMY +CG + + ++F M +N V+W+ ++
Sbjct: 253 AYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALV 306
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 96/238 (40%), Gaps = 55/238 (23%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYN 41
LG Q+HA L G+ G+ LL ++ ++++++ Y
Sbjct: 353 LGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYV 412
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G +E +F M V+PD + ACS L + GK
Sbjct: 413 QNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGK---------------- 456
Query: 102 VKRPLLDLFIKCGRME-ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
CG I G+ E + N+LID YAKC + +S F + +D
Sbjct: 457 -----------CGHGSVIVRGIASETS----ICNALIDMYAKCGRIDLSRQIFDVMPARD 501
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+VSWN M+AGY + G +E T L ++M +P+ ++ +++AC+ V GK
Sbjct: 502 IVSWNTMIAGYGIHGLGKEATALF--LDMKHQACEPDDVTFICLISACSHSGLVTEGK 557
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 11/136 (8%)
Query: 230 HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289
H CG + + +F+Q+ + +N++I A+ G + +PN
Sbjct: 71 HNRMICGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNY 130
Query: 290 TIVSVLPACLKL-----------AALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLM 338
T VL AC L A GL FV AL+D+Y +C + + + +F M
Sbjct: 131 TFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRM 190
Query: 339 PHKNLVSWNVMISVYG 354
P +++V+WN M++ Y
Sbjct: 191 PARDVVAWNAMLAGYA 206
>gi|356557931|ref|XP_003547263.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Glycine max]
Length = 764
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 104/396 (26%), Positives = 180/396 (45%), Gaps = 78/396 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMY 40
LG+ +H ++V G+ L A++ S L+ + WTS++G Y
Sbjct: 86 SLGLSLHQRILVSGLSLDAYIASSLINFYAKFGFADVARKVFDFMPERNVVPWTSIIGCY 145
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+ G E +LF M +G++P + SEL + G+A
Sbjct: 146 SRTGRVPEAFSLFDEMRRQGIQPSSVTMLSLLFGVSELAHVQC------------LHGSA 193
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
I G +++ ++NS++ Y KCR ++ S F + Q+D
Sbjct: 194 -----------------ILYGFMSDIN----LSNSMLSMYGKCRNIEYSRKLFDYMDQRD 232
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
LVSWN++++ YA G+ EV LL M + +P+ + VL+ A +KLG+ +
Sbjct: 233 LVSWNSLVSAYAQIGYICEVLLLLKTMRI--QGFEPDPQTFGSVLSVAASRGELKLGRCL 290
Query: 221 HGYVLRH----HIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
HG +LR H+ T+ G + + +F + +DVV+W ++IS V++G
Sbjct: 291 HGQILRTCFDLDAHVETSLIVMYLKGGNIDIAFRMFERSLDKDVVLWTAMISGLVQNGSA 350
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW-----------NAL 318
AL + R ++ VK +T T+ SV+ AC +L + G +++ N+L
Sbjct: 351 DKALAVFRQMLKFGVKSSTATMASVITACAQLGSYNLGTSVHGYMFRHELPMDIATQNSL 410
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ M+ +CG + +S +F M +NLVSWN MI+ Y
Sbjct: 411 VTMHAKCGHLDQSSIVFDKMNKRNLVSWNAMITGYA 446
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 166/345 (48%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ Y +GY E++ L M +G PD V + + ++G+ ++ +
Sbjct: 235 SWNSLVSAYAQIGYICEVLLLLKTMRIQGFEPDPQTFGSVLSVAASRGELKLGRCLHGQI 294
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F+ +A V+ L+ +++K G ++I +
Sbjct: 295 LRTCFDLDAHVETSLIVMYLKGGNIDIAFRM----------------------------- 325
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + KD+V W AM++G G ++ + +M++ ++ +T +++ V+ ACAQ+
Sbjct: 326 -FERSLDKDVVLWTAMISGLVQNGSADKALAVF--RQMLKFGVKSSTATMASVITACAQL 382
Query: 212 KGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSII 260
LG ++HGY+ RH + + A CG + S VF++++ R++V WN++I
Sbjct: 383 GSYNLGTSVHGYMFRHELPMDIATQNSLVTMHAKCGHLDQSSIVFDKMNKRNLVSWNAMI 442
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW----- 315
+ + ++G V AL L ++ + P+++TIVS+L C L G SFV
Sbjct: 443 TGYAQNGYVCKALFLFNEMRSDHQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLR 502
Query: 316 ------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+L+DMY +CG + +++ F MP +LVSW+ +I YG
Sbjct: 503 PCILVDTSLVDMYCKCGDLDIAQRCFNQMPSHDLVSWSAIIVGYG 547
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 133/288 (46%), Gaps = 45/288 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT+M+ G ++ + +F M+ GV+ V AC++L Y +G V+ YM
Sbjct: 337 WTAMISGLVQNGSADKALAVFRQMLKFGVKSSTATMASVITACAQLGSYNLGTSVHGYMF 396
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
E+ D NSL+ +AKC +L S
Sbjct: 397 R------------------------------HELPMDIATQNSLVTMHAKCGHLDQSSIV 426
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ-PNTISLSGVLAACAQV 211
F K+ +++LVSWNAM+ GYA G+ + L +EM ++D Q P++I++ +L CA
Sbjct: 427 FDKMNKRNLVSWNAMITGYAQNGYVCKALFLFNEM---RSDHQTPDSITIVSLLQGCAST 483
Query: 212 KGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ LGK IH +V+R+ + + CG + + FNQ+ + D+V W++II
Sbjct: 484 GQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLDIAQRCFNQMPSHDLVSWSAII 543
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
+ G+ AL + + +KPN V +SVL +C + QGL
Sbjct: 544 VGYGYHGKGETALRFYSKFLESGMKPNHVIFLSVLSSCSHNGLVEQGL 591
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 108/211 (51%), Gaps = 21/211 (9%)
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH- 221
S+NA++ ++ G +V L M++T + + + +L AC+ + LG ++H
Sbjct: 36 SFNAIINHHSSQGAHRQV--LATYASMLKTHVPSDAYTFPSLLKACSSLNLFSLGLSLHQ 93
Query: 222 ----------GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
Y+ I+ GF + VF+ + R+VV W SII + R+G+V +
Sbjct: 94 RILVSGLSLDAYIASSLINFYAKFGFADVARKVFDFMPERNVVPWTSIIGCYSRTGRVPE 153
Query: 272 ALDLLRDVIVANVKPNTVTIVSVL--------PACLKLAALPQGLGTGSFVWNALIDMYG 323
A L ++ ++P++VT++S+L CL +A+ G + + N+++ MYG
Sbjct: 154 AFSLFDEMRRQGIQPSSVTMLSLLFGVSELAHVQCLHGSAILYGFMSDINLSNSMLSMYG 213
Query: 324 RCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+C I+ SRK+F M ++LVSWN ++S Y
Sbjct: 214 KCRNIEYSRKLFDYMDQRDLVSWNSLVSAYA 244
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 81/195 (41%), Gaps = 32/195 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y GY + + LF M PD + + C+ +GK ++ ++
Sbjct: 437 SWNAMITGYAQNGYVCKALFLFNEMRSDHQTPDSITIVSLLQGCASTGQLHLGKWIHSFV 496
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I V L+D++ KCG ++I F +M SH
Sbjct: 497 IRNGLRPCILVDTSLVDMYCKCGDLDIAQRCFNQMP---------------------SH- 534
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
DLVSW+A++ GY G E T L + +++ M+PN + VL++C+
Sbjct: 535 --------DLVSWSAIIVGYGYHGKGE--TALRFYSKFLESGMKPNHVIFLSVLSSCSHN 584
Query: 212 KGVKLGKAIHGYVLR 226
V+ G I+ + R
Sbjct: 585 GLVEQGLNIYESMTR 599
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 69/155 (44%), Gaps = 30/155 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ LG +H+ +I G+ C + + L++++C +W++++
Sbjct: 486 LHLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLDIAQRCFNQMPSHDLVSWSAIIVG 545
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY-----DYMISI 94
Y G E + + ++ G++P+H + V +CS G ++Y D+ I+
Sbjct: 546 YGYHGKGETALRFYSKFLESGMKPNHVIFLSVLSSCSHNGLVEQGLNIYESMTRDFGIAP 605
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQD 129
E +ACV +DL + GR+E L+++ D
Sbjct: 606 NLEHHACV----VDLLSRAGRVEEAYNLYKKKFSD 636
>gi|326490736|dbj|BAJ90035.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511421|dbj|BAJ87724.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 801
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 171/356 (48%), Gaps = 58/356 (16%)
Query: 23 GSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDY 81
G + +EV W +M+ Y G + + ++LF ++ K V D A S+ +D
Sbjct: 271 GKKNIEV---WNTMITGYVQNGQFSQAMDLFIQILGSKEVPSDVVTFLSAVTAASQSQDV 327
Query: 82 RVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYA 141
R+G+ ++ Y++ G+ + ++ N+L+ Y+
Sbjct: 328 RLGQQLHGYLMK---------------------------GMHSTLP--VILGNALVVMYS 358
Query: 142 KCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISL 201
+C ++ + F ++ +KD+VSWN M+ + F ++ LL +M ++ P+T++L
Sbjct: 359 RCGNVQTAFELFDRLPEKDIVSWNTMITAFVQNDF--DLEGLLLVYQMQKSGFIPDTVTL 416
Query: 202 SGVLAACAQVKGVKLGKAIHGYVLRHHIH----------LSTACGFVICSCSVFNQLST- 250
+ VL+A + +++GK HGY++RH I + + G + + VF+
Sbjct: 417 TAVLSAASNTGDLQIGKQSHGYLIRHGIEGEGLESYLIDMYSKSGRIDMAQRVFDGYGND 476
Query: 251 RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-------- 302
RD V WN++I+ + +SGQ A+ R +I A V+P +VT+ SVLPAC +
Sbjct: 477 RDEVTWNAMIAGYTQSGQPEQAVLQFRAMIEAGVEPTSVTLASVLPACDPVGGGVCAGKQ 536
Query: 303 ----ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
AL L T FV AL+DMY +CG I + +F M K+ V++ MIS G
Sbjct: 537 IHSFALRHSLDTNVFVGTALVDMYSKCGEISAAENVFGGMTEKSTVTYTTMISGLG 592
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 82/345 (23%), Positives = 158/345 (45%), Gaps = 53/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W ++ G Y G +E + +F M++ GVRP V+ A G + ++
Sbjct: 175 SWNTLFGWYVKTGRPDEALEMFARMLEDGVRPTPVSFVNVFPAAGS------GDPSWPFL 228
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
L L IK G E D V +S I +++ ++ +
Sbjct: 229 --------------LYGLLIKHG---------VEYVNDLFVVSSAIGMFSEISDVQSARM 265
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +K++ WN M+ GY G + +L ++ + ++ + ++ + A +Q
Sbjct: 266 VFDRAGKKNIEVWNTMITGYVQNGQFSQAMDLFIQI-LGSKEVPSDVVTFLSAVTAASQS 324
Query: 212 KGVKLGKAIHGYVLRH-HIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSI 259
+ V+LG+ +HGY+++ H L + CG V + +F++L +D+V WN++
Sbjct: 325 QDVRLGQQLHGYLMKGMHSTLPVILGNALVVMYSRCGNVQTAFELFDRLPEKDIVSWNTM 384
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGT--------- 310
I+AFV++ ++ L L+ + + P+TVT+ +VL A L G +
Sbjct: 385 ITAFVQNDFDLEGLLLVYQMQKSGFIPDTVTLTAVLSAASNTGDLQIGKQSHGYLIRHGI 444
Query: 311 -GSFVWNALIDMYGRCGAIQKSRKIFVLMPH-KNLVSWNVMISVY 353
G + + LIDMY + G I ++++F + ++ V+WN MI+ Y
Sbjct: 445 EGEGLESYLIDMYSKSGRIDMAQRVFDGYGNDRDEVTWNAMIAGY 489
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 129/289 (44%), Gaps = 44/289 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ + + E + L Y M G PD V A S D ++GK + Y+
Sbjct: 380 SWNTMITAFVQNDFDLEGLLLVYQMQKSGFIPDTVTLTAVLSAASNTGDLQIGKQSHGYL 439
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I EG ++ L+D++ K GR+++ +F+ D
Sbjct: 440 IRHGIEGEG-LESYLIDMYSKSGRIDMAQRVFDGYGND---------------------- 476
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+D V+WNAM+AGY G E+ +L MI+ ++P +++L+ VL AC V
Sbjct: 477 -------RDEVTWNAMIAGYTQSGQPEQA--VLQFRAMIEAGVEPTSVTLASVLPACDPV 527
Query: 212 KG-VKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
G V GK IH + LRH + + + CG + + +VF ++ + V + ++
Sbjct: 528 GGGVCAGKQIHSFALRHSLDTNVFVGTALVDMYSKCGEISAAENVFGGMTEKSTVTYTTM 587
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
IS + G AL L + +KP+ VT ++ + AC + +GL
Sbjct: 588 ISGLGQHGFGERALSLFYSMRDKGLKPDAVTFLAAISACNYSGLVDEGL 636
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 125/260 (48%), Gaps = 46/260 (17%)
Query: 131 LVNNSLIDFYAKC-RYLK----VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
++ NSL++ YA C R+ + V F + +K++VSWN + Y G +E +
Sbjct: 138 VLRNSLLNLYASCARHRRGGVDVVRRLFDAMPKKNVVSWNTLFGWYVKTGRPDEALEMF- 196
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-------LSTACGF- 237
M++ ++P +S V A A ++G +++H + +S+A G
Sbjct: 197 -ARMLEDGVRPTPVSFVNVFPA-AGSGDPSWPFLLYGLLIKHGVEYVNDLFVVSSAIGMF 254
Query: 238 -----VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP-NTVTI 291
V + VF++ +++ VWN++I+ +V++GQ A+DL ++ + P + VT
Sbjct: 255 SEISDVQSARMVFDRAGKKNIEVWNTMITGYVQNGQFSQAMDLFIQILGSKEVPSDVVTF 314
Query: 292 VSVLPACLKL------------------AALPQGLGTGSFVWNALIDMYGRCGAIQKSRK 333
+S + A + + LP LG NAL+ MY RCG +Q + +
Sbjct: 315 LSAVTAASQSQDVRLGQQLHGYLMKGMHSTLPVILG------NALVVMYSRCGNVQTAFE 368
Query: 334 IFVLMPHKNLVSWNVMISVY 353
+F +P K++VSWN MI+ +
Sbjct: 369 LFDRLPEKDIVSWNTMITAF 388
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 46/188 (24%)
Query: 204 VLAACAQVKGVKLGKAIHGYVLRHH-------------IHLSTAC-----GFVICSCSVF 245
L ACA+ + ++LG+++H ++LR ++L +C G V +F
Sbjct: 106 ALTACARSRRLRLGRSVHAHLLRRARSLPDTAVLRNSLLNLYASCARHRRGGVDVVRRLF 165
Query: 246 NQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP 305
+ + ++VV WN++ +V++G+ +AL++ ++ V+P V+ V+V PA
Sbjct: 166 DAMPKKNVVSWNTLFGWYVKTGRPDEALEMFARMLEDGVRPTPVSFVNVFPAA------- 218
Query: 306 QGLGTGS--------------------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
G G S FV ++ I M+ +Q +R +F KN+
Sbjct: 219 -GSGDPSWPFLLYGLLIKHGVEYVNDLFVVSSAIGMFSEISDVQSARMVFDRAGKKNIEV 277
Query: 346 WNVMISVY 353
WN MI+ Y
Sbjct: 278 WNTMITGY 285
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 85/231 (36%), Gaps = 56/231 (24%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC----------------------NWTSMMG 38
+++G Q H +LI G+E L S L++++ W +M+
Sbjct: 429 LQIGKQSHGYLIRHGIE-GEGLESYLIDMYSKSGRIDMAQRVFDGYGNDRDEVTWNAMIA 487
Query: 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYR-VGKDVYDYMISIKFE 97
Y G E+ V F MI+ GV P V AC + GK ++ + + +
Sbjct: 488 GYTQSGQPEQAVLQFRAMIEAGVEPTSVTLASVLPACDPVGGGVCAGKQIHSFALRHSLD 547
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
N V L+D++ KCG + +F M
Sbjct: 548 TNVFVGTALVDMYSKCGEISAAENVFGGM------------------------------T 577
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
+K V++ M++G GF E +L M ++P+ ++ ++AC
Sbjct: 578 EKSTVTYTTMISGLGQHGFGERALSLF--YSMRDKGLKPDAVTFLAAISAC 626
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 21/147 (14%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G Q+H+ + ++ F+G+ L++++ +T+M+
Sbjct: 534 GKQIHSFALRHSLDTNVFVGTALVDMYSKCGEISAAENVFGGMTEKSTVTYTTMISGLGQ 593
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G+ E ++LFY M DKG++PD AC+ G +Y M +
Sbjct: 594 HGFGERALSLFYSMRDKGLKPDAVTFLAAISACNYSGLVDEGLSLYRSMETFGLAATPQH 653
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQD 129
++DL K GR++ E + +D
Sbjct: 654 HCCIVDLLAKAGRVDEAYDFVESLGED 680
>gi|225433310|ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Vitis vinifera]
Length = 625
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 164/354 (46%), Gaps = 64/354 (18%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ Y Y E LF M V PD F + K SEL GK ++ I
Sbjct: 92 WNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSI 151
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
I F D +V NS++ Y KC + S
Sbjct: 152 RIGFV------------------------------SDTVVANSIMSMYCKCGNFEESRKV 181
Query: 153 FSKIKQKDLVSWNAMLAGYALGG---FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F ++ ++ SWN ++AGYA+ G FREE + +M+M +++P+ ++S +L C
Sbjct: 182 FDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQM--DEVRPDAYTISSLLPLCD 239
Query: 210 QVKGV-KLGKAIHGYVLRHH--------IHLS-------TACGFVICSCSVFNQLSTRDV 253
KG G+ +H Y++++ +HL + V+ VF+++ R+V
Sbjct: 240 GDKGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNV 299
Query: 254 VVWNSIISAFVRSGQVVDALDLLRDV-IVANVKPNTVTIVSVLPACLKLAALPQGLGTGS 312
W ++I+ +V +G +AL L RD+ ++ ++PN V++VSVLPAC + L G
Sbjct: 300 FSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHG 359
Query: 313 F-----------VWNALIDMYGRCGAIQKSRKIFVLMPH-KNLVSWNVMISVYG 354
F + NALIDMY +CG++ +R++F K+ +SW+ MIS YG
Sbjct: 360 FAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYG 413
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 155/349 (44%), Gaps = 56/349 (16%)
Query: 32 NWTSMMGMYNVLG---YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK-DYRVGKDV 87
+W ++ Y V G + EE M VRPD + + C K + G+++
Sbjct: 192 SWNVLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDKGKWDYGREL 251
Query: 88 YDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147
+ Y++ + E+ GL D D + LID Y++ +
Sbjct: 252 HCYIV----------------------KNELVLGL----DSDVHLGCCLIDMYSRSNKVV 285
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
V F ++K +++ SW AM+ GY G +E +L +M++I ++PN +SL VL A
Sbjct: 286 VGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDG-IEPNRVSLVSVLPA 344
Query: 208 CAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLST-RDVVV 255
C+ G+ G+ IHG+ +R I + + CG + + VF S +D +
Sbjct: 345 CSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAIS 404
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW 315
W+S+IS + G+ +A+ L ++ A ++P+ +T V +L AC + + +GL S V
Sbjct: 405 WSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSSVI 464
Query: 316 N------------ALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMIS 351
N ++DM GR G + + MP + S W ++S
Sbjct: 465 NDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAMPVEPGPSVWGALVS 513
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 118/258 (45%), Gaps = 32/258 (12%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
+ Q+ L+ LI YA C++ S F ++ K++ WN+++ GYA E L +
Sbjct: 54 LSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFN 113
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-----------HHIHLSTA 234
+M +D+ P+ +LS + +++ + GK+IHG +R + +
Sbjct: 114 --QMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCK 171
Query: 235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV---VDALDLLRDVIVANVKPNTVTI 291
CG S VF++++ R+ WN +I+ + SG + + ++ + + V+P+ TI
Sbjct: 172 CGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTI 231
Query: 292 VSVLPAC----------------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIF 335
S+LP C + L GL + + LIDMY R + R++F
Sbjct: 232 SSLLPLCDGDKGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVF 291
Query: 336 VLMPHKNLVSWNVMISVY 353
M +N+ SW MI+ Y
Sbjct: 292 DRMKCRNVFSWTAMINGY 309
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 22/165 (13%)
Query: 212 KGVKLGKAIHGYVLR----HHIHLSTACGFVICSCS-------VFNQLSTRDVVVWNSII 260
K +KL + H +L + L+T F C VF+ L ++V +WNS+I
Sbjct: 37 KSLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLI 96
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG----------- 309
+ + ++ +A L + ++V P+ T+ ++ +L AL G
Sbjct: 97 NGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFV 156
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + V N+++ MY +CG ++SRK+F M +N SWNV+I+ Y
Sbjct: 157 SDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYA 201
>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
Length = 869
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 170/344 (49%), Gaps = 54/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W M+G Y G EE ++L++ M+ GVRPD + P V ++C + D+R+G++V+ ++
Sbjct: 162 SWNVMVGGYGKAGLLEEALDLYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHV 221
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ G EE+D V N+L+ YAKC + +
Sbjct: 222 LRF--------------------------GFAEEVD----VLNALMTMYAKCGDVVAARK 251
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + D +SWNAM+AG+ G L + M+Q ++QPN ++++ V A +
Sbjct: 252 VFDSMAVMDCISWNAMIAGHFENGECNAGLELF--LTMLQDEVQPNLMTITSVTVASGLL 309
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ K +HG ++ I + + G + + +VF+++ TRD + W ++I
Sbjct: 310 SDITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMI 369
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV---------LPACLKLAALPQGLGTG 311
S + ++G AL++ + V NV P+ +TI S L +KL L + G
Sbjct: 370 SGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFM 429
Query: 312 SF--VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
S+ V NAL++MY + I K+ ++F MP K++VSW+ MI+ +
Sbjct: 430 SYVVVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGF 473
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 110/223 (49%), Gaps = 24/223 (10%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+K+ ++D+ SWN M+ GY G EE +L M + ++P+ + VL +C V
Sbjct: 152 FAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRM--MWAGVRPDVYTFPCVLRSCGGVP 209
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++G+ +H +VLR + + CG V+ + VF+ ++ D + WN++I+
Sbjct: 210 DWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVFDSMAVMDCISWNAMIA 269
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGT 310
+G+ L+L ++ V+PN +TI SV A L+ A+ +G T
Sbjct: 270 GHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSDITFAKEMHGLAVKRGFAT 329
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
N+LI MY G + ++R +F M ++ +SW MIS Y
Sbjct: 330 DVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGY 372
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 135/314 (42%), Gaps = 45/314 (14%)
Query: 5 IQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPD 64
IQ++A L + G F + +WT+M+ Y G+ ++ + ++ LM V PD
Sbjct: 338 IQMYASLGMMGQARTVFSRMDTRDAM-SWTAMISGYEKNGFPDKALEVYALMEVNNVSPD 396
Query: 65 HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFE 124
I+I AC LD+ +K + + G
Sbjct: 397 D--------------------------ITIASALAACACLGSLDVGVKLHELAESKGFMS 430
Query: 125 EMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLL 184
+ +V N+L++ YAK + + + F + +KD+VSW++M+AG+ F L
Sbjct: 431 YV----VVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGFC---FNHRNFEAL 483
Query: 185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-----------HHIHLST 233
+ D++PN+++ LAACA ++ GK IH +VLR I L
Sbjct: 484 YYFRHMLADVKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIAYEGYLPNALIDLYV 543
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
CG + + F +DVV WN +I+ FV G AL ++ P+ VT V+
Sbjct: 544 KCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGNGETALSFFNQMVKIGECPDEVTFVA 603
Query: 294 VLPACLKLAALPQG 307
+L AC + + +G
Sbjct: 604 LLCACSRGGMVSEG 617
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 25/164 (15%)
Query: 205 LAACAQVK------GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
L ACA G++LG A+ ++R G + VF ++ RDV WN
Sbjct: 114 LRACAHADDRHAWFGLRLGNAMLSMLVRF--------GETWHAWRVFAKMPERDVFSWNV 165
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQG 307
++ + ++G + +ALDL ++ A V+P+ T VL +C + L G
Sbjct: 166 MVGGYGKAGLLEEALDLYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFG 225
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
V NAL+ MY +CG + +RK+F M + +SWN MI+
Sbjct: 226 FAEEVDVLNALMTMYAKCGDVVAARKVFDSMAVMDCISWNAMIA 269
Score = 40.8 bits (94), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 14/106 (13%)
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL-----GTGSFV 314
+ A GQ+ AL LL + P+ V++ C A+ GL
Sbjct: 69 LRALCSHGQLAQALWLLES---SAEPPDEDAYVALFRLCEWRRAVEPGLRACAHADDRHA 125
Query: 315 W------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
W NA++ M R G + ++F MP +++ SWNVM+ YG
Sbjct: 126 WFGLRLGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYG 171
>gi|222628408|gb|EEE60540.1| hypothetical protein OsJ_13880 [Oryza sativa Japonica Group]
Length = 594
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 149/287 (51%), Gaps = 14/287 (4%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W M+ Y YEE + LF+ M V PD + V C+ ++ R GK ++ YM+
Sbjct: 138 WGVMLDCYCQARNYEEALLLFHSMKRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYML 197
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHC 151
+A V L++++ C ME+ L+ + +++ +++ +++ YAK ++++H
Sbjct: 198 VSDTLIDAQVSCALMNMYASCADMEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHS 257
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ + KD+VSW+AM+AGYA E NL +M+ ++ ++P+ I++ V++ACA V
Sbjct: 258 IFNGMPAKDVVSWSAMIAGYAESSKPMEALNLFHDMQ--RSGVKPDEITMLSVISACANV 315
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ + IH +V H I + + CG + + VFN + ++VV W SII
Sbjct: 316 GALEKARCIHSFVENHSMCKILPIGNALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSII 375
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
+A G AL L ++ ++PN VT + +L AC + +G
Sbjct: 376 TASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEG 422
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 131/277 (47%), Gaps = 55/277 (19%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D V +L+ YA C ++ + F + +DLV+W ML Y EE L M+
Sbjct: 103 DGFVGTALVRAYAACGRVEDARRVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMK 162
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL----------------------- 225
++ + P+ + ++ VL+ CA + ++ GKAIH Y+L
Sbjct: 163 --RSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCAD 220
Query: 226 ------------RHHIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
I LST G V + S+FN + +DVV W+++I+ + S
Sbjct: 221 MEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAES 280
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------W 315
+ ++AL+L D+ + VKP+ +T++SV+ AC + AL + SFV
Sbjct: 281 SKPMEALNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPIG 340
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
NALIDM+ +CG++ + +F MP KN+V+W +I+
Sbjct: 341 NALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITA 377
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 101/249 (40%), Gaps = 55/249 (22%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY- 90
+W++M+ Y E +NLF+ M GV+PD V AC+ + + ++ +
Sbjct: 269 SWSAMIAGYAESSKPMEALNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIHSFV 328
Query: 91 ----MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL 146
M I GNA L+D+F KCG + + +F M
Sbjct: 329 ENHSMCKILPIGNA-----LIDMFSKCGSLTLALDVFNAM-------------------- 363
Query: 147 KVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
QK++V+W +++ A+ G L + M+ +QPN ++ G+L
Sbjct: 364 ----------PQKNVVTWTSIITASAMHGDGRSALTLFENMK--SEGIQPNGVTFLGLLY 411
Query: 207 ACAQVKGVKLGKAIHGYVLRHH----IHLSTAC--------GFVICSCSVFNQLSTR-DV 253
AC V+ G+ + +++ + +H C + + + + R +V
Sbjct: 412 ACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMHLRPNV 471
Query: 254 VVWNSIISA 262
V+W S+++A
Sbjct: 472 VIWGSLLAA 480
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 15/75 (20%)
Query: 294 VLPACLKLAALPQGLGTGS---------------FVWNALIDMYGRCGAIQKSRKIFVLM 338
LP+ L+ A + LGT FV AL+ Y CG ++ +R++F M
Sbjct: 71 ALPSLLRAIAFARSLGTAGAAHGLAFRVGAEVDGFVGTALVRAYAACGRVEDARRVFDGM 130
Query: 339 PHKNLVSWNVMISVY 353
P ++LV+W VM+ Y
Sbjct: 131 PDRDLVAWGVMLDCY 145
>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 919
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 102/391 (26%), Positives = 175/391 (44%), Gaps = 75/391 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G Q+H++L+ G+ + LL+++ W M+ Y
Sbjct: 263 GKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQ 322
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+ + +LF M+ GVRP+ F P + + C+ + +G+ ++ I FE
Sbjct: 323 ISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFE----- 377
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
D V+ LID Y+K +L + ++ KD+V
Sbjct: 378 -------------------------SDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVV 412
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH- 221
SW +M+AGY F +E +M++ + P+ I L+ ++ACA +K ++ G+ IH
Sbjct: 413 SWTSMIAGYVQHEFCKEALETFKDMQLF--GIWPDNIGLASAISACAGIKAMRQGQQIHS 470
Query: 222 -----GY-----VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
GY + ++L CG + S+F + +D + WN ++S F +SG +
Sbjct: 471 RVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEE 530
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTG----SFVWNALID 320
AL++ + A VK N T VS + A LA + QG + TG + V NALI
Sbjct: 531 ALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALIS 590
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+YG+CG+I+ ++ F M +N VSWN +I+
Sbjct: 591 LYGKCGSIEDAKMQFFEMSERNHVSWNTIIT 621
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 152/345 (44%), Gaps = 56/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ Y + +E + F M G+ PD+ AC+ +K R G+ ++ +
Sbjct: 413 SWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRV 472
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ D + N+L++ YA+C K +
Sbjct: 473 YVSGYSA------------------------------DVSIWNALVNLYARCGRSKEAFS 502
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F I+ KD ++WN M++G+A G EE + ++M Q ++ N + ++A A +
Sbjct: 503 LFEAIEHKDKITWNGMVSGFAQSGLYEEALEVF--IKMYQAGVKYNVFTFVSSISASANL 560
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+K GK IH V++ I L CG + + F ++S R+ V WN+II
Sbjct: 561 ADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTII 620
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
++ + G ++ALDL + +KPN VT + VL AC + + +GLG +
Sbjct: 621 TSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGI 680
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ ++D+ GR G + ++RK MP N + W ++S
Sbjct: 681 HPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSA 725
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 90/390 (23%), Positives = 172/390 (44%), Gaps = 75/390 (19%)
Query: 7 VHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNVLGY 45
+HA I CG+ G+ L++++ +W +M+ Y G
Sbjct: 64 IHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGL 123
Query: 46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP 105
EE V L++ M GV P +V V AC++ + G+ V+ + ++ +C
Sbjct: 124 GEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQV----YKQGSC---- 175
Query: 106 LLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWN 165
+ +V N+LI Y + L ++ FS++ D V++N
Sbjct: 176 ----------------------SETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFN 213
Query: 166 AMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL 225
+++ +A G E + +EM + + P+ ++++ +LAACA + + GK +H Y+L
Sbjct: 214 TLISRHAQCGNGESALEIFEEMRL--SGWTPDCVTIASLLAACASIGDLNKGKQLHSYLL 271
Query: 226 RHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALD 274
+ + L CG ++ + +F +VV+WN ++ A+ + + + D
Sbjct: 272 KAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFD 331
Query: 275 LLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQGLGTGSFVWNALIDMYG 323
L ++ A V+PN T +L C + L ++ G + +V LIDMY
Sbjct: 332 LFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYS 391
Query: 324 RCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ G + K+R+I ++ K++VSW MI+ Y
Sbjct: 392 KYGWLDKARRILEVLEAKDVVSWTSMIAGY 421
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 126/259 (48%), Gaps = 28/259 (10%)
Query: 118 ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFR 177
IT GL E D + N LID YAK ++ + F ++ +D VSW AML+GYA G
Sbjct: 69 ITCGLGE----DRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLG 124
Query: 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH--------- 228
EE L +M + + P LS VL+AC + + G+ +H V +
Sbjct: 125 EEAVGLYHQMHC--SGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGN 182
Query: 229 --IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286
I L G + + VF+++ D V +N++IS + G AL++ ++ ++ P
Sbjct: 183 ALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTP 242
Query: 287 NTVTIVSVLPACLKLAALPQGLGTGSFVWNA-----------LIDMYGRCGAIQKSRKIF 335
+ VTI S+L AC + L +G S++ A L+D+Y +CG I ++ +IF
Sbjct: 243 DCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIF 302
Query: 336 VLMPHKNLVSWNVMISVYG 354
N+V WN+M+ YG
Sbjct: 303 KSGDRTNVVLWNLMLVAYG 321
>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240 [Vitis vinifera]
Length = 565
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 93/347 (26%), Positives = 163/347 (46%), Gaps = 61/347 (17%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W SM+ Y++ +E + ++ M KG PDHF P V KACS + Y +G+ V++ ++
Sbjct: 73 WNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCIV 132
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
FE + LL ++ CG ME LKV
Sbjct: 133 KTGFEVDVYAATALLQMYAACGDMEAA--------------------------LKV---- 162
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I + ++V+W +++AG E + +ME+ + PN I++ VL ACA+ +
Sbjct: 163 FDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDMELWS--VAPNEITMVNVLVACARSR 220
Query: 213 GVKLGKAIHGYVLR-----------HHIHLSTA-------CGFVICSCSVFNQLSTRDVV 254
+ G+ +H + ++ L+TA CG + + +FN++ R++V
Sbjct: 221 DLNAGRWVHDRTGQMGLDPFQSNSNFNVILATAIVDMYAKCGSLKTARDLFNKMPHRNLV 280
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------- 307
WNS+I A+ + GQ +ALDL D+ +A P+ T + V+ AC L AL G
Sbjct: 281 AWNSMIGAYNQYGQANEALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYV 340
Query: 308 ----LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
L + + AL+DMY + G ++++++F + K++ +W +I
Sbjct: 341 SKTNLTDDTAIGTALVDMYAKSGDAERAQQVFSELQKKDVTAWTSLI 387
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 127/257 (49%), Gaps = 33/257 (12%)
Query: 128 QDFLVNNSLIDF--YAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
QD + + L+DF Y+ L + F++I + L WN+M+ GY++ +E +
Sbjct: 35 QDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLYIWNSMIKGYSISESPDEALTMYR 94
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTA 234
EM Q P+ + VL AC+ V G LG+ +H Y + + A
Sbjct: 95 EMR--QKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCIVKTGFEVDVYAATALLQMYAA 152
Query: 235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV 294
CG + + VF+ + +VV W S+I+ + + +A+ + +D+ + +V PN +T+V+V
Sbjct: 153 CGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDMELWSVAPNEITMVNV 212
Query: 295 LPACLKLAALPQG---------LGTGSFVWN---------ALIDMYGRCGAIQKSRKIFV 336
L AC + L G +G F N A++DMY +CG+++ +R +F
Sbjct: 213 LVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNVILATAIVDMYAKCGSLKTARDLFN 272
Query: 337 LMPHKNLVSWNVMISVY 353
MPH+NLV+WN MI Y
Sbjct: 273 KMPHRNLVAWNSMIGAY 289
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 116/268 (43%), Gaps = 57/268 (21%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH--FVCPKVYKACSELKDYRVGKDVYDY 90
W SM+G YN G E ++LF M G PD F+C V AC+ L G+ ++ Y
Sbjct: 282 WNSMIGAYNQYGQANEALDLFSDMRIAGFDPDKATFLC--VIGACAHLGALVSGQALHAY 339
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ K L D D + +L+D YAK + +
Sbjct: 340 V----------SKTNLTD--------------------DTAIGTALVDMYAKSGDAERAQ 369
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
FS++++KD+ +W +++ G A+ G EE +M+ T + P+ I+ GVL+AC+
Sbjct: 370 QVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQE-DTALIPDEITYIGVLSACSH 428
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
V V+ GK H I + G + +T+ + ++ R+G++
Sbjct: 429 VGKVEDGK-------NHFISMKNVHGI---------EPTTQH---YGCMVDLLSRAGRLG 469
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPAC 298
+A L+ + V+PNT ++L C
Sbjct: 470 EAERLVEKM---PVEPNTAIWSALLNGC 494
>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 804
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 92/376 (24%), Positives = 165/376 (43%), Gaps = 58/376 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT M+ N G + E + M G P F V +C+ + VG+ V+ ++
Sbjct: 131 SWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFV 190
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSH 150
+ + V +L+++ KCG E + +FE M + + N+++ + ++
Sbjct: 191 VKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAE 250
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + + +VSWNAM+AGY G + L M + ++ M P+ +++ VL+ACA
Sbjct: 251 SLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRM-LHESSMAPDEFTITSVLSACAN 309
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVICSC---------------------------- 242
+ V++GK +H Y+LR + ++ + S
Sbjct: 310 LGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFT 369
Query: 243 ----------------SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286
+F ++ RDVV W ++I + ++G+ +A+DL R +I +P
Sbjct: 370 ALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEP 429
Query: 287 NTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIF 335
N+ T+ +VL C LA L G L S V NA+I MY R G+ +R++F
Sbjct: 430 NSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMF 489
Query: 336 -VLMPHKNLVSWNVMI 350
+ K ++W MI
Sbjct: 490 DQVCWRKETITWTSMI 505
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 165/350 (47%), Gaps = 31/350 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W +M+ YN G + + LF M+ + + PD F V AC+ L + R+GK V+ Y
Sbjct: 263 SWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAY 322
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFE---EMDQDFLVNNSLIDFYAKCRYLK 147
++ + N+ V L+ + K G +E + + E D + + +L++ Y K ++
Sbjct: 323 ILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDME 382
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
+ F + +D+V+W AM+ GY G +E +L MI +PN+ +L+ VL+
Sbjct: 383 SAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLF--RSMITCGPEPNSYTLAAVLSV 440
Query: 208 CAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSC-----------SVFNQLSTR-DVVV 255
CA + + GK IH +R + S++ I + +F+Q+ R + +
Sbjct: 441 CASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETIT 500
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW 315
W S+I A + GQ +A+ L +++ A V+P+ +T V VL AC + +G +
Sbjct: 501 WTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIK 560
Query: 316 NA------------LIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
N ++D+ R G ++++ MP + ++W ++S
Sbjct: 561 NEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSA 610
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/354 (22%), Positives = 149/354 (42%), Gaps = 69/354 (19%)
Query: 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIK----CGRMEIT 119
DH+ ++ + C + G+ ++ + +A + LL + + G +
Sbjct: 27 DHYA--RLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDA 84
Query: 120 SGLFEEMD---QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGG- 175
LF+E+ ++ NSL+ +AK L + F+++ ++D VSW M+ G G
Sbjct: 85 RRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGR 144
Query: 176 FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR--------- 226
F E + LLD M P +L+ VL++CA + +G+ +H +V++
Sbjct: 145 FGEAIKTLLD---MTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPV 201
Query: 227 ---------------------------------HHIHLSTACGFVICSCSVFNQLSTRDV 253
+ L+T G + + S+F + R +
Sbjct: 202 ANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSI 261
Query: 254 VVWNSIISAFVRSGQVVDALDLL-RDVIVANVKPNTVTIVSVLPACLKLAALPQG----- 307
V WN++I+ + ++G AL L R + +++ P+ TI SVL AC L + G
Sbjct: 262 VSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHA 321
Query: 308 ------LGTGSFVWNALIDMYGRCGAIQKSRKIF--VLMPHKNLVSWNVMISVY 353
+ S V NALI Y + G+++ +R+I + N++S+ ++ Y
Sbjct: 322 YILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGY 375
>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
Length = 852
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 109/427 (25%), Positives = 177/427 (41%), Gaps = 108/427 (25%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCN-----WTSMMGMYNVLGYYEEIVNLFYLM 56
LG V A + CG A L +LE W ++ + G + +N+ M
Sbjct: 52 SLGTGVVASYLACGATDYALL---VLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRM 108
Query: 57 IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM 116
+ G R DHF P V KAC EL YR G + + FE N + L+ ++ +CG +
Sbjct: 109 LRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSL 168
Query: 117 EITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGF 176
E S +F+E+ Q + D++SWN++++ +
Sbjct: 169 EEASMIFDEITQRGI---------------------------DDVISWNSIVSAHVKSSN 201
Query: 177 REEVTNLLDEMEMI----QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS 232
+L +M +I T+ + + IS+ +L AC +K V K +HG +R+ L
Sbjct: 202 AWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLD 261
Query: 233 -----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV----------- 270
CG + + VFN + +DVV WN++++ + +SG
Sbjct: 262 VFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRK 321
Query: 271 ------------------------DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ 306
+AL++ R +I + PN VTI+SVL AC L A Q
Sbjct: 322 ENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQ 381
Query: 307 GLGTGSF---------------------VWNALIDMYGRCGAIQKSRKIFVLMP--HKNL 343
G+ ++ V+NALIDMY +C + + +R IF +P +N+
Sbjct: 382 GMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNV 441
Query: 344 VSWNVMI 350
V+W VMI
Sbjct: 442 VTWTVMI 448
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/349 (27%), Positives = 158/349 (45%), Gaps = 48/349 (13%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WT+++ Y+ G E +N+F MI G P+ V AC+ L + G +++ Y
Sbjct: 330 TWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYS 389
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ K LL L F D+D +V N+LID Y+KCR K +
Sbjct: 390 L----------KNCLLTL----------DNDFGGEDEDLMVYNALIDMYSKCRSFKAARS 429
Query: 152 KFSKI--KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F I +++++V+W M+ G+A G + L EM + PN ++S +L ACA
Sbjct: 430 IFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACA 489
Query: 210 QVKGVKLGKAIHGYVLRHHIHLSTA-------------CGFVICSCSVFNQLSTRDVVVW 256
+ +++GK IH YVLRHH + S+A CG V + VF+ +S + + W
Sbjct: 490 HLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISW 549
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG------- 309
S+++ + G+ +ALD+ + A P+ +T + VL AC + QGL
Sbjct: 550 TSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSA 609
Query: 310 -----TGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ + ID+ R G + K+ K MP V W ++S
Sbjct: 610 DYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSA 658
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 151/336 (44%), Gaps = 45/336 (13%)
Query: 62 RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSG 121
R D + AC LK K+V+ I + V L+D + KCG ME
Sbjct: 224 RSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVK 283
Query: 122 LFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK----DLVSWNAMLAGYALGGF 176
+F M+ +D + N+++ Y++ K + F ++++ D+V+W A++AGY+ G
Sbjct: 284 VFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGC 343
Query: 177 REEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH--------- 227
E N+ +MI + PN +++ VL+ACA + G IH Y L++
Sbjct: 344 SHEALNVF--RQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDF 401
Query: 228 ------------HIHLSTACGFVICSCSVFNQ--LSTRDVVVWNSIISAFVRSGQVVDAL 273
I + + C + S+F+ L R+VV W +I + G DAL
Sbjct: 402 GGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDAL 461
Query: 274 DLLRDVIVA--NVKPNTVTIVSVLPACLKLAALPQGL-------------GTGSFVWNAL 318
L ++I V PN TI +L AC LAA+ G + FV N L
Sbjct: 462 KLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCL 521
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
I+MY +CG + +R +F M K+ +SW M++ YG
Sbjct: 522 INMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYG 557
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 114/232 (49%), Gaps = 33/232 (14%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
++ V WN ++ + G + N+ M++ + + +L VL AC ++
Sbjct: 74 LERVTPSPAVWWNLLIREHIKQGRLDSAINV--SCRMLRAGTRLDHFTLPHVLKACGELP 131
Query: 213 GVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTR---DVVVWNS 258
+ G A HG ++ + + + CG + + +F++++ R DV+ WNS
Sbjct: 132 SYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNS 191
Query: 259 IISAFVRSGQVVDALDLLRDVIV------ANVKPNTVTIVSVLPACLKLAALPQ------ 306
I+SA V+S ALDL + + N + + ++IV++LPAC L A+PQ
Sbjct: 192 IVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHG 251
Query: 307 -----GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G FV NALID Y +CG ++ + K+F +M K++VSWN M++ Y
Sbjct: 252 NAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGY 303
>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 895
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 161/345 (46%), Gaps = 56/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M+ Y LG +E V LF MID G PD +AC + D +VGK V+ Y+
Sbjct: 290 TWNTMICGYAQLGRHEASVKLFMDMID-GFVPDMLSITSTIRACGQSGDLQVGKFVHKYL 348
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I FE C D + N LID YAKC L +
Sbjct: 349 IGSGFE---------------C---------------DTVACNILIDMYAKCGDLLAAQE 378
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K KD V+WN+++ GY G+ +E L+ +M++ + +P++++ +L+ +Q+
Sbjct: 379 VFDTTKCKDSVTWNSLINGYTQSGYYKEG---LESFKMMKMERKPDSVTFVLLLSIFSQL 435
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ G+ IH V++ + + CG + VF+ +S D++ WN++I
Sbjct: 436 ADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVI 495
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW----- 315
++ V ++ ++ + P+ T++ +LP C LA QG +++
Sbjct: 496 ASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFE 555
Query: 316 ------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
NALI+MY +CG+++ K+F M K++V+W +IS +G
Sbjct: 556 SNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFG 600
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/394 (24%), Positives = 174/394 (44%), Gaps = 77/394 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ELG VH H + G E ++G+ L++++ +W S++
Sbjct: 137 LELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISG 196
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G++E+ +++++ G+ PD F V AC L + G V+ + I G
Sbjct: 197 YCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAG- 255
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D ++ N L+ Y K L+ + FSK+ K
Sbjct: 256 -----------------------------DVIIGNGLLSMYFKFERLREARRVFSKMAVK 286
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D V+WN M+ GYA G E L M+MI P+ +S++ + AC Q +++GK
Sbjct: 287 DSVTWNTMICGYAQLGRHEASVKLF--MDMID-GFVPDMLSITSTIRACGQSGDLQVGKF 343
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H Y++ I + CG ++ + VF+ +D V WNS+I+ + +SG
Sbjct: 344 VHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGY 403
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-----------TGSFVWNA 317
+ L+ + ++ KP++VT V +L +LA + QG G + N+
Sbjct: 404 YKEGLESFK-MMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNS 462
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
L+D+Y +CG + K+F M +++SWN +I+
Sbjct: 463 LLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIA 496
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 163/343 (47%), Gaps = 55/343 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ G + + + + M +K ++PD F P V +C+ + D +G V+++ +
Sbjct: 89 WNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAM 148
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ FE DL+I N+LID Y++ L +
Sbjct: 149 EMGFES---------DLYI---------------------GNALIDMYSRFVDLDNARYV 178
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ +D VSWN++++GY GF E+ ++ + M T M P+ ++S VL AC +
Sbjct: 179 FEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRM--TGMVPDCFTMSSVLLACGSLM 236
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSC-----------SVFNQLSTRDVVVWNSIIS 261
VK G A+HG + + I G + S VF++++ +D V WN++I
Sbjct: 237 AVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMIC 296
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTG--- 311
+ + G+ ++ L D+I V P+ ++I S + AC + L G +G+G
Sbjct: 297 GYAQLGRHEASVKLFMDMIDGFV-PDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFEC 355
Query: 312 -SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ N LIDMY +CG + ++++F K+ V+WN +I+ Y
Sbjct: 356 DTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGY 398
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 91/398 (22%), Positives = 161/398 (40%), Gaps = 80/398 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLL--------------EVF--------CNWTSMMG 38
+++G VH +LI G E C + +L EVF W S++
Sbjct: 338 LQVGKFVHKYLIGSGFE-CDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLIN 396
Query: 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
Y GYY+E + F +M +PD + S+L D G+ ++ +I FE
Sbjct: 397 GYTQSGYYKEGLESFKMM-KMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEA 455
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
+ ++ NSL+D YAKC + FS +
Sbjct: 456 ------------------------------ELIIGNSLLDVYAKCGEMDDLLKVFSYMSA 485
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
D++SWN ++A F + EM + P+ ++ G+L C+ + + GK
Sbjct: 486 HDIISWNTVIASSV--HFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGK 543
Query: 219 AIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
IHGY+ + I + + CG + VF + +DVV W ++ISAF G
Sbjct: 544 EIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYG 603
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------W 315
+ AL +D+ ++ V P++V ++ + AC + +GL + +
Sbjct: 604 EGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHY 663
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMISV 352
++D+ R G + ++ + + MP K S W ++S
Sbjct: 664 ACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSA 701
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 116/260 (44%), Gaps = 29/260 (11%)
Query: 118 ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS-WNAMLAGYALGGF 176
ITSGL + + LI YA+ + S F I + V WN+++ G
Sbjct: 46 ITSGL----SLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGL 101
Query: 177 REEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACG 236
+ EM + +QP+ + V+ +CA++ ++LG +H + + G
Sbjct: 102 FTQALGYYTEMR--EKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIG 159
Query: 237 ---------FVICSCS--VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK 285
FV + VF ++S RD V WNS+IS + +G DALD+ + +
Sbjct: 160 NALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMV 219
Query: 286 PNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKI 334
P+ T+ SVL AC L A+ +G+ + N L+ MY + ++++R++
Sbjct: 220 PDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRV 279
Query: 335 FVLMPHKNLVSWNVMISVYG 354
F M K+ V+WN MI Y
Sbjct: 280 FSKMAVKDSVTWNTMICGYA 299
>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
Length = 1161
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 163/347 (46%), Gaps = 54/347 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W+++M + + G + ++LF M +G+ P+ F KAC L G ++ +
Sbjct: 445 SWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFC 504
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ I FE + ++ G NSL+D Y+KC + +
Sbjct: 505 LKIGFE-----------MMVEVG-------------------NSLVDMYSKCGRINEAEK 534
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I + L+SWNAM+AG+ G+ + + M+ +P+ +L+ +L AC+
Sbjct: 535 VFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSST 594
Query: 212 KGVKLGKAIHGYVLRHHIH-------------LSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ GK IHG+++R H L CG++ + F+Q+ + ++ W+S
Sbjct: 595 GMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSS 654
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL---------- 308
+I + + G+ V+A+ L + + N + ++ + S++ A L QG
Sbjct: 655 LILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLP 714
Query: 309 -GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G + V N+++DMY +CG + ++ K F M K+++SW V+I+ YG
Sbjct: 715 SGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYG 761
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 125/252 (49%), Gaps = 28/252 (11%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
+ + +N LID Y KCR +++ F + ++++VSW+A+++G+ L G + +L EM
Sbjct: 411 NLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMG 470
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-----------HHIHLSTACGF 237
+ + PN + S L AC + ++ G IHG+ L+ + + + CG
Sbjct: 471 --RQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGR 528
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK--PNTVTIVSVL 295
+ + VF ++ R ++ WN++I+ FV +G ALD + AN+K P+ T+ S+L
Sbjct: 529 INEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLL 588
Query: 296 PACLKLAALPQGLGTGSF-------------VWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
AC + G F + +L+D+Y +CG + +RK F + K
Sbjct: 589 KACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKT 648
Query: 343 LVSWNVMISVYG 354
++SW+ +I Y
Sbjct: 649 MISWSSLILGYA 660
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/401 (20%), Positives = 174/401 (43%), Gaps = 81/401 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G+Q+H + G E+ +G+ L++++ +W +M+
Sbjct: 494 LEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAG 553
Query: 40 YNVLGYYEEIVNLFYLMIDKGV--RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
+ GY + ++ F +M + + RPD F + KACS GK ++ +++ F
Sbjct: 554 FVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFH 613
Query: 98 --GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSK 155
+A + L+DL++KCG YL + F +
Sbjct: 614 CPSSATITGSLVDLYVKCG------------------------------YLFSARKAFDQ 643
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA------ 209
IK+K ++SW++++ GYA G E L ++ + + Q ++ +LS ++ A
Sbjct: 644 IKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNS--QIDSFALSSIIGVFADFALLR 701
Query: 210 -----QVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
Q VKL + VL + + CG V + F ++ +DV+ W +I+ +
Sbjct: 702 QGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYG 761
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV---------- 314
+ G ++ + +++ N++P+ V ++VL AC + +G S +
Sbjct: 762 KHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRV 821
Query: 315 --WNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
+ ++D+ GR G +++++ + MP K N+ W ++S+
Sbjct: 822 EHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSL 862
>gi|302790562|ref|XP_002977048.1| hypothetical protein SELMODRAFT_106624 [Selaginella moellendorffii]
gi|300155024|gb|EFJ21657.1| hypothetical protein SELMODRAFT_106624 [Selaginella moellendorffii]
Length = 883
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 104/396 (26%), Positives = 175/396 (44%), Gaps = 82/396 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G ++HAH++ G+ FLG LL+++ +W ++ +
Sbjct: 64 GRRIHAHIVASGLASDGFLGDHLLQMYGKCGSVDDAIQVFHALPRRSLFSWNFIIAAFAK 123
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+ + + +F M G++PD V ACS L+D G+ ++
Sbjct: 124 NRHGRKAIEMFRSMDSAGIKPDSATLSSVLGACSSLRDLEEGRRIH-------------- 169
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
GR I+SG F+ +V L+ YA+C L+ + F +I+ KD++
Sbjct: 170 -----------GR--ISSGEFQ---SGIVVETGLVKMYARCGRLREAREVFDRIENKDVI 213
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
WN+M+A YA GG + L +EME ++ + + +G+L AC+ ++ GK IH
Sbjct: 214 CWNSMIAAYAQGGHSAQARQLCEEMEGF--GVKASDTTFAGILGACSSLEE---GKKIHS 268
Query: 223 YVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
L + S C + + VF+++ DVV W ++I A+ + G+ +
Sbjct: 269 RALARGLSSSIIVQNALISMYGKCNELDAARRVFSKVRAHDVVSWTALIVAYTQHGRNRE 328
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPAC-------------LKLAALPQGLGTGSFVWNAL 318
AL+L + + ++P+ VT SVL AC +L A G G V AL
Sbjct: 329 ALELYKQMEGEGMEPDKVTFTSVLSACSNTNDLELGQALHARLLARKDGFSDGVLV-AAL 387
Query: 319 IDMYGRCGAIQKSRKIF-VLMPHKNLVSWNVMISVY 353
I+MY +CG + S +IF K +V WN MI+ Y
Sbjct: 388 INMYVKCGRLDLSSEIFQSCKDTKAVVVWNAMITAY 423
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/348 (27%), Positives = 169/348 (48%), Gaps = 58/348 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+++ Y G E + L+ M +G+ PD V ACS D +G+ ++ +
Sbjct: 312 SWTALIVAYTQHGRNREALELYKQMEGEGMEPDKVTFTSVLSACSNTNDLELGQALHARL 371
Query: 92 ISIK--FEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
++ K F V L+++++KCGR++++S +F+
Sbjct: 372 LARKDGFSDGVLVA-ALINMYVKCGRLDLSSEIFQS------------------------ 406
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
CK +K +V WNAM+ Y G+ +L D M+ Q + P+ +LS +L+ACA
Sbjct: 407 -CKDTKA----VVVWNAMITAYEQEGYSRAAVDLYDMMK--QRGLDPDESTLSSILSACA 459
Query: 210 QVKGVKLGKAIH------------GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWN 257
++K ++ G+ +H VL I + +CG + + +VF ++ RDVV W
Sbjct: 460 ELKDLEKGEQVHVEIIASRDCSQNPVVLNALISMYASCGEIREAKAVFKRMKNRDVVSWT 519
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL--------- 308
+ISA+V+ G AL L R ++V V+P VT+++V+ AC + +L +G+
Sbjct: 520 ILISAYVQGGDARRALRLYRRMLVEGVQPTEVTMLAVIAACSAMESLWEGIVIHALTDSM 579
Query: 309 -GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH--KNLVSWNVMISVY 353
T + V ALI MY RC + + ++F + H + WN M++ Y
Sbjct: 580 FFTDTAVQAALISMYARCRRLDLACQVFRQVRHLESSANCWNAMLAAY 627
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 85/346 (24%), Positives = 150/346 (43%), Gaps = 57/346 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y GY V+L+ +M +G+ PD + AC+ELKD G+ V+ +I
Sbjct: 416 WNAMITAYEQEGYSRAAVDLYDMMKQRGLDPDESTLSSILSACAELKDLEKGEQVHVEII 475
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ + C + P+ V N+LI YA C ++ +
Sbjct: 476 ASR----DCSQNPV-------------------------VLNALISMYASCGEIREAKAV 506
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++K +D+VSW +++ Y GG + L M+ +QP +++ V+AAC+ ++
Sbjct: 507 FKRMKNRDVVSWTILISAYVQGG--DARRALRLYRRMLVEGVQPTEVTMLAVIAACSAME 564
Query: 213 GVKLGKAIHGY----------VLRHHIHLSTACGFVICSCSVFNQLSTRDVVV--WNSII 260
+ G IH V I + C + +C VF Q+ + WN+++
Sbjct: 565 SLWEGIVIHALTDSMFFTDTAVQAALISMYARCRRLDLACQVFRQVRHLESSANCWNAML 624
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW----- 315
+A+ + G + + L ++ +K N T L AC L A+ +G V
Sbjct: 625 AAYSQLGLPEEGIRLYWEMSSTGIKANEGTFAGALAACSMLGAVREGYRIHEQVSSSRYS 684
Query: 316 ------NALIDMYGRCGAIQKSRKIF-VLMPHKNLVSWNVMISVYG 354
AL+ MY +C + + +F L P ++V+WN MI+ Y
Sbjct: 685 SDLSLKTALVHMYAKCNRVDAAFHVFEQLQP--DVVAWNAMIAAYA 728
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 90/177 (50%), Gaps = 22/177 (12%)
Query: 200 SLSGVLAACAQVKGVKLGKAIH-----------GYVLRHHIHLSTACGFVICSCSVFNQL 248
+ + +L C + G+ IH G++ H + + CG V + VF+ L
Sbjct: 47 TYAALLKHCGNAAALPQGRRIHAHIVASGLASDGFLGDHLLQMYGKCGSVDDAIQVFHAL 106
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG- 307
R + WN II+AF ++ A+++ R + A +KP++ T+ SVL AC L L +G
Sbjct: 107 PRRSLFSWNFIIAAFAKNRHGRKAIEMFRSMDSAGIKPDSATLSSVLGACSSLRDLEEGR 166
Query: 308 -----LGTGSF-----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ +G F V L+ MY RCG ++++R++F + +K+++ WN MI+ Y
Sbjct: 167 RIHGRISSGEFQSGIVVETGLVKMYARCGRLREAREVFDRIENKDVICWNSMIAAYA 223
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/273 (21%), Positives = 107/273 (39%), Gaps = 58/273 (21%)
Query: 27 LEVFCN-WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGK 85
LE N W +M+ Y+ LG EE + L++ M G++ + ACS L R G
Sbjct: 613 LESSANCWNAMLAAYSQLGLPEEGIRLYWEMSSTGIKANEGTFAGALAACSMLGAVREGY 672
Query: 86 DVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRY 145
+++ + S ++ + +K L+ ++ KC R++ +FE++ D
Sbjct: 673 RIHEQVSSSRYSSDLSLKTALVHMYAKCNRVDAAFHVFEQLQPD---------------- 716
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
+V+WNAM+A YA G+ L +M ++P + V
Sbjct: 717 ---------------VVAWNAMIAAYAQNGYAWHALELYSKMLHGYKPLEPTFLC---VF 758
Query: 206 AACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVR 265
AC H L C + S+ T ++ +++ R
Sbjct: 759 LACG------------------HAGLVDECKWYF--QSMIEDRITPTFDHYSCVVTVLSR 798
Query: 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+G++ +A DLL + P +V S+L AC
Sbjct: 799 AGKLEEAEDLLHSM---PFNPGSVGWTSLLGAC 828
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 167/343 (48%), Gaps = 27/343 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W M+ YN + +++ LF M +GV P+ + ACS+LKD GK +Y Y+
Sbjct: 176 WNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYIN 235
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHC 151
E N ++ L+D+F CG M+ +F+ M ++D + S++ +A + ++
Sbjct: 236 GGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARK 295
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I ++D VSW AM+ GY E L EM+M ++++P+ ++ +L ACA +
Sbjct: 296 YFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQM--SNVKPDEFTMVSILTACAHL 353
Query: 212 KGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSII 260
++LG+ + Y+ ++ I T CG V + VF ++ +D W ++I
Sbjct: 354 GALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMI 413
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA------------ALPQGL 308
+G +AL + ++I A++ P+ +T + VL AC + G+
Sbjct: 414 VGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGI 473
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMI 350
+ ++D+ GR G ++++ ++ V MP K N + W ++
Sbjct: 474 KPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLL 516
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/371 (26%), Positives = 171/371 (46%), Gaps = 85/371 (22%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y+ + + + V+++ LM+ ++PD F P + K + + GK + ++ +
Sbjct: 75 WNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAV 134
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F D + V + I ++ CR + ++
Sbjct: 135 KHGF------------------------------DSNLFVQKAFIHMFSLCRLVDLARKV 164
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++V+WN ML+GY ++ L EME + + PN+++L +L+AC+++K
Sbjct: 165 FDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEME--KRGVSPNSVTLVLMLSACSKLK 222
Query: 213 GVKLGKAIHGY-----VLRH------HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ GK I+ Y V R+ I + ACG + + SVF+ + RDV+ W SI++
Sbjct: 223 DLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVT 282
Query: 262 AFVRSGQV-------------------------------VDALDLLRDVIVANVKPNTVT 290
F GQ+ ++AL L R++ ++NVKP+ T
Sbjct: 283 GFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFT 342
Query: 291 IVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+VS+L AC L AL G + +FV NALIDMY +CG + K++K+F M
Sbjct: 343 MVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMH 402
Query: 340 HKNLVSWNVMI 350
HK+ +W MI
Sbjct: 403 HKDKFTWTAMI 413
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 105/224 (46%), Gaps = 24/224 (10%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I Q L WN M+ GY+ + ++ + M+ ++++P+ + +L +
Sbjct: 64 FDAIPQPTLFIWNTMIKGYSRINHPQNGVSMY--LLMLASNIKPDRFTFPFLLKGFTRNM 121
Query: 213 GVKLGKAIHGYVLRH-----------HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ GK + + ++H IH+ + C V + VF+ +VV WN ++S
Sbjct: 122 ALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLS 181
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------- 314
+ R Q + L ++ V PN+VT+V +L AC KL L G ++
Sbjct: 182 GYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVER 241
Query: 315 ----WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
N LIDM+ CG + +++ +F M +++++SW +++ +
Sbjct: 242 NLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFA 285
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 113/270 (41%), Gaps = 56/270 (20%)
Query: 30 FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
+ +WT+M+ Y + + E + LF M V+PD F + AC+ L +G+ V
Sbjct: 305 YVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKT 364
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
Y+ + N+ + D V N+LID Y KC + +
Sbjct: 365 YI-----DKNS-------------------------IKNDTFVGNALIDMYFKCGNVGKA 394
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F ++ KD +W AM+ G A+ G EE + M I+ + P+ I+ GVL AC
Sbjct: 395 KKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNM--IEASITPDEITYIGVLCACT 452
Query: 210 QVKGVKLGKAIH-GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
V+ G++ ++H I +V + ++ R+G+
Sbjct: 453 HAGMVEKGQSFFISMTMQHGI--------------------KPNVTHYGCMVDLLGRAGR 492
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ +A ++ ++ VKPN++ S+L AC
Sbjct: 493 LEEAHEV---IVNMPVKPNSIVWGSLLGAC 519
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 11/129 (8%)
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
G +I + VF+ + + +WN++I + R + + + ++ +N+KP+ T +L
Sbjct: 55 GKMIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLL 114
Query: 296 PACLKLAAL-----------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLV 344
+ AL G + FV A I M+ C + +RK+F + +V
Sbjct: 115 KGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVV 174
Query: 345 SWNVMISVY 353
+WN+M+S Y
Sbjct: 175 TWNIMLSGY 183
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 96/395 (24%), Positives = 180/395 (45%), Gaps = 52/395 (13%)
Query: 6 QVHAHLIVCGVELCAFLGSQLL----------------EVFCN--------WTSMMGMYN 41
Q HAH++ G+ F S+L+ +F W +++ Y
Sbjct: 25 QAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYA 84
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
E + +F+ M+ V PD + K+C G+ ++ +++ +
Sbjct: 85 NSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLF 144
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCK-FSKIKQK 159
++ L+ L+ CG +E L + M ++D + N+L+ YA+ ++++ + F + K
Sbjct: 145 IQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELASRRVFGETPVK 204
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
++VSWNAM+ GY+ G EV L ++M+ ++P+ +L VL+ACA V + G+
Sbjct: 205 NVVSWNAMITGYSHAGRFSEVLVLFEDMQ--HAGVKPDNCTLVSVLSACAHVGALSQGEW 262
Query: 220 IHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H Y+ ++ I + + CG + + VFN +D+ WNSIIS G
Sbjct: 263 VHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGS 322
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WN 316
AL + +++V KPN VT V VL AC + L +G + + +
Sbjct: 323 GQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYG 382
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNL-VSWNVMI 350
++D+ GR G ++++ ++ MP K V W ++
Sbjct: 383 CMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLL 417
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 119/265 (44%), Gaps = 56/265 (21%)
Query: 141 AKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTIS 200
+ + + +H FS+I + WN ++ YA E + +M + + P+ +
Sbjct: 53 SHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQM--LHASVLPDKYT 110
Query: 201 LSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFV----------- 238
+ L +C GV+ G+ IHG+VL+ IHL +CG +
Sbjct: 111 FTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRML 170
Query: 239 ---------------------ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLR 277
+ S VF + ++VV WN++I+ + +G+ + L L
Sbjct: 171 ERDVVSWNALLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFE 230
Query: 278 DVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCG 326
D+ A VKP+ T+VSVL AC + AL QG + FV AL+DMY +CG
Sbjct: 231 DMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCG 290
Query: 327 AIQKSRKIFVLMPHKNLVSWNVMIS 351
+I+K+ ++F K++ +WN +IS
Sbjct: 291 SIEKALEVFNSCLRKDISTWNSIIS 315
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 11/123 (8%)
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
S+F+++ + +WN+II A+ S AL + ++ A+V P+ T L +C +
Sbjct: 63 SIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFS 122
Query: 303 A-----------LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
L GLG F+ N LI +Y CG I+ +R + M +++VSWN ++S
Sbjct: 123 GVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLS 182
Query: 352 VYG 354
Y
Sbjct: 183 AYA 185
>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 933
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 100/397 (25%), Positives = 180/397 (45%), Gaps = 75/397 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ +G QVH ++V G E F+ + L+ ++ +W ++
Sbjct: 173 LRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSC 232
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y + + E V LFY M+ G++P+ F + AC+ L+D GK ++ Y+I + +
Sbjct: 233 YVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGY--- 289
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D D N+L+D YAK L + F KIKQ
Sbjct: 290 ---------------------------DWDPFSANALVDMYAKVGDLADAISVFEKIKQP 322
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSWNA++AG L E+ LL +M+ ++ + PN +LS L ACA + +LG+
Sbjct: 323 DIVSWNAVIAGCVLHEHHEQALELLGQMK--RSGICPNIFTLSSALKACAGMGLKELGRQ 380
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H +++ + + + C + + FN L +D++ WN+IIS + + +
Sbjct: 381 LHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWE 440
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNA 317
++AL L ++ + N T+ ++L + L ++ G + +V N+
Sbjct: 441 DMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNS 500
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
LID YG+C ++ + +IF +LVS+ MI+ Y
Sbjct: 501 LIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYA 537
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/393 (25%), Positives = 178/393 (45%), Gaps = 75/393 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G+Q+HAH+ G+ + + L+ ++ +W++++ Y
Sbjct: 75 GLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQ 134
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G + F+ M GV+ + F V KACS +KD R+GK V+ ++ FEG+ V
Sbjct: 135 NGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFV 194
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L+ ++ KC +FL + L F +I ++++V
Sbjct: 195 ANTLVVMYAKC--------------DEFLDSKRL----------------FDEIPERNVV 224
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SWNA+ + Y F E L EM+ + ++PN SLS ++ AC ++ GK IHG
Sbjct: 225 SWNALFSCYVQIDFCGEAVGLF--YEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHG 282
Query: 223 YVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
Y+++ + + G + + SVF ++ D+V WN++I+ V
Sbjct: 283 YLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQ 342
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQGLGTGSFVWNALID 320
AL+LL + + + PN T+ S L AC L + + + + FV L+D
Sbjct: 343 ALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVD 402
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
MY +C ++ +R F L+P K+L++WN +IS Y
Sbjct: 403 MYSKCDLLEDARMAFNLLPEKDLIAWNAIISGY 435
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/341 (24%), Positives = 162/341 (47%), Gaps = 54/341 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ + ++E+ + L M G+ P+ F KAC+ + +G+ ++ +
Sbjct: 326 SWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSL 385
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + E DLF+ G L+D Y+KC L+ +
Sbjct: 386 MKMDMES---------DLFVSVG---------------------LVDMYSKCDLLEDARM 415
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ + +KDL++WNA+++GY+ + E++ L +EM + + N +LS +L + A +
Sbjct: 416 AFNLLPEKDLIAWNAIISGYS--QYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGL 473
Query: 212 KGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ V + + +HG YV+ I C V + +F + + D+V + S+I
Sbjct: 474 QVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMI 533
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGS- 312
+A+ + GQ +AL L ++ +KP+ S+L AC L+A QG L G
Sbjct: 534 TAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFV 593
Query: 313 ---FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
F N+L++MY +CG+I + + F + + +VSW+ MI
Sbjct: 594 LDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMI 634
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 91/394 (23%), Positives = 167/394 (42%), Gaps = 77/394 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMY 40
ELG Q+H+ L+ +E F+ L++++ W +++ Y
Sbjct: 376 ELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGY 435
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+ E ++LF M +G+ + + K+ + L+ V + V+
Sbjct: 436 SQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHG----------- 484
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
L +K G D V NSLID Y KC +++ + F + D
Sbjct: 485 --------LSVKSG-----------FHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGD 525
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
LVS+ +M+ YA G EE L +EM +++P+ S +L ACA + + GK +
Sbjct: 526 LVSFTSMITAYAQYGQGEEALKLF--LEMQDMELKPDRFVCSSLLNACANLSAFEQGKQL 583
Query: 221 HGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H ++L++ +++ CG + + F++L+ R +V W+++I + G
Sbjct: 584 HVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHG 643
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPAC----------LKLAALPQGLGTGSFV--WNA 317
AL L ++ V PN +T+VSVL AC L ++ + G +
Sbjct: 644 RQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYAC 703
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMI 350
+ID+ GR G I ++ ++ MP + N W ++
Sbjct: 704 MIDLLGRAGKINEAVELVNKMPFEANASVWGALL 737
>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
Length = 698
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 92/376 (24%), Positives = 165/376 (43%), Gaps = 58/376 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT M+ N G + E + M G P F V +C+ + VG+ V+ ++
Sbjct: 25 SWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFV 84
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSH 150
+ + V +L+++ KCG E + +FE M + + N+++ + ++
Sbjct: 85 VKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAE 144
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + + +VSWNAM+AGY G + L M + ++ M P+ +++ VL+ACA
Sbjct: 145 SLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRM-LHESSMAPDEFTITSVLSACAN 203
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVICSC---------------------------- 242
+ V++GK +H Y+LR + ++ + S
Sbjct: 204 LGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFT 263
Query: 243 ----------------SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286
+F ++ RDVV W ++I + ++G+ +A+DL R +I +P
Sbjct: 264 ALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEP 323
Query: 287 NTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIF 335
N+ T+ +VL C LA L G L S V NA+I MY R G+ +R++F
Sbjct: 324 NSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMF 383
Query: 336 -VLMPHKNLVSWNVMI 350
+ K ++W MI
Sbjct: 384 DQVCWRKETITWTSMI 399
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 165/350 (47%), Gaps = 31/350 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W +M+ YN G + + LF M+ + + PD F V AC+ L + R+GK V+ Y
Sbjct: 157 SWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAY 216
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFE---EMDQDFLVNNSLIDFYAKCRYLK 147
++ + N+ V L+ + K G +E + + E D + + +L++ Y K ++
Sbjct: 217 ILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDME 276
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
+ F + +D+V+W AM+ GY G +E +L MI +PN+ +L+ VL+
Sbjct: 277 SAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLF--RSMITCGPEPNSYTLAAVLSV 334
Query: 208 CAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSC-----------SVFNQLSTR-DVVV 255
CA + + GK IH +R + S++ I + +F+Q+ R + +
Sbjct: 335 CASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETIT 394
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW 315
W S+I A + GQ +A+ L +++ A V+P+ +T V VL AC + +G +
Sbjct: 395 WTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIK 454
Query: 316 NA------------LIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
N ++D+ R G ++++ MP + ++W ++S
Sbjct: 455 NEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSA 504
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 116/272 (42%), Gaps = 60/272 (22%)
Query: 139 FYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGG-FREEVTNLLDEMEMIQTDMQPN 197
+AK L + F+++ ++D VSW M+ G G F E + LLD M P
Sbjct: 1 MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLD---MTADGFTPT 57
Query: 198 TISLSGVLAACAQVKGVKLGKAIHGYVLR------------------------------- 226
+L+ VL++CA + +G+ +H +V++
Sbjct: 58 QFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFE 117
Query: 227 -----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDL 275
+ L+T G + + S+F + R +V WN++I+ + ++G AL L
Sbjct: 118 RMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKL 177
Query: 276 L-RDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYG 323
R + +++ P+ TI SVL AC L + G + S V NALI Y
Sbjct: 178 FSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYA 237
Query: 324 RCGAIQKSRKIF--VLMPHKNLVSWNVMISVY 353
+ G+++ +R+I + N++S+ ++ Y
Sbjct: 238 KSGSVENARRIMDQSMETDLNVISFTALLEGY 269
>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 939
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 161/345 (46%), Gaps = 56/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M+ Y LG +E V LF MID G PD +AC + D +VGK V+ Y+
Sbjct: 290 TWNTMICGYAQLGRHEASVKLFMDMID-GFVPDMLSITSTIRACGQSGDLQVGKFVHKYL 348
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I FE C D + N LID YAKC L +
Sbjct: 349 IGSGFE---------------C---------------DTVACNILIDMYAKCGDLLAAQE 378
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K KD V+WN+++ GY G+ +E L+ +M++ + +P++++ +L+ +Q+
Sbjct: 379 VFDTTKCKDSVTWNSLINGYTQSGYYKEG---LESFKMMKMERKPDSVTFVLLLSIFSQL 435
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ G+ IH V++ + + CG + VF+ +S D++ WN++I
Sbjct: 436 ADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVI 495
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW----- 315
++ V ++ ++ + P+ T++ +LP C LA QG +++
Sbjct: 496 ASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFE 555
Query: 316 ------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
NALI+MY +CG+++ K+F M K++V+W +IS +G
Sbjct: 556 SNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFG 600
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/394 (24%), Positives = 174/394 (44%), Gaps = 77/394 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ELG VH H + G E ++G+ L++++ +W S++
Sbjct: 137 LELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISG 196
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G++E+ +++++ G+ PD F V AC L + G V+ + I G
Sbjct: 197 YCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAG- 255
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D ++ N L+ Y K L+ + FSK+ K
Sbjct: 256 -----------------------------DVIIGNGLLSMYFKFERLREARRVFSKMAVK 286
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D V+WN M+ GYA G E L M+MI P+ +S++ + AC Q +++GK
Sbjct: 287 DSVTWNTMICGYAQLGRHEASVKLF--MDMID-GFVPDMLSITSTIRACGQSGDLQVGKF 343
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H Y++ I + CG ++ + VF+ +D V WNS+I+ + +SG
Sbjct: 344 VHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGY 403
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-----------TGSFVWNA 317
+ L+ + ++ KP++VT V +L +LA + QG G + N+
Sbjct: 404 YKEGLESFK-MMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNS 462
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
L+D+Y +CG + K+F M +++SWN +I+
Sbjct: 463 LLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIA 496
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 163/343 (47%), Gaps = 55/343 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ G + + + + M +K ++PD F P V +C+ + D +G V+++ +
Sbjct: 89 WNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAM 148
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ FE DL+I N+LID Y++ L +
Sbjct: 149 EMGFES---------DLYI---------------------GNALIDMYSRFVDLDNARYV 178
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ +D VSWN++++GY GF E+ ++ + M T M P+ ++S VL AC +
Sbjct: 179 FEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRM--TGMVPDCFTMSSVLLACGSLM 236
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSC-----------SVFNQLSTRDVVVWNSIIS 261
VK G A+HG + + I G + S VF++++ +D V WN++I
Sbjct: 237 AVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMIC 296
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTG--- 311
+ + G+ ++ L D+I V P+ ++I S + AC + L G +G+G
Sbjct: 297 GYAQLGRHEASVKLFMDMIDGFV-PDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFEC 355
Query: 312 -SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ N LIDMY +CG + ++++F K+ V+WN +I+ Y
Sbjct: 356 DTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGY 398
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 91/398 (22%), Positives = 161/398 (40%), Gaps = 80/398 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLL--------------EVF--------CNWTSMMG 38
+++G VH +LI G E C + +L EVF W S++
Sbjct: 338 LQVGKFVHKYLIGSGFE-CDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLIN 396
Query: 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
Y GYY+E + F +M +PD + S+L D G+ ++ +I FE
Sbjct: 397 GYTQSGYYKEGLESFKMM-KMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEA 455
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
+ ++ NSL+D YAKC + FS +
Sbjct: 456 ------------------------------ELIIGNSLLDVYAKCGEMDDLLKVFSYMSA 485
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
D++SWN ++A F + EM + P+ ++ G+L C+ + + GK
Sbjct: 486 HDIISWNTVIASSV--HFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGK 543
Query: 219 AIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
IHGY+ + I + + CG + VF + +DVV W ++ISAF G
Sbjct: 544 EIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYG 603
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------W 315
+ AL +D+ ++ V P++V ++ + AC + +GL + +
Sbjct: 604 EGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHY 663
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMISV 352
++D+ R G + ++ + + MP K S W ++S
Sbjct: 664 ACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSA 701
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 116/260 (44%), Gaps = 29/260 (11%)
Query: 118 ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS-WNAMLAGYALGGF 176
ITSGL + + LI YA+ + S F I + V WN+++ G
Sbjct: 46 ITSGL----SLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGL 101
Query: 177 REEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACG 236
+ EM + +QP+ + V+ +CA++ ++LG +H + + G
Sbjct: 102 FTQALGYYTEMR--EKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIG 159
Query: 237 ---------FVICSCS--VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK 285
FV + VF ++S RD V WNS+IS + +G DALD+ + +
Sbjct: 160 NALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMV 219
Query: 286 PNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKI 334
P+ T+ SVL AC L A+ +G+ + N L+ MY + ++++R++
Sbjct: 220 PDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRV 279
Query: 335 FVLMPHKNLVSWNVMISVYG 354
F M K+ V+WN MI Y
Sbjct: 280 FSKMAVKDSVTWNTMICGYA 299
>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 88/361 (24%), Positives = 174/361 (48%), Gaps = 57/361 (15%)
Query: 15 GVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVR-PDHFVCPKVYK 73
G F +++L+V W SM+ + + + M+++ PD F P + K
Sbjct: 29 GYAYSVFAHTRVLDVL-TWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLK 87
Query: 74 ACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN 133
C+ L +++VGK ++ ++ + ++ LL+++ CG ++ LFE M
Sbjct: 88 GCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMG------ 141
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
++ V W +M++GY E L +ME +
Sbjct: 142 ------------------------HRNKVVWTSMISGYMKNHCPNEALLLYKKME--EDG 175
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSC 242
P+ ++++ +++ACA++K + +G +H ++ +++ CG + +
Sbjct: 176 FSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTAR 235
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVLPACLKL 301
VF+QLS +DV W+++I +V++ + +AL L R+V +N++PN VTI++V+ AC +L
Sbjct: 236 QVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQL 295
Query: 302 AALPQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
L G ++ N+LIDM+ +CG I +++IF M +K+L+SWN M+
Sbjct: 296 GDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMV 355
Query: 351 S 351
+
Sbjct: 356 N 356
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 151/332 (45%), Gaps = 58/332 (17%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WTSM+ Y E + L+ M + G PD + AC+ELKD VG ++ ++
Sbjct: 148 WTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHI- 206
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDF--LVNNSLIDFYAKCRYLKVSH 150
EMD ++ ++L++ YAKC LK +
Sbjct: 207 -------------------------------REMDMKICAVLGSALVNMYAKCGDLKTAR 235
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ KD+ +W+A++ GY E L E+ ++M+PN +++ V++ACAQ
Sbjct: 236 QVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAG-GSNMRPNEVTILAVISACAQ 294
Query: 211 VKGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ ++ G+ +H Y+ R H + L+ + CG + + +F+ +S +D++ WNS+
Sbjct: 295 LGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSM 354
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------G 307
++ G +AL + +++P+ +T + VL AC + + G
Sbjct: 355 VNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYG 414
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+ S + ++D+ R G + ++R+ +MP
Sbjct: 415 VRLKSEHYGCMVDLLCRAGLLAEAREFIRVMP 446
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 112/223 (50%), Gaps = 23/223 (10%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+ + D+++WN+ML + EM + ++ P+ + +L CA +
Sbjct: 35 FAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEM-LERSRNVPDRFTFPSLLKGCALLL 93
Query: 213 GVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
K+GK +HG V+++ +H + ACG + + +F ++ R+ VVW S+IS
Sbjct: 94 EFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMIS 153
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW------ 315
++++ +AL L + + P+ VT+ +++ AC +L L G+ S +
Sbjct: 154 GYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKI 213
Query: 316 -----NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+AL++MY +CG ++ +R++F + K++ +W+ +I Y
Sbjct: 214 CAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGY 256
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 106/241 (43%), Gaps = 56/241 (23%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYN 41
+G+++H+H+ +++CA LGS L+ ++ W++++ Y
Sbjct: 198 VGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYV 257
Query: 42 VLGYYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
E + LF + +RP+ V AC++L D G+ V+DY+ + +
Sbjct: 258 KNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSV 317
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
+ L+D+F KCG ++ +F+ M KD
Sbjct: 318 SLNNSLIDMFSKCGDIDAAKRIFDSMS------------------------------YKD 347
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQ-TDMQPNTISLSGVLAACAQVKGVKLGKA 219
L+SWN+M+ G AL G E L + ++Q TD+QP+ I+ GVL AC+ V+ GK
Sbjct: 348 LISWNSMVNGLALHGLGREA---LAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKK 404
Query: 220 I 220
+
Sbjct: 405 L 405
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK-PNTVTIVSVLPACLKL 301
SVF DV+ WNS++ AFV S AL +++ + P+ T S+L C L
Sbjct: 33 SVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALL 92
Query: 302 AALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
G L + ++ L++MY CG ++ +R +F M H+N V W MI
Sbjct: 93 LEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMI 152
Query: 351 SVY 353
S Y
Sbjct: 153 SGY 155
>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g22690-like [Glycine max]
Length = 836
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 169/334 (50%), Gaps = 54/334 (16%)
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G ++ + L+ M+ G+ PD + P + ACS++ G V+ ++ + EG
Sbjct: 105 YASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEG- 163
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D V+NSLI FYA+C + + F + ++
Sbjct: 164 -----------------------------DIFVSNSLIHFYAECGKVDLGRKLFDGMLER 194
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
++VSW +++ GY+ +E +L +M + ++PN +++ V++ACA++K ++LGK
Sbjct: 195 NVVSWTSLINGYSGRDLSKEAVSLF--FQMGEAGVEPNPVTMVCVISACAKLKDLELGKK 252
Query: 220 IHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+ Y+ + LST CG + + +F++ + +++V++N+I+S +V
Sbjct: 253 VCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEW 312
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-------W----NA 317
D L +L +++ +P+ VT++S + AC +L L G + ++V W NA
Sbjct: 313 ASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNA 372
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+IDMY +CG + + K+F MP+K +V+WN +I+
Sbjct: 373 IIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIA 406
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 101/423 (23%), Positives = 181/423 (42%), Gaps = 106/423 (25%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G+QVH ++ G+E F+ + L+ + +WTS++ Y+
Sbjct: 149 GVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSG 208
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+E V+LF+ M + GV P+ V AC++LKD +GK V Y+ + E + +
Sbjct: 209 RDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIM 268
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L+D+++KCG + +F+E K+LV
Sbjct: 269 VNALVDMYMKCGDICAARQIFDE------------------------------CANKNLV 298
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+N +++ Y + +V +LD EM+Q +P+ +++ +AACAQ+ + +GK+ H
Sbjct: 299 MYNTIMSNYVHHEWASDVLVILD--EMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHA 356
Query: 223 YVLRHHI----HLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV-- 269
YVLR+ + ++S A CG +C VF + + VV WNS+I+ VR G +
Sbjct: 357 YVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMEL 416
Query: 270 -----------------------------VDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+A++L R++ + + VT+V + AC
Sbjct: 417 AWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGY 476
Query: 301 LAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L AL +++ AL+DM+ RCG + +F M +++ +W
Sbjct: 477 LGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAA 536
Query: 350 ISV 352
I V
Sbjct: 537 IGV 539
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 95/398 (23%), Positives = 181/398 (45%), Gaps = 48/398 (12%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+ELG +V +++ G+EL + + L++++ + ++M
Sbjct: 247 LELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSN 306
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y + +++ + M+ KG RPD AC++L D VGK + Y++ EG
Sbjct: 307 YVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGW 366
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKIKQ 158
+ ++D+++KCG+ E +FE M +V NSLI + ++++ F ++ +
Sbjct: 367 DNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLE 426
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+DLVSWN M+ EE L EM+ + + +++ G+ +AC + + L K
Sbjct: 427 RDLVSWNTMIGALVQVSMFEEAIELFREMQ--NQGIPGDRVTMVGIASACGYLGALDLAK 484
Query: 219 AIHGYVLRHHIH----LSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
+ Y+ ++ IH L TA CG + VF ++ RDV W + I G
Sbjct: 485 WVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEG 544
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL----------GTGSFV--W 315
A++L +++ VKP+ V V++L AC ++ QG G + +
Sbjct: 545 NTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHY 604
Query: 316 NALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
++D+ GR G ++++ + MP N V W +++
Sbjct: 605 GCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAA 642
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 108/215 (50%), Gaps = 24/215 (11%)
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
L +N ++ GYA G ++ +L ++M+ + P+ + +L+AC+++ + G +
Sbjct: 95 LFMYNCLIRGYASAGLGDQA--ILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQV 152
Query: 221 HGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
HG VL+ IH CG V +F+ + R+VV W S+I+ +
Sbjct: 153 HGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLS 212
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW-----------NAL 318
+A+ L + A V+PN VT+V V+ AC KL L G S++ NAL
Sbjct: 213 KEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNAL 272
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+DMY +CG I +R+IF +KNLV +N ++S Y
Sbjct: 273 VDMYMKCGDICAARQIFDECANKNLVMYNTIMSNY 307
>gi|347954474|gb|AEP33737.1| chlororespiratory reduction 21 [Nasturtium officinale]
Length = 826
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 168/345 (48%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++G+ +G EE + F M+ + PD+FV P V KAC L+ R G+ V+ Y+
Sbjct: 138 SWAAIIGVKCRIGLCEEALMGFVEMLQNEIFPDNFVVPNVCKACGALQWSRFGRGVHGYV 197
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ SGL + + V +SL D Y KC L +
Sbjct: 198 VK--------------------------SGLHDCV----FVASSLADMYGKCGVLDDARK 227
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I ++++V+WNA++ GY G EE LL +M + ++P +++S L+A A +
Sbjct: 228 VFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMR--KEGIEPTRVTVSTCLSASANM 285
Query: 212 KGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSII 260
G++ GK H + + + L G + + +F+++ +DVV WN +I
Sbjct: 286 DGIEEGKQSHAIAIVNGLELDNILGTSNLNFYCKVGLIEYAEMIFDRMIEKDVVTWNLLI 345
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
S +V+ G V DA+ + + + + N+K + VT+ +++ A + L G
Sbjct: 346 SGYVQQGLVEDAIHMCQLMRLENLKYDCVTLSTLMSAAARTQNLKLGKEVQCYCIRHSFA 405
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + + +DMY CG+I ++K+F + K+L+ WN ++SVY
Sbjct: 406 SDIVLASTAVDMYANCGSIIDAKKVFDSVLAKDLILWNTLLSVYA 450
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 147/305 (48%), Gaps = 44/305 (14%)
Query: 77 ELKDYRVGKDVYDYMIS-IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNS 135
+ + R+G ++Y ++ +E + C + + +K G DF N
Sbjct: 60 DFRKLRIGPEIYGEILQGCVYERDLCTGKQIHARILKNG--------------DFYAKNE 105
Query: 136 LID-----FYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
I+ FYAKC + S FSK++ +++ SW A++ G EE L+ +EM+
Sbjct: 106 YIETKLVIFYAKCDAFEASEVLFSKLRVRNVYSWAAIIGVKCRIGLCEEA--LMGFVEML 163
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVI 239
Q ++ P+ + V AC ++ + G+ +HGYV++ +H + CG +
Sbjct: 164 QNEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKSGLHDCVFVASSLADMYGKCGVLD 223
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ VF+++ R+VV WN+++ +V++G +A+ LL D+ ++P VT+ + L A
Sbjct: 224 DARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASA 283
Query: 300 KLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
+ + + GL + + + ++ Y + G I+ + IF M K++V+WN+
Sbjct: 284 NMDGIEEGKQSHAIAIVNGLELDNILGTSNLNFYCKVGLIEYAEMIFDRMIEKDVVTWNL 343
Query: 349 MISVY 353
+IS Y
Sbjct: 344 LISGY 348
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 94/427 (22%), Positives = 184/427 (43%), Gaps = 87/427 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q HA IV G+EL LG+ L +C W ++
Sbjct: 288 IEEGKQSHAIAIVNGLELDNILGTSNLNFYCKVGLIEYAEMIFDRMIEKDVVTWNLLISG 347
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G E+ +++ LM + ++ D + A + ++ ++GK+V Y I F +
Sbjct: 348 YVQQGLVEDAIHMCQLMRLENLKYDCVTLSTLMSAAARTQNLKLGKEVQCYCIRHSFASD 407
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEE-MDQDFLVNNSLIDFYAKC--------------- 143
+ +D++ CG + +F+ + +D ++ N+L+ YA+
Sbjct: 408 IVLASTAVDMYANCGSIIDAKKVFDSVLAKDLILWNTLLSVYAESGLSGEAFRLFYEMQL 467
Query: 144 ------------------RYLKVSHCK--FSKIKQK----DLVSWNAMLAGYALGGFREE 179
R +V+ K FS+++ +LVSW M+ G G EE
Sbjct: 468 ESVPPNAITWNLIILSFLRNGQVNEAKEIFSQMQSSGIFPNLVSWTTMMNGLVQNGCSEE 527
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST------ 233
L +M+ ++ ++PN S++ L+AC+ + + G+++HGY++R+ H S+
Sbjct: 528 AILFLRKMQ--ESGLRPNAFSITVALSACSNLASLHFGRSVHGYIIRNQQHSSSVLIETS 585
Query: 234 ------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
CG + + VF D+ ++N++ISA+ +G V +A+ L R + +KP+
Sbjct: 586 LVDMYAKCGDINKAEMVFRSKLCSDLPLYNAMISAYALNGNVKEAIALCRRLEDTGIKPD 645
Query: 288 TVTIVSVLPACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIF 335
+T S+L AC + Q + + + + ++D+ G K+ ++
Sbjct: 646 NITFTSLLSACNHAGDVSQAVEIFTDMVSKHGIKPCLEHYGLMVDILASAGETDKALRLI 705
Query: 336 VLMPHKN 342
MP+K+
Sbjct: 706 EEMPYKS 712
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/385 (22%), Positives = 165/385 (42%), Gaps = 92/385 (23%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYN 41
G VH +++ G+ C F+ S L +++ W ++M Y
Sbjct: 189 FGRGVHGYVVKSGLHDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYV 248
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G EE + L M +G+ P A + + GK +
Sbjct: 249 QNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANMDGIEEGKQSH------------- 295
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ I +GL + D ++ S ++FY K ++ + F ++ +KD+
Sbjct: 296 -------------AIAIVNGL----ELDNILGTSNLNFYCKVGLIEYAEMIFDRMIEKDV 338
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
V+WN +++GY G E+ ++ M + +++ + ++LS +++A A+ + +KLGK +
Sbjct: 339 VTWNLLISGYVQQGLVEDAIHMCQLMRL--ENLKYDCVTLSTLMSAAARTQNLKLGKEVQ 396
Query: 222 GYVLRHH-----IHLSTA------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y +RH + STA CG +I + VF+ + +D+++WN+++S + SG
Sbjct: 397 CYCIRHSFASDIVLASTAVDMYANCGSIIDAKKVFDSVLAKDLILWNTLLSVYAESGLSG 456
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQK 330
+A L ++ + +V PN +T WN +I + R G + +
Sbjct: 457 EAFRLFYEMQLESVPPNAIT------------------------WNLIILSFLRNGQVNE 492
Query: 331 SRKIFVLMPHK----NLVSWNVMIS 351
+++IF M NLVSW M++
Sbjct: 493 AKEIFSQMQSSGIFPNLVSWTTMMN 517
>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g35130, chloroplastic; Flags: Precursor
gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 804
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 162/343 (47%), Gaps = 56/343 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W M+ + G Y E V + M+ GV+ D F P V K+ + + GK ++ +I
Sbjct: 98 WNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAGISSLEEGKKIHAMVI 157
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ F + V L+ L++K G +FEEM
Sbjct: 158 KLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEM-------------------------- 191
Query: 153 FSKIKQKDLVSWNAMLAGY-ALG-GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
++D+VSWN+M++GY ALG GF ++L+ EM++ +P+ S L AC+
Sbjct: 192 ----PERDIVSWNSMISGYLALGDGF----SSLMLFKEMLKCGFKPDRFSTMSALGACSH 243
Query: 211 VKGVKLGKAIHGYVLRHHIH------------LSTACGFVICSCSVFNQLSTRDVVVWNS 258
V K+GK IH + +R I + + G V + +FN + R++V WN
Sbjct: 244 VYSPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNV 303
Query: 259 IISAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPACLKLA-------ALPQGLGT 310
+I + R+G+V DA + + N ++P+ +T +++LPA L A+ +G
Sbjct: 304 MIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASAILEGRTIHGYAMRRGFLP 363
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ ALIDMYG CG ++ + IF M KN++SWN +I+ Y
Sbjct: 364 HMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAY 406
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 109/399 (27%), Positives = 196/399 (49%), Gaps = 81/399 (20%)
Query: 1 MELGIQVHAHLIVCG----VELCAFLGSQLLEVFC-----------------NWTSMMGM 39
+E G ++HA +I G V +C L S +++ C +W SM+
Sbjct: 146 LEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISG 205
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y LG + LF M+ G +PD F ACS + ++GK+++ + +
Sbjct: 206 YLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAV------- 258
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK--FSKIK 157
R I +G D +V S++D Y+K Y +VS+ + F+ +
Sbjct: 259 ---------------RSRIETG-------DVMVMTSILDMYSK--YGEVSYAERIFNGMI 294
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
Q+++V+WN M+ YA G + +M Q +QP+ I+ +L A A ++G
Sbjct: 295 QRNIVAWNVMIGCYARNGRVTDAFLCFQKMSE-QNGLQPDVITSINLLPASAILEG---- 349
Query: 218 KAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
+ IHGY +R H+ L TA CG + + +F++++ ++V+ WNSII+A+V++
Sbjct: 350 RTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQN 409
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----W------ 315
G+ AL+L +++ +++ P++ TI S+LPA + +L +G +++ W
Sbjct: 410 GKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIIL 469
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
N+L+ MY CG ++ +RK F + K++VSWN +I Y
Sbjct: 470 NSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYA 508
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 109/232 (46%), Gaps = 25/232 (10%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
++ +LID Y +C LK + F ++ +K+++SWN+++A Y G L E+
Sbjct: 366 VLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQEL--W 423
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVI 239
+ + P++ +++ +L A A+ + G+ IH Y+++ +H+ CG +
Sbjct: 424 DSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLE 483
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC- 298
+ FN + +DVV WNSII A+ G ++ L ++I + V PN T S+L AC
Sbjct: 484 DARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACS 543
Query: 299 -----------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+ G+ G + ++D+ GR G +++ MP
Sbjct: 544 ISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEEMP 595
>gi|297838697|ref|XP_002887230.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
lyrata]
gi|297333071|gb|EFH63489.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
lyrata]
Length = 1347
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 157/323 (48%), Gaps = 54/323 (16%)
Query: 50 VNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDL 109
+ +F M+D GV PD V + C+EL R+ + V+
Sbjct: 745 LRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHG-------------------- 784
Query: 110 FIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLA 169
+IT +F D D + NSL+ Y+KC L S F KI +K+ VSW AM++
Sbjct: 785 -------QITRKMF---DFDETLCNSLLTMYSKCGDLLSSEKIFEKIAKKNAVSWTAMIS 834
Query: 170 GYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH- 228
Y G F E+ L EM+++ ++PN ++L +L++C ++ GK++HG+ +R
Sbjct: 835 SYNRGEFSEKA--LRSFSEMLKSGIEPNLVTLYSILSSCGLNGLIREGKSVHGFAIRREL 892
Query: 229 -----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLR 277
+ L CG + ++ + + R++V+WNS IS + G V++AL L R
Sbjct: 893 DPNYESLSPALVELYAECGRLGDCETILHVVGDRNIVLWNSHISLYAHRGMVIEALCLFR 952
Query: 278 DVIVANVKPNTVTIVSVLPACLKLAALPQGLG----------TGSFVWNALIDMYGRCGA 327
++ +KP++ T+ S++ AC + G + FV N++IDMY + G
Sbjct: 953 QMVTWRIKPDSFTLASIISACENTGLVRLGKQIHGHVIRTDVSDEFVQNSVIDMYSKSGF 1012
Query: 328 IQKSRKIFVLMPHKNLVSWNVMI 350
+ + +F + H+++V+WN M+
Sbjct: 1013 VNLACTVFDQIKHRSIVTWNSML 1035
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 166/343 (48%), Gaps = 51/343 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ YN + E+ + F M+ G+ P+ + +C R GK V+ +
Sbjct: 828 SWTAMISSYNRGEFSEKALRSFSEMLKSGIEPNLVTLYSILSSCGLNGLIREGKSVHGFA 887
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + + N +E + + +L++ YA+C L
Sbjct: 888 IRRELDPN-----------------------YESL------SPALVELYAECGRLGDCET 918
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+ +++V WN+ ++ YA G E L +M+ ++P++ +L+ +++AC
Sbjct: 919 ILHVVGDRNIVLWNSHISLYAHRGMVIEALCLF--RQMVTWRIKPDSFTLASIISACENT 976
Query: 212 KGVKLGKAIHGYVLRHH----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
V+LGK IHG+V+R I + + GFV +C+VF+Q+ R +V WNS++
Sbjct: 977 GLVRLGKQIHGHVIRTDVSDEFVQNSVIDMYSKSGFVNLACTVFDQIKHRSIVTWNSMLC 1036
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS--------- 312
F ++G ++A++L + + ++ N VT ++V+ AC + +L +G
Sbjct: 1037 GFSQNGNSLEAINLFDYMYHSCLEINKVTFLAVIQACSSIGSLEKGRWVHHKLIVCGIKD 1096
Query: 313 -FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
F ALIDMY +CG + + +F M ++++VSW+ MI+ YG
Sbjct: 1097 LFTDTALIDMYAKCGDLNTAETVFRAMSNRSIVSWSSMINAYG 1139
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 148/328 (45%), Gaps = 54/328 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S + +Y G E + LF M+ ++PD F + AC R+GK ++ ++I
Sbjct: 931 WNSHISLYAHRGMVIEALCLFRQMVTWRIKPDSFTLASIISACENTGLVRLGKQIHGHVI 990
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
R +++ D V NS+ID Y+K ++ ++
Sbjct: 991 ----------------------RTDVS---------DEFVQNSVIDMYSKSGFVNLACTV 1019
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F +IK + +V+WN+ML G++ G E NL D M + ++ N ++ V+ AC+ +
Sbjct: 1020 FDQIKHRSIVTWNSMLCGFSQNGNSLEAINLFDYM--YHSCLEINKVTFLAVIQACSSIG 1077
Query: 213 GVKLGKAIHGYVL----------RHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISA 262
++ G+ +H ++ I + CG + + +VF +S R +V W+S+I+A
Sbjct: 1078 SLEKGRWVHHKLIVCGIKDLFTDTALIDMYAKCGDLNTAETVFRAMSNRSIVSWSSMINA 1137
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTG 311
+ G++ A+ ++ + KPN V ++VL AC ++ + G+
Sbjct: 1138 YGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSACGHSGSVEEGKYYFNLMKLFGVSPN 1197
Query: 312 SFVWNALIDMYGRCGAIQKSRKIFVLMP 339
S + ID+ R G ++++ + MP
Sbjct: 1198 SEHFACFIDLLSRSGDLKEAYRTIKEMP 1225
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 90/403 (22%), Positives = 179/403 (44%), Gaps = 84/403 (20%)
Query: 1 MELGIQVHAHLIVCG------------VELCAFLGSQ-----LLEVFCNWTSMMGMYNVL 43
+ L Q+HAHL+V G +E AF+GS + E F S M Y VL
Sbjct: 572 LRLVSQLHAHLLVTGRLRRDPLPVTKLIESYAFMGSPDSSRLVFEAFPYPDSFM--YGVL 629
Query: 44 -------GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY-RVGKDVYDYMISIK 95
+ ++L++ ++ + + FV P V +AC+ +++ VG+ V+
Sbjct: 630 IKCNVWCHLLDAAIDLYHRLVSEKTQISKFVFPSVLRACAGSREHLSVGRKVH------- 682
Query: 96 FEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSK 155
GR+ I SG+ D D ++ SL+ Y + L + F
Sbjct: 683 ------------------GRI-IKSGV----DDDAVIETSLLCMYGQTGNLSDAEKVFDG 719
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEME-MIQTDMQPNTISLSGVLAACAQVKGV 214
+ +DLV+W+ +++ EV L + M+ ++P+ +++ V+ CA++ +
Sbjct: 720 MPVRDLVAWSTLVSSCLENC---EVLKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCL 776
Query: 215 KLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAF 263
++ +++HG + R + + + CG ++ S +F +++ ++ V W ++IS++
Sbjct: 777 RIARSVHGQITRKMFDFDETLCNSLLTMYSKCGDLLSSEKIFEKIAKKNAVSWTAMISSY 836
Query: 264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN------- 316
R AL +++ + ++PN VT+ S+L +C + +G F
Sbjct: 837 NRGEFSEKALRSFSEMLKSGIEPNLVTLYSILSSCGLNGLIREGKSVHGFAIRRELDPNY 896
Query: 317 -----ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
AL+++Y CG + I ++ +N+V WN IS+Y
Sbjct: 897 ESLSPALVELYAECGRLGDCETILHVVGDRNIVLWNSHISLYA 939
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 94/239 (39%), Gaps = 55/239 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ LG Q+H H+I V F+ + +++++ W SM+
Sbjct: 979 VRLGKQIHGHVIRTDVS-DEFVQNSVIDMYSKSGFVNLACTVFDQIKHRSIVTWNSMLCG 1037
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
++ G E +NLF M + + V +ACS + G+ V+ +I
Sbjct: 1038 FSQNGNSLEAINLFDYMYHSCLEINKVTFLAVIQACSSIGSLEKGRWVHHKLIV------ 1091
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
CG +D + +LID YAKC L + F + +
Sbjct: 1092 -------------CGI------------KDLFTDTALIDMYAKCGDLNTAETVFRAMSNR 1126
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+VSW++M+ Y + G + + +M+++ +PN + VL+AC V+ GK
Sbjct: 1127 SIVSWSSMINAYGMHGRIGSAISTFN--QMVESGTKPNEVVFMNVLSACGHSGSVEEGK 1183
>gi|296083752|emb|CBI23741.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 99/345 (28%), Positives = 162/345 (46%), Gaps = 27/345 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ Y Y E LF M V PD F + K SEL GK ++ I
Sbjct: 92 WNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSI 151
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHC 151
I F + V ++ ++ KCG E + +F+EM ++ N LI YA L V
Sbjct: 152 RIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNLVVGRR 211
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++K +++ SW AM+ GY G +E +L +M++I ++PN +SL VL AC+
Sbjct: 212 VFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVID-GIEPNRVSLVSVLPACSSF 270
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLST-RDVVVWNSI 259
G+ G+ IHG+ +R I + + CG + + VF S +D + W+S+
Sbjct: 271 SGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSM 330
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN--- 316
IS + G+ +A+ L ++ A ++P+ +T V +L AC + + +GL S V N
Sbjct: 331 ISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSSVINDYG 390
Query: 317 ---------ALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMIS 351
++DM GR G + + MP + S W ++S
Sbjct: 391 IEPTLEIFACIVDMLGRAGQLDPALDFIKAMPVEPGPSVWGALVS 435
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 130/284 (45%), Gaps = 57/284 (20%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
+ Q+ L+ LI YA C++ S F ++ K++ WN+++ GYA E L +
Sbjct: 54 LSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFN 113
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVI----CS 241
+M +D+ P+ +LS + +++ + GK+IHG +R T I C
Sbjct: 114 QM--CSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCK 171
Query: 242 CS--------------------------------------VFNQLSTRDVVVWNSIISAF 263
C VF+++ R+V W ++I+ +
Sbjct: 172 CGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNLVVGRRVFDRMKCRNVFSWTAMINGY 231
Query: 264 VRSGQVVDALDLLRDV-IVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF--------- 313
V +G +AL L RD+ ++ ++PN V++VSVLPAC + L G F
Sbjct: 232 VENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNE 291
Query: 314 --VWNALIDMYGRCGAIQKSRKIFVLMPH-KNLVSWNVMISVYG 354
+ NALIDMY +CG++ +R++F K+ +SW+ MIS YG
Sbjct: 292 VSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYG 335
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 22/165 (13%)
Query: 212 KGVKLGKAIHGYVLR----HHIHLSTACGFVICSCS-------VFNQLSTRDVVVWNSII 260
K +KL + H +L + L+T F C VF+ L ++V +WNS+I
Sbjct: 37 KSLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLI 96
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG----------- 309
+ + ++ +A L + ++V P+ T+ ++ +L AL G
Sbjct: 97 NGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFV 156
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + V N+++ MY +CG ++SRK+F M +N SWNV+I+ Y
Sbjct: 157 SDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYA 201
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY--- 88
+W+SM+ Y + G +E + L+ M+ G+RPD + ACS G ++Y
Sbjct: 326 SWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSSV 385
Query: 89 --DYMISIKFEGNACVKRPLLDLFIKCGRME 117
DY I E AC+ +D+ + G+++
Sbjct: 386 INDYGIEPTLEIFACI----VDMLGRAGQLD 412
>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 170/330 (51%), Gaps = 27/330 (8%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
+T+++ + G Y + + L+ M+ + PD+++ + KAC R G++V+ +
Sbjct: 115 YTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRAL 174
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ N V+ +++L+ KCG + +FEEM +D + + +I Y+ ++ +
Sbjct: 175 KLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAV 234
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ-TDMQPNTISLSGVLAACAQV 211
FS++++KD V W AM+ G+ EE+ L+ +Q +++PN ++ VL+AC+Q+
Sbjct: 235 FSRVRRKDTVCWTAMIDGFVRN---EEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQL 291
Query: 212 KGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSII 260
+++G+ +H Y+ + I L+ + CG + + +VF+++ RDV+ +N++I
Sbjct: 292 GALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMI 351
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK----------LAALPQGLGT 310
S +G+ A++L R +I ++P VT V VL AC ++ + G
Sbjct: 352 SGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGV 411
Query: 311 GSFV--WNALIDMYGRCGAIQKSRKIFVLM 338
+ + ++D+ GR G ++++ + M
Sbjct: 412 EPQIEHYGCMVDLLGRVGRLEEAYDLIRTM 441
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 121/280 (43%), Gaps = 62/280 (22%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
QD + L+ +KC + + F ++ + A++ G+ G N D +
Sbjct: 79 QDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSG------NYFDAI 132
Query: 188 E----MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-----------HHIHLS 232
+ M+ + P+ ++ +L AC ++ G+ +H L+ + L
Sbjct: 133 QLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELY 192
Query: 233 TACG------------------------------FVICSCSVFNQLSTRDVVVWNSIISA 262
CG V + +VF+++ +D V W ++I
Sbjct: 193 GKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDG 252
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS---------- 312
FVR+ ++ AL+ R + NV+PN TIV VL AC +L AL G S
Sbjct: 253 FVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELN 312
Query: 313 -FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
FV NALI+MY RCG+I +++ +F M ++++++N MIS
Sbjct: 313 LFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMIS 352
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 115/272 (42%), Gaps = 66/272 (24%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT+M+ + + F M + VRP+ F V ACS+L +G+ V+ YM
Sbjct: 246 WTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMR 305
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ E L+LF V N+LI+ Y++C + +
Sbjct: 306 KFEIE---------LNLF---------------------VGNALINMYSRCGSIDEAQTV 335
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++K +D++++N M++G ++ G + L MI ++P ++ GVL AC+
Sbjct: 336 FDEMKDRDVITYNTMISGLSMNGKSRQAIELF--RVMIGRRLRPTNVTFVGVLNACS--- 390
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVV------WNSIISAFVRS 266
HG G V +F+ + TRD V + ++ R
Sbjct: 391 --------HG-------------GLVDFGFKIFHSM-TRDYGVEPQIEHYGCMVDLLGRV 428
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
G++ +A DL+R + + P+ + + ++L AC
Sbjct: 429 GRLEEAYDLIRTM---KMTPDHIMLGTLLSAC 457
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 67/132 (50%), Gaps = 12/132 (9%)
Query: 233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
+ C + + +F +V ++ ++I FV SG DA+ L ++ ++ P+ +
Sbjct: 92 SKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMA 151
Query: 293 SVLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK 341
S+L AC AL + GL + V ++++YG+CG + +R++F MP +
Sbjct: 152 SILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMP-E 210
Query: 342 NLVSWNVMISVY 353
++V+ VMIS Y
Sbjct: 211 DVVASTVMISSY 222
>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g25060, mitochondrial-like [Vitis vinifera]
Length = 678
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 166/343 (48%), Gaps = 53/343 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y+ G E ++L++ M +GVRPD V KAC+ D R G++ + +
Sbjct: 73 WNAMIIAYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAV 132
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ + V +L+L+ KCG+ MD+ V
Sbjct: 133 DQGYGDDVFVGAAVLNLYAKCGK----------MDEAMRV-------------------- 162
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F K+ ++DLV W M+ G A G E ++ +M + ++ + + + G++ AC +
Sbjct: 163 FDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMH--KKRVEGDGVVMLGLIQACTTLG 220
Query: 213 GVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
K+G +IHGY++R I + G + + VF ++ ++V+ W+++IS
Sbjct: 221 HSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALIS 280
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------- 314
F ++G +AL L+ D+ KP++V++VSVL AC ++ L G ++
Sbjct: 281 GFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRRLHFD 340
Query: 315 ---WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
A+IDMY +CG++ +R +F + ++ +SWN +I+ YG
Sbjct: 341 CVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYG 383
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 91/342 (26%), Positives = 168/342 (49%), Gaps = 55/342 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT+M+ G E V+++ M K V D V + +AC+ L ++G ++ YMI
Sbjct: 174 WTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMI 233
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+++ D +V SL+D YAK +L+++ C
Sbjct: 234 R------------------------------KDIIMDVIVQTSLVDMYAKNGHLELASCV 263
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ K+++SW+A+++G+A GF L+ +M+ +P+++SL VL AC+QV
Sbjct: 264 FRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSF--GYKPDSVSLVSVLLACSQVG 321
Query: 213 GVKLGKAIHGYVLRH-H---------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISA 262
+KLGK++HGY++R H I + + CG + + +VF+Q+S RD + WN+II++
Sbjct: 322 FLKLGKSVHGYIVRRLHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIAS 381
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA----- 317
+ G +AL L + NVKP+ T S+L A + +G S + N
Sbjct: 382 YGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQP 441
Query: 318 -------LIDMYGRCGAIQKSRK-IFVLMPHKNLVSWNVMIS 351
++D+ R G ++++++ I ++ + W ++S
Sbjct: 442 SEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLS 483
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 119/244 (48%), Gaps = 24/244 (9%)
Query: 133 NNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQT 192
N LI YA+ +++ + F K Q + +WNAM+ Y+ G E +L M
Sbjct: 42 NAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMA--SE 99
Query: 193 DMQPNTISLSGVLAACAQVKGVKLGKAI------HGY-----VLRHHIHLSTACGFVICS 241
++P++ + + VL AC + ++ G+ GY V ++L CG + +
Sbjct: 100 GVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEA 159
Query: 242 CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
VF+++ RD+V W ++I+ ++GQ +A+D+ R + V+ + V ++ ++ AC L
Sbjct: 160 MRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTL 219
Query: 302 AALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
GL + V +L+DMY + G ++ + +F M +KN++SW+ +I
Sbjct: 220 GHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALI 279
Query: 351 SVYG 354
S +
Sbjct: 280 SGFA 283
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/268 (20%), Positives = 113/268 (42%), Gaps = 55/268 (20%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W++++ + G+ + L M G +PD V ACS++ ++GK V+ Y+
Sbjct: 274 SWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYI 333
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + + ++D++ KCG + +F++
Sbjct: 334 VR-RLHFDCVSSTAVIDMYSKCGSLSFARTVFDQ-------------------------- 366
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
I +D +SWNA++A Y + G EE +L ++M +T+++P+ + + +L+A +
Sbjct: 367 ----ISFRDSISWNAIIASYGIHGSGEEALSLF--LQMRETNVKPDHATFASLLSAFSHS 420
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V+ G+ F I Q S + + ++ R+G+V +
Sbjct: 421 GLVEKGRYW----------------FSIMVNEYKIQPSEKH---YACMVDLLSRAGRVEE 461
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACL 299
A +L+ +I +P V++L CL
Sbjct: 462 AQELIESMI---TEPGIAIWVALLSGCL 486
>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Cucumis sativus]
Length = 759
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 89/330 (26%), Positives = 161/330 (48%), Gaps = 21/330 (6%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M Y +E +NLF+ M+++G+ PD +CS + D + + +
Sbjct: 225 SWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMI 284
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM--DQDFLVNNSLIDFYAKCRYLKVS 149
N+ VK LLD+ K G +EI +F+E+ ++ + N +I Y + L ++
Sbjct: 285 DQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLA 344
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + ++D+VSWN+M+AGYA G L EM + D+QP+ ++++ VL+AC
Sbjct: 345 RELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEM-ISCMDIQPDEVTIASVLSACG 403
Query: 210 QVKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNS 258
+ +KL + V +I L + CG V + +F + TRDVV +N+
Sbjct: 404 HIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNT 463
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV---- 314
+IS F +G +A+ L+ + ++P+ VT + VL AC L +G +
Sbjct: 464 LISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQAPT 523
Query: 315 ---WNALIDMYGRCGAIQKSRKIFVLMPHK 341
+ ++D+ GR G + +++ + MP K
Sbjct: 524 VDHYACMVDLLGRAGELDEAKMLIQSMPMK 553
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/409 (21%), Positives = 180/409 (44%), Gaps = 94/409 (22%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
++ M+ Y+ +G + ++V+LF +RP FV + K + G + Y++
Sbjct: 68 YSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAG-----KSGNMFHAYVL 122
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN------------------- 133
+ + ++ +LD++ K G++++ LFE+M + L +
Sbjct: 123 KLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVV 182
Query: 134 -------------NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEV 180
S++ YAK L+ + F ++ ++ +VSWNAM + YA +E
Sbjct: 183 LFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEA 242
Query: 181 TNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS-------- 232
NL +M ++ + P+ + +++C+ + L +I + + HI L+
Sbjct: 243 LNLFHQM--LEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALL 300
Query: 233 -----------------------------------TACGFVICSCSVFNQLSTRDVVVWN 257
T G + + +F+ + RDVV WN
Sbjct: 301 DMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWN 360
Query: 258 SIISAFVRSGQVVDALDLLRDVIV-ANVKPNTVTIVSVLPACLKLAAL-----------P 305
S+I+ + ++G+ +++L +++I +++P+ VTI SVL AC + AL
Sbjct: 361 SMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVRE 420
Query: 306 QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + G +N+LI MY +CG++ + +IF M +++VS+N +IS +
Sbjct: 421 KNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFA 469
>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 674
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 159/342 (46%), Gaps = 34/342 (9%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W ++ Y G + F L+ G+ PD + P + +A + K + + + ++ +I
Sbjct: 44 WICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHAAVI 103
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ F + L++++ K S L E NN R L
Sbjct: 104 RLGFHFDLYTANALMNMYSKF--HPHLSPLHEFPQARHNHNNKYSVKIDSVRKL------ 155
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ +D+VSWN ++AG A G EE N++ EM + +++P++ +LS +L +
Sbjct: 156 FDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMG--KENLRPDSFTLSSILPIFTEHA 213
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
V GK IHGY +RH I + C V S F+ LS RD + WNSII+
Sbjct: 214 NVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIA 273
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGT 310
V++G+ L R ++ VKP V+ SV+PAC L AL G
Sbjct: 274 GCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDD 333
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIF--VLMPHKNLVSWNVMI 350
F+ ++L+DMY +CG I+ +R IF + M +++VSW +I
Sbjct: 334 NKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAII 375
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 144/325 (44%), Gaps = 57/325 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ G YEE +N+ M + +RPD F + +E + GK+++ Y
Sbjct: 166 SWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKEIHGYA 225
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I F+ + + L+D++ KC ++E+ S C
Sbjct: 226 IRHGFDKDVFIGSSLIDMYAKCTQVEL------------------------------SVC 255
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +D +SWN+++AG G ++ M++ ++P +S S V+ ACA +
Sbjct: 256 AFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFF--RRMLKEKVKPMQVSFSSVIPACAHL 313
Query: 212 KGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLS--TRDVVVWNS 258
+ LGK +H Y++R + + CG + + +FN++ RD+V W +
Sbjct: 314 TALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTA 373
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------ 306
II G +DA+ L +++V VKP V ++VL AC + +
Sbjct: 374 IIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDF 433
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKS 331
G+ G + A+ D+ GR G ++++
Sbjct: 434 GVAPGLEHYAAVADLLGRAGRLEEA 458
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 71/119 (59%), Gaps = 11/119 (9%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA- 302
+F+++ RDVV WN++I+ ++G +AL++++++ N++P++ T+ S+LP + A
Sbjct: 155 LFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHAN 214
Query: 303 ----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
A+ G F+ ++LIDMY +C ++ S F L+ +++ +SWN +I+
Sbjct: 215 VTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIA 273
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 100/235 (42%), Gaps = 51/235 (21%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G ++H + I G + F+GS L++++ +W S++
Sbjct: 218 GKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQ 277
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G +++ + F M+ + V+P V AC+ L +GK ++ Y+I + F+ N +
Sbjct: 278 NGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFI 337
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
LLD++ KCG +++ +F K+ C +D+V
Sbjct: 338 ASSLLDMYAKCGNIKMARYIFN----------------------KIEMC------DRDMV 369
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
SW A++ G A+ G + +L + EM+ ++P ++ VL AC+ V G
Sbjct: 370 SWTAIIMGCAMHGHALDAVSLFE--EMLVDGVKPCYVAFMAVLTACSHAGLVDEG 422
>gi|226530385|ref|NP_001145846.1| CRR4 [Zea mays]
gi|219884683|gb|ACL52716.1| unknown [Zea mays]
gi|414878658|tpg|DAA55789.1| TPA: CRR4 [Zea mays]
Length = 601
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 162/330 (49%), Gaps = 24/330 (7%)
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
L ++E++ + +G P V K+C+ G + + + G+ V
Sbjct: 56 LSLHQELIEAVSSLHRRGGAIPSGCIPLVLKSCALSAASCQGTQTHCHALVRGMLGDVFV 115
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ L+D + K G M+ FEEM +D + N LI Y++ ++ + F + +K
Sbjct: 116 QTALVDFYAKNGNMDSAVMAFEEMPIKDPIPMNCLITGYSRSGDVEEARRLFDSMPRKTS 175
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
SWN+M+A YA GG +E L D+M ++ PN I+++ V + CA+ ++ G+
Sbjct: 176 ASWNSMIACYAHGGEFQEALTLFDQM--LREGASPNAITITTVFSICAKTGDLETGRRAK 233
Query: 222 GYVLRHH-----IHLSTACGFVICSC-----SVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+V +H + +V C F+++ RDVV W+++I+ + +G+ +
Sbjct: 234 AWVSEEDLQNVIVHTALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHE 293
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNALID 320
+L+L + N KPN VT+V VL AC +L + G GS++ +ALID
Sbjct: 294 SLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGSALID 353
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
MY +CG + ++R +F M K +++WN MI
Sbjct: 354 MYTKCGHVARARDVFHRMEQKVVIAWNSMI 383
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 140/289 (48%), Gaps = 44/289 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y G ++E + LF M+ +G P+ V+ C++ D G+ +
Sbjct: 177 SWNSMIACYAHGGEFQEALTLFDQMLREGASPNAITITTVFSICAKTGDLETGRRAKAW- 235
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ EE Q+ +V+ +L++ Y KCR + +
Sbjct: 236 ------------------------------VSEEDLQNVIVHTALMEMYVKCRAIDEARR 265
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+F ++ ++D+V+W+ M+AGY+ G E L + M+ T+ +PN ++L GVL+ACAQ+
Sbjct: 266 EFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKA--TNCKPNEVTLVGVLSACAQL 323
Query: 212 KGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSII 260
+LG+ I Y+ + L+ T CG V + VF+++ + V+ WNS+I
Sbjct: 324 GSDELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHVARARDVFHRMEQKVVIAWNSMI 383
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG 309
+G DA+ L +++ V+PN +T +++L AC + +G+
Sbjct: 384 RGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTACTHAGLVDKGMA 432
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 135/321 (42%), Gaps = 63/321 (19%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W++M+ Y+ G E + LF M +P+ V AC++L +G+ + Y
Sbjct: 278 WSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGSY-- 335
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
I+ + +TS L ++LID Y KC ++ +
Sbjct: 336 ------------------IESQTLPLTSYL----------GSALIDMYTKCGHVARARDV 367
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F +++QK +++WN+M+ G AL GF E+ L EM + +QPN I+ +L AC
Sbjct: 368 FHRMEQKVVIAWNSMIRGLALNGFAEDAIALYGEM--VGDGVQPNEITFLALLTACTHAG 425
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
V G A + ++ H S C+C I+ +SG++ +A
Sbjct: 426 LVDKGMAFFQEMKKNKQHASPQVEH--CAC----------------IVDLLCKSGRLWEA 467
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPAC-----LKLAALPQGL-----GTGSFVWNALIDMY 322
+ D+ V+PN V ++L AC ++LA L G S ++ L ++Y
Sbjct: 468 YKFICDM---EVEPNAVIWTTLLSACRAHADVELAKLAAGKLVVLEPNSSSIYVLLSNIY 524
Query: 323 GRCGAIQKSRKIFVLMPHKNL 343
G R+I LM KNL
Sbjct: 525 ADAGLWGDVREIRDLMRSKNL 545
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
+F+ + + WNS+I+ + G+ +AL L ++ PN +TI +V C K
Sbjct: 166 LFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGASPNAITITTVFSICAKTGD 225
Query: 304 LPQGLGTGSFV----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L G ++V AL++MY +C AI ++R+ F MP +++V+W+ MI+ Y
Sbjct: 226 LETGRRAKAWVSEEDLQNVIVHTALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGY 285
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
N LI Y R G ++++R++F MP K SWN MI+ Y
Sbjct: 148 NCLITGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYA 186
>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 857
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 98/401 (24%), Positives = 177/401 (44%), Gaps = 83/401 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++LG+Q+H ++V GV+ + + LL ++ W M+
Sbjct: 255 IDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISG 314
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G EE + FY MI GV PD + + S+ ++ K ++ Y++
Sbjct: 315 YVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMR------ 368
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ D + ++LID Y KCR + ++ FS+
Sbjct: 369 ------------------------HSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSV 404
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEM----IQTDMQPNTISLSGVLAACAQVKGVK 215
D+V + AM++GY G +D +EM ++ + PN I+L +L + +K
Sbjct: 405 DVVVFTAMISGYLHNGL------YIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALK 458
Query: 216 LGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
LG+ +HG++++ I + CG + + +F +LS RD+V WNS+I+
Sbjct: 459 LGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCA 518
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLGTGSF 313
+S A+D+ R + V+ + + V+I + L AC L + + L + +
Sbjct: 519 QSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVY 578
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ LIDMY +CG ++ + +F M KN+VSWN +I+ G
Sbjct: 579 SESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACG 619
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 144/275 (52%), Gaps = 28/275 (10%)
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
+ C + L+DL ++ + + SG+ D + + NSL+ Y+KC + F + +
Sbjct: 247 SVCASKLLIDLGVQLHGLVVVSGV----DFEGSIKNSLLSMYSKCGRFDDASKLFRMMSR 302
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
D V+WN M++GY G EE EMI + + P+ I+ S +L + ++ + ++ K
Sbjct: 303 ADTVTWNCMISGYVQSGLMEESLTFF--YEMISSGVLPDAITFSSLLPSVSKFENLEYCK 360
Query: 219 AIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
IH Y++RH I L C V + ++F+Q ++ DVVV+ ++IS ++ +G
Sbjct: 361 QIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNG 420
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN----------- 316
+D+L++ R ++ + PN +T+VS+LP L AL G F+
Sbjct: 421 LYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGC 480
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
A+IDMY +CG + + +IF + +++VSWN MI+
Sbjct: 481 AVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMIT 515
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 96/398 (24%), Positives = 167/398 (41%), Gaps = 77/398 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC-----------------------NWTSMM 37
+ G QVHA LIV + ++ ++L ++ W S++
Sbjct: 51 LRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSII 110
Query: 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
+ G + + ++ M+ GV PD P + KAC LK+++ + D + S+ +
Sbjct: 111 SSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMD 170
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
N V L+ +++ G++++ S LF+ ++
Sbjct: 171 CNEFVASSLIKAYLEYGKIDVPSKLFD------------------------------RVL 200
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
QKD V WN ML GYA G + V M M Q + PN ++ VL+ CA + LG
Sbjct: 201 QKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQ--ISPNAVTFDCVLSVCASKLLIDLG 258
Query: 218 KAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
+HG V+ + + CG + +F +S D V WN +IS +V+S
Sbjct: 259 VQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQS 318
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVW 315
G + ++L ++I + V P+ +T S+LP+ K L + F+
Sbjct: 319 GLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLT 378
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ALID Y +C + ++ IF ++V + MIS Y
Sbjct: 379 SALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGY 416
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/384 (20%), Positives = 173/384 (45%), Gaps = 77/384 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------CN------WTSMMGM 39
+E Q+H +++ + L FL S L++ + CN +T+M+
Sbjct: 356 LEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISG 415
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G Y + + +F ++ + P+ + L ++G++++ ++I F+ N
Sbjct: 416 YLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFD-N 474
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
C I C ++ID YAKC + +++ F ++ ++
Sbjct: 475 RCN--------IGC---------------------AVIDMYAKCGRMNLAYEIFERLSKR 505
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSWN+M+ A ++ +M + + + + +S+S L+ACA + GKA
Sbjct: 506 DIVSWNSMITRCAQSDNPSAAIDIFRQMGV--SGICYDCVSISAALSACANLPSESFGKA 563
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IHG++++H I + CG + + +VF + +++V WNSII+A G+
Sbjct: 564 IHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGK 623
Query: 269 VVDALDLLRDVI-VANVKPNTVTIVSVLPACLKLAALPQ------------GLGTGSFVW 315
+ D+L L +++ + ++P+ +T + ++ +C + + + G+ +
Sbjct: 624 LKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHY 683
Query: 316 NALIDMYGRCGAIQKSRKIFVLMP 339
++D++GR G + ++ + MP
Sbjct: 684 ACVVDLFGRAGRLTEAYETVKSMP 707
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 24/178 (13%)
Query: 201 LSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLS 249
LS +L AC+ ++ GK +H +++ + I + CG +F +L
Sbjct: 38 LSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLD 97
Query: 250 TR--DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ- 306
R + WNSIIS+FVR+G + AL ++ V P+ T ++ AC+ L
Sbjct: 98 LRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGI 157
Query: 307 ----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G+ FV ++LI Y G I K+F + K+ V WNVM++ Y
Sbjct: 158 DFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYA 215
>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 102/384 (26%), Positives = 175/384 (45%), Gaps = 52/384 (13%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCN-----------------------WTSMMGMYNV 42
QVHAH+ G+E C F+ ++LL WT+++ Y +
Sbjct: 57 QVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALIRGYAL 116
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI-KFEGNAC 101
G + E V L+ M +G+ P F + KACS D +G+ V+ I I F +
Sbjct: 117 QGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDLY 176
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
V L+D+++KCG + +F+EM D+D + SLI YAK ++ + F + KD
Sbjct: 177 VGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKD 236
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK----- 215
+V+W AM+ GYA E + + M+ ++ + ++L GV++ACAQ+ K
Sbjct: 237 MVAWTAMVTGYAQNARPREALEVFERMQ--AAGVKTDEVTLVGVISACAQLGAAKYANWV 294
Query: 216 --------LGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
G + V I + CG V + VF ++ R+V ++S+I F G
Sbjct: 295 RDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHG 354
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GLGTGSFVW 315
A++L +++ +KPN VT + VL AC + Q G+ +
Sbjct: 355 LAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHY 414
Query: 316 NALIDMYGRCGAIQKSRKIFVLMP 339
++D+ GR G ++++ + +MP
Sbjct: 415 ACMVDLLGRAGRLEEALNLVKMMP 438
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 112/254 (44%), Gaps = 58/254 (22%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F +++ + W A++ GYAL G E L + M + + P + + + +L AC+
Sbjct: 96 FQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMR--RQGIGPVSFTFTALLKACSAAL 153
Query: 213 GVKLGKAIHG------------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
V LG+ +H YV I + CG + C VF+++ RDV+ W S+I
Sbjct: 154 DVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLI 213
Query: 261 SAFVRSGQVV-------------------------------DALDLLRDVIVANVKPNTV 289
A+ + G + +AL++ + A VK + V
Sbjct: 214 VAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEV 273
Query: 290 TIVSVLPACLKLAALP-----------QGLGTGS--FVWNALIDMYGRCGAIQKSRKIFV 336
T+V V+ AC +L A G G S V +ALIDMY +CG+++ + K+F
Sbjct: 274 TLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFE 333
Query: 337 LMPHKNLVSWNVMI 350
M +N+ S++ MI
Sbjct: 334 RMEERNVYSYSSMI 347
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 73/182 (40%), Gaps = 34/182 (18%)
Query: 201 LSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCS----------------V 244
L VL C + VK +H ++ R + C FV+ V
Sbjct: 42 LVSVLHGCTHINQVK---QVHAHIFRKGLE---QCCFVLAKLLRTLTKLDVPMDPYPRLV 95
Query: 245 FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL--- 301
F Q+ + +W ++I + G ++++ L + + P + T ++L AC
Sbjct: 96 FQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDV 155
Query: 302 ---------AALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
L G G+ +V N LIDMY +CG + ++F M ++++SW +I
Sbjct: 156 NLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVA 215
Query: 353 YG 354
Y
Sbjct: 216 YA 217
>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Cucumis sativus]
Length = 759
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 89/330 (26%), Positives = 161/330 (48%), Gaps = 21/330 (6%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M Y +E +NLF+ M+++G+ PD +CS + D + + +
Sbjct: 225 SWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMI 284
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM--DQDFLVNNSLIDFYAKCRYLKVS 149
N+ VK LLD+ K G +EI +F+E+ ++ + N +I Y + L ++
Sbjct: 285 DQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLA 344
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + ++D+VSWN+M+AGYA G L EM + D+QP+ ++++ VL+AC
Sbjct: 345 RELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEM-ISCMDIQPDEVTIASVLSACG 403
Query: 210 QVKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNS 258
+ +KL + V +I L + CG V + +F + TRDVV +N+
Sbjct: 404 HIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNT 463
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV---- 314
+IS F +G +A+ L+ + ++P+ VT + VL AC L +G +
Sbjct: 464 LISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQAPT 523
Query: 315 ---WNALIDMYGRCGAIQKSRKIFVLMPHK 341
+ ++D+ GR G + +++ + MP K
Sbjct: 524 VDHYACMVDLLGRAGELDEAKMLIQSMPMK 553
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/409 (21%), Positives = 180/409 (44%), Gaps = 94/409 (22%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
++ M+ Y+ +G + ++V+LF +RP FV + K + G + Y++
Sbjct: 68 YSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAG-----KSGNLFHAYVL 122
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN------------------- 133
+ + ++ +LD++ K G++++ LFE+M + L +
Sbjct: 123 KLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVV 182
Query: 134 -------------NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEV 180
S++ YAK L+ + F ++ ++ +VSWNAM + YA +E
Sbjct: 183 LFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEA 242
Query: 181 TNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS-------- 232
NL +M ++ + P+ + +++C+ + L +I + + HI L+
Sbjct: 243 LNLFHQM--LEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALL 300
Query: 233 -----------------------------------TACGFVICSCSVFNQLSTRDVVVWN 257
T G + + +F+ + RDVV WN
Sbjct: 301 DMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWN 360
Query: 258 SIISAFVRSGQVVDALDLLRDVIV-ANVKPNTVTIVSVLPACLKLAAL-----------P 305
S+I+ + ++G+ +++L +++I +++P+ VTI SVL AC + AL
Sbjct: 361 SMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVRE 420
Query: 306 QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + G +N+LI MY +CG++ + +IF M +++VS+N +IS +
Sbjct: 421 KNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFA 469
>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 687
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 160/309 (51%), Gaps = 26/309 (8%)
Query: 70 KVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQ 128
K+ C+ + R V+ +I F ++ L+D++ KCG +++ LF+ M ++
Sbjct: 24 KLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRMLER 83
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
+ NS+I + K +L + F K+ Q D SWN+M++G+ G +E L+ +
Sbjct: 84 NIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEA--LVYFAQ 141
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGF 237
M N S L+ACA ++ +KLG IH V R + + + + CG
Sbjct: 142 MHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGR 201
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
V + SVF++++ R V WNS+I+ + ++G V +AL + ++I V+P+ VT+ SV+ A
Sbjct: 202 VEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSA 261
Query: 298 CLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
C ++A+ +G + V NAL+DMY +C I ++R IF +MP +++VS
Sbjct: 262 CATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVS 321
Query: 346 WNVMISVYG 354
M+S Y
Sbjct: 322 ETSMVSGYA 330
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/405 (22%), Positives = 182/405 (44%), Gaps = 55/405 (13%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++LG Q+H+ + ++GS L++++ +W S++
Sbjct: 167 LKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITC 226
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI-KFEG 98
Y G +E + +F MI GV PD V AC+ + + G+ ++ ++ +F
Sbjct: 227 YEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRN 286
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
+ + LLD++ KC R+ +F+ M + + S++ YAK +KV+ FS +
Sbjct: 287 DLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMM 346
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
KD+++WNA++AG G EE L ++ + + P + +L ACA + ++LG
Sbjct: 347 VKDVITWNALIAGCTQNGENEEALILFRLLK--RESVWPTHYTFGNLLNACANLADLQLG 404
Query: 218 KAIHGYVLRHH-----------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ H +VL+H I + CG V C VF + +D V WN++I
Sbjct: 405 RQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMI 464
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GL 308
+ ++G AL++ ++ + P+ VT++ VL AC L + GL
Sbjct: 465 VGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGL 524
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ ++D+ GR G +++++ + M + + W +++
Sbjct: 525 MPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAA 569
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/409 (23%), Positives = 173/409 (42%), Gaps = 104/409 (25%)
Query: 18 LCAFLGSQLLE----VF--------CNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH 65
+CAF S L+ +F C+W SM+ + G ++E + F M G +
Sbjct: 92 ICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNE 151
Query: 66 FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEE 125
+ AC+ L+D ++G ++ S+ + N
Sbjct: 152 YSFGSALSACAGLQDLKLGSQIH----SLVYRSNYL------------------------ 183
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
D + ++L+D Y+KC ++ + F ++ + VSWN+++ Y G +E +
Sbjct: 184 --SDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIF- 240
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL-----RHHIHLSTACGFVIC 240
+EMI+ ++P+ ++L+ V++ACA + +K G+ IH V+ R+ + L A +
Sbjct: 241 -VEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYA 299
Query: 241 SCS--------------------------------------VFNQLSTRDVVVWNSIISA 262
C+ +F+ + +DV+ WN++I+
Sbjct: 300 KCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAG 359
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS---------- 312
++G+ +AL L R + +V P T ++L AC LA L G S
Sbjct: 360 CTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQ 419
Query: 313 -------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
FV N+LIDMY +CG+++ ++F M K+ VSWN MI Y
Sbjct: 420 YGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYA 468
>gi|302798571|ref|XP_002981045.1| hypothetical protein SELMODRAFT_334 [Selaginella moellendorffii]
gi|300151099|gb|EFJ17746.1| hypothetical protein SELMODRAFT_334 [Selaginella moellendorffii]
Length = 833
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 97/398 (24%), Positives = 176/398 (44%), Gaps = 75/398 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
+E G +VH H+ + F G++L+ ++ +WT+M+
Sbjct: 14 LEQGRRVHGHVQRHADDRSLFFGNRLVNMYRRCSSLDEARKVFDRMRERDVVSWTAMISA 73
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G+ + ++LF M + P+ + +AC + GK ++ + +++
Sbjct: 74 YAQTGHQRQALDLFTEMAGSSLDPNRVTFLALLEACDSPEFLEDGKQIHARVSALQL--- 130
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
++ D V N+++ Y KC ++ FS+++++
Sbjct: 131 --------------------------LESDVPVANAVMGMYRKCERADLAMAVFSEMRER 164
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
DL+SWN +A A G LL M++ M P+ ++ L AC + + G+
Sbjct: 165 DLISWNNAIAANAESGDYTFTLALLKSMQL--EGMAPDKVTFVSALNACIGSRSLSNGRL 222
Query: 220 IHGYVLRHHIH----LSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH VL + L TA CG + + +F+++ R+VV WN+++++ +
Sbjct: 223 IHALVLERGMEGDVVLGTALVTMYGRCGCLESAREIFHRMPERNVVSWNAMVASCTLNAH 282
Query: 269 VVDALDLL-RDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------VWN 316
+A++L R V VA V+P V+ ++VL A AL +G + V N
Sbjct: 283 FAEAIELFKRMVAVAMVEPTRVSFITVLNAVTTPEALAEGRRIHAMIQERQLLSQIEVAN 342
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
AL+ MYGRCG + + ++F M ++LVSWN MIS Y
Sbjct: 343 ALVTMYGRCGGVGDAERVFSAMERRDLVSWNAMISAYA 380
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 127/263 (48%), Gaps = 50/263 (19%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V N+L+ Y +C + + FS ++++DLVSWNAM++ YA G EV NL M +
Sbjct: 340 VANALVTMYGRCGGVGDAERVFSAMERRDLVSWNAMISAYAQSGLAREVVNLFHRMRAER 399
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVIC----------- 240
+ P+ I+ L ACA+++ + G+ +H HLS GF C
Sbjct: 400 --VPPDRITFLMALDACAEIRDLDSGRTVH--------HLSVESGFGSCISVANATMHLY 449
Query: 241 ----------------SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV 284
+F ++ RDV+ WN++I+ +V++G AL + + +++ +
Sbjct: 450 SSCSSSSSSSSSLMEVVAGIFESMAARDVISWNTMITGYVQAGDSFSALSIFKRMLLEGI 509
Query: 285 KPNTVTIVSVLPACLKLAALPQG-------------LGTGSFVWNALIDMYGRCGAIQKS 331
+ N VT +S+L C A L QG L + V A+++MYG+CG + +
Sbjct: 510 RGNQVTFMSLLSVCDSRAFLRQGETIHRRVINQTPELSSDPIVAAAIVNMYGKCGELDTA 569
Query: 332 RKIFVLMPHKNLVSWNVMISVYG 354
R +F H+NL SWN MIS Y
Sbjct: 570 RHLFEDTSHRNLASWNSMISAYA 592
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 151/355 (42%), Gaps = 64/355 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G E+VNLF+ M + V PD AC+E++D G+ V+
Sbjct: 371 SWNAMISAYAQSGLAREVVNLFHRMRAERVPPDRITFLMALDACAEIRDLDSGRTVHHLS 430
Query: 92 ISIKFEGNACVKRPLLDLFIKCGR--------MEITSGLFEEMDQDFLVNNSLIDFYAKC 143
+ F V + L+ C ME+ +G+FE M
Sbjct: 431 VESGFGSCISVANATMHLYSSCSSSSSSSSSLMEVVAGIFESM----------------- 473
Query: 144 RYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSG 203
+D++SWN M+ GY G + + L M+ ++ N ++
Sbjct: 474 -------------AARDVISWNTMITGYVQAG--DSFSALSIFKRMLLEGIRGNQVTFMS 518
Query: 204 VLAACAQVKGVKLGKAIHGYVLRHHIHLST-------------ACGFVICSCSVFNQLST 250
+L+ C ++ G+ IH V+ LS+ CG + + +F S
Sbjct: 519 LLSVCDSRAFLRQGETIHRRVINQTPELSSDPIVAAAIVNMYGKCGELDTARHLFEDTSH 578
Query: 251 RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA------- 303
R++ WNS+ISA+ G+ A DL + V P+ VT +++L AC+ A
Sbjct: 579 RNLASWNSMISAYALHGRAEQAFDLSERMRREGVLPDRVTFITLLNACVAGGAVRHGKMI 638
Query: 304 ----LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ GL + V NAL++ Y +CG + + +F + ++++VSWN +I+ +
Sbjct: 639 HARIIDSGLEKDTVVANALVNFYSKCGNLDTATSLFGALDYRDVVSWNGIIAGFA 693
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 145/345 (42%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G +++F M+ +G+R + + C R G+ ++ +
Sbjct: 480 SWNTMITGYVQAGDSFSALSIFKRMLLEGIRGNQVTFMSLLSVCDSRAFLRQGETIHRRV 539
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I+ + P E+ D +V ++++ Y KC L +
Sbjct: 540 IN---------QTP-------------------ELSSDPIVAAAIVNMYGKCGELDTARH 571
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++L SWN+M++ YAL G E+ +L + M + + P+ ++ +L AC
Sbjct: 572 LFEDTSHRNLASWNSMISAYALHGRAEQAFDLSERMR--REGVLPDRVTFITLLNACVAG 629
Query: 212 KGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSII 260
V+ GK IH ++ + T CG + + S+F L RDVV WN II
Sbjct: 630 GAVRHGKMIHARIIDSGLEKDTVVANALVNFYSKCGNLDTATSLFGALDYRDVVSWNGII 689
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------L 308
+ F +G +AL + + V+P+ +T +++L A L QG L
Sbjct: 690 AGFAHNGHAREALKSMWLMQQDGVRPDAITFLTILSASSHAGFLRQGGDDFVSMAVDHEL 749
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNL-VSWNVMISV 352
G + +ID+ GR G I + M ++ VSW ++S
Sbjct: 750 ERGVEHYGCMIDLLGRAGRIGDAEYFVSAMRDEDKEVSWMTLLSA 794
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 23/172 (13%)
Query: 204 VLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRD 252
++ AC ++ G+ +HG+V RH +++ C + + VF+++ RD
Sbjct: 4 LMRACGISGALEQGRRVHGHVQRHADDRSLFFGNRLVNMYRRCSSLDEARKVFDRMRERD 63
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----- 307
VV W ++ISA+ ++G ALDL ++ +++ PN VT +++L AC L G
Sbjct: 64 VVSWTAMISAYAQTGHQRQALDLFTEMAGSSLDPNRVTFLALLEACDSPEFLEDGKQIHA 123
Query: 308 -------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
L + V NA++ MY +C + +F M ++L+SWN I+
Sbjct: 124 RVSALQLLESDVPVANAVMGMYRKCERADLAMAVFSEMRERDLISWNNAIAA 175
>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Glycine max]
Length = 824
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 105/394 (26%), Positives = 185/394 (46%), Gaps = 80/394 (20%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNVLG 44
Q+HA L+V G L +QL+ ++ +W SM+ Y G
Sbjct: 69 QLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVRRG 128
Query: 45 YYEEIVN-LFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
Y + ++ + L+ GVRPD + P V KAC L D G+ ++ +++ + FE
Sbjct: 129 RYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD---GEKMHCWVLKMGFE------ 179
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
D V SLI Y++ ++V+H F + +D+ S
Sbjct: 180 ------------------------HDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGS 215
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
WNAM++G+ G E +LD M+ + M +T+++S +L CAQ V G +H Y
Sbjct: 216 WNAMISGFCQNGNVAEALRVLDRMKTEEVKM--DTVTVSSMLPICAQSNDVVGGVLVHLY 273
Query: 224 VLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
V++H I++ + G + + VF+ + RD+V WNSII+A+ ++ V A
Sbjct: 274 VIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTA 333
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----W--------NALID 320
L ++++ ++P+ +T+VS+ +L+ G FV W NAL++
Sbjct: 334 LGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVN 393
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
MY + G+I +R +F +P ++++SWN +I+ Y
Sbjct: 394 MYAKLGSIDCARAVFEQLPSRDVISWNTLITGYA 427
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 138/255 (54%), Gaps = 30/255 (11%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
++ D V+N+LI+ Y+K L+ + F ++ +DLVSWN+++A Y + VT L
Sbjct: 279 LESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQND--DPVTALGF 336
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH------------IHLST 233
EM+ M+P+ +++ + + Q+ ++G+A+HG+V+R +++
Sbjct: 337 FKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYA 396
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG---QVVDALDLLRDVIVANVKPNTVT 290
G + C+ +VF QL +RDV+ WN++I+ + ++G + +DA +++ + + PN T
Sbjct: 397 KLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEG--RTIVPNQGT 454
Query: 291 IVSVLPACLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLMP 339
VS+LPA + AL QG+ FV LIDMYG+CG ++ + +F +P
Sbjct: 455 WVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIP 514
Query: 340 HKNLVSWNVMISVYG 354
+ V WN +IS G
Sbjct: 515 QETSVPWNAIISSLG 529
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/393 (21%), Positives = 167/393 (42%), Gaps = 75/393 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G+ VH ++I G+E F+ + L+ ++ +W S++ Y
Sbjct: 267 GVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQ 326
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+ F M+ G+RPD + +L D R+G+ V+ +++
Sbjct: 327 NDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVV---------- 376
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+C +E+ D ++ N+L++ YAK + + F ++ +D++
Sbjct: 377 ---------RCRWLEV----------DIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVI 417
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SWN ++ GYA G E + + ME +T + PN + +L A + V ++ G IHG
Sbjct: 418 SWNTLITGYAQNGLASEAIDAYNMMEEGRT-IVPNQGTWVSILPAYSHVGALQQGMKIHG 476
Query: 223 YVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
++++ + L CG + + S+F ++ V WN+IIS+ G
Sbjct: 477 RLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEK 536
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNALI 319
AL L +D+ VK + +T VS+L AC + + + + ++
Sbjct: 537 ALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMV 596
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMIS 351
D++GR G ++K+ + MP + S W +++
Sbjct: 597 DLFGRAGYLEKAYNLVSNMPIQADASIWGTLLA 629
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 94/318 (29%), Positives = 160/318 (50%), Gaps = 46/318 (14%)
Query: 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL 107
E + L++ M+ G++PDH P V KAC+E G V+ +++ FE ++ + L+
Sbjct: 178 EALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLI 237
Query: 108 DLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCK--FSKIKQKDLVSW 164
L+ + LF +D + N++ID Y K ++++ H + F ++ +D++SW
Sbjct: 238 HLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVK--HVEMGHARMVFDRMVCRDVISW 295
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
N M+ GYA+ G +E L DEM + N +S + +LA G+V
Sbjct: 296 NTMINGYAIVGKIDEAKRLFDEMP------ERNLVSWNSMLA---------------GFV 334
Query: 225 LRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV 284
CG V + +F+++ RDVV WNS+++ + + G+ +AL L + V
Sbjct: 335 ---------KCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGV 385
Query: 285 KPNTVTIVSVLPACLKLAALPQGLG-----------TGSFVWNALIDMYGRCGAIQKSRK 333
KP T+VS+L AC L AL +GL S V AL+DMY +CG I + +
Sbjct: 386 KPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQ 445
Query: 334 IFVLMPHKNLVSWNVMIS 351
+F M K++++WN +I+
Sbjct: 446 VFNAMESKDVLAWNTIIA 463
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/369 (24%), Positives = 174/369 (47%), Gaps = 60/369 (16%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNL--------FY 54
G+ VH H++ G E +++ S L+ ++ N LG +++ NL +
Sbjct: 213 FGLLVHTHVVKSGFECDSYIVSSLIHLYANGKD-------LGAAKQLFNLCSARDVVSWN 265
Query: 55 LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG 114
MID Y E+ R+ V+D M+ + +++ + G
Sbjct: 266 AMIDG------------YVKHVEMGHARM---VFDRMVC----RDVISWNTMINGYAIVG 306
Query: 115 RMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYAL 173
+++ LF+EM + LV+ NS++ + KC ++ + FS++ +D+VSWN+MLA YA
Sbjct: 307 KIDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQ 366
Query: 174 GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST 233
G E L D+M + ++P ++ +L+ACA + + G +H Y+ + I +++
Sbjct: 367 CGKPNEALALFDQMRAV--GVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNS 424
Query: 234 -----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
CG + + VFN + ++DV+ WN+II+ G V +A L +++ A
Sbjct: 425 IVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEA 484
Query: 283 NVKPNTVTIVSVLPACLKLAALPQG----------LGTGSFV--WNALIDMYGRCGAIQK 330
V+PN +T V++L AC + +G G V + +ID+ R G +++
Sbjct: 485 GVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEE 544
Query: 331 SRKIFVLMP 339
+ ++ MP
Sbjct: 545 AMELIGTMP 553
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 87/183 (47%), Gaps = 20/183 (10%)
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGF 237
M+Q+ ++P+ ++ V+ AC + G +H +V++ IHL
Sbjct: 186 MLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKD 245
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRS---GQVVDALDLL--RDVIVANVKPNTVTIV 292
+ + +FN S RDVV WN++I +V+ G D + RDVI N N IV
Sbjct: 246 LGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIV 305
Query: 293 SVLPACLKL-AALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ +L +P+ WN+++ + +CG ++ + +F MP +++VSWN M++
Sbjct: 306 GKIDEAKRLFDEMPE---RNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLA 362
Query: 352 VYG 354
Y
Sbjct: 363 CYA 365
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 90/207 (43%), Gaps = 26/207 (12%)
Query: 170 GYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH- 228
G+ LGG+ + L M + N S +L+ K ++ K +H ++ HH
Sbjct: 68 GFGLGGWSD--AKLQSSMSRTPNPLT-NPPSNPQILSLFNPCKTLRHLKQVHAQIITHHN 124
Query: 229 -----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLR 277
LS F+ + ++F+ L ++NS+I A S ++AL L
Sbjct: 125 SPFQLSALASLSALSPFPTFLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYH 184
Query: 278 DVIVANVKPNTVTIVSVLPAC-----------LKLAALPQGLGTGSFVWNALIDMYGRCG 326
++ + +KP+ +T V+ AC + + G S++ ++LI +Y
Sbjct: 185 TMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGK 244
Query: 327 AIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ ++++F L +++VSWN MI Y
Sbjct: 245 DLGAAKQLFNLCSARDVVSWNAMIDGY 271
>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Glycine max]
Length = 693
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 98/320 (30%), Positives = 153/320 (47%), Gaps = 28/320 (8%)
Query: 62 RPDHFVCPKVYK----ACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRME 117
R DH +VY AC + +G+ V+ + + F + LLD++ KCG +
Sbjct: 80 RTDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLV 139
Query: 118 ITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGF 176
LF+EM +D N++I YAK L+ + F ++ Q+D SWNA ++GY
Sbjct: 140 DAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQ 199
Query: 177 REEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST--- 233
E L M+ + N +LS LAA A + ++LGK IHGY++R ++L
Sbjct: 200 PREALELFRVMQRHERS-SSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVW 258
Query: 234 --------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK 285
CG + + +F+Q+ RDVV W ++I G+ + L RD++ + V+
Sbjct: 259 SALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVR 318
Query: 286 PNTVTIVSVLPACLKLAA-----------LPQGLGTGSFVWNALIDMYGRCGAIQKSRKI 334
PN T VL AC AA + G GSF +AL+ MY +CG + +R++
Sbjct: 319 PNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRV 378
Query: 335 FVLMPHKNLVSWNVMISVYG 354
F M +LVSW +I Y
Sbjct: 379 FNEMHQPDLVSWTSLIVGYA 398
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 101/391 (25%), Positives = 171/391 (43%), Gaps = 60/391 (15%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
+ELG +VHAH F+ ++LL+++ C+W +M+
Sbjct: 103 LELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVG 162
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y LG E+ LF D+ + D+F R +++ M + E +
Sbjct: 163 YAKLGRLEQARKLF----DEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQ--RHERS 216
Query: 100 ACVK-----RPLLDLFIKCGRM--EITSGLFE-EMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ K I C R+ EI L E++ D +V ++L+D Y KC L +
Sbjct: 217 SSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARG 276
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++K +D+VSW M+ G REE L +++Q+ ++PN + +GVL ACA
Sbjct: 277 IFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLF--RDLMQSGVRPNEYTFAGVLNACADH 334
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
LGK +HGY++ +H+ + CG + VFN++ D+V W S+I
Sbjct: 335 AAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLI 394
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
+ ++GQ +AL ++ + KP+ VT V VL AC + +GL +
Sbjct: 395 VGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGL 454
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMP 339
+ +ID+ R G +++ I MP
Sbjct: 455 MHTADHYACVIDLLARSGRFKEAENIIDNMP 485
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 18/124 (14%)
Query: 246 NQLSTRDVVV----WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
N L+ +D+V + + + +V +A++LL + +P+ +++ AC++
Sbjct: 44 NHLNPKDLVSEDNKFEEAVDVLCQQKRVKEAVELLHRT---DHRPSARVYSTLIAACVRH 100
Query: 302 AALPQGLG-----------TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
AL G G F+ N L+DMY +CG++ ++ +F M H++L SWN MI
Sbjct: 101 RALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMI 160
Query: 351 SVYG 354
Y
Sbjct: 161 VGYA 164
>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 701
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 160/347 (46%), Gaps = 57/347 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W SM+ Y + L+ M+ G +PD+F P V KAC +L +G+ V+
Sbjct: 92 WNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRKVH---- 147
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ + GL ++D V NS++ Y K ++ +
Sbjct: 148 ----------------------ALVVVGGL----EEDVYVGNSILSMYFKFGDVEAARVV 181
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ +DL SWN M++G+ G + +M + + +L +L+AC V
Sbjct: 182 FDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMR--RDGFVGDRTTLLALLSACGDVM 239
Query: 213 GVKLGKAIHGYVLRHH--------------IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+K+GK IHGYV+R+ I + C V C+ +F L +DVV WNS
Sbjct: 240 DLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNS 299
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF----- 313
+IS + + G AL+L ++V P+ VT++SVL AC +++AL G S+
Sbjct: 300 LISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRG 359
Query: 314 ------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V ALI MY CG++ + ++F MP KNL + VM++ +G
Sbjct: 360 YVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFG 406
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/396 (21%), Positives = 168/396 (42%), Gaps = 74/396 (18%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMY 40
E+G +VHA ++V G+E ++G+ +L ++ +W +MM +
Sbjct: 141 EMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGF 200
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G +F M G D + AC ++ D +VGK+++ Y++ G
Sbjct: 201 VKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRV 260
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
C FL+N S+ID Y C + + F ++ KD
Sbjct: 261 C--------------------------NGFLMN-SIIDMYCNCESVSCARKLFEGLRVKD 293
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+VSWN++++GY G + L M ++ P+ +++ VLAAC Q+ ++LG +
Sbjct: 294 VVSWNSLISGYEKCGDAFQALELFGRMVVVGA--VPDEVTVISVLAACNQISALRLGATV 351
Query: 221 HGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
YV++ I + CG ++C+C VF+++ +++ +++ F G+
Sbjct: 352 QSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRG 411
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNA 317
+A+ + +++ V P+ +VL AC + +G + ++
Sbjct: 412 REAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSC 471
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
L+D+ GR G + ++ + M K N W ++S
Sbjct: 472 LVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSA 507
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 114/239 (47%), Gaps = 27/239 (11%)
Query: 140 YAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI 199
YA C ++ + F +I K+ WN+M+ GYA L ++M+ +P+
Sbjct: 68 YAVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRA--LFLYLKMLHFGQKPDNF 125
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTAC-------GFVICSCSVFNQL 248
+ VL AC + ++G+ +H V L +++ + G V + VF+++
Sbjct: 126 TYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRM 185
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL---- 304
RD+ WN+++S FV++G+ A ++ D+ + T++++L AC + L
Sbjct: 186 LVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGK 245
Query: 305 ----------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G F+ N++IDMY C ++ +RK+F + K++VSWN +IS Y
Sbjct: 246 EIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGY 304
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 73/150 (48%), Gaps = 18/150 (12%)
Query: 222 GYVLRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALD 274
G LR + +L+T CG + + +F+Q+ ++ +WNS+I + + AL
Sbjct: 51 GGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALF 110
Query: 275 LLRDVIVANVKPNTVTIVSVLPAC---------LKLAAL--PQGLGTGSFVWNALIDMYG 323
L ++ KP+ T VL AC K+ AL GL +V N+++ MY
Sbjct: 111 LYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYF 170
Query: 324 RCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ G ++ +R +F M ++L SWN M+S +
Sbjct: 171 KFGDVEAARVVFDRMLVRDLTSWNTMMSGF 200
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/244 (20%), Positives = 97/244 (39%), Gaps = 56/244 (22%)
Query: 1 MELGIQVHAHLIVCGV--ELC-AFLGSQLLEVFCN---------------------WTSM 36
+++G ++H +++ G +C FL + +++++CN W S+
Sbjct: 241 LKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSL 300
Query: 37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKF 96
+ Y G + + LF M+ G PD V AC+++ R+G V Y++ +
Sbjct: 301 ISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGY 360
Query: 97 EGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKI 156
N V L+ ++ CG + +F+EM
Sbjct: 361 VVNVVVGTALIGMYANCGSLVCACRVFDEM------------------------------ 390
Query: 157 KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKL 216
+K+L + M+ G+ + G E ++ EM+ + P+ + VL+AC+ V
Sbjct: 391 PEKNLPACTVMVTGFGIHGRGREAISIF--YEMLGKGVTPDEGIFTAVLSACSHSGLVDE 448
Query: 217 GKAI 220
GK I
Sbjct: 449 GKEI 452
>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Vitis vinifera]
Length = 993
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 163/344 (47%), Gaps = 53/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ + G Y E + ++ M D G +PD + A + + G ++ Y
Sbjct: 386 SWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYA 445
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ +GL D D V NSL+D YAK +K C
Sbjct: 446 MK--------------------------NGL----DSDLQVGNSLVDMYAKFCSMKYMDC 475
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K+ KD+VSW ++AG+A G L E+++ D+ + + +S +L AC+ +
Sbjct: 476 IFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDL--DVMMISSILLACSGL 533
Query: 212 KGVKLGKAIHGYVLRHH----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
K + K IH Y++R + + CG V + +F + +DVV W S+IS
Sbjct: 534 KLISSVKEIHSYIIRKGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMIS 593
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-------- 313
+V +G +AL+L + V+P+++++VS+L A L+AL +G F
Sbjct: 594 CYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVL 653
Query: 314 ---VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + L+DMY RCG ++KSR +F + +K+LV W MI+ YG
Sbjct: 654 EGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYG 697
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 104/393 (26%), Positives = 171/393 (43%), Gaps = 77/393 (19%)
Query: 4 GIQVHAHLIVCGVELCA-FLGSQLL---------------------EVFCNWTSMMGMYN 41
G QVHAH+I + FL ++L+ + W +M+G Y
Sbjct: 133 GQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYV 192
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G + L+ M G+ D P + KAC LKD R G +V+
Sbjct: 193 TNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHG------------ 240
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK-D 160
L IK G + I V NS++ Y KC L + F ++ +K D
Sbjct: 241 -------LAIKEGYVSIV-----------FVANSIVGMYTKCNDLNGARQLFDRMPEKED 282
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+VSWN+M++ Y+ G E L EM+ + + PNT + L AC +K G I
Sbjct: 283 VVSWNSMISAYSSNGQSIEALRLFGEMQ--KASLAPNTYTFVAALQACEDSSFIKQGMFI 340
Query: 221 HGYVLR--HHIHLSTACGFVIC---------SCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H VL+ ++I++ A + + ++F + D + WNS++S FV++G
Sbjct: 341 HATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLY 400
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNAL 318
+AL ++ A KP+ V ++S++ A + A+ GL + V N+L
Sbjct: 401 HEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSL 460
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+DMY + +++ IF MP K++VSW +I+
Sbjct: 461 VDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIA 493
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 155/336 (46%), Gaps = 65/336 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEV---FCN------------------WTSMMGMYNV 42
G+Q+HA+ + G++ +G+ L+++ FC+ WT+++ +
Sbjct: 438 GMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQ 497
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G + + LF + +G+ D + + ACS LK K+++ Y+I
Sbjct: 498 NGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIR--------- 548
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
GL D ++ N ++D Y +C + + F I+ KD+V
Sbjct: 549 -----------------KGL-----SDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVV 586
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW +M++ Y G E L M+ +T ++P++ISL +L+A A + +K GK IHG
Sbjct: 587 SWTSMISCYVHNGLANEALELFHLMK--ETGVEPDSISLVSILSAAASLSALKKGKEIHG 644
Query: 223 YVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+++R + + CG + S +VFN + +D+V+W S+I+A+ G
Sbjct: 645 FLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRA 704
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
A+DL R + ++ P+ + V+VL AC + +G
Sbjct: 705 AIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEG 740
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 101/205 (49%), Gaps = 28/205 (13%)
Query: 177 REEVTNLLDEMEMIQTDMQPNTISL----SGVLAACAQVKGVKLGKAIHGYV-----LRH 227
R V + + + P+ SL S VL C K + G+ +H ++ L +
Sbjct: 89 RGSVNEAFQSLTDLFANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFN 148
Query: 228 HIHLST-------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280
+ LST CG ++ + +F+ + + + WN++I A+V +G+ + +L+L R++
Sbjct: 149 SVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMR 208
Query: 281 VANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQ 329
V+ + + T +L AC L A+ +G + FV N+++ MY +C +
Sbjct: 209 VSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLN 268
Query: 330 KSRKIFVLMPHK-NLVSWNVMISVY 353
+R++F MP K ++VSWN MIS Y
Sbjct: 269 GARQLFDRMPEKEDVVSWNSMISAY 293
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 17/105 (16%)
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTI----VSVLPACLKLAALPQG------------L 308
+ G V +A L D + AN P+ ++ SVL C AL +G L
Sbjct: 88 KRGSVNEAFQSLTD-LFANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNAL 146
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
F+ L+ MYG+CG + + K+F MPHK + +WN MI Y
Sbjct: 147 FNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAY 191
>gi|296083841|emb|CBI24229.3| unnamed protein product [Vitis vinifera]
Length = 547
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 146/286 (51%), Gaps = 43/286 (15%)
Query: 47 EEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPL 106
E+ + LF M G +PD V +C+ L D GK+++
Sbjct: 93 EKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIH------------------ 134
Query: 107 LDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNA 166
ME+ F D V+++L+D Y KC L+++ F +I++K++VSWN+
Sbjct: 135 ---------MELVRSGFA---LDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNS 182
Query: 167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR 226
M+AGY+L G + L M+ + ++P +LS +L AC++ ++LGK IHGY++R
Sbjct: 183 MIAGYSLKGDSKSCIELFRRMD--EEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIR 240
Query: 227 HH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDL 275
+ I L CG + + +VF + +VV WN +IS +V+ G ++AL +
Sbjct: 241 NRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVI 300
Query: 276 LRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDM 321
D+ A VKP+ +T SVLPAC +LA L +G +F+ + +++
Sbjct: 301 FTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEI 346
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 124/249 (49%), Gaps = 31/249 (12%)
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQK-DLVSWNAMLAG------YALGGFREEVTNLLDE 186
SLI+ Y C + + F I+ D+ WN ++A + G E+ L +E
Sbjct: 42 KSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEPEKALELFEE 101
Query: 187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH-----------GYVLRHHIHLSTAC 235
M++ + +P++++L+ V+++CA++ ++ GK IH G+V + + C
Sbjct: 102 MKV--SGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKC 159
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
G + + VF Q+ ++VV WNS+I+ + G ++L R + ++P T+ S+L
Sbjct: 160 GCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSIL 219
Query: 296 PACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLV 344
AC + L G + FV ++LID+Y +CG I + +F MP N+V
Sbjct: 220 MACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVV 279
Query: 345 SWNVMISVY 353
SWNVMIS Y
Sbjct: 280 SWNVMISGY 288
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 79/373 (21%), Positives = 152/373 (40%), Gaps = 107/373 (28%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
+E G ++H L+ G L F+ S L++++ +W SM+
Sbjct: 127 LERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAG 186
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y++ G + + LF M ++G+RP + ACS + ++GK ++ Y+I + E +
Sbjct: 187 YSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEAD 246
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V L+DL+ KCG + +F+ M +
Sbjct: 247 IFVNSSLIDLYFKCGNIGSAENVFQNM------------------------------PKT 276
Query: 160 DLVSWNAMLAGY-ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
++VSWN M++GY +G + E + D M + ++P+ I+ + VL AC+Q+ ++ GK
Sbjct: 277 NVVSWNVMISGYVKVGSYLEALVIFTD---MRKAGVKPDAITFTSVLPACSQLAVLEKGK 333
Query: 219 AIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRD 278
IH +++ + ++ +F ++ D
Sbjct: 334 EIHNFIIESKLEINEV---------LFEKMQQSD-------------------------- 358
Query: 279 VIVANVKPNTVTIVSVLPACLKLAALPQG----------LGTGSFV--WNALIDMYGRCG 326
KP+ VT +++L AC + +G G V ++ LID+ GR G
Sbjct: 359 -----AKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVG 413
Query: 327 AIQKSRKIFVLMP 339
++++ +I P
Sbjct: 414 RLREAYEILQRTP 426
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 96/187 (51%), Gaps = 29/187 (15%)
Query: 197 NTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTACGFVICSCSVFNQL---- 248
+T L +L C K +K GK IH + L+++I L + + SC +F
Sbjct: 2 DTTKLLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVF 61
Query: 249 ----STRDVVVWNSIISA------FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ D+ +WN +++A F+ + AL+L ++ V+ KP++VT+ +V+ +C
Sbjct: 62 QTIENPLDITLWNGLMAACTKNFIFIEGLEPEKALELFEEMKVSGFKPDSVTLTTVISSC 121
Query: 299 LKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
+L L +G FV +AL+DMYG+CG ++ ++++F + KN+VSWN
Sbjct: 122 ARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWN 181
Query: 348 VMISVYG 354
MI+ Y
Sbjct: 182 SMIAGYS 188
>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g22410, mitochondrial; Flags: Precursor
gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
Length = 681
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 164/332 (49%), Gaps = 26/332 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W ++ Y +G E+ + ++ LM +GV+PD + +CS L D GK+ Y+Y+
Sbjct: 224 SWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYV 283
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSH 150
+ L+D+F KCG + +F+ +++ +V+ ++I YA+C L VS
Sbjct: 284 KENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSR 343
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F +++KD+V WNAM+ G ++ L EM+ T +P+ I++ L+AC+Q
Sbjct: 344 KLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNT--KPDEITMIHCLSACSQ 401
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ + +G IH Y+ ++ + L+ A CG + + SVF+ + TR+ + + +I
Sbjct: 402 LGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAI 461
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----- 314
I G A+ ++I A + P+ +T + +L AC + G S +
Sbjct: 462 IGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFN 521
Query: 315 -------WNALIDMYGRCGAIQKSRKIFVLMP 339
++ ++D+ GR G ++++ ++ MP
Sbjct: 522 LNPQLKHYSIMVDLLGRAGLLEEADRLMESMP 553
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 96/425 (22%), Positives = 180/425 (42%), Gaps = 113/425 (26%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCNWTS----------MMGMYN---------VLGYY 46
Q+ A +I+ G+ L F S+L+ FC + + G+ N + G+
Sbjct: 71 QIQAQMIINGLILDPFASSRLI-AFCALSESRYLDYSVKILKGIENPNIFSWNVTIRGFS 129
Query: 47 E-----EIVNLFYLMIDKG---VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
E E L+ M+ G RPDHF P ++K C++L+ +G + +++ ++ E
Sbjct: 130 ESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLEL 189
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
+ V + +F CG ME + F +
Sbjct: 190 VSHVHNASIHMFASCGDMENARKV------------------------------FDESPV 219
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+DLVSWN ++ GY G E+ + ME ++P+ +++ G++++C+ + + GK
Sbjct: 220 RDLVSWNCLINGYKKIGEAEKAIYVYKLME--SEGVKPDDVTMIGLVSSCSMLGDLNRGK 277
Query: 219 AIHGYV----LRHHIHLSTA--------------------------------------CG 236
+ YV LR I L A CG
Sbjct: 278 EFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCG 337
Query: 237 FVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296
+ S +F+ + +DVV+WN++I V++ + DAL L +++ +N KP+ +T++ L
Sbjct: 338 LLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLS 397
Query: 297 ACLKLAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
AC +L AL G+ ++ +L+DMY +CG I ++ +F + +N ++
Sbjct: 398 ACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLT 457
Query: 346 WNVMI 350
+ +I
Sbjct: 458 YTAII 462
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 134/284 (47%), Gaps = 38/284 (13%)
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYA-----------KCRYLKVSHCKF 153
PLL L KC + +++ ++N ++D +A + RYL S
Sbjct: 55 PLLSLLEKCKLLL----HLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKIL 110
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM-EMIQTDMQPNTISLSGVLAACAQVK 212
I+ ++ SWN + G++ +E L +M + +P+ + + CA ++
Sbjct: 111 KGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLR 170
Query: 213 GVKLGKAIHGYVLR---------HH--IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
LG I G+VL+ H+ IH+ +CG + + VF++ RD+V WN +I+
Sbjct: 171 LSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLIN 230
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW------ 315
+ + G+ A+ + + + VKP+ VT++ ++ +C L L +G +V
Sbjct: 231 GYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRM 290
Query: 316 -----NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
NAL+DM+ +CG I ++R+IF + + +VSW MIS Y
Sbjct: 291 TIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYA 334
Score = 37.7 bits (86), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 24/149 (16%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+++GI +H ++ + L LG+ L++++ +T+++G
Sbjct: 405 LDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGG 464
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ G ++ F MID G+ PD + AC + G+D + M S +F N
Sbjct: 465 LALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKS-RFNLN 523
Query: 100 ACVKR--PLLDLFIKCGRMEITSGLFEEM 126
+K ++DL + G +E L E M
Sbjct: 524 PQLKHYSIMVDLLGRAGLLEEADRLMESM 552
>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
Length = 1091
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 168/345 (48%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ + G E + LF M +G D V AC++ + + G+ V+ Y
Sbjct: 485 SWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGY- 543
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ +GL E + N+L+D Y+ C + ++
Sbjct: 544 -------------------------SVKTGLIGETS----LANALLDMYSNCSDWQSTNQ 574
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + QK++VSW AM+ Y G ++V LL EM + ++P+ +++ L A A
Sbjct: 575 IFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEM--VLDGIRPDVFAVTSALHAFAGD 632
Query: 212 KGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ +K GK++HGY +R+ + + C V + +F++++ +DV+ WN++I
Sbjct: 633 ESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLI 692
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTG-- 311
+ R+ ++ L D+++ +PN VT+ +LPA +++L +G L G
Sbjct: 693 GGYSRNNFPNESFSLFSDMLL-QFRPNAVTMTCILPAAASISSLERGREIHAYALRRGFL 751
Query: 312 --SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
S+ NAL+DMY +CGA+ +R +F + KNL+SW +MI+ YG
Sbjct: 752 EDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYG 796
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 130/278 (46%), Gaps = 44/278 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ Y G ++++ L M+ G+RPD F A + + + GK V+ Y
Sbjct: 586 SWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYT 645
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I M++ V N+L++ Y KCR ++ +
Sbjct: 646 IR------------------------------NGMEKLLPVANALMEMYVKCRNVEEARL 675
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ KD++SWN ++ GY+ F E +L +M ++Q +PN ++++ +L A A +
Sbjct: 676 IFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDM-LLQ--FRPNAVTMTCILPAAASI 732
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ G+ IH Y LR + + CG ++ + +F++L+ ++++ W +I
Sbjct: 733 SSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMI 792
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ + G A+ L + + ++P+ + ++L AC
Sbjct: 793 AGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYAC 830
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 154/345 (44%), Gaps = 45/345 (13%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+G G++ V+LF M +G V AC+ L +GK V+ Y
Sbjct: 272 SWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGY- 330
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
VK LL G + SG+ D + + L+ Y KC + +
Sbjct: 331 ---------SVKSGLL-----WGLDSVQSGI-----DDAALGSKLVFMYVKCGDMASARR 371
Query: 152 KFSKIKQKDLVS-WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + K V WN ++ GYA G EE +L ++M + + P+ ++S +L
Sbjct: 372 VFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLF--VQMHELGIAPDEHAISCLLKCITC 429
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTA-CGFVIC----------SCSVFNQLSTRDVVVWNSI 259
+ + G HGY+++ A C +I + VFN++ +D + WNS+
Sbjct: 430 LSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSV 489
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGL 308
IS +G +A++L + + ++VT++SVLPAC + ++ GL
Sbjct: 490 ISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGL 549
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ + NAL+DMY C Q + +IF M KN+VSW MI+ Y
Sbjct: 550 IGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSY 594
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 149/354 (42%), Gaps = 69/354 (19%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WTS+M Y G ++E V+LF M GV PD V K S L G
Sbjct: 172 WTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGSLTEG-------- 223
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD--QDFLVNNSLIDFYAKCRYLKVSH 150
E+ GL E++ Q V N+LI Y++C ++ +
Sbjct: 224 ------------------------EVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAA 259
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + +D +SWN+M+ G G+ +L +M T++ +++++ VL ACA
Sbjct: 260 RVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEI--SSVTVLSVLPACAG 317
Query: 211 VKGVKLGKAIHGYVLRHH---------------------IHLSTACGFVICSCSVFNQLS 249
+ +GKA+HGY ++ + + CG + + VF+ +S
Sbjct: 318 LGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMS 377
Query: 250 TR-DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP--ACLKLAA--- 303
++ +V VWN I+ + + G+ ++L L + + P+ I +L CL A
Sbjct: 378 SKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGL 437
Query: 304 ------LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ G G V NALI Y + I + +F MP ++ +SWN +IS
Sbjct: 438 VAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVIS 491
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 117/258 (45%), Gaps = 37/258 (14%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQK--DLVSWNAMLAGYALGGFREEVTNLLDEME 188
++ L+ Y KC L + F + + D+ W ++++ YA G +E +L +M+
Sbjct: 137 VLGKRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQ 196
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY-----------VLRHHIHLSTACGF 237
+ P+ ++S VL + + + G+ IHG V I + + CG
Sbjct: 197 CC--GVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGR 254
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ + VF+ + RD + WNS+I +G A+DL + + ++VT++SVLPA
Sbjct: 255 MEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPA 314
Query: 298 CLKLA-----------ALPQGLGTG----------SFVWNALIDMYGRCGAIQKSRKIFV 336
C L ++ GL G + + + L+ MY +CG + +R++F
Sbjct: 315 CAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFD 374
Query: 337 LMPHK-NLVSWNVMISVY 353
M K N+ WN+++ Y
Sbjct: 375 AMSSKGNVHVWNLIMGGY 392
>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
Length = 957
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 163/344 (47%), Gaps = 53/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ + G Y E + ++ M D G +PD + A + + G ++ Y
Sbjct: 350 SWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYA 409
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ +GL D D V NSL+D YAK +K C
Sbjct: 410 MK--------------------------NGL----DSDLQVGNSLVDMYAKFCSMKYMDC 439
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K+ KD+VSW ++AG+A G L E+++ D+ + + +S +L AC+ +
Sbjct: 440 IFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDL--DVMMISSILLACSGL 497
Query: 212 KGVKLGKAIHGYVLRHH----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
K + K IH Y++R + + CG V + +F + +DVV W S+IS
Sbjct: 498 KLISSVKEIHSYIIRKGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMIS 557
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-------- 313
+V +G +AL+L + V+P+++++VS+L A L+AL +G F
Sbjct: 558 CYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVL 617
Query: 314 ---VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + L+DMY RCG ++KSR +F + +K+LV W MI+ YG
Sbjct: 618 EGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYG 661
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 104/393 (26%), Positives = 171/393 (43%), Gaps = 77/393 (19%)
Query: 4 GIQVHAHLIVCGVELCA-FLGSQLL---------------------EVFCNWTSMMGMYN 41
G QVHAH+I + FL ++L+ + W +M+G Y
Sbjct: 97 GQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYV 156
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G + L+ M G+ D P + KAC LKD R G +V+
Sbjct: 157 TNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHG------------ 204
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK-D 160
L IK G + I V NS++ Y KC L + F ++ +K D
Sbjct: 205 -------LAIKEGYVSIV-----------FVANSIVGMYTKCNDLNGARQLFDRMPEKED 246
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+VSWN+M++ Y+ G E L EM+ + + PNT + L AC +K G I
Sbjct: 247 VVSWNSMISAYSSNGQSIEALRLFGEMQ--KASLAPNTYTFVAALQACEDSSFIKQGMFI 304
Query: 221 HGYVLR--HHIHLSTACGFVIC---------SCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H VL+ ++I++ A + + ++F + D + WNS++S FV++G
Sbjct: 305 HATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLY 364
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNAL 318
+AL ++ A KP+ V ++S++ A + A+ GL + V N+L
Sbjct: 365 HEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSL 424
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+DMY + +++ IF MP K++VSW +I+
Sbjct: 425 VDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIA 457
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 155/336 (46%), Gaps = 65/336 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEV---FCN------------------WTSMMGMYNV 42
G+Q+HA+ + G++ +G+ L+++ FC+ WT+++ +
Sbjct: 402 GMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQ 461
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G + + LF + +G+ D + + ACS LK K+++ Y+I
Sbjct: 462 NGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYII---------- 511
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
GL D ++ N ++D Y +C + + F I+ KD+V
Sbjct: 512 ----------------RKGL-----SDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVV 550
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW +M++ Y G E L M+ +T ++P++ISL +L+A A + +K GK IHG
Sbjct: 551 SWTSMISCYVHNGLANEALELFHLMK--ETGVEPDSISLVSILSAAASLSALKKGKEIHG 608
Query: 223 YVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+++R + + CG + S +VFN + +D+V+W S+I+A+ G
Sbjct: 609 FLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRA 668
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
A+DL R + ++ P+ + V+VL AC + +G
Sbjct: 669 AIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEG 704
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 101/205 (49%), Gaps = 28/205 (13%)
Query: 177 REEVTNLLDEMEMIQTDMQPNTISL----SGVLAACAQVKGVKLGKAIHGYV-----LRH 227
R V + + + P+ SL S VL C K + G+ +H ++ L +
Sbjct: 53 RGSVNEAFQSLTDLFANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFN 112
Query: 228 HIHLST-------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280
+ LST CG ++ + +F+ + + + WN++I A+V +G+ + +L+L R++
Sbjct: 113 SVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMR 172
Query: 281 VANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQ 329
V+ + + T +L AC L A+ +G + FV N+++ MY +C +
Sbjct: 173 VSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLN 232
Query: 330 KSRKIFVLMPHK-NLVSWNVMISVY 353
+R++F MP K ++VSWN MIS Y
Sbjct: 233 GARQLFDRMPEKEDVVSWNSMISAY 257
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 17/105 (16%)
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTI----VSVLPACLKLAALPQG------------L 308
+ G V +A L D + AN P+ ++ SVL C AL +G L
Sbjct: 52 KRGSVNEAFQSLTD-LFANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNAL 110
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
F+ L+ MYG+CG + + K+F MPHK + +WN MI Y
Sbjct: 111 FNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAY 155
>gi|302820510|ref|XP_002991922.1| hypothetical protein SELMODRAFT_134446 [Selaginella moellendorffii]
gi|300140308|gb|EFJ07033.1| hypothetical protein SELMODRAFT_134446 [Selaginella moellendorffii]
Length = 690
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 103/392 (26%), Positives = 182/392 (46%), Gaps = 83/392 (21%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G +HAH++ G FLG+ L+ ++ +WT M+G +
Sbjct: 55 GRYIHAHILASGKSGKTFLGNLLVRMYGKCGSIADAKEAFDQIHRKNVFSWTIMLGAFAD 114
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G++ + + +++ M+ +GVRPD + CSEL+ ++ GK ++D CV
Sbjct: 115 CGHHRQAIQIYHAMVLEGVRPDCVAFASIAGICSELQCFQAGKAIHD-----------CV 163
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L + + D +V N+L+ Y+KC + + C F +IK K+ +
Sbjct: 164 -------------------LEQGAESDVIVANNLVTMYSKCGRIDGARCVFRRIKNKNPI 204
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SWNAM+A +A G + +E+ P+ I+L ACA + + G+ IH
Sbjct: 205 SWNAMIAAFAQCG------DFASALELYVEHPVPDKITLILAAKACASLGDLDRGREIHA 258
Query: 223 Y-----------VLRHHIHLSTACGFVICSCSVFNQLST--RDVVVWNSIISAFVRSGQV 269
V I + C V + +F+ L RDV+ WNSII+A++ +G
Sbjct: 259 RAVELGLESDLLVANSLIGMYGKCYCVGDAKRLFDGLEAKNRDVISWNSIIAAYILAGMS 318
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTGSF-----VWNAL 318
AL+L R+ + +V+PN +T ++++ AC L L QG + + F V N L
Sbjct: 319 SQALELFRERM--DVEPNRITFIALIDACSTLCDLEQGRWIHERIRSSEFAREVAVENGL 376
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ MY +CG+I+++ IF M + ++ +++I
Sbjct: 377 LLMYAKCGSIEEAMAIFESMEGRRTLATSLVI 408
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/336 (24%), Positives = 161/336 (47%), Gaps = 44/336 (13%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ Y + G + + LF +D V P+ + ACS L D G+ +++ +
Sbjct: 304 SWNSIIAAYILAGMSSQALELFRERMD--VEPNRITFIALIDACSTLCDLEQGRWIHERI 361
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
S +F V+ LL ++ KCG +E +FE M+ + SL+ Y K + +
Sbjct: 362 RSSEFAREVAVENGLLLMYAKCGSIEEAMAIFESMEGRRTLATSLVIMYCKFGCVADAMA 421
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDM---QPNTISLSGVLAAC 208
FS ++ +D+V+W AM+ ++ ++E T++ Q D+ +P+ ++ + VL +
Sbjct: 422 VFSGMRSRDVVAWTAMITAFS----QQEHTSMEAVDYFCQMDLDGSKPDEVTFASVLGSI 477
Query: 209 AQVKGVKLGKAIHGYVL----RHHIHLSTA-------CGFVICSCSVFNQL-STRDVVVW 256
A++ + G+++H VL + + + TA CG +I + F+ L +R++V W
Sbjct: 478 ARLGLLSRGRSVHCDVLACGFQSDVVVGTALLDMYSKCGSLIDAKRAFDDLGGSRNLVSW 537
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN 316
N++I+A + G +L R +I+ V+PN VT ++L C + G +W+
Sbjct: 538 NAMIAAMAKHGDWSSGFELYRAMILEGVRPNDVTFTNMLFLCSHGGGGDRECG----IWD 593
Query: 317 A-------------------LIDMYGRCGAIQKSRK 333
A ++D+ GR G ++++ +
Sbjct: 594 ACASIVLEFGVKITPDHHCSIVDVLGRSGRLEEAEE 629
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 22/186 (11%)
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVI 239
D+ + + +L C + K + G+ IH ++L + + CG +
Sbjct: 29 HKDLDVDNDVYATLLRECERSKSLSQGRYIHAHILASGKSGKTFLGNLLVRMYGKCGSIA 88
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ F+Q+ ++V W ++ AF G A+ + +++ V+P+ V S+ C
Sbjct: 89 DAKEAFDQIHRKNVFSWTIMLGAFADCGHHRQAIQIYHAMVLEGVRPDCVAFASIAGICS 148
Query: 300 KLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
+L L QG + V N L+ MY +CG I +R +F + +KN +SWN
Sbjct: 149 ELQCFQAGKAIHDCVLEQGAESDVIVANNLVTMYSKCGRIDGARCVFRRIKNKNPISWNA 208
Query: 349 MISVYG 354
MI+ +
Sbjct: 209 MIAAFA 214
>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
Length = 787
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 158/330 (47%), Gaps = 55/330 (16%)
Query: 48 EIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPL 106
E V F M+ D VRPD V A +E+ D +G+ V+ +
Sbjct: 194 EAVESFARMVCDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAE-------------- 239
Query: 107 LDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNA 166
KCG E L LI Y+KC ++ + C F +++ DLV++NA
Sbjct: 240 -----KCGLAEHEHVL-----------TGLISLYSKCGDVESARCLFDMMEKPDLVAYNA 283
Query: 167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR 226
+++GY++ G NL E++ + PN+ +L ++ + L + +HG+VL+
Sbjct: 284 LISGYSVNGMVGSSVNLF--TELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLK 341
Query: 227 H----HIHLSTACGFVICSCS-------VFNQLSTRDVVVWNSIISAFVRSGQVVDALDL 275
+ +STA + C + F+ + + + WN++IS + ++G A+ L
Sbjct: 342 SGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVAL 401
Query: 276 LRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGR 324
++ NV+PN +TI S L AC +L AL G L +V ALIDMY +
Sbjct: 402 FEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTALIDMYAK 461
Query: 325 CGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
CG+I ++R+IF M +KN+VSWN MI+ YG
Sbjct: 462 CGSISEARRIFNTMDNKNVVSWNAMIAGYG 491
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 148/330 (44%), Gaps = 55/330 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
+ +++ Y+V G VNLF ++ G+ P+ + S + + ++ +++
Sbjct: 281 YNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVL 340
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F N+ V + L + ME F+ M
Sbjct: 341 KSGFTANSPVSTAITTLHCRLNDMESARKAFDTM-------------------------- 374
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
+K + SWNAM++GYA G E L ++M ++ +++PN I++S L+ACAQ+
Sbjct: 375 ----PEKTMESWNAMISGYAQNGLTEMAVALFEQM--VKLNVRPNPITISSTLSACAQLG 428
Query: 213 GVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ LGK +H YV+ I + CG + + +FN + ++VV WN++I+
Sbjct: 429 ALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIA 488
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-----TGSFVWN 316
+ GQ +AL L +D++ A++ P + T +SVL AC + +G T + N
Sbjct: 489 GYGLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAIN 548
Query: 317 A-------LIDMYGRCGAIQKSRKIFVLMP 339
++D+ GR G ++++ ++ P
Sbjct: 549 PGIEHCTCMVDLLGRAGQLKEAFELISEFP 578
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 110/232 (47%), Gaps = 29/232 (12%)
Query: 147 KVSHCK--FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGV 204
+V H + F + D V WN +LAG + E ++ ++P+ +L+ V
Sbjct: 164 RVDHARKVFDTVPSPDTVLWNTLLAGLSGSEAVESFARMV-----CDGSVRPDATTLASV 218
Query: 205 LAACAQVKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDV 253
L A A+V V +G+ +H + L H H+ T CG V + +F+ + D+
Sbjct: 219 LPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDL 278
Query: 254 VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP-----------ACLKLA 302
V +N++IS + +G V +++L +++ + PN+ T+V+++P CL
Sbjct: 279 VAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGF 338
Query: 303 ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L G S V A+ ++ R ++ +RK F MP K + SWN MIS Y
Sbjct: 339 VLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYA 390
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 100/256 (39%), Gaps = 53/256 (20%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G E V LF M+ VRP+ AC++L +GK ++ +
Sbjct: 381 SWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRII 440
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
E N V L+D++ KCG + +F MD
Sbjct: 441 TEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMD------------------------ 476
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
K++VSWNAM+AGY L G E L +M+ + P + + VL AC+
Sbjct: 477 ------NKNVVSWNAMIAGYGLHGQGAEALKLYK--DMLDAHLLPTSATFLSVLYACSHG 528
Query: 212 KGVKLG-KAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
V+ G K + I+ G C+C ++ R+GQ+
Sbjct: 529 GLVEEGWKVFRSMTDDYAIN----PGIEHCTC----------------MVDLLGRAGQLK 568
Query: 271 DALDLLRDVIVANVKP 286
+A +L+ + + V P
Sbjct: 569 EAFELISEFPKSAVGP 584
>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Vitis vinifera]
Length = 825
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 102/397 (25%), Positives = 176/397 (44%), Gaps = 75/397 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF--CN-------------------WTSMMGM 39
+E G Q+HA+++ G E+ + + L++ + CN WT+M+
Sbjct: 246 LEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISG 305
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y + E + LF M G +PD F C V +C + G+ V+ Y I E +
Sbjct: 306 YMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESD 365
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
VK N LID YAK L + F + ++
Sbjct: 366 EFVK------------------------------NGLIDMYAKSNLLIDAKKVFDVMAEQ 395
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+++S+NAM+ GY+ E L EM + P+ ++ +L A + ++L K
Sbjct: 396 NVISYNAMIEGYSSQEKLSEALELFHEMRV--RLFPPSLLTFVSLLGVSASLFALELSKQ 453
Query: 220 IHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IHG +++ + L + C +V + VF +++ +D+VVWN++ + + +
Sbjct: 454 IHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLE 513
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNA 317
+AL L + + KPN T +++ A LA+L G L FV NA
Sbjct: 514 NEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNA 573
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L+DMY +CG+I+++RK+F +++V WN MIS +
Sbjct: 574 LVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHA 610
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/391 (25%), Positives = 175/391 (44%), Gaps = 76/391 (19%)
Query: 7 VHAHLIVCGVELCAFLGSQLLEV---------------------FCNWTSMMGMYNVLGY 45
+H +IV G++ FL + L+ V W+SM+ MY+ GY
Sbjct: 49 IHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGY 108
Query: 46 YEEIVNLFY-LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
EE + +F L G P+ FV V +AC++L G ++ +++ F+ + V
Sbjct: 109 SEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGT 168
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
L+D + K G +E + R + F ++ +K V+W
Sbjct: 169 SLIDFYSKNGNIE------------------------EARLV------FDQLSEKTAVTW 198
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
++AGY G L +M +T++ P+ +S VL+AC+ ++ ++ GK IH YV
Sbjct: 199 TTIIAGYTKCGRSAVSLELFAQMR--ETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYV 256
Query: 225 LRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
LR + T C V +F+Q+ ++++ W ++IS ++++ +A+
Sbjct: 257 LRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAM 316
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMY 322
L ++ KP+ SVL +C AL QG L + FV N LIDMY
Sbjct: 317 KLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMY 376
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ + ++K+F +M +N++S+N MI Y
Sbjct: 377 AKSNLLIDAKKVFDVMAEQNVISYNAMIEGY 407
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 90/396 (22%), Positives = 170/396 (42%), Gaps = 75/396 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q+H ++ G + ++G+ L++ + WT+++
Sbjct: 145 VEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAG 204
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G + LF M + V PD +V V ACS L+ GK ++ Y++ E +
Sbjct: 205 YTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMD 264
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V L+D + KC R++ LF++M K
Sbjct: 265 VSVVNVLIDFYTKCNRVKAGRKLFDQM------------------------------VVK 294
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+++SW M++GY F E L EM + +P+ + + VL +C + ++ G+
Sbjct: 295 NIISWTTMISGYMQNSFDWEAMKLFGEMNRL--GWKPDGFACTSVLTSCGSREALEQGRQ 352
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H Y ++ + I + +I + VF+ ++ ++V+ +N++I + +
Sbjct: 353 VHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEK 412
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNA 317
+ +AL+L ++ V P+ +T VS+L L AL G+ F +A
Sbjct: 413 LSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSLDLFAGSA 472
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
LID+Y +C ++ +R +F M K++V WN M Y
Sbjct: 473 LIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGY 508
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 138/273 (50%), Gaps = 28/273 (10%)
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+ P++ I G++ I SGL D + N LI+ +K + + F K+ K+L+
Sbjct: 40 RNPIIHYKIIHGQI-IVSGL----QSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLI 94
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+W++M++ Y+ G+ EE + +++ ++ PN L+ V+ AC Q+ V+ G +HG
Sbjct: 95 TWSSMVSMYSQQGYSEEALMVFVDLQR-KSGEHPNEFVLASVIRACTQLGVVEKGAQLHG 153
Query: 223 YVLR----HHIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+V+R +++ T+ G + + VF+QLS + V W +II+ + + G+
Sbjct: 154 FVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAV 213
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW-----------NALID 320
+L+L + NV P+ + SVL AC L L G ++V N LID
Sbjct: 214 SLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLID 273
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
Y +C ++ RK+F M KN++SW MIS Y
Sbjct: 274 FYTKCNRVKAGRKLFDQMVVKNIISWTTMISGY 306
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 87/381 (22%), Positives = 164/381 (43%), Gaps = 46/381 (12%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKG 60
+E G QVHA+ I +E F+ + L++++ ++ V E + Y + +G
Sbjct: 347 LEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEG 406
Query: 61 VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC------VKRPLLDLFIKCG 114
K+ +A + RV + + G + + + + L IK G
Sbjct: 407 YSSQE----KLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFG 462
Query: 115 RMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALG 174
+ D ++LID Y+KC Y+K + F ++ +KD+V WNAM GY
Sbjct: 463 -----------VSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQH 511
Query: 175 GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG-----------Y 223
EE L ++ + +PN + + ++ A + + ++ G+ H +
Sbjct: 512 LENEEALKLYSTLQF--SRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPF 569
Query: 224 VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283
V + + CG + + +FN RDVV WNS+IS + G+ +AL + R+++
Sbjct: 570 VTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEG 629
Query: 284 VKPNTVTIVSVLPACLKLAALPQGLG-----------TGSFVWNALIDMYGRCGAIQKSR 332
++PN VT V+VL AC + GL G+ + ++ + GR G + +++
Sbjct: 630 IQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPGFGIKPGTEHYACVVSLLGRSGKLFEAK 689
Query: 333 KIFVLMP-HKNLVSWNVMISV 352
+ MP + W ++S
Sbjct: 690 EFIEKMPIEPAAIVWRSLLSA 710
>gi|225444117|ref|XP_002266487.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 553
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 97/390 (24%), Positives = 176/390 (45%), Gaps = 50/390 (12%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNV 42
G +VHAH+ G++ ++G+ LL ++ +W +++G YN
Sbjct: 93 GKEVHAHVTKTGLDSDVYVGNALLHLYGSTGQVTDARRLFDGMPHRDLASWNTLLGAYND 152
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
E++ LF M+ +G+ DH V+ AC ++ GK+V+ Y+I + +
Sbjct: 153 NAV--EVLVLFKRMMYEGIGGDHISMVIVFSACGKIGGTEFGKEVHGYVIKVGIRPALSL 210
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMD--QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
LL ++ KCG M+ LF EM +D + + L + Y + ++ F ++ KD
Sbjct: 211 SNALLGVYTKCGEMDAAQSLFVEMAAMRDVVSHTILFNGYVDMGSIDLARGIFDQMSVKD 270
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
LVSWN+M+ Y ++ L +ME ++P+ ++ VLAACA + ++ G+
Sbjct: 271 LVSWNSMIHAYVKAKHPKKAIELFRKME--NEMVEPDETTMVSVLAACASLADLQNGRLA 328
Query: 221 HGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H ++++++ I + CG + + F ++ +RDV W + I G
Sbjct: 329 HRFIIQNNPRQDLFVGTALIDMYAKCGSLEEAMVTFYKMDSRDVFTWTTAIEGLANHGHG 388
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA------------ 317
AL L ++ +KPN T VSVL AC + + +G + A
Sbjct: 389 DKALSLFTEMEKQGIKPNQATFVSVLMACSRSGLVKEGCLLFKRMVEAYQIQPKIEHLGC 448
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
L+D+ R G + ++ + LMP K + N
Sbjct: 449 LLDILSRAGLLHQAEEFIKLMPPKEKIIAN 478
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 140/345 (40%), Gaps = 88/345 (25%)
Query: 61 VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITS 120
V PD + P + KAC + GK+V+ ++ K G
Sbjct: 70 VFPDKYTYPAMLKACWRMGSLSKGKEVHAHVT-------------------KTG------ 104
Query: 121 GLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEV 180
+D D V N+L+ Y + + F + +DL SWN +L Y EV
Sbjct: 105 -----LDSDVYVGNALLHLYGSTGQVTDARRLFDGMPHRDLASWNTLLGAYNDNAV--EV 157
Query: 181 TNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL----RHHIHLSTACG 236
L M + + + IS+ V +AC ++ G + GK +HGYV+ R + LS A
Sbjct: 158 LVLFKRM--MYEGIGGDHISMVIVFSACGKIGGTEFGKEVHGYVIKVGIRPALSLSNALL 215
Query: 237 FVICSCS---------------------------------------VFNQLSTRDVVVWN 257
V C +F+Q+S +D+V WN
Sbjct: 216 GVYTKCGEMDAAQSLFVEMAAMRDVVSHTILFNGYVDMGSIDLARGIFDQMSVKDLVSWN 275
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS----- 312
S+I A+V++ A++L R + V+P+ T+VSVL AC LA L G
Sbjct: 276 SMIHAYVKAKHPKKAIELFRKMENEMVEPDETTMVSVLAACASLADLQNGRLAHRFIIQN 335
Query: 313 ------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
FV ALIDMY +CG+++++ F M +++ +W I
Sbjct: 336 NPRQDLFVGTALIDMYAKCGSLEEAMVTFYKMDSRDVFTWTTAIE 380
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 20/130 (15%)
Query: 244 VFNQLSTRDVVV--------WNSIISAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSV 294
VF+Q+ T+ + WN +I AF RS + A+ + I V P+ T ++
Sbjct: 21 VFDQVLTQTITTAFIHATPTWNCLIRAFSRSPTPITAILIYNHFIKGRFVFPDKYTYPAM 80
Query: 295 LPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
L AC ++ +L +G L + +V NAL+ +YG G + +R++F MPH++L
Sbjct: 81 LKACWRMGSLSKGKEVHAHVTKTGLDSDVYVGNALLHLYGSTGQVTDARRLFDGMPHRDL 140
Query: 344 VSWNVMISVY 353
SWN ++ Y
Sbjct: 141 ASWNTLLGAY 150
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 86/212 (40%), Gaps = 56/212 (26%)
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSV 244
P+ + +L AC ++ + GK +H +V + +HL + G V + +
Sbjct: 72 PDKYTYPAMLKACWRMGSLSKGKEVHAHVTKTGLDSDVYVGNALLHLYGSTGQVTDARRL 131
Query: 245 FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL 304
F+ + RD+ WN+++ A+ + V+ L L + ++ + + +++V V AC K+
Sbjct: 132 FDGMPHRDLASWNTLLGAY--NDNAVEVLVLFKRMMYEGIGGDHISMVIVFSACGKIGGT 189
Query: 305 PQGLGTGSFV-----------WNALIDMYGRC---------------------------- 325
G +V NAL+ +Y +C
Sbjct: 190 EFGKEVHGYVIKVGIRPALSLSNALLGVYTKCGEMDAAQSLFVEMAAMRDVVSHTILFNG 249
Query: 326 ----GAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G+I +R IF M K+LVSWN MI Y
Sbjct: 250 YVDMGSIDLARGIFDQMSVKDLVSWNSMIHAY 281
>gi|302818974|ref|XP_002991159.1| hypothetical protein SELMODRAFT_133020 [Selaginella moellendorffii]
gi|300141090|gb|EFJ07805.1| hypothetical protein SELMODRAFT_133020 [Selaginella moellendorffii]
Length = 632
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 170/346 (49%), Gaps = 36/346 (10%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT ++ Y G++ + LF+ M+ +G+R D F CS+L D G+ V
Sbjct: 25 SWTMILSAYAHNGHFHAALGLFWRMLLEGIRVDSFTLSIAITVCSDLGDLSSGQSVRAVA 84
Query: 92 ISIKFEGNACVKRPLLDLFIK-CGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ + V L++L+ K CG D +V +++ Y + L+ +
Sbjct: 85 VESGLHSDLVVATALVNLYGKSCG-----------FDSGMIVQTAVLTMYGRFGKLEQAR 133
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + ++ +V+W+A++A A G + + ME+ M+P+ ++ +LAAC
Sbjct: 134 EVFDAMPERTVVAWSALIAACAQNGCERDAFRIFRLMEL--EGMRPDHVTFVSMLAACGS 191
Query: 211 VKGVKL------GKAIHGYVLRHH--IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISA 262
++ K +V+ + + L CG + + VF++++ R++V WNS+I+
Sbjct: 192 LEEAKTIHERIAAAGYESFVMLGNSLVSLYGKCGSIQDAKHVFDKITARNIVTWNSMIAT 251
Query: 263 FVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPACLKLAALPQG-------------L 308
+ + G+ + L+L ++ VKPN +T+VS+L AC +AAL +G +
Sbjct: 252 YAQQGRGREVLELYERIMDEKLVKPNVITVVSILDACADMAALERGSEIHATHSSLSQEI 311
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ V +L+++YG+CG + +R +F + +++V+WN MI+ Y
Sbjct: 312 ESDIVVKTSLVNLYGKCGRVASARAVFDKIFARDVVAWNTMIAAYA 357
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 156/334 (46%), Gaps = 61/334 (18%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W++++ G + +F LM +G+RPDH + AC L++ K +++ +
Sbjct: 147 WSALIAACAQNGCERDAFRIFRLMELEGMRPDHVTFVSMLAACGSLEE---AKTIHERIA 203
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ +E F+ ++ NSL+ Y KC ++ +
Sbjct: 204 AAGYES-----------FV-------------------MLGNSLVSLYGKCGSIQDAKHV 233
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F KI +++V+WN+M+A YA G EV L + + M + ++PN I++ +L ACA +
Sbjct: 234 FDKITARNIVTWNSMIATYAQQGRGREVLELYERI-MDEKLVKPNVITVVSILDACADMA 292
Query: 213 GVKLGKAIHGY-------------VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
++ G IH V ++L CG V + +VF+++ RDVV WN++
Sbjct: 293 ALERGSEIHATHSSLSQEIESDIVVKTSLVNLYGKCGRVASARAVFDKIFARDVVAWNTM 352
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL-----------PACLKLAALPQGL 308
I+A+ + G A++L D+ + V PN + VS+L A +L+++ +
Sbjct: 353 IAAYAQHGHDTQAIELYWDLSLEGVTPNDSSFVSILCSISHGGRRSRDAVSQLSSIREDY 412
Query: 309 GTGSFV---WNALIDMYGRCGAIQKSRKIFVLMP 339
+ ++ L+D R G+++++ ++F MP
Sbjct: 413 TNFTPKVEHYSCLVDTLARAGSLREAEELFFAMP 446
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 119/254 (46%), Gaps = 41/254 (16%)
Query: 140 YAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI 199
Y KC ++ + F IK+ + SW +L+ YA G L M+ ++ ++
Sbjct: 2 YGKCGLVEEAKEVFDGIKRWNEYSWTMILSAYAHNGHFHAALGLF--WRMLLEGIRVDSF 59
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYVLRHHIH----LSTA--------CGF---------- 237
+LS + C+ + + G+++ + +H ++TA CGF
Sbjct: 60 TLSIAITVCSDLGDLSSGQSVRAVAVESGLHSDLVVATALVNLYGKSCGFDSGMIVQTAV 119
Query: 238 ---------VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288
+ + VF+ + R VV W+++I+A ++G DA + R + + ++P+
Sbjct: 120 LTMYGRFGKLEQAREVFDAMPERTVVAWSALIAACAQNGCERDAFRIFRLMELEGMRPDH 179
Query: 289 VTIVSVLPACLKLAALPQ------GLGTGSFVW--NALIDMYGRCGAIQKSRKIFVLMPH 340
VT VS+L AC L G SFV N+L+ +YG+CG+IQ ++ +F +
Sbjct: 180 VTFVSMLAACGSLEEAKTIHERIAAAGYESFVMLGNSLVSLYGKCGSIQDAKHVFDKITA 239
Query: 341 KNLVSWNVMISVYG 354
+N+V+WN MI+ Y
Sbjct: 240 RNIVTWNSMIATYA 253
>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 819
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 90/397 (22%), Positives = 171/397 (43%), Gaps = 75/397 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q+H + E + + L++++C +WT+M+
Sbjct: 237 LEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISG 296
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y + E + +F+ M G +PD F C + +C L G+ ++ ++I E +
Sbjct: 297 YMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEAD 356
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
VK L+D++ KC + +F+ + +D
Sbjct: 357 EYVKNALIDMYAKCEHLTEARAVFDALAED------------------------------ 386
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D +S+NAM+ GY+ E N+ M ++P+ ++ +L + ++L K
Sbjct: 387 DAISYNAMIEGYSKNRDLAEAVNIFQRMRFFS--LRPSLLTFVSLLGVSSSQLAIELSKQ 444
Query: 220 IHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IHG +++ L + C V + +VFN L +D+V+WNS+I ++ Q
Sbjct: 445 IHGLIIKSGTSLDLYAASALIDVYSKCSLVNDAKTVFNMLHYKDMVIWNSMIFGHAQNEQ 504
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWNA 317
+A+ L ++++ + PN T V+++ LA++ G+ V NA
Sbjct: 505 GEEAIKLFNQLLLSGMAPNEFTFVALVTVASTLASMFHGQQFHAWIIKAGVDNDPHVSNA 564
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
LIDMY +CG I++ R +F ++++ WN MI+ Y
Sbjct: 565 LIDMYAKCGFIKEGRMLFESTCGEDVICWNSMITTYA 601
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 87/393 (22%), Positives = 170/393 (43%), Gaps = 75/393 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ LG QVH + ++ ++G+ L+ ++ W +++
Sbjct: 136 VSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITG 195
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y +G + LF M +GVRPD FV ACS L G+ ++ Y E +
Sbjct: 196 YAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGFLEGGRQIHGYAYRSATETD 255
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V L+DL+ KC R+ LF+ M+ +
Sbjct: 256 TSVINVLIDLYCKCSRLSAARKLFDCME------------------------------YR 285
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+LVSW M++GY F E + M Q QP+ + + +L +C + + G+
Sbjct: 286 NLVSWTTMISGYMQNSFNAEAITMF--WNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQ 343
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH +V++ I + C + + +VF+ L+ D + +N++I + ++
Sbjct: 344 IHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRD 403
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPA-----CLKLAALPQGLGTGS------FVWNA 317
+ +A+++ + + +++P+ +T VS+L ++L+ GL S + +A
Sbjct: 404 LAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASA 463
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
LID+Y +C + ++ +F ++ +K++V WN MI
Sbjct: 464 LIDVYSKCSLVNDAKTVFNMLHYKDMVIWNSMI 496
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 118/247 (47%), Gaps = 23/247 (9%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D + N L+ Y+ L+ + F ++ ++LVSW ++++ Y G + +L +
Sbjct: 52 DLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQ 111
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGF 237
++ PN L+ VL AC Q K V LG+ +HG YV I+L G
Sbjct: 112 KASCEV-PNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGC 170
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ + VF+ L R V WN++I+ + + G AL+L + + V+P+ + S + A
Sbjct: 171 MDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSA 230
Query: 298 CLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
C L L G T + V N LID+Y +C + +RK+F M ++NLVSW
Sbjct: 231 CSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSW 290
Query: 347 NVMISVY 353
MIS Y
Sbjct: 291 TTMISGY 297
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/394 (22%), Positives = 165/394 (41%), Gaps = 77/394 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---NWTSMMGMYNVL-------------GYYE 47
G Q+HAH+I +E ++ + L++++ + T +++ L GY +
Sbjct: 341 GRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSK 400
Query: 48 -----EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
E VN+F M +RP + S + K ++
Sbjct: 401 NRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQIHG------------- 447
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L IK G D ++LID Y+KC + + F+ + KD+V
Sbjct: 448 ------LIIKSG-----------TSLDLYAASALIDVYSKCSLVNDAKTVFNMLHYKDMV 490
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
WN+M+ G+A EE L +++ + + M PN + ++ + + + G+ H
Sbjct: 491 IWNSMIFGHAQNEQGEEAIKLFNQL--LLSGMAPNEFTFVALVTVASTLASMFHGQQFHA 548
Query: 223 YVLRHHI----HLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
++++ + H+S A CGF+ +F DV+ WNS+I+ + + G +
Sbjct: 549 WIIKAGVDNDPHVSNALIDMYAKCGFIKEGRMLFESTCGEDVICWNSMITTYAQHGHAEE 608
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG------------TGSFVWNALI 319
AL + R + A V+PN VT V VL AC + +GL G + +++
Sbjct: 609 ALQVFRLMGEAEVEPNYVTFVGVLSACAHAGFVGEGLNHFNSMKSNYDIEPGIEHYASVV 668
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMISV 352
+++GR G + +++ MP K + W ++S
Sbjct: 669 NLFGRSGKLHAAKEFIERMPIKPAAAVWRSLLSA 702
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/324 (22%), Positives = 126/324 (38%), Gaps = 85/324 (26%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+EL Q+H +I G L + S L++V+ W SM+
Sbjct: 439 IELSKQIHGLIIKSGTSLDLYAASALIDVYSKCSLVNDAKTVFNMLHYKDMVIWNSMIFG 498
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ EE + LF ++ G+ P+ F + S L G+ + ++I
Sbjct: 499 HAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVASTLASMFHGQQFHAWII------- 551
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
K G +D D V+N+LID YAKC ++K F +
Sbjct: 552 ------------KAG-----------VDNDPHVSNALIDMYAKCGFIKEGRMLFESTCGE 588
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D++ WN+M+ YA G EE + M + +++PN ++ GVL+ACA
Sbjct: 589 DVICWNSMITTYAQHGHAEEALQVFRLMG--EAEVEPNYVTFVGVLSACAHA-------- 638
Query: 220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTR-----DVVVWNSIISAFVRSGQVVDALD 274
GFV + FN + + + + S+++ F RSG++ A +
Sbjct: 639 ----------------GFVGEGLNHFNSMKSNYDIEPGIEHYASVVNLFGRSGKLHAAKE 682
Query: 275 LLRDVIVANVKPNTVTIVSVLPAC 298
+ + +KP S+L AC
Sbjct: 683 FIERM---PIKPAAAVWRSLLSAC 703
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 159/321 (49%), Gaps = 54/321 (16%)
Query: 52 LFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111
LF M +K V+ D F V KACS +K R G+ V+ ++ F+ N V+ L+ ++
Sbjct: 108 LFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYA 167
Query: 112 KCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGY 171
CG++ + +F+ M ++ +V+WN+ML+GY
Sbjct: 168 NCGQIGVARHVFDGM------------------------------PERSIVAWNSMLSGY 197
Query: 172 ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRH 227
G +EV L ++++ ++ + +++ VL AC ++ +++G+ I Y+ LR
Sbjct: 198 TKNGLWDEVVKLF--RKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRR 255
Query: 228 HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280
+ L+T+ CG V + +F+++ RDVV W+++IS + ++ + +AL+L ++
Sbjct: 256 NNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQ 315
Query: 281 VANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNALIDMYGRCGAIQ 329
NV PN VT+VSVL +C L A G ++ LID Y +CG I
Sbjct: 316 KGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYID 375
Query: 330 KSRKIFVLMPHKNLVSWNVMI 350
+S ++F M KN+ +W +I
Sbjct: 376 RSVEVFKEMSFKNVFTWTALI 396
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/393 (23%), Positives = 175/393 (44%), Gaps = 77/393 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G QVHA ++ G + F+ + L++++ N W SM+ Y
Sbjct: 140 GEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTK 199
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G ++E+V LF +++ + D V AC L + +G+ + +Y++S N +
Sbjct: 200 NGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTL 259
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
SLID YAKC + + F ++ ++D+V
Sbjct: 260 ------------------------------TTSLIDMYAKCGQVDTARKLFDEMDKRDVV 289
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+W+AM++GYA +E NL EM+ + ++ PN +++ VL +CA + + GK +H
Sbjct: 290 AWSAMISGYAQADRCKEALNLFHEMQ--KGNVYPNEVTMVSVLYSCAMLGAYETGKWVHF 347
Query: 223 YVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
Y+ + + L+ CG++ S VF ++S ++V W ++I +G+
Sbjct: 348 YIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKM 407
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNALI 319
AL+ ++ +VKPN VT + VL AC + QG + + + ++
Sbjct: 408 ALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMV 467
Query: 320 DMYGRCGAIQKSRKIFVLMPH-KNLVSWNVMIS 351
D+ GR G ++++ + MP N V W +++
Sbjct: 468 DILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLA 500
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 117/224 (52%), Gaps = 24/224 (10%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+ I + + ++N M+ G A R LL +M + +Q + + S VL AC+++K
Sbjct: 78 FNHIDKPESSAYNVMIRGLAFK--RSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMK 135
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ G+ +H +L+ I + CG + + VF+ + R +V WNS++S
Sbjct: 136 ALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLS 195
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGT 310
+ ++G + + L R ++ ++ + VT++SVL AC +LA L +GL
Sbjct: 196 GYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRR 255
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + +LIDMY +CG + +RK+F M +++V+W+ MIS Y
Sbjct: 256 NNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYA 299
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 15/124 (12%)
Query: 243 SVFNQLSTRDVVVWNSIIS--AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
S+FN + + +N +I AF RS +AL L + + +V+ + T SVL AC +
Sbjct: 76 SIFNHIDKPESSAYNVMIRGLAFKRSPD--NALLLFKKMHEKSVQHDKFTFSSVLKACSR 133
Query: 301 LAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
+ AL +G + FV N LI MY CG I +R +F MP +++V+WN M
Sbjct: 134 MKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSM 193
Query: 350 ISVY 353
+S Y
Sbjct: 194 LSGY 197
>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
Length = 1084
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 165/345 (47%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ G E + LF M +G D V AC+ + VG+ V+ Y
Sbjct: 478 SWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGY- 536
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ +GL E + N+L+D Y+ C ++
Sbjct: 537 -------------------------SVKTGLIGETS----LANALLDMYSNCSDWHSTNQ 567
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + QK++VSW AM+ Y G ++V LL EM + ++P+ +++ VL A
Sbjct: 568 IFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEM--VLDGIKPDVFAVTSVLHGFAGD 625
Query: 212 KGVKLGKAIHGYVLRHHIH----LSTACGFVICSCS-------VFNQLSTRDVVVWNSII 260
+ +K GK++HGY +R+ + ++ A + +C VF+ ++ +D++ WN++I
Sbjct: 626 ESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLI 685
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLG 309
+ R+ ++ L D+++ KPNTVT+ +LPA ++ AL +G
Sbjct: 686 GGYSRNNFANESFSLFSDMLL-QFKPNTVTMTCILPAVASISSLERGREIHAYALRRGFL 744
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
S+ NAL+DMY +CGA+ +R +F + KNL+SW +MI+ YG
Sbjct: 745 EDSYTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYG 789
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 153/343 (44%), Gaps = 54/343 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +MG Y +EE + LF M + G+ PD + K + L R G + Y++
Sbjct: 378 WNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLV 437
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ F G C V N+LI FYAK + +
Sbjct: 438 KLGF-GTQCA-----------------------------VCNALISFYAKSNMIDNAVLV 467
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ +D +SWN++++G G E L M M ++ T L VL ACA+
Sbjct: 468 FDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTT--LLSVLPACARSH 525
Query: 213 GVKLGKAIHGYVLRH----HIHLSTACGFVICSCS-------VFNQLSTRDVVVWNSIIS 261
+G+ +HGY ++ L+ A + +CS +F ++ ++VV W ++I+
Sbjct: 526 YWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMIT 585
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-------- 313
++ R+G LL+++++ +KP+ + SVL +L QG +
Sbjct: 586 SYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEK 645
Query: 314 ---VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V NAL++MY C ++++R +F + +K+++SWN +I Y
Sbjct: 646 LLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGY 688
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 133/287 (46%), Gaps = 44/287 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ Y G ++++ L M+ G++PD F V + + + GK V+ Y
Sbjct: 579 SWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYA 638
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I M++ V N+L++ Y CR ++ +
Sbjct: 639 IR------------------------------NGMEKLLPVANALMEMYVNCRNMEEARL 668
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + KD++SWN ++ GY+ F E +L +M ++Q +PNT++++ +L A A +
Sbjct: 669 VFDHVTNKDIISWNTLIGGYSRNNFANESFSLFSDM-LLQ--FKPNTVTMTCILPAVASI 725
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ G+ IH Y LR + + CG ++ + +F++L+ ++++ W +I
Sbjct: 726 SSLERGREIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMI 785
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
+ + G DA+ L + + V+P+T + ++L AC +G
Sbjct: 786 AGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYACCHSGLTAEG 832
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 84/351 (23%), Positives = 152/351 (43%), Gaps = 64/351 (18%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WTS+M Y G ++E V+LF M GV PD V K + L G+ ++ +
Sbjct: 166 WTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLE 225
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ G AC V N+LI Y++C ++ +
Sbjct: 226 KLGL-GEACA-----------------------------VANALIALYSRCGCMEDAMQV 255
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + +D +SWN+ ++GY G+ + +L +M T++ +++++ VL ACA++
Sbjct: 256 FDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEI--SSVTVLSVLPACAELG 313
Query: 213 GVKLGKAIHGYVLRHH--------------------IHLSTACGFVICSCSVFNQLSTR- 251
+GK +HGY ++ + + CG + + VF+ + ++
Sbjct: 314 FELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKG 373
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP--ACLKLAA------ 303
+V VWN I+ + ++ + ++L L + + P+ + +L CL A
Sbjct: 374 NVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAH 433
Query: 304 ---LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ G GT V NALI Y + I + +F MPH++ +SWN +IS
Sbjct: 434 GYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVIS 484
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 150/347 (43%), Gaps = 50/347 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S + Y G+++ V+LF M +G V AC+EL VGK V+ Y
Sbjct: 266 SWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYS 325
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ L DL + SG+ D + + L+ Y KC + +
Sbjct: 326 MKSGL---------LWDL------ESVQSGI------DEALGSKLVFMYVKCGDMGSARR 364
Query: 152 KFSKIKQKDLVS-WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + K V WN ++ GYA EE L ++M + + P+ +LS +L
Sbjct: 365 VFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMH--ELGITPDEHALSCLLKCITC 422
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVICSCS-------------VFNQLSTRDVVVWN 257
+ + G HGY+++ + T C S VF+++ +D + WN
Sbjct: 423 LSCARDGLVAHGYLVK--LGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWN 480
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQ 306
S+IS +G +A++L + + + ++ T++SVLPAC + ++
Sbjct: 481 SVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKT 540
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
GL + + NAL+DMY C + +IF M KN+VSW MI+ Y
Sbjct: 541 GLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSY 587
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 120/259 (46%), Gaps = 40/259 (15%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQK--DLVSWNAMLAGYALGGFREEVTNLLDEME 188
++ L+ Y KC L + F ++ + D+ W ++++ YA G +E +L +M+
Sbjct: 131 VLGKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQ 190
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACG--------FVIC 240
+ P+ ++S VL A + + G+ IHG L + L AC + C
Sbjct: 191 CC--GVSPDAHAVSCVLKCIASLGSITEGEVIHG--LLEKLGLGEACAVANALIALYSRC 246
Query: 241 SC-----SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
C VF+ + RD + WNS IS + +G A+DL + + ++VT++SVL
Sbjct: 247 GCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVL 306
Query: 296 PACLKLA-----------ALPQGL---------GTGSFVWNALIDMYGRCGAIQKSRKIF 335
PAC +L ++ GL G + + L+ MY +CG + +R++F
Sbjct: 307 PACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVF 366
Query: 336 VLMPHK-NLVSWNVMISVY 353
MP K N+ WN+++ Y
Sbjct: 367 DAMPSKGNVHVWNLIMGGY 385
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/229 (20%), Positives = 98/229 (42%), Gaps = 54/229 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
++ G VH + I G+E + + L+E++ N W +++G
Sbjct: 628 LKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGG 687
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y+ + E +LF M+ + +P+ + A + + G++++ Y + F +
Sbjct: 688 YSRNNFANESFSLFSDMLLQ-FKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLED 746
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ L+D+++KCG + + LF+ ++ +K
Sbjct: 747 SYTSNALVDMYVKCGALLVARVLFD------------------------------RLTKK 776
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
+L+SW M+AGY + G ++ L ++M + ++P+T S S +L AC
Sbjct: 777 NLISWTIMIAGYGMHGCGKDAVALFEQMR--GSGVEPDTASFSAILYAC 823
>gi|302801247|ref|XP_002982380.1| hypothetical protein SELMODRAFT_447 [Selaginella moellendorffii]
gi|300149972|gb|EFJ16625.1| hypothetical protein SELMODRAFT_447 [Selaginella moellendorffii]
Length = 730
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 96/351 (27%), Positives = 158/351 (45%), Gaps = 69/351 (19%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W+ ++ Y G+ E +NLF M V P+ V ACS KD +G ++ +
Sbjct: 70 SWSCIIAAYGQAGHCREAINLFQRM---DVEPNEMVIVSTLAACSGAKDLALGMAIHARI 126
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+S + V LL+++ KCG +E +F++M
Sbjct: 127 LSPDLRKSVFVGTALLNMYAKCGAIEQARAVFDQM------------------------- 161
Query: 152 KFSKIKQKDLVSWNAMLAGYA-LGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
KD+VSW AM+ +A +G R+ + L MIQ +QPN ++ + AC+
Sbjct: 162 -----PHKDVVSWTAMITAFAQMGDCRQALETLEG---MIQARVQPNPVTFVAAITACSS 213
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVICS-----------CSVFNQLSTRDVVVWNSI 259
+ + G+ IH V+ +H + S SVF ++ R+ V WNS+
Sbjct: 214 REFLDRGRKIHAAVIDLGLHGDITIQNALVSMYAKGSSAEEALSVFQRMEDRNRVSWNSM 273
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC---------------LKLAAL 304
I+AF S Q A+ L + + +KP+ V+ + VL AC L+LAA+
Sbjct: 274 IAAFAASAQSCSAMGLFHGMNLEGIKPDDVSFLGVLSACSSTGCLRSCKRIHSQLELAAV 333
Query: 305 --PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
P L V N+L+ Y +CG ++ + +IF +P KN+VSW M++ Y
Sbjct: 334 HSPPDLS----VENSLVTAYAKCGDLEAAERIFQRIPGKNVVSWTAMLTAY 380
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 126/248 (50%), Gaps = 30/248 (12%)
Query: 132 VNNSLIDFYAKC---RYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
+ N LI Y KC L + F ++ +KD+VSW+ ++A Y G E NL M
Sbjct: 36 LGNLLIQMYRKCGGTSSLADARAVFDQMPKKDVVSWSCIIAAYGQAGHCREAINLFQRM- 94
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL----RHHIHLSTA-------CGF 237
D++PN + + LAAC+ K + LG AIH +L R + + TA CG
Sbjct: 95 ----DVEPNEMVIVSTLAACSGAKDLALGMAIHARILSPDLRKSVFVGTALLNMYAKCGA 150
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ + +VF+Q+ +DVV W ++I+AF + G AL+ L +I A V+PN VT V+ + A
Sbjct: 151 IEQARAVFDQMPHKDVVSWTAMITAFAQMGDCRQALETLEGMIQARVQPNPVTFVAAITA 210
Query: 298 C-----------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
C + A + GL + NAL+ MY + + +++ +F M +N VSW
Sbjct: 211 CSSREFLDRGRKIHAAVIDLGLHGDITIQNALVSMYAKGSSAEEALSVFQRMEDRNRVSW 270
Query: 347 NVMISVYG 354
N MI+ +
Sbjct: 271 NSMIAAFA 278
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/386 (25%), Positives = 182/386 (47%), Gaps = 53/386 (13%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKG 60
+ LG+ +HA ++ + F+G T+++ MY G E+ +F M K
Sbjct: 116 LALGMAIHARILSPDLRKSVFVG----------TALLNMYAKCGAIEQARAVFDQMPHKD 165
Query: 61 VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN---------ACVKRPLLDLFI 111
V + A +++ D R + + MI + + N AC R LD
Sbjct: 166 V----VSWTAMITAFAQMGDCRQALETLEGMIQARVQPNPVTFVAAITACSSREFLDRGR 221
Query: 112 KCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGY 171
K I GL D + N+L+ YAK + + F +++ ++ VSWN+M+A +
Sbjct: 222 KIHAAVIDLGLH----GDITIQNALVSMYAKGSSAEEALSVFQRMEDRNRVSWNSMIAAF 277
Query: 172 ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH- 230
A L M + ++P+ +S GVL+AC+ ++ K IH + +H
Sbjct: 278 AASAQSCSAMGLFHGMNL--EGIKPDDVSFLGVLSACSSTGCLRSCKRIHSQLELAAVHS 335
Query: 231 ---------LSTA---CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRD 278
L TA CG + + +F ++ ++VV W ++++A+ G AL+L
Sbjct: 336 PPDLSVENSLVTAYAKCGDLEAAERIFQRIPGKNVVSWTAMLTAYTFHGNGSKALELYDK 395
Query: 279 VIVANVKPNTVTIVSVLPAC-----LKLA-ALPQGLGTGSF-----VWNALIDMYGRCGA 327
++ +++P++V +++V+ A + LA L + + SF + NALI+MY RCG+
Sbjct: 396 MVGQSIQPDSVVLLNVIYAGSLVGDVGLARKLHARVASSSFMLKIQIQNALINMYARCGS 455
Query: 328 IQKSRKIFVLMPHKNLVSWNVMISVY 353
++++R++F + KNLVSWN M+ Y
Sbjct: 456 LEEARRVFDGIERKNLVSWNAMMGSY 481
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/356 (24%), Positives = 158/356 (44%), Gaps = 67/356 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ Y G + + L+ M+ + ++PD V V A S + D + + ++ +
Sbjct: 372 SWTAMLTAYTFHGNGSKALELYDKMVGQSIQPDSVVLLNVIYAGSLVGDVGLARKLHARV 431
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
S F +L + I+ N+LI+ YA+C L+ +
Sbjct: 432 ASSSF---------MLKIQIQ---------------------NALINMYARCGSLEEARR 461
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM-----IQTDMQPNTISLSGVLA 206
F I++K+LVSWNAM+ Y G+ EE L EM+ +++ ++ + + V+
Sbjct: 462 VFDGIERKNLVSWNAMMGSYVQHGYDEEAIALFSEMKTGNSKAMESGLRSSPDCIMAVIL 521
Query: 207 ACAQVKGVKL--GKAIHGYVL----------RHHIHLSTA-------CGFVICSCSVFNQ 247
CA KL G+ IH + ++ L A CG + + + F+
Sbjct: 522 LCAHAGLGKLAEGRCIHAELCAVNPEILAGSTTNVTLGNALVSMYARCGSMGDASAAFHH 581
Query: 248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
+ RD V W+S+++ + G A+ L RD+ + V+P++VT VS+L +C L Q
Sbjct: 582 MRARDTVTWSSLVAGYAHHGHAEYAILLYRDMHLEGVQPDSVTYVSILNSCSHAGLLAQA 641
Query: 308 ------------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
L W ++D+ GR G + ++ + MP ++V+WN ++
Sbjct: 642 RHFFVSMVEDHCLAAWPDHWKCMVDVLGRAGFVGRAEDVVRNMPFQPDVVAWNTLL 697
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 87/360 (24%), Positives = 150/360 (41%), Gaps = 67/360 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ + + LF+ M +G++PD V ACS R K ++ +
Sbjct: 269 SWNSMIAAFAASAQSCSAMGLFHGMNLEGIKPDDVSFLGVLSACSSTGCLRSCKRIHSQL 328
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
A V P D V NSL+ YAKC L+ +
Sbjct: 329 EL------AAVHSP----------------------PDLSVENSLVTAYAKCGDLEAAER 360
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I K++VSW AML Y G + L D+M + +QP+++ L V+ A + V
Sbjct: 361 IFQRIPGKNVVSWTAMLTAYTFHGNGSKALELYDKM--VGQSIQPDSVVLLNVIYAGSLV 418
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
V L + +H V I++ CG + + VF+ + +++V WN+++
Sbjct: 419 GDVGLARKLHARVASSSFMLKIQIQNALINMYARCGSLEEARRVFDGIERKNLVSWNAMM 478
Query: 261 SAFVRSGQVVDALDLLRDVIVANVK---------PNTVTIVSVLPACLKLAALPQGL--- 308
++V+ G +A+ L ++ N K P+ + V +L A L L +G
Sbjct: 479 GSYVQHGYDEEAIALFSEMKTGNSKAMESGLRSSPDCIMAVILLCAHAGLGKLAEGRCIH 538
Query: 309 --------------GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
T + NAL+ MY RCG++ + F M ++ V+W+ +++ Y
Sbjct: 539 AELCAVNPEILAGSTTNVTLGNALVSMYARCGSMGDASAAFHHMRARDTVTWSSLVAGYA 598
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 8/55 (14%)
Query: 308 LGTGSFV-----WNALIDMYGRCG---AIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L TG F+ N LI MY +CG ++ +R +F MP K++VSW+ +I+ YG
Sbjct: 25 LATGHFLRSVHLGNLLIQMYRKCGGTSSLADARAVFDQMPKKDVVSWSCIIAAYG 79
>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
lyrata]
gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
lyrata]
Length = 1038
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 95/353 (26%), Positives = 163/353 (46%), Gaps = 70/353 (19%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTS+M Y+ G EE+++++ M +GV + V +C LKD +G
Sbjct: 228 SWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLLKDESLG------- 280
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
R ++ IK G ++ V NSLI + + ++
Sbjct: 281 ------------RQIIGQVIKSG-----------LESKLAVENSLISMFGNMGNVDYANY 317
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F++I ++D +SWN+++A YA G EE + + + M ++ N+ ++S +L+ V
Sbjct: 318 IFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEV--NSTTVSTLLSVLGDV 375
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGF--VICSCS-----------------VFNQLSTRD 252
K G+ IHG V++ GF V+C C+ VF Q+ T+D
Sbjct: 376 DHQKWGRGIHGLVVK--------MGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKD 427
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------ 306
++ WNS++++FV G+ +DAL +L +I N VT S L AC +
Sbjct: 428 LISWNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHG 487
Query: 307 -----GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
GL + NAL+ MYG+ G + SR++ + MP +++V+WN +I Y
Sbjct: 488 LVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYA 540
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/394 (22%), Positives = 160/394 (40%), Gaps = 76/394 (19%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYN 41
LG Q+ +I G+E + + L+ +F N W S++ Y
Sbjct: 279 LGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYA 338
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G+ EE +F LM + + ++ + G+ ++ ++ + F+ C
Sbjct: 339 QNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMGFDSVVC 398
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
V LL ++ GR E +F++M KDL
Sbjct: 399 VCNTLLRMYAGAGRSEEADLVFKQM------------------------------PTKDL 428
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
+SWN+++A + G + +L MI+T N ++ + LAAC + G+ +H
Sbjct: 429 ISWNSLMASFVNDGRSLDALGIL--CSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILH 486
Query: 222 GYVL-----------RHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
G V+ + + G + S V Q+ RDVV WN++I + +
Sbjct: 487 GLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYAENEDPD 546
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GLGTGSFVWNAL 318
AL + + V V N +T+VSVL ACL L + G + V N+L
Sbjct: 547 KALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHAYIVSAGFESDEHVKNSL 606
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
I MY +CG + S+ +F + ++++++WN +++
Sbjct: 607 ITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAA 640
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 150/345 (43%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD-YRVGKDVYDY 90
+W +MM +G Y E + F M D G++P FV + AC +R G V+ +
Sbjct: 126 SWNTMMSGIVRVGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGF 185
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ + V +L L+ G + + +FEEM
Sbjct: 186 VAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM------------------------ 221
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+++VSW +++ GY+ G EEV ++ M + N++SL V+++C
Sbjct: 222 ------PDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSL--VISSCGL 273
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTAC-----------GFVICSCSVFNQLSTRDVVVWNSI 259
+K LG+ I G V++ + A G V + +FNQ+S RD + WNSI
Sbjct: 274 LKDESLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSI 333
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW---- 315
++A+ ++G + ++ + + + + N+ T+ ++L + G G V
Sbjct: 334 VAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMGF 393
Query: 316 -------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
N L+ MY G +++ +F MP K+L+SWN +++ +
Sbjct: 394 DSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASF 438
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 127/262 (48%), Gaps = 33/262 (12%)
Query: 118 ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFR 177
+ SGLF+ ++ N+L+ Y K + S ++ ++D+V+WNA++ GYA
Sbjct: 490 VVSGLFDNQ----IIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYAEN--- 542
Query: 178 EEVTNLLDEMEMIQTD-MQPNTISLSGVLAACAQVKG--VKLGKAIHGYVLR------HH 228
E+ L + ++ + + N I++ VL+AC V G ++ GK +H Y++ H
Sbjct: 543 EDPDKALAAFQTLRVEGVSANYITVVSVLSACL-VPGDLLERGKPLHAYIVSAGFESDEH 601
Query: 229 IHLS-----TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283
+ S CG + S +FN L R ++ WN+I++A G + L L+ +
Sbjct: 602 VKNSLITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAANAHHGHGEEVLKLVSKMRSFG 661
Query: 284 VKPNTVTIVSVLPACLKLAALPQG---------LG--TGSFVWNALIDMYGRCGAIQKSR 332
+ + + L A KLA L +G LG F++NA DMY +CG I +
Sbjct: 662 LSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFELDCFIFNAAADMYSKCGEIGEVV 721
Query: 333 KIFVLMPHKNLVSWNVMISVYG 354
K+ +++L SWN++IS G
Sbjct: 722 KMLPPSVNRSLPSWNILISALG 743
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/344 (22%), Positives = 140/344 (40%), Gaps = 57/344 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY-RVGKDVYDYM 91
W +++G Y ++ + F + +GV ++ V AC D GK ++ Y+
Sbjct: 532 WNALIGGYAENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHAYI 591
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+S FE + VK L+ ++ KCG + + LF +D
Sbjct: 592 VSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLD------------------------ 627
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+ +++WNA+LA A G EEV L+ +M + + S S L+A A++
Sbjct: 628 ------NRSIITWNAILAANAHHGHGEEVLKLVSKMRSFGLSL--DQFSFSEGLSAAAKL 679
Query: 212 KGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSII 260
++ G+ +HG ++ L + CG + + R + WN +I
Sbjct: 680 AVLEEGQQLHGLAVKLGFELDCFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILI 739
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN---- 316
SA R G + + +++ +KP VT VS+L AC + QGL +
Sbjct: 740 SALGRHGYFEEVCETFHEMLEMGIKPGHVTFVSLLTACSHGGLVDQGLAYYDMIAKDFGL 799
Query: 317 --------ALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMIS 351
+ID+ GR G + ++ MP K N + W +++
Sbjct: 800 EPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLA 843
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 123/251 (49%), Gaps = 33/251 (13%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
L N+LI+ Y K +K + F K+ ++ VSWN M++G G L+ ME
Sbjct: 94 LHTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIVRVGL------YLEGMEFF 147
Query: 191 QT----DMQPNTISLSGVLAACAQVKGV-KLGKAIHGYV----LRHHIHLSTAC------ 235
Q ++P++ ++ ++ AC + + + G +HG+V L +++STA
Sbjct: 148 QKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGV 207
Query: 236 -GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV 294
G V CS VF ++ R+VV W S++ + G+ + +D+ + + V+ N ++ V
Sbjct: 208 YGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLV 267
Query: 295 LPAC--LKLAALPQ---------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
+ +C LK +L + GL + V N+LI M+G G + + IF + ++
Sbjct: 268 ISSCGLLKDESLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQISERDT 327
Query: 344 VSWNVMISVYG 354
+SWN +++ Y
Sbjct: 328 ISWNSIVAAYA 338
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 83/168 (49%), Gaps = 23/168 (13%)
Query: 209 AQVKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWN 257
+Q+ G+A+H ++ + LS T G V + +F+++ R+ V WN
Sbjct: 69 SQITRETTGRALHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWN 128
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL------------P 305
+++S VR G ++ ++ + + +KP++ I S++ AC + ++
Sbjct: 129 TMMSGIVRVGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAK 188
Query: 306 QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
GL + +V A++ +YG G + SRK+F MP +N+VSW ++ Y
Sbjct: 189 SGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGY 236
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 59/149 (39%), Gaps = 24/149 (16%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q+H + G EL F+ + +++ +W ++
Sbjct: 682 LEEGQQLHGLAVKLGFELDCFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISA 741
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
GY+EE+ F+ M++ G++P H + ACS G YD MI+ F
Sbjct: 742 LGRHGYFEEVCETFHEMLEMGIKPGHVTFVSLLTACSHGGLVDQGLAYYD-MIAKDFGLE 800
Query: 100 ACVKRPL--LDLFIKCGRMEITSGLFEEM 126
++ + +DL + GR+ +M
Sbjct: 801 PAIEHCICVIDLLGRSGRLAEAETFISKM 829
>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
Length = 726
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 92/380 (24%), Positives = 175/380 (46%), Gaps = 89/380 (23%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ G + E ++L+ ++PD + P V AC+ L D+ + K ++D ++
Sbjct: 83 WNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVL 142
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ F + + L+D++ + ++ +FEEM
Sbjct: 143 DMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEM-------------------------- 176
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDE-----MEMIQTDMQPNTISLSGVLAA 207
+D+VSWN++++GY G+ E + + MEM+ +P+ ++++ +L A
Sbjct: 177 ----PLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVN-QFKPDLLTITSILQA 231
Query: 208 CAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVW 256
C + ++ GK +H Y++ I++ CG ++ S VF+ + +D V W
Sbjct: 232 CGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSW 291
Query: 257 NSIISAFVRSGQVVDALDLL-----RDVIVAN--------------------------VK 285
NS+I+ ++++G++ D+L + RD+I N V
Sbjct: 292 NSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVT 351
Query: 286 PNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKI 334
P+ T++S+LP C LAA Q GL + V N LI+MY +CG+++ S ++
Sbjct: 352 PDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQV 411
Query: 335 FVLMPHKNLVSWNVMISVYG 354
F LM K++V+W +IS G
Sbjct: 412 FKLMKTKDVVTWTALISACG 431
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 93/405 (22%), Positives = 176/405 (43%), Gaps = 58/405 (14%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
E+ +H ++ G ++G+ L++++C +W S++ Y
Sbjct: 132 EMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGY 191
Query: 41 NVLGYYEEIVNLFYLMID------KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI 94
N GY+ E + ++Y I +PD + +AC L D GK V+DYMI+
Sbjct: 192 NANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITS 251
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKF 153
+E + L++++ KCG + + +F M +D + NS+I+ Y + + S F
Sbjct: 252 GYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVF 311
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM--EMIQTDMQPNTISLSGVLAACAQV 211
+K +D+++WN ++A E NL M M + P+ ++ +L C+ +
Sbjct: 312 ENMKARDIITWNTIIASCV----HSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLL 367
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ GK IHG + + I + + CG + S VF + T+DVV W ++I
Sbjct: 368 AAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALI 427
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
SA G+ A+ ++ A + P+ V V+++ AC + +GL +
Sbjct: 428 SACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKI 487
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMISV 352
+ ++D+ R + K+ + MP K S W ++S
Sbjct: 488 EPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSA 532
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 68/125 (54%), Gaps = 12/125 (9%)
Query: 241 SCSVFNQLS-TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
S SVF S + +V +WNSII A +G +AL L + ++P+T T SV+ AC
Sbjct: 67 SFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACA 126
Query: 300 KL-----------AALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
L L G G+ ++ NALIDMY R + K+RK+F MP +++VSWN
Sbjct: 127 GLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNS 186
Query: 349 MISVY 353
+IS Y
Sbjct: 187 LISGY 191
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 57/270 (21%), Positives = 98/270 (36%), Gaps = 86/270 (31%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLL--------------EVFC--------NWTSMMG 38
+E G VH ++I G E C S +L EVF +W SM+
Sbjct: 238 LEFGKYVHDYMITSGYE-CDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMIN 296
Query: 39 MY-------NVLGYYE--------------------EIVNLFYLMIDK----GVRPDHFV 67
+Y + L +E E NL MI + GV PD
Sbjct: 297 VYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMAT 356
Query: 68 CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD 127
+ CS L R GK+++ + + E + V L++++ KCG + + +F+ M
Sbjct: 357 MLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLM- 415
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
K KD+V+W A+++ + G ++ EM
Sbjct: 416 -----------------------------KTKDVVTWTALISACGMYGEGKKAVRAFGEM 446
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
E + P+ ++ ++ AC+ V+ G
Sbjct: 447 E--AAGIVPDHVAFVAIIFACSHSGLVEEG 474
>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Brachypodium distachyon]
Length = 802
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 94/376 (25%), Positives = 167/376 (44%), Gaps = 58/376 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT M+ N +G + E + +F M+ G+ P F V +C+ + VG+ V+ ++
Sbjct: 129 SWTVMVVGLNRVGRFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFV 188
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSH 150
+ + V +L+++ KCG E +FE M + + + N+++ A + ++
Sbjct: 189 VKLGLSSCVPVANSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLAL 248
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + + +VSWNA++AGY G + M T M P+ +++ VL+ACA
Sbjct: 249 SLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYST-MAPDEFTITSVLSACAN 307
Query: 211 VKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQ------------ 247
+ V +GK +H Y+LR I + G V + V Q
Sbjct: 308 LGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFT 367
Query: 248 ---------------------LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286
+S RDVV W ++I + ++G +A++L R +I + +P
Sbjct: 368 ALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEP 427
Query: 287 NTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIF 335
N+ T+ +VL C LA L G S V N+++ MY R G++ +R++F
Sbjct: 428 NSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVF 487
Query: 336 VLMP-HKNLVSWNVMI 350
+ K V+W MI
Sbjct: 488 DRVHWRKETVTWTSMI 503
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/350 (23%), Positives = 162/350 (46%), Gaps = 31/350 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W +++ YN G + + F M+ + PD F V AC+ L +GK V+ Y
Sbjct: 261 SWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAY 320
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM---DQDFLVNNSLIDFYAKCRYLK 147
++ + V L+ ++ K G +E G+ ++ D + + +L++ Y K +K
Sbjct: 321 ILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMK 380
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
+ F + +D+V+W AM+ GY G +E L MI++ +PN+ +++ VL+
Sbjct: 381 HAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELF--RLMIRSGPEPNSYTVAAVLSV 438
Query: 208 CAQVKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTR-DVVV 255
CA + ++ GK IH +R S++ G + + VF+++ R + V
Sbjct: 439 CASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVT 498
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW 315
W S+I A + G DA+ L +++ VKP+ +T V VL AC + + +G +
Sbjct: 499 WTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQ 558
Query: 316 NA------------LIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ ++D+ R G ++++ MP + ++W ++S
Sbjct: 559 DKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSA 608
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 126/292 (43%), Gaps = 63/292 (21%)
Query: 122 LFEEM---DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGY-ALGGFR 177
LF+E+ ++ NSL+ YAK L + F+++ ++D VSW M+ G +G F
Sbjct: 85 LFDEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFG 144
Query: 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----------- 226
E + LD M+ + P +L+ VL++CA + +G+ +H +V++
Sbjct: 145 EAIKMFLD---MVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVAN 201
Query: 227 -------------------------------HHIHLSTACGFVICSCSVFNQLSTRDVVV 255
+ L G + + S+F + R +V
Sbjct: 202 SVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVS 261
Query: 256 WNSIISAFVRSGQVVDALDLL-RDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF- 313
WN++I+ + ++G AL R + + + P+ TI SVL AC L + G ++
Sbjct: 262 WNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYI 321
Query: 314 ----------VWNALIDMYGRCGAIQKSRKIF--VLMPHKNLVSWNVMISVY 353
V NALI MY + G+++ +R + +M N++S+ ++ Y
Sbjct: 322 LRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGY 373
>gi|255585042|ref|XP_002533229.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526949|gb|EEF29150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 575
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 105/397 (26%), Positives = 183/397 (46%), Gaps = 76/397 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMY 40
++G +H +IV G+ F+GS L++++ + +M+
Sbjct: 132 KIGFSLHGRVIVDGLSSDLFVGSALVDMYFKLSREDIALKVFDKLPERDTILYNTMISGL 191
Query: 41 NVLGYYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ YE+ + LF MI G + D V A +EL++ R+G ++ I + F +
Sbjct: 192 VRVCCYEDSIRLFKYMISGNGPQFDSTTVLAVLPALAELQELRLGTEIQCLAIKLGFLSH 251
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V L+ L+ KCG ++ S L F+ I +K
Sbjct: 252 ISVVTGLISLYSKCGDVDTASIL------------------------------FTDIGRK 281
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
DL+S+NAM++G G E L +E + + + N+ S+ G++ + L
Sbjct: 282 DLISYNAMISGLTFNGETESSVRLFEEW--LDSGEKVNSSSIVGLIPVYCPFGYLPLTNC 339
Query: 220 IHGYVLRHHI--HLSTACGFVI---------CSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IHG+ ++ I H S A + +F++ S + + WN++I+ + ++G
Sbjct: 340 IHGFGVKSGIVSHSSVATALTTVYSRLNEMEAARQLFDESSEKTLASWNAMIAGYTQNGA 399
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTGSFVWN-----A 317
A+ L +++ + N+ PN VT+ S+L AC +L AL G + SF +N A
Sbjct: 400 TEKAISLFQEMQMYNISPNPVTVTSILSACAQLGALTLGKWIHGLVKFKSFEYNVYVSTA 459
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
LIDMY +CG+I ++R++F MP KN V+WN +IS YG
Sbjct: 460 LIDMYAKCGSILEARRLFDSMPEKNEVTWNAIISGYG 496
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 105/222 (47%), Gaps = 24/222 (10%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I + DL +N ++ G++ +L + TD+ P+ + + V++A
Sbjct: 71 FFTIPKPDLFLFNVLIKGFSNNNSPLSAISLFTHLRK-STDLYPDNFTYAFVVSAARNFG 129
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVIC-----------SCSVFNQLSTRDVVVWNSIIS 261
K+G ++HG V+ + G + + VF++L RD +++N++IS
Sbjct: 130 DAKIGFSLHGRVIVDGLSSDLFVGSALVDMYFKLSREDIALKVFDKLPERDTILYNTMIS 189
Query: 262 AFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPACLKLAALPQG---------LGTG 311
VR D++ L + +I N + ++ T+++VLPA +L L G LG
Sbjct: 190 GLVRVCCYEDSIRLFKYMISGNGPQFDSTTVLAVLPALAELQELRLGTEIQCLAIKLGFL 249
Query: 312 SF--VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
S V LI +Y +CG + + +F + K+L+S+N MIS
Sbjct: 250 SHISVVTGLISLYSKCGDVDTASILFTDIGRKDLISYNAMIS 291
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 84/193 (43%), Gaps = 32/193 (16%)
Query: 28 EVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDV 87
+ +W +M+ Y G E+ ++LF M + P+ + AC++L +GK +
Sbjct: 382 KTLASWNAMIAGYTQNGATEKAISLFQEMQMYNISPNPVTVTSILSACAQLGALTLGKWI 441
Query: 88 YDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147
+ VK F+ + + V+ +LID YAKC +
Sbjct: 442 H-----------GLVK-------------------FKSFEYNVYVSTALIDMYAKCGSIL 471
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
+ F + +K+ V+WNA+++GY L G +E L EM+ +QP ++ VL A
Sbjct: 472 EARRLFDSMPEKNEVTWNAIISGYGLHGLGQEALKLF--YEMLNCGIQPTRVTFLSVLYA 529
Query: 208 CAQVKGVKLGKAI 220
C+ V+ G I
Sbjct: 530 CSHAGLVREGDEI 542
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +++ Y + G +E + LFY M++ G++P V ACS R G +++ M
Sbjct: 487 TWNAIISGYGLHGLGQEALKLFYEMLNCGIQPTRVTFLSVLYACSHAGLVREGDEIFHSM 546
Query: 92 ISIKFEGNACVKRPL 106
I + GN V+ P
Sbjct: 547 IPLA--GNEEVRSPF 559
>gi|255562657|ref|XP_002522334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538412|gb|EEF40018.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 507
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 155/318 (48%), Gaps = 28/318 (8%)
Query: 62 RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSG 121
RP + + ++C + + VGK V+D++ F + LLD++ KC +
Sbjct: 77 RPSPSIYSSLIQSCLKNRALEVGKKVHDHIKLSGFIPGLVISNRLLDMYAKCNDLVDAQK 136
Query: 122 LFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEV 180
LFEEM ++D N LI AK LK + F + ++D SW AM++GY E
Sbjct: 137 LFEEMGERDLCSWNVLISGCAKMGLLKEARKLFDTMPERDNFSWTAMISGYVRHNRPHEA 196
Query: 181 TNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH---------- 230
L M+ + ++ N ++S VLAA A + +++GK IHGY++R +
Sbjct: 197 LELYRLMKKCE-NLTSNKFTVSSVLAAAAAIPCLRIGKEIHGYIMRTGLDSDEVVWSALS 255
Query: 231 -LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289
+ CG + + +F+++ RDVV W ++I + G+ + +L +++ + +KPN
Sbjct: 256 DMYGKCGSIEEARHIFDKMVNRDVVTWTAMIDRYFEDGRREEGFELFAELLRSGIKPNDF 315
Query: 290 TIVSVLPACLKLAALPQGLGTG-------------SFVWNALIDMYGRCGAIQKSRKIFV 336
T VL AC L +G+G SF +AL+ MY +CG + + ++F
Sbjct: 316 TFAGVLNACADLGV--EGIGKQVHGHMTRADFDPFSFAASALVHMYSKCGNMVNAERVFR 373
Query: 337 LMPHKNLVSWNVMISVYG 354
MP +LVSW +I+ Y
Sbjct: 374 GMPQPDLVSWTSLIAGYA 391
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 137/289 (47%), Gaps = 44/289 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+WT+M+ Y E + L+ LM + + + F V A + + R+GK+++ Y
Sbjct: 179 SWTAMISGYVRHNRPHEALELYRLMKKCENLTSNKFTVSSVLAAAAAIPCLRIGKEIHGY 238
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
++ +GL D D +V ++L D Y KC ++ +
Sbjct: 239 IM--------------------------RTGL----DSDEVVWSALSDMYGKCGSIEEAR 268
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F K+ +D+V+W AM+ Y G REE L E++++ ++PN + +GVL ACA
Sbjct: 269 HIFDKMVNRDVVTWTAMIDRYFEDGRREEGFELF--AELLRSGIKPNDFTFAGVLNACAD 326
Query: 211 VKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ +GK +HG++ R +H+ + CG ++ + VF + D+V W S+
Sbjct: 327 LGVEGIGKQVHGHMTRADFDPFSFAASALVHMYSKCGNMVNAERVFRGMPQPDLVSWTSL 386
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
I+ + ++G +AL ++ + +P+ +T V VL AC + +GL
Sbjct: 387 IAGYAQNGHPDEALQYFELLLKSGTRPDHITFVGVLSACAHAGLVDKGL 435
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 25/125 (20%)
Query: 247 QLSTRDVVVWNSIISAFVRSGQVVDALDLL-------RDVIVANV--KPNTVTIVSVLPA 297
+LS++D S I G+ +A+ LL + V N +P+ S++ +
Sbjct: 35 KLSSKD-----SFIDRLCNEGRFKEAIALLCEQNRLKEAIQVLNQIDRPSPSIYSSLIQS 89
Query: 298 CLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
CLK AL G G + N L+DMY +C + ++K+F M ++L SW
Sbjct: 90 CLKNRALEVGKKVHDHIKLSGFIPGLVISNRLLDMYAKCNDLVDAQKLFEEMGERDLCSW 149
Query: 347 NVMIS 351
NV+IS
Sbjct: 150 NVLIS 154
>gi|218197313|gb|EEC79740.1| hypothetical protein OsI_21088 [Oryza sativa Indica Group]
Length = 1068
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 170/344 (49%), Gaps = 54/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W M+G Y +G+ EE ++L+Y M+ G+RPD + P V + C + D+R+G++V+ ++
Sbjct: 164 SWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHV 223
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ G +E+D V N+L+ YAKC + +
Sbjct: 224 LRF--------------------------GFGDEVD----VLNALVTMYAKCGDIVAARK 253
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + D +SWNAM+AG+ E L + M++ ++QPN ++++ V A +
Sbjct: 254 VFDGMAMTDCISWNAMIAGHFENHECEAGLELF--LTMLENEVQPNLMTITSVTVASGML 311
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
V K +HG+ ++ I + T+ G + + +F+++ T+D + W ++I
Sbjct: 312 SEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMI 371
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV---------LPACLKLAALPQGLGTG 311
S + ++G AL++ + + NV P+ VTI S L +KL L Q G
Sbjct: 372 SGYEKNGFPDKALEVYALMELHNVNPDDVTIASALAACACLGRLDVGIKLHELAQNKGFI 431
Query: 312 SF--VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ V NAL++MY + I K+ ++F M K++VSW+ MI+ +
Sbjct: 432 RYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGF 475
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 85/340 (25%), Positives = 151/340 (44%), Gaps = 50/340 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W+SM+ + + + F M+ V+P+ AC+ R GK+++ Y+
Sbjct: 467 SWSSMIAGFCFNHRSFDALYYFRYMLGH-VKPNSVTFIAALSACAATGALRSGKEIHAYV 525
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ +CG + + V N+L+D Y KC +
Sbjct: 526 L-------------------RCG-----------IGSEGYVPNALLDLYVKCGQTSYAWA 555
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+FS +KD+VSWN ML+G+ G + +L ++M +L+
Sbjct: 556 QFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMMYTSLGRMGACSALAACACLGRLD 615
Query: 212 KGVKL-----GKAIHGYVLRHH--IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
G+KL K YV+ + + + + + VF ++ +DVV W+S+I+ F
Sbjct: 616 VGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFC 675
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSF 313
+ + DAL R ++ +VKPN+VT ++ L AC AL G+G+ +
Sbjct: 676 FNHRSFDALYYFR-YMLGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGY 734
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V NAL+D+Y +CG + F + K++VSWN+M+S +
Sbjct: 735 VPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGF 774
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 107/223 (47%), Gaps = 24/223 (10%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+K+ ++D+ SWN M+ GY GF EE +L M+ M+P+ + VL C +
Sbjct: 154 FAKMPERDVFSWNVMVGGYGKVGFLEEALDLY--YRMLWAGMRPDVYTFPCVLRTCGGIP 211
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++G+ +H +VLR + + CG ++ + VF+ ++ D + WN++I+
Sbjct: 212 DWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAMTDCISWNAMIA 271
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGT 310
+ + L+L ++ V+PN +TI SV A L+ A+ +G
Sbjct: 272 GHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAI 331
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
N+LI MY G + + KIF M K+ +SW MIS Y
Sbjct: 332 DVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGY 374
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 152/342 (44%), Gaps = 53/342 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ Y G+ ++ + ++ LM V PD
Sbjct: 366 SWTAMISGYEKNGFPDKALEVYALMELHNVNPDD-------------------------- 399
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
++I AC LD+ IK + G + +V N+L++ YAK +++ +
Sbjct: 400 VTIASALAACACLGRLDVGIKLHELAQNKGFIRYV----VVANALLEMYAKSKHIDKAIE 455
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +KD+VSW++M+AG+ F + L + ++PN+++ L+ACA
Sbjct: 456 VFKFMAEKDVVSWSSMIAGFC---FNHRSFDALYYFRYMLGHVKPNSVTFIAALSACAAT 512
Query: 212 KGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ GK IH YVLR I L CG + + F+ S +DVV WN ++
Sbjct: 513 GALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIML 572
Query: 261 SAFVRSGQVVDALDLLRDVIVANV-------KPNTVTIVSVLPACLKLAALPQGLGTGSF 313
S FV G AL L ++ ++ + L +KL L Q G +
Sbjct: 573 SGFVAHGLGDIALSLFNQMMYTSLGRMGACSALAACACLGRLDVGIKLHELAQNKGFIRY 632
Query: 314 --VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V NAL++MY + I K+ ++F M K++VSW+ MI+ +
Sbjct: 633 VVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGF 674
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 126/267 (47%), Gaps = 33/267 (12%)
Query: 114 GRMEITSGLFE-EMDQDFL----VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAML 168
GR+++ L E ++ F+ V N+L++ YAK +++ + F + +KD+VSW++M+
Sbjct: 612 GRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMI 671
Query: 169 AGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH 228
AG+ F + L + ++PN+++ L+ACA ++ GK IH YVLR
Sbjct: 672 AGFC---FNHRSFDALYYFRYMLGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCG 728
Query: 229 I-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLR 277
I L CG + + F+ S +DVV WN ++S FV G AL L
Sbjct: 729 IGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFN 788
Query: 278 DVIVANVKPNTVTIVSVLPACLKLAALPQGLG-----TGSFV-------WNALIDMYGRC 325
++ P+ VT V ++ AC + + QG T F + ++D+ R
Sbjct: 789 QMVEMGEHPDEVTFV-LMCACSRAGMVIQGWELFHRRTEKFSIVPNLKHYACMVDLLSRV 847
Query: 326 GAIQKSRKIFVLMPHK-NLVSWNVMIS 351
G + ++ + MP K + W +++
Sbjct: 848 GKLTEAYNLINRMPIKPDAAVWGALLN 874
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 25/164 (15%)
Query: 205 LAACAQVK------GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ ACA+ G++LG A+ ++R G + + VF ++ RDV WN
Sbjct: 116 MRACARADAEHPSFGLRLGNAMLSMLVRF--------GEIWHAWRVFAKMPERDVFSWNV 167
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQG 307
++ + + G + +ALDL ++ A ++P+ T VL C + L G
Sbjct: 168 MVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFG 227
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
G V NAL+ MY +CG I +RK+F M + +SWN MI+
Sbjct: 228 FGDEVDVLNALVTMYAKCGDIVAARKVFDGMAMTDCISWNAMIA 271
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/277 (20%), Positives = 117/277 (42%), Gaps = 59/277 (21%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W+SM+ + + + F M+ V+P+ AC+ R GK+++ Y+
Sbjct: 666 SWSSMIAGFCFNHRSFDALYYFRYMLGH-VKPNSVTFIAALSACAATGALRSGKEIHAYV 724
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ +CG + + V N+L+D Y KC +
Sbjct: 725 L-------------------RCG-----------IGSEGYVPNALLDLYVKCGQTSYAWA 754
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+FS +KD+VSWN ML+G+ G + +L + +M++ P+ ++ ++ AC++
Sbjct: 755 QFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFN--QMVEMGEHPDEVTFV-LMCACSRA 811
Query: 212 KGVKLGKAIHGYVLRHH-----------------IHLSTACGFVICSCSVFNQLSTR-DV 253
G I G+ L H + L + G + + ++ N++ + D
Sbjct: 812 -----GMVIQGWELFHRRTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDA 866
Query: 254 VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
VW ++++ R + V+ +L VI+ ++PN V
Sbjct: 867 AVWGALLNG-CRIHRHVELGELAAKVIL-ELEPNDVA 901
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 14/109 (12%)
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGT------ 310
++ + A GQ+ AL LL + P+ V++ C A+ G+
Sbjct: 68 SAALRALCSHGQLAQALWLLES---SPEPPDEGAYVALFRLCEWRRAVDAGMRACARADA 124
Query: 311 -----GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G + NA++ M R G I + ++F MP +++ SWNVM+ YG
Sbjct: 125 EHPSFGLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYG 173
>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Vitis vinifera]
Length = 785
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/375 (24%), Positives = 180/375 (48%), Gaps = 32/375 (8%)
Query: 7 VHAHLIVCGVELCAFLGSQLLEV-FCNWTSMMGMYNVLGYYEEIVNLFY-LMIDKGVRPD 64
+ +H+ V+L Q++E +W +M+ YN G+ E +++F +++D +PD
Sbjct: 218 ISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPD 277
Query: 65 HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFE 124
F AC+ L++ ++GK ++ ++I +F+ V L+ ++ K G +EI + E
Sbjct: 278 KFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIE 337
Query: 125 EM---DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVT 181
+ + D + +L+D Y K + + F ++ +D+V+W AM+ GY GF ++
Sbjct: 338 QSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAM 397
Query: 182 NLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IH 230
L MI+ +PN +L+ +L+ + + + G+ IH R I
Sbjct: 398 ELF--RSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALIT 455
Query: 231 LSTACGFVICSCSVFNQLS-TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289
+ G + + VFN + RD + W S+I A + G +AL L ++ +KP+ +
Sbjct: 456 MYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHI 515
Query: 290 TIVSVLPACLKLAALPQGLGTGSFVWNA------------LIDMYGRCGAIQKSRKIFVL 337
T V VL AC + + QG + + NA +ID++GR G +Q++
Sbjct: 516 TYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIEN 575
Query: 338 MP-HKNLVSWNVMIS 351
MP ++++W +++
Sbjct: 576 MPIEPDVIAWGSLLA 590
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/365 (24%), Positives = 150/365 (41%), Gaps = 90/365 (24%)
Query: 77 ELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNS 135
+ KD GK ++ +I + L++ + K G + +F+EM + N
Sbjct: 25 KFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNI 84
Query: 136 LIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ 195
++ YAK L+ +H F ++ + D VSW AM+ GY G E + EM+ D+
Sbjct: 85 ILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMF--REMVSDDVP 142
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI--HLSTA------------------- 234
P +L+ VLA+CA V+ + +G+ +H +V++H + ++S A
Sbjct: 143 PTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIV 202
Query: 235 ---------------------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
G V + F Q+ RDVV WN++IS + + G +AL
Sbjct: 203 FDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREAL 262
Query: 274 DLLRDVIV-ANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDM 321
D+ +++ ++ KP+ T+ S L AC L L G T V NALI M
Sbjct: 263 DIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISM 322
Query: 322 YGRCGAIQ---------------------------------KSRKIFVLMPHKNLVSWNV 348
Y + G ++ +R+IF + +++V+W
Sbjct: 323 YSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTA 382
Query: 349 MISVY 353
MI Y
Sbjct: 383 MIVGY 387
>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
Length = 572
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 158/304 (51%), Gaps = 18/304 (5%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W M+ Y Y+E + F M + GV D + V AC ++ R GK ++ YM
Sbjct: 138 SWGVMLDSYCQTRNYKEALLQFAKMKNSGVLSDQLILATVLSACGHIRHLRTGKSIHSYM 197
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDF-YAKCRYLKVSH 150
+ NA + L++L+ C ME+ L+ M + LV+++ + F YA+ R +++
Sbjct: 198 LVSDILINAHLSSALINLYASCASMEMAEKLYNGMPRKDLVSSTAMVFGYARNRKFEIAR 257
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + +KD+VSW+AM++GYA E +L ++M+ + ++P+ +++ V++ACA
Sbjct: 258 YIFDGMPEKDVVSWSAMISGYADSNQPNEALSLFNDMQ--ECGIRPDEVTMLSVISACAN 315
Query: 211 VKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ + K IH ++ L +H+ A CG + + ++FN++ ++V+ W S+
Sbjct: 316 LGSLDKAKWIHAFIKNNGLNKILHICNALIDMFAKCGGINLALNIFNEMPQKNVITWTSM 375
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALI 319
I+AF G AL L + V+PN VT +++L AC + +G ++++++
Sbjct: 376 ITAFAMHGDGKSALCLFEQMRNEGVEPNEVTFLNLLYACCHAGLVHEGRS----LFSSMV 431
Query: 320 DMYG 323
YG
Sbjct: 432 QQYG 435
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 129/279 (46%), Gaps = 55/279 (19%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D V +L+ YA C + + F + +D+VSW ML Y +E LL +
Sbjct: 104 DGFVRTALVGAYAACGCVGDARKVFDGMAVRDVVSWGVMLDSYCQTRNYKEA--LLQFAK 161
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI----HLSTACGFVICSCS- 243
M + + + + L+ VL+AC ++ ++ GK+IH Y+L I HLS+A + SC+
Sbjct: 162 MKNSGVLSDQLILATVLSACGHIRHLRTGKSIHSYMLVSDILINAHLSSALINLYASCAS 221
Query: 244 -------------------------------------VFNQLSTRDVVVWNSIISAFVRS 266
+F+ + +DVV W+++IS + S
Sbjct: 222 MEMAEKLYNGMPRKDLVSSTAMVFGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADS 281
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVW 315
Q +AL L D+ ++P+ VT++SV+ AC L +L + GL +
Sbjct: 282 NQPNEALSLFNDMQECGIRPDEVTMLSVISACANLGSLDKAKWIHAFIKNNGLNKILHIC 341
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
NALIDM+ +CG I + IF MP KN+++W MI+ +
Sbjct: 342 NALIDMFAKCGGINLALNIFNEMPQKNVITWTSMITAFA 380
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 11/164 (6%)
Query: 202 SGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+G A ++G G+V + ACG V + VF+ ++ RDVV W ++
Sbjct: 85 AGAYVRGAHALAFRVGSLDDGFVRTALVGAYAACGCVGDARKVFDGMAVRDVVSWGVMLD 144
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW------ 315
++ ++ +AL + + V + + + +VL AC + L G S++
Sbjct: 145 SYCQTRNYKEALLQFAKMKNSGVLSDQLILATVLSACGHIRHLRTGKSIHSYMLVSDILI 204
Query: 316 -----NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ALI++Y C +++ + K++ MP K+LVS M+ Y
Sbjct: 205 NAHLSSALINLYASCASMEMAEKLYNGMPRKDLVSSTAMVFGYA 248
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 16/76 (21%)
Query: 294 VLPACLKLAALPQGLGT------------GS----FVWNALIDMYGRCGAIQKSRKIFVL 337
LPA L+ AA G G GS FV AL+ Y CG + +RK+F
Sbjct: 71 ALPALLRSAARCVGAGAYVRGAHALAFRVGSLDDGFVRTALVGAYAACGCVGDARKVFDG 130
Query: 338 MPHKNLVSWNVMISVY 353
M +++VSW VM+ Y
Sbjct: 131 MAVRDVVSWGVMLDSY 146
>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
Length = 799
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 166/348 (47%), Gaps = 60/348 (17%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W ++ Y G YEE ++L+Y M+ G+ P+ F P V KACS LK+ G++++ +
Sbjct: 87 WNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKEASEGREIHCDIK 146
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
++ E N V+ +L+DFYAKC L +
Sbjct: 147 RLRLESNV------------------------------YVSTALVDFYAKCGCLDDAKEV 176
Query: 153 FSKIKQKDLVSWNAMLAGYAL-GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K+ ++D+V+WN+M++G++L G +EV LL +M Q D+ PN+ ++ GVL A AQV
Sbjct: 177 FDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQM---QNDVSPNSSTIVGVLPAVAQV 233
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVI------CSC-----SVFNQLS-TRDVVVWNSI 259
++ GK IHG+ +R G I C C +F+ + ++ V W+++
Sbjct: 234 NSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAM 293
Query: 260 ISAFVRSGQVVDALDL------LRDVIVANVKPNTVTIVSVLP--------ACLKLAALP 305
+ A+V + +AL+L L+D ++ T++ V CL A+
Sbjct: 294 VGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIK 353
Query: 306 QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G V N L+ MY +CG I + + F M ++ VS+ +IS Y
Sbjct: 354 SGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGY 401
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 159/346 (45%), Gaps = 54/346 (15%)
Query: 33 WTSMMGMYNV-LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W SM+ +++ G Y+E+ L M V P+ V A +++ R GK+++ +
Sbjct: 188 WNSMISGFSLHEGSYDEVARLLVQM-QNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFC 246
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F G+ V +LD++ KC ++ +F+ M +V N
Sbjct: 247 VRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMG---IVKNE---------------- 287
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNTISLSGVLAACAQ 210
V+W+AM+ Y + F E L ++ M++ D + + ++L+ V+ CA
Sbjct: 288 ----------VTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCAN 337
Query: 211 VKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ + G +H Y ++ + + CG + + FN++ RD V + +I
Sbjct: 338 LTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAI 397
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GL 308
IS +V++G + L + ++ ++ + P T+ SVLPAC LA L G
Sbjct: 398 ISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGF 457
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + NALIDMY +CG I +RK+F M + +VSWN MI YG
Sbjct: 458 TADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYG 503
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 123/245 (50%), Gaps = 27/245 (11%)
Query: 134 NSLIDFYAKCRYLKVSHCKFSKI--KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
L+D Y C LK++ F K+ + K++V WN ++ YA G EE +L +M+
Sbjct: 55 EKLVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLY--YKMLG 112
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVIC 240
+ PN + VL AC+ +K G+ IH + L ++++STA CG +
Sbjct: 113 YGITPNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDD 172
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ VF+++ RDVV WNS+IS F D + L + +V PN+ TIV VLPA +
Sbjct: 173 AKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQ 232
Query: 301 LAALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNV 348
+ +L G F V ++D+YG+C I +R+IF +M KN V+W+
Sbjct: 233 VNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSA 292
Query: 349 MISVY 353
M+ Y
Sbjct: 293 MVGAY 297
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/306 (24%), Positives = 136/306 (44%), Gaps = 50/306 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLF---YLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY 88
W++M+G Y V + E + LF ++ D + V + C+ L D G ++
Sbjct: 289 TWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLH 348
Query: 89 DYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKV 148
Y I F +LDL +V N+L+ YAKC +
Sbjct: 349 CYAIKSGF---------VLDL---------------------MVGNTLLSMYAKCGIING 378
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
+ F+++ +D VS+ A+++GY G EE + EM++ + + P +L+ VL AC
Sbjct: 379 AMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQL--SGINPEKATLASVLPAC 436
Query: 209 AQVKGVKLGKAIHGYVL-----------RHHIHLSTACGFVICSCSVFNQLSTRDVVVWN 257
A + G+ G H Y + I + CG + + VF+++ R +V WN
Sbjct: 437 AHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWN 496
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA 317
++I A+ G ++AL L ++ +KP+ VT + ++ AC + + G + +NA
Sbjct: 497 TMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAE----GKYWFNA 552
Query: 318 LIDMYG 323
+ +G
Sbjct: 553 MTQDFG 558
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 31/179 (17%)
Query: 204 VLAACAQVKGVKLGKAIHGYVLR--HHIH----------------LSTACGFVICSCSVF 245
+L +C Q K + GK IH ++L+ H H L AC + + VF
Sbjct: 15 LLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKIARHVF 74
Query: 246 NQLSTR--DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
+++ R +VV+WN +I A+ +G +A+DL ++ + PN T VL AC L
Sbjct: 75 DKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKE 134
Query: 304 LPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+G L + +V AL+D Y +CG + ++++F M +++V+WN MIS
Sbjct: 135 ASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMIS 193
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 79/198 (39%), Gaps = 32/198 (16%)
Query: 21 FLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD 80
F L ++T+++ Y G EE + +F M G+ P+ V AC+ L
Sbjct: 382 FFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAG 441
Query: 81 YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFY 140
G + Y I F + + L+D++ KCG+++ +F+ M
Sbjct: 442 LHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRM-------------- 487
Query: 141 AKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTIS 200
++ +VSWN M+ Y + G E L D M+ ++P+ ++
Sbjct: 488 ----------------HKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQ--SEGLKPDDVT 529
Query: 201 LSGVLAACAQVKGVKLGK 218
+++AC+ V GK
Sbjct: 530 FICLISACSHSGLVAEGK 547
>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 809
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 160/345 (46%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ Y+ G + + LM ++ ++P V A S L+ R+GK+++ Y
Sbjct: 203 SWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYA 262
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F+ + L+D++ KCG ++ LF+ M
Sbjct: 263 MRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGM------------------------- 297
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
++++VSWN+M+ Y +E + +M+ ++P +S+ G L ACA +
Sbjct: 298 -----LERNVVSWNSMIDAYVQNENPKEAMVIFQ--KMLDEGVKPTDVSVMGALHACADL 350
Query: 212 KGVKLGKAIHGY-----------VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ G+ IH V+ I + C V + S+F +L +R +V WN++I
Sbjct: 351 GDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMI 410
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
F ++G+ ++AL+ + VKP+T T VSV+ A +L+ L
Sbjct: 411 LGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLD 470
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
FV AL+DMY +CGAI +R IF +M +++ +WN MI YG
Sbjct: 471 KNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYG 515
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 85/337 (25%), Positives = 154/337 (45%), Gaps = 55/337 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y +E + +F M+D+GV+P AC++L D G+ ++
Sbjct: 304 SWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLS 363
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + E+D++ V NSLI Y KC+ + +
Sbjct: 364 VEL------------------------------ELDRNVSVVNSLISMYCKCKEVDTAAS 393
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K++ + +VSWNAM+ G+A G E N +M+ ++P+T + V+ A A++
Sbjct: 394 MFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQ--ARTVKPDTFTYVSVITAIAEL 451
Query: 212 KGVKLGKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
K IHG V+R+ ++ ++TA CG ++ + +F+ +S R V WN++I
Sbjct: 452 SITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMI 511
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
+ G AL+L ++ ++PN VT +SV+ AC + GL +
Sbjct: 512 DGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSI 571
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
+ A++D+ GR G + ++ + MP K V+
Sbjct: 572 EPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVN 608
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 146/301 (48%), Gaps = 49/301 (16%)
Query: 83 VGKDVYDYMISIKFEGNACVK--RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFY 140
+ +VY++ ++ E + +K R +L L K +GL+ Q+ L L+ +
Sbjct: 31 IPANVYEHPAALLLERCSSLKELRHILPLIFK-------NGLY----QEHLFQTKLVSLF 79
Query: 141 AKCRYLKVSHCK--FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME----MIQTDM 194
CRY V F I +K V + ML G+A +V++L ++ M ++
Sbjct: 80 --CRYGSVDEAARVFEPIDKKLNVLYYTMLKGFA------KVSDLDKALKFFVRMRDDEV 131
Query: 195 QPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCS 243
+P + + +L C +++GK IHG +++ L C V +
Sbjct: 132 EPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARK 191
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA- 302
VF+++ RD+V WN+I++ + ++G AL+++ + N+KP+ +TIVSVLPA L
Sbjct: 192 VFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRL 251
Query: 303 ----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
A+ G + + AL+DMY +CG+++ +R +F M +N+VSWN MI
Sbjct: 252 IRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDA 311
Query: 353 Y 353
Y
Sbjct: 312 Y 312
>gi|195651407|gb|ACG45171.1| CRR4 [Zea mays]
Length = 601
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 162/330 (49%), Gaps = 24/330 (7%)
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
L ++E++ + +G P V K+C+ G + + + G+ V
Sbjct: 56 LSLHQELIEAVSSLHRRGGAIPSGCIPLVLKSCALSAASCQGTQTHCHALVRGMLGDVFV 115
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ L+D + K G M+ FEEM +D + N LI Y++ ++ + F + +K
Sbjct: 116 QTALVDFYAKNGNMDSAVMAFEEMPIKDPIPMNCLIIGYSRSGDVEEARRLFDSMPRKTS 175
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
SWN+M+A YA GG +E L D+M ++ PN I+++ V + CA+ ++ G+
Sbjct: 176 ASWNSMIACYAHGGEFQEALTLFDQM--LREGASPNAITITTVFSICAKTGDLETGRRAK 233
Query: 222 GYVLRHH-----IHLSTACGFVICSC-----SVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+V +H + +V C F+++ RDVV W+++I+ + +G+ +
Sbjct: 234 AWVSEEDLQNVIVHTALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHE 293
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNALID 320
+L+L + N KPN VT+V VL AC +L + G GS++ +ALID
Sbjct: 294 SLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGSALID 353
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
MY +CG + ++R +F M K +++WN MI
Sbjct: 354 MYTKCGHVARARDVFHRMEQKVVIAWNSMI 383
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 140/289 (48%), Gaps = 44/289 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y G ++E + LF M+ +G P+ V+ C++ D G+ +
Sbjct: 177 SWNSMIACYAHGGEFQEALTLFDQMLREGASPNAITITTVFSICAKTGDLETGRRAKAW- 235
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ EE Q+ +V+ +L++ Y KCR + +
Sbjct: 236 ------------------------------VSEEDLQNVIVHTALMEMYVKCRAIDEARR 265
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+F ++ ++D+V+W+ M+AGY+ G E L + M+ T+ +PN ++L GVL+ACAQ+
Sbjct: 266 EFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKA--TNCKPNEVTLVGVLSACAQL 323
Query: 212 KGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSII 260
+LG+ I Y+ + L+ T CG V + VF+++ + V+ WNS+I
Sbjct: 324 GSDELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHVARARDVFHRMEQKVVIAWNSMI 383
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG 309
+G DA+ L +++ V+PN +T +++L AC + +G+
Sbjct: 384 RGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTACTHAGLVDKGMA 432
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 135/321 (42%), Gaps = 63/321 (19%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W++M+ Y+ G E + LF M +P+ V AC++L +G+ + Y
Sbjct: 278 WSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGSY-- 335
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
I+ + +TS L ++LID Y KC ++ +
Sbjct: 336 ------------------IESQTLPLTSYL----------GSALIDMYTKCGHVARARDV 367
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F +++QK +++WN+M+ G AL GF E+ L EM + +QPN I+ +L AC
Sbjct: 368 FHRMEQKVVIAWNSMIRGLALNGFAEDAIALYGEM--VGDGVQPNEITFLALLTACTHAG 425
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
V G A + ++ H S C+C I+ +SG++ +A
Sbjct: 426 LVDKGMAFFQEMKKNKQHASPQVEH--CAC----------------IVDLLCKSGRLWEA 467
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPAC-----LKLAALPQGL-----GTGSFVWNALIDMY 322
+ D+ V+PN V ++L AC ++LA L G S ++ L ++Y
Sbjct: 468 YKFICDM---EVEPNAVIWTTLLSACRAHADVELAKLAAGKLVVLEPNSSSIYVLLSNIY 524
Query: 323 GRCGAIQKSRKIFVLMPHKNL 343
G R+I LM KNL
Sbjct: 525 ADAGLWGDVREIRDLMRSKNL 545
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
+F+ + + WNS+I+ + G+ +AL L ++ PN +TI +V C K
Sbjct: 166 LFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGASPNAITITTVFSICAKTGD 225
Query: 304 LPQGLGTGSFV----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L G ++V AL++MY +C AI ++R+ F MP +++V+W+ MI+ Y
Sbjct: 226 LETGRRAKAWVSEEDLQNVIVHTALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGY 285
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
N LI Y R G ++++R++F MP K SWN MI+ Y
Sbjct: 148 NCLIIGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYA 186
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 95/387 (24%), Positives = 188/387 (48%), Gaps = 54/387 (13%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCN----------------------WTSMMGMYNVL 43
++HAH++ + +FL +++++V CN + +M+ Y
Sbjct: 32 KIHAHIVKFSLSQSSFLVTKMVDV-CNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHN 90
Query: 44 GYYEEIVNLFYLMI-----DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
Y + ++ M+ + + PD F P V K+C+ L Y +GK V+ ++ +
Sbjct: 91 KVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKS 150
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
N V+ L+++++KC ++ +FEEM ++D + N+LI + + ++ + F +++
Sbjct: 151 NTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQ 210
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
K + SW A+++GYA G + M+M+ ++P+ ISL VL CAQ+ ++LG
Sbjct: 211 DKTIFSWTAIVSGYARIGCYADALEFFRRMQMV--GIEPDEISLVSVLPDCAQLGALELG 268
Query: 218 KAIHGYV-----LRH------HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
K IH Y LR+ I + CG + +F+Q+ RDV+ W+++I
Sbjct: 269 KWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANH 328
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL------------GTGSFV 314
G+ +A++L +++ A ++P+ +T V +L AC L +GL G
Sbjct: 329 GRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEH 388
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHK 341
+ L+++ G G + ++ ++ MP K
Sbjct: 389 YGCLVNLLGLSGRLDQALELVKKMPRK 415
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 96/208 (46%), Gaps = 53/208 (25%)
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSV 244
P+ + V+ +CA + LGK +HG+V + + + C + + V
Sbjct: 115 PDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRV 174
Query: 245 FNQLSTRDVVVWNSIISAFVRSGQV-------------------------------VDAL 273
F +++ RD V WN++IS VR GQ+ DAL
Sbjct: 175 FEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADAL 234
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTGSF-----VWNALIDMY 322
+ R + + ++P+ +++VSVLP C +L AL G F V NALI+MY
Sbjct: 235 EFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMY 294
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+CG+I + R++F M ++++SW+ MI
Sbjct: 295 AKCGSIDQGRRLFDQMKERDVISWSTMI 322
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 97/262 (37%), Gaps = 84/262 (32%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC------------------------------ 31
+LG QVH H+ G + + + L+E++
Sbjct: 134 DLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGH 193
Query: 32 ----------------------NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCP 69
+WT+++ Y +G Y + + F M G+ PD
Sbjct: 194 VRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLV 253
Query: 70 KVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQD 129
V C++L +GK ++ Y F N CV L++++ KCG ++ LF++M
Sbjct: 254 SVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQM--- 310
Query: 130 FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
K++D++SW+ M+ G A G E L EM+
Sbjct: 311 ---------------------------KERDVISWSTMIVGLANHGRAREAIELFQEMQ- 342
Query: 190 IQTDMQPNTISLSGVLAACAQV 211
+ ++P+ I+ G+L ACA
Sbjct: 343 -KAKIEPSIITFVGLLTACAHA 363
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI-----VANVKPNTVTIVSVLPAC 298
+F ++ + ++N++I A+ + V A+ + + ++ + P+ T V+ +C
Sbjct: 68 LFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSC 127
Query: 299 LKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
L G + + V N+L++MY +C ++ + ++F M ++ VSWN
Sbjct: 128 AGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWN 187
Query: 348 VMIS 351
+IS
Sbjct: 188 TLIS 191
>gi|302810635|ref|XP_002987008.1| hypothetical protein SELMODRAFT_182822 [Selaginella moellendorffii]
gi|300145173|gb|EFJ11851.1| hypothetical protein SELMODRAFT_182822 [Selaginella moellendorffii]
Length = 694
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 157/344 (45%), Gaps = 47/344 (13%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT ++ Y + + + LF M +G R D + ACS L+D + GK ++ +
Sbjct: 9 SWTIIISAYVRADHGSDALQLFRTMNQEGDRADEVTLTTLLGACSSLEDLQQGKMIHSLI 68
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + + G + +QD +V NSL++ YAKCR L +
Sbjct: 69 VELGY------------------------GEQDGEEQDLMVGNSLVNMYAKCRSLADAIA 104
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ- 210
F ++K + + SW M+ +A G + +M D PN ++ +LAAC+
Sbjct: 105 IFDRMKNRSVFSWTIMVTAFAQNGQLQRAIQCYRQMCCDGVD--PNAVTFVALLAACSSG 162
Query: 211 ---VKGVKLGKAIHGYVLRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
G K+ + L + + +A CG + + F+++ ++ V WN +I
Sbjct: 163 GELAAGRKIAARVEASGLDSDLIVGSAIVNFYGKCGRLDEAREAFDRMPAKNNVTWNGMI 222
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA----------LPQGLGT 310
+A+V+SG A+DL + V P+ + + S+L AC L + Q L +
Sbjct: 223 AAYVQSGAATQAMDLFATMEDEGVVPDAMAVSSILGACSGLESGKRIHSAVIDRRQELQS 282
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V NAL+ MY RCG++ +R +F+ +P KN VSW +I+ +
Sbjct: 283 DRAVCNALVHMYARCGSLDDARLVFLAIPSKNTVSWTTIIAAFA 326
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/354 (24%), Positives = 156/354 (44%), Gaps = 66/354 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W M+ Y G + ++LF M D+GV PD + ACS L+ GK ++ +
Sbjct: 217 TWNGMIAAYVQSGAATQAMDLFATMEDEGVVPDAMAVSSILGACSGLES---GKRIHSAV 273
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + +E+ D V N+L+ YA+C L +
Sbjct: 274 IDRR----------------------------QELQSDRAVCNALVHMYARCGSLDDARL 305
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVT---NLLDEMEMIQTDMQPNTISLSGVLAAC 208
F I K+ VSW ++A +A R+++ L EM++ + P+ +++ L C
Sbjct: 306 VFLAIPSKNTVSWTTIIAAFAQQENRDDIEAAFQLFREMDL--DGVAPSEVTIFYALETC 363
Query: 209 AQVK--GVKLGKAIHGY--------------VLRHHIHLSTACGFVICSCSV-FNQLSTR 251
+++ G+ G+A+H VL + + +CG +I + ++ F+ L +
Sbjct: 364 SKMDRGGLASGRALHTAMDTAGRVELLSSVEVLNSLLDMYASCGSLIDAEAIFFDHLLGK 423
Query: 252 --DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC----------- 298
DVV W ++I+A+V+ GQ AL L + + + VK + + + ++L AC
Sbjct: 424 NVDVVSWTNMIAAYVQHGQSSSALLLAKKMDLEGVKSDEIAMSTILGACTAHQATSLGRE 483
Query: 299 LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
L A G + + V NAL+ MYG G + + ++F + + N + N ++
Sbjct: 484 LHRRARELGYASNTIVGNALVFMYGSWGRVDDAARVFQELKNANSPNSNTFTAM 537
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 112/225 (49%), Gaps = 30/225 (13%)
Query: 157 KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKL 216
+K++ SW +++ Y + L M Q + + ++L+ +L AC+ ++ ++
Sbjct: 3 SRKNVFSWTIIISAYVRADHGSDALQLFRTMN--QEGDRADEVTLTTLLGACSSLEDLQQ 60
Query: 217 GKAIH------GY-----------VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
GK IH GY V +++ C + + ++F+++ R V W +
Sbjct: 61 GKMIHSLIVELGYGEQDGEEQDLMVGNSLVNMYAKCRSLADAIAIFDRMKNRSVFSWTIM 120
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC---------LKLAAL--PQGL 308
++AF ++GQ+ A+ R + V PN VT V++L AC K+AA GL
Sbjct: 121 VTAFAQNGQLQRAIQCYRQMCCDGVDPNAVTFVALLAACSSGGELAAGRKIAARVEASGL 180
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ V +A+++ YG+CG + ++R+ F MP KN V+WN MI+ Y
Sbjct: 181 DSDLIVGSAIVNFYGKCGRLDEAREAFDRMPAKNNVTWNGMIAAY 225
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 80/356 (22%), Positives = 151/356 (42%), Gaps = 60/356 (16%)
Query: 32 NWTSMMGMYNVLGYYEEI---VNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY 88
+WT+++ + ++I LF M GV P + CS++
Sbjct: 317 SWTTIIAAFAQQENRDDIEAAFQLFREMDLDGVAPSEVTIFYALETCSKMD--------- 367
Query: 89 DYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKV 148
G R L GR+E+ S + V NSL+D YA C L
Sbjct: 368 --------RGGLASGRALHTAMDTAGRVELLSSV--------EVLNSLLDMYASCGSLID 411
Query: 149 SHCKFSKI---KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
+ F K D+VSW M+A Y G + + LL +M ++ + I++S +L
Sbjct: 412 AEAIFFDHLLGKNVDVVSWTNMIAAYVQHG--QSSSALLLAKKMDLEGVKSDEIAMSTIL 469
Query: 206 AACAQVKGVKLGKAIH------GY-----VLRHHIHLSTACGFVICSCSVFNQL---STR 251
AC + LG+ +H GY V + + + G V + VF +L ++
Sbjct: 470 GACTAHQATSLGRELHRRARELGYASNTIVGNALVFMYGSWGRVDDAARVFQELKNANSP 529
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTG 311
+ + ++I+ + R G+ + AL L ++ + V+P T S+ AC L + L
Sbjct: 530 NSNTFTAMIAGYARQGRTLQALSLYNEMNLHGVEPRDATFTSIFQACSHAGFLAKALEHF 589
Query: 312 SFVWN------------ALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISVYG 354
F+++ ++D+ GR G ++++ ++ + MP++ ++V+W +++ G
Sbjct: 590 VFIYDFQGLEPTAEHFGCVVDLLGRSGFVREAEELVLAMPYEPDIVAWRSLLASCG 645
>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 853
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/401 (24%), Positives = 177/401 (44%), Gaps = 83/401 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++LG+Q+H ++V G++ + + LL ++ W M+
Sbjct: 251 IDLGVQLHGLVVVSGLDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISG 310
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G EE + FY MI GV PD + + S+ ++ + ++ Y++
Sbjct: 311 YVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCRQIHCYIMR------ 364
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ D + ++LID Y KCR + ++ FS+
Sbjct: 365 ------------------------HSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSV 400
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEM----IQTDMQPNTISLSGVLAACAQVKGVK 215
D+V + AM++GY G +D +EM ++ + PN I+L +L + +K
Sbjct: 401 DVVVFTAMISGYLHNGLN------IDALEMFRWLVKVKISPNEITLVSILPVIGGLLALK 454
Query: 216 LGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
LG+ +HG++++ I + CG + + +F +LS RD+V WNS+I+
Sbjct: 455 LGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRLSKRDIVSWNSMITRCA 514
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLGTGSF 313
+S A+D+ R + V+ + + V+I + L AC L + + L +
Sbjct: 515 QSDNPSAAIDIFRQMGVSGICFDCVSISAALSACANLPSESFGKAIHGFMIKHSLALDVY 574
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ LIDMY +CG ++ + +F M KN+VSWN +I+ YG
Sbjct: 575 SESTLIDMYAKCGNLKAAMNVFDTMKEKNIVSWNSIIAAYG 615
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 97/368 (26%), Positives = 178/368 (48%), Gaps = 55/368 (14%)
Query: 7 VHAHLIVCGVELCAFLGSQLLEVFCN-WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH 65
+ A+L +++ L ++L+ C W M+ Y G + ++ F LM + P+
Sbjct: 176 IKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGFSLMRMDQISPNA 235
Query: 66 FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEE 125
+D ++S+ C + L+DL ++ + + SGL
Sbjct: 236 VT--------------------FDCVLSV------CASKLLIDLGVQLHGLVVVSGL--- 266
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
D + + NSL+ Y+KC + F + + D V+WN M++GY G EE +L+
Sbjct: 267 -DFEGSIKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEE--SLIF 323
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-----------A 234
EMI + + P+ I+ S +L + ++ + ++ + IH Y++RH I L
Sbjct: 324 FYEMISSGVLPDAITFSSLLPSVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFK 383
Query: 235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV 294
C V + +F+Q ++ DVVV+ ++IS ++ +G +DAL++ R ++ + PN +T+VS+
Sbjct: 384 CRGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSI 443
Query: 295 LPACLKLAALPQGLGTGSFVWN-----------ALIDMYGRCGAIQKSRKIFVLMPHKNL 343
LP L AL G F+ A+IDMY +CG + + +IF + +++
Sbjct: 444 LPVIGGLLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRLSKRDI 503
Query: 344 VSWNVMIS 351
VSWN MI+
Sbjct: 504 VSWNSMIT 511
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 153/343 (44%), Gaps = 54/343 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ + +G + + ++ M+ GV PD P + KAC LK+++ + + D +
Sbjct: 102 WNSIISSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIEFLSDTVS 161
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
S+ + N V L+ +++ G++++ LF+
Sbjct: 162 SLGMDCNEFVASSLIKAYLEYGKIDVAGKLFD---------------------------- 193
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
++ QKD V WN ML GYA G + V M M Q + PN ++ VL+ CA
Sbjct: 194 --RVLQKDCVIWNVMLNGYAKCGASDSVIKGFSLMRMDQ--ISPNAVTFDCVLSVCASKL 249
Query: 213 GVKLGKAIHGYVL-----------RHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ LG +HG V+ + + + CG + +F +S D V WN +IS
Sbjct: 250 LIDLGVQLHGLVVVSGLDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMIS 309
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGT 310
+V+SG + ++L ++I + V P+ +T S+LP+ K L +
Sbjct: 310 GYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCRQIHCYIMRHSISL 369
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
F+ +ALID Y +C + ++KIF ++V + MIS Y
Sbjct: 370 DIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISGY 412
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/384 (20%), Positives = 172/384 (44%), Gaps = 77/384 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------CN------WTSMMGM 39
+E Q+H +++ + L FL S L++ + CN +T+M+
Sbjct: 352 LEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISG 411
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G + + +F ++ + P+ + L ++G++++ ++I F+ N
Sbjct: 412 YLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVIGGLLALKLGRELHGFIIKKGFD-N 470
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
C I C ++ID YAKC + +++ F ++ ++
Sbjct: 471 RCN--------IGC---------------------AVIDMYAKCGRMNLAYEIFGRLSKR 501
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSWN+M+ A ++ +M + + + + +S+S L+ACA + GKA
Sbjct: 502 DIVSWNSMITRCAQSDNPSAAIDIFRQMGV--SGICFDCVSISAALSACANLPSESFGKA 559
Query: 220 IHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IHG++++H + L CG + + +VF+ + +++V WNSII+A+ G+
Sbjct: 560 IHGFMIKHSLALDVYSESTLIDMYAKCGNLKAAMNVFDTMKEKNIVSWNSIIAAYGNHGK 619
Query: 269 VVDALDLLRDVI-VANVKPNTVTIVSVLPACLKLAALPQ------------GLGTGSFVW 315
+ D+L L +++ + +P+ +T + ++ C + + + G+ +
Sbjct: 620 LKDSLCLFHEMVEKSGNRPDQITFLEIISLCCHVGDVDEGVRFFRSMTQDYGIQPQQEHY 679
Query: 316 NALIDMYGRCGAIQKSRKIFVLMP 339
++D++GR G + ++ + MP
Sbjct: 680 ACVVDLFGRAGRLSEAYETVKSMP 703
>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
Length = 695
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/331 (28%), Positives = 166/331 (50%), Gaps = 26/331 (7%)
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
L ++E + + + +G P V K+C++ G + + + G+ V
Sbjct: 152 LSLHQEFIEVVSSLHRRGGAIPSGCIPLVLKSCAQSAASCQGSQTHCHALVRGMLGDVFV 211
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ L+D + K G M+ F+EM +D + N LI Y+K ++ + F + ++
Sbjct: 212 QTALVDFYAKNGDMDSALMAFKEMPVKDPIPMNCLITGYSKSGDVEEARRLFDSMPRRTS 271
Query: 162 VSWNAMLAGYALGG-FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
SWN+M+A YA GG FRE +T L D+M ++ PN I+++ V + CA+ + G+
Sbjct: 272 ASWNSMIACYAHGGEFREALT-LFDQM--LREGASPNAITITTVFSICAKTGDLDTGRRA 328
Query: 221 HGYVLRHH-----IHLSTACGFVICSC-----SVFNQLSTRDVVVWNSIISAFVRSGQVV 270
++ +H + +V C F+++ RDVV W+++I+ + ++G+
Sbjct: 329 RAWIREEDLQNVIVHTALMEMYVKCRAIDEARHEFDRMPRRDVVAWSTMIAGYSQNGRPH 388
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLGTGSFVWNALI 319
++L+L + N KPN VT+V VL AC +L + Q L S++ +ALI
Sbjct: 389 ESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGNYIESQTLPLTSYLGSALI 448
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
DMY +CG + ++R +F M K +V+WN MI
Sbjct: 449 DMYTKCGHVARARSVFNRMEQKVVVTWNSMI 479
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 140/289 (48%), Gaps = 44/289 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y G + E + LF M+ +G P+ V+ C++ D G+ +
Sbjct: 273 SWNSMIACYAHGGEFREALTLFDQMLREGASPNAITITTVFSICAKTGDLDTGRRARAW- 331
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ EE Q+ +V+ +L++ Y KCR + +
Sbjct: 332 ------------------------------IREEDLQNVIVHTALMEMYVKCRAIDEARH 361
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+F ++ ++D+V+W+ M+AGY+ G E L + M+ T+ +PN ++L GVL+ACAQ+
Sbjct: 362 EFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKA--TNCKPNEVTLVGVLSACAQL 419
Query: 212 KGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSII 260
+LG+ I Y+ + L+ T CG V + SVFN++ + VV WNS+I
Sbjct: 420 GSDELGEQIGNYIESQTLPLTSYLGSALIDMYTKCGHVARARSVFNRMEQKVVVTWNSMI 479
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG 309
+G DA+ L R ++ ++PN VT V++L AC + +G+
Sbjct: 480 RGLALNGFAEDAIALYRKMVGDGIQPNEVTFVALLTACTHAGLVDKGIA 528
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 78/321 (24%), Positives = 136/321 (42%), Gaps = 64/321 (19%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W++M+ Y+ G E + LF M +P+ V AC++L +G+ + +Y+
Sbjct: 374 WSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGNYIE 433
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
S + + L+D++ KCG + A+ R +
Sbjct: 434 SQTLPLTSYLGSALIDMYTKCGHV------------------------ARARSV------ 463
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F++++QK +V+WN+M+ G AL GF E+ L +M+ +QPN ++ +L AC
Sbjct: 464 FNRMEQKVVVTWNSMIRGLALNGFAEDAIALY--RKMVGDGIQPNEVTFVALLTACTHAG 521
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
V G A ++ H+S C+C I+ +SG++ +A
Sbjct: 522 LVDKGIAFFEE-MKKKQHVSPQVEH--CAC----------------IVDLLCKSGRLWEA 562
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPAC-----LKLAALPQGL-----GTGSFVWNALIDMY 322
+ D+ V+PN V ++L AC ++LA L G S ++ L ++Y
Sbjct: 563 YKFICDM---EVEPNAVIWSTLLSACRAHADVELAKLAAGKLVALEPNNSSIYVLLSNIY 619
Query: 323 GRCGAIQKSRKIFVLMPHKNL 343
G R+I LM KNL
Sbjct: 620 ADAGLWGDVREIRDLMRSKNL 640
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
+F+ + R WNS+I+ + G+ +AL L ++ PN +TI +V C K
Sbjct: 262 LFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLREGASPNAITITTVFSICAKTGD 321
Query: 304 LPQGLGTGSF----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L G ++ V AL++MY +C AI ++R F MP +++V+W+ MI+ Y
Sbjct: 322 LDTGRRARAWIREEDLQNVIVHTALMEMYVKCRAIDEARHEFDRMPRRDVVAWSTMIAGY 381
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
N LI Y + G ++++R++F MP + SWN MI+ Y
Sbjct: 244 NCLITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYA 282
>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Vitis vinifera]
Length = 852
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/387 (25%), Positives = 162/387 (41%), Gaps = 100/387 (25%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W ++ LG+ E+++ L+ M G RPDH+ P V KAC E+ +R G V+ +
Sbjct: 94 WNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVF 153
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ FE N V N L+ Y +C + +
Sbjct: 154 ASGFEWNV------------------------------FVGNGLVSMYGRCGAWENARQV 183
Query: 153 FSKIKQK---DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F +++++ DLVSWN+++A Y GG + + M ++P+ +SL VL ACA
Sbjct: 184 FDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTE-DLGIRPDAVSLVNVLPACA 242
Query: 210 QVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
V GK +HGY LR + + CG + + VF ++ +DVV WN+
Sbjct: 243 SVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNA 302
Query: 259 IISAFVRSGQVVD-----------------------------------ALDLLRDVIVAN 283
+++ + + G+ D ALD+ R + +
Sbjct: 303 MVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCG 362
Query: 284 VKPNTVTIVSVLPACLKLAALPQG------------------LGTGSFVWNALIDMYGRC 325
+PN VT+VS+L C L G G V NALIDMY +C
Sbjct: 363 SEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKC 422
Query: 326 GAIQKSRKIFVLMPHKN--LVSWNVMI 350
+ + +R +F L+P K+ +V+W V+I
Sbjct: 423 KSPKAARAMFDLIPPKDRSVVTWTVLI 449
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 104/415 (25%), Positives = 186/415 (44%), Gaps = 66/415 (15%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF------------------------CNWTSMMGM 39
G VHA + G E F+G+ L+ ++ +W S++
Sbjct: 145 GASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAA 204
Query: 40 YNVLGYYEEIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
Y G + +F M D G+RPD V AC+ + + GK V+ Y +
Sbjct: 205 YMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFE 264
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
+ V ++D++ KCG ME + +FE M +D + N+++ Y++ + F KI+
Sbjct: 265 DVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIR 324
Query: 158 QK----DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG 213
++ ++V+W+A++AGYA G E ++ +M + + +PN ++L +L+ CA
Sbjct: 325 EEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGS--EPNVVTLVSLLSGCALAGT 382
Query: 214 VKLGKAIHGYVLRHHIHLS------------------TACGFVICSCSVFNQLSTRD--V 253
+ GK H + ++ ++L + C + ++F+ + +D V
Sbjct: 383 LLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSV 442
Query: 254 VVWNSIISAFVRSGQVVDALDLLRDVIVAN--VKPNTVTIVSVLPACLKLAALPQGLGTG 311
V W +I + G+ +AL+L ++ + V PN TI L AC +L AL G
Sbjct: 443 VTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIH 502
Query: 312 S------------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ FV N LIDMY + G + +R +F M +N VSW +++ YG
Sbjct: 503 AYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYG 557
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 90/412 (21%), Positives = 176/412 (42%), Gaps = 66/412 (16%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G QVH + + G+ F+G+ +++++ +W +M+ Y+
Sbjct: 250 GKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQ 309
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+G +++ + LF + ++ + + V ++ +G + D ++ G+
Sbjct: 310 IGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRG---LGFEALDVFRQMRLCGSEPN 366
Query: 103 KRPLLDLFIKC--------GRMEITSGL-----FEEMD--QDFLVNNSLIDFYAKCRYLK 147
L+ L C G+ + +E D D +V N+LID Y+KC+ K
Sbjct: 367 VVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPK 426
Query: 148 VSHCKFSKIKQKD--LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
+ F I KD +V+W ++ G A G E L +M + PN ++S L
Sbjct: 427 AARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCAL 486
Query: 206 AACAQVKGVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDV 253
ACA++ ++ G+ IH YVLR+ I + + G V + VF+ + R+
Sbjct: 487 MACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNG 546
Query: 254 VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG---- 309
V W S+++ + G+ +AL + ++ + P+ VT V VL AC + QG+
Sbjct: 547 VSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNG 606
Query: 310 --------TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMISV 352
G+ + ++D+ R G + ++ ++ MP K + W ++S
Sbjct: 607 MNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSA 658
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 109/216 (50%), Gaps = 28/216 (12%)
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
WN ++ GF E+V L M+ + +P+ + VL AC ++ + G ++H
Sbjct: 94 WNQLIRRSVHLGFLEDVLQLYRRMQRL--GWRPDHYTFPFVLKACGEIPSFRCGASVHAV 151
Query: 224 VLRHH-----------IHLSTACGFVICSCSVFNQLSTR---DVVVWNSIISAFVRSGQV 269
V + + CG + VF+++ R D+V WNSI++A+++ G
Sbjct: 152 VFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDS 211
Query: 270 VDALDLLRDVIVA-NVKPNTVTIVSVLPACLKLAA-----------LPQGLGTGSFVWNA 317
+ A+ + + ++P+ V++V+VLPAC + A L GL FV NA
Sbjct: 212 IRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNA 271
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
++DMY +CG ++++ K+F M K++VSWN M++ Y
Sbjct: 272 VVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGY 307
>gi|358343602|ref|XP_003635889.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|358344096|ref|XP_003636129.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355501824|gb|AES83027.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355502064|gb|AES83267.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 662
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 103/392 (26%), Positives = 177/392 (45%), Gaps = 75/392 (19%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNVLG 44
+H H++ G L +F G +L++ + W SM+ + G
Sbjct: 22 SLHTHILKSG-SLFSFFGHKLIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRG 80
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
+E + L+ M+ +GV PD + ++KA SE+ R G+ + + + FE
Sbjct: 81 KTKEAIELYSNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFE------- 133
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
+ D F+ G ++D YAK +K + F ++ KD+V +
Sbjct: 134 -VSDGFVATG---------------------IVDMYAKFGKMKDARFVFDRVLDKDVVLF 171
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
A++ GY G E + ++M + + ++PN +L+ VL +C + + GK IHG V
Sbjct: 172 TALIVGYNQHGLDGEALEVFEDM--VGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLV 229
Query: 225 LRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
+++ + + + C V S VFN L+ V W S I V++G+ AL
Sbjct: 230 VKYGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEVAL 289
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LGT--GSFVWNALIDMY 322
+ R+++ ++ PN T+ S+L AC LA L G LG FV ALI +Y
Sbjct: 290 SMFREMMRCSISPNHFTLSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKFVDAALIHLY 349
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G+CG ++K+R +F + ++VS N MI Y
Sbjct: 350 GKCGNVEKARSVFDSLTELDIVSINTMIYAYA 381
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 85/343 (24%), Positives = 153/343 (44%), Gaps = 55/343 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
+T+++ YN G E + +F M+ ++P+ + V +C L D GK ++ ++
Sbjct: 171 FTALIVGYNQHGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVV 230
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
E + LL ++ KC +E + +F NSL YA SH
Sbjct: 231 KYGLESVVASQTSLLTMYSKCNMVEDSIKVF----------NSLA--YA-------SH-- 269
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
V+W + + G G REEV L EM++ + PN +LS +L AC+ +
Sbjct: 270 ---------VTWTSFIVGLVQNG-REEVA-LSMFREMMRCSISPNHFTLSSILHACSSLA 318
Query: 213 GVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ G+ IH +V IHL CG V + SVF+ L+ D+V N++I
Sbjct: 319 MLEAGEQIHAVTVKLGVDGNKFVDAALIHLYGKCGNVEKARSVFDSLTELDIVSINTMIY 378
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA---- 317
A+ ++G +AL+L + ++PN VT +S+L AC + +G S + N
Sbjct: 379 AYAQNGFGHEALELFERLKKLGLEPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIE 438
Query: 318 --------LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+ID+ GR +++ + + +++ W +++
Sbjct: 439 LTRDHYTCMIDLLGRAKRFEEATMLIEEGKNPDVIQWRTLLNA 481
>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Brachypodium distachyon]
Length = 861
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/370 (26%), Positives = 171/370 (46%), Gaps = 79/370 (21%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M+ + G EE V + Y M+ GVRPD ACS L+ VG++V+ ++
Sbjct: 227 TWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFV 286
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ +++ + V ++L+D YA +VSH
Sbjct: 287 LKD-----------------------------DDLAANSFVASALVDMYASNE--QVSHA 315
Query: 152 K--FSKIKQ--KDLVSWNAMLAGYAL-GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
+ F + + + L WNAM+ GYA GG EE L ME + P+ +++GVL
Sbjct: 316 RRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSRME-AEAGCAPSETTMAGVLP 374
Query: 207 ACAQVKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVV 255
ACA+ + +A+HGYV++ + + G + + ++F + RD+V
Sbjct: 375 ACARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVS 434
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVK--------------------PNTVTIVSVL 295
WN++I+ + G + +A L+R++ + + PN +T++++L
Sbjct: 435 WNTLITGCIVQGLISEAFQLVREMQLPSSAASGETMLEGDDTSVDGQRCMPNNITLMTLL 494
Query: 296 PACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLV 344
P C LAA +G L + V +AL+DMY +CG + +R +F +P +N++
Sbjct: 495 PGCAVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYAKCGCLALARAVFDRLPRRNVI 554
Query: 345 SWNVMISVYG 354
+WNV+I YG
Sbjct: 555 TWNVLIMAYG 564
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 98/370 (26%), Positives = 157/370 (42%), Gaps = 85/370 (22%)
Query: 37 MGMYNVL--------GYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDV 87
+GM+N + G EE + LF M + G P V AC+ + + + V
Sbjct: 329 LGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAV 388
Query: 88 YDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147
+ Y+ VKR +M + V N+L+D YA+ +
Sbjct: 389 HGYV----------VKR--------------------DMASNRFVQNALMDMYARLGRMD 418
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQT--------------- 192
+H F+ I +D+VSWN ++ G + G E L+ EM++ +
Sbjct: 419 EAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAASGETMLEGDDTSV 478
Query: 193 DMQ---PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACG------FVICSC- 242
D Q PN I+L +L CA + GK IHGY +RH + A G + C C
Sbjct: 479 DGQRCMPNNITLMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYAKCGCL 538
Query: 243 ----SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN--VKPNTVTIVSVLP 296
+VF++L R+V+ WN +I A+ G +AL L D +VAN PN VT ++ L
Sbjct: 539 ALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALF-DRMVANGEATPNEVTFIAALA 597
Query: 297 ACLKLAALPQGL------------GTGSFVWNALIDMYGRCGAIQKSRKIFVLM-PHKNL 343
AC + +GL ++ ++D+ GR G + ++ I M P ++
Sbjct: 598 ACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRAGRLDEAYGIISSMAPGEHQ 657
Query: 344 VS-WNVMISV 352
VS W+ M+
Sbjct: 658 VSAWSTMLGA 667
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 146/325 (44%), Gaps = 65/325 (20%)
Query: 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLF 123
DHF P K+ + L+D R + ++ A ++R LL
Sbjct: 47 DHFALPPAIKSAAALRDSRSTRAIH----------GASLRRALLHRPTPA---------- 86
Query: 124 EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSWNAMLAGYALGGFREEVT 181
V+N+L+ YA+C L + F+ +D VS+N++++ L FR
Sbjct: 87 --------VSNALLTAYARCGDLDAALALFAATPPDLRDAVSYNSLISALCL--FRR-WG 135
Query: 182 NLLDEMEMIQTDMQPNTISLSGVLAACAQV--KGVKLGKAIHGYVLRHH----------- 228
+ LD + + D + ++ +L VL AC+ + +G +LG+ H + L+H
Sbjct: 136 HALDALRDMLADHEVSSFTLVSVLLACSHLADQGHRLGREAHAFALKHGFLDKGRERFPF 195
Query: 229 ---IHLSTACGFVICSCSVF--NQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283
+ + G V + +F + D+V WN++IS V+ G+ +A+ +L D++
Sbjct: 196 NALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVLYDMVALG 255
Query: 284 VKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNALIDMYGRCGAIQKS 331
V+P+ VT S LPAC +L L G L SFV +AL+DMY + +
Sbjct: 256 VRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDLAANSFVASALVDMYASNEQVSHA 315
Query: 332 RKIFVLMPH--KNLVSWNVMISVYG 354
R++F ++P + L WN MI Y
Sbjct: 316 RRVFDMVPEHGRQLGMWNAMICGYA 340
>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 708
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/352 (28%), Positives = 159/352 (45%), Gaps = 56/352 (15%)
Query: 26 LLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGK 85
L V C WTSM+ Y YEE + LF M + V + + + AC++L+ GK
Sbjct: 216 LRNVVC-WTSMIAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQGK 274
Query: 86 DVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRY 145
+ +I E ++C+ SL+D Y KC
Sbjct: 275 WFHGCLIKSGIELSSCLV------------------------------TSLLDMYVKCGD 304
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
+ + F++ DLV W AM+ GY G E +L +M + ++PN ++++ VL
Sbjct: 305 ISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMSGV--GIKPNCVTIASVL 362
Query: 206 AACAQVKGVKLGKAIHGYVLRHHI----------HLSTACGFVICSCSVFNQLSTRDVVV 255
+ C V ++LG++IHG ++ I H+ C + VF S +D+V
Sbjct: 363 SGCGLVGNLELGRSIHGLSIKVGIWDTNVANALVHMYAKCYQNRDAKYVFEMESEKDIVA 422
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-- 313
WNSIIS F ++G + +AL L + +V PN VT+ S+ AC L +L G ++
Sbjct: 423 WNSIISGFSQNGSIHEALFLFHRMNTESVMPNGVTVASLFSACASLGSLAIGSSLHAYSV 482
Query: 314 -----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V AL+D Y +CG + +R IF + KN ++W+ MI YG
Sbjct: 483 KLGFLASSSVHVGTALLDFYAKCGDAESARLIFDTIEEKNTITWSAMIGGYG 534
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 152/327 (46%), Gaps = 54/327 (16%)
Query: 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL 107
E++ + L++ G D V K KAC+E++D GK ++ + VK P
Sbjct: 137 EVIKFYDLLMKHGFGYDDIVFSKALKACTEVQDLDNGKKIHCQI----------VKVPSF 186
Query: 108 DLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAM 167
D + G L+D YAKC +K S+ F I +++V W +M
Sbjct: 187 DNVVLTG---------------------LLDMYAKCGEIKSSYKVFEDITLRNVVCWTSM 225
Query: 168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH 227
+AGY EE L + M + + N + ++ AC +++ + GK HG +++
Sbjct: 226 IAGYVKNDLYEEGLVLFNRMR--ENSVLGNEYTYGTLVMACTKLRALHQGKWFHGCLIKS 283
Query: 228 HIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL 276
I LS+ CG + + VFN+ S D+V+W ++I + +G V +AL L
Sbjct: 284 GIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLF 343
Query: 277 RDVIVANVKPNTVTIVSVLPAC-----LKLAALPQGLGTGSFVW-----NALIDMYGRCG 326
+ + +KPN VTI SVL C L+L GL +W NAL+ MY +C
Sbjct: 344 QKMSGVGIKPNCVTIASVLSGCGLVGNLELGRSIHGLSIKVGIWDTNVANALVHMYAKCY 403
Query: 327 AIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ ++ +F + K++V+WN +IS +
Sbjct: 404 QNRDAKYVFEMESEKDIVAWNSIISGF 430
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 159/382 (41%), Gaps = 79/382 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G H LI G+EL + L + LL+++ WT+M+ Y
Sbjct: 273 GKWFHGCLIKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTH 332
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G E ++LF M G++P+ V C + + +G+ ++ I +
Sbjct: 333 NGSVNEALSLFQKMSGVGIKPNCVTIASVLSGCGLVGNLELGRSIHGLSIKV-------- 384
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
G++ D V N+L+ YAKC + + F +KD+V
Sbjct: 385 ------------------GIW-----DTNVANALVHMYAKCYQNRDAKYVFEMESEKDIV 421
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+WN++++G++ G E L M + PN ++++ + +ACA + + +G ++H
Sbjct: 422 AWNSIISGFSQNGSIHEALFLFHRMN--TESVMPNGVTVASLFSACASLGSLAIGSSLHA 479
Query: 223 YVLR------HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
Y ++ +H+ TA CG + +F+ + ++ + W+++I + + G
Sbjct: 480 YSVKLGFLASSSVHVGTALLDFYAKCGDAESARLIFDTIEEKNTITWSAMIGGYGKQGDT 539
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNA 317
+L+L +++ KPN T SVL AC + +G + +
Sbjct: 540 KGSLELFEEMLKKQQKPNESTFTSVLSACSHTGMVNEGKKYFSSMYKDYNFTPSTKHYTC 599
Query: 318 LIDMYGRCGAIQKSRKIFVLMP 339
++DM R G ++++ I MP
Sbjct: 600 MVDMLARAGELEQALDIIEKMP 621
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 119/285 (41%), Gaps = 36/285 (12%)
Query: 99 NACVKRPLLDLFIKCGRME---------ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
N RP L KC ++ +GL D + L+ Y Y K +
Sbjct: 52 NYAASRPCFLLLSKCTNIDSLRQAHGVLTGNGLM----GDISIATKLVSLYGSFGYTKDA 107
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F +I + D W +L Y L EV D + ++ + I S L AC
Sbjct: 108 RLVFDQIPEPDFYLWKVILRCYCLNNESFEVIKFYDLL--MKHGFGYDDIVFSKALKACT 165
Query: 210 QVKGVKLGKAIH----------GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+V+ + GK IH VL + + CG + S VF ++ R+VV W S+
Sbjct: 166 EVQDLDNGKKIHCQIVKVPSFDNVVLTGLLDMYAKCGEIKSSYKVFEDITLRNVVCWTSM 225
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------L 308
I+ +V++ + L L + +V N T +++ AC KL AL QG +
Sbjct: 226 IAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQGKWFHGCLIKSGI 285
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
S + +L+DMY +CG I +R++F H +LV W MI Y
Sbjct: 286 ELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGY 330
>gi|302793382|ref|XP_002978456.1| hypothetical protein SELMODRAFT_108616 [Selaginella moellendorffii]
gi|300153805|gb|EFJ20442.1| hypothetical protein SELMODRAFT_108616 [Selaginella moellendorffii]
Length = 899
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 157/347 (45%), Gaps = 59/347 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W +++ G+ ++ + +F+LM +D VRP+ V ACS L D GK ++
Sbjct: 194 SWNALIAANAQNGHCKDAMQVFHLMDLDGSVRPNDATFVSVVDACSNLLDLPRGKSTHER 253
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+I F D V NSL++ Y KC + +
Sbjct: 254 IIRTGF------------------------------DSYLFVGNSLVNMYGKCGSVDRAR 283
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F K+ +++VSW M+ YA GF +L M D +PN ++ V+ +C +
Sbjct: 284 LVFEKMSSRNVVSWTVMIWAYAQQGFIRAAFDLYKRM-----DCEPNAVTFMAVMDSCLR 338
Query: 211 VKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTR--DVVVWN 257
+ + + IH +++ + + CG V + S+F L R + V WN
Sbjct: 339 PEDLPRAEQIHAHMVASGFDSDAVLQVCLVTMYGKCGSVDSAWSIFENLKERSNNAVTWN 398
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW-- 315
++IS + G+ AL+ + + V+PN+VT ++ L AC L L +G + +
Sbjct: 399 AMISGLAQHGESKQALECFWKMELEGVRPNSVTYLASLEACSSLNDLTRGRQLHARILLE 458
Query: 316 --------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
NA+I+MYG+CG++ ++ F MP +++VSWN MI+ Y
Sbjct: 459 NIHEANLSNAVINMYGKCGSLDEAMDEFAKMPERDVVSWNTMIATYA 505
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/393 (25%), Positives = 177/393 (45%), Gaps = 80/393 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQL-------------LEVF--------CNWTSMMGMYNV 42
G VH H++ G + ++ + L LEVF +WT+++ Y
Sbjct: 45 GKLVHQHILSSGCGVNRYIQNHLIFMYAKCGCLEDALEVFELLPNPNVFSWTALITAYAK 104
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G+ E++ LF M G +PD FV V ACS GK ++D + E V
Sbjct: 105 EGHLREVLGLFRKMQLDGTKPDAFVFSTVLTACSSAGALNEGKAIHDCAVLAGME-TQVV 163
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+++L+ KCGR+ +FE ++ +++LV
Sbjct: 164 GNAIVNLYGKCGRVHEAKAVFE------------------------------RLPERNLV 193
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SWNA++A A G ++ + M++ ++PN + V+ AC+ + + GK+ H
Sbjct: 194 SWNALIAANAQNGHCKDAMQVFHLMDL-DGSVRPNDATFVSVVDACSNLLDLPRGKSTHE 252
Query: 223 YVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
++R +++ CG V + VF ++S+R+VV W +I A+ + G +
Sbjct: 253 RIIRTGFDSYLFVGNSLVNMYGKCGSVDRARLVFEKMSSRNVVSWTVMIWAYAQQGFIRA 312
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALID 320
A DL + + + +PN VT ++V+ +CL+ LP+ G + + + L+
Sbjct: 313 AFDLYKRM---DCEPNAVTFMAVMDSCLRPEDLPRAEQIHAHMVASGFDSDAVLQVCLVT 369
Query: 321 MYGRCGAIQKSRKIFVLMPHK--NLVSWNVMIS 351
MYG+CG++ + IF + + N V+WN MIS
Sbjct: 370 MYGKCGSVDSAWSIFENLKERSNNAVTWNAMIS 402
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 128/245 (52%), Gaps = 24/245 (9%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
+ N LI YAKC L+ + F + ++ SW A++ YA G EV L +M++
Sbjct: 63 IQNHLIFMYAKCGCLEDALEVFELLPNPNVFSWTALITAYAKEGHLREVLGLFRKMQLDG 122
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHG----------YVLRHHIHLSTACGFVICS 241
T +P+ S VL AC+ + GKAIH V ++L CG V +
Sbjct: 123 T--KPDAFVFSTVLTACSSAGALNEGKAIHDCAVLAGMETQVVGNAIVNLYGKCGRVHEA 180
Query: 242 CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV-IVANVKPNTVTIVSVLPACLK 300
+VF +L R++V WN++I+A ++G DA+ + + + +V+PN T VSV+ AC
Sbjct: 181 KAVFERLPERNLVSWNALIAANAQNGHCKDAMQVFHLMDLDGSVRPNDATFVSVVDACSN 240
Query: 301 LAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L LP+G T FV N+L++MYG+CG++ ++R +F M +N+VSW VM
Sbjct: 241 LLDLPRGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVDRARLVFEKMSSRNVVSWTVM 300
Query: 350 ISVYG 354
I Y
Sbjct: 301 IWAYA 305
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 84/393 (21%), Positives = 166/393 (42%), Gaps = 77/393 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNV 42
G H +I G + F+G+ L+ ++ +WT M+ Y
Sbjct: 247 GKSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVDRARLVFEKMSSRNVVSWTVMIWAYAQ 306
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G+ +L+ M P+ V +C +D + ++ +M++ F+ +A +
Sbjct: 307 QGFIRAAFDLYKRM---DCEPNAVTFMAVMDSCLRPEDLPRAEQIHAHMVASGFDSDAVL 363
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+ L+ ++ KCG ++ +FE + K + + V
Sbjct: 364 QVCLVTMYGKCGSVDSAWSIFENL----------------------------KERSNNAV 395
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+WNAM++G A G ++ +ME+ ++PN+++ L AC+ + + G+ +H
Sbjct: 396 TWNAMISGLAQHGESKQALECFWKMEL--EGVRPNSVTYLASLEACSSLNDLTRGRQLHA 453
Query: 223 YVLRHHIH---LSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
+L +IH LS A CG + + F ++ RDVV WN++I+ + + G A
Sbjct: 454 RILLENIHEANLSNAVINMYGKCGSLDEAMDEFAKMPERDVVSWNTMIATYAQHGSGRQA 513
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------------LGTGSFVWNALI 319
L+ + + + + T + + AC + +L G L V AL+
Sbjct: 514 LEFFKQMDLEGWTTDRATYLGAIDACGSVPSLALGKTIHSIVATAAPCLEQDPGVATALV 573
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
MY RCG++ ++ +F +NLV+W+ +I+
Sbjct: 574 TMYARCGSLHDAKSVFWRSHSRNLVTWSNLIAA 606
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/382 (22%), Positives = 163/382 (42%), Gaps = 81/382 (21%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVF-----------------------CNWTSMMGMYNV 42
Q+HAH++ G + A L L+ ++ W +M+
Sbjct: 347 QIHAHMVASGFDSDAVLQVCLVTMYGKCGSVDSAWSIFENLKERSNNAVTWNAMISGLAQ 406
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G ++ + F+ M +GVRP+ +ACS L D G+ ++ +
Sbjct: 407 HGESKQALECFWKMELEGVRPNSVTYLASLEACSSLNDLTRGRQLHARI----------- 455
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L E + + L +N++I+ Y KC L + +F+K+ ++D+V
Sbjct: 456 -------------------LLENIHEANL-SNAVINMYGKCGSLDEAMDEFAKMPERDVV 495
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SWN M+A YA G + +M++ + + G + AC V + LGK IH
Sbjct: 496 SWNTMIATYAQHGSGRQALEFFKQMDL--EGWTTDRATYLGAIDACGSVPSLALGKTIHS 553
Query: 223 YV------LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
V L ++TA CG + + SVF + +R++V W+++I+A + G+
Sbjct: 554 IVATAAPCLEQDPGVATALVTMYARCGSLHDAKSVFWRSHSRNLVTWSNLIAACAQHGRE 613
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNA 317
+ALDL R++ + KP+ +T +++ AC + + G + +
Sbjct: 614 NEALDLFREMQLQGTKPDALTFSTLVAACSRRGVVKDGVFYFVSMVEDYSIPASEDHFGG 673
Query: 318 LIDMYGRCGAIQKSRKIFVLMP 339
++D+ GR G ++++ ++ P
Sbjct: 674 MVDLLGRAGWLEEAEQVMRKNP 695
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 91/190 (47%), Gaps = 23/190 (12%)
Query: 184 LDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL-----------RHHIHLS 232
+++++ +QP + +L C + K GK +H ++L H I +
Sbjct: 14 INQLKKSSESLQP--ARYASLLQKCTEQKSAAAGKLVHQHILSSGCGVNRYIQNHLIFMY 71
Query: 233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
CG + + VF L +V W ++I+A+ + G + + L L R + + KP+
Sbjct: 72 AKCGCLEDALEVFELLPNPNVFSWTALITAYAKEGHLREVLGLFRKMQLDGTKPDAFVFS 131
Query: 293 SVLPACLKLAALPQGLG----------TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
+VL AC AL +G V NA++++YG+CG + +++ +F +P +N
Sbjct: 132 TVLTACSSAGALNEGKAIHDCAVLAGMETQVVGNAIVNLYGKCGRVHEAKAVFERLPERN 191
Query: 343 LVSWNVMISV 352
LVSWN +I+
Sbjct: 192 LVSWNALIAA 201
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 304 LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L G G ++ N LI MY +CG ++ + ++F L+P+ N+ SW +I+ Y
Sbjct: 53 LSSGCGVNRYIQNHLIFMYAKCGCLEDALEVFELLPNPNVFSWTALITAYA 103
>gi|147804811|emb|CAN64701.1| hypothetical protein VITISV_037299 [Vitis vinifera]
Length = 1111
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/345 (28%), Positives = 178/345 (51%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ Y+ +G+ E +++F+ M+ G+ PD V + + S RV
Sbjct: 635 SWTSMISAYSRMGWATECIDMFWEMLVSGIYPDGIVISCMLSSFS--NSMRV-------- 684
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
FE A L I+ D +V N+L+ Y K +LK++
Sbjct: 685 ----FEAKA-----FHGLIIR-----------RHYTLDQMVQNALLSMYCKFGFLKLAEK 724
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +++ +WN M++GY G + L EM+ + ++ ++ SL V+++C+Q+
Sbjct: 725 FFGRVNEQNFEAWNLMVSGYGKIGLIMKCIGLFREMQCL--GIESDSNSLVSVVSSCSQL 782
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
L ++IH Y++++ I + G + + +F ++ RD+V WN++I
Sbjct: 783 GATHLARSIHCYMIKNLMDENVSVNNSLIDMYGKSGNLTIARRIFCRIP-RDIVTWNTLI 841
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTGSFV 314
S++ G +AL L +++ ++KPN+ T+V VL AC LA+L +G + G F
Sbjct: 842 SSYAHCGHFAEALSLYDKMVLEDLKPNSATLVXVLSACSHLASLEEGEKVHNYINGGKFE 901
Query: 315 WN-----ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+N ALIDMY +CG ++KSR+IF M +++++WNVMIS YG
Sbjct: 902 FNLSIATALIDMYAKCGQLEKSREIFNSMHERDVITWNVMISGYG 946
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 125/236 (52%), Gaps = 25/236 (10%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
MD++ VNNSLID Y K L ++ F +I +D+V+WN +++ YA G E +L D
Sbjct: 800 MDENVSVNNSLIDMYGKSGNLTIARRIFCRIP-RDIVTWNTLISSYAHCGHFAEALSLYD 858
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA------- 234
+M + D++PN+ +L VL+AC+ + ++ G+ +H Y+ ++ ++TA
Sbjct: 859 KM--VLEDLKPNSATLVXVLSACSHLASLEEGEKVHNYINGGKFEFNLSIATALIDMYAK 916
Query: 235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV 294
CG + S +FN + RDV+ WN +IS + G A++ + + ++ KPN +T ++V
Sbjct: 917 CGQLEKSREIFNSMHERDVITWNVMISGYGMHGDARSAIEXFQQMEESSAKPNGLTFLAV 976
Query: 295 LPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
L AC + +G + + ++D+ GR G +Q++ + + MP
Sbjct: 977 LSACAHAGLVKEGKYLFGKMQDYSVAPNLKHYACMVDLLGRSGNLQEAEALVLSMP 1032
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 134/251 (53%), Gaps = 25/251 (9%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
MD +V +SL+ Y+KC + +H F ++ KD++SW +M++ Y+ G+ E ++
Sbjct: 598 MDYSQVVQSSLLSMYSKCGNPEEAHRSFCEVLNKDIISWTSMISAYSRMGWATECIDMF- 656
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH---------LSTAC- 235
EM+ + + P+ I +S +L++ + V KA HG ++R H LS C
Sbjct: 657 -WEMLVSGIYPDGIVISCMLSSFSNSMRVFEAKAFHGLIIRRHYTLDQMVQNALLSMYCK 715
Query: 236 -GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV 294
GF+ + F +++ ++ WN ++S + + G ++ + L R++ ++ ++ ++VSV
Sbjct: 716 FGFLKLAEKFFGRVNEQNFEAWNLMVSGYGKIGLIMKCIGLFREMQCLGIESDSNSLVSV 775
Query: 295 LPACLKLAA-----------LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
+ +C +L A + + V N+LIDMYG+ G + +R+IF +P +++
Sbjct: 776 VSSCSQLGATHLARSIHCYMIKNLMDENVSVNNSLIDMYGKSGNLTIARRIFCRIP-RDI 834
Query: 344 VSWNVMISVYG 354
V+WN +IS Y
Sbjct: 835 VTWNTLISSYA 845
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 89/190 (46%), Gaps = 32/190 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +++ Y G++ E ++L+ M+ + ++P+ V ACS L G+ V++Y+
Sbjct: 837 WNTLISSYAHCGHFAEALSLYDKMVLEDLKPNSATLVXVLSACSHLASLEEGEKVHNYIN 896
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
KFE N + L+D++ KCG++E + +F M
Sbjct: 897 GGKFEFNLSIATALIDMYAKCGQLEKSREIFNSMH------------------------- 931
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
++D+++WN M++GY + G +ME ++ +PN ++ VL+ACA
Sbjct: 932 -----ERDVITWNVMISGYGMHGDARSAIEXFQQME--ESSAKPNGLTFLAVLSACAHAG 984
Query: 213 GVKLGKAIHG 222
VK GK + G
Sbjct: 985 LVKEGKYLFG 994
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/352 (23%), Positives = 150/352 (42%), Gaps = 59/352 (16%)
Query: 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
M VL Y+E+ V K PD + +VYK E + + V ++ ++ G
Sbjct: 417 MEKVLDYFEKAVGSV-----KKWNPDEKLVREVYKNLEEQGNIEGAEKV---LVILRKAG 468
Query: 99 NACVK--RPLLDLFIKCGRMEITSGLFE-----EMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + LL + K G+M + + EMD++ + LI +K C
Sbjct: 469 HVSTEIYNWLLRAYAKAGKMPLIVAEWMKKDKVEMDEE---THRLIKETSKM-------C 518
Query: 152 KFSKIKQ------KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNTISLSGV 204
++ +++ W + G + G L EM I D +PN +L G
Sbjct: 519 XVQRLDPLLCICIRNVEFWRRHMNGESKMGLE-----CLCEMHRIGGDGERPNFRTLEGG 573
Query: 205 LAACAQVKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDV 253
AC + + G+ +HG V++ + S + CG + F ++ +D+
Sbjct: 574 FQACGNLGALLEGRCLHGLVVKTGMDYSQVVQSSLLSMYSKCGNPEEAHRSFCEVLNKDI 633
Query: 254 VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI---VSVLPACLKL--AALPQGL 308
+ W S+ISA+ R G + +D+ +++V+ + P+ + I +S +++ A GL
Sbjct: 634 ISWTSMISAYSRMGWATECIDMFWEMLVSGIYPDGIVISCMLSSFSNSMRVFEAKAFHGL 693
Query: 309 ------GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V NAL+ MY + G ++ + K F + +N +WN+M+S YG
Sbjct: 694 IIRRHYTLDQMVQNALLSMYCKFGFLKLAEKFFGRVNEQNFEAWNLMVSGYG 745
>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 1047
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 155/343 (45%), Gaps = 54/343 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W M+ Y +L E +F M +G+ P+ F P + + CS L+ +G+ ++ ++
Sbjct: 441 WNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVL 500
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F+ N V L+D++ K G+++ LK+
Sbjct: 501 KTGFQFNVYVSSVLIDMYAKLGKLD--------------------------HALKI---- 530
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++K+KD+VSW AM+AGYA E NL EM+ + + I + ++ACA ++
Sbjct: 531 FRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQ--DQGIHSDNIGFASAISACAGIQ 588
Query: 213 GVKLGKAIH------GY-----VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ G+ IH GY V + L CG V + F+++ ++D + WNS+IS
Sbjct: 589 ALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLIS 648
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTI-----------VSVLPACLKLAALPQGLGT 310
F +SG +AL L + A + N+ T L + + G +
Sbjct: 649 GFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDS 708
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ V N LI +Y +CG I + + F MP KN +SWN M++ Y
Sbjct: 709 ETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGY 751
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/329 (29%), Positives = 150/329 (45%), Gaps = 53/329 (16%)
Query: 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL 107
++ LF M+ + V+PD V + C G DV + CV+
Sbjct: 152 RVLGLFRRMLQEKVKPDERTYAGVLRGCG-------GGDVPFH----------CVE---- 190
Query: 108 DLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAM 167
K IT G + V N LID Y K +L + F ++++D VSW AM
Sbjct: 191 ----KIHARTITHGY----ENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAM 242
Query: 168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH 227
L+G + G EE L +M + + P S VL+AC +V+ K+G+ +HG VL+
Sbjct: 243 LSGLSQSGCEEEAVLLFCQMHT--SGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQ 300
Query: 228 HIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL 276
L T G I + VFN + RD V +NS+IS + G AL+L
Sbjct: 301 GFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELF 360
Query: 277 RDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWNALIDMYGRC 325
+ + + +KP+ VT+ S+L AC + AL G+ + + AL+D+Y +C
Sbjct: 361 KKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKC 420
Query: 326 GAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
I+ + + F+ +N+V WNVM+ YG
Sbjct: 421 SDIKTAHEFFLSTETENVVLWNVMLVAYG 449
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/383 (23%), Positives = 167/383 (43%), Gaps = 76/383 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++LG Q+H ++ G + ++ S L++++ +WT+M+
Sbjct: 489 VDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAG 548
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y + E +NLF M D+G+ D+ AC+ ++ G+ ++
Sbjct: 549 YAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIH---------AQ 599
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
ACV SG D V N+L+ YA+C ++ ++ F KI K
Sbjct: 600 ACV-----------------SGY----SDDLSVGNALVSLYARCGKVRDAYFAFDKIFSK 638
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D +SWN++++G+A G EE +L +M + + N+ + ++A A V VKLGK
Sbjct: 639 DNISWNSLISGFAQSGHCEEALSLFSQMS--KAGQEINSFTFGPAVSAAANVANVKLGKQ 696
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH +++ I L CG + + F ++ ++ + WN++++ + + G
Sbjct: 697 IHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGH 756
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WN 316
AL L D+ V PN VT V VL AC + + +G+ + +
Sbjct: 757 GFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYA 816
Query: 317 ALIDMYGRCGAIQKSRKIFVLMP 339
++D+ GR G + ++R+ MP
Sbjct: 817 CVVDLLGRSGLLSRARRFVEEMP 839
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/392 (22%), Positives = 175/392 (44%), Gaps = 75/392 (19%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNVLG 44
++HA I G E F+ + L++++ +W +M+ + G
Sbjct: 191 KIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSG 250
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
EE V LF M GV P ++ V AC++++ Y+VG+ ++ ++ F
Sbjct: 251 CEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFS------- 303
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
L+ ++ C N+L+ Y++ + F+ + Q+D VS+
Sbjct: 304 --LETYV-C--------------------NALVTLYSRLGNFIPAEQVFNAMLQRDEVSY 340
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
N++++G + G+ ++ L +M + ++P+ ++++ +L+AC+ V + +GK H Y
Sbjct: 341 NSLISGLSQQGYSDKALELFKKMCL--DCLKPDCVTVASLLSACSSVGALLVGKQFHSYA 398
Query: 225 LRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
++ + L C + + F T +VV+WN ++ A+ + ++
Sbjct: 399 IKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESF 458
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTG----SFVWNALIDMY 322
+ + + ++PN T S+L C L A+ G L TG +V + LIDMY
Sbjct: 459 KIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMY 518
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ G + + KIF + K++VSW MI+ Y
Sbjct: 519 AKLGKLDHALKIFRRLKEKDVVSWTAMIAGYA 550
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 130/325 (40%), Gaps = 55/325 (16%)
Query: 50 VNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDL 109
+N +LM ++GVR + + C + G ++ ++ + F + L+DL
Sbjct: 53 INFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDL 112
Query: 110 FIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLA 169
+I G ++ +F+EM + L WN +L
Sbjct: 113 YIAFGDLDGAVTVFDEM------------------------------PVRPLSCWNKVLH 142
Query: 170 GYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ-------VKGVKLGKAIHG 222
+ G V L M+Q ++P+ + +GVL C V+ + HG
Sbjct: 143 RFVAGKMAGRVLGLF--RRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHG 200
Query: 223 Y-----VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLR 277
Y V I L GF+ + VF+ L RD V W +++S +SG +A+ L
Sbjct: 201 YENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFC 260
Query: 278 DVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCG 326
+ + V P SVL AC K+ L QG ++V NAL+ +Y R G
Sbjct: 261 QMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLG 320
Query: 327 AIQKSRKIFVLMPHKNLVSWNVMIS 351
+ ++F M ++ VS+N +IS
Sbjct: 321 NFIPAEQVFNAMLQRDEVSYNSLIS 345
>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
mitochondrial [Vitis vinifera]
gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
Length = 688
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/353 (25%), Positives = 163/353 (46%), Gaps = 59/353 (16%)
Query: 27 LEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKD 86
E +W +++ ++ + +++ LF M+ +G D F KAC L ++ K
Sbjct: 75 FENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLFQGAKL 134
Query: 87 VYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL 146
+ I ++ EG+ V L++++ + G +E +FEE
Sbjct: 135 FHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEE--------------------- 173
Query: 147 KVSHCKFSKIKQKDLVSWNAMLAGYALGGFREE--VTNLLDEMEMIQTDMQPNTISLSGV 204
+ K+ V W M+ G+ F EE V L M ++ P + G+
Sbjct: 174 ---------VPLKNSVIWGVMIKGHL--NFSEEFGVFELFSRMRRSGFELDPFVV--EGL 220
Query: 205 LAACAQVKGVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRD 252
+ AC V K GK HG ++ + + + CGF+ + +F ++S RD
Sbjct: 221 IQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRD 280
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS 312
VVVW++II+ F R+G+ ++++ + R ++ +V PN+VT S++ AC L +L QG
Sbjct: 281 VVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHG 340
Query: 313 FV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
++ + + IDMY +CG I + ++F +P KN+ SW+ MI+ +G
Sbjct: 341 YMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFG 393
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 153/334 (45%), Gaps = 57/334 (17%)
Query: 43 LGYYEE--IVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
L + EE + LF M G D FV + +AC + + GK F G
Sbjct: 190 LNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGK---------TFHG-L 239
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
C+K+ +D +F + SL+D Y KC +L + F +I +D
Sbjct: 240 CIKKNFID-------------------SNFFLQTSLVDMYMKCGFLDFALKLFEEISYRD 280
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+V W+A++AG+A G E ++ +M + + PN+++ + ++ AC+ + +K G+++
Sbjct: 281 VVVWSAIIAGFARNGRALESISMFRQM--LADSVTPNSVTFASIVLACSSLGSLKQGRSV 338
Query: 221 HGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
HGY++R+ + L CG ++ + VF Q+ ++V W+++I+ F G
Sbjct: 339 HGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLC 398
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPAC------------LKLAALPQGLGTGSFVWNA 317
+AL+L ++ N PN+VT VSVL AC K + G+ +
Sbjct: 399 AEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGITPVEEHYAC 458
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMI 350
++D+ GR G I ++ MP + S W ++
Sbjct: 459 MVDLLGRAGKIDEALSFINNMPTEPGASAWGALL 492
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 62/126 (49%), Gaps = 11/126 (8%)
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
G + + FN ++ ++ WN+I+++ ++ D L L + ++ ++ +V +
Sbjct: 61 GSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAV 120
Query: 296 PACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLV 344
AC L+ A+ L +V AL+++Y G+++++ K+F +P KN V
Sbjct: 121 KACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSV 180
Query: 345 SWNVMI 350
W VMI
Sbjct: 181 IWGVMI 186
>gi|357116286|ref|XP_003559913.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Brachypodium distachyon]
Length = 692
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/363 (27%), Positives = 170/363 (46%), Gaps = 54/363 (14%)
Query: 14 CGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYK 73
C E + S L WT+M+G G + + ++LF M +G D + V
Sbjct: 196 CLGEARSVFESMLERDLAAWTAMIGGAVHAGDWLDAMSLFSRMRSEGFLADSVIIATVIP 255
Query: 74 ACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN 133
AC K+ R G ++ C ++CG + D V+
Sbjct: 256 ACGRAKELRTGMVLH-----------GCA--------VRCG-----------VGDDTCVS 285
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
N+L+D Y KC L ++ F I KD+VSW+ ++AGY+ G NL EM+
Sbjct: 286 NALVDMYCKCGCLGMADRVFWSIGFKDVVSWSTLIAGYSQNGKDHVSVNLF--TEMVTAG 343
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH-----------HIHLSTACGFVICSC 242
++PN+ +++ +L + +++K + GK IHG+ LR+ I + G + +
Sbjct: 344 LKPNSNTMASILPSLSEMKLFRHGKEIHGFSLRNGFDQSKFLGSAFIDFYSRQGSIREAE 403
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
V + RD+V+WNS+++ + +G AL R + +P+ VT+VSVLP C +
Sbjct: 404 IVLELMPKRDLVIWNSMVAGYAVNGNTDSALCAFRALQKVGFRPDHVTVVSVLPVCNHHS 463
Query: 303 ALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
L QG ++ V NALIDMY +C ++K ++IF L+ ++ ++N +IS
Sbjct: 464 RLIQGKELHAYVVRHYMSSVCSVSNALIDMYCKCCCLEKGKEIFQLVTDRDTATYNTLIS 523
Query: 352 VYG 354
+G
Sbjct: 524 SFG 526
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/373 (23%), Positives = 167/373 (44%), Gaps = 52/373 (13%)
Query: 5 IQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMI-DKGVRP 63
+ +A L G L G + F ++ G+ + G + E + ++ M+ D V
Sbjct: 82 VHAYARLGEAGRALSVLDGMPMRNSFAWNAAIKGLVDS-GQFAEALETYWAMVRDGSVAA 140
Query: 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLF 123
D F P V KAC+ L G+ M+ E + +F++C
Sbjct: 141 DGFTYPPVIKACAALGVVEQGR-----MVRENVEADVVRGVVAPSVFVQC---------- 185
Query: 124 EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNL 183
+L+D +AKC L + F + ++DL +W AM+ G G + +L
Sbjct: 186 -----------ALVDMFAKCGCLGEARSVFESMLERDLAAWTAMIGGAVHAGDWLDAMSL 234
Query: 184 LDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST---------- 233
M +++ ++ V+ AC + K ++ G +HG +R + T
Sbjct: 235 FSRMR--SEGFLADSVIIATVIPACGRAKELRTGMVLHGCAVRCGVGDDTCVSNALVDMY 292
Query: 234 -ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
CG + + VF + +DVV W+++I+ + ++G+ +++L +++ A +KPN+ T+
Sbjct: 293 CKCGCLGMADRVFWSIGFKDVVSWSTLIAGYSQNGKDHVSVNLFTEMVTAGLKPNSNTMA 352
Query: 293 SVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK 341
S+LP+ ++ +L G F+ +A ID Y R G+I+++ + LMP +
Sbjct: 353 SILPSLSEMKLFRHGKEIHGFSLRNGFDQSKFLGSAFIDFYSRQGSIREAEIVLELMPKR 412
Query: 342 NLVSWNVMISVYG 354
+LV WN M++ Y
Sbjct: 413 DLVIWNSMVAGYA 425
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/377 (21%), Positives = 164/377 (43%), Gaps = 76/377 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ G+ +H + CGV + + L++++C +W++++
Sbjct: 263 LRTGMVLHGCAVRCGVGDDTCVSNALVDMYCKCGCLGMADRVFWSIGFKDVVSWSTLIAG 322
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y+ G VNLF M+ G++P+ + + SE+K +R GK+++ + + F
Sbjct: 323 YSQNGKDHVSVNLFTEMVTAGLKPNSNTMASILPSLSEMKLFRHGKEIHGFSLRNGF--- 379
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
DQ + ++ IDFY++ ++ + + ++
Sbjct: 380 ---------------------------DQSKFLGSAFIDFYSRQGSIREAEIVLELMPKR 412
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
DLV WN+M+AGYA+ G + ++ + +P+ +++ VL C + GK
Sbjct: 413 DLVIWNSMVAGYAVNGNTDSALCAFRALQKV--GFRPDHVTVVSVLPVCNHHSRLIQGKE 470
Query: 220 IHGYVLRHHIH----LSTACGFVICSC-------SVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H YV+RH++ +S A + C C +F ++ RD +N++IS+F + G
Sbjct: 471 LHAYVVRHYMSSVCSVSNALIDMYCKCCCLEKGKEIFQLVTDRDTATYNTLISSFGKHGH 530
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL------------GTGSFVWN 316
+A+ L + + P+ VT V++L +C + +GL G ++
Sbjct: 531 EDEAIMLFDLMKRDGIAPDKVTFVALLSSCSHAGLIEKGLHFYDIMLQDYNISPGKEHYS 590
Query: 317 ALIDMYGRCGAIQKSRK 333
++D+Y R G + + K
Sbjct: 591 CVVDLYSRSGKLDDAWK 607
>gi|413950564|gb|AFW83213.1| hypothetical protein ZEAMMB73_277915 [Zea mays]
Length = 611
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/400 (26%), Positives = 176/400 (44%), Gaps = 79/400 (19%)
Query: 1 MELGIQVHAHLIVCGVELC--AFLGSQLLEVFCN-----------------------WTS 35
+ G QVHA L+ G C A++G++L + W +
Sbjct: 86 LRAGRQVHAALVKRGTYYCRNAYVGTKLAVCYARCGALDDAERAFGALPERDRNAFAWAA 145
Query: 36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIK 95
++G+++ G + + F M++ GV D+FV P V KAC+ L G+ V+
Sbjct: 146 VIGLWSRAGLHGRALAGFVAMLEAGVPADNFVVPTVIKACAGLGLAGTGRAVH------- 198
Query: 96 FEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSK 155
G+AC K G E V +SL+D Y KC ++ + F
Sbjct: 199 --GHAC----------KAGVAECV-----------YVMSSLVDLYGKCGEVEDARAVFDA 235
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
+ ++ +VSWN ML Y G +E +L EM + + P +S+ L+A A ++ +
Sbjct: 236 MPERTVVSWNTMLMAYIHNGRIDEAVDLFYEMRV--EGVLPTRVSIVSFLSASAGLEAID 293
Query: 216 LGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
G+ H + IH G V + +VF Q+ RD V WN +I+ +
Sbjct: 294 GGRQGHAVAVSSGLEMDVILGSSMIHFYCKVGLVEAAEAVFEQMEGRDAVAWNLMIAGYF 353
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSF 313
+ GQ+ AL R ++ A++K + VT+ S++ AC+K A+ GL +
Sbjct: 354 QDGQIDKALHTCRRMLEADLKFDCVTLASIIMACVKSCITLLGIAAHGYAVRNGLDSDKT 413
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V LID+Y G I+++R++F +N V W ++S Y
Sbjct: 414 VAAGLIDLYASTGRIEQARRVFNATSPRNPVVWKALVSAY 453
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 87/385 (22%), Positives = 165/385 (42%), Gaps = 92/385 (23%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNV 42
G VH H GV C ++ S L++++ +W +M+ Y
Sbjct: 194 GRAVHGHACKAGVAECVYVMSSLVDLYGKCGEVEDARAVFDAMPERTVVSWNTMLMAYIH 253
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G +E V+LFY M +GV P A + L+ G+ +G+A
Sbjct: 254 NGRIDEAVDLFYEMRVEGVLPTRVSIVSFLSASAGLEAIDGGR-----------QGHA-- 300
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+ ++SGL + D ++ +S+I FY K ++ + F +++ +D V
Sbjct: 301 -------------VAVSSGL----EMDVILGSSMIHFYCKVGLVEAAEAVFEQMEGRDAV 343
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+WN M+AGY G ++ + M++ D++ + ++L+ ++ AC + LG A HG
Sbjct: 344 AWNLMIAGYFQDGQIDKALHTC--RRMLEADLKFDCVTLASIIMACVKSCITLLGIAAHG 401
Query: 223 YVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
Y +R+ I L + G + + VFN S R+ VVW +++SA+V G +
Sbjct: 402 YAVRNGLDSDKTVAAGLIDLYASTGRIEQARRVFNATSPRNPVVWKALVSAYVDCGMNSE 461
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKS 331
A +L+ + QG+ + + W+++I + + G ++ +
Sbjct: 462 ARNLVNQTQL------------------------QGMSSNATCWDSVISAFIQKGQLEDA 497
Query: 332 RKIFVLM----PHKNLVSWNVMISV 352
+F M NL +W+++IS
Sbjct: 498 VDMFSEMLLTKTRPNLRTWSLLISA 522
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/290 (19%), Positives = 114/290 (39%), Gaps = 63/290 (21%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G Q HA + G+E+ LGS ++ +C W M+ Y
Sbjct: 295 GRQGHAVAVSSGLEMDVILGSSMIHFYCKVGLVEAAEAVFEQMEGRDAVAWNLMIAGYFQ 354
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G ++ ++ M++ ++ D + AC + +G + Y + + + V
Sbjct: 355 DGQIDKALHTCRRMLEADLKFDCVTLASIIMACVKSCITLLGIAAHGYAVRNGLDSDKTV 414
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKC------------------ 143
L+DL+ GR+E +F ++ +V +L+ Y C
Sbjct: 415 AAGLIDLYASTGRIEQARRVFNATSPRNPVVWKALVSAYVDCGMNSEARNLVNQTQLQGM 474
Query: 144 ------------RYLKVSHCK-----FSKI----KQKDLVSWNAMLAGYALGGFREEVTN 182
+++ + FS++ + +L +W+ +++ + G R+EVT+
Sbjct: 475 SSNATCWDSVISAFIQKGQLEDAVDMFSEMLLTKTRPNLRTWSLLISALSQNGMRQEVTS 534
Query: 183 LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS 232
+ +M+ +++ P TI S +L A V GKAIH V++ + LS
Sbjct: 535 ICCKMQEVESAPSP-TIYSSAIL-AVKTAASVDYGKAIHACVVKKGLLLS 582
>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Glycine max]
Length = 780
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 107/393 (27%), Positives = 174/393 (44%), Gaps = 74/393 (18%)
Query: 5 IQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNVL 43
+ VHA++ G + AF+G+ L++ + +WT M+ Y
Sbjct: 124 LSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAEN 183
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
+E+ + LF M G RP++F K+C+ L+ ++VGK V+ + + ++ + V
Sbjct: 184 YCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVG 243
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
LL+L+ K G + FEEM +D DL+
Sbjct: 244 IALLELYTKSGEIAEAQQFFEEMPKD------------------------------DLIP 273
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
W+ M++ YA +E L M + + PN + + VL ACA + + LG IH
Sbjct: 274 WSLMISRYAQSDKSKEALELFCRMRQ-SSVVVPNNFTFASVLQACASLVLLNLGNQIHSC 332
Query: 224 VLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
VL+ ++ +S A CG + S +F + ++ V WN+II +V+ G A
Sbjct: 333 VLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKA 392
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDM 321
L+L +++ +++P VT SVL A L AL G S V N+LIDM
Sbjct: 393 LNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDM 452
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
Y +CG I +R F M ++ VSWN +I Y
Sbjct: 453 YAKCGRIDDARLTFDKMDKQDEVSWNALICGYS 485
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 131/287 (45%), Gaps = 44/287 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVR-PDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W+ M+ Y +E + LF M V P++F V +AC+ L +G ++
Sbjct: 274 WSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIH--- 330
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+CV +K G +D + V+N+L+D YAKC ++ S
Sbjct: 331 --------SCV--------LKVG-----------LDSNVFVSNALMDVYAKCGEIENSVK 363
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ +K+ V+WN ++ GY G E+ NL M + D+QP ++ S VL A A +
Sbjct: 364 LFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNM--LGLDIQPTEVTYSSVLRASASL 421
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ G+ IH ++ I + CG + + F+++ +D V WN++I
Sbjct: 422 VALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALI 481
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
+ G ++AL+L + +N KPN +T V VL AC L +G
Sbjct: 482 CGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKG 528
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 139/320 (43%), Gaps = 75/320 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+ LG Q+H+ ++ G++ F+ + L++V+ W +++
Sbjct: 323 LNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVG 382
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y LG E+ +NLF M+ ++P V +A + L G+ ++ I +
Sbjct: 383 YVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMY--- 439
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
++D +V NSLID YAKC + + F K+ ++
Sbjct: 440 ---------------------------NKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQ 472
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D VSWNA++ GY++ G E NL D M+ Q++ +PN ++ GVL+AC+ + G+A
Sbjct: 473 DEVSWNALICGYSIHGLGMEALNLFDMMQ--QSNSKPNKLTFVGVLSACSNAGLLDKGRA 530
Query: 220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
+L+ + G C + +VW RSGQ +A+ L+ ++
Sbjct: 531 HFKSMLQDY-------GIEPC-------IEHYTCMVW-----LLGRSGQFDEAVKLIGEI 571
Query: 280 IVANVKPNTVTIVSVLPACL 299
+P+ + ++L AC+
Sbjct: 572 ---PFQPSVMVWRALLGACV 588
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 83/180 (46%), Gaps = 22/180 (12%)
Query: 197 NTISLSGVLAACAQVKGVKLGKAIHGYVLRH---------HIHLSTAC--GFVICSCSVF 245
++ S + +L + + GK++H ++L+H +I L+T GF+ + +F
Sbjct: 2 DSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLF 61
Query: 246 NQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP--------- 296
+++ + V + ++ F RS Q A LL + + N ++L
Sbjct: 62 DEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLAD 121
Query: 297 ACLKLAALPQGLG--TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
CL + A LG +FV ALID Y CG + +R++F + K++VSW M++ Y
Sbjct: 122 TCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYA 181
>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
Group]
gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
Length = 651
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/348 (23%), Positives = 172/348 (49%), Gaps = 35/348 (10%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMI--DKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
+W +++G Y G E + LF+ M+ D VRPD C +++D +G+ ++
Sbjct: 193 SWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELGRRLHG 252
Query: 90 YMISIKFEGNACVKR---PLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRY 145
++ S +G +C R L+D++IKCG +E+ +FE ++ +V+ ++I +AK
Sbjct: 253 FVDS---DGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGL 309
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
+ + F ++ ++D+ WNA++ GY +E +L EM+ + + P+ I++ +L
Sbjct: 310 MDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQ--EASVVPDEITMVNLL 367
Query: 206 AACAQVKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVV 254
AC+Q+ +++G +H Y+ +H + S A CG + + +F ++ ++ +
Sbjct: 368 TACSQLGALEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNAL 427
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV 314
W ++I G +A++ R +I KP+ +T + VL AC + +G S +
Sbjct: 428 TWTAMICGLANHGHANEAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFFSLM 487
Query: 315 ------------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVM 349
++ +ID+ GR G + ++ ++ MP + V W +
Sbjct: 488 ETKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMEPDAVVWGAI 535
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/361 (22%), Positives = 154/361 (42%), Gaps = 84/361 (23%)
Query: 44 GYYEEIVNLFYLMIDKGV-RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G + L+ ++ G RPDH P + KAC+ L+++ G +++ +
Sbjct: 103 GVVRRCLPLYRALLRSGTARPDHLTFPFLLKACARLREWGYGDAALAHVLRLG------- 155
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+D D V N+ F + ++ + F + +DLV
Sbjct: 156 -----------------------LDSDVFVVNAATHFLSIRGPMEDARRLFDRSPVRDLV 192
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SWN ++ GY G E L M ++P+ +++ ++ C Q++ ++LG+ +HG
Sbjct: 193 SWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELGRRLHG 252
Query: 223 YV----------------------------------LRHHIHLS--------TACGFVIC 240
+V + H +S G +
Sbjct: 253 FVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDD 312
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ VF+++ RDV WN++++ +V+ Q +AL L ++ A+V P+ +T+V++L AC +
Sbjct: 313 ARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQ 372
Query: 301 LAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L AL G+ ++ +LIDMY +CG I+K+ IF +P KN ++W M
Sbjct: 373 LGALEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAM 432
Query: 350 I 350
I
Sbjct: 433 I 433
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 20/126 (15%)
Query: 248 LSTRDVVVWNSIISAFVRS--------GQVVDALDLLRDVIVA-NVKPNTVTIVSVLPAC 298
LS+ +N+ I A S G V L L R ++ + +P+ +T +L AC
Sbjct: 76 LSSLPASAYNAAIRALSLSDDGDRHGHGVVRRCLPLYRALLRSGTARPDHLTFPFLLKAC 135
Query: 299 LKL-------AALPQ----GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
+L AAL GL + FV NA G ++ +R++F P ++LVSWN
Sbjct: 136 ARLREWGYGDAALAHVLRLGLDSDVFVVNAATHFLSIRGPMEDARRLFDRSPVRDLVSWN 195
Query: 348 VMISVY 353
+I Y
Sbjct: 196 TLIGGY 201
>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 579
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 164/343 (47%), Gaps = 53/343 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W SM+ Y+ Y +E++NL+Y MI +G++PD KACS L D +G+ +++ +
Sbjct: 52 WNSMIIAYSRTNYPDEVLNLYYRMISEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAV 111
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ + V +L+L+ K G+ MD+ +V
Sbjct: 112 DFGYGFDVFVVSSVLNLYAKSGK----------MDKAKIV-------------------- 141
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F K+ ++D+VSW M+ G+A G + ++ M+ +T + + + + G++ AC +
Sbjct: 142 FDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKERT--EGDGVVMVGLIQACTSLG 199
Query: 213 GVKLGKAIHGYVLRHHIHLSTAC-----------GFVICSCSVFNQLSTRDVVVWNSIIS 261
K G ++HG+++R +++ G + + VF + + V+ W ++IS
Sbjct: 200 DSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKLELASRVFEGIPYKSVISWGALIS 259
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------- 314
F ++G L L ++ + KP+ V+++S L AC ++ L G +
Sbjct: 260 GFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQVGNLKVGKSLHGHIVKRLYLD 319
Query: 315 ---WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
ALIDMY +CGA+ +R +F + ++L+ WN MIS YG
Sbjct: 320 KVSGTALIDMYAKCGALTFARALFDQIEPRDLILWNAMISSYG 362
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 153/317 (48%), Gaps = 50/317 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ + G + ++++ M + D V + +AC+ L D + G V+ +M
Sbjct: 152 SWTTMITGFAQSGRPLDAIDIYRTMQKERTEGDGVVMVGLIQACTSLGDSKFGLSVHGHM 211
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ EM+ D ++ SLID YAK L+++
Sbjct: 212 VR------------------------------REMNMDNVLQTSLIDMYAKNGKLELASR 241
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F I K ++SW A+++G+A GF + L EM+ + +P+ +SL L+ACAQV
Sbjct: 242 VFEGIPYKSVISWGALISGFAQNGFANKTLASLVEMQ--NSGFKPDLVSLISSLSACAQV 299
Query: 212 KGVKLGKAIHGYVLRHH----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+K+GK++HG++++ I + CG + + ++F+Q+ RD+++WN++IS
Sbjct: 300 GNLKVGKSLHGHIVKRLYLDKVSGTALIDMYAKCGALTFARALFDQIEPRDLILWNAMIS 359
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDM 321
++ G ++AL L + N+ P+ T S+L AC + + G + ++ LID
Sbjct: 360 SYGIHGDGIEALSLFLKMKETNITPDHATFASLLSACSHSGLVEE----GQYWFHVLIDK 415
Query: 322 YGRCGAIQKSRKIFVLM 338
IQ S K + M
Sbjct: 416 ----SKIQPSEKHYACM 428
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 132/262 (50%), Gaps = 33/262 (12%)
Query: 118 ITSGLFEEMDQDFLVNNS---LIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALG 174
+T+GLF F NS LI Y + + + F K+ Q+ + +WN+M+ Y+
Sbjct: 9 LTTGLF------FNDANSIAQLIASYGRINNIIPARNVFEKMPQRSINAWNSMIIAYSRT 62
Query: 175 GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI------HGY----- 223
+ +EV NL MI ++P++ + + L AC+ + + +G+ I GY
Sbjct: 63 NYPDEVLNLY--YRMISEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFDVF 120
Query: 224 VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283
V+ ++L G + + VF+++ RDVV W ++I+ F +SG+ +DA+D+ R +
Sbjct: 121 VVSSVLNLYAKSGKMDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKER 180
Query: 284 VKPNTVTIVSVLPACLKLAALPQGLGT-----------GSFVWNALIDMYGRCGAIQKSR 332
+ + V +V ++ AC L GL + + +LIDMY + G ++ +
Sbjct: 181 TEGDGVVMVGLIQACTSLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKLELAS 240
Query: 333 KIFVLMPHKNLVSWNVMISVYG 354
++F +P+K+++SW +IS +
Sbjct: 241 RVFEGIPYKSVISWGALISGFA 262
>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 939
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 163/345 (47%), Gaps = 56/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ + G EE +NLF M+ + PD F V KACS + G ++++ +
Sbjct: 446 SWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRI 505
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I SGL D V +LID Y KC ++ +
Sbjct: 506 IK--------------------------SGL----GLDSFVGGALIDMYCKCGMIEEAKK 535
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+I+Q+ +VSWNA++AG+ L E+ + EM++ ++P+ + + VL ACA +
Sbjct: 536 IHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFF--YEMLKMSVKPDNFTYAIVLDACANL 593
Query: 212 KGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSII 260
V LGK IHG +++ +H + + CG + S VF + +D V WN++I
Sbjct: 594 ASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPNKDFVTWNAMI 653
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
+ + G +AL + + NV+PN T VS+L AC + + +GL + +
Sbjct: 654 CGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKGLHYFNAMLTEYGL 713
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
++ +ID+ GR G I ++ K+ MP + + V W ++S+
Sbjct: 714 EPQIEHYSCMIDIIGRSGRISEALKLIQEMPFEADAVIWRTLLSI 758
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/397 (23%), Positives = 171/397 (43%), Gaps = 75/397 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMG---MYNVLGYYE---------- 47
+++G Q+HAH + C +G+ L+++ S+ ++N L +
Sbjct: 293 LKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVG 352
Query: 48 --------EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
E + F L++ G+ + + AC+ +K G+ ++ + N
Sbjct: 353 CVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSN 412
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
CV NS++D Y KC L + C F +++++
Sbjct: 413 ICVA------------------------------NSILDMYGKCEALSEACCMFDEMERR 442
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D VSWNA++A + G EE NL M++ M+P+ + VL AC+ + + G
Sbjct: 443 DAVSWNAVIAAHEQNGNEEETLNLF--ASMLRLRMEPDQFTYGSVLKACSSQQALNSGME 500
Query: 220 IHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH +++ + L + CG + + + +++ + +V WN+II+ F
Sbjct: 501 IHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKH 560
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNA 317
DA +++ +VKP+ T VL AC LA++ G L + ++ +
Sbjct: 561 SEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQIIKLELHSDVYITST 620
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L+DMY +CG +Q S +F P+K+ V+WN MI Y
Sbjct: 621 LVDMYSKCGNMQDSALVFEKAPNKDFVTWNAMICGYA 657
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 99/399 (24%), Positives = 173/399 (43%), Gaps = 85/399 (21%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM-- 39
LGIQVH ++ G GS LL+++ W++++
Sbjct: 194 LGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCV 253
Query: 40 ---YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKF 96
++LG + LF M G+ + V+++C+ L +VG ++ + + F
Sbjct: 254 QNDEHILG-----LELFKEMQKVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDF 308
Query: 97 EGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKI 156
+ V LD++ KCG + +F NSL +C
Sbjct: 309 GSDITVGTATLDMYAKCGSLADAQRIF----------NSLPKHSLQC------------- 345
Query: 157 KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKL 216
+NA++ G E ++++ + N ISLSG +ACA +KG
Sbjct: 346 -------YNAIIVGCVRNEKGFEALQFFQ--LLLKSGLGFNEISLSGAFSACASIKGDLD 396
Query: 217 GKAIHGY----VLRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVR 265
G+ +H LR +I ++ + C + +C +F+++ RD V WN++I+A +
Sbjct: 397 GRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQ 456
Query: 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFV 314
+G + L+L ++ ++P+ T SVL AC AL GLG SFV
Sbjct: 457 NGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFV 516
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
ALIDMY +CG I++++KI + + +VSWN +I+ +
Sbjct: 517 GGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGF 555
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 147/304 (48%), Gaps = 26/304 (8%)
Query: 71 VYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ-D 129
+ + CS+ + GK + MI F + + L+ ++++C + +FE+M Q D
Sbjct: 49 IIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKMSQRD 108
Query: 130 FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGF-REEVTNLLDEME 188
+ N++I YA + +++ F ++D+VSWN+ML+G+ G R+ + LD
Sbjct: 109 VISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGR 168
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACG------FVIC-- 240
+ T ++ VL AC+ ++ LG +HG ++R + G + C
Sbjct: 169 SEEVGFDQTTFAV--VLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKR 226
Query: 241 ---SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
S +F+++ ++ V W++II+ V++ + + L+L +++ + + SV +
Sbjct: 227 LDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRS 286
Query: 298 CLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
C L+AL G G+ V A +DMY +CG++ +++IF +P +L +
Sbjct: 287 CAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQCY 346
Query: 347 NVMI 350
N +I
Sbjct: 347 NAII 350
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/302 (22%), Positives = 130/302 (43%), Gaps = 82/302 (27%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G+++H +I G+ L +F+G L++++C +W +++ + +
Sbjct: 498 GMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTL 557
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
L + E+ + FY M+ V+PD+F V AC+ L +GK ++ +I ++ + +
Sbjct: 558 LKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQIIKLELHSDVYI 617
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L+D++ KCG M+ ++ +FE K KD V
Sbjct: 618 TSTLVDMYSKCGNMQDSALVFE------------------------------KAPNKDFV 647
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+WNAM+ GYA G EE + M++ +++PN + +L ACA +
Sbjct: 648 TWNAMICGYAQHGLGEEALGYFERMQL--ENVRPNHATFVSILRACAHM----------- 694
Query: 223 YVLRHHIHLSTACGFVICSCSVFNQLSTR-----DVVVWNSIISAFVRSGQVVDALDLLR 277
GF+ FN + T + ++ +I RSG++ +AL L++
Sbjct: 695 -------------GFIDKGLHYFNAMLTEYGLEPQIEHYSCMIDIIGRSGRISEALKLIQ 741
Query: 278 DV 279
++
Sbjct: 742 EM 743
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 150/345 (43%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W SM+ + G + +++F M + V D V KACS L+D +G V+
Sbjct: 142 SWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGL 201
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
++ + F +D + ++L+D YAKC+ L S
Sbjct: 202 IVRMGFY------------------------------KDVVTGSALLDMYAKCKRLDDSL 231
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
FS+I K+ V W+A++AG L EM+ + + + + V +CA
Sbjct: 232 KIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSI--YASVFRSCAG 289
Query: 211 VKGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ +K+G +H + L+ I + TA CG + + +FN L + +N+I
Sbjct: 290 LSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAI 349
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------ 313
I VR+ + +AL + ++ + + N +++ AC + G S
Sbjct: 350 IVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTL 409
Query: 314 -----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V N+++DMYG+C A+ ++ +F M ++ VSWN +I+ +
Sbjct: 410 RSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAH 454
>gi|242082594|ref|XP_002441722.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
gi|241942415|gb|EES15560.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
Length = 528
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 168/346 (48%), Gaps = 27/346 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
++TS+M ++ L E ++LF ++ G RPD F A S D VG+ V+ +
Sbjct: 80 SFTSLMSLHLQLDNQREAISLFARVVAAGHRPDGFAVVGALSASSGAGDQVVGRAVHGLI 139
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSH 150
+ +G V L+D++ +CG+ E +F+ M +D + S++ Y KC + +
Sbjct: 140 FRLGLDGEVVVGNALIDMYSQCGKFESAVKVFDRMSLKDEVTWGSMLHGYIKCAGVDSAL 199
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ + +V+W A++ G+ G R+ V L M+ +P +++ GVL+ACA
Sbjct: 200 SFFDQVPVRSVVAWTALITGHVQG--RQPVRALELFGRMVLEGHRPTHVTIVGVLSACAD 257
Query: 211 VKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSI 259
+ + LG+ IHGY + + L+ G + + SVF ++ ++D W ++
Sbjct: 258 IGALDLGRVIHGYGSKCNASLNIIVSNALMDMYAKSGHIEMAFSVFQEVQSKDSFTWTTM 317
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----- 314
IS G AL+L +D++ A V PN+VT VSVL AC + +G+ +
Sbjct: 318 ISCCTVQGDGKKALELFQDMLRAGVVPNSVTFVSVLSACSHSGLIEEGIELFDRMRQLYK 377
Query: 315 -------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ +ID+ GR G ++++ + M ++V W ++S
Sbjct: 378 IDPLLEHYGCMIDLLGRGGLLEEAEALIADMNVEPDIVIWRSLLSA 423
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/299 (21%), Positives = 125/299 (41%), Gaps = 59/299 (19%)
Query: 4 GIQVHAHLIVCGVELC-AFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVR 62
G +H ++ GV+ +F + WT+++ + + LF M+ +G R
Sbjct: 183 GSMLHGYIKCAGVDSALSFFDQVPVRSVVAWTALITGHVQGRQPVRALELFGRMVLEGHR 242
Query: 63 PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGL 122
P H V AC+++ +G+ ++ Y G+ C
Sbjct: 243 PTHVTIVGVLSACADIGALDLGRVIHGY-------GSKC--------------------- 274
Query: 123 FEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTN 182
+ +V+N+L+D YAK +++++ F +++ KD +W M++ + G ++
Sbjct: 275 --NASLNIIVSNALMDMYAKSGHIEMAFSVFQEVQSKDSFTWTTMISCCTVQGDGKKALE 332
Query: 183 LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSC 242
L +M++ + PN+++ VL+AC+ H ++ I L
Sbjct: 333 LF--QDMLRAGVVPNSVTFVSVLSACS-----------HSGLIEEGIEL----------F 369
Query: 243 SVFNQLSTRDVVV--WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
QL D ++ + +I R G + +A L+ D+ NV+P+ V S+L ACL
Sbjct: 370 DRMRQLYKIDPLLEHYGCMIDLLGRGGLLEEAEALIADM---NVEPDIVIWRSLLSACL 425
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 23/168 (13%)
Query: 209 AQVKGVKLGKAIHGYVLRHHIH---LSTAC---------GFVICSCSVFNQLSTRDVVVW 256
AQ K ++ + IH + H +H S +C G V + +F+++ D++ +
Sbjct: 22 AQCKKLRELQRIHALAIAHGLHPHQQSVSCKIFRCYADFGRVADARKLFDEIPNPDLISF 81
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LP 305
S++S ++ +A+ L V+ A +P+ +V L A
Sbjct: 82 TSLMSLHLQLDNQREAISLFARVVAAGHRPDGFAVVGALSASSGAGDQVVGRAVHGLIFR 141
Query: 306 QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
GL V NALIDMY +CG + + K+F M K+ V+W M+ Y
Sbjct: 142 LGLDGEVVVGNALIDMYSQCGKFESAVKVFDRMSLKDEVTWGSMLHGY 189
>gi|302753382|ref|XP_002960115.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
gi|300171054|gb|EFJ37654.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
Length = 653
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 170/345 (49%), Gaps = 28/345 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W+ ++ Y Y+E + ++ M+ + + D + V AC++L D G+ V
Sbjct: 15 SWSILVECYVQNAMYQEALEVYKEMVREEISIDAYTLSSVLAACTKLLDVEEGRMVQRKA 74
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD--QDFLVNNSLIDFYAKCRYLKVS 149
+ FE + V L+ LF KCG +E +F M +D + ++I Y C LK S
Sbjct: 75 EELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTAMIGAY--CGSLKDS 132
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + KD+VSWNAM+A Y L G ++ +L M P+ + S +L ACA
Sbjct: 133 KSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLF--HRMCTLGHTPDIYTFSSILGACA 190
Query: 210 QVKGVKLGKAIH----------GYVLRHH-IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
K ++ G+ +H + ++++ I + T CG + + F + +++ WN+
Sbjct: 191 SPKRLEDGRMLHVRITARGFDRDFAMQNNLISMYTRCGSLESARRYFYSIEKKELGAWNT 250
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------G 307
+++A+ + + DAL L +++++ P+ T SV+ +C L AL + G
Sbjct: 251 MLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCG 310
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+ AL++MY +CG++ ++K F + +K++VSW+ MI+
Sbjct: 311 FEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAA 355
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 154/349 (44%), Gaps = 63/349 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y + G+ ++ +LF+ M G PD + + AC+ K G+ M
Sbjct: 146 SWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGR-----M 200
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ ++ IT+ F D+DF + N+LI Y +C L+ +
Sbjct: 201 LHVR----------------------ITARGF---DRDFAMQNNLISMYTRCGSLESARR 235
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F I++K+L +WN MLA YA F + L M+ P+ + S V+ +CA +
Sbjct: 236 YFYSIEKKELGAWNTMLAAYAQ--FDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASL 293
Query: 212 KGVKLGKAIH--------------GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWN 257
++ GK IH G L +++ CG + + F+ +S +DVV W+
Sbjct: 294 GALREGKFIHECSTSCGFEKDVILGTAL---VNMYAKCGSLADAKKSFDGISNKDVVSWS 350
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK----------LAALPQG 307
++I+A + G +AL+L + + + N VT SVL AC L Q
Sbjct: 351 AMIAASAQHGHAEEALELSHLMNLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQD 410
Query: 308 LGTGSFVWN--ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G N ID+ GR G ++++ + MP K VS+ ++++ G
Sbjct: 411 FGIERDEENTVGFIDLLGRAGWLKEAEHVLHTMPFK--VSFVALVTLLG 457
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 107/254 (42%), Gaps = 54/254 (21%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F +IKQ++ SW+ ++ Y +E + EM++ ++ + +LS VLAAC ++
Sbjct: 5 FDRIKQRNAFSWSILVECYVQNAMYQEALEVYK--EMVREEISIDAYTLSSVLAACTKLL 62
Query: 213 GVKLGKAIH------GY-----VLRHHIHLSTACGFVICSCSVFNQLST----------- 250
V+ G+ + G+ V IHL CG + + SVF +
Sbjct: 63 DVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTAMI 122
Query: 251 -------------------RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI 291
+DVV WN++I+A+ G DA L + P+ T
Sbjct: 123 GAYCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTF 182
Query: 292 VSVLPAC-----------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340
S+L AC L + +G + N LI MY RCG+++ +R+ F +
Sbjct: 183 SSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMYTRCGSLESARRYFYSIEK 242
Query: 341 KNLVSWNVMISVYG 354
K L +WN M++ Y
Sbjct: 243 KELGAWNTMLAAYA 256
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 69/151 (45%), Gaps = 41/151 (27%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
VF+++ R+ W+ ++ +V++ +AL++ ++++ + + T+ SVL AC KL
Sbjct: 4 VFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVREEISIDAYTLSSVLAACTKLLD 63
Query: 304 LPQG---------LG--TGSFVWNALIDMYGR---------------------------- 324
+ +G LG V +LI ++ +
Sbjct: 64 VEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTAMIG 123
Query: 325 --CGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
CG+++ S+ +F+ M K++VSWN MI+ Y
Sbjct: 124 AYCGSLKDSKSLFLTMDVKDVVSWNAMIAAY 154
>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 650
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 162/330 (49%), Gaps = 61/330 (18%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y+ + + E V+++ LM+ ++PD F P K + + GK++ ++ +
Sbjct: 75 WNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHGKELLNHAV 134
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F+ N V++ + +F CG +++ +F D C
Sbjct: 135 KHGFDSNLFVQKAFIHMFSLCGIVDLAHKVF--------------DMGDAC--------- 171
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
++V+WN ML+GY N + + ++ + + VL+AC+++K
Sbjct: 172 -------EVVTWNIMLSGY----------NRVKQFKISKMLL---------VLSACSKLK 205
Query: 213 GVKLGKAIHGYVLRHHI-HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
++ GK I Y+ + H+ ACG + + VF+ + TRDVV W ++I ++R +
Sbjct: 206 DLEWGKHIFKYINGGIVEHMFAACGEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIG 265
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL-----------GTGSFVWNALID 320
AL L R++ ++NVKP+ T+VS+L AC L AL G SFV NAL+D
Sbjct: 266 ALALFREMQMSNVKPDEFTMVSILIACALLGALELGEWVKTCIDKNSNKNDSFVGNALVD 325
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
MY +CG ++K++K+F M K+ +W MI
Sbjct: 326 MYFKCGNVRKAKKVFKEMYQKDKFTWTTMI 355
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 103/242 (42%), Gaps = 33/242 (13%)
Query: 126 MDQDFLVNNSLIDF--YAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNL 183
+ D L N +I F + + +H F I + WN M+ GY+ E ++
Sbjct: 35 LSSDPLFRNRVIAFCCAHESGNMNYAHQVFDTIPHPSMFIWNTMIKGYSKISHPENGVSM 94
Query: 184 LDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH-----------HIHLS 232
+ M+ ++++P+ + L + ++ GK + + ++H IH+
Sbjct: 95 Y--LLMLTSNIKPDRFTFPFSLKGFTRDMALQHGKELLNHAVKHGFDSNLFVQKAFIHMF 152
Query: 233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
+ CG V + VF+ +VV WN ++S + R Q + LL
Sbjct: 153 SLCGIVDLAHKVFDMGDACEVVTWNIMLSGYNRVKQFKISKMLL---------------- 196
Query: 293 SVLPACLKLAALPQGLGTGSFVWNALID-MYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
VL AC KL L G ++ +++ M+ CG + +++ +F M +++VSW MI
Sbjct: 197 -VLSACSKLKDLEWGKHIFKYINGGIVEHMFAACGEMDEAQGVFDNMKTRDVVSWTAMID 255
Query: 352 VY 353
Y
Sbjct: 256 GY 257
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 32/182 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ Y + ++ + LF M V+PD F + AC+ L +G+ V
Sbjct: 249 SWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELGEWV---- 304
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
C+ + D V N+L+D Y KC ++ +
Sbjct: 305 -------KTCIDK-------------------NSNKNDSFVGNALVDMYFKCGNVRKAKK 338
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ QKD +W M+ G A+ G EE + MI+ + P+ I+ GVL AC
Sbjct: 339 VFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFS--NMIEASVTPDEITYIGVLCACMVD 396
Query: 212 KG 213
KG
Sbjct: 397 KG 398
>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
Length = 534
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 94/383 (24%), Positives = 185/383 (48%), Gaps = 50/383 (13%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCN----------------------WTSMMGMYNVL 43
+++A +I+ G+ +F+ +++++ FC+ + S++ Y
Sbjct: 28 KINASIIIHGLSQSSFMVTKMVD-FCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHN 86
Query: 44 GYYEEIVNLFYLMIDKGVR-PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
Y +++ ++ ++ K PD F P ++K+C+ L +GK V+ ++ +
Sbjct: 87 SLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVT 146
Query: 103 KRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ L+D+++K + +F+EM ++D + NSL+ YA+ +K + F + K +
Sbjct: 147 ENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTI 206
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSW AM++GY G E + EM++ ++P+ ISL VL +CAQ+ ++LGK IH
Sbjct: 207 VSWTAMISGYTGIGCYVEAMDFFREMQL--AGIEPDEISLISVLPSCAQLGSLELGKWIH 264
Query: 222 GYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y R I + + CG + + +F Q+ +DV+ W+++IS + G
Sbjct: 265 LYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAH 324
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNAL 318
A++ ++ A VKPN +T + +L AC + +GL + + L
Sbjct: 325 GAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCL 384
Query: 319 IDMYGRCGAIQKSRKIFVLMPHK 341
ID+ R G ++++ +I MP K
Sbjct: 385 IDVLARAGKLERAVEITKTMPMK 407
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 132/282 (46%), Gaps = 54/282 (19%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
+ Q + ++DF K + + F+++ ++ +N+++ Y +V +
Sbjct: 38 LSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYK 97
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH--HIHLSTACGFV----- 238
++ ++ P+ + + +CA + LGK +HG++ + H+ T +
Sbjct: 98 QLLRKSFEL-PDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMK 156
Query: 239 ----ICSCSVFNQLSTRDVVVWNSIISAFVRSGQV------------------------- 269
+ + VF+++ RDV+ WNS++S + R GQ+
Sbjct: 157 FDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGY 216
Query: 270 ------VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGS 312
V+A+D R++ +A ++P+ ++++SVLP+C +L +L +G +
Sbjct: 217 TGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQT 276
Query: 313 FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V NALI+MY +CG I ++ ++F M K+++SW+ MIS Y
Sbjct: 277 GVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYA 318
>gi|302807608|ref|XP_002985498.1| hypothetical protein SELMODRAFT_122489 [Selaginella moellendorffii]
gi|300146704|gb|EFJ13372.1| hypothetical protein SELMODRAFT_122489 [Selaginella moellendorffii]
Length = 589
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 155/343 (45%), Gaps = 50/343 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+WT M Y G+ E + L M +D RPD FV +AC+ L+D + ++D
Sbjct: 25 SWTLMTAAYIQNGHMELALRLLQEMDLDGSSRPDSFVFANSVRACAALQDLATARALHDR 84
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ + +GL D L+ NSL++ Y+KC L +
Sbjct: 85 IFA--------------------------TGLLH---SDTLLQNSLVNLYSKCGSLADAI 115
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F +I KDLVSWN+ML + G + L ME+ + + I+L ++ ACA
Sbjct: 116 RVFDEISNKDLVSWNSMLRAHVENGEPLKALKLHQRMELEGVWNEADDITLLCLVQACAD 175
Query: 211 VKGVKLGKAIHGYVLRHH----------IHLSTACGFVICSCSVFNQL--STRDVVVWNS 258
+ + + + + + R + + CG + + VF L S++ VV W
Sbjct: 176 LGSLTVARELDTRITRSRAMAAKMANGLVSMYAKCGSLEDAEDVFEDLPSSSKSVVAWTC 235
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC--------LKLAALPQGLGT 310
+I + ++G+ DAL R + + VKP+TV V+VL C + + GL
Sbjct: 236 LIDGYAQAGRGKDALRAYRRMELEGVKPDTVAFVAVLGGCDLSSDIRKIHSSVQEAGLEM 295
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V AL + YGRC + +RKIF MP KN+V+WN M++ Y
Sbjct: 296 TIGVATALTNAYGRCHEVDAARKIFDAMPEKNVVTWNSMVAAY 338
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 130/288 (45%), Gaps = 48/288 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT ++ Y G ++ + + M +GV+PD V C + D+
Sbjct: 233 WTCLIDGYAQAGRGKDALRAYRRMELEGVKPDTVAFVAVLGGCD------LSSDIRKIHS 286
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
S++ G +E+T G V +L + Y +C + +
Sbjct: 287 SVQEAG-----------------LEMTIG----------VATALTNAYGRCHEVDAARKI 319
Query: 153 FSKIKQKDLVSWNAMLAGYALGG-FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +K++V+WN+M+A Y+ G F E NL +M ++ + P+ + VL AC+ +
Sbjct: 320 FDAMPEKNVVTWNSMVAAYSQHGLFAGEALNLHWQMNVL--GVVPDEFTYLSVLGACSSL 377
Query: 212 KGVKLGKAIHGYVLRHHI--HLSTACGFVI----CSC-----SVFNQL-STRDVVVWNSI 259
+ V+ G+ H +L + ++S AC V C C ++F+ + STRDVV W S+
Sbjct: 378 RNVEQGRETHARILERSLETNMSLACALVTMYGECGCLESAKAIFDGMASTRDVVAWTSM 437
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
I A R ++L R++ +A V PN V++ +L AC L + +
Sbjct: 438 IGASSRCKDGRRTVELFREMSLAGVNPNEVSLTCLLNACSHLGMMDEA 485
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 121/242 (50%), Gaps = 27/242 (11%)
Query: 139 FYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT 198
Y +C + + F +I +++ SW M A Y G E LL EM++ + +P++
Sbjct: 1 MYGRCGSIIDARAVFQEIWTRNVFSWTLMTAAYIQNGHMELALRLLQEMDLDGSS-RPDS 59
Query: 199 ISLSGVLAACAQVKGVKLGKAIHGYV----LRHH--------IHLSTACGFVICSCSVFN 246
+ + ACA ++ + +A+H + L H ++L + CG + + VF+
Sbjct: 60 FVFANSVRACAALQDLATARALHDRIFATGLLHSDTLLQNSLVNLYSKCGSLADAIRVFD 119
Query: 247 QLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV--KPNTVTIVSVLPACLKLAAL 304
++S +D+V WNS++ A V +G+ + AL L + + + V + + +T++ ++ AC L +L
Sbjct: 120 EISNKDLVSWNSMLRAHVENGEPLKALKLHQRMELEGVWNEADDITLLCLVQACADLGSL 179
Query: 305 ----------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP--HKNLVSWNVMISV 352
+ + + N L+ MY +CG+++ + +F +P K++V+W +I
Sbjct: 180 TVARELDTRITRSRAMAAKMANGLVSMYAKCGSLEDAEDVFEDLPSSSKSVVAWTCLIDG 239
Query: 353 YG 354
Y
Sbjct: 240 YA 241
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 117/240 (48%), Gaps = 25/240 (10%)
Query: 134 NSLIDFYAKCRYLKVSHCKFSKI--KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
N L+ YAKC L+ + F + K +V+W ++ GYA G ++ ME+
Sbjct: 201 NGLVSMYAKCGSLEDAEDVFEDLPSSSKSVVAWTCLIDGYAQAGRGKDALRAYRRMEL-- 258
Query: 192 TDMQPNTISLSGVLAACAQVKGV-KLGKAIHGYVLRHHIHLSTA-------CGFVICSCS 243
++P+T++ VL C + K+ ++ L I ++TA C V +
Sbjct: 259 EGVKPDTVAFVAVLGGCDLSSDIRKIHSSVQEAGLEMTIGVATALTNAYGRCHEVDAARK 318
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVV-DALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
+F+ + ++VV WNS+++A+ + G +AL+L + V V P+ T +SVL AC L
Sbjct: 319 IFDAMPEKNVVTWNSMVAAYSQHGLFAGEALNLHWQMNVLGVVPDEFTYLSVLGACSSLR 378
Query: 303 ALPQGLGTGSFVWN-----------ALIDMYGRCGAIQKSRKIFVLMPH-KNLVSWNVMI 350
+ QG T + + AL+ MYG CG ++ ++ IF M +++V+W MI
Sbjct: 379 NVEQGRETHARILERSLETNMSLACALVTMYGECGCLESAKAIFDGMASTRDVVAWTSMI 438
>gi|225466051|ref|XP_002263650.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
chloroplastic [Vitis vinifera]
gi|296084180|emb|CBI24568.3| unnamed protein product [Vitis vinifera]
Length = 516
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/325 (29%), Positives = 157/325 (48%), Gaps = 61/325 (18%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ Y LG YE+ + L++ M ++GV PD F P+V KAC + VG++V+ +++
Sbjct: 150 WNSLISGYAELGLYEDAMALYFQMEEEGVVPDRFTFPRVLKACGGIGSISVGEEVHRHVV 209
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+CG D V N+L+D YAKC + +
Sbjct: 210 -------------------RCG-----------FADDGFVLNALVDMYAKCGDIVKARKV 239
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F KI +D VSWN+ML GY G + ++ M+Q +P+ +++S V+ V
Sbjct: 240 FDKIVCRDSVSWNSMLTGYIRHGLPLQALSIF--RRMLQYGFEPDAVAISTVVTG---VP 294
Query: 213 GVKLGKAIHGYVLRHHIH--LSTACGFVIC---------SCSVFNQLSTRDVVVWNSIIS 261
+KL IHG+VLR + LS A ++ +C +F+ + RDVV WNSIIS
Sbjct: 295 SLKLAGQIHGWVLRRGVQWNLSIANSLIVLYSNHGKLDQACWLFDHMPERDVVSWNSIIS 354
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------- 314
A + + A+ + A+V P+ VT VS+L AC L + G G S +
Sbjct: 355 AHRKD---LKAITYFSRMQKADVLPDVVTFVSLLSACAHLGLVKDGEGLFSMMREDYGMI 411
Query: 315 -----WNALIDMYGRCGAIQKSRKI 334
+ ++++YGR G I+++ +I
Sbjct: 412 PSMEHYACMVNLYGRAGLIEEAYEI 436
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 146/316 (46%), Gaps = 49/316 (15%)
Query: 57 IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM 116
I G+ D + + + C +L+ + G ++ + + + + LL L+ GR+
Sbjct: 71 IQDGITVDAQIFSSLLETCFQLQAFDHGIRIHRLIPTSLLRKSVALSSKLLRLYASIGRI 130
Query: 117 EITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGF 176
E LF++M + + + +WN++++GYA G
Sbjct: 131 EEAHRLFDQMSR----------------------------RNRSAFAWNSLISGYAELGL 162
Query: 177 REEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH-----------GYVL 225
E+ L +ME + + P+ + VL AC + + +G+ +H G+VL
Sbjct: 163 YEDAMALYFQME--EEGVVPDRFTFPRVLKACGGIGSISVGEEVHRHVVRCGFADDGFVL 220
Query: 226 RHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK 285
+ + CG ++ + VF+++ RD V WNS+++ ++R G + AL + R ++ +
Sbjct: 221 NALVDMYAKCGDIVKARKVFDKIVCRDSVSWNSMLTGYIRHGLPLQALSIFRRMLQYGFE 280
Query: 286 PNTVTIVSVLPA--CLKLAA------LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVL 337
P+ V I +V+ LKLA L +G+ + N+LI +Y G + ++ +F
Sbjct: 281 PDAVAISTVVTGVPSLKLAGQIHGWVLRRGVQWNLSIANSLIVLYSNHGKLDQACWLFDH 340
Query: 338 MPHKNLVSWNVMISVY 353
MP +++VSWN +IS +
Sbjct: 341 MPERDVVSWNSIISAH 356
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/241 (18%), Positives = 98/241 (40%), Gaps = 59/241 (24%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ +G +VH H++ CG F+ + L++++ +W SM+
Sbjct: 198 ISVGEEVHRHVVRCGFADDGFVLNALVDMYAKCGDIVKARKVFDKIVCRDSVSWNSMLTG 257
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G + +++F M+ G PD V LK + ++ +++ + N
Sbjct: 258 YIRHGLPLQALSIFRRMLQYGFEPDAVAISTVVTGVPSLK---LAGQIHGWVLRRGVQWN 314
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ L+ L+ G+++ LF+ M ++
Sbjct: 315 LSIANSLIVLYSNHGKLDQACWLFDHM------------------------------PER 344
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSWN++++ + R+++ + M + D+ P+ ++ +L+ACA + VK G+
Sbjct: 345 DVVSWNSIISAH-----RKDLKAITYFSRMQKADVLPDVVTFVSLLSACAHLGLVKDGEG 399
Query: 220 I 220
+
Sbjct: 400 L 400
>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
Length = 1408
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 108/420 (25%), Positives = 192/420 (45%), Gaps = 74/420 (17%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN-WT--------SMMGMYNVLGYYEEIV-NL 52
LG+++H LI G +L +L L+ + W M L + E I+ NL
Sbjct: 692 LGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNL 751
Query: 53 FYLMIDKGV-----------RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+ KGV + + +V +AC ++ K ++ Y+ + +
Sbjct: 752 QSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVS 811
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKIK--- 157
+ PL+ ++ K G++E+ +F+ M+ + NS+I YA +L + F +++
Sbjct: 812 LCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSD 871
Query: 158 -QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKL 216
+ D+V+WN +L+G+ L G++EEV N+L M+ +PN+ S++ VL A +++ + +
Sbjct: 872 MKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQ--GEGFKPNSSSMTSVLQAISELGFLNM 929
Query: 217 GKAIHGYVLRHHIHLSTACGFVI-----------CSCSVFNQLSTRDVVVWNSIISAFVR 265
GK HGYVLR+ G + + +VF+ + R++ WNS++S +
Sbjct: 930 GKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSF 989
Query: 266 SGQVVDALDLLRDVIVANVK------------------------PNTVTIVSVLPACLKL 301
G DAL LL + +K PN+ +I +L AC L
Sbjct: 990 KGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAFMPNSASITCLLRACASL 1049
Query: 302 AALPQG-------LGTG----SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ L +G + G FV ALIDMY + +++ + K+F + +K L SWN MI
Sbjct: 1050 SLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMI 1109
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/358 (22%), Positives = 151/358 (42%), Gaps = 83/358 (23%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W ++ + + GY EE++N+ M +G +P+ V +A SEL +GK+ + Y++
Sbjct: 879 WNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVL 938
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F D D V SLID Y K L +
Sbjct: 939 RNGF------------------------------DCDVYVGTSLIDMYVKNHSLXSAQAV 968
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM--IQTDM---------------- 194
F +K +++ +WN++++GY+ G E+ LL++ME I+ D+
Sbjct: 969 FDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCA 1028
Query: 195 ----QPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVI 239
PN+ S++ +L ACA + ++ GK IH +R+ I + + +
Sbjct: 1029 RKAFMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLK 1088
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ VF ++ + + WN +I F G +A+ + ++ V P+ +T ++L AC
Sbjct: 1089 NAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSAC- 1147
Query: 300 KLAALPQGLGTGSFVWNALI----------------DMYGRCGAIQKSRKIFVLMPHK 341
K + L +G G ++++I D+ GR G + ++ + MP K
Sbjct: 1148 KNSGL---IGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLK 1202
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/383 (20%), Positives = 156/383 (40%), Gaps = 90/383 (23%)
Query: 30 FCNWTSMMGMY-NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY 88
+ W S + + + G ++ +F + KGV D V K C+ + D +G +++
Sbjct: 638 YLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIH 697
Query: 89 DYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKV 148
+I F+ LD++++C +L++FY +C L+
Sbjct: 698 GCLIKRGFD---------LDVYLRC---------------------ALMNFYGRCWGLEK 727
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
++ F ++ + + WN + ++ L +M+ + ++ T ++ VL AC
Sbjct: 728 ANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQF--SFLKAETATIVRVLQAC 785
Query: 209 AQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWN 257
++ + K IHGYV R I + + G + + VF+ + R+ WN
Sbjct: 786 GKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWN 845
Query: 258 SIISAFVRSGQVVDAL---------DLLRDVIVAN------------------------- 283
S+IS++ G + DA D+ D++ N
Sbjct: 846 SMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGE 905
Query: 284 -VKPNTVTIVSVLPACLKLAALPQGLGTGSFVW-----------NALIDMYGRCGAIQKS 331
KPN+ ++ SVL A +L L G T +V +LIDMY + ++ +
Sbjct: 906 GFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSA 965
Query: 332 RKIFVLMPHKNLVSWNVMISVYG 354
+ +F M ++N+ +WN ++S Y
Sbjct: 966 QAVFDNMKNRNIFAWNSLVSGYS 988
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 103/229 (44%), Gaps = 29/229 (12%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+ +G + H +++ G + ++G+ L++++ W S++
Sbjct: 927 LNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSG 986
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y+ G +E+ + L M +G++PD + + R K SI
Sbjct: 987 YSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCAR--KAFMPNSASITCLLR 1044
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
AC LL + + I +G E D V +LID Y+K LK +H F +I+ K
Sbjct: 1045 ACASLSLLQKGKEIHCLSIRNGFIE----DVFVATALIDMYSKSSSLKNAHKVFRRIQNK 1100
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
L SWN M+ G+A+ G +E ++ +EM+ + + P+ I+ + +L+AC
Sbjct: 1101 TLASWNCMIMGFAIFGLGKEAISVFNEMQKV--GVGPDAITFTALLSAC 1147
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/395 (23%), Positives = 179/395 (45%), Gaps = 48/395 (12%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G ++H H + G E F+ + L+ ++ +W +++ Y+
Sbjct: 135 GRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQ 194
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
Y+E++ LF M ++ D K+ ACS L D+ + Y+ E + +
Sbjct: 195 YNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYL 254
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
L+D++ + E+ G+F+ M + +V+ N+L+ +AK L + F + ++D+
Sbjct: 255 GNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDV 314
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
+SW +M+ GY+ + L EM + ++P+ ++++ VL+ACA + + +G A+H
Sbjct: 315 ISWTSMITGYSQASQFSDAVKLFQEM--MAAKVKPDKVTVASVLSACAHLGKLDVGWAVH 372
Query: 222 GYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y+ RH + CG V + VF+++ +D V W S+IS +G
Sbjct: 373 HYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFAN 432
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNAL 318
ALDL ++ V+P T V +L AC + +GL + + +
Sbjct: 433 SALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCV 492
Query: 319 IDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+D+ R G I K+ + MP ++V W +++S
Sbjct: 493 VDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSA 527
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/421 (21%), Positives = 176/421 (41%), Gaps = 107/421 (25%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFC----------------------NWTSMMGMYNVL 43
++HAHLI + FL S ++ + W M+ +
Sbjct: 35 ELHAHLIRTQLHTDPFLMSDVIRSYSLSSTNLHKAHLVFNQIECPTLVVWNHMIRGLSQS 94
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
+ E ++++ M +G+ ++ ++KAC+ + D G+ ++ + + + FE
Sbjct: 95 DHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFE------ 148
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
S LF V+N+LI YA C L + F + +DLVS
Sbjct: 149 ----------------SYLF--------VSNALIHMYAMCGQLGFAQKMFDGMLDRDLVS 184
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
WN ++ GY+ +EV L D M +++ + +++ ++ AC+ + + ++ Y
Sbjct: 185 WNTLICGYSQYNKYKEVLRLFDAM--TAANIKADAVTMVKIILACSHLGDWEFADSMVKY 242
Query: 224 VLRHHIHLS------------------------------------------TACGFVICS 241
+ +++ + G + +
Sbjct: 243 IKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAA 302
Query: 242 CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
+F+ + RDV+ W S+I+ + ++ Q DA+ L ++++ A VKP+ VT+ SVL AC L
Sbjct: 303 RKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHL 362
Query: 302 AALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
L G+ +V N+LIDMY +CG ++K+ ++F M K+ VSW +I
Sbjct: 363 GKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVI 422
Query: 351 S 351
S
Sbjct: 423 S 423
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 112/252 (44%), Gaps = 45/252 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ Y+ + + V LF M+ V+PD V AC+ L VG V+ Y
Sbjct: 316 SWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHY- 374
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I+ G + D V NSLID Y KC ++ +
Sbjct: 375 --IRRHG---------------------------VQADIYVGNSLIDMYCKCGMVEKALE 405
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++K KD VSW ++++G A+ GF +L +M++ +QP + G+L ACA
Sbjct: 406 VFHRMKDKDSVSWTSVISGLAVNGFANSALDLFS--QMLREGVQPTHGTFVGILLACAHA 463
Query: 212 KGVKLG-------KAIHGYV--LRHH---IHLSTACGFVICSCSVFNQLS-TRDVVVWNS 258
V G +++HG V ++H+ + L + G + + ++ DVVVW
Sbjct: 464 GLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRI 523
Query: 259 IISAFVRSGQVV 270
++SA G VV
Sbjct: 524 LLSACKLHGNVV 535
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 117/277 (42%), Gaps = 55/277 (19%)
Query: 130 FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
FL+++ + + L +H F++I+ LV WN M+ G + E ++ M
Sbjct: 50 FLMSDVIRSYSLSSTNLHKAHLVFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRMH- 108
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-----------HHIHLSTACGFV 238
+ N ++L + ACA+V + G+ IH + L+ IH+ CG +
Sbjct: 109 -HQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQL 167
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ +F+ + RD+V WN++I + + + + L L + AN+K + VT+V ++ AC
Sbjct: 168 GFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILAC 227
Query: 299 LKLAALP-----------QGLGTGSFVWNALIDMYGR----------------------- 324
L L ++ N LIDMYGR
Sbjct: 228 SHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWN 287
Query: 325 --------CGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G + +RK+F MP ++++SW MI+ Y
Sbjct: 288 ALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGY 324
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 23/159 (14%)
Query: 218 KAIHGYVLRHHIHLST-ACGFVICSCS-----------VFNQLSTRDVVVWNSIISAFVR 265
K +H +++R +H VI S S VFNQ+ +VVWN +I +
Sbjct: 34 KELHAHLIRTQLHTDPFLMSDVIRSYSLSSTNLHKAHLVFNQIECPTLVVWNHMIRGLSQ 93
Query: 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFV 314
S V+A+ + + + N +T++ + AC +++ AL G + FV
Sbjct: 94 SDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFV 153
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
NALI MY CG + ++K+F M ++LVSWN +I Y
Sbjct: 154 SNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGY 192
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 53/115 (46%), Gaps = 21/115 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+++G VH ++ GV+ ++G+ L++++C +WTS++
Sbjct: 365 LDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISG 424
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI 94
V G+ ++LF M+ +GV+P H + AC+ G + ++ M S+
Sbjct: 425 LAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESV 479
>gi|218191884|gb|EEC74311.1| hypothetical protein OsI_09581 [Oryza sativa Indica Group]
Length = 1112
Score = 139 bits (351), Expect = 2e-30, Method: Composition-based stats.
Identities = 100/347 (28%), Positives = 165/347 (47%), Gaps = 59/347 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+WTSM+G GY ++ + LF M+ D ++PD V V +AC+ L+D R G V+
Sbjct: 196 SWTSMIGACLGSGYADQALRLFREMLADGALQPDGVVVVVVLRACAMLEDVRAGASVHAV 255
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+G D V+NSL+D YAKC L+ +
Sbjct: 256 ATRRGLQG------------------------------DLFVDNSLVDMYAKCLDLRSAR 285
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F I K++VSWN ML+G G E +LL +Q + + +L+ +L C +
Sbjct: 286 KVFDLIAVKNVVSWNTMLSGLVHAGSYPEALHLL----ALQIGVVGDETTLAVLLQLCKK 341
Query: 211 VK-GVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNS 258
+ G + +++HG +R + LS A CG V +F + R+V+ W++
Sbjct: 342 KRLGGQAARSVHGAAIRRRL-LSMALLNALLDAYGKCGLVEDVLRLFQGMRERNVITWST 400
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQG 307
+I+A +G+ A+ ++ +PN++T++S++ AC A A+ G
Sbjct: 401 VIAACAHNGRPHAAMACFVAMLETGERPNSITVLSLVEACGSCAEMWASRRAHGVAVRSG 460
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
LG V NAL+ MYG+CG + S ++F MP K++++WN MI G
Sbjct: 461 LGFELAVGNALVHMYGKCGELGASARVFDTMPVKDVLTWNSMIGALG 507
Score = 89.4 bits (220), Expect = 3e-15, Method: Composition-based stats.
Identities = 61/243 (25%), Positives = 118/243 (48%), Gaps = 27/243 (11%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V NSL+ YA + F ++ +D+ SW +M+ G+ ++ L EM +
Sbjct: 165 VANSLLSLYATLGDFASAAILFGEMPDRDVASWTSMIGACLGSGYADQALRLFREM-LAD 223
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVIC 240
+QP+ + + VL ACA ++ V+ G ++H R + + C +
Sbjct: 224 GALQPDGVVVVVVLRACAMLEDVRAGASVHAVATRRGLQGDLFVDNSLVDMYAKCLDLRS 283
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ VF+ ++ ++VV WN+++S V +G +AL LL + V + T+ +L C K
Sbjct: 284 ARKVFDLIAVKNVVSWNTMLSGLVHAGSYPEALHLL--ALQIGVVGDETTLAVLLQLCKK 341
Query: 301 L------------AALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
AA+ + L + + + NAL+D YG+CG ++ ++F M +N+++W+
Sbjct: 342 KRLGGQAARSVHGAAIRRRLLSMALL-NALLDAYGKCGLVEDVLRLFQGMRERNVITWST 400
Query: 349 MIS 351
+I+
Sbjct: 401 VIA 403
Score = 82.8 bits (203), Expect = 2e-13, Method: Composition-based stats.
Identities = 50/189 (26%), Positives = 95/189 (50%), Gaps = 15/189 (7%)
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
N+L+D Y KC ++ F ++++++++W+ ++A A G + M++T
Sbjct: 368 NALLDAYGKCGLVEDVLRLFQGMRERNVITWSTVIAACAHNGRPHAAMACF--VAMLETG 425
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSC 242
+PN+I++ ++ AC + + HG +R +H+ CG + S
Sbjct: 426 ERPNSITVLSLVEACGSCAEMWASRRAHGVAVRSGLGFELAVGNALVHMYGKCGELGASA 485
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA--NVKPNTVTIVSVLPACLK 300
VF+ + +DV+ WNS+I A +G+ DAL LL + V+PN VT+++ L AC
Sbjct: 486 RVFDTMPVKDVLTWNSMIGALGMNGRARDALALLHRMEAEGDEVRPNGVTMLAALWACAH 545
Query: 301 LAALPQGLG 309
+ +G+G
Sbjct: 546 GGLVEEGIG 554
Score = 75.1 bits (183), Expect = 4e-11, Method: Composition-based stats.
Identities = 51/150 (34%), Positives = 78/150 (52%), Gaps = 12/150 (8%)
Query: 214 VKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
+K +IH V + L G + +F ++ RDV W S+I A + SG AL
Sbjct: 155 LKTPASIHTPVANSLLSLYATLGDFASAAILFGEMPDRDVASWTSMIGACLGSGYADQAL 214
Query: 274 DLLRDVIV-ANVKPNTVTIVSVLPACLKL-----------AALPQGLGTGSFVWNALIDM 321
L R+++ ++P+ V +V VL AC L A +GL FV N+L+DM
Sbjct: 215 RLFREMLADGALQPDGVVVVVVLRACAMLEDVRAGASVHAVATRRGLQGDLFVDNSLVDM 274
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
Y +C ++ +RK+F L+ KN+VSWN M+S
Sbjct: 275 YAKCLDLRSARKVFDLIAVKNVVSWNTMLS 304
Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats.
Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 17/185 (9%)
Query: 35 SMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI 94
+++ Y G E+++ LF M ++ V V AC+ + M+
Sbjct: 369 ALLDAYGKCGLVEDVLRLFQGMRERNV----ITWSTVIAACAHNGRPHAAMACFVAMLET 424
Query: 95 KFEGNACVKRPLLDLFIKCGRM---------EITSGLFEEMDQDFLVNNSLIDFYAKCRY 145
N+ L++ C M + SGL E+ V N+L+ Y KC
Sbjct: 425 GERPNSITVLSLVEACGSCAEMWASRRAHGVAVRSGLGFEL----AVGNALVHMYGKCGE 480
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
L S F + KD+++WN+M+ + G + LL ME +++PN +++ L
Sbjct: 481 LGASARVFDTMPVKDVLTWNSMIGALGMNGRARDALALLHRMEAEGDEVRPNGVTMLAAL 540
Query: 206 AACAQ 210
ACA
Sbjct: 541 WACAH 545
>gi|302766239|ref|XP_002966540.1| hypothetical protein SELMODRAFT_61257 [Selaginella moellendorffii]
gi|300165960|gb|EFJ32567.1| hypothetical protein SELMODRAFT_61257 [Selaginella moellendorffii]
Length = 630
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/351 (27%), Positives = 159/351 (45%), Gaps = 69/351 (19%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W+ ++ Y G+ E +NLF M V P+ V ACS KD +G ++ +
Sbjct: 70 SWSCIIAAYGQAGHCREAINLFQRM---DVEPNEMVIVSTLAACSGAKDLALGMAIHARI 126
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+S ++ + V +L++ YAKC ++ +
Sbjct: 127 LS------------------------------PDLRKSVFVGTALLNMYAKCGAIEQARA 156
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME-MIQTDMQPNTISLSGVLAACAQ 210
F +I KD+VSW AM+ +A G + L+ +E MIQ +QPN ++ + AC+
Sbjct: 157 VFDQIPHKDVVSWTAMITAFAQMG---DCRQALETLEGMIQARVQPNPVTFVAAITACSS 213
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVICS-----------CSVFNQLSTRDVVVWNSI 259
+ + G+ IH V+ +H + S SVF ++ R+ V WNS+
Sbjct: 214 REFLDRGRKIHAAVIDLGLHGDITIQNALVSMYAKGSSAEEALSVFQRMEDRNRVSWNSM 273
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC---------------LKLAAL 304
I+AF S Q A+ L + + +KP+ V+ + VL AC L+LAA+
Sbjct: 274 IAAFAASAQSCAAMGLFHGMNLEGIKPDDVSFLGVLSACSSTRCLRSCKRIHSQLELAAV 333
Query: 305 --PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
P L V N+L+ Y +CG ++ + +IF +P KN+VSW M++ Y
Sbjct: 334 HSPPDLS----VENSLVTAYAKCGDLEAAERIFQRIPGKNVVSWTAMLTAY 380
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 126/248 (50%), Gaps = 30/248 (12%)
Query: 132 VNNSLIDFYAKC---RYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
+ N LI Y KC L + F ++ +KD+VSW+ ++A Y G E NL M
Sbjct: 36 LGNLLIQMYRKCGGTSSLADARAVFDQMPKKDVVSWSCIIAAYGQAGHCREAINLFQRM- 94
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL----RHHIHLSTA-------CGF 237
D++PN + + LAAC+ K + LG AIH +L R + + TA CG
Sbjct: 95 ----DVEPNEMVIVSTLAACSGAKDLALGMAIHARILSPDLRKSVFVGTALLNMYAKCGA 150
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ + +VF+Q+ +DVV W ++I+AF + G AL+ L +I A V+PN VT V+ + A
Sbjct: 151 IEQARAVFDQIPHKDVVSWTAMITAFAQMGDCRQALETLEGMIQARVQPNPVTFVAAITA 210
Query: 298 C-----------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
C + A + GL + NAL+ MY + + +++ +F M +N VSW
Sbjct: 211 CSSREFLDRGRKIHAAVIDLGLHGDITIQNALVSMYAKGSSAEEALSVFQRMEDRNRVSW 270
Query: 347 NVMISVYG 354
N MI+ +
Sbjct: 271 NSMIAAFA 278
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/348 (25%), Positives = 149/348 (42%), Gaps = 59/348 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ + + LF+ M +G++PD V ACS + R K ++ +
Sbjct: 269 SWNSMIAAFAASAQSCAAMGLFHGMNLEGIKPDDVSFLGVLSACSSTRCLRSCKRIHSQL 328
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
A V P D V NSL+ YAKC L+ +
Sbjct: 329 ------ELAAVHSP----------------------PDLSVENSLVTAYAKCGDLEAAER 360
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I K++VSW AML Y G + L D +M+ +QP+++ L V+ A + V
Sbjct: 361 IFQRIPGKNVVSWTAMLTAYTFHGNGSKALELYD--KMVGQSIQPDSVVLLNVIYAGSLV 418
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFN-----QLSTRDVVV 255
V L + +H V I++ T CG + + VF+ L RD V
Sbjct: 419 GDVGLARKLHARVASSSFMLKIQIQNALINMYTRCGSLEEARRVFDGIERKNLVARDTVT 478
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------- 307
W+S+++ + G A+ L RD+ + V+P++VT VS+L +C L Q
Sbjct: 479 WSSLVAGYAHHGHAEYAILLYRDMHLEGVQPDSVTYVSILNSCSHAGLLAQARHFFVSMV 538
Query: 308 ----LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
L W ++D+ GR G + ++ + MP ++V+WN ++
Sbjct: 539 EDHCLAAWPDHWKCMVDVLGRAGFVGRAEDVVRNMPFQPDVVAWNTLL 586
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/404 (21%), Positives = 180/404 (44%), Gaps = 82/404 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ LG+ +HA ++ + F+G+ LL ++ +WT+M+
Sbjct: 116 LALGMAIHARILSPDLRKSVFVGTALLNMYAKCGAIEQARAVFDQIPHKDVVSWTAMITA 175
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ +G + + MI V+P+ ACS + G+ ++ +I + G+
Sbjct: 176 FAQMGDCRQALETLEGMIQARVQPNPVTFVAAITACSSREFLDRGRKIHAAVIDLGLHGD 235
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
++ L+ ++ K E +F+ M+ +
Sbjct: 236 ITIQNALVSMYAKGSSAEEALSVFQRME------------------------------DR 265
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+ VSWN+M+A +A L M + ++P+ +S GVL+AC+ + ++ K
Sbjct: 266 NRVSWNSMIAAFAASAQSCAAMGLFHGMNL--EGIKPDDVSFLGVLSACSSTRCLRSCKR 323
Query: 220 IHGYVLRHHIH----------LSTA---CGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
IH + +H L TA CG + + +F ++ ++VV W ++++A+
Sbjct: 324 IHSQLELAAVHSPPDLSVENSLVTAYAKCGDLEAAERIFQRIPGKNVVSWTAMLTAYTFH 383
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----LKLA-ALPQGLGTGSF-----VW 315
G AL+L ++ +++P++V +++V+ A + LA L + + SF +
Sbjct: 384 GNGSKALELYDKMVGQSIQPDSVVLLNVIYAGSLVGDVGLARKLHARVASSSFMLKIQIQ 443
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNL-----VSWNVMISVYG 354
NALI+MY RCG+++++R++F + KNL V+W+ +++ Y
Sbjct: 444 NALINMYTRCGSLEEARRVFDGIERKNLVARDTVTWSSLVAGYA 487
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 8/55 (14%)
Query: 308 LGTGSFV-----WNALIDMYGRCG---AIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L TG F+ N LI MY +CG ++ +R +F MP K++VSW+ +I+ YG
Sbjct: 25 LATGHFLRSVHLGNLLIQMYRKCGGTSSLADARAVFDQMPKKDVVSWSCIIAAYG 79
>gi|449523019|ref|XP_004168522.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17210-like [Cucumis sativus]
Length = 747
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 163/345 (47%), Gaps = 56/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W+ M+G + +G E+ +F M+ + G+ PD V KAC+ LKD +G V+
Sbjct: 216 SWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTNLKDISLGTMVHGL 275
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+I F ++ D V NSLID Y+KC + +
Sbjct: 276 VI------------------------------FRGLEDDLFVGNSLIDMYSKCFNVHSAF 305
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F +I +K+++SWN ML+ Y L E LL M++ + + ++L+ VL
Sbjct: 306 KAFKEIPEKNIISWNLMLSAYILNESHLEALALLG--TMVREGAEKDEVTLANVLQIAKH 363
Query: 211 VKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+++HG ++R I C V + VF+ ++ +DVV W+++
Sbjct: 364 FLDSLKCRSVHGVIIRKGYESNELLLNSVIDAYAKCNLVELARMVFDGMNKKDVVAWSTM 423
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GL 308
I+ F R+G+ +A+ + + + V PN V+I++++ AC A L Q GL
Sbjct: 424 IAGFARNGKPDEAISVFKQ-MNEEVIPNNVSIMNLMEACAVSAELRQSKWAHGIAVRRGL 482
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ + ++IDMY +CG I+ S + F +P KN+V W+ MIS +
Sbjct: 483 ASEVAIGTSIIDMYSKCGDIEASIRAFNQIPQKNVVCWSAMISAF 527
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 90/385 (23%), Positives = 163/385 (42%), Gaps = 77/385 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ LG VH +I G+E F+G+ L++++ +W M+
Sbjct: 266 ISLGTMVHGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWNLMLSA 325
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y + + E + L M+ +G D V + D + V+ +I +E N
Sbjct: 326 YILNESHLEALALLGTMVREGAEKDEVTLANVLQIAKHFLDSLKCRSVHGVIIRKGYESN 385
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
L+ NS+ID YAKC ++++ F + +K
Sbjct: 386 E------------------------------LLLNSVIDAYAKCNLVELARMVFDGMNKK 415
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+V+W+ M+AG+A G +E ++ +M ++ PN +S+ ++ ACA ++ K
Sbjct: 416 DVVAWSTMIAGFARNGKPDEAISVFKQM---NEEVIPNNVSIMNLMEACAVSAELRQSKW 472
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
HG +R I + + CG + S FNQ+ ++VV W+++ISAF +G
Sbjct: 473 AHGIAVRRGLASEVAIGTSIIDMYSKCGDIEASIRAFNQIPQKNVVCWSAMISAFRINGL 532
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG------------TGSFVWN 316
+AL L + KPN VT +S+L AC + +GL G ++
Sbjct: 533 AHEALMLFEKIKQNGTKPNAVTALSLLSACSHGGLIEEGLSFFTSMVQKHGIEPGLEHYS 592
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHK 341
++DM R G ++ ++ +P +
Sbjct: 593 CIVDMLSRAGKFNEALELIEKLPKE 617
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 100/334 (29%), Positives = 149/334 (44%), Gaps = 57/334 (17%)
Query: 44 GYYEEIVNLFYLMIDKGVR-PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G ++E + L++ + G + D +V P + KACS + +G ++ C+
Sbjct: 26 GNWQEALQLYHEIRISGAQLSDTWVLPSILKACSN-TSFNLGTAMH-----------GCL 73
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
IK G TS + NS IDFY K L + F K KD V
Sbjct: 74 --------IKQGCQSSTS-----------IANSTIDFYMKYGDLDSAQRAFDSTKNKDSV 114
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SWN M+ G G + L ++ QPN SL V+ A ++K G A HG
Sbjct: 115 SWNVMVHGNFSNG--SIMAGLCWFIKGRFAHFQPNISSLLLVIQAFRELKIYSQGFAFHG 172
Query: 223 YVLRHHIH--LSTACGFVICSCSV--------FNQLSTR-DVVVWNSIISAFVRSGQVVD 271
Y+ R LS + V F ++S R DVV W+ +I FV+ G+
Sbjct: 173 YIFRSGFSAILSVQNSLLSLYAEVHMYFAYKLFGEMSVRNDVVSWSVMIGGFVQIGEDEQ 232
Query: 272 ALDLLRDVIV-ANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNALI 319
+ R+++ A + P+ VT+VSVL AC L + +GL FV N+LI
Sbjct: 233 GFLMFRNMVTEAGIPPDGVTVVSVLKACTNLKDISLGTMVHGLVIFRGLEDDLFVGNSLI 292
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
DMY +C + + K F +P KN++SWN+M+S Y
Sbjct: 293 DMYSKCFNVHSAFKAFKEIPEKNIISWNLMLSAY 326
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 266 SGQVVDALDLLRDVIVANVK-PNTVTIVSVLPACLKLA----------ALPQGLGTGSFV 314
SG +AL L ++ ++ + +T + S+L AC + + QG + + +
Sbjct: 25 SGNWQEALQLYHEIRISGAQLSDTWVLPSILKACSNTSFNLGTAMHGCLIKQGCQSSTSI 84
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
N+ ID Y + G + +++ F +K+ VSWNVM+
Sbjct: 85 ANSTIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMV 120
>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
Length = 813
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 96/396 (24%), Positives = 183/396 (46%), Gaps = 66/396 (16%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G +H H I G++ F+ + LL+++ W +M+ Y
Sbjct: 144 GRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAH 203
Query: 43 LG-YYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G Y+ + +L + + +RP+ + ++ G V+ Y I N
Sbjct: 204 HGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNR 263
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
K L D L+ +L+D YAKC L + F + ++
Sbjct: 264 NSKSKLTD--------------------GVLLGTALLDMYAKCGSLLYARRVFDAMPARN 303
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
V+W+A++ G+ L R LL + + Q + S++ L ACA + +++G+ +
Sbjct: 304 EVTWSALIGGFVLCS-RMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQL 362
Query: 221 HGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H + + +H + G + + ++F++++ +D V +++++S +V++G+
Sbjct: 363 HALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRA 422
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNAL 318
+A + + + NV+P+ T+VS++PAC LAAL +GL + + + NAL
Sbjct: 423 EEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNAL 482
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
IDMY +CG I SR++F +MP +++VSWN MI+ YG
Sbjct: 483 IDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYG 518
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 147/337 (43%), Gaps = 63/337 (18%)
Query: 50 VNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDL 109
++L+ M+ V P+++ P KACS L D+ G+ ++
Sbjct: 110 LHLYRRMLRHRVAPNNYTFPFALKACSALADHHCGRAIH--------------------- 148
Query: 110 FIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLA 169
R I +GL D V+ +L+D Y KC L + F+ + +DLV+WNAMLA
Sbjct: 149 -----RHAIHAGL----QADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLA 199
Query: 170 GYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI 229
GYA G L M+M ++PN +L +L AQ + G ++H Y +R +
Sbjct: 200 GYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACL 259
Query: 230 H--------------LSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
H L TA CG ++ + VF+ + R+ V W+++I FV +
Sbjct: 260 HSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSR 319
Query: 269 VVDALDLLRDVIVANV-KPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWN 316
+ A L + ++ + + +I S L AC L L G+ N
Sbjct: 320 MTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGN 379
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+L+ MY + G I ++ +F M K+ VS++ ++S Y
Sbjct: 380 SLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGY 416
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 112/244 (45%), Gaps = 42/244 (17%)
Query: 145 YLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGV 204
+L +H F +I D+ ++N ++ Y+ L M++ + PN +
Sbjct: 72 HLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFA 131
Query: 205 LAACAQVKGVKLGKAIHGYVLRHHIH--------LSTAC--GFVICSC-----SVFNQLS 249
L AC+ + G+AIH RH IH +STA +V C+C +F +
Sbjct: 132 LKACSALADHHCGRAIH----RHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMP 187
Query: 250 TRDVVVWNSIISAFVRSGQVVDALD--LLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
RD+V WN++++ + G A+ L + + ++PN T+V++LP + AL QG
Sbjct: 188 ARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQG 247
Query: 308 ---------------------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
L G + AL+DMY +CG++ +R++F MP +N V+W
Sbjct: 248 TSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTW 307
Query: 347 NVMI 350
+ +I
Sbjct: 308 SALI 311
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 13/134 (9%)
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV--DALDLLRDVIVANVKPNTVTI 291
A G + + +F+Q+ + DV +N +I A+ S D L L R ++ V PN T
Sbjct: 69 ASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTF 128
Query: 292 VSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340
L AC LA A+ GL FV AL+DMY +C + + IF MP
Sbjct: 129 PFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPA 188
Query: 341 KNLVSWNVMISVYG 354
++LV+WN M++ Y
Sbjct: 189 RDLVAWNAMLAGYA 202
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 119/296 (40%), Gaps = 66/296 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ +G Q+HA L GV G+ LL ++ ++++++
Sbjct: 356 LRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSG 415
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G EE +F M V PD + ACS L + G+ + +I
Sbjct: 416 YVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVI------- 468
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
GL E + N+LID YAKC + +S F+ + +
Sbjct: 469 -------------------IRGLASETS----ICNALIDMYAKCGRIDLSRQVFNMMPSR 505
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSWN M+AGY + G +E T L +EM P+ ++ +L+AC+ V GK
Sbjct: 506 DIVSWNTMIAGYGIHGLGKEATALF--LEMNNLGFPPDGVTFICLLSACSHSGLVIEGKH 563
Query: 220 -----IHGYVL----RHHI---HLSTACGFVICSCSVFNQLSTR-DVVVWNSIISA 262
HGY L H+I L + GF+ + + R DV VW +++ A
Sbjct: 564 WFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGA 619
>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/364 (23%), Positives = 174/364 (47%), Gaps = 57/364 (15%)
Query: 15 GVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVR-PDHFVCPKVYK 73
G F ++ L+V W SM+ + + + M+++ PD F P + K
Sbjct: 29 GYAYSVFAHTRELDVL-TWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLK 87
Query: 74 ACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN 133
C+ L +++VGK ++ ++ + ++ LL+++ CG ++ LFE M
Sbjct: 88 GCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMG------ 141
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
++ V W +M++GY E L +ME +
Sbjct: 142 ------------------------HRNKVVWTSMISGYMKNHCPNEALLLYKKME--EDG 175
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSC 242
P+ ++++ +++ACA++K + +G +H ++ +++ CG + +
Sbjct: 176 FSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTAR 235
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVLPACLKL 301
VF++LS +DV W+++I +V++ + +AL L R+V +N++PN VTI++V+ AC +L
Sbjct: 236 QVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQL 295
Query: 302 AALPQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
L G ++ N+LIDM+ +CG I +++IF M +K+L+SWN M+
Sbjct: 296 GDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMV 355
Query: 351 SVYG 354
+ +
Sbjct: 356 NGFA 359
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 153/332 (46%), Gaps = 58/332 (17%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WTSM+ Y E + L+ M + G PD + AC+ELKD VG ++ ++
Sbjct: 148 WTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHI- 206
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDF--LVNNSLIDFYAKCRYLKVSH 150
EMD ++ ++L++ YAKC LK +
Sbjct: 207 -------------------------------REMDMKICAVLGSALVNMYAKCGDLKTAR 235
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F K+ KD+ +W+A++ GY E L E+ ++M+PN +++ V++ACAQ
Sbjct: 236 QVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAG-GSNMRPNEVTILAVISACAQ 294
Query: 211 VKGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ ++ G+ +H Y+ R H + L+ + CG + + +F+ +S +D++ WNS+
Sbjct: 295 LGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSM 354
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------G 307
++ F G +AL R + +++P+ +T + VL AC + + G
Sbjct: 355 VNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYG 414
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+ S + ++D+ R G + ++R+ +MP
Sbjct: 415 VRLKSEHYGCMVDLLCRAGLLAEAREFIRVMP 446
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 107/241 (44%), Gaps = 56/241 (23%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYN 41
+G+++H+H+ +++CA LGS L+ ++ W++++ Y
Sbjct: 198 VGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYV 257
Query: 42 VLGYYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
E + LF + +RP+ V AC++L D G+ V+DY+ + +
Sbjct: 258 KNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSV 317
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
+ L+D+F KCG ++ +F+ M KD
Sbjct: 318 SLNNSLIDMFSKCGDIDAAKRIFDSMS------------------------------YKD 347
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQ-TDMQPNTISLSGVLAACAQVKGVKLGKA 219
L+SWN+M+ G+AL G E L + ++Q TD+QP+ I+ GVL AC+ V+ GK
Sbjct: 348 LISWNSMVNGFALHGLGREA---LAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKK 404
Query: 220 I 220
+
Sbjct: 405 L 405
>gi|302810761|ref|XP_002987071.1| hypothetical protein SELMODRAFT_125319 [Selaginella moellendorffii]
gi|300145236|gb|EFJ11914.1| hypothetical protein SELMODRAFT_125319 [Selaginella moellendorffii]
Length = 589
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 155/343 (45%), Gaps = 50/343 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+WT M Y G+ E + L M +D RPD FV +AC+ L+D + ++D
Sbjct: 25 SWTLMTAAYIQNGHMELALRLLQEMDLDGSSRPDSFVFANSVRACAALQDLATARALHDR 84
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ + +GL D L+ NSL++ Y+KC L +
Sbjct: 85 IFA--------------------------TGLLH---SDTLLQNSLVNLYSKCGSLADAI 115
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F +I KDLVSWN+ML + G + L ME+ + + I+L ++ ACA
Sbjct: 116 RVFDEISNKDLVSWNSMLRAHVENGEPLKALKLHQRMELEGVWNEADDITLLCLVQACAD 175
Query: 211 VKGVKLGKAIHGYVLRHH----------IHLSTACGFVICSCSVFNQL--STRDVVVWNS 258
+ + + + + + R + + CG + + VF L S++ VV W
Sbjct: 176 LGSLTVARELDTRITRSRAMAAKMANGLVSMYAKCGSLEDAEDVFEDLPSSSKSVVAWTC 235
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC--------LKLAALPQGLGT 310
+I + ++G+ DAL R + + VKP+TV V+VL C + + GL
Sbjct: 236 LIDGYAQAGRGKDALRAYRRMELEGVKPDTVAFVAVLGGCDLSSDIRKIHSSVQEAGLEM 295
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V AL + YGRC + +RKIF MP KN+V+WN M++ Y
Sbjct: 296 TIGVATALTNAYGRCHEVDAARKIFDAMPEKNVVTWNSMVAAY 338
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 130/288 (45%), Gaps = 48/288 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT ++ Y G ++ + + M +GV+PD V C + D+
Sbjct: 233 WTCLIDGYAQAGRGKDALRAYRRMELEGVKPDTVAFVAVLGGCD------LSSDIRKIHS 286
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
S++ G +E+T G V +L + Y +C + +
Sbjct: 287 SVQEAG-----------------LEMTIG----------VATALTNAYGRCHEVDAARKI 319
Query: 153 FSKIKQKDLVSWNAMLAGYALGG-FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +K++V+WN+M+A Y+ G F E NL +M ++ + P+ + VL AC+ +
Sbjct: 320 FDAMPEKNVVTWNSMVAAYSQHGLFAGEALNLHWQMNVL--GVVPDEFTYLSVLGACSSL 377
Query: 212 KGVKLGKAIHGYVLRHHI--HLSTACGFVI----CSC-----SVFNQL-STRDVVVWNSI 259
+ V+ G+ H +L + ++S AC V C C ++F+ + STRDVV W S+
Sbjct: 378 RNVEQGRETHARILERSLETNMSLACALVTMYGECGCLESAKAIFDGMASTRDVVAWTSM 437
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
I A R ++L R++ +A V PN V++ +L AC L + +
Sbjct: 438 IGASSRCKDGRRTMELFREMSLAGVNPNEVSLTCLLNACSHLGMMDEA 485
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 121/242 (50%), Gaps = 27/242 (11%)
Query: 139 FYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT 198
Y +C + + F +I +++ SW M A Y G E LL EM++ + +P++
Sbjct: 1 MYGRCGSIIDARAVFQEIWTRNVFSWTLMTAAYIQNGHMELALRLLQEMDLDGSS-RPDS 59
Query: 199 ISLSGVLAACAQVKGVKLGKAIHGYV----LRHH--------IHLSTACGFVICSCSVFN 246
+ + ACA ++ + +A+H + L H ++L + CG + + VF+
Sbjct: 60 FVFANSVRACAALQDLATARALHDRIFATGLLHSDTLLQNSLVNLYSKCGSLADAIRVFD 119
Query: 247 QLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV--KPNTVTIVSVLPACLKLAAL 304
++S +D+V WNS++ A V +G+ + AL L + + + V + + +T++ ++ AC L +L
Sbjct: 120 EISNKDLVSWNSMLRAHVENGEPLKALKLHQRMELEGVWNEADDITLLCLVQACADLGSL 179
Query: 305 ----------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP--HKNLVSWNVMISV 352
+ + + N L+ MY +CG+++ + +F +P K++V+W +I
Sbjct: 180 TVARELDTRITRSRAMAAKMANGLVSMYAKCGSLEDAEDVFEDLPSSSKSVVAWTCLIDG 239
Query: 353 YG 354
Y
Sbjct: 240 YA 241
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 117/240 (48%), Gaps = 25/240 (10%)
Query: 134 NSLIDFYAKCRYLKVSHCKFSKI--KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
N L+ YAKC L+ + F + K +V+W ++ GYA G ++ ME+
Sbjct: 201 NGLVSMYAKCGSLEDAEDVFEDLPSSSKSVVAWTCLIDGYAQAGRGKDALRAYRRMEL-- 258
Query: 192 TDMQPNTISLSGVLAACAQVKGV-KLGKAIHGYVLRHHIHLSTA-------CGFVICSCS 243
++P+T++ VL C + K+ ++ L I ++TA C V +
Sbjct: 259 EGVKPDTVAFVAVLGGCDLSSDIRKIHSSVQEAGLEMTIGVATALTNAYGRCHEVDAARK 318
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVV-DALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
+F+ + ++VV WNS+++A+ + G +AL+L + V V P+ T +SVL AC L
Sbjct: 319 IFDAMPEKNVVTWNSMVAAYSQHGLFAGEALNLHWQMNVLGVVPDEFTYLSVLGACSSLR 378
Query: 303 ALPQGLGTGSFVWN-----------ALIDMYGRCGAIQKSRKIFVLMPH-KNLVSWNVMI 350
+ QG T + + AL+ MYG CG ++ ++ IF M +++V+W MI
Sbjct: 379 NVEQGRETHARILERSLETNMSLACALVTMYGECGCLESAKAIFDGMASTRDVVAWTSMI 438
>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
Length = 789
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 100/401 (24%), Positives = 178/401 (44%), Gaps = 55/401 (13%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNVLG 44
++HA LI G++ FL + LL ++ N W +M+ + G
Sbjct: 25 KLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVYSWNTMISGFADSG 84
Query: 45 YYEEIVNLFYLMIDK------GVRPDHF---VCPKVYKACSELKDYRVGKDVYDYMISIK 95
E LF M ++ + +F KA L ++ ++ +
Sbjct: 85 QMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGSLGYLKLALQLHGFAEKFD 144
Query: 96 FEGNACVKRPLLDLFIKCGRMEITSGLF-EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFS 154
F + CV+ +LD++IKCG M+ +F + NS+I Y+K +K + F+
Sbjct: 145 FGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFA 204
Query: 155 KIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGV 214
K+ ++D VSWN M++ + GF E N +EM +PN+++ + VL+AC + +
Sbjct: 205 KMPERDTVSWNTMISILSQHGFGAETLNTF--LEMWNQGFRPNSMTYASVLSACTSIYDL 262
Query: 215 KLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAF 263
+ G +H ++R I + CG + + VF+ L+ + V W S+I
Sbjct: 263 EWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGGV 322
Query: 264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGS 312
++G +AL L + V + T+ +VL CL + +GL +
Sbjct: 323 AQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTITRGLDSSV 382
Query: 313 FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V NAL+ MY +CG + K+ F LMP ++++SW MI+ +
Sbjct: 383 PVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAF 423
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 93/376 (24%), Positives = 163/376 (43%), Gaps = 85/376 (22%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ + + G+ E +N F M ++G RP+ V AC+ + D G ++ +
Sbjct: 213 SWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARI 272
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ ++ P LD++ CG LID YAKC L+ +
Sbjct: 273 VRME---------PCLDVYAGCG---------------------LIDMYAKCGRLESARQ 302
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + + + VSW +++ G A GF+EE L ++M + + + +L+ VL C
Sbjct: 303 VFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMR--EVPVASDQFTLATVLGVCLSQ 360
Query: 212 KGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSII 260
K + +G+ +H + + + S CG V + F + RD++ W ++I
Sbjct: 361 KDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMI 420
Query: 261 SAFVRSGQVVDALDLL-----RDVIVAN--------------------------VKPNTV 289
+AF ++G V A + R+VI N VK + +
Sbjct: 421 TAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWI 480
Query: 290 TIVSVLPACLKLAAL-----------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLM 338
T + + AC LA L G + V N+++ MY RCG I++++K+F +
Sbjct: 481 TFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSI 540
Query: 339 PHKNLVSWNVMISVYG 354
KNLVSWN M++ Y
Sbjct: 541 VMKNLVSWNAMMAGYA 556
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 170/346 (49%), Gaps = 27/346 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTS++G G+ EE + LF M + V D F V C KD +G+ ++ +
Sbjct: 314 SWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHT 373
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSH 150
I+ + + V L+ ++ KCG + + FE M +D + ++I +++ ++ +
Sbjct: 374 ITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQAGDVEKAR 433
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F K+ +++++SWN+MLA Y G+ EE L ++M++ ++ + I+ S ++ACA
Sbjct: 434 EYFDKMPERNVISWNSMLATYMQRGYWEE--GLKVYIQMLREGVKTDWITFSTSISACAD 491
Query: 211 V-----------KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ + KLG + + V + + + CG + + +F+ + +++V WN++
Sbjct: 492 LAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMKNLVSWNAM 551
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------G 307
++ + ++GQ +++ ++ P+ ++ VSVL C + + G
Sbjct: 552 MAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSGFVSEGQYYFLSMTKDHG 611
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
+ S + ++D+ GR G +++++ + MP K N W +++
Sbjct: 612 ISPMSEHFVCMVDLLGRAGQLEQAKNLINQMPFKPNAAIWGALLAA 657
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/308 (21%), Positives = 134/308 (43%), Gaps = 30/308 (9%)
Query: 73 KACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEE-MDQDFL 131
K C+ L+ + + ++ +I + + + ++ LL+++ CG + +F M +
Sbjct: 12 KECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVY 71
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
N++I +A ++ + F K+ ++D VSWN+M++GY G E + ++
Sbjct: 72 SWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGSLGYLK 131
Query: 192 TDMQ-----------PNTISLSGVLAACAQVKGVKLGKAI-------HGYVLRHHIHLST 233
+Q +T + VL + + + + + I+ +
Sbjct: 132 LALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGYS 191
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
G V + +F ++ RD V WN++IS + G + L+ ++ +PN++T S
Sbjct: 192 KYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYAS 251
Query: 294 VLPACLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
VL AC + L G + + LIDMY +CG ++ +R++F + N
Sbjct: 252 VLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTEHN 311
Query: 343 LVSWNVMI 350
VSW +I
Sbjct: 312 AVSWTSLI 319
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 128/324 (39%), Gaps = 68/324 (20%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y GY+EE + ++ M+ +GV+ D AC++L +G +
Sbjct: 446 SWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTSISACADLAVLILGNQILAQA 505
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F N V NS++ Y++C ++ +
Sbjct: 506 EKLGFSSNVSVA------------------------------NSVVTMYSRCGQIEEAQK 535
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS I K+LVSWNAM+AGYA G +V + + +M+ P+ IS VL+ C+
Sbjct: 536 MFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFE--KMLNIGNVPDQISYVSVLSGCSHS 593
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V G+ + + H +S +C ++ R+GQ+
Sbjct: 594 GFVSEGQYYFLSMTKDH-GISPMSEHFVC------------------MVDLLGRAGQLEQ 634
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPAC-----LKLAALP-------QGLGTGSFVWNALI 319
A +L+ + KPN ++L AC KLA L G GS+ L
Sbjct: 635 AKNLINQM---PFKPNAAIWGALLAACRIHGNTKLAELAVKNLLELDAEGPGSYC--LLA 689
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNL 343
++Y G IQ + LM K +
Sbjct: 690 NIYSESGKIQGVTNVRKLMRDKGV 713
>gi|449522252|ref|XP_004168141.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g37310-like [Cucumis sativus]
Length = 635
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 105/410 (25%), Positives = 178/410 (43%), Gaps = 67/410 (16%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGY--YEEIVNLFYLMIDK 59
+G Q+HA L++ V FLGS+L+ + S+ YNV G + I + L I
Sbjct: 20 RVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKIPRKNIFSWNALFISY 79
Query: 60 GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG-RMEI 118
+ H K++ + V D + S+K L LF G E+
Sbjct: 80 TLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCSLK---------ALASLFSNSGLAKEV 130
Query: 119 TSGLFEE-MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFR 177
S + ++ D V N+LI FY++C L ++ F ++ ++D VSWNAMLAGY+ GG
Sbjct: 131 HSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDTVSWNAMLAGYSQGGSY 190
Query: 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA--- 234
EE L M + +++PN ++ VL ACAQ + G +H +V I + +
Sbjct: 191 EECKELFRVM-LSSVEVKPNALTAVSVLQACAQSNDLTFGIEVHRFVNESQIKMDVSLWN 249
Query: 235 --------CGFVICSCSVFNQLSTRDVV-------------------------------V 255
CG + + +F ++ +D +
Sbjct: 250 AVIGLYAKCGILDYARELFEEMPEKDGITYCSMISGYMVHGFVNQAMDLFREQERPRLPT 309
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------- 307
WN++IS V++ + A+D+ R + +PNTVT+ S+LP + L G
Sbjct: 310 WNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAI 369
Query: 308 ---LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+V A+ID Y +CG + ++ +F + ++L++W +IS Y
Sbjct: 370 RNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYA 419
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/305 (27%), Positives = 157/305 (51%), Gaps = 19/305 (6%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-GVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W +M+ Y+ G YEE LF +M+ V+P+ V +AC++ D G +V+ +
Sbjct: 176 SWNAMLAGYSQGGSYEECKELFRVMLSSVEVKPNALTAVSVLQACAQSNDLTFGIEVHRF 235
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVS 149
+ + + + + ++ L+ KCG ++ LFEEM ++D + S+I Y ++ +
Sbjct: 236 VNESQIKMDVSLWNAVIGLYAKCGILDYARELFEEMPEKDGITYCSMISGYMVHGFVNQA 295
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + ++ L +WNA+++G +E ++ M+ +PNT++L+ +L +
Sbjct: 296 MDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQ--SHGCRPNTVTLASILPVFS 353
Query: 210 QVKGVKLGKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNS 258
+K GK IHGY +R+ +I+++TA CG++ + VF+Q+ R ++ W S
Sbjct: 354 HFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTS 413
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNAL 318
IISA+ G AL L +++ ++P+ VT SVL AC L + ++N L
Sbjct: 414 IISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWK----IFNVL 469
Query: 319 IDMYG 323
+ YG
Sbjct: 470 LPEYG 474
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 134/270 (49%), Gaps = 25/270 (9%)
Query: 109 LFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAML 168
LF + G+ + + D + + LI FY+K ++ ++ F KI +K++ SWNA+
Sbjct: 17 LFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKIPRKNIFSWNALF 76
Query: 169 AGYALGGFREEVTNLLDEM-EMIQTDMQPNTISLSGVLAACAQV-KGVKLGKAIHGYVLR 226
Y L ++ L + TD++P+ +++ L A A + L K +H ++LR
Sbjct: 77 ISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCSLKALASLFSNSGLAKEVHSFILR 136
Query: 227 HH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDL 275
I + C ++ + +F+++ RD V WN++++ + + G + +L
Sbjct: 137 RGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDTVSWNAMLAGYSQGGSYEECKEL 196
Query: 276 LRDVIVA-NVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNALIDMYG 323
R ++ + VKPN +T VSVL AC + L G+ FV WNA+I +Y
Sbjct: 197 FRVMLSSVEVKPNALTAVSVLQACAQSNDLTFGIEVHRFVNESQIKMDVSLWNAVIGLYA 256
Query: 324 RCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+CG + +R++F MP K+ +++ MIS Y
Sbjct: 257 KCGILDYARELFEEMPEKDGITYCSMISGY 286
>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 580
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 157/299 (52%), Gaps = 23/299 (7%)
Query: 44 GYYEEIVNLFYLMIDK--GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G+ +E +N+F M+ + V D F + +C+ L + + V+ I I N
Sbjct: 125 GFRKESLNVFKTMLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNII 184
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
+ L+D + KCG +I+ +F M ++D + S++ YA+ L+ +H FS++++K+
Sbjct: 185 IGNALIDAYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKN 244
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
VSW A++AG+A G +E +L ++M + + P+ + + VL+ACA + + GK I
Sbjct: 245 TVSWTALIAGFAQNGRGDEALHLFEQMR--EEGIPPSAFTFASVLSACADLALIARGKEI 302
Query: 221 HGYVLRHH--------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
HG+++R I + CG + + ++F + +D+V WNS+I+ F ++
Sbjct: 303 HGHIIRSTCIDYFCNIFILNALIDMYCKCGQMRSATTLFKGMHEKDIVSWNSLITGFAQN 362
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRC 325
G ++L + +I A+++PN VT + +L AC + +GL + +++ YG C
Sbjct: 363 GHGEESLAVFERMIEADIRPNHVTFLGLLSACCHTGLVSEGLR----ILDSMEKDYGVC 417
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/349 (22%), Positives = 152/349 (43%), Gaps = 57/349 (16%)
Query: 63 PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGL 122
P H + C + ++GK ++ + I + L+D + KC ++ +
Sbjct: 12 PAHQHYSSLISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQSAHKV 71
Query: 123 FEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVT 181
F + ++ N +I Y++ +H ++ + +LVS+N++++G GFR+E
Sbjct: 72 FHVLPVKNTHSWNIIISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGFRKESL 131
Query: 182 NLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA--- 234
N+ M +++ + +L ++ +CA + +L + +HG L +I + A
Sbjct: 132 NVFKTMLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALID 191
Query: 235 ----CGFVICSCSVFNQLSTRDVVVWNSIISA---------------------------- 262
CG S S+F+++ RDVV W S+++A
Sbjct: 192 AYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTAL 251
Query: 263 ---FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS------- 312
F ++G+ +AL L + + P+ T SVL AC LA + +G
Sbjct: 252 IAGFAQNGRGDEALHLFEQMREEGIPPSAFTFASVLSACADLALIARGKEIHGHIIRSTC 311
Query: 313 -------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
F+ NALIDMY +CG ++ + +F M K++VSWN +I+ +
Sbjct: 312 IDYFCNIFILNALIDMYCKCGQMRSATTLFKGMHEKDIVSWNSLITGFA 360
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 103/215 (47%), Gaps = 30/215 (13%)
Query: 7 VHAHLIVCGVELCAFLGSQLLEV-FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH 65
V A+ +E +L SQ+ E +WT+++ + G +E ++LF M ++G+ P
Sbjct: 221 VAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDEALHLFEQMREEGIPPSA 280
Query: 66 FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEE 125
F V AC++L GK+++ ++I + +D F
Sbjct: 281 FTFASVLSACADLALIARGKEIHGHII----------RSTCIDYFC-------------- 316
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
+ + N+LID Y KC ++ + F + +KD+VSWN+++ G+A G EE + +
Sbjct: 317 ---NIFILNALIDMYCKCGQMRSATTLFKGMHEKDIVSWNSLITGFAQNGHGEESLAVFE 373
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
M I+ D++PN ++ G+L+AC V G I
Sbjct: 374 RM--IEADIRPNHVTFLGLLSACCHTGLVSEGLRI 406
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 92/222 (41%), Gaps = 63/222 (28%)
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-----------ACGFVIC 240
+ + P S +++ C + +KLGK +H + ++ + +T C +
Sbjct: 8 SSLDPAHQHYSSLISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQS 67
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV----------- 289
+ VF+ L ++ WN IISA+ RSG +A +LL + KPN V
Sbjct: 68 AHKVFHVLPVKNTHSWNIIISAYSRSGLFNEAHNLLDQM----PKPNLVSYNSLISGLGH 123
Query: 290 --------------------------TIVSVLPACLKL-----------AALPQGLGTGS 312
T+VS++ +C L AA+ GL +
Sbjct: 124 HGFRKESLNVFKTMLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNI 183
Query: 313 FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ NALID YG+CG S IF MP +++VSW M++ Y
Sbjct: 184 IIGNALIDAYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYA 225
>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
Length = 870
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 170/344 (49%), Gaps = 54/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W M+G Y +G+ EE ++L+Y M+ G+RPD + P V + C + D+R+G++V+ ++
Sbjct: 164 SWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHV 223
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ G +E+D V N+L+ YAKC + +
Sbjct: 224 LRF--------------------------GFGDEVD----VLNALVTMYAKCGDIVAARK 253
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + D +SWNAM+AG+ E L + M++ ++QPN ++++ V A +
Sbjct: 254 VFDGMAVTDCISWNAMIAGHFENHECEAGLELF--LTMLENEVQPNLMTITSVTVASGML 311
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
V K +HG+ ++ I + T+ G + + +F+++ T+D + W ++I
Sbjct: 312 SEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMI 371
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV---------LPACLKLAALPQGLGTG 311
S + ++G AL++ + + NV P+ VTI S L +KL L Q G
Sbjct: 372 SGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFI 431
Query: 312 SF--VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ V NAL++MY + I K+ ++F M K++VSW+ MI+ +
Sbjct: 432 RYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGF 475
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 107/223 (47%), Gaps = 24/223 (10%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+K+ ++D+ SWN M+ GY GF EE +L M+ M+P+ + VL C +
Sbjct: 154 FAKMPERDVFSWNVMVGGYGKVGFLEEALDLY--YRMLWAGMRPDVYTFPCVLRTCGGIP 211
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++G+ +H +VLR + + CG ++ + VF+ ++ D + WN++I+
Sbjct: 212 DWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIA 271
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGT 310
+ + L+L ++ V+PN +TI SV A L+ A+ +G
Sbjct: 272 GHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAI 331
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
N+LI MY G + + KIF M K+ +SW MIS Y
Sbjct: 332 DVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGY 374
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 149/344 (43%), Gaps = 57/344 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ Y G+ ++ + ++ LM V PD
Sbjct: 366 SWTAMISGYEKNGFPDKALEVYALMELHNVSPDD-------------------------- 399
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
++I AC LD+ IK + G + +V N+L++ YAK +++ +
Sbjct: 400 VTIASALAACACLGRLDVGIKLHELAQNKGFIRYV----VVANALLEMYAKSKHIDKAIE 455
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +KD+VSW++M+AG+ F L + ++PN+++ L+ACA
Sbjct: 456 VFKFMAEKDVVSWSSMIAGFC---FNHRSFEALYYFRYMLGHVKPNSVTFIAALSACAAT 512
Query: 212 KGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ GK IH YVLR I L CG + + F+ S +DVV WN ++
Sbjct: 513 GALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIML 572
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----LGTGSFV- 314
S FV G AL L ++ P+ VT V++L AC + + QG + T F
Sbjct: 573 SGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSI 632
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMIS 351
+ ++D+ R G + ++ + MP K + W +++
Sbjct: 633 VPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLN 676
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 25/164 (15%)
Query: 205 LAACAQVK------GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ ACA+ G++LG A+ ++R G + + VF ++ RDV WN
Sbjct: 116 MRACARADAEHPSFGLRLGNAMLSMLVRF--------GEIWHAWRVFAKMPERDVFSWNV 167
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQG 307
++ + + G + +ALDL ++ A ++P+ T VL C + L G
Sbjct: 168 MVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFG 227
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
G V NAL+ MY +CG I +RK+F M + +SWN MI+
Sbjct: 228 FGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIA 271
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 14/109 (12%)
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGT------ 310
++ + A GQ+ AL LL + P+ V++ C A+ G+
Sbjct: 68 SAALRALCSHGQLAQALWLLES---SPEPPDEGAYVALFRLCEWRRAVDAGMRACARADA 124
Query: 311 -----GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G + NA++ M R G I + ++F MP +++ SWNVM+ YG
Sbjct: 125 EHPSFGLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYG 173
>gi|297828580|ref|XP_002882172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297328012|gb|EFH58431.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 638
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 168/344 (48%), Gaps = 52/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +++ + ++E+++ F M +PD+F P KAC EL++ + G+ ++ ++
Sbjct: 8 QWNTLLKSLSRDKHWEQVMCHFSQMFRDEEKPDNFTLPVALKACGELREVKYGEMIHGFL 67
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ +T G D V +SLI Y KC + +
Sbjct: 68 -----------------------KKNVTLG------SDLYVGSSLIYMYVKCGRMTEALR 98
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+++++ D+V+W++M++G+ G + M +D+ P+ ++L +++AC ++
Sbjct: 99 MFNELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRM-ATASDVTPDRVTLITLVSACTKL 157
Query: 212 KGVKLGKAIHGYVLRHHIH--LSTACGFVIC---------SCSVFNQLSTRDVVVWNSII 260
+LG+ +HG+V+R LS + C + ++F ++ +DV+ W+++I
Sbjct: 158 SNSRLGRCVHGFVMRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMMAEKDVISWSTVI 217
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------- 313
+ +V++G +AL + ++I +PN T++ VL AC L QG T
Sbjct: 218 ACYVQNGAAAEALRVFNEMIDDGTEPNVATVLCVLQACAAANDLEQGRKTHELAIRKGLE 277
Query: 314 ----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V AL+DMY +C + +++ +F +P K++VSW +IS +
Sbjct: 278 TEVKVSTALVDMYMKCFSPEEAYAVFSRIPKKDVVSWVALISGF 321
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/332 (25%), Positives = 153/332 (46%), Gaps = 55/332 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W++++ Y G E + +F MID G P+ V +AC+ D G+ ++
Sbjct: 212 SWSTVIACYVQNGAAAEALRVFNEMIDDGTEPNVATVLCVLQACAAANDLEQGRKTHE-- 269
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ I GL E+ V+ +L+D Y KC + ++
Sbjct: 270 ------------------------LAIRKGLETEVK----VSTALVDMYMKCFSPEEAYA 301
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS+I +KD+VSW A+++G+ L G M +++ + +P+ I + VL +C+++
Sbjct: 302 VFSRIPKKDVVSWVALISGFTLNGMAHRSIEEFSIM-LLENNTRPDAILMLKVLGSCSEL 360
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+K + H YV+++ + L + CG + + VFN+++ +D VVW S+I
Sbjct: 361 GFLKQAECFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNEIALKDTVVWTSLI 420
Query: 261 SAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN--- 316
+ + G+ AL+ ++ + VKPN VT +S+L AC + +GL + N
Sbjct: 421 TGYGIHGKGTKALETFNHMVRSSEVKPNEVTFLSILSACSHAGLIHEGLRIFELMVNDYR 480
Query: 317 ---------ALIDMYGRCGAIQKSRKIFVLMP 339
L+D+ GR G + + +I MP
Sbjct: 481 LAPNLEHYAVLVDLLGRVGELDTAIEITKRMP 512
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/346 (24%), Positives = 157/346 (45%), Gaps = 56/346 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W+SM+ + G + V F M V PD + AC++L + R+G+ V+ ++
Sbjct: 111 WSSMVSGFEKNGSPYQAVEFFRRMATASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFV 170
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F D + NSL++ YAK R K +
Sbjct: 171 MRRGF------------------------------SNDLSLVNSLLNCYAKSRAFKEAVN 200
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +KD++SW+ ++A Y G E + +EM I +PN ++ VL ACA
Sbjct: 201 LFKMMAEKDVISWSTVIACYVQNGAAAEALRVFNEM--IDDGTEPNVATVLCVLQACAAA 258
Query: 212 KGVKLGKAIHGYVLRH----HIHLSTACGFVICSC-------SVFNQLSTRDVVVWNSII 260
++ G+ H +R + +STA + C +VF+++ +DVV W ++I
Sbjct: 259 NDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPKKDVVSWVALI 318
Query: 261 SAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPACLKLAALPQ-----------GL 308
S F +G +++ +++ N +P+ + ++ VL +C +L L Q G
Sbjct: 319 SGFTLNGMAHRSIEEFSIMLLENNTRPDAILMLKVLGSCSELGFLKQAECFHSYVIKYGF 378
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ F+ +L+++Y RCG++ + K+F + K+ V W +I+ YG
Sbjct: 379 DSNPFIGASLVELYSRCGSLGNASKVFNEIALKDTVVWTSLITGYG 424
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 114/222 (51%), Gaps = 26/222 (11%)
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
+ ++ L WN +L + E+V + +M + + +P+ +L L AC +++ VK
Sbjct: 1 MTKRTLYQWNTLLKSLSRDKHWEQV--MCHFSQMFRDEEKPDNFTLPVALKACGELREVK 58
Query: 216 LGKAIHG------------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAF 263
G+ IHG YV I++ CG + + +FN+L D+V W+S++S F
Sbjct: 59 YGEMIHGFLKKNVTLGSDLYVGSSLIYMYVKCGRMTEALRMFNELEKPDIVTWSSMVSGF 118
Query: 264 VRSGQVVDALDLLRDVIVA-NVKPNTVTIVSVLPACLKLA-----------ALPQGLGTG 311
++G A++ R + A +V P+ VT+++++ AC KL+ + +G
Sbjct: 119 EKNGSPYQAVEFFRRMATASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVMRRGFSND 178
Query: 312 SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ N+L++ Y + A +++ +F +M K+++SW+ +I+ Y
Sbjct: 179 LSLVNSLLNCYAKSRAFKEAVNLFKMMAEKDVISWSTVIACY 220
>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
chloroplastic-like [Vitis vinifera]
Length = 858
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 169/345 (48%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++G+ +G+ E+ + F M + GV PD+FV P V KAC L+ +GK V+ Y+
Sbjct: 149 SWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYV 208
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + F V L+D++ KCG +E +F+ M
Sbjct: 209 LKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSM------------------------- 243
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+K++V+WN+M+ GY G +E ++ +M + ++P ++++ L+A A +
Sbjct: 244 -----VEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRV--EGIEPTRVTVASFLSASANL 296
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCS-----------VFNQLSTRDVVVWNSII 260
+ GK H + + + L G I + VF+++ +DVV WN +I
Sbjct: 297 DALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLI 356
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----LKLAA------LPQGLG 309
S++V+ QV AL++ + N++ ++VT+ S+L A +KL + + L
Sbjct: 357 SSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLE 416
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ V N++IDMY +C I +RK+F ++LV WN +++ Y
Sbjct: 417 SDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYA 461
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 152/299 (50%), Gaps = 32/299 (10%)
Query: 77 ELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSL 136
E +D+++G ++Y ++ CV L + + +G F ++ V L
Sbjct: 71 EFEDFQIGPEIYGELL------QGCVYERALHTGQQIHARILKNGDF--FAKNEYVETKL 122
Query: 137 IDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP 196
+ FYAKC + +V+ F +++ +++ SW A++ GF E+ LL +EM + + P
Sbjct: 123 VVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDA--LLGFIEMQENGVFP 180
Query: 197 NTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVF 245
+ L VL AC ++ + LGK +HGYVL+ + + CG + + VF
Sbjct: 181 DNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVF 240
Query: 246 NQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP 305
+ + ++VV WNS+I +V++G +A+D+ D+ V ++P VT+ S L A L AL
Sbjct: 241 DSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALI 300
Query: 306 QG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+G L + + +++I+ Y + G I+ + +F M K++V+WN++IS Y
Sbjct: 301 EGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSY 359
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 93/420 (22%), Positives = 187/420 (44%), Gaps = 86/420 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G Q HA I+ ++L LGS ++ + W ++ Y
Sbjct: 302 GKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQ 361
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+ +N+ +LM + +R D + A + + ++GK+ + Y I E + V
Sbjct: 362 HHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVV 421
Query: 103 KRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKC------------------ 143
++D++ KC R++ +F+ ++D ++ N+L+ YA+
Sbjct: 422 ANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSV 481
Query: 144 ---------------RYLKVSHCK--FSKIK----QKDLVSWNAMLAGYALGGFREEVTN 182
R +V+ K FS+++ Q +L++W +++G A GF E
Sbjct: 482 PPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAIL 541
Query: 183 LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS---------- 232
+M+ + ++P+ S++ VL AC + + G+AIHG++ RH LS
Sbjct: 542 FFQKMQ--EAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVDM 599
Query: 233 -TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI 291
CG + + VF+ +S++++ ++N++ISA+ GQ V+AL L + + ++P+++T
Sbjct: 600 YAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSITF 659
Query: 292 VSVLPACLKLAALPQGLG-----TGSFVWNALIDMYG-------RCGAIQKSRKIFVLMP 339
S+L AC + +GL N +++ YG RCG + ++ ++ + MP
Sbjct: 660 TSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILTMP 719
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 101/466 (21%), Positives = 189/466 (40%), Gaps = 147/466 (31%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYN 41
LG VH +++ G C F+ S L++++ W SM+ Y
Sbjct: 200 LGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYV 259
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G +E +++FY M +G+ P A + L GK +G+A
Sbjct: 260 QNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGK-----------QGHAI 308
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ +D D ++ +S+I+FY+K ++ + FS++ +KD+
Sbjct: 309 -------------------AILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDV 349
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNTISLSGVLAACAQVKGVKLGKAI 220
V+WN +++ Y +V L+ +++++ ++ ++++LS +L+A A +KLGK
Sbjct: 350 VTWNLLISSYVQ---HHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEG 406
Query: 221 HGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISA------- 262
H Y +R + I + C + + VF+ + RD+V+WN++++A
Sbjct: 407 HCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLS 466
Query: 263 ----------------------------FVRSGQVVDALDLL------------------ 276
F+R+GQV +A D+
Sbjct: 467 GEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTL 526
Query: 277 -----------------RDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------ 313
+ + A ++P+ +I SVL AC + +L G F
Sbjct: 527 ISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEF 586
Query: 314 -----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V +L+DMY +CG+I +++K+F +M K L +N MIS Y
Sbjct: 587 CLSVPVATSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYA 632
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 111/237 (46%), Gaps = 32/237 (13%)
Query: 147 KVSHCKFSKIKQKD------LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTIS 200
K + + +K+++KD S+ ++ G +E +LL EME D Q
Sbjct: 24 KFASTRLAKLQEKDENRRSLYKSYFHHISSLCKDGHLQESVHLLSEMEF--EDFQIGPEI 81
Query: 201 LSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS-------------TACGFVICSCSVFNQ 247
+L C + + G+ IH +L++ + C F + +F++
Sbjct: 82 YGELLQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHR 141
Query: 248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC--LKLAALP 305
L R+V W +I+ R G DAL ++ V P+ + +VL AC L+L L
Sbjct: 142 LRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLG 201
Query: 306 QG-------LGTGS--FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+G +G G+ FV ++L+DMYG+CG ++ +RK+F M KN+V+WN MI Y
Sbjct: 202 KGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGY 258
>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Vitis vinifera]
Length = 729
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/379 (25%), Positives = 186/379 (49%), Gaps = 64/379 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
+TSM+ Y+ L + ++V ++ M GVRPD FV P + K+ G + +++
Sbjct: 68 FTSMLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGT-----GGIGFHAHVL 122
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-------------------------- 126
+ +A V+ ++D++ + G + +F+E+
Sbjct: 123 KLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQA 182
Query: 127 --------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFRE 178
+++ + +++ YAK + L+ + F + ++ +VSWNAML+GYA G E
Sbjct: 183 QWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAE 242
Query: 179 EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK----GVKLGKAIHGYVLRHHIHLSTA 234
E L D EM+ ++P+ + V++AC+ L + +H ++ + + TA
Sbjct: 243 EALRLFD--EMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTA 300
Query: 235 C-------GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA-NVKP 286
G + + +FN + R+VV WNS+I+ + ++GQ A++L +++I A + P
Sbjct: 301 LLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTP 360
Query: 287 NTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIF 335
+ VT+VSV+ AC L AL G F+ NA+I MY RCG+++ ++++F
Sbjct: 361 DEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVF 420
Query: 336 VLMPHKNLVSWNVMISVYG 354
M +++VS+N +IS +
Sbjct: 421 QEMATRDVVSYNTLISGFA 439
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/326 (24%), Positives = 147/326 (45%), Gaps = 49/326 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G EE + LF M++ G+ PD V ACS D + + +
Sbjct: 227 SWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTL 286
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + N V+ LLD++ K G ++ L
Sbjct: 287 HQKRIQLNCFVRTALLDMYAKFGDLDSARKL----------------------------- 317
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ + +++V+WN+M+AGYA G L EM + + P+ +++ V++AC +
Sbjct: 318 -FNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEM-ITAKKLTPDEVTMVSVISACGHL 375
Query: 212 KGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSII 260
++LG + ++ + I LS + CG + + VF +++TRDVV +N++I
Sbjct: 376 GALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLI 435
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALID 320
S F G V+A++L+ + ++P+ VT + VL AC L +G + + ID
Sbjct: 436 SGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAID 495
Query: 321 MY-------GRCGAIQKSRKIFVLMP 339
Y GR G ++ +++ MP
Sbjct: 496 HYACMVDLLGRVGELEDAKRTMERMP 521
>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
Length = 845
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 106/421 (25%), Positives = 188/421 (44%), Gaps = 106/421 (25%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLL-------EVFC--------------NWTSMMGMYNV 42
G QVH ++ G E F+ + L+ E+ C +WTS++G Y
Sbjct: 158 GFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAK 217
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G Y+E V+LF+ M++ G+RP+ V AC++L+D ++G+ V + ++ E NA +
Sbjct: 218 RGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALM 277
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L+D+++KCG ++ +F+E +D K+LV
Sbjct: 278 VNALVDMYMKCGAIDKARKIFDE----------CVD--------------------KNLV 307
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+N +++ Y G EV +L EM++ +P+ I++ ++AC+++ V GK HG
Sbjct: 308 LYNTIMSNYVRQGLAREVLAVLG--EMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHG 365
Query: 223 YVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV- 270
YVLR+ I++ CG +C VF+++ + V WNS+I+ FVR+G +
Sbjct: 366 YVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMES 425
Query: 271 ------------------------------DALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+A++L R + + + VT+V V AC
Sbjct: 426 AWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGY 485
Query: 301 LAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L AL ++ AL+DM+ RCG Q + ++F M +++ +W
Sbjct: 486 LGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAA 545
Query: 350 I 350
I
Sbjct: 546 I 546
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 172/343 (50%), Gaps = 54/343 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
++S++ ++ G + + +F ++ G PD+F P V AC++ G V+ ++
Sbjct: 107 FSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIV 166
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ FE +D V NSLI FY +C +
Sbjct: 167 KMGFE------------------------------RDMFVENSLIHFYGECGEIDCMRRV 196
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F K+ ++++VSW +++ GYA G +E +L EM++ ++PN++++ GV++ACA+++
Sbjct: 197 FDKMSERNVVSWTSLIGGYAKRGCYKEAVSLF--FEMVEVGIRPNSVTMVGVISACAKLQ 254
Query: 213 GVKLGK-----------AIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++LG+ ++ ++ + + CG + + +F++ +++V++N+I+S
Sbjct: 255 DLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMS 314
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGT 310
+VR G + L +L +++ +P+ +T++S + AC +L L GL
Sbjct: 315 NYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEG 374
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V NA+I+MY +CG + + ++F M +K VSWN +I+ +
Sbjct: 375 WDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGF 417
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 156/345 (45%), Gaps = 27/345 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
+ ++M Y G E++ + M+ G RPD ACSEL D GK + Y++
Sbjct: 309 YNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVL 368
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHC 151
EG V ++++++KCG+ E+ +F+ M V+ NSLI + + ++ +
Sbjct: 369 RNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWK 428
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS + DLVSWN M+ +E L M+ + + +++ GV +AC +
Sbjct: 429 IFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQ--SEGITADKVTMVGVASACGYL 486
Query: 212 KGVKLGKAIHGYVLRHHI----HLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ L K IHGY+ + I HL TA CG + VFN++ RDV W + I
Sbjct: 487 GALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAI 546
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GL 308
A G A++L +++ +KP+ V V++L A + Q G+
Sbjct: 547 GAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGI 606
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ + ++D+ GR G + ++ + M N V W +++
Sbjct: 607 APQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAA 651
>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 170/320 (53%), Gaps = 27/320 (8%)
Query: 60 GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEIT 119
G+ D+F P V K+C++L +G+ V+ + + EG+ V L+D+++KCG +
Sbjct: 102 GLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDA 161
Query: 120 SGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFRE 178
LF++M +D N+LI Y K + V+ F +++ +++VSW AM++GY GF E
Sbjct: 162 RKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAE 221
Query: 179 EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA---- 234
+ L DEM ++M+PN +++ VL ACAQ ++ G+ IH + +HL+++
Sbjct: 222 QALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTA 281
Query: 235 -------CGFVICSCSVFNQLST--RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK 285
C ++ + F+ ++ ++++ WN++I+A+ G V+A+ + +++ A V+
Sbjct: 282 LAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQ 341
Query: 286 PNTVTIVSVLPACLKLAALPQGL------GTGSFV------WNALIDMYGRCGAIQKSRK 333
P+ VT + +L C + GL GT V + ++D+ GR G + ++++
Sbjct: 342 PDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKE 401
Query: 334 IFVLMPHKNLVS-WNVMISV 352
+ MP + S W +++
Sbjct: 402 LISQMPMQAGPSVWGALLAA 421
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 57/214 (26%)
Query: 197 NTISLSGVLAACAQVKGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVF 245
+ +L VL +CA + V +G+ +HG LR I + CG + + +F
Sbjct: 106 DNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLF 165
Query: 246 NQLSTRDVVVWNSIISAFVRSGQVVDALDLL-----RDVIV------------------- 281
+++ RD+ WN++I+ +++ G++ A DL R+++
Sbjct: 166 DKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALG 225
Query: 282 ---------ANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDM 321
+ +KPN VTIVSVLPAC + AAL +G L S V AL M
Sbjct: 226 LFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGM 285
Query: 322 YGRCGAIQKSRKIFVLMPH--KNLVSWNVMISVY 353
Y +C ++ ++R F ++ KNL++WN MI+ Y
Sbjct: 286 YAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAY 319
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 80/183 (43%), Gaps = 36/183 (19%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKG--VRPDHFVCPKVYKACSELKDYRVGKDVYD 89
+WT+M+ Y G+ E+ + LF M+ G ++P+ V AC++ G+ ++D
Sbjct: 206 SWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHD 265
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
+ I N+ V+ +L YAKC L +
Sbjct: 266 FANGIGLHLNSSVQ------------------------------TALAGMYAKCYSLVEA 295
Query: 150 HCKFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
C F I Q K+L++WN M+ YA G E ++ + M++ +QP+ ++ G+L+
Sbjct: 296 RCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFE--NMLRAGVQPDAVTFMGLLSG 353
Query: 208 CAQ 210
C+
Sbjct: 354 CSH 356
>gi|356532311|ref|XP_003534717.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Glycine max]
Length = 755
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 104/396 (26%), Positives = 176/396 (44%), Gaps = 78/396 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMY 40
LG+ +H ++V G+ L A++ S L+ + WT+++G Y
Sbjct: 78 SLGLTLHQRILVSGLSLDAYIASSLINFYAKFGFADVARKVFDYMPERNVVPWTTIIGCY 137
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+ G E +LF M +G++P + SEL + G A
Sbjct: 138 SRTGRVPEAFSLFDEMRRQGIQPSSVTVLSLLFGVSELAHVQC------------LHGCA 185
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
I G +++ ++NS+++ Y KC ++ S F + +D
Sbjct: 186 -----------------ILYGFMSDIN----LSNSMLNVYGKCGNIEYSRKLFDYMDHRD 224
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
LVSWN++++ YA G EV LL M + + P T VL+ A +KLG+ +
Sbjct: 225 LVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEAGPQT--FGSVLSVAASRGELKLGRCL 282
Query: 221 HGYVLRHHIHLSTAC-----------GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
HG +LR +L G + + +F + S +DVV+W ++IS V++G
Sbjct: 283 HGQILRAGFYLDAHVETSLIVVYLKGGKIDIAFRMFERSSDKDVVLWTAMISGLVQNGSA 342
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLGTGSFVWNAL 318
AL + R ++ VKP+T T+ SV+ AC +L + L Q L N+L
Sbjct: 343 DKALAVFRQMLKFGVKPSTATMASVITACAQLGSYNLGTSILGYILRQELPLDVATQNSL 402
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ MY +CG + +S +F +M ++LVSWN M++ Y
Sbjct: 403 VTMYAKCGHLDQSSIVFDMMNRRDLVSWNAMVTGYA 438
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 164/345 (47%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ Y +G E++ L M +G V + + ++G+ ++ +
Sbjct: 227 SWNSLISAYAQIGNICEVLLLLKTMRLQGFEAGPQTFGSVLSVAASRGELKLGRCLHGQI 286
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F +A V+ L+ +++K G+++I +FE
Sbjct: 287 LRAGFYLDAHVETSLIVVYLKGGKIDIAFRMFE--------------------------- 319
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+ KD+V W AM++G G ++ + +M++ ++P+T +++ V+ ACAQ+
Sbjct: 320 ---RSSDKDVVLWTAMISGLVQNGSADKALAVF--RQMLKFGVKPSTATMASVITACAQL 374
Query: 212 KGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSII 260
LG +I GY+LR + L A CG + S VF+ ++ RD+V WN+++
Sbjct: 375 GSYNLGTSILGYILRQELPLDVATQNSLVTMYAKCGHLDQSSIVFDMMNRRDLVSWNAMV 434
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW----- 315
+ + ++G V +AL L ++ N P+++TIVS+L C L G SFV
Sbjct: 435 TGYAQNGYVCEALFLFNEMRSDNQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLR 494
Query: 316 ------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+L+DMY +CG + +++ F MP +LVSW+ +I YG
Sbjct: 495 PCILVDTSLVDMYCKCGDLDTAQRCFNQMPSHDLVSWSAIIVGYG 539
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 131/287 (45%), Gaps = 43/287 (14%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT+M+ G ++ + +F M+ GV+P V AC++L Y +G + Y+
Sbjct: 329 WTAMISGLVQNGSADKALAVFRQMLKFGVKPSTATMASVITACAQLGSYNLGTSILGYI- 387
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
L +E+ D NSL+ YAKC +L S
Sbjct: 388 -----------------------------LRQELPLDVATQNSLVTMYAKCGHLDQSSIV 418
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + ++DLVSWNAM+ GYA G+ E L +EM + P++I++ +L CA
Sbjct: 419 FDMMNRRDLVSWNAMVTGYAQNGYVCEALFLFNEMR--SDNQTPDSITIVSLLQGCASTG 476
Query: 213 GVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ LGK IH +V+R+ + + CG + + FNQ+ + D+V W++II
Sbjct: 477 QLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLDTAQRCFNQMPSHDLVSWSAIIV 536
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
+ G+ AL + + +KPN V +SVL +C + QGL
Sbjct: 537 GYGYHGKGEAALRFYSKFLESGMKPNHVIFLSVLSSCSHNGLVEQGL 583
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 107/211 (50%), Gaps = 21/211 (9%)
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH- 221
S NA + ++ G +V L M++T + + + +L AC+ + LG +H
Sbjct: 28 SVNATINHHSTQGAHHQV--LATYASMLKTHVPSDAYTFPSLLKACSFLNLFSLGLTLHQ 85
Query: 222 ----------GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
Y+ I+ GF + VF+ + R+VV W +II + R+G+V +
Sbjct: 86 RILVSGLSLDAYIASSLINFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRVPE 145
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPA--------CLKLAALPQGLGTGSFVWNALIDMYG 323
A L ++ ++P++VT++S+L CL A+ G + + N+++++YG
Sbjct: 146 AFSLFDEMRRQGIQPSSVTVLSLLFGVSELAHVQCLHGCAILYGFMSDINLSNSMLNVYG 205
Query: 324 RCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+CG I+ SRK+F M H++LVSWN +IS Y
Sbjct: 206 KCGNIEYSRKLFDYMDHRDLVSWNSLISAYA 236
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 149/334 (44%), Gaps = 57/334 (17%)
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
++ G + +++ + M+ V D + P + KACS L + +G ++ ++
Sbjct: 36 HSTQGAHHQVLATYASMLKTHVPSDAYTFPSLLKACSFLNLFSLGLTLHQRIL------- 88
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
SGL D + +SLI+FYAK + V+ F + ++
Sbjct: 89 -------------------VSGL----SLDAYIASSLINFYAKFGFADVARKVFDYMPER 125
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
++V W ++ Y+ G E +L DEM + +QP+++++ +L +++ V +
Sbjct: 126 NVVPWTTIIGCYSRTGRVPEAFSLFDEMR--RQGIQPSSVTVLSLLFGVSELAHV---QC 180
Query: 220 IHG----YVLRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+HG Y I+LS + CG + S +F+ + RD+V WNS+ISA+ + G
Sbjct: 181 LHGCAILYGFMSDINLSNSMLNVYGKCGNIEYSRKLFDYMDHRDLVSWNSLISAYAQIGN 240
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPA-----------CLKLAALPQGLGTGSFVWNA 317
+ + L LL+ + + + T SVL CL L G + V +
Sbjct: 241 ICEVLLLLKTMRLQGFEAGPQTFGSVLSVAASRGELKLGRCLHGQILRAGFYLDAHVETS 300
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
LI +Y + G I + ++F K++V W MIS
Sbjct: 301 LIVVYLKGGKIDIAFRMFERSSDKDVVLWTAMIS 334
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 77/190 (40%), Gaps = 32/190 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y GY E + LF M PD + + C+ +GK ++ ++
Sbjct: 429 SWNAMVTGYAQNGYVCEALFLFNEMRSDNQTPDSITIVSLLQGCASTGQLHLGKWIHSFV 488
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I V L+D++ KCG + D +C
Sbjct: 489 IRNGLRPCILVDTSLVDMYCKCGDL---------------------DTAQRC-------- 519
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+++ DLVSW+A++ GY G E + +++ M+PN + VL++C+
Sbjct: 520 -FNQMPSHDLVSWSAIIVGYGYHGKGEAALRFYS--KFLESGMKPNHVIFLSVLSSCSHN 576
Query: 212 KGVKLGKAIH 221
V+ G I+
Sbjct: 577 GLVEQGLNIY 586
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 69/155 (44%), Gaps = 30/155 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ LG +H+ +I G+ C + + L++++C +W++++
Sbjct: 478 LHLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLDTAQRCFNQMPSHDLVSWSAIIVG 537
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY-----DYMISI 94
Y G E + + ++ G++P+H + V +CS G ++Y D+ I+
Sbjct: 538 YGYHGKGEAALRFYSKFLESGMKPNHVIFLSVLSSCSHNGLVEQGLNIYESMTKDFGIAP 597
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQD 129
E +ACV +DL + GR+E ++++ D
Sbjct: 598 DLEHHACV----VDLLSRAGRVEEAYNVYKKKFPD 628
>gi|357464861|ref|XP_003602712.1| hypothetical protein MTR_3g098230 [Medicago truncatula]
gi|355491760|gb|AES72963.1| hypothetical protein MTR_3g098230 [Medicago truncatula]
Length = 867
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 103/407 (25%), Positives = 185/407 (45%), Gaps = 92/407 (22%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC----------------------NWTSMMGMYN 41
G VH ++I G E+ F G+ L+ ++ +W +M+
Sbjct: 159 GKSVHGYVIKSGFEMDTFAGNALVSMYAKCGLVACDAYAVFDSIIHKDVVSWNAMIAGLA 218
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD---YRVGKDVYDYMISIKFEG 98
G +E +LF LM+ V+P++ + C+ + +R G+ ++ Y++
Sbjct: 219 ENGLLKEAFSLFSLMMKGSVKPNYATVANILPVCASFDENIAHRCGRQIHSYVLQ----- 273
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
+ E+ D V N+L+ FY K K + F +
Sbjct: 274 ------------------------WPELSADVSVCNALLSFYLKVGRTKEAESLFWAMDA 309
Query: 159 KDLVSWNAMLAGYALGGFREEVTNL-----LDEMEMIQTDMQPNTISLSGVLAACAQVKG 213
+DLVSWN ++AGYAL G E + +L L +EM+ D ++++ +L ACAQ+
Sbjct: 310 RDLVSWNTIIAGYALNG--EWLKSLHVFGNLVSLEMLLLD----SVTMVSILPACAQLDN 363
Query: 214 VKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ GK +H Y+LRH + CG++ + F+ +S +D++ WNSI+
Sbjct: 364 LQAGKQVHAYILRHPFLFEDTSAGNALVSFYAKCGYIEEAYHTFSMISRKDLISWNSILD 423
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-------GLGTGSF- 313
AF L LL ++ +++P++VTI++++ C L + + + +GS
Sbjct: 424 AFGEKRHHSRFLSLLHVMLKLDIRPDSVTILTIIHFCASLLRVKKVKEIHGYSIRSGSLL 483
Query: 314 ------VWNALIDMYGRCGAIQKSRKIFV-LMPHKNLVSWNVMISVY 353
V NA++D Y +CG I+ + K+F L +NLV+ N +IS Y
Sbjct: 484 CATAPTVGNAILDAYSKCGNIEYANKMFQNLSEKRNLVTCNSLISGY 530
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/353 (25%), Positives = 162/353 (45%), Gaps = 61/353 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFY--LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
W S + V + E ++ F+ L +PDH V + K+CS L +GK ++
Sbjct: 2 TWASTIRSLCVDSRHNEALSFFHHCLKDSAAFKPDHEVLAAILKSCSALLASNLGKCLHS 61
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
Y++ +G+ + C + + +L++ YAKC L
Sbjct: 62 YVVK---QGH-----------VSC----------------HVTSKALLNMYAKCGMLDDC 91
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFRE-EVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
H F + + D V WN +L+GY+ G + +V + M ++ P++++++ VL C
Sbjct: 92 HKLFDQFGRCDPVIWNIVLSGYSRSGKNDADVMKVFRAMHS-SGEVMPSSVTIATVLPVC 150
Query: 209 AQVKGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSC-SVFNQLSTRDVVVW 256
A+ + GK++HGYV++ + T CG V C +VF+ + +DVV W
Sbjct: 151 ARSGNLNGGKSVHGYVIKSGFEMDTFAGNALVSMYAKCGLVACDAYAVFDSIIHKDVVSW 210
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA---ALPQGLGTGSF 313
N++I+ +G + +A L ++ +VKPN T+ ++LP C A G S+
Sbjct: 211 NAMIAGLAENGLLKEAFSLFSLMMKGSVKPNYATVANILPVCASFDENIAHRCGRQIHSY 270
Query: 314 V--W----------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V W NAL+ Y + G +++ +F M ++LVSWN +I+ Y
Sbjct: 271 VLQWPELSADVSVCNALLSFYLKVGRTKEAESLFWAMDARDLVSWNTIIAGYA 323
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 89/353 (25%), Positives = 159/353 (45%), Gaps = 63/353 (17%)
Query: 33 WTSMMGMYNVLGYYE-EIVNLFYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
W ++ Y+ G + +++ +F M G V P V C+ + GK V+ Y
Sbjct: 106 WNIVLSGYSRSGKNDADVMKVFRAMHSSGEVMPSSVTIATVLPVCARSGNLNGGKSVHGY 165
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKV-S 149
+I FE D N+L+ YAKC + +
Sbjct: 166 VIKSGFE------------------------------MDTFAGNALVSMYAKCGLVACDA 195
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
+ F I KD+VSWNAM+AG A G +E +L M ++ ++PN +++ +L CA
Sbjct: 196 YAVFDSIIHKDVVSWNAMIAGLAENGLLKEAFSLFSLM--MKGSVKPNYATVANILPVCA 253
Query: 210 QVK---GVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVV 254
+ G+ IH YVL+ + G + S+F + RD+V
Sbjct: 254 SFDENIAHRCGRQIHSYVLQWPELSADVSVCNALLSFYLKVGRTKEAESLFWAMDARDLV 313
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVLPACLKLAALPQGLGTGSF 313
WN+II+ + +G+ + +L + +++ + + ++VT+VS+LPAC +L L G ++
Sbjct: 314 SWNTIIAGYALNGEWLKSLHVFGNLVSLEMLLLDSVTMVSILPACAQLDNLQAGKQVHAY 373
Query: 314 VW------------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ NAL+ Y +CG I+++ F ++ K+L+SWN ++ +G
Sbjct: 374 ILRHPFLFEDTSAGNALVSFYAKCGYIEEAYHTFSMISRKDLISWNSILDAFG 426
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 137/294 (46%), Gaps = 21/294 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ + ++ ++L ++M+ +RPD + C+ L + K+++ Y
Sbjct: 417 SWNSILDAFGEKRHHSRFLSLLHVMLKLDIRPDSVTILTIIHFCASLLRVKKVKEIHGY- 475
Query: 92 ISIKFEGNACVKRP-----LLDLFIKCGRMEITSGLFEEMDQ--DFLVNNSLIDFYAKCR 144
SI+ C P +LD + KCG +E + +F+ + + + + NSLI Y
Sbjct: 476 -SIRSGSLLCATAPTVGNAILDAYSKCGNIEYANKMFQNLSEKRNLVTCNSLISGYVGLG 534
Query: 145 YLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGV 204
++ FS + + DL +WN M+ YA E+ L +++ M+P+ +++ +
Sbjct: 535 SHYDANMIFSGMSETDLTTWNLMVRVYAENDCPEQALELF--LKLQTQGMKPDVVTIMSL 592
Query: 205 LAACAQVKGVKLGKAIHGYVLR---HHIHLS-------TACGFVICSCSVFNQLSTRDVV 254
+ C Q+ V L + HGY++R +HL CG + + +F +D+V
Sbjct: 593 IPVCTQMASVHLLRQCHGYIIRSSFEDLHLKGTLLDAYAKCGIIGYAYKIFQSSVDKDLV 652
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
++ ++I + G AL+ ++ +KP+ V S+L AC + +GL
Sbjct: 653 MFTAMIGGYAMHGMSEKALETFSHMLNMGIKPDHVIFTSILSACSHAGRIAEGL 706
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 96/380 (25%), Positives = 168/380 (44%), Gaps = 88/380 (23%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W +++ Y + G + + +++F ++ + + D + AC++L + + GK V+ Y
Sbjct: 314 SWNTIIAGYALNGEWLKSLHVFGNLVSLEMLLLDSVTMVSILPACAQLDNLQAGKQVHAY 373
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
++ F LFE D N+L+ FYAKC Y++ ++
Sbjct: 374 ILRHPF-------------------------LFE----DTSAGNALVSFYAKCGYIEEAY 404
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
FS I +KDL+SWN++L + +LL M ++ D++P+++++ ++ CA
Sbjct: 405 HTFSMISRKDLISWNSILDAFGEKRHHSRFLSLLHVM--LKLDIRPDSVTILTIIHFCAS 462
Query: 211 VKGVKLGKAIHGYVLRHH--------------IHLSTACGFVICSCSVFNQLST-RDVVV 255
+ VK K IHGY +R + + CG + + +F LS R++V
Sbjct: 463 LLRVKKVKEIHGYSIRSGSLLCATAPTVGNAILDAYSKCGNIEYANKMFQNLSEKRNLVT 522
Query: 256 WNSIISAFVRSGQVVDA-------------------------------LDLLRDVIVANV 284
NS+IS +V G DA L+L + +
Sbjct: 523 CNSLISGYVGLGSHYDANMIFSGMSETDLTTWNLMVRVYAENDCPEQALELFLKLQTQGM 582
Query: 285 KPNTVTIVSVLPACLKLAA---LPQGLG---TGSF----VWNALIDMYGRCGAIQKSRKI 334
KP+ VTI+S++P C ++A+ L Q G SF + L+D Y +CG I + KI
Sbjct: 583 KPDVVTIMSLIPVCTQMASVHLLRQCHGYIIRSSFEDLHLKGTLLDAYAKCGIIGYAYKI 642
Query: 335 FVLMPHKNLVSWNVMISVYG 354
F K+LV + MI Y
Sbjct: 643 FQSSVDKDLVMFTAMIGGYA 662
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 102/215 (47%), Gaps = 25/215 (11%)
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
++W + + + E + +P+ L+ +L +C+ + LGK +H
Sbjct: 1 MTWASTIRSLCVDSRHNEALSFFHHCLKDSAAFKPDHEVLAAILKSCSALLASNLGKCLH 60
Query: 222 GYVLRH-HI--HLSTA--------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV- 269
YV++ H+ H+++ CG + +F+Q D V+WN ++S + RSG+
Sbjct: 61 SYVVKQGHVSCHVTSKALLNMYAKCGMLDDCHKLFDQFGRCDPVIWNIVLSGYSRSGKND 120
Query: 270 VDALDLLRDVIVA-NVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWNA 317
D + + R + + V P++VTI +VLP C + L G +F NA
Sbjct: 121 ADVMKVFRAMHSSGEVMPSSVTIATVLPVCARSGNLNGGKSVHGYVIKSGFEMDTFAGNA 180
Query: 318 LIDMYGRCGAIQ-KSRKIFVLMPHKNLVSWNVMIS 351
L+ MY +CG + + +F + HK++VSWN MI+
Sbjct: 181 LVSMYAKCGLVACDAYAVFDSIIHKDVVSWNAMIA 215
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 81/197 (41%), Gaps = 33/197 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W M+ +Y E+ + LF + +G++PD + C+++ + + + Y+
Sbjct: 553 TWNLMVRVYAENDCPEQALELFLKLQTQGMKPDVVTIMSLIPVCTQMASVHLLRQCHGYI 612
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I FE DL +K +L+D YAKC + ++
Sbjct: 613 IRSSFE----------DLHLK---------------------GTLLDAYAKCGIIGYAYK 641
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F KDLV + AM+ GYA+ G E+ M+ ++P+ + + +L+AC+
Sbjct: 642 IFQSSVDKDLVMFTAMIGGYAMHGMSEKALETFS--HMLNMGIKPDHVIFTSILSACSHA 699
Query: 212 KGVKLGKAIHGYVLRHH 228
+ G I + + H
Sbjct: 700 GRIAEGLKIFDSIEKIH 716
Score = 40.8 bits (94), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
+T+M+G Y + G E+ + F M++ G++PDH + + ACS G ++D +
Sbjct: 654 FTAMIGGYAMHGMSEKALETFSHMLNMGIKPDHVIFTSILSACSHAGRIAEGLKIFDSIE 713
Query: 93 SI-----KFEGNACVKRPLLDLFIKCGRME 117
I E ACV +DL + G +
Sbjct: 714 KIHGMKPTIEQFACV----VDLLARGGHVS 739
>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Glycine max]
Length = 975
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 136/249 (54%), Gaps = 24/249 (9%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
+D LV N+ + YAKC L + F ++ K + SWNA++ +A GF + +L +
Sbjct: 434 KDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLF--L 491
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICS----CS 243
M+ + M P+ ++ +L ACA++K ++ GK IHG++LR+ + L G + S CS
Sbjct: 492 VMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCS 551
Query: 244 -------VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296
+F+++ + +V WN +I+ F ++ +ALD R ++ +KP + + VL
Sbjct: 552 SMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLG 611
Query: 297 ACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
AC +++AL G L +FV ALIDMY +CG +++S+ IF + K+
Sbjct: 612 ACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAV 671
Query: 346 WNVMISVYG 354
WNV+I+ YG
Sbjct: 672 WNVIIAGYG 680
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 163/354 (46%), Gaps = 64/354 (18%)
Query: 9 AHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVC 68
A + CG+E + +W +++G + G+ + ++LF +M+D G+ PD F
Sbjct: 455 AERVFCGMEG---------KTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTI 505
Query: 69 PKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ 128
+ AC+ LK R GK+++ +M+ E + + L+ L+I+C M + +F++M+
Sbjct: 506 GSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKME- 564
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
K LV WN M+ G++ E + +
Sbjct: 565 -----------------------------NKSLVCWNVMITGFSQNELPCEALDTF--RQ 593
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGF 237
M+ ++P I+++GVL AC+QV ++LGK +H + L+ H I + CG
Sbjct: 594 MLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGC 653
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ S ++F++++ +D VWN II+ + G + A++L + +P++ T + VL A
Sbjct: 654 MEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIA 713
Query: 298 CLKLAALPQGLGTGSFVWN------------ALIDMYGRCGAIQKSRKIFVLMP 339
C + +GL + N ++DM GR G + ++ K+ MP
Sbjct: 714 CNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMP 767
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 105/383 (27%), Positives = 175/383 (45%), Gaps = 45/383 (11%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKG 60
+ELG VHA + G AF+G+ L+ MY G+ E V +F M ++
Sbjct: 211 VELGEAVHALALKAGGFSDAFVGNALI----------AMYGKCGFVESAVKVFETMRNRN 260
Query: 61 VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM-EIT 119
+ V ACSE + V+ ++ + EG ++ + C + E+
Sbjct: 261 L----VSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVR 316
Query: 120 SGLFEE-------MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYA 172
G+ + ++ VNNSL+D Y+KC YL + F K++VSWN ++ GY+
Sbjct: 317 MGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYS 376
Query: 173 LGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH----- 227
G V LL EM+ + ++ N +++ VL AC+ + K IHGY RH
Sbjct: 377 KEGDFRGVFELLQEMQR-EEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKD 435
Query: 228 ------HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281
+ C + C+ VF + + V WN++I A ++G +LDL ++
Sbjct: 436 ELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMD 495
Query: 282 ANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQK 330
+ + P+ TI S+L AC +L L GL F+ +L+ +Y +C ++
Sbjct: 496 SGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLL 555
Query: 331 SRKIFVLMPHKNLVSWNVMISVY 353
+ IF M +K+LV WNVMI+ +
Sbjct: 556 GKLIFDKMENKSLVCWNVMITGF 578
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 128/254 (50%), Gaps = 26/254 (10%)
Query: 125 EMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLL 184
++ D +++ +I Y+ C S F K+KDL +NA+L+GY+ + +L
Sbjct: 123 KLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLF 182
Query: 185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLST 233
E+ + TD+ P+ +L V ACA V V+LG+A+H L+ I +
Sbjct: 183 LEL-LSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYG 241
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK---PNTVT 290
CGFV + VF + R++V WNS++ A +G + + + ++++ + P+ T
Sbjct: 242 KCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVAT 301
Query: 291 IVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+V+V+PAC + A G+ V N+L+DMY +CG + ++R +F +
Sbjct: 302 MVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNG 361
Query: 340 HKNLVSWNVMISVY 353
KN+VSWN +I Y
Sbjct: 362 GKNVVSWNTIIWGY 375
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 84/346 (24%), Positives = 154/346 (44%), Gaps = 55/346 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFY-LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+ +++ Y+ + + ++LF L+ + PD+F P V KAC+ + D +G+ V+
Sbjct: 162 YNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALA 221
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ +A V L+ ++ KCG +E +FE M
Sbjct: 222 LKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETM------------------------- 256
Query: 152 KFSKIKQKDLVSWNA-MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+ ++LVSWN+ M A GGF E + + + P+ ++ V+ ACA
Sbjct: 257 -----RNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAA 311
Query: 211 VKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
V V++G +HG + I + + CG++ + ++F+ ++VV WN+I
Sbjct: 312 VGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTI 371
Query: 260 ISAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPAC------LKLA-----ALPQG 307
I + + G +LL+++ V+ N VT+++VLPAC L L A G
Sbjct: 372 IWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHG 431
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V NA + Y +C ++ + ++F M K + SWN +I +
Sbjct: 432 FLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAH 477
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 104/201 (51%), Gaps = 32/201 (15%)
Query: 182 NLLDEMEMIQTDMQPNTISLSGV--------LAACAQVKGVKLGKAIHGYV-----LRHH 228
NL D + ++ + Q T+S S + L AC K + +G+ +H V LR+
Sbjct: 68 NLNDALNLLHSHAQNGTVSSSDISKEAIGILLRACGHHKNIHVGRKVHALVSASHKLRND 127
Query: 229 IHLST-------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281
+ LST ACG S VF+ +D+ ++N+++S + R+ DA+ L +++
Sbjct: 128 VVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLS 187
Query: 282 A-NVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQ 329
A ++ P+ T+ V AC +A AL G + +FV NALI MYG+CG ++
Sbjct: 188 ATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVE 247
Query: 330 KSRKIFVLMPHKNLVSWNVMI 350
+ K+F M ++NLVSWN ++
Sbjct: 248 SAVKVFETMRNRNLVSWNSVM 268
>gi|356497951|ref|XP_003517819.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial-like [Glycine max]
Length = 828
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 164/345 (47%), Gaps = 56/345 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WTSM+ N G +EE ++ F M + V + V C+ L + GK V+ +++
Sbjct: 272 WTSMISSCNQNGCFEEAIDAFKKMQESEVEVNAVTMISVLCCCARLGWLKEGKSVHCFIL 331
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ +G D + +L+DFYA C K+S C+
Sbjct: 332 RREMDG-----------------------------ADLDLGPALMDFYAAC--WKISSCE 360
Query: 153 --FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
I +VSWN +++ YA G EE L + M++ + P++ SL+ ++ACA
Sbjct: 361 KLLCLIGNSSVVSWNTLISIYAREGLNEEAMVLF--VCMLEKGLMPDSFSLASSISACAG 418
Query: 211 VKGVKLGKAIHGYVLRHH----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
V+ G+ IHG+V + + + + CGFV + ++F+++ + +V WN +I
Sbjct: 419 ASSVRFGQQIHGHVTKRGFADEFVQNSLMDMYSKCGFVDLAYTIFDKIWEKSIVTWNCMI 478
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
F ++G V+AL L ++ + N VT +S + AC L +G +
Sbjct: 479 CGFSQNGISVEALKLFDEMCFNCMDINEVTFLSAIQACSNSGYLLKGKWIHHKLVVSGVQ 538
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
++ AL+DMY +CG ++ ++ +F MP K++VSW+ MI+ YG
Sbjct: 539 KDLYIDTALVDMYAKCGDLKTAQGVFNSMPEKSVVSWSAMIAAYG 583
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 147/303 (48%), Gaps = 49/303 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ +Y G EE + LF M++KG+ PD F AC+ R G+ ++ ++
Sbjct: 373 SWNTLISIYAREGLNEEAMVLFVCMLEKGLMPDSFSLASSISACAGASSVRFGQQIHGHV 432
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
KR D F++ NSL+D Y+KC ++ +++
Sbjct: 433 ----------TKRGFADEFVQ---------------------NSLMDMYSKCGFVDLAYT 461
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F KI +K +V+WN M+ G++ G E L DEM D+ N ++ + AC+
Sbjct: 462 IFDKIWEKSIVTWNCMICGFSQNGISVEALKLFDEMCFNCMDI--NEVTFLSAIQACSNS 519
Query: 212 KGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ GK IH + ++ +++ TA CG + + VFN + + VV W+++I
Sbjct: 520 GYLLKGKWIHHKLVVSGVQKDLYIDTALVDMYAKCGDLKTAQGVFNSMPEKSVVSWSAMI 579
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALID 320
+A+ GQ+ A L ++ +++KPN VT +++L AC ++ + G F +N++ D
Sbjct: 580 AAYGIHGQITAATTLFTKMVESHIKPNEVTFMNILSACRHAGSVEE----GKFYFNSMRD 635
Query: 321 MYG 323
YG
Sbjct: 636 -YG 637
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 101/396 (25%), Positives = 178/396 (44%), Gaps = 79/396 (19%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMG--------------MYNVL-------G 44
Q+HAHL+V G+ ++LLE + S+ M+ VL
Sbjct: 19 QLHAHLVVTGLHSDPLASTKLLESYARMGSLHSSRLVFETHPSPDSFMFGVLIKCYLWHH 78
Query: 45 YYEEIVNLFYLMIDKGVRPDH---FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
++++V+L++ I KG R F+ P V KA S + VG+ V+
Sbjct: 79 LFDQVVSLYHHHIQKGSRLTQNCTFLYPSVIKAISVVGGLVVGRKVH------------- 125
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
GR+ + +GL D ++ SL+ Y + L + F +I+ +DL
Sbjct: 126 ------------GRI-VKTGL----GTDHVIGTSLLGMYGELGCLSDARKVFDEIRVRDL 168
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSW++++A Y G E +L M+ + P+++++ V AC +V ++L K++H
Sbjct: 169 VSWSSVVACYVENGRPREGLEML--RWMVSEGVGPDSVTMLSVAEACGKVGCLRLAKSVH 226
Query: 222 GYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
GYV+R I + C ++ + +F +S W S+IS+ ++G
Sbjct: 227 GYVIRKEMAGDASLRNSLIVMYGQCSYLRGAKGMFESVSDPSTACWTSMISSCNQNGCFE 286
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN------------AL 318
+A+D + + + V+ N VT++SVL C +L L +G F+ AL
Sbjct: 287 EAIDAFKKMQESEVEVNAVTMISVLCCCARLGWLKEGKSVHCFILRREMDGADLDLGPAL 346
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+D Y C I K+ L+ + ++VSWN +IS+Y
Sbjct: 347 MDFYAACWKISSCEKLLCLIGNSSVVSWNTLISIYA 382
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 91/392 (23%), Positives = 174/392 (44%), Gaps = 77/392 (19%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLL----EVFC-----------------NWTSMMGMYN 41
+G +VH ++ G+ +G+ LL E+ C +W+S++ Y
Sbjct: 120 VGRKVHGRIVKTGLGTDHVIGTSLLGMYGELGCLSDARKVFDEIRVRDLVSWSSVVACYV 179
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G E + + M+ +GV PD V +AC ++ R+ K V+ Y+I + G+A
Sbjct: 180 ENGRPREGLEMLRWMVSEGVGPDSVTMLSVAEACGKVGCLRLAKSVHGYVIRKEMAGDAS 239
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
++ L+ ++ +C + G+FE S+ D C
Sbjct: 240 LRNSLIVMYGQCSYLRGAKGMFE----------SVSDPSTAC------------------ 271
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
W +M++ G EE + +M+ +++++ N +++ VL CA++ +K GK++H
Sbjct: 272 --WTSMISSCNQNGCFEEAIDAFKKMQ--ESEVEVNAVTMISVLCCCARLGWLKEGKSVH 327
Query: 222 GYVLRHH------------IHLSTACGFVICSCS-VFNQLSTRDVVVWNSIISAFVRSGQ 268
++LR + AC + I SC + + VV WN++IS + R G
Sbjct: 328 CFILRREMDGADLDLGPALMDFYAAC-WKISSCEKLLCLIGNSSVVSWNTLISIYAREGL 386
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG----------TGSFVWNAL 318
+A+ L ++ + P++ ++ S + AC +++ G FV N+L
Sbjct: 387 NEEAMVLFVCMLEKGLMPDSFSLASSISACAGASSVRFGQQIHGHVTKRGFADEFVQNSL 446
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+DMY +CG + + IF + K++V+WN MI
Sbjct: 447 MDMYSKCGFVDLAYTIFDKIWEKSIVTWNCMI 478
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 124/273 (45%), Gaps = 28/273 (10%)
Query: 107 LDLFIKCGRMEITSGLFEEM-----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ LF C + S L + D L + L++ YA+ L S F D
Sbjct: 5 MPLFRSCSTLRSLSQLHAHLVVTGLHSDPLASTKLLESYARMGSLHSSRLVFETHPSPDS 64
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN-TISLSGVLAACAQVKGVKLGKAI 220
+ ++ Y ++V +L + + N T V+ A + V G+ +G+ +
Sbjct: 65 FMFGVLIKCYLWHHLFDQVVSLYHHHIQKGSRLTQNCTFLYPSVIKAISVVGGLVVGRKV 124
Query: 221 HGYVLR------HHIHLSTACGFVICSC-----SVFNQLSTRDVVVWNSIISAFVRSGQV 269
HG +++ H I S + C VF+++ RD+V W+S+++ +V +G+
Sbjct: 125 HGRIVKTGLGTDHVIGTSLLGMYGELGCLSDARKVFDEIRVRDLVSWSSVVACYVENGRP 184
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPA-----CLKLAALPQG------LGTGSFVWNAL 318
+ L++LR ++ V P++VT++SV A CL+LA G + + + N+L
Sbjct: 185 REGLEMLRWMVSEGVGPDSVTMLSVAEACGKVGCLRLAKSVHGYVIRKEMAGDASLRNSL 244
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
I MYG+C ++ ++ +F + + W MIS
Sbjct: 245 IVMYGQCSYLRGAKGMFESVSDPSTACWTSMIS 277
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/226 (19%), Positives = 84/226 (37%), Gaps = 30/226 (13%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G +H L+V GV+ ++ + L++++ +W++M+ Y +
Sbjct: 525 GKWIHHKLVVSGVQKDLYIDTALVDMYAKCGDLKTAQGVFNSMPEKSVVSWSAMIAAYGI 584
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G LF M++ ++P+ + AC GK ++ M NA
Sbjct: 585 HGQITAATTLFTKMVESHIKPNEVTFMNILSACRHAGSVEEGKFYFNSMRDYGIVPNAEH 644
Query: 103 KRPLLDLFIKCGRM----EITSGLFEEMDQDF---LVNNSLIDFYAKCRYLKVSHCKFSK 155
++DL + G + EI + +D L+N I + + + H + +
Sbjct: 645 FASIVDLLSRAGDIDGAYEIIKSTCQHIDASIWGALLNGCRI--HGRMDLIHNIHKELRE 702
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISL 201
I+ D + + YA GG E + ME + P S+
Sbjct: 703 IRTNDTGYYTLLSNIYAEGGNWYESRKVRSRMEGMGLKKVPGYSSI 748
>gi|297604953|ref|NP_001056393.2| Os05g0574800 [Oryza sativa Japonica Group]
gi|255676596|dbj|BAF18307.2| Os05g0574800 [Oryza sativa Japonica Group]
Length = 857
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 170/344 (49%), Gaps = 54/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W M+G Y +G+ EE ++L+Y M+ G+RPD + P V + C + D+R+G++V+ ++
Sbjct: 164 SWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHV 223
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ G +E+D V N+L+ YAKC + +
Sbjct: 224 LRF--------------------------GFGDEVD----VLNALVTMYAKCGDIVAARK 253
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + D +SWNAM+AG+ E L + M++ ++QPN ++++ V A +
Sbjct: 254 VFDGMAVTDCISWNAMIAGHFENHECEAGLELF--LTMLENEVQPNLMTITSVTVASGML 311
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
V K +HG+ ++ I + T+ G + + +F+++ T+D + W ++I
Sbjct: 312 SEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMI 371
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV---------LPACLKLAALPQGLGTG 311
S + ++G AL++ + + NV P+ VTI S L +KL L Q G
Sbjct: 372 SGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFI 431
Query: 312 SF--VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ V NAL++MY + I K+ ++F M K++VSW+ MI+ +
Sbjct: 432 RYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGF 475
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 107/223 (47%), Gaps = 24/223 (10%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+K+ ++D+ SWN M+ GY GF EE +L M+ M+P+ + VL C +
Sbjct: 154 FAKMPERDVFSWNVMVGGYGKVGFLEEALDLY--YRMLWAGMRPDVYTFPCVLRTCGGIP 211
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++G+ +H +VLR + + CG ++ + VF+ ++ D + WN++I+
Sbjct: 212 DWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIA 271
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGT 310
+ + L+L ++ V+PN +TI SV A L+ A+ +G
Sbjct: 272 GHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAI 331
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
N+LI MY G + + KIF M K+ +SW MIS Y
Sbjct: 332 DVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGY 374
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 151/344 (43%), Gaps = 57/344 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ Y G+ ++ + ++ LM V PD D
Sbjct: 366 SWTAMISGYEKNGFPDKALEVYALMELHNVSPD------------------------DVT 401
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I+ AC+ R LD+ IK + G + +V N+L++ YAK +++ +
Sbjct: 402 IASALAACACLGR--LDVGIKLHELAQNKGFIRYV----VVANALLEMYAKSKHIDKAIE 455
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +KD+VSW++M+AG+ F L + ++PN+++ L+ACA
Sbjct: 456 VFKFMAEKDVVSWSSMIAGFC---FNHRSFEALYYFRYMLGHVKPNSVTFIAALSACAAT 512
Query: 212 KGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ GK IH YVLR I L CG + + F+ S +DVV WN ++
Sbjct: 513 GALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIML 572
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----LGTGSFV- 314
S FV G AL L ++ P+ VT V++L AC + + QG + T F
Sbjct: 573 SGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSI 632
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMIS 351
+ ++D+ R G + ++ + MP K + W +++
Sbjct: 633 VPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLN 676
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 25/164 (15%)
Query: 205 LAACAQVK------GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ ACA+ G++LG A+ ++R G + + VF ++ RDV WN
Sbjct: 116 MRACARADAEHPSFGLRLGNAMLSMLVRF--------GEIWHAWRVFAKMPERDVFSWNV 167
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQG 307
++ + + G + +ALDL ++ A ++P+ T VL C + L G
Sbjct: 168 MVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFG 227
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
G V NAL+ MY +CG I +RK+F M + +SWN MI+
Sbjct: 228 FGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIA 271
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 14/109 (12%)
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGT------ 310
++ + A GQ+ AL LL + P+ V++ C A+ G+
Sbjct: 68 SAALRALCSHGQLAQALWLLES---SPEPPDEGAYVALFRLCEWRRAVDAGMRACARADA 124
Query: 311 -----GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G + NA++ M R G I + ++F MP +++ SWNVM+ YG
Sbjct: 125 EHPSFGLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYG 173
>gi|449444600|ref|XP_004140062.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17210-like [Cucumis sativus]
Length = 747
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 163/345 (47%), Gaps = 56/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W+ M+G + +G E+ +F M+ + G+ PD V KAC+ LKD +G V+
Sbjct: 216 SWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTNLKDISLGTMVHGL 275
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+I F ++ D V NSLID Y+KC + +
Sbjct: 276 VI------------------------------FRGLEDDLFVGNSLIDMYSKCFNVHSAF 305
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F +I +K+++SWN ML+ Y L E LL M++ + + ++L+ VL
Sbjct: 306 KAFKEIPEKNIISWNLMLSAYILNESHLEALALLG--TMVREGAEKDEVTLANVLQIAKH 363
Query: 211 VKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+++HG ++R I C V + VF+ ++ +DVV W+++
Sbjct: 364 FLDSLKCRSVHGVIIRKGYESNELLLNSVIDAYAKCNLVELARMVFDGMNKKDVVAWSTM 423
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GL 308
I+ F R+G+ +A+ + + + V PN V+I++++ AC A L Q GL
Sbjct: 424 IAGFARNGKPDEAISVFKQ-MNEEVIPNNVSIMNLMEACAVSAELRQSKWAHGIAVRRGL 482
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ + ++IDMY +CG I+ S + F +P KN+V W+ MIS +
Sbjct: 483 ASEVDIGTSIIDMYSKCGDIEASIRAFNQIPQKNVVCWSAMISAF 527
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 90/385 (23%), Positives = 163/385 (42%), Gaps = 77/385 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ LG VH +I G+E F+G+ L++++ +W M+
Sbjct: 266 ISLGTMVHGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWNLMLSA 325
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y + + E + L M+ +G D V + D + V+ +I +E N
Sbjct: 326 YILNESHLEALALLGTMVREGAEKDEVTLANVLQIAKHFLDSLKCRSVHGVIIRKGYESN 385
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
L+ NS+ID YAKC ++++ F + +K
Sbjct: 386 E------------------------------LLLNSVIDAYAKCNLVELARMVFDGMNKK 415
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+V+W+ M+AG+A G +E ++ +M ++ PN +S+ ++ ACA ++ K
Sbjct: 416 DVVAWSTMIAGFARNGKPDEAISVFKQM---NEEVIPNNVSIMNLMEACAVSAELRQSKW 472
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
HG +R I + + CG + S FNQ+ ++VV W+++ISAF +G
Sbjct: 473 AHGIAVRRGLASEVDIGTSIIDMYSKCGDIEASIRAFNQIPQKNVVCWSAMISAFRINGL 532
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG------------TGSFVWN 316
+AL L + KPN VT +S+L AC + +GL G ++
Sbjct: 533 AHEALMLFEKIKQNGTKPNAVTALSLLSACSHGGLMEEGLSFFTSMVQKHGIEPGLEHYS 592
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHK 341
++DM R G ++ ++ +P +
Sbjct: 593 CIVDMLSRAGKFNEALELIEKLPKE 617
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 100/334 (29%), Positives = 149/334 (44%), Gaps = 57/334 (17%)
Query: 44 GYYEEIVNLFYLMIDKGVR-PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G ++E + L++ + G + D +V P + KACS + +G ++ C+
Sbjct: 26 GNWQEALQLYHEIRISGAQLSDTWVLPSILKACSN-TSFNLGTAMH-----------GCL 73
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
IK G TS + NS IDFY K L + F K KD V
Sbjct: 74 --------IKQGCQSSTS-----------IANSTIDFYMKYGDLDSAQRAFDSTKNKDSV 114
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SWN M+ G G + L ++ QPN SL V+ A ++K G A HG
Sbjct: 115 SWNVMVHGNFSNG--SIMAGLCWFIKGRFAHFQPNISSLLLVIQAFRELKIYSQGFAFHG 172
Query: 223 YVLRHHIH--LSTACGFVICSCSV--------FNQLSTR-DVVVWNSIISAFVRSGQVVD 271
Y+ R LS + V F ++S R DVV W+ +I FV+ G+
Sbjct: 173 YIFRSGFSAILSVQNSLLSLYAEVHMYFAHKLFGEMSVRNDVVSWSVMIGGFVQIGEDEQ 232
Query: 272 ALDLLRDVIV-ANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNALI 319
+ R+++ A + P+ VT+VSVL AC L + +GL FV N+LI
Sbjct: 233 GFLMFRNMVTEAGIPPDGVTVVSVLKACTNLKDISLGTMVHGLVIFRGLEDDLFVGNSLI 292
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
DMY +C + + K F +P KN++SWN+M+S Y
Sbjct: 293 DMYSKCFNVHSAFKAFKEIPEKNIISWNLMLSAY 326
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 266 SGQVVDALDLLRDVIVANVK-PNTVTIVSVLPACLKLA----------ALPQGLGTGSFV 314
SG +AL L ++ ++ + +T + S+L AC + + QG + + +
Sbjct: 25 SGNWQEALQLYHEIRISGAQLSDTWVLPSILKACSNTSFNLGTAMHGCLIKQGCQSSTSI 84
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
N+ ID Y + G + +++ F +K+ VSWNVM+
Sbjct: 85 ANSTIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMV 120
>gi|347954462|gb|AEP33731.1| chlororespiratory reduction 21, partial [Crucihimalaya wallichii]
Length = 830
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 167/345 (48%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++G+ +G E + F M++ + PD+FV P V KAC L+ R G+ V+ Y+
Sbjct: 140 SWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGRGVHGYV 199
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ E CV V +SL D Y KC L +
Sbjct: 200 VKAGLED--CV----------------------------FVASSLADMYGKCGVLDDARK 229
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I ++++V+WNA+L GY G EE LL +M + ++P+ +++S L+A A +
Sbjct: 230 VFDEIPERNVVAWNALLVGYVQNGMNEEAIRLLSDMR--KDGVEPSRVTVSTCLSASANM 287
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICS--CSV---------FNQLSTRDVVVWNSII 260
GV GK H + + + L G + + C V F+++ +DVV WN +I
Sbjct: 288 GGVAEGKQSHAIAILNGLELDNILGTSLLNFYCKVGLIEYAEMIFDRMFDKDVVTWNLLI 347
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
S +V+ G V DA+ + + + + N+K + VT+ +++ A + L G L
Sbjct: 348 SGYVQQGLVEDAIYMCQLMRLENLKYDCVTLSTLMSAAARTKNLKFGKEVQCYCIRHSLE 407
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + + +DMY +CG+I ++K+F K+L+ WN +++ Y
Sbjct: 408 SDIVLASITMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYA 452
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 150/305 (49%), Gaps = 44/305 (14%)
Query: 77 ELKDYRVGKDVYDYMIS-IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNS 135
+ ++ R+G ++Y ++ +E + C + + +K G DF N
Sbjct: 62 DFRNLRIGPEIYGEILQGCVYERDLCTGKQIHARILKNG--------------DFYAGNE 107
Query: 136 LID-----FYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
I+ FYAKC L+++ FSK++ +++ SW A++ G E L+ +EM+
Sbjct: 108 YIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLCEGA--LMGFVEML 165
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVI 239
+ ++ P+ + V AC ++ + G+ +HGYV++ + + CG +
Sbjct: 166 ENEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKAGLEDCVFVASSLADMYGKCGVLD 225
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ VF+++ R+VV WN+++ +V++G +A+ LL D+ V+P+ VT+ + L A
Sbjct: 226 DARKVFDEIPERNVVAWNALLVGYVQNGMNEEAIRLLSDMRKDGVEPSRVTVSTCLSASA 285
Query: 300 KLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
+ A+ GL + + +L++ Y + G I+ + IF M K++V+WN+
Sbjct: 286 NMGGVAEGKQSHAIAILNGLELDNILGTSLLNFYCKVGLIEYAEMIFDRMFDKDVVTWNL 345
Query: 349 MISVY 353
+IS Y
Sbjct: 346 LISGY 350
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 82/385 (21%), Positives = 162/385 (42%), Gaps = 92/385 (23%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYN 41
G VH +++ G+E C F+ S L +++ W +++ Y
Sbjct: 191 FGRGVHGYVVKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALLVGYV 250
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G EE + L M GV P A + + GK +
Sbjct: 251 QNGMNEEAIRLLSDMRKDGVEPSRVTVSTCLSASANMGGVAEGKQSH------------- 297
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ I +GL + D ++ SL++FY K ++ + F ++ KD+
Sbjct: 298 -------------AIAILNGL----ELDNILGTSLLNFYCKVGLIEYAEMIFDRMFDKDV 340
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
V+WN +++GY G E+ + M + +++ + ++LS +++A A+ K +K GK +
Sbjct: 341 VTWNLLISGYVQQGLVEDAIYMCQLMRL--ENLKYDCVTLSTLMSAAARTKNLKFGKEVQ 398
Query: 222 GYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y +RH + + CG ++ + VF+ +D+++WN++++A+ SG
Sbjct: 399 CYCIRHSLESDIVLASITMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSG 458
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQK 330
+AL L ++ + +V PN +T WN +I R G + +
Sbjct: 459 EALRLFYEMQLESVPPNVIT------------------------WNLIILSLLRNGEVNE 494
Query: 331 SRKIFVLMPHK----NLVSWNVMIS 351
++++F+ M NL+SW M++
Sbjct: 495 AKEMFLQMQSSGISPNLISWTTMMN 519
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 93/423 (21%), Positives = 178/423 (42%), Gaps = 87/423 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G Q HA I+ G+EL LG+ LL +C W ++ Y
Sbjct: 293 GKQSHAIAILNGLELDNILGTSLLNFYCKVGLIEYAEMIFDRMFDKDVVTWNLLISGYVQ 352
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G E+ + + LM + ++ D + A + K+ + GK+V Y I E + +
Sbjct: 353 QGLVEDAIYMCQLMRLENLKYDCVTLSTLMSAAARTKNLKFGKEVQCYCIRHSLESDIVL 412
Query: 103 KRPLLDLFIKCGRMEITSGLFEE-MDQDFLVNNSLIDFYAKC------------------ 143
+D++ KCG + +F+ +++D ++ N+L+ YA+
Sbjct: 413 ASITMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYEMQLESV 472
Query: 144 ---------------RYLKVSHCK--FSKIKQK----DLVSWNAMLAGYALGGFREEVTN 182
R +V+ K F +++ +L+SW M+ G G EE
Sbjct: 473 PPNVITWNLIILSLLRNGEVNEAKEMFLQMQSSGISPNLISWTTMMNGMVQNGCSEEAIL 532
Query: 183 LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST--------- 233
L +M+ + ++PN S++ L+A A + + G++IHGY++R+ H S+
Sbjct: 533 FLRKMQ--DSGLRPNAFSITVALSASANLASLHFGRSIHGYIVRNLQHSSSVSIETSLVD 590
Query: 234 ---ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
CG + + VF ++ ++N++ISA+ G V +A+ L R + KP+ +T
Sbjct: 591 MYAKCGDINKAERVFGSKLYSELPLYNAMISAYALYGNVKEAITLYRSLEDMGNKPDNIT 650
Query: 291 IVSVLPACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFVLM 338
S+L AC + + Q + + + + ++D+ G ++ K+ M
Sbjct: 651 FTSLLSACNHVGDINQAIEIFTDMVSKHGVKPCLEHYGLMVDLLASAGETDRALKLIEEM 710
Query: 339 PHK 341
P+K
Sbjct: 711 PYK 713
>gi|414887787|tpg|DAA63801.1| TPA: hypothetical protein ZEAMMB73_367984 [Zea mays]
Length = 711
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/347 (27%), Positives = 172/347 (49%), Gaps = 54/347 (15%)
Query: 30 FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
+WT+M+G G + E++ L M +G RPD + V AC ++K+ R G ++
Sbjct: 231 LASWTAMIGGAVRGGDWLEVMTLLKRMKSEGFRPDSMIFATVIPACGKVKELRTGMALHG 290
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
Y + + CV L+D++ KC R+++ + LF +D
Sbjct: 291 YAVKCGVGDDICVPNALVDMYCKCARLDMAASLFWSID---------------------- 328
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
KD+ SW+ ++AG++ +L EM+ + ++PN+ +++ +L + +
Sbjct: 329 --------HKDVFSWSTIIAGHSQNRIYNVSVSLF--TEMVASGIKPNSTTIASILPSIS 378
Query: 210 QVKGVKLGKAIHGYVLR----HHIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNS 258
+++ ++ GK IH + LR H L++A G++ + VF D+VV NS
Sbjct: 379 ELRLLRYGKEIHCFSLRNRLEHSEFLASALIDFYCRQGYIRDAQIVFEFKPKNDLVVLNS 438
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF----- 313
+I +V + AL LLR ++ ++P+ VT+VSVLP C + + L QG ++
Sbjct: 439 MIRGYVVNKDSESALRLLRALLKEGLRPDHVTVVSVLPLCNQPSRLLQGKELHAYAIRHN 498
Query: 314 ------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V NAL DMY +CG ++ + KIF+LM +N V++N +IS G
Sbjct: 499 ISSCFSVTNALTDMYCKCGCLEIANKIFLLMTERNTVTYNTLISSLG 545
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 101/394 (25%), Positives = 173/394 (43%), Gaps = 74/394 (18%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCN-----------------------WTSMMGMYNV 42
++HA L+V G L +QL+ + W +++
Sbjct: 78 RLHAALLVRGYHRSTVLAAQLVRAYARMRDGGLGHAVRVFDGMPTRNSFAWNAVIKGLVD 137
Query: 43 LGYYEEIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G + E + ++ M+ D V D F P V KAC+ L + G+ V + + + G A
Sbjct: 138 AGRFSEALRWYWDMVRDGSVVADRFTYPPVLKACAALGEVEQGRKVQENVETDIARGIA- 196
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
++F++C +L+D +AKC L + F + +DL
Sbjct: 197 ----KGNVFVQC---------------------ALVDMFAKCGCLGEARNMFESMGVRDL 231
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
SW AM+ G GG EV LL M+ +P+++ + V+ AC +VK ++ G A+H
Sbjct: 232 ASWTAMIGGAVRGGDWLEVMTLLKRMK--SEGFRPDSMIFATVIPACGKVKELRTGMALH 289
Query: 222 GYVLR----HHIHLSTACGFVICSC-------SVFNQLSTRDVVVWNSIISAFVRSGQVV 270
GY ++ I + A + C C S+F + +DV W++II+ ++
Sbjct: 290 GYAVKCGVGDDICVPNALVDMYCKCARLDMAASLFWSIDHKDVFSWSTIIAGHSQNRIYN 349
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALI 319
++ L +++ + +KPN+ TI S+LP+ +L L G L F+ +ALI
Sbjct: 350 VSVSLFTEMVASGIKPNSTTIASILPSISELRLLRYGKEIHCFSLRNRLEHSEFLASALI 409
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
D Y R G I+ ++ +F P +LV N MI Y
Sbjct: 410 DFYCRQGYIRDAQIVFEFKPKNDLVVLNSMIRGY 443
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 76/375 (20%), Positives = 160/375 (42%), Gaps = 76/375 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ G+ +H + + CGV + + L++++C +W++++
Sbjct: 282 LRTGMALHGYAVKCGVGDDICVPNALVDMYCKCARLDMAASLFWSIDHKDVFSWSTIIAG 341
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
++ Y V+LF M+ G++P+ + + SEL+ R GK+++ + + + E
Sbjct: 342 HSQNRIYNVSVSLFTEMVASGIKPNSTTIASILPSISELRLLRYGKEIHCFSLRNRLE-- 399
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+FL + +LIDFY + Y++ + F +
Sbjct: 400 ---------------------------HSEFLAS-ALIDFYCRQGYIRDAQIVFEFKPKN 431
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
DLV N+M+ GY + ++ + L +++ ++P+ +++ VL C Q + GK
Sbjct: 432 DLVVLNSMIRGYVVN--KDSESALRLLRALLKEGLRPDHVTVVSVLPLCNQPSRLLQGKE 489
Query: 220 IHGYVLRHHIH----LSTACGFVICSC-------SVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H Y +RH+I ++ A + C C +F ++ R+ V +N++IS+ + G
Sbjct: 490 LHAYAIRHNISSCFSVTNALTDMYCKCGCLEIANKIFLLMTERNTVTYNTLISSLGKHGH 549
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL------------GTGSFVWN 316
A L + V P+ VT V++L C + +GL ++
Sbjct: 550 ADQAFILFDLMKRDGVSPDKVTFVALLSCCSHGGLIDKGLCFYDSMLRDYNIPPDKEHYS 609
Query: 317 ALIDMYGRCGAIQKS 331
++D+Y R G + +
Sbjct: 610 CIVDLYSRSGKLDDA 624
>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
Length = 653
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/347 (25%), Positives = 162/347 (46%), Gaps = 56/347 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT++M + G E + LF M GV+P+ F KAC L +G+ ++D
Sbjct: 40 SWTALMCGHIQNGNPLESLLLFSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDIC 99
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F D +V NS+ID Y+KC + + C
Sbjct: 100 VKTGF------------------------------DMVNVVGNSIIDMYSKCGRINEAAC 129
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + ++L+SWNAM+AGY + GF E+ L +M+ + + + + + L AC+ +
Sbjct: 130 MFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFL--DEFTFTSTLKACSDL 187
Query: 212 KGVKLGKAIHGYVLRHH-------------IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+K G IH +++ I L CG + + VF+ + + V+ W +
Sbjct: 188 GAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTA 247
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF----- 313
+I + + G + ++++L R + ++++ + + S++ A + QG +F
Sbjct: 248 LILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVP 307
Query: 314 ------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V N+++DMY +CG I ++ ++F MP +N++SW VMI+ YG
Sbjct: 308 SGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYG 354
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 84/401 (20%), Positives = 175/401 (43%), Gaps = 83/401 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+++G Q+H + G ++ +G+ +++++ +W +M+
Sbjct: 89 LDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVMPVRNLISWNAMIAG 148
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y V G+ E+ + LF M + G D F KACS+L + G ++ ++I
Sbjct: 149 YTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQIHAFLI------- 201
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
T G ++ V +LID Y KC L ++ FS I++K
Sbjct: 202 -------------------TGGFLYSVNT--AVAGALIDLYVKCGKLFMARRVFSHIEEK 240
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMI----QTDMQPNTISLSGVLAACAQVKGVK 215
++SW A++ GYA G NL + ME+ ++ +Q + LS ++ A V+
Sbjct: 241 HVISWTALILGYAQEG------NLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQ 294
Query: 216 LGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
GK +H + ++ + + CG + + +F+++ R+V+ W +I+ +
Sbjct: 295 QGKQMHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYG 354
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV---------- 314
+ G +A+ L ++ + + +P+ VT ++VL C + +G S +
Sbjct: 355 KHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARV 414
Query: 315 --WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ ++D+ GR G +++++ + MP N+ W ++S
Sbjct: 415 EHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSA 455
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 125/249 (50%), Gaps = 26/249 (10%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D +++N LI Y KC L V+ F ++ ++++VSW A++ G+ G E L +M
Sbjct: 6 DLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMG 65
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGF 237
+ + ++PN + S L AC + G+ +G+ IH ++ I + + CG
Sbjct: 66 L--SGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGR 123
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ + +F + R+++ WN++I+ + +G AL L + + + T S L A
Sbjct: 124 INEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKA 183
Query: 298 CLKLAALPQG------LGTGSFVWN-------ALIDMYGRCGAIQKSRKIFVLMPHKNLV 344
C L A+ +G L TG F+++ ALID+Y +CG + +R++F + K+++
Sbjct: 184 CSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVI 243
Query: 345 SWNVMISVY 353
SW +I Y
Sbjct: 244 SWTALILGY 252
>gi|347954460|gb|AEP33730.1| chlororespiratory reduction 21, partial [Capsella bursa-pastoris]
Length = 820
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 166/345 (48%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++G+ +G E + F M++ + PD+FV P V+KAC L+ R G+ V+ Y+
Sbjct: 129 SWAAIIGVKCRMGLCEGALMGFVEMLENEIFPDNFVVPNVFKACGALQWSRFGRGVHGYV 188
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ E CV V +SL D Y KC L +
Sbjct: 189 LKAGLED--CV----------------------------FVASSLADMYGKCGVLDDARK 218
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I ++++V+WNA++ GY G EE LL +M + ++P +++S L+A A +
Sbjct: 219 VFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMR--KDGVEPTRVTVSTCLSASANM 276
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICS--CSV---------FNQLSTRDVVVWNSII 260
GV+ G H + + + L G + + C V F+++ +DVV WN +I
Sbjct: 277 AGVEEGTQCHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMIFDRMFEKDVVTWNLLI 336
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
S +V+ G V DA+ + + + + +K + VT+ +++ A + L G L
Sbjct: 337 SGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCXCFRHSLE 396
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + + +DMY +CG+I ++K+F K+L+ WN +++ Y
Sbjct: 397 SDIVLASTAMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYA 441
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 150/300 (50%), Gaps = 34/300 (11%)
Query: 77 ELKDYRVGKDVYDYMIS-IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNS 135
+ ++ R+G ++Y ++ +E + C + + +K G + + E
Sbjct: 51 DFRNLRIGPEIYGEILQGCVYERDLCTGKQIHARILKNGDLYARNEYIE---------TK 101
Query: 136 LIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ 195
L+ FYAKC L+++ FSK++ +++ SW A++ G E L+ +EM++ ++
Sbjct: 102 LVIFYAKCDDLEIAEVLFSKLRVRNVFSWAAIIGVKCRMGLCEGA--LMGFVEMLENEIF 159
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSV 244
P+ + V AC ++ + G+ +HGYVL+ + + CG + + V
Sbjct: 160 PDNFVVPNVFKACGALQWSRFGRGVHGYVLKAGLEDCVFVASSLADMYGKCGVLDDARKV 219
Query: 245 FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-- 302
F+++ R+VV WN+++ +V++G +A+ LL D+ V+P VT+ + L A +A
Sbjct: 220 FDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKDGVEPTRVTVSTCLSASANMAGV 279
Query: 303 ---------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
A+ GL + + +L++ Y + G I+ + IF M K++V+WN++IS Y
Sbjct: 280 EEGTQCHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMIFDRMFEKDVVTWNLLISGY 339
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/426 (22%), Positives = 182/426 (42%), Gaps = 87/426 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q HA IV G+EL LG+ LL +C W ++
Sbjct: 279 VEEGTQCHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMIFDRMFEKDVVTWNLLISG 338
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G E+ + + LM + ++ D + A + ++ ++GK+V E +
Sbjct: 339 YVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCXCFRHSLESD 398
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEE-MDQDFLVNNSLIDFYA----------------- 141
+ +D++ KCG + +F+ +++D ++ N+L+ YA
Sbjct: 399 IVLASTAMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGHSGEALRLFYEMQL 458
Query: 142 ----------------KCRYLKVSHCK--FSKIKQK----DLVSWNAMLAGYALGGFREE 179
+ R +V+ K F +++ +L+SW M+ G G EE
Sbjct: 459 ESVPPNVITWNLIILSRLRNAEVNEAKEMFLQMQSSGITPNLISWTTMMNGMVQNGCSEE 518
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA----- 234
+ L +M+ ++ M+PN S++ L+A A + G++IHGY++R+ H S+A
Sbjct: 519 AIHFLRKMQ--ESGMRPNAFSITVALSASANLASXHFGRSIHGYIIRNLRHSSSASIETS 576
Query: 235 -------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
CG + + VF + ++ ++N++ISA+ G V +A+ L R + KP+
Sbjct: 577 LVDMYAKCGDINKAERVFESKLSNELPLYNAMISAYALXGNVTEAVALYRSLEDMGXKPD 636
Query: 288 TVTIVSVLPACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIF 335
++T S+L AC + Q + + + + L+D++ K+ ++
Sbjct: 637 SITFTSLLSACNHAGDIDQAIRVFTDMVSNHGVKPCLEHYGLLVDLFASAKETDKALRLM 696
Query: 336 VLMPHK 341
MP+K
Sbjct: 697 EEMPYK 702
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/385 (21%), Positives = 162/385 (42%), Gaps = 92/385 (23%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYN 41
G VH +++ G+E C F+ S L +++ W ++M Y
Sbjct: 180 FGRGVHGYVLKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYV 239
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G EE + L M GV P A + + G
Sbjct: 240 QNGMNEEAIRLLSDMRKDGVEPTRVTVSTCLSASANMAGVEEG----------------- 282
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+C + I +GL + D ++ SL++FY K ++ + F ++ +KD+
Sbjct: 283 ---------TQCHAIAIVNGL----ELDNILGTSLLNFYCKVGLIEYAEMIFDRMFEKDV 329
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
V+WN +++GY G E+ + M + ++ + ++L+ +++A A+ + +KLGK +
Sbjct: 330 VTWNLLISGYVQQGLVEDAIYMCQLMRL--EKLKYDCVTLATLMSAAARTENLKLGKEVQ 387
Query: 222 GYVLRHHIH-----LSTA------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
RH + STA CG ++ + VF+ +D+++WN++++A+ SG
Sbjct: 388 CXCFRHSLESDIVLASTAMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGHSG 447
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQK 330
+AL L ++ + +V PN +T WN +I R + +
Sbjct: 448 EALRLFYEMQLESVPPNVIT------------------------WNLIILSRLRNAEVNE 483
Query: 331 SRKIFVLMPHK----NLVSWNVMIS 351
++++F+ M NL+SW M++
Sbjct: 484 AKEMFLQMQSSGITPNLISWTTMMN 508
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 90/203 (44%), Gaps = 26/203 (12%)
Query: 175 GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH------H 228
G +E +L+ EM+ + P +L C + + GK IH +L++ +
Sbjct: 38 GEIKEALSLVTEMDFRNLRIGPEI--YGEILQGCVYERDLCTGKQIHARILKNGDLYARN 95
Query: 229 IHLSTACGFVICSCS-------VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281
++ T C +F++L R+V W +II R G AL +++
Sbjct: 96 EYIETKLVIFYAKCDDLEIAEVLFSKLRVRNVFSWAAIIGVKCRMGLCEGALMGFVEMLE 155
Query: 282 ANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQK 330
+ P+ + +V AC L L GL FV ++L DMYG+CG +
Sbjct: 156 NEIFPDNFVVPNVFKACGALQWSRFGRGVHGYVLKAGLEDCVFVASSLADMYGKCGVLDD 215
Query: 331 SRKIFVLMPHKNLVSWNVMISVY 353
+RK+F +P +N+V+WN ++ Y
Sbjct: 216 ARKVFDEIPERNVVAWNALMVGY 238
>gi|255570402|ref|XP_002526160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534537|gb|EEF36236.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 762
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 109/433 (25%), Positives = 189/433 (43%), Gaps = 81/433 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G VH +++ G E +F L++++ +WTS++
Sbjct: 34 VEFGRLVHCNVVKLGFEFSSFCVGALIDMYAKNNRMSDCRRVFDGGVSLDTVSWTSLIAG 93
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKV---YKACSELKD------YRVGKDVYDY 90
Y G EE + +F M G PD V Y A L D +V +
Sbjct: 94 YVKAGLPEEALEVFEQMKKVGREPDQVAFVTVINAYVALGRLDDALGLFFQMPNPNVVAW 153
Query: 91 MISIKFEGNACVKRPLLDLF-------IKCGRMEITS-------------GLF------- 123
+ I + ++LF IK R + S GL
Sbjct: 154 NVMISGHAQRGHETKSIELFCNMRKAGIKSTRSTLGSVLSAIASLTDLDFGLLVHAEAIK 213
Query: 124 EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNL 183
+ +D + V +SLI+ YAKC+ L+ + F I ++++V WNAM+ GYA G+ EV L
Sbjct: 214 QGLDSNVYVGSSLINMYAKCKELEAAKKVFDPIDERNVVLWNAMVGGYAQNGYAHEVIEL 273
Query: 184 LDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLS 232
L M+ P+ + + +L+ACA ++ V+ G+ +H ++++ I +
Sbjct: 274 LSNMK--SCGFHPDEFTYTSILSACACLEHVEGGRQLHSIIIKNKFASNLFVGNALIDMY 331
Query: 233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
GF+ + F + +RD V WN+II +V+ V+A + + + + + P+ V++
Sbjct: 332 AKSGFLEDARKQFELMKSRDNVSWNAIIVGYVQEEDEVEAFLMFQKMHLVGILPDEVSLA 391
Query: 293 SVLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK 341
S+L AC + Q GL T + ++LIDMY +CG + ++KI MP
Sbjct: 392 SILSACANVEGFEQGKPIHCLSVKSGLETSLYAGSSLIDMYAKCGDVGSAQKILKSMPEH 451
Query: 342 NLVSWNVMISVYG 354
++VS N +I+ Y
Sbjct: 452 SVVSINALIAGYA 464
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 151/339 (44%), Gaps = 63/339 (18%)
Query: 42 VLGYYEEIVNL-FYLMIDK----GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKF 96
++GY +E + +LM K G+ PD + AC+ ++ + GK
Sbjct: 359 IVGYVQEEDEVEAFLMFQKMHLVGILPDEVSLASILSACANVEGFEQGK----------- 407
Query: 97 EGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKI 156
P+ L +K G ++ +SLID YAKC + + +
Sbjct: 408 --------PIHCLSVKSG-----------LETSLYAGSSLIDMYAKCGDVGSAQKILKSM 448
Query: 157 KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKL 216
+ +VS NA++AGYA E + L ++M+ + P+ I+ + +L C + + L
Sbjct: 449 PEHSVVSINALIAGYAPVNLEEAII-LFEKMQ--AEGLNPSEITFASLLDGCGGPEQLIL 505
Query: 217 GKAIHGYVLRHHIHLS------TACGFVICSCS------VFNQLST-RDVVVWNSIISAF 263
G IH +L+ + + G + S +F++ S + ++W ++IS
Sbjct: 506 GIQIHCLILKRGLQYDDDFLGVSLLGMYVKSLRKTDARILFSEFSNPKSTILWTAMISGL 565
Query: 264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW-------- 315
++ +AL +++ N P+ T VSVL AC L+++ G S ++
Sbjct: 566 AQNNCSDEALQFYQEMRSCNALPDQATFVSVLRACAVLSSIGDGREIHSLIFRTGLDLDE 625
Query: 316 ---NALIDMYGRCGAIQKSRKIFVLMPHKN-LVSWNVMI 350
+ALIDMY +CG ++ S ++F M KN ++SWN MI
Sbjct: 626 STCSALIDMYAKCGDVRSSMQVFEDMHSKNDVISWNSMI 664
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/339 (23%), Positives = 131/339 (38%), Gaps = 64/339 (18%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVL----------------GY 45
E G +H + G+E + GS L++++ + +L GY
Sbjct: 404 EQGKPIHCLSVKSGLETSLYAGSSLIDMYAKCGDVGSAQKILKSMPEHSVVSINALIAGY 463
Query: 46 ----YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
EE + LF M +G+ P + C + +G ++ ++
Sbjct: 464 APVNLEEAIILFEKMQAEGLNPSEITFASLLDGCGGPEQLILGIQIHCLIL--------- 514
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-KD 160
KR L + D DFL SL+ Y K + FS+ K
Sbjct: 515 -KRGL------------------QYDDDFL-GVSLLGMYVKSLRKTDARILFSEFSNPKS 554
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+ W AM++G A +E EM + P+ + VL ACA + + G+ I
Sbjct: 555 TILWTAMISGLAQNNCSDEALQFYQEMR--SCNALPDQATFVSVLRACAVLSSIGDGREI 612
Query: 221 HGYVLRHHIHLSTA-----------CGFVICSCSVFNQL-STRDVVVWNSIISAFVRSGQ 268
H + R + L + CG V S VF + S DV+ WNS+I F ++G
Sbjct: 613 HSLIFRTGLDLDESTCSALIDMYAKCGDVRSSMQVFEDMHSKNDVISWNSMIVGFAKNGY 672
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
+AL + ++ A+V P+ VT + VL AC + +G
Sbjct: 673 AENALRIFNEMKQAHVIPDDVTFLGVLTACSHAGRVSEG 711
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 35/169 (20%)
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTAC-GFVICSCSVFNQLS--- 249
M PN + + VL+ CA++ V+ G+ +H V++ S+ C G +I + N++S
Sbjct: 14 MWPNEFTFAIVLSGCARLDSVEFGRLVHCNVVKLGFEFSSFCVGALIDMYAKNNRMSDCR 73
Query: 250 -------TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
+ D V W S+I+ +V++G +AL++ + +P+ V V+V+ A + L
Sbjct: 74 RVFDGGVSLDTVSWTSLIAGYVKAGLPEEALEVFEQMKKVGREPDQVAFVTVINAYVALG 133
Query: 303 ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
L LG +F MP+ N+V+WNVMIS
Sbjct: 134 RLDDALG------------------------LFFQMPNPNVVAWNVMIS 158
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 98/242 (40%), Gaps = 56/242 (23%)
Query: 3 LGIQVHAHLIVCGVELCA-FLGSQLLEVFCN----------------------WTSMMGM 39
LGIQ+H ++ G++ FLG LL ++ WT+M+
Sbjct: 505 LGIQIHCLILKRGLQYDDDFLGVSLLGMYVKSLRKTDARILFSEFSNPKSTILWTAMISG 564
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+E + + M PD V +AC+ L G++++
Sbjct: 565 LAQNNCSDEALQFYQEMRSCNALPDQATFVSVLRACAVLSSIGDGREIHS---------- 614
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
L + G +D D ++LID YAKC ++ S F + K
Sbjct: 615 ---------LIFRTG-----------LDLDESTCSALIDMYAKCGDVRSSMQVFEDMHSK 654
Query: 160 -DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
D++SWN+M+ G+A G+ E + +EM+ Q + P+ ++ GVL AC+ V G+
Sbjct: 655 NDVISWNSMIVGFAKNGYAENALRIFNEMK--QAHVIPDDVTFLGVLTACSHAGRVSEGR 712
Query: 219 AI 220
I
Sbjct: 713 QI 714
>gi|255582516|ref|XP_002532043.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528286|gb|EEF30333.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 468
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 163/332 (49%), Gaps = 56/332 (16%)
Query: 47 EEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPL 106
+ ++LF + KG+ P++F P + KAC++L + + ++ ++I F N V+ L
Sbjct: 20 HKAISLFRQLKQKGIEPNNFTFPFILKACAKLSNLHYSQVIHTHVIKSPFYSNVFVQTAL 79
Query: 107 LDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNA 166
LD+ +KC +++I + F K+ ++D+ SWNA
Sbjct: 80 LDMCVKCHQLDIAYNV------------------------------FVKMPKRDVTSWNA 109
Query: 167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR 226
ML G+A GF E V + EM + P++++L GV A + +K ++L K++H + +R
Sbjct: 110 MLLGFAQLGFSERVFCMFREMRF--AGVFPDSVTLMGVSGAISCMKDLELAKSVHSFGIR 167
Query: 227 HHIH-----------LSTACGFVICSCSVFN--QLSTRDVVVWNSIISAFVRSGQVVDAL 273
IH L C + + SVFN ++ R VV WNS+I+ + + +DAL
Sbjct: 168 IGIHNDVSVANTWISLYAKCYDLAMAESVFNGIEVGLRSVVSWNSMIAGYAYLEKRIDAL 227
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNALIDMY 322
+ + ++ P+ TIV++L +CL+ A+ QG+ S V N LI MY
Sbjct: 228 NSYKRMLHDGFMPDISTIVTLLSSCLQPEAVRQGMQVHSHGIRFGCDSEIHVANTLISMY 287
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ G + +R +F M +++ V+W MIS Y
Sbjct: 288 SKFGDVYSARCLFDSMCNRSCVTWTSMISGYA 319
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 153/344 (44%), Gaps = 56/344 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ + LG+ E + +F M GV PD V A S +KD + K V+ +
Sbjct: 106 SWNAMLLGFAQLGFSERVFCMFREMRFAGVFPDSVTLMGVSGAISCMKDLELAKSVHSFG 165
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I I + D V N+ I YAKC L ++
Sbjct: 166 IRIG------------------------------IHNDVSVANTWISLYAKCYDLAMAES 195
Query: 152 KFSKIK--QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F+ I+ + +VSWN+M+AGYA + + L M+ P+ ++ +L++C
Sbjct: 196 VFNGIEVGLRSVVSWNSMIAGYAY--LEKRIDALNSYKRMLHDGFMPDISTIVTLLSSCL 253
Query: 210 QVKGVKLGKAIHGYVLR----HHIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNS 258
Q + V+ G +H + +R IH++ G V + +F+ + R V W S
Sbjct: 254 QPEAVRQGMQVHSHGIRFGCDSEIHVANTLISMYSKFGDVYSARCLFDSMCNRSCVTWTS 313
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------- 307
+IS + G + +AL L + A KP+ VT++SV+ C + L G
Sbjct: 314 MISGYAEKGNMDEALKLFNAMEAAGEKPDLVTVLSVISGCGQTGILEVGKWIHVYADSNC 373
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
L V NALIDMY +CG+I + +F MP + +V+W MI+
Sbjct: 374 LKHNVVVCNALIDMYAKCGSIDDAWDLFNTMPDRTVVTWTTMIA 417
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 117/267 (43%), Gaps = 43/267 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y L + +N + M+ G PD + +C + + R G V+ +
Sbjct: 209 SWNSMIAGYAYLEKRIDALNSYKRMLHDGFMPDISTIVTLLSSCLQPEAVRQGMQVHSH- 267
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I+F C D + V N+LI Y+K + + C
Sbjct: 268 -GIRF---GC-------------------------DSEIHVANTLISMYSKFGDVYSARC 298
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + + V+W +M++GYA G +E L + ME +P+ +++ V++ C Q
Sbjct: 299 LFDSMCNRSCVTWTSMISGYAEKGNMDEALKLFNAME--AAGEKPDLVTVLSVISGCGQT 356
Query: 212 KGVKLGKAIHGYV----LRHH-------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+++GK IH Y L+H+ I + CG + + +FN + R VV W ++I
Sbjct: 357 GILEVGKWIHVYADSNCLKHNVVVCNALIDMYAKCGSIDDAWDLFNTMPDRTVVTWTTMI 416
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPN 287
+ +G ++LDL +I +KPN
Sbjct: 417 AGCALNGLFKESLDLFYQMIDFGLKPN 443
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 84/215 (39%), Gaps = 53/215 (24%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF----------------CN-----WTSMMGMYNV 42
G+QVH+H I G + + + L+ ++ CN WTSM+ Y
Sbjct: 261 GMQVHSHGIRFGCDSEIHVANTLISMYSKFGDVYSARCLFDSMCNRSCVTWTSMISGYAE 320
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G +E + LF M G +PD V C + VGK ++ Y S + N V
Sbjct: 321 KGNMDEALKLFNAMEAAGEKPDLVTVLSVISGCGQTGILEVGKWIHVYADSNCLKHNVVV 380
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L+D++ KCG ++ LF M + +V
Sbjct: 381 CNALIDMYAKCGSIDDAWDLFNTM------------------------------PDRTVV 410
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN 197
+W M+AG AL G +E +L +MI ++PN
Sbjct: 411 TWTTMIAGCALNGLFKESLDLF--YQMIDFGLKPN 443
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL---------- 304
++NS I V A+ L R + ++PN T +L AC KL+ L
Sbjct: 5 LFNSQIREAVNQNCAHKAISLFRQLKQKGIEPNNFTFPFILKACAKLSNLHYSQVIHTHV 64
Query: 305 -PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ FV AL+DM +C + + +FV MP +++ SWN M+
Sbjct: 65 IKSPFYSNVFVQTALLDMCVKCHQLDIAYNVFVKMPKRDVTSWNAML 111
>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
Length = 687
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 96/396 (24%), Positives = 183/396 (46%), Gaps = 66/396 (16%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G +H H I G++ F+ + LL+++ W +M+ Y
Sbjct: 29 GRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAH 88
Query: 43 LG-YYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G Y+ + +L + + +RP+ + ++ G V+ Y I N
Sbjct: 89 HGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNR 148
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
K L D L+ +L+D YAKC L + F + ++
Sbjct: 149 NSKSKLTD--------------------GVLLGTALLDMYAKCGSLLYARRVFDAMPARN 188
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
V+W+A++ G+ L R LL + + Q + S++ L ACA + +++G+ +
Sbjct: 189 EVTWSALIGGFVLCS-RMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQL 247
Query: 221 HGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H + + +H + G + + ++F++++ +D V +++++S +V++G+
Sbjct: 248 HALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRA 307
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNAL 318
+A + + + NV+P+ T+VS++PAC LAAL +GL + + + NAL
Sbjct: 308 EEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNAL 367
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
IDMY +CG I SR++F +MP +++VSWN MI+ YG
Sbjct: 368 IDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYG 403
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 144/331 (43%), Gaps = 63/331 (19%)
Query: 56 MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR 115
M+ V P+++ P KACS L D+ G+ ++ R
Sbjct: 1 MLRHRVAPNNYTFPFALKACSALADHHCGRAIH--------------------------R 34
Query: 116 MEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGG 175
I +GL D V+ +L+D Y KC L + F+ + +DLV+WNAMLAGYA G
Sbjct: 35 HAIHAGL----QADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHG 90
Query: 176 FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH----- 230
L M+M ++PN +L +L AQ + G ++H Y +R +H
Sbjct: 91 MYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNS 150
Query: 231 ---------LSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALD 274
L TA CG ++ + VF+ + R+ V W+++I FV ++ A
Sbjct: 151 KSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFL 210
Query: 275 LLRDVIVANV-KPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNALIDMY 322
L + ++ + + +I S L AC L L G + + N+L+ MY
Sbjct: 211 LFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMY 270
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ G I ++ +F M K+ VS++ ++S Y
Sbjct: 271 AKAGLIDQAIALFDEMAVKDTVSYSALVSGY 301
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 125/282 (44%), Gaps = 50/282 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCP----KVYKACSELKDYRVGKDV 87
W++++G + + + LF M+ +G+ F+ P +AC+ L R+G+ +
Sbjct: 191 TWSALIGGFVLCSRMTQAFLLFKAMLAQGLC---FLSPTSIASALRACASLDHLRMGEQL 247
Query: 88 YDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147
+ L K G + D NSL+ YAK +
Sbjct: 248 HA-------------------LLAKSG-----------VHADLTAGNSLLSMYAKAGLID 277
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
+ F ++ KD VS++A+++GY G EE + +M+ +++P+ ++ ++ A
Sbjct: 278 QAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQ--ACNVEPDAATMVSLIPA 335
Query: 208 CAQVKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVW 256
C+ + ++ G+ HG V+ + T+ CG + S VFN + +RD+V W
Sbjct: 336 CSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSW 395
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
N++I+ + G +A L ++ P+ VT + +L AC
Sbjct: 396 NTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSAC 437
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 119/296 (40%), Gaps = 66/296 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ +G Q+HA L GV G+ LL ++ ++++++
Sbjct: 241 LRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSG 300
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G EE +F M V PD + ACS L + G+ + +I
Sbjct: 301 YVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVI------- 353
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
GL E + N+LID YAKC + +S F+ + +
Sbjct: 354 -------------------IRGLASETS----ICNALIDMYAKCGRIDLSRQVFNMMPSR 390
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSWN M+AGY + G +E T L +EM P+ ++ +L+AC+ V GK
Sbjct: 391 DIVSWNTMIAGYGIHGLGKEATALF--LEMNNLGFPPDGVTFICLLSACSHSGLVIEGKH 448
Query: 220 I-----HGYVL----RHHI---HLSTACGFVICSCSVFNQLSTR-DVVVWNSIISA 262
HGY L H+I L + GF+ + + R DV VW +++ A
Sbjct: 449 WFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGA 504
>gi|357474955|ref|XP_003607763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355508818|gb|AES89960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 871
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 98/341 (28%), Positives = 160/341 (46%), Gaps = 48/341 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ Y EE + LF M + + + F + AC++L GK V+ Y+
Sbjct: 202 SWTSMIVAYVQNECAEEGLMLFNRMREGFLDGNVFTVGSLVTACTKLGCLHQGKWVHGYV 261
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I E N+ + LL++++KCG + +F+E VS C
Sbjct: 262 IKNGIEINSYLATSLLNMYVKCGDIGDARSVFDE--------------------FSVSTC 301
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
DLV W AM+ GY G+ + L + + + + PN+++L+ +L+ACAQ+
Sbjct: 302 G----GGDDLVFWTAMIVGYTQRGYPQAALELFTDKKWYR--ILPNSVTLASLLSACAQL 355
Query: 212 KGVKLGKAIHGYVLRHH----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ + +GK +H V+++ + + CG + + VF +DVV WNS+IS
Sbjct: 356 ENIVMGKLLHVLVVKYGLDDTSLRNSLVDMYAKCGLIPDAHYVFATTVDKDVVSWNSVIS 415
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-------- 313
+ +SG +ALDL + + + P+ VT+V VL AC + A GL F
Sbjct: 416 GYAQSGSAYEALDLFNRMRMESFLPDAVTVVGVLSACASVGAHQIGLSLHGFALKYGLVS 475
Query: 314 ----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
V AL++ Y +CG +R +F M KN V+W MI
Sbjct: 476 SSIYVGTALLNFYAKCGDATSARMVFDGMGEKNAVTWAAMI 516
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 95/390 (24%), Positives = 169/390 (43%), Gaps = 84/390 (21%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------------W 33
+ G VH ++I G+E+ ++L + LL ++ W
Sbjct: 251 LHQGKWVHGYVIKNGIEINSYLATSLLNMYVKCGDIGDARSVFDEFSVSTCGGGDDLVFW 310
Query: 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS 93
T+M+ Y GY + + LF + P+ + AC++L++ +GK
Sbjct: 311 TAMIVGYTQRGYPQAALELFTDKKWYRILPNSVTLASLLSACAQLENIVMGK-------- 362
Query: 94 IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKF 153
LL + + + GL D + NSL+D YAKC + +H F
Sbjct: 363 ------------LLHVLV------VKYGL-----DDTSLRNSLVDMYAKCGLIPDAHYVF 399
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG 213
+ KD+VSWN++++GYA G E +L + M M P+ +++ GVL+ACA V
Sbjct: 400 ATTVDKDVVSWNSVISGYAQSGSAYEALDLFNRMRM--ESFLPDAVTVVGVLSACASVGA 457
Query: 214 VKLGKAIHGYVLRH-----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIIS 261
++G ++HG+ L++ I++ TA CG + VF+ + ++ V W ++I
Sbjct: 458 HQIGLSLHGFALKYGLVSSSIYVGTALLNFYAKCGDATSARMVFDGMGEKNAVTWAAMIG 517
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------- 314
G V +L L RD++ + PN V ++L AC + +GL F+
Sbjct: 518 GCGMQGDGVGSLALFRDMLKEELVPNEVVFTTLLAACSHSGMVEEGLMIFDFMCKELNFV 577
Query: 315 -----WNALIDMYGRCGAIQKSRKIFVLMP 339
+ ++D+ R G +Q++ MP
Sbjct: 578 PSMKHYACMVDLLARAGNLQEALDFIDKMP 607
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 125/254 (49%), Gaps = 31/254 (12%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D V SL+D Y+KC L+ + F +I + +VSW +M+ Y EE L + M
Sbjct: 168 DSFVLTSLVDAYSKCGKLRDARKVFDEIPDRSVVSWTSMIVAYVQNECAEEGLMLFNRMR 227
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-----------ACGF 237
+ + N ++ ++ AC ++ + GK +HGYV+++ I +++ CG
Sbjct: 228 --EGFLDGNVFTVGSLVTACTKLGCLHQGKWVHGYVIKNGIEINSYLATSLLNMYVKCGD 285
Query: 238 VICSCSVFNQLSTR------DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI 291
+ + SVF++ S D+V W ++I + + G AL+L D + PN+VT+
Sbjct: 286 IGDARSVFDEFSVSTCGGGDDLVFWTAMIVGYTQRGYPQAALELFTDKKWYRILPNSVTL 345
Query: 292 VSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340
S+L AC +L + GL S + N+L+DMY +CG I + +F
Sbjct: 346 ASLLSACAQLENIVMGKLLHVLVVKYGLDDTS-LRNSLVDMYAKCGLIPDAHYVFATTVD 404
Query: 341 KNLVSWNVMISVYG 354
K++VSWN +IS Y
Sbjct: 405 KDVVSWNSVISGYA 418
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 104/248 (41%), Gaps = 28/248 (11%)
Query: 133 NNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQT 192
+ +LI YA +L+ + F ++ S+ ++ + L V + +
Sbjct: 71 DTTLISLYASFGFLRHARTLFHRLPSPTHHSFKLIIRWHFLNDVHSHVVSFYNLARTTLG 130
Query: 193 DMQPNTISLSGVLAACAQVKGVKLGKAIH----------GYVLRHHIHLSTACGFVICSC 242
+ + S +L +Q++ + L +H +VL + + CG + +
Sbjct: 131 SFN-DLVVFSILLKTASQLRDIVLTTKLHCNILKSNAADSFVLTSLVDAYSKCGKLRDAR 189
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
VF+++ R VV W S+I A+V++ + L L + + N T+ S++ AC KL
Sbjct: 190 KVFDEIPDRSVVSWTSMIVAYVQNECAEEGLMLFNRMREGFLDGNVFTVGSLVTACTKLG 249
Query: 303 ALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP------HKNLVS 345
L Q G+ S++ +L++MY +CG I +R +F +LV
Sbjct: 250 CLHQGKWVHGYVIKNGIEINSYLATSLLNMYVKCGDIGDARSVFDEFSVSTCGGGDDLVF 309
Query: 346 WNVMISVY 353
W MI Y
Sbjct: 310 WTAMIVGY 317
>gi|222636858|gb|EEE66990.1| hypothetical protein OsJ_23896 [Oryza sativa Japonica Group]
Length = 659
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 101/388 (26%), Positives = 174/388 (44%), Gaps = 67/388 (17%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKG 60
+ LG+Q+HA + G+ L +LL V+ + S++ + + + M G
Sbjct: 89 LRLGVQLHALSLSLGLSRHPILLPRLLSVYTSHPSLLPSAASV---AAALAAYQEMGKNG 145
Query: 61 VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITS 120
V PD F P V +AC+E ++ +G+ V+ + +GN + L+ ++ KCG +
Sbjct: 146 VLPDVFTYPSVLRACAEARELVLGRAVHMHAAGAGMDGNLFFQNALMSMYAKCGDLASAR 205
Query: 121 GLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEV 180
+F+ M Q+D+VSWN+M++ YA G E
Sbjct: 206 KVFDGM------------------------------VQRDVVSWNSMISSYAAVGQWAEA 235
Query: 181 TNLLDEM------------EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-- 226
L M EM++ + + ++L L AC++V ++LGK IHG +R
Sbjct: 236 MELFRRMRDEGTEPVGLIREMVRGGAEVDYVTLVIGLNACSRVGWLRLGKEIHGLAVRMC 295
Query: 227 ---------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLR 277
I + C + C+ +F L VV WN+++S+F S +A + R
Sbjct: 296 CDQVESVSNALITMYARCKDMECARMLFRMLECPGVVTWNTMLSSFALSDCAEEASSIFR 355
Query: 278 DVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWNALIDMYGRCG 326
++I VKPN VT+V+ L C ++A L G +WN+LIDMY + G
Sbjct: 356 EMICRGVKPNYVTVVTYLALCARVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSG 415
Query: 327 AIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ ++ +F M +++S+ MI+ YG
Sbjct: 416 RLSVAQNVFDTMDDCDMISYTSMIAGYG 443
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 95/383 (24%), Positives = 179/383 (46%), Gaps = 66/383 (17%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYN 41
LG VH H G++ F + L+ ++ +W SM+ Y
Sbjct: 168 LGRAVHMHAAGAGMDGNLFFQNALMSMYAKCGDLASARKVFDGMVQRDVVSWNSMISSYA 227
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+G + E + LF M D+G P + V R G +V DY +++ NAC
Sbjct: 228 AVGQWAEAMELFRRMRDEGTEPVGLIREMV----------RGGAEV-DY-VTLVIGLNAC 275
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEM--DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ +++ G+ EI GL M DQ V+N+LI YA+C+ ++ + F ++
Sbjct: 276 SRVG----WLRLGK-EI-HGLAVRMCCDQVESVSNALITMYARCKDMECARMLFRMLECP 329
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+V+WN ML+ +AL EE +++ EM I ++PN +++ LA CA+V ++ G+
Sbjct: 330 GVVTWNTMLSSFALSDCAEEASSIFREM--ICRGVKPNYVTVVTYLALCARVANLQHGQE 387
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+HG++++H I + + G + + +VF+ + D++ + S+I+ + G+
Sbjct: 388 LHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDCDMISYTSMIAGYGMQGK 447
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPAC------------LKLAALPQGLGTGSFVWN 316
AL L +I + +KP+ + +V+VL AC + G+ ++
Sbjct: 448 GTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVLEGEELFNKMVISYGIKPQMEHYS 507
Query: 317 ALIDMYGRCGAIQKSRKIFVLMP 339
+ID+Y R G ++K+ ++ P
Sbjct: 508 CMIDLYARAGLLEKAEEMLDHTP 530
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 30/143 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++ G ++H H++ G + L + L++++ ++TSM+
Sbjct: 382 LQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDCDMISYTSMIAG 441
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD-----YMISI 94
Y + G + LF MID G++PDH + V ACS G+++++ Y I
Sbjct: 442 YGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVLEGEELFNKMVISYGIKP 501
Query: 95 KFEGNACVKRPLLDLFIKCGRME 117
+ E +C ++DL+ + G +E
Sbjct: 502 QMEHYSC----MIDLYARAGLLE 520
>gi|225454898|ref|XP_002276015.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Vitis vinifera]
Length = 744
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 90/363 (24%), Positives = 170/363 (46%), Gaps = 58/363 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ Y+ +G+ E +++F+ M+ G+ PD V + + S K + +
Sbjct: 306 SWTSMISAYSRMGWATECIDMFWEMLVSGIYPDGIVISCMLSSFSNSMRVFEAKAFHGLI 365
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEE-------------------------- 125
I + + V+ LL ++ K G +++ F
Sbjct: 366 IRRHYTLDQMVQNALLSMYCKFGFLKLAEKFFGRVNEQNFEAWNLMVSGYGATHLARSIH 425
Query: 126 -------MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFRE 178
MD++ VNNSLID Y K L ++ F +I +D+V+WN +++ YA G
Sbjct: 426 CYMIKNLMDENVSVNNSLIDMYGKSGNLTIARRIFCRIP-RDIVTWNTLISSYAHCGHFA 484
Query: 179 EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA 234
E +L D+M + D++PN+ +L VL+AC+ + ++ G+ +H Y+ ++ ++TA
Sbjct: 485 EALSLYDKM--VLEDLKPNSATLVSVLSACSHLASLEEGEKVHNYINGGKFEFNLSIATA 542
Query: 235 -------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
CG + S +FN + RDV+ WN +IS + G A++ + + ++ KPN
Sbjct: 543 LIDMYAKCGQLEKSREIFNSMHERDVITWNVMISGYGMHGDARSAIEFFQQMEESSAKPN 602
Query: 288 TVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFV 336
+T ++VL AC + +G + + ++D+ GR G +Q++ + +
Sbjct: 603 GLTFLAVLSACAHAGLVKEGKYLFGKMQDYSVAPNLKHYACMVDLLGRSGNLQEAEALVL 662
Query: 337 LMP 339
MP
Sbjct: 663 SMP 665
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 105/413 (25%), Positives = 179/413 (43%), Gaps = 98/413 (23%)
Query: 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS 93
+S + MY+ G EE +F D+ + D + C + + ++G + M
Sbjct: 173 SSFVYMYSKCGVLEEAYGVF----DEILFRDVVAWTALVIGCVQNGESKMGLECLCEMHR 228
Query: 94 IKFEGNACVKRPLLDLFIKCGRM------EITSGLFEEMDQDF--LVNNSLIDFYAKCRY 145
I +G R L F CG + GL + D+ +V + L+ Y+KC
Sbjct: 229 IGGDGERPNFRTLEGGFQACGNLGALLEGRCLHGLVVKTGMDYSQVVQSLLLSMYSKCGN 288
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
+ +H F ++ KD++SW +M++ Y+ G+ E ++ EM+ + + P+ I +S +L
Sbjct: 289 PEEAHRSFCEVLNKDIISWTSMISAYSRMGWATECIDMF--WEMLVSGIYPDGIVISCML 346
Query: 206 AACAQVKGVKLGKAIHGYVLRHHIH---------LSTAC--GFVICSCSVFNQLSTRDVV 254
++ + V KA HG ++R H LS C GF+ + F +++ ++
Sbjct: 347 SSFSNSMRVFEAKAFHGLIIRRHYTLDQMVQNALLSMYCKFGFLKLAEKFFGRVNEQNFE 406
Query: 255 VW--------------------------------NSIISAFVRSGQVVDALDLL----RD 278
W NS+I + +SG + A + RD
Sbjct: 407 AWNLMVSGYGATHLARSIHCYMIKNLMDENVSVNNSLIDMYGKSGNLTIARRIFCRIPRD 466
Query: 279 VIVAN--------------------------VKPNTVTIVSVLPACLKLAALPQG----- 307
++ N +KPN+ T+VSVL AC LA+L +G
Sbjct: 467 IVTWNTLISSYAHCGHFAEALSLYDKMVLEDLKPNSATLVSVLSACSHLASLEEGEKVHN 526
Query: 308 -LGTGSFVWN-----ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ G F +N ALIDMY +CG ++KSR+IF M +++++WNVMIS YG
Sbjct: 527 YINGGKFEFNLSIATALIDMYAKCGQLEKSREIFNSMHERDVITWNVMISGYG 579
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 90/394 (22%), Positives = 168/394 (42%), Gaps = 73/394 (18%)
Query: 5 IQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNVL 43
+Q HA +I G F+ S+L+ ++ + W S++ +
Sbjct: 52 LQSHAFIITSGYSNNIFIASKLISLYASFHKPSCSTELFDEIPHRDAFLWNSIIKAHFSN 111
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G Y ++ + M P+HF P + +C+EL+ G+ ++
Sbjct: 112 GEYSRALDFYQWMRASEALPNHFTIPMIVASCAELELVNYGRSIHG-------------- 157
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
L K G +S V +S + Y+KC L+ ++ F +I +D+V+
Sbjct: 158 -----LVSKLGLFSGSSA----------VGSSFVYMYSKCGVLEEAYGVFDEILFRDVVA 202
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ-PNTISLSGVLAACAQVKGVKLGKAIHG 222
W A++ G G + L EM I D + PN +L G AC + + G+ +HG
Sbjct: 203 WTALVIGCVQNGESKMGLECLCEMHRIGGDGERPNFRTLEGGFQACGNLGALLEGRCLHG 262
Query: 223 YVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V++ + S + CG + F ++ +D++ W S+ISA+ R G +
Sbjct: 263 LVVKTGMDYSQVVQSLLLSMYSKCGNPEEAHRSFCEVLNKDIISWTSMISAYSRMGWATE 322
Query: 272 ALDLLRDVIVANVKPNTVTI---VSVLPACLKL--AALPQGL------GTGSFVWNALID 320
+D+ +++V+ + P+ + I +S +++ A GL V NAL+
Sbjct: 323 CIDMFWEMLVSGIYPDGIVISCMLSSFSNSMRVFEAKAFHGLIIRRHYTLDQMVQNALLS 382
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
MY + G ++ + K F + +N +WN+M+S YG
Sbjct: 383 MYCKFGFLKLAEKFFGRVNEQNFEAWNLMVSGYG 416
>gi|255571614|ref|XP_002526753.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533942|gb|EEF35667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 818
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 131/241 (54%), Gaps = 24/241 (9%)
Query: 136 LIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ 195
LI FY KC L + F ++ ++++VSW AM++GY+ GF E +L + M+++D++
Sbjct: 516 LIVFYTKCDLLMDARHVFDEMSERNVVSWTAMISGYSRRGFAFETLHLF--VRMLRSDIE 573
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSV 244
PN +L+ VL +C G +LG+ IH +++ HI + ++ G ++ + V
Sbjct: 574 PNEFTLATVLTSCTDASGSELGRQIHSLIIKCNYDSHIFVGSSLLDMYAKAGRILEARMV 633
Query: 245 FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL 304
F L RDVV +IIS + + G +AL+L R + + N VT SVL + LAAL
Sbjct: 634 FESLPERDVVSCTAIISGYAQLGLDEEALELFRRLEREGLSSNCVTYASVLTSLSGLAAL 693
Query: 305 PQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G S V N++IDMY +CG++ +R+IF MP + ++SWN M+ Y
Sbjct: 694 DHGKQVHSHVLRRELPFYVVLQNSMIDMYSKCGSLNYARRIFDSMPERTVISWNAMLVGY 753
Query: 354 G 354
G
Sbjct: 754 G 754
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 145/328 (44%), Gaps = 65/328 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G +VHAH+I +L ++L+ + +WT+M+ Y+
Sbjct: 494 GQRVHAHIIKTYYLPSVYLRTRLIVFYTKCDLLMDARHVFDEMSERNVVSWTAMISGYSR 553
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G+ E ++LF M+ + P+ F V +C++ +G+ ++
Sbjct: 554 RGFAFETLHLFVRMLRSDIEPNEFTLATVLTSCTDASGSELGRQIHS------------- 600
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L IKC D V +SL+D YAK + + F + ++D+V
Sbjct: 601 ------LIIKC-----------NYDSHIFVGSSLLDMYAKAGRILEARMVFESLPERDVV 643
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
S A+++GYA G EE L +E + + N ++ + VL + + + + GK +H
Sbjct: 644 SCTAIISGYAQLGLDEEALELFRRLE--REGLSSNCVTYASVLTSLSGLAALDHGKQVHS 701
Query: 223 YVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+VLR I + + CG + + +F+ + R V+ WN+++ + + G +
Sbjct: 702 HVLRRELPFYVVLQNSMIDMYSKCGSLNYARRIFDSMPERTVISWNAMLVGYGKHGMGRE 761
Query: 272 ALDLLRDVIVAN-VKPNTVTIVSVLPAC 298
++L + + N VKP++VTI++VL C
Sbjct: 762 VVELFKLMRTENKVKPDSVTILAVLSGC 789
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 88/173 (50%), Gaps = 22/173 (12%)
Query: 204 VLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRD 252
+L C K ++ G+ +H ++++ + I T C ++ + VF+++S R+
Sbjct: 481 LLNECVNNKAIREGQRVHAHIIKTYYLPSVYLRTRLIVFYTKCDLLMDARHVFDEMSERN 540
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS 312
VV W ++IS + R G + L L ++ ++++PN T+ +VL +C + G S
Sbjct: 541 VVSWTAMISGYSRRGFAFETLHLFVRMLRSDIEPNEFTLATVLTSCTDASGSELGRQIHS 600
Query: 313 -----------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
FV ++L+DMY + G I ++R +F +P +++VS +IS Y
Sbjct: 601 LIIKCNYDSHIFVGSSLLDMYAKAGRILEARMVFESLPERDVVSCTAIISGYA 653
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 98/230 (42%), Gaps = 52/230 (22%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNW---------------------TSMMGMY 40
ELG Q+H+ +I C + F+GS LL+++ T+++ Y
Sbjct: 593 ELGRQIHSLIIKCNYDSHIFVGSSLLDMYAKAGRILEARMVFESLPERDVVSCTAIISGY 652
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
LG EE + LF + +G+ + V + S L GK V+ +++
Sbjct: 653 AQLGLDEEALELFRRLEREGLSSNCVTYASVLTSLSGLAALDHGKQVHSHVL-------- 704
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
R L ++ ++ NS+ID Y+KC L + F + ++
Sbjct: 705 ---RRELPFYV-------------------VLQNSMIDMYSKCGSLNYARRIFDSMPERT 742
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
++SWNAML GY G EV L M + ++P+++++ VL+ C+
Sbjct: 743 VISWNAMLVGYGKHGMGREVVELFKLMR-TENKVKPDSVTILAVLSGCSH 791
>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
Length = 698
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 96/396 (24%), Positives = 183/396 (46%), Gaps = 66/396 (16%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G +H H I G++ F+ + LL+++ W +M+ Y
Sbjct: 29 GRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAH 88
Query: 43 LG-YYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G Y+ + +L + + +RP+ + ++ G V+ Y I N
Sbjct: 89 HGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNR 148
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
K L D L+ +L+D YAKC L + F + ++
Sbjct: 149 NSKSKLTD--------------------GVLLGTALLDMYAKCGSLLYARRVFDAMPARN 188
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
V+W+A++ G+ L R LL + + Q + S++ L ACA + +++G+ +
Sbjct: 189 EVTWSALIGGFVLCS-RMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQL 247
Query: 221 HGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H + + +H + G + + ++F++++ +D V +++++S +V++G+
Sbjct: 248 HALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRA 307
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNAL 318
+A + + + NV+P+ T+VS++PAC LAAL +GL + + + NAL
Sbjct: 308 EEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNAL 367
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
IDMY +CG I SR++F +MP +++VSWN MI+ YG
Sbjct: 368 IDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYG 403
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 143/331 (43%), Gaps = 63/331 (19%)
Query: 56 MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR 115
M+ V P+++ P KACS L D+ G+ ++ R
Sbjct: 1 MLRHRVAPNNYTFPFALKACSALADHHCGRAIH--------------------------R 34
Query: 116 MEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGG 175
I +GL D V+ +L+D Y KC L + F+ + +DLV+WNAMLAGYA G
Sbjct: 35 HAIHAGL----QADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHG 90
Query: 176 FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH----- 230
L M+M ++PN +L +L AQ + G ++H Y +R +H
Sbjct: 91 MYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNS 150
Query: 231 ---------LSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALD 274
L TA CG ++ + VF+ + R+ V W+++I FV ++ A
Sbjct: 151 KSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFL 210
Query: 275 LLRDVIVANV-KPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWNALIDMY 322
L + ++ + + +I S L AC L L G+ N+L+ MY
Sbjct: 211 LFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMY 270
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ G I ++ +F M K+ VS++ ++S Y
Sbjct: 271 AKAGLIDQAIALFDEMAVKDTVSYSALVSGY 301
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 125/282 (44%), Gaps = 50/282 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCP----KVYKACSELKDYRVGKDV 87
W++++G + + + LF M+ +G+ F+ P +AC+ L R+G+ +
Sbjct: 191 TWSALIGGFVLCSRMTQAFLLFKAMLAQGLC---FLSPTSIASALRACASLDHLRMGEQL 247
Query: 88 YDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147
+ L K G + D NSL+ YAK +
Sbjct: 248 HA-------------------LLAKSG-----------VHADLTAGNSLLSMYAKAGLID 277
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
+ F ++ KD VS++A+++GY G EE + +M+ +++P+ ++ ++ A
Sbjct: 278 QAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQ--ACNVEPDAATMVSLIPA 335
Query: 208 CAQVKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVW 256
C+ + ++ G+ HG V+ + T+ CG + S VFN + +RD+V W
Sbjct: 336 CSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSW 395
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
N++I+ + G +A L ++ P+ VT + +L AC
Sbjct: 396 NTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSAC 437
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 119/296 (40%), Gaps = 66/296 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ +G Q+HA L GV G+ LL ++ ++++++
Sbjct: 241 LRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSG 300
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G EE +F M V PD + ACS L + G+ + +I
Sbjct: 301 YVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVI------- 353
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
GL E + N+LID YAKC + +S F+ + +
Sbjct: 354 -------------------IRGLASETS----ICNALIDMYAKCGRIDLSRQVFNMMPSR 390
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSWN M+AGY + G +E T L +EM P+ ++ +L+AC+ V GK
Sbjct: 391 DIVSWNTMIAGYGIHGLGKEATALF--LEMNNLGFPPDGVTFICLLSACSHSGLVIEGKH 448
Query: 220 I-----HGYVL----RHHI---HLSTACGFVICSCSVFNQLSTR-DVVVWNSIISA 262
HGY L H+I L + GF+ + + R DV VW +++ A
Sbjct: 449 WFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGA 504
>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
Length = 832
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/386 (22%), Positives = 180/386 (46%), Gaps = 82/386 (21%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G QVH+ LI CG + F+G+ L++++ W S++
Sbjct: 194 GKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQ 253
Query: 43 LGYYEEIVNLFYLM--IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G++ + + LF M + G++PD F + C+ ++ G+ ++ ++I
Sbjct: 254 FGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLI-------- 305
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
R IT ++ +V L+ Y++C L + F+++ +++
Sbjct: 306 --------------RANIT--------KNIIVETELVHMYSECGRLNYAKEIFNRMAERN 343
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
SWN+M+ GY G +E L +M++ ++P+ SLS +L++C + + G+ +
Sbjct: 344 AYSWNSMIEGYQQNGETQEALRLFKQMQL--NGIKPDCFSLSSMLSSCVSLSDSQKGREL 401
Query: 221 HGYVLRHH-----------IHLSTACGFVICSCSVFNQL--STRDVVVWNSIISAFVRSG 267
H +++R+ + + CG + + V++Q R+ +WNSI++ + G
Sbjct: 402 HNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKG 461
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGA 327
++ + +++ ++++ + +T+V+++ + + AL+DMY +CGA
Sbjct: 462 LKKESFNHFLEMLESDIEYDVLTMVTIVNLLV--------------LETALVDMYSKCGA 507
Query: 328 IQKSRKIFVLMPHKNLVSWNVMISVY 353
I K+R +F M KN+VSWN MIS Y
Sbjct: 508 ITKARTVFDNMNGKNIVSWNAMISGY 533
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 88/401 (21%), Positives = 176/401 (43%), Gaps = 78/401 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCN------------------------WTSMM 37
+ G +H +I G A+L +++L ++ W +M+
Sbjct: 88 QRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMI 147
Query: 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
Y + Y E +F M+ GV PD+F + C L+ GK V+ +I+ F+
Sbjct: 148 LAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFK 207
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
G D V N+LID YAKC + F ++
Sbjct: 208 G------------------------------DTFVGNALIDMYAKCDDEESCLKVFDEMG 237
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+++ V+WN++++ A G + L M+ + +QP+ + + +L CA + G
Sbjct: 238 ERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQG 297
Query: 218 KAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
+ IH +++R +I H+ + CG + + +FN+++ R+ WNS+I + ++
Sbjct: 298 RQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQN 357
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN---------- 316
G+ +AL L + + + +KP+ ++ S+L +C+ L+ +G +F+
Sbjct: 358 GETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQ 417
Query: 317 -ALIDMYGRCGAIQKSRKIF--VLMPHKNLVSWNVMISVYG 354
L+DMY +CG++ + K++ + +N WN +++ Y
Sbjct: 418 VVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYA 458
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/381 (20%), Positives = 174/381 (45%), Gaps = 78/381 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G Q+HAHLI + + ++L+ ++ +W SM+ Y
Sbjct: 297 GRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQ 356
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G +E + LF M G++PD F + +C L D + G++++++++ E +
Sbjct: 357 NGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGIL 416
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+ L+D++ KCG M+ ++++ + K ++
Sbjct: 417 QVVLVDMYAKCGSMDYAWKVYDQTIK----------------------------KDRNTA 448
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
WN++LAGYA G ++E N +EM+++D++ + +++ + V + L A+
Sbjct: 449 LWNSILAGYANKGLKKESFNHF--LEMLESDIEYDVLTMVTI------VNLLVLETAL-- 498
Query: 223 YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
+ + + CG + + +VF+ ++ +++V WN++IS + + G +AL L ++
Sbjct: 499 ------VDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKK 552
Query: 283 NVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQK 330
+ PN VT +++L AC + +GL + + + ++D+ GR G ++
Sbjct: 553 GMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLED 612
Query: 331 SRKIFVLMPHKNLVS-WNVMI 350
+++ MP + VS W ++
Sbjct: 613 AKEFVEKMPIEPEVSTWGALL 633
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 130/332 (39%), Gaps = 79/332 (23%)
Query: 61 VRPDHFVCPKVYKA----CSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM 116
+P V P Y + C + ++ GK ++ MIS + +A + +L L+ + G +
Sbjct: 63 TKPASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCL 122
Query: 117 E---ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYAL 173
+ LFEEM +++L +WN M+ YA
Sbjct: 123 DDLCYARKLFEEM------------------------------PERNLTAWNTMILAYAR 152
Query: 174 GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST 233
E + D M++ + P+ + + L C ++ GK +H ++
Sbjct: 153 VDDYMEAWGIFD--RMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLI-------- 202
Query: 234 ACGF--------------VIC----SC-SVFNQLSTRDVVVWNSIISAFVRSGQVVDALD 274
ACGF C SC VF+++ R+ V WNSIISA + G DAL
Sbjct: 203 ACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALV 262
Query: 275 LLRDVIVAN--VKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDM 321
L + + ++P+ T ++L C QG + V L+ M
Sbjct: 263 LFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHM 322
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
Y CG + +++IF M +N SWN MI Y
Sbjct: 323 YSECGRLNYAKEIFNRMAERNAYSWNSMIEGY 354
>gi|255569325|ref|XP_002525630.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535066|gb|EEF36748.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 765
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 149/288 (51%), Gaps = 13/288 (4%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ + + G ++ + LF LM + VRP+ V AC++ D G+ V Y+
Sbjct: 200 SWNSMIKGFVLGGCPDKALELFQLMKAENVRPNDVTMVGVLSACAKKMDLEFGRRVCHYI 259
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSH 150
N V +LD+++K G +E LF++M++ D ++ID YAK R +
Sbjct: 260 ERNGINVNLTVSNAMLDMYVKNGSLEDARRLFDKMEEKDIFSWTTMIDGYAKRRDFDAAR 319
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + ++D+ +WN +++ Y G +E + E+++ +T +P+ ++L L+ACAQ
Sbjct: 320 SVFDAMPRQDISAWNVLISAYEQDGKPKEALAIFHELQLSKT-AKPDEVTLVSTLSACAQ 378
Query: 211 VKGVKLGKAIHGYVLRHHI----HLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ + +G IH Y+ + I HL+T+ CG V + +F + RDV VW+++
Sbjct: 379 LGAIDIGGWIHVYIKKQDIKLNCHLTTSLIDMYSKCGEVEKALDIFYSVDRRDVFVWSAM 438
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
I+ G+ A+DL ++ V+PN VT ++L AC + +G
Sbjct: 439 IAGLAMHGRGRAAIDLFFEMQETKVRPNAVTFTNLLCACSHTGLVNEG 486
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 136/277 (49%), Gaps = 56/277 (20%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D + NSLI YA C L ++ F KI++KD+VSWN+M+ G+ LGG ++ L M+
Sbjct: 166 DLFILNSLIHCYASCGDLDSAYSVFVKIEEKDVVSWNSMIKGFVLGGCPDKALELFQLMK 225
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVI--------- 239
+++PN +++ GVL+ACA+ ++ G+ + Y+ R+ I+++ +
Sbjct: 226 A--ENVRPNDVTMVGVLSACAKKMDLEFGRRVCHYIERNGINVNLTVSNAMLDMYVKNGS 283
Query: 240 ---------------------------------CSCSVFNQLSTRDVVVWNSIISAFVRS 266
+ SVF+ + +D+ WN +ISA+ +
Sbjct: 284 LEDARRLFDKMEEKDIFSWTTMIDGYAKRRDFDAARSVFDAMPRQDISAWNVLISAYEQD 343
Query: 267 GQVVDALDLLRDVIVANV-KPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFV 314
G+ +AL + ++ ++ KP+ VT+VS L AC +L A+ Q + +
Sbjct: 344 GKPKEALAIFHELQLSKTAKPDEVTLVSTLSACAQLGAIDIGGWIHVYIKKQDIKLNCHL 403
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+LIDMY +CG ++K+ IF + +++ W+ MI+
Sbjct: 404 TTSLIDMYSKCGEVEKALDIFYSVDRRDVFVWSAMIA 440
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 112/225 (49%), Gaps = 25/225 (11%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ-PNTISLSGVLAACAQV 211
F +I Q +L +WN ++ +A E + +LL + M+ PN + V+ A A V
Sbjct: 88 FEEISQPNLYTWNTLIRAFASSP--EPIHSLLIFIRMLYDSPDFPNKFTFPFVIKAAAGV 145
Query: 212 KGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ +AIHG ++L IH +CG + + SVF ++ +DVV WNS+I
Sbjct: 146 ASLPFSQAIHGMAIKASLGSDLFILNSLIHCYASCGDLDSAYSVFVKIEEKDVVSWNSMI 205
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLG 309
FV G AL+L + + NV+PN VT+V VL AC K L G+
Sbjct: 206 KGFVLGGCPDKALELFQLMKAENVRPNDVTMVGVLSACAKKMDLEFGRRVCHYIERNGIN 265
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V NA++DMY + G+++ +R++F M K++ SW MI Y
Sbjct: 266 VNLTVSNAMLDMYVKNGSLEDARRLFDKMEEKDIFSWTTMIDGYA 310
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 97/233 (41%), Gaps = 49/233 (21%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFY-LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W ++ Y G +E + +F+ L + K +PD AC++L +G ++ Y
Sbjct: 333 WNVLISAYEQDGKPKEALAIFHELQLSKTAKPDEVTLVSTLSACAQLGAIDIGGWIHVY- 391
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+K+ D+ + C + SLID Y+KC ++ +
Sbjct: 392 ----------IKKQ--DIKLNCH-----------------LTTSLIDMYSKCGEVEKALD 422
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + ++D+ W+AM+AG A+ G +L EM+ +T ++PN ++ + +L AC+
Sbjct: 423 IFYSVDRRDVFVWSAMIAGLAMHGRGRAAIDLFFEMQ--ETKVRPNAVTFTNLLCACSHT 480
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
V G+ F S F +L D+V+ +I + V
Sbjct: 481 GLVNEGRMF----------------FNQMESSTFKRLQFHDLVLSRTIAKSHV 517
>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 726
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 170/345 (49%), Gaps = 27/345 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W ++ Y G+Y++ + LF M ++PD + V AC + G+ +++++
Sbjct: 190 WNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVK 249
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFL-VNNSLIDFYAKCRYLKVSHC 151
+ ++ ++ L++++ CG M++ +++ + L V+ +++ YAK +K +
Sbjct: 250 DNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARF 309
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ ++DLV W+AM++GYA +E L DEM +Q P+ I++ V++AC+ V
Sbjct: 310 IFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEM--LQKRSVPDQITMLSVISACSHV 367
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ IH YV R I + CG ++ + VF + ++V+ W+S+I
Sbjct: 368 GALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMI 427
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA--- 317
+AF G A+ L R + N++PN VT + VL AC + +G S + N
Sbjct: 428 NAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGI 487
Query: 318 ---------LIDMYGRCGAIQKSRKIFVLMPH-KNLVSWNVMISV 352
++D+Y R ++K+ ++ MP N++ W ++S
Sbjct: 488 SPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSA 532
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 134/279 (48%), Gaps = 55/279 (19%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D + LI YA CR + + F K+ D V+WN ++ GY G ++ L ++M
Sbjct: 155 DPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMR 214
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH------GYVLRHH-----IHLSTACG- 236
+DM+P+++ L VL+AC + G+ IH GY + H I++ CG
Sbjct: 215 --SSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGA 272
Query: 237 --------------FVICSCS----------------VFNQLSTRDVVVWNSIISAFVRS 266
+I S + +F+Q+ RD+V W+++IS + S
Sbjct: 273 MDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAES 332
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVW 315
Q +AL L +++ P+ +T++SV+ AC + AL Q G G V
Sbjct: 333 DQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVN 392
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
NALIDMY +CG + K+R++F MP KN++SW+ MI+ +
Sbjct: 393 NALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFA 431
>gi|15227623|ref|NP_178437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216181|sp|Q9ZQ74.1|PP146_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g03380, mitochondrial; Flags: Precursor
gi|4335760|gb|AAD17437.1| unknown protein [Arabidopsis thaliana]
gi|330250600|gb|AEC05694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 689
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 160/342 (46%), Gaps = 54/342 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W M+ Y + E+V L+ L++ G R D V K KAC+EL+D GK ++ +
Sbjct: 110 WKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIHCQL- 168
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
VK P D + G L+D YAKC +K +H
Sbjct: 169 ---------VKVPSFDNVVLTG---------------------LLDMYAKCGEIKSAHKV 198
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+ I +++V W +M+AGY EE L + M + ++ N + ++ AC ++
Sbjct: 199 FNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMR--ENNVLGNEYTYGTLIMACTKLS 256
Query: 213 GVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ GK HG +++ I LS+ CG + + VFN+ S D+V+W ++I
Sbjct: 257 ALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIV 316
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----LKLAALPQGLGTGSFVW- 315
+ +G V +AL L + + +KPN VTI SVL C L+L GL +W
Sbjct: 317 GYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIWD 376
Query: 316 ----NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
NAL+ MY +C + ++ +F + K++V+WN +IS +
Sbjct: 377 TNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGF 418
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 97/352 (27%), Positives = 160/352 (45%), Gaps = 56/352 (15%)
Query: 26 LLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGK 85
L V C WTSM+ Y EE + LF M + V + + + AC++L GK
Sbjct: 204 LRNVVC-WTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGK 262
Query: 86 DVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRY 145
+ ++ E ++C+ SL+D Y KC
Sbjct: 263 WFHGCLVKSGIELSSCLV------------------------------TSLLDMYVKCGD 292
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
+ + F++ DLV W AM+ GY G E +L +M+ ++ ++PN ++++ VL
Sbjct: 293 ISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVE--IKPNCVTIASVL 350
Query: 206 AACAQVKGVKLGKAIHGYVLRHHI----------HLSTACGFVICSCSVFNQLSTRDVVV 255
+ C ++ ++LG+++HG ++ I H+ C + VF S +D+V
Sbjct: 351 SGCGLIENLELGRSVHGLSIKVGIWDTNVANALVHMYAKCYQNRDAKYVFEMESEKDIVA 410
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-- 313
WNSIIS F ++G + +AL L + +V PN VT+ S+ AC L +L G ++
Sbjct: 411 WNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSV 470
Query: 314 -----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V AL+D Y +CG Q +R IF + KN ++W+ MI YG
Sbjct: 471 KLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTITWSAMIGGYG 522
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 79/382 (20%), Positives = 160/382 (41%), Gaps = 79/382 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G H L+ G+EL + L + LL+++ WT+M+ Y
Sbjct: 261 GKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTH 320
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G E ++LF M ++P+ V C +++ +G+ V+ I +
Sbjct: 321 NGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKV-------- 372
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
G++ D V N+L+ YAKC + + F +KD+V
Sbjct: 373 ------------------GIW-----DTNVANALVHMYAKCYQNRDAKYVFEMESEKDIV 409
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+WN++++G++ G E L M + PN ++++ + +ACA + + +G ++H
Sbjct: 410 AWNSIISGFSQNGSIHEALFLFHRMN--SESVTPNGVTVASLFSACASLGSLAVGSSLHA 467
Query: 223 YVLR------HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
Y ++ +H+ TA CG + +F+ + ++ + W+++I + + G
Sbjct: 468 YSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTITWSAMIGGYGKQGDT 527
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNA 317
+ +L+L +++ KPN T S+L AC + +G + +
Sbjct: 528 IGSLELFEEMLKKQQKPNESTFTSILSACGHTGMVNEGKKYFSSMYKDYNFTPSTKHYTC 587
Query: 318 LIDMYGRCGAIQKSRKIFVLMP 339
++DM R G ++++ I MP
Sbjct: 588 MVDMLARAGELEQALDIIEKMP 609
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 23/246 (9%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D + L+ Y Y K + F +I + D W ML Y L EV L D +
Sbjct: 75 DISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLL- 133
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH----------GYVLRHHIHLSTACGFV 238
++ + + I S L AC +++ + GK IH VL + + CG +
Sbjct: 134 -MKHGFRYDDIVFSKALKACTELQDLDNGKKIHCQLVKVPSFDNVVLTGLLDMYAKCGEI 192
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ VFN ++ R+VV W S+I+ +V++ + L L + NV N T +++ AC
Sbjct: 193 KSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMAC 252
Query: 299 LKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
KL+AL QG + S + +L+DMY +CG I +R++F H +LV W
Sbjct: 253 TKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWT 312
Query: 348 VMISVY 353
MI Y
Sbjct: 313 AMIVGY 318
>gi|302789718|ref|XP_002976627.1| hypothetical protein SELMODRAFT_105356 [Selaginella moellendorffii]
gi|300155665|gb|EFJ22296.1| hypothetical protein SELMODRAFT_105356 [Selaginella moellendorffii]
Length = 734
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 96/390 (24%), Positives = 175/390 (44%), Gaps = 72/390 (18%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G+++H L GV+ +LG+ L++++ N WT M+ Y
Sbjct: 22 GMEIHKKLAESGVDKDTYLGNNLIQMYGNCGCVGKAREIFDKLIDRNVYSWTIMLSAYAQ 81
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G+Y E + L Y M +G+RP+ + ACS L D G+ ++ M+
Sbjct: 82 NGHYMEALVLSYQMDLEGIRPNSVTFLWILGACSNLGDVETGRKIHARMV---------- 131
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
F D D +V+ +++ Y+KC L + F +++KD+V
Sbjct: 132 --------------------FLGWDTDTVVSTAILGMYSKCEKLGDAKKIFDSLRRKDVV 171
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH- 221
SW A++ ++ G L EM++ ++PN + +LAAC + ++ G ++
Sbjct: 172 SWTAIITAFSQLGRPRVALELFWEMDL--DGVKPNESTFVNILAACTYMDALEDGDKLYK 229
Query: 222 -----GY-----VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
GY V + + + G ++ + + F+ L + WN+I+ A+++ G +
Sbjct: 230 RAISCGYGADVFVGSTAVTMYSRFGNLVEAKAAFDHLREKSTGSWNAIVRAYIQHGHISQ 289
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LG--TGSFVWNALIDMYG 323
AL L +++ V +P+T T V +L AC L AL +G +G +A++ MY
Sbjct: 290 ALSLYKEMDVHGAEPDTFTHVCLLGACSSLGALEEGERIHARMGDKPDGLAGSAIVAMYA 349
Query: 324 RCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+CG I+ + F M N+V WN +I+ Y
Sbjct: 350 KCGGIEHAMTAFTKMSSSNVVVWNALIAGY 379
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 91/403 (22%), Positives = 172/403 (42%), Gaps = 85/403 (21%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G +++ I CG F+GS + ++ +W +++
Sbjct: 221 LEDGDKLYKRAISCGYGADVFVGSTAVTMYSRFGNLVEAKAAFDHLREKSTGSWNAIVRA 280
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G+ + ++L+ M G PD F + ACS L G+ ++ M
Sbjct: 281 YIQHGHISQALSLYKEMDVHGAEPDTFTHVCLLGACSSLGALEEGERIHARM-------- 332
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+P D L ++++ YAKC ++ + F+K+
Sbjct: 333 --GDKP-----------------------DGLAGSAIVAMYAKCGGIEHAMTAFTKMSSS 367
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
++V WNA++AGY G +E +L M + ++ + + S VL AC+ K + G+A
Sbjct: 368 NVVVWNALIAGYVQGEHWQEALDLYHAMNL--EGLEADIYTFSSVLGACSGAKDLSEGRA 425
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H ++ +++ CG + + +F +++R+ V WNS+++AF + G
Sbjct: 426 VHARIVSRGLEVVVPLQNGLVNMFAKCGSLTLALEMFRGMASRNTVSWNSMVTAFCQHGD 485
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA--------ALPQ-----GLGTGSFVW 315
A +L +++++ +P+ T S+L C A AL Q G+ + V
Sbjct: 486 GGGAFELFKEMLLEGGEPHEQTFTSILNFCSHSACSSLDQGKALHQRITASGVDSDPTVA 545
Query: 316 NALIDMY-----GRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L+ MY +CGA+ +R +F + KN++SW MI Y
Sbjct: 546 TCLLTMYLLNALAKCGALDDARAVFDGIRGKNVLSWTAMIVGY 588
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/349 (19%), Positives = 144/349 (41%), Gaps = 62/349 (17%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +++ Y +++E ++L++ M +G+ D + V ACS KD G+ V+ ++
Sbjct: 372 WNALIAGYVQGEHWQEALDLYHAMNLEGLEADIYTFSSVLGACSGAKDLSEGRAVHARIV 431
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
S E V PL N L++ +AKC L ++
Sbjct: 432 SRGLE----VVVPL--------------------------QNGLVNMFAKCGSLTLALEM 461
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV- 211
F + ++ VSWN+M+ + G L EM + +P+ + + +L C+
Sbjct: 462 FRGMASRNTVSWNSMVTAFCQHGDGGGAFELFKEM--LLEGGEPHEQTFTSILNFCSHSA 519
Query: 212 -KGVKLGKAIHGYVLRHHIHLS----------------TACGFVICSCSVFNQLSTRDVV 254
+ GKA+H + + CG + + +VF+ + ++V+
Sbjct: 520 CSSLDQGKALHQRITASGVDSDPTVATCLLTMYLLNALAKCGALDDARAVFDGIRGKNVL 579
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------- 307
W ++I + + + AL+L R++ + ++ + +T S+L AC + G
Sbjct: 580 SWTAMIVGYAQHARGDGALELFREMELDGIQADEITFTSILHACSHRGLVRVGREYFRSM 639
Query: 308 -----LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ + +N ++DM R G + ++ ++ + P V+ ++S
Sbjct: 640 VEDHAIAPSAEHYNVVMDMLARAGRVGEAEEVAKVFPAIKHVALMTLVS 688
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 94/241 (39%), Gaps = 56/241 (23%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G VHA ++ G+E+ L + L+ +F +W SM+ +
Sbjct: 423 GRAVHARIVSRGLEVVVPLQNGLVNMFAKCGSLTLALEMFRGMASRNTVSWNSMVTAFCQ 482
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKV-----YKACSELKDYRVGKDVYDYMISIKFE 97
G LF M+ +G P + + ACS L GK ++ + + +
Sbjct: 483 HGDGGGAFELFKEMLLEGGEPHEQTFTSILNFCSHSACSSLDQ---GKALHQRITASGVD 539
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
+ V LL ++ L++ AKC L + F I+
Sbjct: 540 SDPTVATCLLTMY-------------------------LLNALAKCGALDDARAVFDGIR 574
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
K+++SW AM+ GYA + L EME+ +Q + I+ + +L AC+ V++G
Sbjct: 575 GKNVLSWTAMIVGYAQHARGDGALELFREMEL--DGIQADEITFTSILHACSHRGLVRVG 632
Query: 218 K 218
+
Sbjct: 633 R 633
>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
Length = 837
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 95/394 (24%), Positives = 171/394 (43%), Gaps = 75/394 (19%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYN 41
LG QV H+I G +L + + L+++ W +++ Y
Sbjct: 79 LGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYA 138
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
LG+ +E LF M+D+ + P V ACS ++GK+ + +I + F +
Sbjct: 139 QLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFR 198
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ L+ +++K G M+ +F+ + ++D+
Sbjct: 199 IGTALVSMYVKGGSMDGARQVFD------------------------------GLYKRDV 228
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
++N M+ GYA G E+ L M+ Q +PN IS +L C+ + + GKA+H
Sbjct: 229 STFNVMIGGYAKSGDGEKAFQLFYRMQ--QEGFKPNRISFLSILDGCSTPEALAWGKAVH 286
Query: 222 GYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
+ + ++TA CG + + VF+++ RDVV W +I + + +
Sbjct: 287 AQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIE 346
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNALI 319
DA L + ++P+ +T + ++ AC A L G GT V AL+
Sbjct: 347 DAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALV 406
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
MY +CGAI+ +R++F M +++VSW+ MI Y
Sbjct: 407 HMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAY 440
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 107/396 (27%), Positives = 177/396 (44%), Gaps = 75/396 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMG--------------MYNVL--- 43
++LG + HA +I G +G+ L+ ++ SM G +NV+
Sbjct: 178 LKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGG 237
Query: 44 ----GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
G E+ LFY M +G +P+ + CS + GK V+
Sbjct: 238 YAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVH----------A 287
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
C+ L+D D V +LI Y C ++ + F K+K +
Sbjct: 288 QCMNTGLVD--------------------DVRVATALIRMYMGCGSIEGARRVFDKMKVR 327
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSW M+ GYA E+ L M+ + +QP+ I+ ++ ACA + L +
Sbjct: 328 DVVSWTVMIRGYAENSNIEDAFGLFATMQ--EEGIQPDRITYIHIINACASSADLSLARE 385
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH V+R +H+ CG + + VF+ +S RDVV W+++I A+V +G
Sbjct: 386 IHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGC 445
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------VWNA 317
+A + + NV+P+ VT +++L AC L AL G+ + V NA
Sbjct: 446 GEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNA 505
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
LI+M + G+I+++R IF M +++V+WNVMI Y
Sbjct: 506 LINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGY 541
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/350 (23%), Positives = 153/350 (43%), Gaps = 59/350 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT M+ Y E+ LF M ++G++PD + AC+ D + ++++ +
Sbjct: 331 SWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQV 390
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F D LV+ +L+ YAKC +K +
Sbjct: 391 VRAGF------------------------------GTDLLVDTALVHMYAKCGAIKDARQ 420
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + ++D+VSW+AM+ Y G EE M+ + +++P+ ++ +L AC +
Sbjct: 421 VFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMK--RNNVEPDVVTYINLLNACGHL 478
Query: 212 KGVKLGKAIHGYVLR----HHIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNSII 260
+ LG I+ ++ HI + A G + + +F + RDVV WN +I
Sbjct: 479 GALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMI 538
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------- 313
+ G +ALDL ++ +PN+VT V VL AC + + +G S+
Sbjct: 539 GGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGI 598
Query: 314 -----VWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMIS---VYG 354
++ ++D+ GR G + ++ + MP K N W+ +++ +YG
Sbjct: 599 VPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYG 648
>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 537
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 163/331 (49%), Gaps = 26/331 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ + +++L+ M+ G P+++ + +AC++L D G ++ +
Sbjct: 81 WNTMLRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAV 140
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFE-EMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ +E V+ LL L+ C M+ LF+ +++D + ++I+ YAK + V+
Sbjct: 141 RLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQ 200
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +K+ VSW+AM+ GYA G E L ++M++ +PN ++ G L ACA +
Sbjct: 201 LFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQI--AGFRPNHGAIVGALTACAFL 258
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ G+ IH YV R+ I + CG V +C VF+++ RDV + S+I
Sbjct: 259 GALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLI 318
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL----------GT 310
S G A+++ + V PN VT + +L AC ++ + +GL G
Sbjct: 319 SGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGI 378
Query: 311 GSFV--WNALIDMYGRCGAIQKSRKIFVLMP 339
V + L+D+ GR G ++ ++++ MP
Sbjct: 379 EPVVQHYGCLVDLLGRAGMLEDAKRVVREMP 409
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 79/313 (25%), Positives = 133/313 (42%), Gaps = 70/313 (22%)
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK---------VSHCK- 152
R +L L +C +T +++ V+ +L D +A R + +SH
Sbjct: 13 SRRVLSLLDQC----VTMAHIKQIQSHLTVSGTLFDPFAAGRIISFCAVSAQGDISHAYL 68
Query: 153 -FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + ++ WN ML + +E T L M+ T PN + S +L ACAQ+
Sbjct: 69 LFLSLPRRTSFIWNTMLRAFT--DKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQL 126
Query: 212 -----------KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ V+LG + +V +HL +C + + +F+ RDVV W ++I
Sbjct: 127 SDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVI 186
Query: 261 SAFVRSGQVV-------------------------------DALDLLRDVIVANVKPNTV 289
+ + +SGQVV +AL+L D+ +A +PN
Sbjct: 187 NGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHG 246
Query: 290 TIVSVLPACLKLAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLM 338
IV L AC L AL QG ++V ALIDMY +CG ++ + ++F M
Sbjct: 247 AIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEM 306
Query: 339 PHKNLVSWNVMIS 351
+++ ++ +IS
Sbjct: 307 LDRDVFAFTSLIS 319
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 23/144 (15%)
Query: 234 ACGFVICSCSV------------FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281
A G +I C+V F L R +WN+++ AF + L L + ++
Sbjct: 47 AAGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLS 106
Query: 282 ANVKPNTVTIVSVLPACLKLAALPQGL-----------GTGSFVWNALIDMYGRCGAIQK 330
PN T +L AC +L+ L G+ FV N L+ +Y C +
Sbjct: 107 TGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDS 166
Query: 331 SRKIFVLMPHKNLVSWNVMISVYG 354
+R++F ++++V+W +I+ Y
Sbjct: 167 ARRLFDGSVNRDVVTWTAVINGYA 190
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 36/223 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W++M+ Y +G + E + LF M G RP+H AC+ L G+ ++ Y+
Sbjct: 212 SWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYV 271
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSH 150
+ + + L+D++ KCG +E +F+EM D+D SLI A + +
Sbjct: 272 DRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAI 331
Query: 151 CKFSKIKQKDL----VSWNAMLAGYALGGFREEVTNLLDEMEMI---------------- 190
F++++ + + V++ +L+ + G EE + M I
Sbjct: 332 EMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDL 391
Query: 191 ---------------QTDMQPNTISLSGVLAACAQVKGVKLGK 218
+ ++P++ L +L AC V+LGK
Sbjct: 392 LGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGK 434
>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
Length = 512
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 163/331 (49%), Gaps = 26/331 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ + +++L+ M+ G P+++ + +AC++L D G ++ +
Sbjct: 56 WNTMLRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAV 115
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFE-EMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ +E V+ LL L+ C M+ LF+ +++D + ++I+ YAK + V+
Sbjct: 116 RLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQ 175
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +K+ VSW+AM+ GYA G E L ++M++ +PN ++ G L ACA +
Sbjct: 176 LFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQI--AGFRPNHGAIVGALTACAFL 233
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ G+ IH YV R+ I + CG V +C VF+++ RDV + S+I
Sbjct: 234 GALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLI 293
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL----------GT 310
S G A+++ + V PN VT + +L AC ++ + +GL G
Sbjct: 294 SGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGI 353
Query: 311 GSFV--WNALIDMYGRCGAIQKSRKIFVLMP 339
V + L+D+ GR G ++ ++++ MP
Sbjct: 354 EPVVQHYGCLVDLLGRAGMLEDAKRVVREMP 384
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 125/292 (42%), Gaps = 66/292 (22%)
Query: 124 EEMDQDFLVNNSLIDFYAKCRYLK---------VSHCK--FSKIKQKDLVSWNAMLAGYA 172
+++ V+ +L D +A R + +SH F + ++ WN ML +
Sbjct: 5 KQIQSHLTVSGTLFDPFAAGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRAFT 64
Query: 173 LGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV-----------KGVKLGKAIH 221
+E T L M+ T PN + S +L ACAQ+ + V+LG +
Sbjct: 65 --DKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAY 122
Query: 222 GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV----------- 270
+V +HL +C + + +F+ RDVV W ++I+ + +SGQVV
Sbjct: 123 DFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPE 182
Query: 271 --------------------DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGT 310
+AL+L D+ +A +PN IV L AC L AL QG
Sbjct: 183 KNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWI 242
Query: 311 GSFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
++V ALIDMY +CG ++ + ++F M +++ ++ +IS
Sbjct: 243 HAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLIS 294
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 23/144 (15%)
Query: 234 ACGFVICSCSV------------FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281
A G +I C+V F L R +WN+++ AF + L L + ++
Sbjct: 22 AAGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLS 81
Query: 282 ANVKPNTVTIVSVLPACLKLAALPQGL-----------GTGSFVWNALIDMYGRCGAIQK 330
PN T +L AC +L+ L G+ FV N L+ +Y C +
Sbjct: 82 TGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDS 141
Query: 331 SRKIFVLMPHKNLVSWNVMISVYG 354
+R++F ++++V+W +I+ Y
Sbjct: 142 ARRLFDGSVNRDVVTWTAVINGYA 165
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 36/223 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W++M+ Y +G + E + LF M G RP+H AC+ L G+ ++ Y+
Sbjct: 187 SWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYV 246
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSH 150
+ + + L+D++ KCG +E +F+EM D+D SLI A + +
Sbjct: 247 DRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAI 306
Query: 151 CKFSKIKQKDL----VSWNAMLAGYALGGFREEVTNLLDEMEMI---------------- 190
F++++ + + V++ +L+ + G EE + M I
Sbjct: 307 EMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDL 366
Query: 191 ---------------QTDMQPNTISLSGVLAACAQVKGVKLGK 218
+ ++P++ L +L AC V+LGK
Sbjct: 367 LGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGK 409
>gi|125579001|gb|EAZ20147.1| hypothetical protein OsJ_35746 [Oryza sativa Japonica Group]
Length = 601
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 99/396 (25%), Positives = 179/396 (45%), Gaps = 76/396 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMY 40
+ G+ +HA + G+ L + L++++ +W S +G +
Sbjct: 58 KFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCF 117
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G+Y +++ +F M + V P + A EL + +G++V+ Y
Sbjct: 118 LNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGY---------- 167
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
+KR MD D V NSL+D YAK L+ + F ++K ++
Sbjct: 168 SIKRA--------------------MDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRN 207
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+VSWNAM+A G E L+ +M+ ++ PN+I+L VL ACA++ +K+GK I
Sbjct: 208 VVSWNAMIANLVQNGAETEAFRLVTDMQ--KSGECPNSITLVNVLPACARMASLKMGKQI 265
Query: 221 HGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H + +R I + + CG + + ++F + S +D V +N++I + +S
Sbjct: 266 HAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFER-SEKDDVSYNTLILGYSQSPWC 324
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNAL 318
++L L + + + + V+ + L AC L+ G L F+ N+L
Sbjct: 325 FESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFLSNSL 384
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+D+Y + G + + KIF + K++ SWN MI YG
Sbjct: 385 LDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYG 420
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 112/218 (51%), Gaps = 24/218 (11%)
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
+ ++D+VSWN++++ + + G + L + M+++ N SL V+ AC + K
Sbjct: 1 MPERDVVSWNSLVSAFLVNGMFHDARRAL--VSMMRSGFPLNVASLVSVVPACGTEQEEK 58
Query: 216 LGKAIHGYV----LRHHIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNSIISAFV 264
G +IH L ++L+ A G V S VF+ + ++ V WNS I F+
Sbjct: 59 FGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFL 118
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSF 313
+G D L + R + NV P ++T+ S+LPA ++L + G + F
Sbjct: 119 NAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIF 178
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
V N+L+DMY + G+++K+ IF M +N+VSWN MI+
Sbjct: 179 VANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIA 216
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 85/381 (22%), Positives = 160/381 (41%), Gaps = 76/381 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSM---------MGMYNVLGYYEEIVNL 52
+LG +VH + I ++L F+ + L++++ + S+ M NV+ + I NL
Sbjct: 159 DLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANL 218
Query: 53 ---------FYLMID---KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
F L+ D G P+ V AC+ + ++GK ++ + I +
Sbjct: 219 VQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDL 278
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
+ L+D++ KCG++ + +FE +KD
Sbjct: 279 FISNALIDMYSKCGQLSLARNIFER-------------------------------SEKD 307
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
VS+N ++ GY+ + E L +M + D + +S G L+AC + K GK I
Sbjct: 308 DVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDY--DAVSFMGALSACTNLSVFKHGKEI 365
Query: 221 HGYVLRH----HIHLS-------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H ++R H LS T G ++ + +FN+++ +DV WN++I + GQ+
Sbjct: 366 HCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQI 425
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNAL 318
A +L + + + V+ ++VL AC + +G + + +
Sbjct: 426 DIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQNIEPQQMHYACM 485
Query: 319 IDMYGRCGAIQKSRKIFVLMP 339
+D+ GR G + K +I MP
Sbjct: 486 VDLLGRAGQLSKCAEIIRDMP 506
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC--------- 298
+ RDVV WNS++SAF+ +G DA L ++ + N ++VSV+PAC
Sbjct: 1 MPERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFG 60
Query: 299 --LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ A+ GL T + NAL+DMYG+ G ++ S ++F M +N VSWN I +
Sbjct: 61 LSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCF 117
>gi|347954454|gb|AEP33727.1| chlororespiratory reduction 21 [Arabis hirsuta]
Length = 824
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 94/349 (26%), Positives = 167/349 (47%), Gaps = 62/349 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++G+ +G E + F M++ G+ PD+FV P V KAC L+ R G+ V+ Y+
Sbjct: 132 SWAAIIGVKCRIGLVEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYV 191
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ CV V +SL D Y KC L +
Sbjct: 192 AKAGL--HDCV----------------------------FVASSLADMYGKCGVLDDARK 221
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I ++++V+WNA++ GY G EE LL +M + ++P +++S L+A A +
Sbjct: 222 VFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMR--KEGVEPTRVTVSTCLSASANM 279
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICS--CSV---------FNQLSTRDVVVWNSII 260
+G++ GK H + + + L G I + C V F+++ +DVV WN +I
Sbjct: 280 RGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIDYAEMIFDRMIEKDVVTWNLLI 339
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW----- 315
S +V G V +A+ + + + + N+K + VT+ +++ A AA Q L G V
Sbjct: 340 SGYVHQGLVENAIYMCQLMRLENLKFDCVTLSTLMSA----AARTQNLKLGKEVQCYCIR 395
Query: 316 ----------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ +DMY +CG++ ++K+F K+L+ WN +++ Y
Sbjct: 396 HSFESDIVLASTAVDMYAKCGSVVDAKKVFDSTVQKDLILWNTLLAAYA 444
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 96/427 (22%), Positives = 183/427 (42%), Gaps = 88/427 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q HA IV G+EL LG+ +L +C W ++
Sbjct: 282 IEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIDYAEMIFDRMIEKDVVTWNLLISG 341
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G E + + LM + ++ D + A + ++ ++GK+V Y I FE +
Sbjct: 342 YVHQGLVENAIYMCQLMRLENLKFDCVTLSTLMSAAARTQNLKLGKEVQCYCIRHSFESD 401
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEE-MDQDFLVNNSLIDFYAKC--------------- 143
+ +D++ KCG + +F+ + +D ++ N+L+ YA+
Sbjct: 402 IVLASTAVDMYAKCGSVVDAKKVFDSTVQKDLILWNTLLAAYAESGLSGEALRLFYEMQL 461
Query: 144 ------------------RYLKVSHCK--FSKIKQK----DLVSWNAMLAGYALGGFREE 179
R +V+ K F +++ +++SW M+ G G EE
Sbjct: 462 ESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGTFPNMISWTTMMNGLVQNGCSEE 521
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA----- 234
L +M+ ++ M+PN S++ L+AC + + G++IHGY++R+ H S+A
Sbjct: 522 AILFLRKMQ--ESGMRPNVFSITVALSACVNLASLHFGRSIHGYIIRNQQHSSSASIETS 579
Query: 235 -------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV-ANVKP 286
CG + + VF ++ ++N++ISA+ G V +A+ L R + +KP
Sbjct: 580 LVDMYAKCGDINKAERVFGSKLYSELPLYNAMISAYALYGNVKEAVALYRSLEEDVGIKP 639
Query: 287 NTVTIVSVLPACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKI 334
+ +TI +VL AC + Q + + + + ++D+ G +K+ +
Sbjct: 640 DNITITNVLSACNHAGDINQAIEIFTDMVSKHGMKPCLEHYGLMVDLLASAGETEKALSL 699
Query: 335 FVLMPHK 341
MP+K
Sbjct: 700 IEEMPYK 706
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 127/252 (50%), Gaps = 29/252 (11%)
Query: 129 DFLVNNSLID-----FYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNL 183
DF N I+ FYAKC L+V+ FSK++ +++ SW A++ G E L
Sbjct: 93 DFYARNEYIETKLVIFYAKCDALEVAEVLFSKLRVRNVFSWAAIIGVKCRIGLVEGA--L 150
Query: 184 LDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LS 232
+ +EM++ + P+ + V AC ++ + G+ +HGYV + +H +
Sbjct: 151 MGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHDCVFVASSLADMY 210
Query: 233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
CG + + VF+++ R+VV WN+++ +V++G +A+ LL D+ V+P VT+
Sbjct: 211 GKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGVEPTRVTVS 270
Query: 293 SVLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK 341
+ L A + + + GL + + ++++ Y + G I + IF M K
Sbjct: 271 TCLSASANMRGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIDYAEMIFDRMIEK 330
Query: 342 NLVSWNVMISVY 353
++V+WN++IS Y
Sbjct: 331 DVVTWNLLISGY 342
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/385 (21%), Positives = 163/385 (42%), Gaps = 92/385 (23%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYN 41
G VH ++ G+ C F+ S L +++ W ++M Y
Sbjct: 183 FGRGVHGYVAKAGLHDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYV 242
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G EE + L M +GV P A + ++ GK +
Sbjct: 243 QNGMNEEAIRLLSDMRKEGVEPTRVTVSTCLSASANMRGIEEGKQSH------------- 289
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ I +GL + D ++ S+++FY K + + F ++ +KD+
Sbjct: 290 -------------AIAIVNGL----ELDNILGTSILNFYCKVGLIDYAEMIFDRMIEKDV 332
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
V+WN +++GY G E + M + +++ + ++LS +++A A+ + +KLGK +
Sbjct: 333 VTWNLLISGYVHQGLVENAIYMCQLMRL--ENLKFDCVTLSTLMSAAARTQNLKLGKEVQ 390
Query: 222 GYVLRHHIH-----LSTA------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y +RH STA CG V+ + VF+ +D+++WN++++A+ SG
Sbjct: 391 CYCIRHSFESDIVLASTAVDMYAKCGSVVDAKKVFDSTVQKDLILWNTLLAAYAESGLSG 450
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQK 330
+AL L ++ + +V PN +T WN +I R G + +
Sbjct: 451 EALRLFYEMQLESVPPNVIT------------------------WNLIILSLLRNGQVNE 486
Query: 331 SRKIFVLMPHK----NLVSWNVMIS 351
++++F+ M N++SW M++
Sbjct: 487 AKEMFLQMQSSGTFPNMISWTTMMN 511
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 27/204 (13%)
Query: 174 GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH------ 227
G RE ++ L+ EM+ + P +L C + ++ G+ IH +L++
Sbjct: 41 GEIREALS-LVTEMDFRNLRIGPEI--FGEILQGCVYXRDLRTGQQIHARILKNGDFYAR 97
Query: 228 HIHLSTACGFVICSCS-------VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280
+ ++ T C +F++L R+V W +II R G V AL +++
Sbjct: 98 NEYIETKLVIFYAKCDALEVAEVLFSKLRVRNVFSWAAIIGVKCRIGLVEGALMGFVEML 157
Query: 281 VANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQ 329
+ P+ + +V AC L GL FV ++L DMYG+CG +
Sbjct: 158 ENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHDCVFVASSLADMYGKCGVLD 217
Query: 330 KSRKIFVLMPHKNLVSWNVMISVY 353
+RK+F +P +N+V+WN ++ Y
Sbjct: 218 DARKVFDEIPERNVVAWNALMVGY 241
>gi|77554180|gb|ABA96976.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 780
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 100/396 (25%), Positives = 179/396 (45%), Gaps = 76/396 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMY 40
+ G+ +HA + G+ L + L++++ +W S +G +
Sbjct: 237 KFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCF 296
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G+Y +++ +F M + V P + A EL + +G++V+ Y I
Sbjct: 297 LNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSI-------- 348
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
KR MD D V NSL+D YAK L+ + F ++K ++
Sbjct: 349 --KRA--------------------MDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRN 386
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+VSWNAM+A G E L+ +M+ ++ PN+I+L VL ACA++ +K+GK I
Sbjct: 387 VVSWNAMIANLVQNGAETEAFRLVTDMQ--KSGECPNSITLVNVLPACARMASLKMGKQI 444
Query: 221 HGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H + +R I + + CG + + ++F + S +D V +N++I + +S
Sbjct: 445 HAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFER-SEKDDVSYNTLILGYSQSPWC 503
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNAL 318
++L L + + + + V+ + L AC L+ G L F+ N+L
Sbjct: 504 FESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFLSNSL 563
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+D+Y + G + + KIF + K++ SWN MI YG
Sbjct: 564 LDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYG 599
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 124/245 (50%), Gaps = 24/245 (9%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D N+L+ FYA C + F ++ ++D+VSWN++++ + + G + L +
Sbjct: 153 DVFTGNTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFLVNGMFHDARRAL--VS 210
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTAC-------GF 237
M+++ N SL V+ AC + K G +IH L ++L+ A G
Sbjct: 211 MMRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGD 270
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
V S VF+ + ++ V WNS I F+ +G D L + R + NV P ++T+ S+LPA
Sbjct: 271 VEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPA 330
Query: 298 CLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
++L + G + FV N+L+DMY + G+++K+ IF M +N+VSW
Sbjct: 331 LVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSW 390
Query: 347 NVMIS 351
N MI+
Sbjct: 391 NAMIA 395
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 85/381 (22%), Positives = 160/381 (41%), Gaps = 76/381 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSM---------MGMYNVLGYYEEIVNL 52
+LG +VH + I ++L F+ + L++++ + S+ M NV+ + I NL
Sbjct: 338 DLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANL 397
Query: 53 ---------FYLMID---KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
F L+ D G P+ V AC+ + ++GK ++ + I +
Sbjct: 398 VQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDL 457
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
+ L+D++ KCG++ + +FE +KD
Sbjct: 458 FISNALIDMYSKCGQLSLARNIFER-------------------------------SEKD 486
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
VS+N ++ GY+ + E L +M + D + +S G L+AC + K GK I
Sbjct: 487 DVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDY--DAVSFMGALSACTNLSVFKHGKEI 544
Query: 221 HGYVLRH----HIHLS-------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H ++R H LS T G ++ + +FN+++ +DV WN++I + GQ+
Sbjct: 545 HCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQI 604
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNAL 318
A +L + + + V+ ++VL AC + +G + + +
Sbjct: 605 DIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQNIEPQQMHYACM 664
Query: 319 IDMYGRCGAIQKSRKIFVLMP 339
+D+ GR G + K +I MP
Sbjct: 665 VDLLGRAGQLSKCAEIIRDMP 685
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 72/132 (54%), Gaps = 11/132 (8%)
Query: 233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
ACG + VF+++ RDVV WNS++SAF+ +G DA L ++ + N ++V
Sbjct: 165 AACGKACDARRVFDEMPERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLV 224
Query: 293 SVLPAC-----------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK 341
SV+PAC + A+ GL T + NAL+DMYG+ G ++ S ++F M +
Sbjct: 225 SVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQ 284
Query: 342 NLVSWNVMISVY 353
N VSWN I +
Sbjct: 285 NEVSWNSAIGCF 296
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Query: 248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC--------- 298
L R +WNS+ A + +AL + ++ + V+P+ T L A
Sbjct: 77 LRLRSAFLWNSLSRALSSASLPSEALRVYNLMLRSAVRPDDRTFPFALHAAAAAVASAED 136
Query: 299 ----LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L +AL +G F N L+ Y CG +R++F MP +++VSWN ++S +
Sbjct: 137 KGLELHASALRRGHLADVFTGNTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAF 195
>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
Length = 745
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 96/368 (26%), Positives = 156/368 (42%), Gaps = 100/368 (27%)
Query: 56 MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR 115
M+ G R DHF P V KAC EL YR G + + FE N + L+ ++ +CG
Sbjct: 1 MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60
Query: 116 MEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGG 175
+E S +F+E+ Q + D++SWN++++ +
Sbjct: 61 LEEASMIFDEITQRGI---------------------------DDVISWNSIVSAHVKSS 93
Query: 176 FREEVTNLLDEMEMI----QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHL 231
+L +M +I T+ + + IS+ +L AC +K V K +HG +R+ L
Sbjct: 94 NAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFL 153
Query: 232 S-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV---------- 270
CG + + VFN + +DVV WN++++ + +SG
Sbjct: 154 DVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMR 213
Query: 271 -------------------------DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP 305
+AL++ R +I + PN VTI+SVL AC L A
Sbjct: 214 KENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFS 273
Query: 306 QGLGTGSF---------------------VWNALIDMYGRCGAIQKSRKIFVLMP--HKN 342
QG+ ++ V+NALIDMY +C + + +R IF +P +N
Sbjct: 274 QGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERN 333
Query: 343 LVSWNVMI 350
+V+W VMI
Sbjct: 334 VVTWTVMI 341
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/348 (27%), Positives = 158/348 (45%), Gaps = 48/348 (13%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT+++ Y+ G E +N+F MI G P+ V AC+ L + G +++ Y +
Sbjct: 224 WTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSL 283
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
K LL L F D+D +V N+LID Y+KCR K +
Sbjct: 284 ----------KNCLLTL----------DNDFGGEDEDLMVYNALIDMYSKCRSFKAARSI 323
Query: 153 FSKI--KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F I +++++V+W M+ G+A G + L EM + PN ++S +L ACA
Sbjct: 324 FDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAH 383
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTA-------------CGFVICSCSVFNQLSTRDVVVWN 257
+ +++GK IH YVLRHH + S+A CG V + VF+ +S + + W
Sbjct: 384 LAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWT 443
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-------- 309
S+++ + G+ +ALD+ + A P+ +T + VL AC + QGL
Sbjct: 444 SMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSAD 503
Query: 310 ----TGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ + ID+ R G + K+ K MP V W ++S
Sbjct: 504 YGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSA 551
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 151/336 (44%), Gaps = 45/336 (13%)
Query: 62 RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSG 121
R D + AC LK K+V+ I + V L+D + KCG ME
Sbjct: 117 RSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVK 176
Query: 122 LFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK----DLVSWNAMLAGYALGGF 176
+F M+ +D + N+++ Y++ K + F ++++ D+V+W A++AGY+ G
Sbjct: 177 VFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGC 236
Query: 177 REEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH--------- 227
E N+ +MI + PN +++ VL+ACA + G IH Y L++
Sbjct: 237 SHEALNVF--RQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDF 294
Query: 228 ------------HIHLSTACGFVICSCSVFNQ--LSTRDVVVWNSIISAFVRSGQVVDAL 273
I + + C + S+F+ L R+VV W +I + G DAL
Sbjct: 295 GGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDAL 354
Query: 274 DLLRDVIVA--NVKPNTVTIVSVLPACLKLAALPQGL-------------GTGSFVWNAL 318
L ++I V PN TI +L AC LAA+ G + FV N L
Sbjct: 355 KLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCL 414
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
I+MY +CG + +R +F M K+ +SW M++ YG
Sbjct: 415 INMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYG 450
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 102/196 (52%), Gaps = 31/196 (15%)
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGF 237
M++ + + +L VL AC ++ + G A HG ++ + + + CG
Sbjct: 1 MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60
Query: 238 VICSCSVFNQLSTR---DVVVWNSIISAFVRSGQVVDALDLLRDVIV------ANVKPNT 288
+ + +F++++ R DV+ WNSI+SA V+S ALDL + + N + +
Sbjct: 61 LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120
Query: 289 VTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVL 337
++IV++LPAC L A+PQ G FV NALID Y +CG ++ + K+F +
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNM 180
Query: 338 MPHKNLVSWNVMISVY 353
M K++VSWN M++ Y
Sbjct: 181 MEFKDVVSWNAMVAGY 196
>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
Length = 813
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 96/396 (24%), Positives = 183/396 (46%), Gaps = 66/396 (16%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G +H H I G++ F+ + LL+++ W +M+ Y
Sbjct: 144 GRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAH 203
Query: 43 LG-YYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G Y+ + +L + + +RP+ + ++ G V+ Y I N
Sbjct: 204 HGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNR 263
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
K L D L+ +L+D YAKC L + F + ++
Sbjct: 264 NSKSKLTD--------------------GVLLGTALLDMYAKCGSLLYARRVFDAMPARN 303
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
V+W+A++ G+ L R LL + + Q + S++ L ACA + +++G+ +
Sbjct: 304 EVTWSALIGGFVLCS-RMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQL 362
Query: 221 HGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H + + +H + G + + ++F++++ +D V +++++S +V++G+
Sbjct: 363 HALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRA 422
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNAL 318
+A + + + NV+P+ T+VS++PAC LAAL +GL + + + NAL
Sbjct: 423 EEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNAL 482
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
IDMY +CG I SR++F +MP +++VSWN MI+ YG
Sbjct: 483 IDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYG 518
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 147/337 (43%), Gaps = 63/337 (18%)
Query: 50 VNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDL 109
++L+ M+ V P+++ P KACS L D+ G+ ++
Sbjct: 110 LHLYRRMLRHRVAPNNYTFPFALKACSALADHHCGRAIH--------------------- 148
Query: 110 FIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLA 169
R I +GL D V+ +L+D Y KC L + F+ + +DLV+WNAMLA
Sbjct: 149 -----RHAIHAGL----QADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLA 199
Query: 170 GYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI 229
GYA G L M+M ++PN +L +L AQ + G ++H Y +R +
Sbjct: 200 GYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACL 259
Query: 230 H--------------LSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
H L TA CG ++ + VF+ + R+ V W+++I FV +
Sbjct: 260 HPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSR 319
Query: 269 VVDALDLLRDVIVANV-KPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWN 316
+ A L + ++ + + +I S L AC L L G+ N
Sbjct: 320 MTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGN 379
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+L+ MY + G I ++ +F M K+ VS++ ++S Y
Sbjct: 380 SLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGY 416
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 125/282 (44%), Gaps = 50/282 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCP----KVYKACSELKDYRVGKDV 87
W++++G + + + LF M+ +G+ F+ P +AC+ L R+G+ +
Sbjct: 306 TWSALIGGFVLCSRMTQAFLLFKAMLAQGLC---FLSPTSIASALRACASLDHLRMGEQL 362
Query: 88 YDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147
+ L K G + D NSL+ YAK +
Sbjct: 363 HA-------------------LLAKSG-----------VHADLTAGNSLLSMYAKAGLID 392
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
+ F ++ KD VS++A+++GY G EE + +M+ +++P+ ++ ++ A
Sbjct: 393 QAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQ--ACNVEPDAATMVSLIPA 450
Query: 208 CAQVKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVW 256
C+ + ++ G+ HG V+ + T+ CG + S VFN + +RD+V W
Sbjct: 451 CSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSW 510
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
N++I+ + G +A L ++ P+ VT + +L AC
Sbjct: 511 NTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSAC 552
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 13/134 (9%)
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV--DALDLLRDVIVANVKPNTVTI 291
A G + + +F+Q+ + DV +N +I A+ S D L L R ++ V PN T
Sbjct: 69 ASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTF 128
Query: 292 VSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340
L AC LA A+ GL FV AL+DMY +C + + IF MP
Sbjct: 129 PFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPA 188
Query: 341 KNLVSWNVMISVYG 354
++LV+WN M++ Y
Sbjct: 189 RDLVAWNAMLAGYA 202
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 119/296 (40%), Gaps = 66/296 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ +G Q+HA L GV G+ LL ++ ++++++
Sbjct: 356 LRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSG 415
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G EE +F M V PD + ACS L + G+ + +I
Sbjct: 416 YVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVI------- 468
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
GL E + N+LID YAKC + +S F+ + +
Sbjct: 469 -------------------IRGLASETS----ICNALIDMYAKCGRIDLSRQVFNMMPSR 505
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSWN M+AGY + G +E T L +EM P+ ++ +L+AC+ V GK
Sbjct: 506 DIVSWNTMIAGYGIHGLGKEATALF--LEMNNLGFPPDGVTFICLLSACSHSGLVIEGKH 563
Query: 220 I-----HGYVL----RHHI---HLSTACGFVICSCSVFNQLSTR-DVVVWNSIISA 262
HGY L H+I L + GF+ + + R DV VW +++ A
Sbjct: 564 WFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGA 619
>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 684
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 161/345 (46%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ G + +N F +MID G +P+ + EL+ ++ GK+++ +
Sbjct: 180 SWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFS 239
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + E D + NSLID YAK + +
Sbjct: 240 MRMGTE------------------------------TDIFIANSLIDMYAKSGHSTEAST 269
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + ++++VSWNAM+A YAL E + ++M +T PN ++ + VL ACA++
Sbjct: 270 IFHNLDRRNIVSWNAMIANYALNRLPLEAIRFV--IQMQETGECPNAVTFTNVLPACARL 327
Query: 212 KGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ GK IH +V I + CG + + +VFN S +D V +N +I
Sbjct: 328 GFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNT-SRKDEVSYNILI 386
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
+ + + +L+L ++ + KP+ V+ V V+ AC LAAL QG L
Sbjct: 387 IGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLY 446
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ FV N+L+D Y +CG I + ++F + K++ SWN MI YG
Sbjct: 447 SHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYG 491
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 149/321 (46%), Gaps = 53/321 (16%)
Query: 56 MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR 115
M+ +GV+ D P V K CS+ D G +V+ + + F
Sbjct: 1 MVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGF------------------- 41
Query: 116 MEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGG 175
D D V N+L+ Y C +L + F ++ ++D+VSWN ++ ++ G
Sbjct: 42 -----------DTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNG 90
Query: 176 FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA- 234
E N M ++++ ++PN +S+ +L A ++ ++ + IH Y ++ +
Sbjct: 91 DYTEARNYYFWM-ILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTT 149
Query: 235 ----------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV 284
CG V VFN+ ++ V WNSII+ G+ DAL+ R +I A
Sbjct: 150 CNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGA 209
Query: 285 KPNTVTIVSVLPACLKLAALPQG---------LGTGS--FVWNALIDMYGRCGAIQKSRK 333
+PN+VTI S+LP ++L G +GT + F+ N+LIDMY + G ++
Sbjct: 210 QPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEAST 269
Query: 334 IFVLMPHKNLVSWNVMISVYG 354
IF + +N+VSWN MI+ Y
Sbjct: 270 IFHNLDRRNIVSWNAMIANYA 290
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/394 (24%), Positives = 174/394 (44%), Gaps = 77/394 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G++VH + G + ++G+ LL ++ N W +++G+ +V
Sbjct: 29 GMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSV 88
Query: 43 LGYYEEIVNLFYLMIDKGV-RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G Y E N ++ MI + V +P+ + + L+D + + ++ Y + +
Sbjct: 89 NGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVG------ 142
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+D N+L+D Y KC +K F++ +K+
Sbjct: 143 ------------------------LDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNE 178
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSWN+++ G A G + N MI QPN++++S +L +++ K GK IH
Sbjct: 179 VSWNSIINGLACKGRCWDALNAF--RMMIDAGAQPNSVTISSILPVLVELECFKAGKEIH 236
Query: 222 GYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
G+ +R I + G + ++F+ L R++V WN++I+ + + +
Sbjct: 237 GFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPL 296
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALI 319
+A+ + + PN VT +VLPAC +L L GL + FV N+LI
Sbjct: 297 EAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLI 356
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
DMY +CG + +R +F K+ VS+N++I Y
Sbjct: 357 DMYAKCGCLHSARNVFN-TSRKDEVSYNILIIGY 389
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 91/379 (24%), Positives = 164/379 (43%), Gaps = 76/379 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G ++H + G E F+ + L++++ +W +M+ Y +
Sbjct: 232 GKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYAL 291
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
E + M + G P+ V AC+ L GK+++ +
Sbjct: 292 NRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGV---------- 341
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
R+ +TS LF V+NSLID YAKC L + F+ +KD V
Sbjct: 342 ------------RIGLTSDLF--------VSNSLIDMYAKCGCLHSARNVFNT-SRKDEV 380
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
S+N ++ GY+ + NL EM ++ +P+ +S GV++ACA + +K GK +HG
Sbjct: 381 SYNILIIGYSETDDCLQSLNLFSEMRLLGK--KPDVVSFVGVISACANLAALKQGKEVHG 438
Query: 223 YVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
LR+H++ T CG + +C +FNQ+ +DV WN++I + G++
Sbjct: 439 VALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELET 498
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLK-----------LAALPQGLGTGSFVWNALID 320
A+ + + V+ + V+ ++VL AC L Q L + ++D
Sbjct: 499 AISMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQRLEPTEMHYTCMVD 558
Query: 321 MYGRCGAIQKSRKIFVLMP 339
+ GR G ++++ K+ +P
Sbjct: 559 LLGRAGFVEEAAKLIQQLP 577
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 101/242 (41%), Gaps = 51/242 (21%)
Query: 40 YNVL--GYYE-----EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
YN+L GY E + +NLF M G +PD V AC+ L + GK+V+ +
Sbjct: 382 YNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVAL 441
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
R + S LF V+NSL+DFY KC + ++
Sbjct: 442 ----------------------RNHLYSHLF--------VSNSLLDFYTKCGRIDIACRL 471
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F++I KD+ SWN M+ GY + G E ++ + M +Q + +S VL+AC+
Sbjct: 472 FNQILFKDVASWNTMILGYGMIGELETAISMFEAMR--DDTVQYDLVSYIAVLSACSHGG 529
Query: 213 GVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLS-TRDVVVWNSII 260
V+ G +L + L GFV + + QL D +W +++
Sbjct: 530 LVERGWQYFSEMLAQRLEPTEMHYTCMVDLLGRAGFVEEAAKLIQQLPIAPDANIWGALL 589
Query: 261 SA 262
A
Sbjct: 590 GA 591
>gi|302818269|ref|XP_002990808.1| hypothetical protein SELMODRAFT_132472 [Selaginella moellendorffii]
gi|300141369|gb|EFJ08081.1| hypothetical protein SELMODRAFT_132472 [Selaginella moellendorffii]
Length = 484
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 158/335 (47%), Gaps = 47/335 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT ++ Y G+ +E + F M +G++ + AC+ L D R GK ++D++
Sbjct: 25 SWTILITAYAQNGHLDEALVFFSKMALEGIKANAITFVVAINACAMLGDPRRGKALHDFL 84
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ CG + + LV NSLI Y KCR L +
Sbjct: 85 VP-------------------CGFFDSS-----------LVGNSLIHMYGKCRDLDAAKS 114
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+++K+KD+V+WN++++ YA G +E L ++M D P+ I+ G + ACA
Sbjct: 115 AFNELKKKDVVTWNSIISAYAQNGRGKEALELYNDM-----DWTPDKITYVGAIEACASS 169
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+ ++ V + + CG + +VF +S R+V+ WN I+ A+ G+ +
Sbjct: 170 QDLEQAVQTDVVVCNTLLSMYAKCGASAHARAVFESMSRRNVITWNGIMKAYALQGEFGE 229
Query: 272 ALDLLRDVIVA-NVKPNTVTIVSVLPAC-----------LKLAALPQGLGTGSFVWNALI 319
AL L + + VKP+ VT V + C + + + GL + N L+
Sbjct: 230 ALALFQRLEAEKEVKPDRVTFVVAIDCCACKPCLEEGRRIHASVVASGLDLDLIIGNTLV 289
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+MYG+CG + +R +F M +++V+W+ +++ Y
Sbjct: 290 NMYGKCGQVGTARGLFDKMVVRDVVTWSSLLATYA 324
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 114/226 (50%), Gaps = 16/226 (7%)
Query: 140 YAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI 199
Y KC L + F++I +L SW ++ YA G +E +M + ++ N I
Sbjct: 2 YGKCGSLPEAWDCFARIALPNLYSWTILITAYAQNGHLDEALVFFSKMAL--EGIKANAI 59
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYVL-----------RHHIHLSTACGFVICSCSVFNQL 248
+ + ACA + + GKA+H +++ IH+ C + + S FN+L
Sbjct: 60 TFVVAINACAMLGDPRRGKALHDFLVPCGFFDSSLVGNSLIHMYGKCRDLDAAKSAFNEL 119
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
+DVV WNSIISA+ ++G+ +AL+L D+ + P+ +T V + AC L Q +
Sbjct: 120 KKKDVVTWNSIISAYAQNGRGKEALELYNDM---DWTPDKITYVGAIEACASSQDLEQAV 176
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
T V N L+ MY +CGA +R +F M +N+++WN ++ Y
Sbjct: 177 QTDVVVCNTLLSMYAKCGASAHARAVFESMSRRNVITWNGIMKAYA 222
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 121/285 (42%), Gaps = 55/285 (19%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFY-LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
W +M Y + G + E + LF L +K V+PD +
Sbjct: 213 TWNGIMKAYALQGEFGEALALFQRLEAEKEVKPDRVT----------------------F 250
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+++I + C +P L+ + + SGL D D ++ N+L++ Y KC + +
Sbjct: 251 VVAI----DCCACKPCLEEGRRIHASVVASGL----DLDLIIGNTLVNMYGKCGQVGTAR 302
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F K+ +D+V+W+++LA YA G E L M+ Q +PN ++ GVL AC+
Sbjct: 303 GLFDKMVVRDVVTWSSLLATYASNGHGMEGLELFRLMQ--QDYTEPNEVTFLGVLFACSH 360
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
+ V+ K+ Y+ G SC +I RSG++
Sbjct: 361 LGFVRESKS---YLFAMQRDYGLTPGQEHFSC----------------VIDLLARSGRLD 401
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW 315
+A +L+R + +P+ V + S+L AC L +G+ V+
Sbjct: 402 EAEELVRGL---PFQPDNVIVTSLLGACTTQGDLKRGIRAAELVF 443
>gi|302763041|ref|XP_002964942.1| hypothetical protein SELMODRAFT_20633 [Selaginella moellendorffii]
gi|300167175|gb|EFJ33780.1| hypothetical protein SELMODRAFT_20633 [Selaginella moellendorffii]
Length = 604
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 93/342 (27%), Positives = 158/342 (46%), Gaps = 59/342 (17%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y G + + LF+ M +GV+PD V ACS L+ G+ V +
Sbjct: 154 WNAMISSYAQHGQASKSLLLFHQMSLEGVKPDARTFVSVIGACSSLQALEKGRAVEEQAT 213
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
S+ E GR +L+ YAKC L+ +
Sbjct: 214 SMGIEE---------------GR------------------TALLSLYAKCGNLEAARDI 240
Query: 153 FSKIK-QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K+K +K++VSWN+M+A YA G E L + M+ + +QP+ I+ +G L AC
Sbjct: 241 FDKLKYRKNVVSWNSMIAAYAQSGRGREALELYELMK--EEGVQPDDITYAGALGACTSY 298
Query: 212 KGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
G G IH + +R + L TA CG + + S F ++ ++ V W++++
Sbjct: 299 GGSAKGVEIHSRITESKIRTDVFLDTAIVNMYAKCGELETAMSYFEKMRRKNAVTWSAMV 358
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-------- 312
AF++ G +ALDL ++ +P+ +T+ L AC ++ AL +G S
Sbjct: 359 GAFIQHGYDREALDLYLRMVSEGFQPSEITLAGALAACSRIGALQEGKAIHSRIQATETL 418
Query: 313 ----FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
F+ N+L++MY +CG + + +F + ++ SWN +I
Sbjct: 419 QNCLFLQNSLLNMYAKCGCLAIANTMFSNLQRRDSFSWNTII 460
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/361 (24%), Positives = 171/361 (47%), Gaps = 44/361 (12%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y+ G+ EE++ LF M V PD + ACS ++ +GK+V+ +
Sbjct: 6 SWNSMVVAYSQHGHGEEMLELFRKM---DVEPDSITYASILGACSAMELLELGKEVHARV 62
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAK-------- 142
+F+ + + L++++ KCG +E +F+ + D N++I +
Sbjct: 63 SRSRFKSDPALAAALINMYSKCGVLESARRVFDGIQSVDPSPWNAMISGLVQHGRAREAL 122
Query: 143 ----------CRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQT 192
R K S F ++++K + +WNAM++ YA G + L +M +
Sbjct: 123 GLFERMKAESVRIDKASRSNFDRMEKKSVTAWNAMISSYAQHGQASKSLLLFHQMSL--E 180
Query: 193 DMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH--------LSTACGFVICSCSV 244
++P+ + V+ AC+ ++ ++ G+A+ I L CG + + +
Sbjct: 181 GVKPDARTFVSVIGACSSLQALEKGRAVEEQATSMGIEEGRTALLSLYAKCGNLEAARDI 240
Query: 245 FNQLSTR-DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
F++L R +VV WNS+I+A+ +SG+ +AL+L + V+P+ +T L AC
Sbjct: 241 FDKLKYRKNVVSWNSMIAAYAQSGRGREALELYELMKEEGVQPDDITYAGALGACTSYGG 300
Query: 304 LPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+G + T F+ A+++MY +CG ++ + F M KN V+W+ M+
Sbjct: 301 SAKGVEIHSRITESKIRTDVFLDTAIVNMYAKCGELETAMSYFEKMRRKNAVTWSAMVGA 360
Query: 353 Y 353
+
Sbjct: 361 F 361
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/344 (22%), Positives = 151/344 (43%), Gaps = 57/344 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y G E + L+ LM ++GV+PD AC+ G +++ +
Sbjct: 252 SWNSMIAAYAQSGRGREALELYELMKEEGVQPDDITYAGALGACTSYGGSAKGVEIHSRI 311
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
K D ++ ++++ YAKC L+ +
Sbjct: 312 TESKIR------------------------------TDVFLDTAIVNMYAKCGELETAMS 341
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K+++K+ V+W+AM+ + G+ E +L + M+ QP+ I+L+G LAAC+++
Sbjct: 342 YFEKMRRKNAVTWSAMVGAFIQHGYDREALDLY--LRMVSEGFQPSEITLAGALAACSRI 399
Query: 212 KGVKLGKAIHG------------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
++ GKAIH ++ +++ CG + + ++F+ L RD WN+I
Sbjct: 400 GALQEGKAIHSRIQATETLQNCLFLQNSLLNMYAKCGCLAIANTMFSNLQRRDSFSWNTI 459
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------G 307
I G V + L L +++ V P+ VT VL AC L + G
Sbjct: 460 IVGHAHHGDVDEVLSLHGEMVQDGVDPDYVTFACVLLACSHAGLLDRGRSHFLSMEMEFG 519
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMI 350
+ + + ++D+ R G ++ + ++ MP++ + W ++
Sbjct: 520 VAHDTEHYLCMVDLLSRAGRVESAEELVHSMPYEPPAMGWTTLL 563
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 118/265 (44%), Gaps = 74/265 (27%)
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
KDL+SWN+M+ Y+ G EE+ L +M D++P++I+ + +L AC+ ++ ++LGK
Sbjct: 2 KDLISWNSMVVAYSQHGHGEEMLELFRKM-----DVEPDSITYASILGACSAMELLELGK 56
Query: 219 AIHGYVLRHH-----------IHLSTACGFVICSCSVF---------------------- 245
+H V R I++ + CG + + VF
Sbjct: 57 EVHARVSRSRFKSDPALAAALINMYSKCGVLESARRVFDGIQSVDPSPWNAMISGLVQHG 116
Query: 246 ---------------------------NQLSTRDVVVWNSIISAFVRSGQVVDALDLLRD 278
+++ + V WN++IS++ + GQ +L L
Sbjct: 117 RAREALGLFERMKAESVRIDKASRSNFDRMEKKSVTAWNAMISSYAQHGQASKSLLLFHQ 176
Query: 279 VIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN--------ALIDMYGRCGAIQK 330
+ + VKP+ T VSV+ AC L AL +G + AL+ +Y +CG ++
Sbjct: 177 MSLEGVKPDARTFVSVIGACSSLQALEKGRAVEEQATSMGIEEGRTALLSLYAKCGNLEA 236
Query: 331 SRKIF-VLMPHKNLVSWNVMISVYG 354
+R IF L KN+VSWN MI+ Y
Sbjct: 237 ARDIFDKLKYRKNVVSWNSMIAAYA 261
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 104/237 (43%), Gaps = 52/237 (21%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G+++H+ + + FL + ++ ++ W++M+G +
Sbjct: 304 GVEIHSRITESKIRTDVFLDTAIVNMYAKCGELETAMSYFEKMRRKNAVTWSAMVGAFIQ 363
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
GY E ++L+ M+ +G +P ACS + + GK ++
Sbjct: 364 HGYDREALDLYLRMVSEGFQPSEITLAGALAACSRIGALQEGKAIHS------------- 410
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
R++ T E + + NSL++ YAKC L +++ FS ++++D
Sbjct: 411 ------------RIQAT----ETLQNCLFLQNSLLNMYAKCGCLAIANTMFSNLQRRDSF 454
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
SWN ++ G+A G +EV +L EM+Q + P+ ++ + VL AC+ + G++
Sbjct: 455 SWNTIIVGHAHHGDVDEVLSL--HGEMVQDGVDPDYVTFACVLLACSHAGLLDRGRS 509
>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 866
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 93/347 (26%), Positives = 162/347 (46%), Gaps = 63/347 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W ++G Y GY++E + L++ M+ GV+PD + P V + C + D G++V+ +
Sbjct: 162 SWNVLVGGYAKQGYFDEAICLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGREVHVH 221
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
++ +E D V N+LI Y KC +K +
Sbjct: 222 VVRYGYE------------------------------LDIDVVNALITMYVKCGDVKSAR 251
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ ++D++SWNAM++GY G E L M + D P+ ++L+ V++AC
Sbjct: 252 LLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVD--PDLMTLTSVISACEL 309
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVICSC---------------SVFNQLSTRDVVV 255
+ +LG+ IH YV I A +C+ +F+++ +D+V
Sbjct: 310 LGDRRLGRDIHAYV----ITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVS 365
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-- 313
W ++IS + + A+D R + +VKP+ +T+ +VL AC L L G+
Sbjct: 366 WTTMISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAI 425
Query: 314 ---------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
V N LI+MY +C I K+ IF +P KN++SW +I+
Sbjct: 426 KARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIA 472
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 95/393 (24%), Positives = 171/393 (43%), Gaps = 77/393 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G +VH H++ G EL + + L+ ++ +W +M+ Y
Sbjct: 215 GREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFE 274
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G E + LF+ M V PD V AC L D R+G+D++ Y+I+ F + V
Sbjct: 275 NGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISV 334
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L +++ G LF MD C KD+V
Sbjct: 335 CNSLTQMYLYAGSWREAEKLFSRMD---------------C---------------KDIV 364
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW M++GY E+ + M+ Q ++P+ I+++ VL+ACA + + G +H
Sbjct: 365 SWTTMISGYEYNFLPEKAIDTYRMMD--QDSVKPDEITVAAVLSACATLGDLDTGVELHK 422
Query: 223 YVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
++ I++ + C + + +F+ + ++V+ W SII+ + + +
Sbjct: 423 LAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFE 482
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLGTGSFVWNALID 320
AL R + + ++PN +T+ + L AC ++ A L G+G F+ NAL+D
Sbjct: 483 ALIFFRQMKMT-LQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLD 541
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
MY RCG + + F K++ SWN++++ Y
Sbjct: 542 MYVRCGRMNIAWNQFN-SQKKDVSSWNILLTGY 573
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 94/381 (24%), Positives = 166/381 (43%), Gaps = 77/381 (20%)
Query: 2 ELGIQVHAHLIVCG----VELCAFLGSQLL-----------------EVFCNWTSMMGMY 40
LG +HA++I G + +C L L + +WT+M+ Y
Sbjct: 314 RLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMISGY 373
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
E+ ++ + +M V+PD V AC+ L D
Sbjct: 374 EYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGD-------------------- 413
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
LD ++ ++ I + L + +V N+LI+ Y+KC+ + + F I +K+
Sbjct: 414 ------LDTGVELHKLAIKARLISYV----IVANNLINMYSKCKCIDKALDIFHNIPRKN 463
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
++SW +++AG L E +M+M +QPN I+L+ LAACA++ + GK I
Sbjct: 464 VISWTSIIAGLRLNNRCFEALIFFRQMKMT---LQPNAITLTAALAACARIGALMCGKEI 520
Query: 221 HGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H +VLR + L CG + + + FN +DV WN +++ + GQ
Sbjct: 521 HAHVLRTGVGLDDFLPNALLDMYVRCGRMNIAWNQFNS-QKKDVSSWNILLTGYSERGQG 579
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNAL 318
++L ++ A V+P+ +T +S+L C K + QGL S + + +
Sbjct: 580 SVVVELFDRMVKARVRPDEITFISLLCGCGKSQMVRQGLMYFSKMEEYGVTPNLKHYACV 639
Query: 319 IDMYGRCGAIQKSRKIFVLMP 339
+D+ GR G +Q++ K MP
Sbjct: 640 VDLLGRAGELQEAHKFIQKMP 660
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 108/223 (48%), Gaps = 23/223 (10%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F K+ +++L SWN ++ GYA G+ +E L M + ++P+ + VL C +
Sbjct: 152 FGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWV-GGVKPDVYTFPCVLRTCGGIP 210
Query: 213 GVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ G+ +H +V+R+ L CG V + +F+++ RD++ WN++IS
Sbjct: 211 DLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMIS 270
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGT 310
+ +G + L L + +V P+ +T+ SV+ AC L + G
Sbjct: 271 GYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAV 330
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V N+L MY G+ +++ K+F M K++VSW MIS Y
Sbjct: 331 DISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMISGY 373
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 93/209 (44%), Gaps = 25/209 (11%)
Query: 168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH 227
L G G EE LL+ M+ ++ + + ++ C + + G ++ L
Sbjct: 66 LHGLCANGKLEEAMKLLNSMQELRVAVDEDV--FVALVRLCEWKRAHEEGSKVYSVALSS 123
Query: 228 HIHLSTACG------FV-----ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL 276
LS G FV + + VF ++S R++ WN ++ + + G +A+ L
Sbjct: 124 MNSLSVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLY 183
Query: 277 -RDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW-----------NALIDMYGR 324
R + V VKP+ T VL C + L +G V NALI MY +
Sbjct: 184 HRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVK 243
Query: 325 CGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
CG ++ +R +F MP ++++SWN MIS Y
Sbjct: 244 CGDVKSARLLFDRMPRRDIISWNAMISGY 272
>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 785
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 98/399 (24%), Positives = 179/399 (44%), Gaps = 76/399 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN-----------------------WTSMM 37
++LG +H H + G+ + ++ + LL ++ W +M+
Sbjct: 123 LQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMI 182
Query: 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
++ + + ++ M GV P+ + + GK ++ Y I F
Sbjct: 183 AAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFF 242
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
N ++ LLD++ KC + FYA+ K+ F+ +
Sbjct: 243 DNVVLQTALLDMYAKCHLL----------------------FYAR----KI----FNTVN 272
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+K+ V W+AM+ GY L + L D+M I + P +L+ +L ACAQ+ +K G
Sbjct: 273 KKNDVCWSAMIGGYVLHDSISDALALYDDMLCI-YGLNPTPATLATMLRACAQLTDLKRG 331
Query: 218 KAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
K +H ++++ + L T CG + + +++ +D V +++IIS V++
Sbjct: 332 KKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQN 391
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVW 315
G AL + R + + + P T++++LPAC LAAL +G + +
Sbjct: 392 GYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSIC 451
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
NA+IDMY +CG I SR+IF M +++++SWN MI YG
Sbjct: 452 NAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYG 490
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/342 (24%), Positives = 159/342 (46%), Gaps = 53/342 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W M+ Y G +++ + L+ M+ GV P +F P + KACS L+ ++G+ ++ +
Sbjct: 75 WNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSSLQALQLGRLIHTHAH 134
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ + V LL ++ KCG + LF +SH
Sbjct: 135 ILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNS----------------------ISH-- 170
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
+ +D+V+WNAM+A ++ + + + +M+ Q + PN+ +L +L Q
Sbjct: 171 ----QDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQ--QAGVTPNSSTLVSILPTIGQAN 224
Query: 213 GVKLGKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ GKAIH Y +R+ ++ L TA C + + +FN ++ ++ V W+++I
Sbjct: 225 ALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIG 284
Query: 262 AFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVLPACLKLAALPQ-----------GLG 309
+V + DAL L D++ + + P T+ ++L AC +L L + G+
Sbjct: 285 GYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMD 344
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ V N+LI MY +CG + + M K+ VS++ +IS
Sbjct: 345 LDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIIS 386
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/351 (23%), Positives = 160/351 (45%), Gaps = 69/351 (19%)
Query: 33 WTSMMGMY-------NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGK 85
W++M+G Y + L Y++++ ++ G+ P + +AC++L D + GK
Sbjct: 279 WSAMIGGYVLHDSISDALALYDDMLCIY------GLNPTPATLATMLRACAQLTDLKRGK 332
Query: 86 DVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRY 145
++ +MI K G MD D V NSLI YAKC
Sbjct: 333 KLHCHMI-------------------KSG-----------MDLDTTVGNSLISMYAKCGI 362
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
+ + ++ KD VS++A+++G G+ E+ + +M+ + + P ++ +L
Sbjct: 363 MDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQ--SSGIAPYLETMIALL 420
Query: 206 AACAQVKGVKLGKAIHGY-VLRHH----------IHLSTACGFVICSCSVFNQLSTRDVV 254
AC+ + ++ G HGY V+R I + + CG + S +F+++ RD++
Sbjct: 421 PACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDII 480
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---LGTG 311
WN++I + G V+AL L +++ +KP+ VT+++VL AC + +G +
Sbjct: 481 SWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSM 540
Query: 312 SFVWN---------ALIDMYGRCGAIQKSRKIFVLMPH-KNLVSWNVMISV 352
S +N ++D+ R G + ++ MP N+ W +++
Sbjct: 541 SQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAA 591
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 110/225 (48%), Gaps = 26/225 (11%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F +I + +V WN M+ YA G ++ L + M+Q + P + +L AC+ ++
Sbjct: 64 FDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLY--LHMLQLGVTPTNFTFPFLLKACSSLQ 121
Query: 213 GVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLS--TRDVVVWNSI 259
++LG+ IH YV +H+ CG + + ++FN +S RD+V WN++
Sbjct: 122 ALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAM 181
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------ 313
I+AF + + + A V PN+ T+VS+LP + AL QG ++
Sbjct: 182 IAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFF 241
Query: 314 -----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ AL+DMY +C + +RKIF + KN V W+ MI Y
Sbjct: 242 FDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGY 286
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 13/124 (10%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
VF+Q+ VV+WN +I + SG ++ L ++ V P T +L AC L A
Sbjct: 63 VFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSSLQA 122
Query: 304 LP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH--KNLVSWNVMI 350
L GL +V AL+ MY +CG + +++ +F + H +++V+WN MI
Sbjct: 123 LQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMI 182
Query: 351 SVYG 354
+ +
Sbjct: 183 AAFS 186
>gi|347954466|gb|AEP33733.1| chlororespiratory reduction 21, partial [Lepidium sativum]
Length = 805
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 168/349 (48%), Gaps = 62/349 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++G+ +G E + F M++ GV PD++V P V KAC L G+ V+ Y+
Sbjct: 118 SWAAIIGLKCRIGLCEGALLGFVEMLENGVLPDNYVVPNVCKACGALHWSWFGRGVHGYV 177
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + CV V +SL D Y KC L +
Sbjct: 178 LKAGL--HDCV----------------------------FVASSLADMYGKCGVLDDARM 207
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I ++++V+WNA++ GY G EE LL +M + ++P +++S L+A A +
Sbjct: 208 VFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMR--KEGIEPTRVTVSTCLSASANM 265
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICS--CSV---------FNQLSTRDVVVWNSII 260
G++ GK H + + + L G I + C V F+++ +D+V WN +I
Sbjct: 266 GGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDRIIGKDIVTWNLLI 325
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW----- 315
S +V+ G V DA+ + + + + N++ ++VT+ +++ A AA Q L G V
Sbjct: 326 SGYVQQGLVDDAMYMCKLMRLENLRYDSVTLSTLMSA----AARTQNLNLGKEVQCYSIR 381
Query: 316 ----------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
++ +DMY +CG+I ++K+F K+L+ WN +++ Y
Sbjct: 382 HSFESEIVLASSTVDMYAKCGSIVDAKKVFESTAEKDLILWNTLLAAYA 430
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 80/385 (20%), Positives = 166/385 (43%), Gaps = 92/385 (23%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYN 41
G VH +++ G+ C F+ S L +++ W ++M Y
Sbjct: 169 FGRGVHGYVLKAGLHDCVFVASSLADMYGKCGVLDDARMVFDEIPERNVVAWNALMVGYV 228
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G EE + L M +G+ P A + + GK +
Sbjct: 229 QNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSH------------- 275
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ I +GL + D ++ S+++FY K ++ + F +I KD+
Sbjct: 276 -------------AIAIVNGL----ELDNILGTSILNFYCKVGLIEYAEMIFDRIIGKDI 318
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
V+WN +++GY G ++ + M + +++ ++++LS +++A A+ + + LGK +
Sbjct: 319 VTWNLLISGYVQQGLVDDAMYMCKLMRL--ENLRYDSVTLSTLMSAAARTQNLNLGKEVQ 376
Query: 222 GYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y +RH + + CG ++ + VF + +D+++WN++++A+ SG
Sbjct: 377 CYSIRHSFESEIVLASSTVDMYAKCGSIVDAKKVFESTAEKDLILWNTLLAAYADSGLSG 436
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQK 330
+AL L D+++ +V PN +T WN++I + R G + +
Sbjct: 437 EALKLFYDMLLESVPPNIIT------------------------WNSIILSFLRNGQVDE 472
Query: 331 SRKIFVLMPHK----NLVSWNVMIS 351
++++F+ M NL+SW M++
Sbjct: 473 AKEMFLQMQSSGIFPNLISWTTMMN 497
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/426 (22%), Positives = 178/426 (41%), Gaps = 87/426 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q HA IV G+EL LG+ +L +C W ++
Sbjct: 268 IEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDRIIGKDIVTWNLLISG 327
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G ++ + + LM + +R D + A + ++ +GK+V Y I FE
Sbjct: 328 YVQQGLVDDAMYMCKLMRLENLRYDSVTLSTLMSAAARTQNLNLGKEVQCYSIRHSFESE 387
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKC--------------- 143
+ +D++ KCG + +FE ++D ++ N+L+ YA
Sbjct: 388 IVLASSTVDMYAKCGSIVDAKKVFESTAEKDLILWNTLLAAYADSGLSGEALKLFYDMLL 447
Query: 144 ------------------RYLKVSHCK--FSKIKQK----DLVSWNAMLAGYALGGFREE 179
R +V K F +++ +L+SW M+ G+ G EE
Sbjct: 448 ESVPPNIITWNSIILSFLRNGQVDEAKEMFLQMQSSGIFPNLISWTTMMNGWVQNGCSEE 507
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST------ 233
L +M+ ++ ++PN ++S L+AC + + G++IHGY++R+ H S+
Sbjct: 508 AIIFLRKMQ--ESGLRPNAFTISVALSACTHLVSLNFGRSIHGYIIRNFQHSSSVSFETS 565
Query: 234 ------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
CG + + VF ++ + N++ISA+ G V +++ L R + +KP+
Sbjct: 566 LVDLYAKCGDINQAEKVFGNKLYDELPLHNAMISAYALYGNVKESITLYRRLEDMAMKPD 625
Query: 288 TVTIVSVLPACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIF 335
+T S+L AC + Q + + + + ++D+ G K+ ++
Sbjct: 626 NITFTSLLYACTHAGDIVQAINIFTEMVSKHDMKPCLEHYGLMVDILASSGETNKALELI 685
Query: 336 VLMPHK 341
MP+K
Sbjct: 686 EEMPYK 691
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 149/300 (49%), Gaps = 34/300 (11%)
Query: 77 ELKDYRVGKDVYDYMIS-IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNS 135
+ ++ R+G ++Y ++ +E + C + + +K +G F ++ +
Sbjct: 40 DFRNVRIGPEIYGEILQGCVYERDLCTGQQIHARILK-------NGAFYARNE--YIETK 90
Query: 136 LIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ 195
L+ FYAKC L+V+ FS+++ +++ SW A++ G E LL +EM++ +
Sbjct: 91 LLIFYAKCDALEVAQDLFSRLRVRNVFSWAAIIGLKCRIGLCEGA--LLGFVEMLENGVL 148
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSV 244
P+ + V AC + G+ +HGYVL+ +H + CG + + V
Sbjct: 149 PDNYVVPNVCKACGALHWSWFGRGVHGYVLKAGLHDCVFVASSLADMYGKCGVLDDARMV 208
Query: 245 FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL 304
F+++ R+VV WN+++ +V++G +A+ LL D+ ++P VT+ + L A + +
Sbjct: 209 FDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSASANMGGI 268
Query: 305 PQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ GL + + ++++ Y + G I+ + IF + K++V+WN++IS Y
Sbjct: 269 EEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDRIIGKDIVTWNLLISGY 328
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 26/199 (13%)
Query: 179 EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS------ 232
E L+ EM+ + P +L C + + G+ IH +L++ +
Sbjct: 31 EALRLVKEMDFRNVRIGPEI--YGEILQGCVYERDLCTGQQIHARILKNGAFYARNEYIE 88
Query: 233 -------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK 285
C + + +F++L R+V W +II R G AL +++ V
Sbjct: 89 TKLLIFYAKCDALEVAQDLFSRLRVRNVFSWAAIIGLKCRIGLCEGALLGFVEMLENGVL 148
Query: 286 PNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKI 334
P+ + +V AC L L GL FV ++L DMYG+CG + +R +
Sbjct: 149 PDNYVVPNVCKACGALHWSWFGRGVHGYVLKAGLHDCVFVASSLADMYGKCGVLDDARMV 208
Query: 335 FVLMPHKNLVSWNVMISVY 353
F +P +N+V+WN ++ Y
Sbjct: 209 FDEIPERNVVAWNALMVGY 227
>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 833
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 161/345 (46%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ G + +N F +MID G +P+ + EL+ ++ GK+++ +
Sbjct: 329 SWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFS 388
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + E D + NSLID YAK + +
Sbjct: 389 MRMGTE------------------------------TDIFIANSLIDMYAKSGHSTEAST 418
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + ++++VSWNAM+A YAL E + +M+ +T PN ++ + VL ACA++
Sbjct: 419 IFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQ--ETGECPNAVTFTNVLPACARL 476
Query: 212 KGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ GK IH +V I + CG + + +VFN S +D V +N +I
Sbjct: 477 GFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNT-SRKDEVSYNILI 535
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
+ + + +L+L ++ + KP+ V+ V V+ AC LAAL QG L
Sbjct: 536 IGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLY 595
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ FV N+L+D Y +CG I + ++F + K++ SWN MI YG
Sbjct: 596 SHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYG 640
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 149/321 (46%), Gaps = 53/321 (16%)
Query: 56 MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR 115
M+ +GV+ D P V K CS+ D G +V+ + + F
Sbjct: 150 MVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGF------------------- 190
Query: 116 MEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGG 175
D D V N+L+ Y C +L + F ++ ++D+VSWN ++ ++ G
Sbjct: 191 -----------DTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNG 239
Query: 176 FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA- 234
E N M ++++ ++PN +S+ +L A ++ ++ + IH Y ++ +
Sbjct: 240 DYTEARNYYFWM-ILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTT 298
Query: 235 ----------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV 284
CG V VFN+ ++ V WNSII+ G+ DAL+ R +I A
Sbjct: 299 CNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGA 358
Query: 285 KPNTVTIVSVLPACLKLAALPQG---------LGTGS--FVWNALIDMYGRCGAIQKSRK 333
+PN+VTI S+LP ++L G +GT + F+ N+LIDMY + G ++
Sbjct: 359 QPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEAST 418
Query: 334 IFVLMPHKNLVSWNVMISVYG 354
IF + +N+VSWN MI+ Y
Sbjct: 419 IFHNLDRRNIVSWNAMIANYA 439
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 95/394 (24%), Positives = 174/394 (44%), Gaps = 77/394 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G++VH + G + ++G+ LL ++ N W +++G+ +V
Sbjct: 178 GMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSV 237
Query: 43 LGYYEEIVNLFYLMIDKGV-RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G Y E N ++ MI + V +P+ + + L+D + + ++ Y + +
Sbjct: 238 NGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVG------ 291
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+D N+L+D Y KC +K F++ +K+
Sbjct: 292 ------------------------LDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNE 327
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSWN+++ G A G + N MI QPN++++S +L +++ K GK IH
Sbjct: 328 VSWNSIINGLACKGRCWDALNAF--RMMIDAGAQPNSVTISSILPVLVELECFKAGKEIH 385
Query: 222 GYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
G+ +R I + G + ++F+ L R++V WN++I+ + + +
Sbjct: 386 GFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPL 445
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALI 319
+A+ + + PN VT +VLPAC +L L GL + FV N+LI
Sbjct: 446 EAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLI 505
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
DMY +CG + +R +F K+ VS+N++I Y
Sbjct: 506 DMYAKCGCLHSARNVFN-TSRKDEVSYNILIIGY 538
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 91/379 (24%), Positives = 164/379 (43%), Gaps = 76/379 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G ++H + G E F+ + L++++ +W +M+ Y +
Sbjct: 381 GKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYAL 440
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
E + M + G P+ V AC+ L GK+++ +
Sbjct: 441 NRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGV---------- 490
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
R+ +TS LF V+NSLID YAKC L + F+ +KD V
Sbjct: 491 ------------RIGLTSDLF--------VSNSLIDMYAKCGCLHSARNVFNT-SRKDEV 529
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
S+N ++ GY+ + NL EM ++ +P+ +S GV++ACA + +K GK +HG
Sbjct: 530 SYNILIIGYSETDDCLQSLNLFSEMRLLGK--KPDVVSFVGVISACANLAALKQGKEVHG 587
Query: 223 YVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
LR+H++ T CG + +C +FNQ+ +DV WN++I + G++
Sbjct: 588 VALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELET 647
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLK-----------LAALPQGLGTGSFVWNALID 320
A+ + + V+ + V+ ++VL AC L Q L + ++D
Sbjct: 648 AISMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQRLEPTEMHYTCMVD 707
Query: 321 MYGRCGAIQKSRKIFVLMP 339
+ GR G ++++ K+ +P
Sbjct: 708 LLGRAGFVEEAAKLIQQLP 726
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 101/242 (41%), Gaps = 51/242 (21%)
Query: 40 YNVL--GYYE-----EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
YN+L GY E + +NLF M G +PD V AC+ L + GK+V+ +
Sbjct: 531 YNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVAL 590
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
R + S LF V+NSL+DFY KC + ++
Sbjct: 591 ----------------------RNHLYSHLF--------VSNSLLDFYTKCGRIDIACRL 620
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F++I KD+ SWN M+ GY + G E ++ + M +Q + +S VL+AC+
Sbjct: 621 FNQILFKDVASWNTMILGYGMIGELETAISMFEAMR--DDTVQYDLVSYIAVLSACSHGG 678
Query: 213 GVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLS-TRDVVVWNSII 260
V+ G +L + L GFV + + QL D +W +++
Sbjct: 679 LVERGWQYFSEMLAQRLEPTEMHYTCMVDLLGRAGFVEEAAKLIQQLPIAPDANIWGALL 738
Query: 261 SA 262
A
Sbjct: 739 GA 740
>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 687
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 100/397 (25%), Positives = 183/397 (46%), Gaps = 52/397 (13%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNVLG 44
+VH CGV F+G+ L+ + +WTS+ Y G
Sbjct: 99 EVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCG 158
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
+ + +++F M GV+P+ + AC+ELKD + GK+++ + + N V
Sbjct: 159 FPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCS 218
Query: 105 PLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK---- 159
L+ L+ KC + +F+ M +D + N ++ Y K + + F K+ +
Sbjct: 219 ALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRA 278
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D +WNA++ G G EE + +M+ + +PN I++S +L AC+ + +++GK
Sbjct: 279 DEATWNAVIGGCMENGRSEEAVEMFRKMQ--KMGFKPNEITISSILPACSFSENLRMGKE 336
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH YV RH +++ CG + S +VF+ + +DVV WN++I A G
Sbjct: 337 IHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGN 396
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTGSFV------WN 316
+AL L ++++ V+PN+VT VL C + +G +G V ++
Sbjct: 397 GKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYS 456
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMISV 352
++D+Y R G + ++ K MP + S W +++
Sbjct: 457 CVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAA 493
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 107/223 (47%), Gaps = 24/223 (10%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I Q D + + +++ G E + ++ + ++P+ ACA
Sbjct: 35 FDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQ--ERGIKPDMPVFLAAAKACAVSG 92
Query: 213 GVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
K +H +V IH C V + VF+ L RDVV W S+ S
Sbjct: 93 DALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSS 152
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGT 310
+V+ G +D+ R++ + VKPN +T+ S+LPAC +L A+ G+
Sbjct: 153 CYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVV 212
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
FV +AL+ +Y +C +++++R +F LMPH+++VSWN +++ Y
Sbjct: 213 NLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAY 255
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC----- 298
+F+ + D +++ISA G +A+ + + +KP+ ++ AC
Sbjct: 34 LFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGD 93
Query: 299 -LKLAALPQ-----GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
L++ + G+ + FV NALI YG+C ++ +R++F + +++VSW + S
Sbjct: 94 ALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSC 153
Query: 353 Y 353
Y
Sbjct: 154 Y 154
>gi|255539985|ref|XP_002511057.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550172|gb|EEF51659.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 543
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 158/346 (45%), Gaps = 56/346 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y G E + L+ LM GV +++ P ++KAC+ GK + +
Sbjct: 108 WNTMIRAYANAGLCFETLELYMLMRRAGVSSNNYTFPFIFKACASNSLLLQGKVAHGDAV 167
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F D D V +L+D YAKC
Sbjct: 168 KADF------------------------------DSDVYVKAALVDMYAKCGQFCDGRKI 197
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ KDLV W AM+ Y G +E LL +M+ Q + P+ +++ V +A Q+
Sbjct: 198 FDEMPVKDLVCWTAMITAYEQGEKPDEALILLRKMQ--QHGLFPDEVTMVSVASAIGQLW 255
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
K +++H Y +R + + T CG + SC +F+ + R+V+ WNS++S
Sbjct: 256 DAKWAQSVHAYAIRRSFLKEIFVANSILAMHTKCGNMEKSCLIFDMMDERNVISWNSMLS 315
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW------ 315
+ ++GQ +AL L + + +PN+VT + ++ AC L + G F+
Sbjct: 316 GYTQNGQASEALFLFDKMRDSGCEPNSVTALIMVAACAYLGSRHLGGKFHDFILDSKMKI 375
Query: 316 -----NALIDMYGRCGAIQKSRKIF--VLMPHKNLVSWNVMISVYG 354
NAL+DMY +CG ++ + ++F V +N+ SWNV+IS YG
Sbjct: 376 DMNLRNALMDMYAKCGDLKTAVEMFNDVHPSERNVSSWNVLISGYG 421
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 136/312 (43%), Gaps = 47/312 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT+M+ Y +E + L M G+ PD V A +L D + + V+ Y I
Sbjct: 209 WTAMITAYEQGEKPDEALILLRKMQQHGLFPDEVTMVSVASAIGQLWDAKWAQSVHAYAI 268
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+R L ++ V NS++ + KC ++ S
Sbjct: 269 ----------RRSFL--------------------KEIFVANSILAMHTKCGNMEKSCLI 298
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + +++++SWN+ML+GY G E L D+M + +PN+++ ++AACA +
Sbjct: 299 FDMMDERNVISWNSMLSGYTQNGQASEALFLFDKMR--DSGCEPNSVTALIMVAACAYLG 356
Query: 213 GVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQL--STRDVVVWNSI 259
LG H ++L + + CG + + +FN + S R+V WN +
Sbjct: 357 SRHLGGKFHDFILDSKMKIDMNLRNALMDMYAKCGDLKTAVEMFNDVHPSERNVSSWNVL 416
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG--LGTGSFVWNA 317
IS + G +AL L + +V+PN +T S+L AC + +G L G + ++
Sbjct: 417 ISGYGMHGHGKEALRLYSRMQEESVEPNHITFTSILSACSHAGLIDEGRNLKEGCYEFSQ 476
Query: 318 LIDMYGRCGAIQ 329
+++ G IQ
Sbjct: 477 VLESGGNLLQIQ 488
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 84/189 (44%), Gaps = 30/189 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y G E + LF M D G P+ + AC+ L +G +D++
Sbjct: 309 SWNSMLSGYTQNGQASEALFLFDKMRDSGCEPNSVTALIMVAACAYLGSRHLGGKFHDFI 368
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ K + + ++ L+D++ KCG ++ +F ++
Sbjct: 369 LDSKMKIDMNLRNALMDMYAKCGDLKTAVEMFNDVHP----------------------- 405
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
++++ SWN +++GY + G +E L M+ + ++PN I+ + +L+AC+
Sbjct: 406 -----SERNVSSWNVLISGYGMHGHGKEALRLYSRMQ--EESVEPNHITFTSILSACSHA 458
Query: 212 KGVKLGKAI 220
+ G+ +
Sbjct: 459 GLIDEGRNL 467
>gi|347954478|gb|AEP33739.1| chlororespiratory reduction 21, partial [Matthiola sinuata]
Length = 794
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 96/345 (27%), Positives = 164/345 (47%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++G+ +G E + F M++ G+ PD+FV P V KAC L+ R G+ V+ Y+
Sbjct: 104 SWAAIIGVKCRIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYV 163
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ CV V +SL D Y KC L +
Sbjct: 164 AKAGL--HHCV----------------------------FVASSLADMYGKCGVLDDARK 193
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F I ++ V+WNA++ GY G EE LL EM + ++P +++S L+A A +
Sbjct: 194 VFDYIPDRNAVAWNALMVGYVQNGMNEEAIRLLSEMR--KEGIEPTRVTVSTCLSASANM 251
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICS--CSV---------FNQLSTRDVVVWNSII 260
G++ GK H + + + L G I + C V F+ + +DVV WN +I
Sbjct: 252 GGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVVTWNLLI 311
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----LKLAA------LPQGLG 309
S +V+ G V +A+ + + + N+K + VT+ +++ A LKL + GL
Sbjct: 312 SGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLE 371
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + + +DMY +CG+I ++K+F K+L+ WN ++S Y
Sbjct: 372 SDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYA 416
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 146/305 (47%), Gaps = 44/305 (14%)
Query: 77 ELKDYRVGKDVYDYMIS-IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNS 135
+ ++ R+G ++Y ++ +E + C + + +K G DF N
Sbjct: 26 DYRNIRIGPEIYGEILQGCVYERDLCTGQQIHAQILKKG--------------DFYARNE 71
Query: 136 LID-----FYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
I+ FYAKC L+++ FSK++ +++ SW A++ G E L+ +EM+
Sbjct: 72 YIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEGA--LMGFVEML 129
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVI 239
+ + P+ + V AC ++ + G+ +HGYV + +H + CG +
Sbjct: 130 ENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLD 189
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ VF+ + R+ V WN+++ +V++G +A+ LL ++ ++P VT+ + L A
Sbjct: 190 DARKVFDYIPDRNAVAWNALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSASA 249
Query: 300 KLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
+ + + GL + + ++++ Y + G I+ + IF M K++V+WN+
Sbjct: 250 NMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVVTWNL 309
Query: 349 MISVY 353
+IS Y
Sbjct: 310 LISGY 314
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 93/426 (21%), Positives = 182/426 (42%), Gaps = 88/426 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q HA IV G+EL LG+ +L +C W ++
Sbjct: 254 IEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVVTWNLLISG 313
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G EE + + LM + ++ D + A + ++ ++GK++ Y I E +
Sbjct: 314 YVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLESD 373
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEE-MDQDFLVNNSLIDFYAKC--------------- 143
+ +D++ KCG + +F+ + +D ++ N+L+ YA
Sbjct: 374 IVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYEMQL 433
Query: 144 ------------------RYLKVSHCK--FSKIKQK----DLVSWNAMLAGYALGGFREE 179
R +V+ K F +++ +L+SW M+ G G EE
Sbjct: 434 ESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGIFPNLISWTTMMNGLVQNGCSEE 493
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----------- 228
L +M+ ++ ++PN +++ L+ACA + + G++IHGY++R+
Sbjct: 494 AILFLRKMQ--ESRLRPNAFTITVALSACANLASLHFGRSIHGYIIRNQQYSFSASIETS 551
Query: 229 -IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
+ + CG + + VF ++ ++N++ISA+ G+V +A+ L R + VKP+
Sbjct: 552 LVDMYAKCGDINKAERVFGSKLCSELPLYNAMISAYALYGKVREAITLYRSLEDGGVKPD 611
Query: 288 TVTIVSVLPACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIF 335
+TI S+L +C + Q + S + + ++D+ G K+ ++
Sbjct: 612 NITITSLL-SCNYGRDVNQAIEVFSDMVSKHGMKPCLEHYGLMVDLLASAGETDKALRLM 670
Query: 336 VLMPHK 341
MP+K
Sbjct: 671 EEMPYK 676
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/385 (22%), Positives = 162/385 (42%), Gaps = 92/385 (23%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYN 41
G VH ++ G+ C F+ S L +++ W ++M Y
Sbjct: 155 FGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLDDARKVFDYIPDRNAVAWNALMVGYV 214
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G EE + L M +G+ P A + + GK +
Sbjct: 215 QNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSH------------- 261
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ I +GL + D ++ S+++FY K ++ + F + +KD+
Sbjct: 262 -------------AIAIVNGL----ELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDV 304
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
V+WN +++GY G EE + M + +++ + ++LS +++A + +KLGK I
Sbjct: 305 VTWNLLISGYVQQGLVEEAIYMCQLMR--RENLKFDCVTLSTLMSAATSTQNLKLGKEIQ 362
Query: 222 GYVLRHHIH-----LSTA------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y +RH + STA CG ++ + VF+ +D+++WN+++SA+ SG
Sbjct: 363 CYCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSG 422
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQK 330
+AL L ++ + +V PN +T WN +I R G + +
Sbjct: 423 EALRLFYEMQLESVPPNVIT------------------------WNLIILSLLRNGQVNE 458
Query: 331 SRKIFVLMPHK----NLVSWNVMIS 351
++++F+ M NL+SW M++
Sbjct: 459 AKEMFLQMQSSGIFPNLISWTTMMN 483
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 88/204 (43%), Gaps = 27/204 (13%)
Query: 174 GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR------H 227
G RE ++ L+ EM+ + P +L C + + G+ IH +L+
Sbjct: 13 GEIREALS-LVTEMDYRNIRIGPEI--YGEILQGCVYERDLCTGQQIHAQILKKGDFYAR 69
Query: 228 HIHLSTACGFVICSCS-------VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280
+ ++ T C +F++L R+V W +II R G AL +++
Sbjct: 70 NEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEGALMGFVEML 129
Query: 281 VANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQ 329
+ P+ + +V AC L G G FV ++L DMYG+CG +
Sbjct: 130 ENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLD 189
Query: 330 KSRKIFVLMPHKNLVSWNVMISVY 353
+RK+F +P +N V+WN ++ Y
Sbjct: 190 DARKVFDYIPDRNAVAWNALMVGY 213
Score = 38.1 bits (87), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 93/217 (42%), Gaps = 19/217 (8%)
Query: 22 LGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY 81
GS+L + +M+ Y + G E + L+ + D GV+PD+ + +C+ +D
Sbjct: 569 FGSKLCSELPLYNAMISAYALYGKVREAITLYRSLEDGGVKPDNITITSLL-SCNYGRDV 627
Query: 82 RVGKDVYDYMISIKFEGNACVKR--PLLDLFIKCGRMEITSGLFEEM--DQDFLVNNSLI 137
+V+ M+S K C++ ++DL G + L EEM D + SL
Sbjct: 628 NQAIEVFSDMVS-KHGMKPCLEHYGLMVDLLASAGETDKALRLMEEMPYKPDARMVQSLF 686
Query: 138 DFYAKCRYLK-VSHCKFSKIKQKDLVSWNAML--AGYALGGFREEVTNLLDEMEMIQTDM 194
+ +K + V + ++ + S N ++ YA+ G +EV + + M++
Sbjct: 687 ESCSKQHKTELVEYLSKHLLESEPDNSGNYVMISNAYAVEGSWDEVAKMREMMKVKGLKK 746
Query: 195 QPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHL 231
+P + Q+KG + G +H +V HL
Sbjct: 747 KPG--------CSWIQIKGEEEG--VHVFVANDKTHL 773
>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 687
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 159/325 (48%), Gaps = 53/325 (16%)
Query: 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL 107
E V+L+Y M+++GV D++ P V AC+ L ++G+ + ++ F
Sbjct: 94 EAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGF----------- 142
Query: 108 DLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAM 167
D V N+LI FY C + F + +D+V+WN M
Sbjct: 143 -------------------GSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIM 183
Query: 168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV--- 224
+ + G E+ +LLDEM + +++P+ +++ ++ ACAQ+ ++ GK +H Y
Sbjct: 184 INAHLNKGLSEKAFDLLDEMTKLD-NLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKEL 242
Query: 225 -LRHHIHLSTACGFVICSC-------SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL 276
L ++ ++ A + C C VFN++ +DV+ W S++S +SG +AL L
Sbjct: 243 GLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALF 302
Query: 277 RDVIVANVKPNTVTIVSVLPACLKLAALPQG----LGTGSFVWN-------ALIDMYGRC 325
+ + + ++ + +T+V VL AC + AL QG L F N AL+DMY +C
Sbjct: 303 QKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKC 362
Query: 326 GAIQKSRKIFVLMPHKNLVSWNVMI 350
G+I + ++F M +N+ +WN +I
Sbjct: 363 GSIDLALQVFRRMRVRNVFTWNALI 387
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 129/246 (52%), Gaps = 27/246 (10%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCK--FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
L ++ LI F A +++ + F++++ D N M+ GYA E +L
Sbjct: 44 LFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLY--YF 101
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGF 237
M++ + + + VLAACA++ VKLG+ H VL++ I CG
Sbjct: 102 MVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGS 161
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVLP 296
C+C VF++ + RDVV WN +I+A + G A DLL ++ + N++P+ VT+VS++P
Sbjct: 162 FGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVP 221
Query: 297 ACLKLAALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
AC +L L +G S+ V NA++DMY +C I+ ++++F + K+++S
Sbjct: 222 ACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLS 281
Query: 346 WNVMIS 351
W M+S
Sbjct: 282 WTSMLS 287
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 144/311 (46%), Gaps = 48/311 (15%)
Query: 14 CGVELCA---FLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMID-KGVRPDHFVCP 69
CG CA F S + +V W M+ + G E+ +L M +RPD
Sbjct: 159 CGSFGCACDVFDESTVRDVV-TWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMV 217
Query: 70 KVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQD 129
+ AC++L + GK ++ Y + +D++
Sbjct: 218 SLVPACAQLGNLERGKFLHSYSKELG------------------------------LDEN 247
Query: 130 FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
VNN+++D Y KC ++ + F++I++KD++SW +ML+G A G+ +E L +M++
Sbjct: 248 LRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQL 307
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH----LSTA-------CGFV 238
+ ++ + I+L GVL+ACAQ + GK IH + + I+ L TA CG +
Sbjct: 308 NKIEL--DEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSI 365
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ VF ++ R+V WN++I G DA+ L + + P+ VT +++L AC
Sbjct: 366 DLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCAC 425
Query: 299 LKLAALPQGLG 309
+ +GL
Sbjct: 426 SHAGLVDEGLA 436
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 113/267 (42%), Gaps = 54/267 (20%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ GY++E + LF M + D V AC++ GK Y ++
Sbjct: 281 SWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGK--YIHL 338
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ KFE I C D ++ +L+D YAKC + ++
Sbjct: 339 LIDKFE-------------INC---------------DLVLETALVDMYAKCGSIDLALQ 370
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +++ +++ +WNA++ G A+ G E+ +L D+ME + P+ ++ +L AC+
Sbjct: 371 VFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQME--HDKLMPDDVTFIALLCACSHA 428
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V G A+ +++ + C ++ R+ +V D
Sbjct: 429 GLVDEGLAMF-QAMKNKFQIEPRMEHYGC------------------VVDLLCRARKVDD 469
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPAC 298
AL + ++ +K N+V ++L AC
Sbjct: 470 ALAFIENM---PIKANSVLWATLLGAC 493
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 11/121 (9%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
+F Q+ D + N++I + RS +A+ L ++ V + T VL AC +L A
Sbjct: 67 LFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGA 126
Query: 304 -----------LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
L G G+ FV NALI Y CG+ + +F +++V+WN+MI+
Sbjct: 127 VKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINA 186
Query: 353 Y 353
+
Sbjct: 187 H 187
>gi|297813827|ref|XP_002874797.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297320634|gb|EFH51056.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 748
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 157/346 (45%), Gaps = 55/346 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ + + EI+ L Y M D G+RPD + D +G+ ++ +
Sbjct: 212 SWNTMISGFAFVANMSEILKLLYRMRDDGLRPDQQTFGASLSVSGTMCDLEMGRMLHCQI 271
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F+G D + +LI Y KC + S+
Sbjct: 272 VGTGFDG------------------------------DMHLRTALITMYLKCGEEEASYR 301
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
I KD+V W M++G G E+ + EM +D+ I+ V+A+CAQ+
Sbjct: 302 VLETIPDKDVVCWTVMISGLMRLGRAEKALIVFSEMLHSGSDLSSEAIA--SVVASCAQL 359
Query: 212 KGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSII 260
LG ++HGYVLR L T CG + S +F +++ RD+V WN+II
Sbjct: 360 GSFDLGASVHGYVLRQGYTLDTPALNSFITMYAKCGHLDKSLILFERMNERDLVSWNAII 419
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKP-NTVTIVSVLPACLKLAALPQG-----------L 308
S + G + AL L ++ V+ +++T+VS+L AC ALP G +
Sbjct: 420 SGHAQHGDLCKALLLFEEMKFKTVQQVDSLTVVSLLQACSSAGALPVGRMIHCIVIRSFI 479
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ V AL+DMY +CG ++ +++ F + K++VSW +I+ YG
Sbjct: 480 RPCTLVDTALVDMYSKCGYLEAAQRCFNSITWKDVVSWGTLIAGYG 525
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/342 (24%), Positives = 150/342 (43%), Gaps = 57/342 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+G Y+ G + E +L M +G++P ++ SE+ +
Sbjct: 114 HWTAMIGCYSRAGIFGEACSLVKEMRFQGIKPSPVTFLEMLSGISEITQLQ--------- 164
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
C+ L +C D V NS+++ Y KC + +
Sbjct: 165 ---------CLHAFALVYGFEC---------------DIAVMNSMLNLYCKCDRVGDAKE 200
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +++Q+D+VSWN M++G+A E+ LL M ++P+ + L+ +
Sbjct: 201 LFDQMEQRDMVSWNTMISGFAFVANMSEILKLLYRMR--DDGLRPDQQTFGASLSVSGTM 258
Query: 212 KGVKLGKAIH----GYVLRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+++G+ +H G +HL TA CG S V + +DVV W +I
Sbjct: 259 CDLEMGRMLHCQIVGTGFDGDMHLRTALITMYLKCGEEEASYRVLETIPDKDVVCWTVMI 318
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLG 309
S +R G+ AL + +++ + ++ I SV+ +C +L + L QG
Sbjct: 319 SGLMRLGRAEKALIVFSEMLHSGSDLSSEAIASVVASCAQLGSFDLGASVHGYVLRQGYT 378
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ N+ I MY +CG + KS +F M ++LVSWN +IS
Sbjct: 379 LDTPALNSFITMYAKCGHLDKSLILFERMNERDLVSWNAIIS 420
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 137/292 (46%), Gaps = 43/292 (14%)
Query: 28 EVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDV 87
+V C WT M+ LG E+ + +F M+ G V +C++L + +G V
Sbjct: 310 DVVC-WTVMISGLMRLGRAEKALIVFSEMLHSGSDLSSEAIASVVASCAQLGSFDLGASV 368
Query: 88 YDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147
+ Y++ + + P L NS I YAKC +L
Sbjct: 369 HGYVLRQGY----TLDTPAL--------------------------NSFITMYAKCGHLD 398
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
S F ++ ++DLVSWNA+++G+A G + L +EM+ +T Q +++++ +L A
Sbjct: 399 KSLILFERMNERDLVSWNAIISGHAQHGDLCKALLLFEEMK-FKTVQQVDSLTVVSLLQA 457
Query: 208 CAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVW 256
C+ + +G+ IH V+R I + + CG++ + FN ++ +DVV W
Sbjct: 458 CSSAGALPVGRMIHCIVIRSFIRPCTLVDTALVDMYSKCGYLEAAQRCFNSITWKDVVSW 517
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
++I+ + G+ AL++ + + +KPN V ++VL +C + QGL
Sbjct: 518 GTLIAGYGFHGKGDIALEIYSEFLHFGMKPNHVIFLAVLSSCSHNGMVQQGL 569
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/327 (23%), Positives = 149/327 (45%), Gaps = 51/327 (15%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G ++++++ F M+ + PD F P + KAC+ L+ G ++ ++ F ++ +
Sbjct: 25 GDHKQVLSTFSSMLANKLLPDTFTFPSLLKACTSLQLLSFGLSIHQKVLVNGFSSDSYIS 84
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
L++L+ K G + +F+EM + +D+V
Sbjct: 85 SSLVNLYAKFGLLGHARKVFDEM------------------------------RDRDVVH 114
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA---I 220
W AM+ Y+ G E +L+ EM ++P+ ++ +L+ +++ ++ A +
Sbjct: 115 WTAMIGCYSRAGIFGEACSLVKEMRF--QGIKPSPVTFLEMLSGISEITQLQCLHAFALV 172
Query: 221 HGY-----VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDL 275
+G+ V+ ++L C V + +F+Q+ RD+V WN++IS F + + L L
Sbjct: 173 YGFECDIAVMNSMLNLYCKCDRVGDAKELFDQMEQRDMVSWNTMISGFAFVANMSEILKL 232
Query: 276 LRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTG----SFVWNALIDMYGR 324
L + ++P+ T + L + L G +GTG + ALI MY +
Sbjct: 233 LYRMRDDGLRPDQQTFGASLSVSGTMCDLEMGRMLHCQIVGTGFDGDMHLRTALITMYLK 292
Query: 325 CGAIQKSRKIFVLMPHKNLVSWNVMIS 351
CG + S ++ +P K++V W VMIS
Sbjct: 293 CGEEEASYRVLETIPDKDVVCWTVMIS 319
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 8/108 (7%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
LV+ +L+D Y+KC YL+ + F+ I KD+VSW ++AGY G + + E +
Sbjct: 484 LVDTALVDMYSKCGYLEAAQRCFNSITWKDVVSWGTLIAGYGFHGKGDIALEIYS--EFL 541
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR------HHIHLS 232
M+PN + VL++C+ V+ G I ++R +H HL+
Sbjct: 542 HFGMKPNHVIFLAVLSSCSHNGMVQQGLKIFSSMVRDFGVEPNHEHLA 589
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 11/109 (10%)
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW 315
+NS I+ G L ++ + P+T T S+L AC L L GL V
Sbjct: 14 FNSHINHLSSHGDHKQVLSTFSSMLANKLLPDTFTFPSLLKACTSLQLLSFGLSIHQKVL 73
Query: 316 -----------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
++L+++Y + G + +RK+F M +++V W MI Y
Sbjct: 74 VNGFSSDSYISSSLVNLYAKFGLLGHARKVFDEMRDRDVVHWTAMIGCY 122
>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Glycine max]
Length = 923
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 92/352 (26%), Positives = 161/352 (45%), Gaps = 53/352 (15%)
Query: 24 SQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRV 83
S L + +W +++ Y + +N F M + G +PD + A +
Sbjct: 308 SMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLK 367
Query: 84 GKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKC 143
GK+V+ Y I +GL D + + N+L+D YAKC
Sbjct: 368 GKEVHAYAIR--------------------------NGL----DSNMQIGNTLVDMYAKC 397
Query: 144 RYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSG 203
+K F + +KDL+SW ++AGYA F E NL ++++ D+ P I
Sbjct: 398 CCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMI--GS 455
Query: 204 VLAACAQVKGVKLGKAIHGYVLRHH----------IHLSTACGFVICSCSVFNQLSTRDV 253
VL AC+ +K + IHGYV + +++ G + + F + ++D+
Sbjct: 456 VLRACSGLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDI 515
Query: 254 VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF 313
V W S+I+ V +G V+AL+L + N++P+++ I+S L A L++L +G F
Sbjct: 516 VSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGF 575
Query: 314 -----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ ++L+DMY CG ++ SRK+F + ++L+ W MI+ G
Sbjct: 576 LIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANG 627
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 153/347 (44%), Gaps = 56/347 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W ++MG + G Y E + L+ M GV D P V KAC L + R+G +++
Sbjct: 112 SWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHG-- 169
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ +KCG E V N+LI Y KC L +
Sbjct: 170 -----------------VAVKCGYGEFV-----------FVCNALIAMYGKCGDLGGARV 201
Query: 152 KFSKI--KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F I +++D VSWN++++ + G E +L M+ + + NT + L
Sbjct: 202 LFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQ--EVGVASNTYTFVAALQGVE 259
Query: 210 QVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
VKLG IHG VL+ + I + CG + + VF + RD V WN+
Sbjct: 260 DPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNT 319
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQG 307
++S V++ DAL+ RD+ + KP+ V++++++ A + A+ G
Sbjct: 320 LLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNG 379
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L + + N L+DMY +C ++ F M K+L+SW +I+ Y
Sbjct: 380 LDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYA 426
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 80/336 (23%), Positives = 153/336 (45%), Gaps = 65/336 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G +VHA+ I G++ +G+ L++++ +WT+++ Y
Sbjct: 368 GKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQ 427
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
++ E +NLF + KG+ D + V +ACS LK ++++ Y+
Sbjct: 428 NEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVF---------- 477
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
KR L D+ ++ N++++ Y + ++ + F I+ KD+V
Sbjct: 478 KRDLADIMLQ---------------------NAIVNVYGEVGHIDYARRAFESIRSKDIV 516
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW +M+ G E L ++ QT++QP++I++ L+A A + +K GK IHG
Sbjct: 517 SWTSMITCCVHNGLPVEALELFYSLK--QTNIQPDSIAIISALSATANLSSLKKGKEIHG 574
Query: 223 YVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+++R L CG V S +F+ + RD+++W S+I+A G
Sbjct: 575 FLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNK 634
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
A+ L + + NV P+ +T +++L AC + +G
Sbjct: 635 AIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEG 670
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 113/240 (47%), Gaps = 26/240 (10%)
Query: 136 LIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ 195
L+ Y KC L+ + F ++ ++ + SWNA++ + G E L +M ++ +
Sbjct: 85 LVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAI- 143
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSV 244
+ + VL AC + +LG IHG +V I + CG + + +
Sbjct: 144 -DACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVL 202
Query: 245 FN--QLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL-----PA 297
F+ + D V WNSIISA V G ++AL L R + V NT T V+ L P+
Sbjct: 203 FDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPS 262
Query: 298 CLKL------AALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+KL A L +V NALI MY +CG ++ + ++F M ++ VSWN ++S
Sbjct: 263 FVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLS 322
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 91/172 (52%), Gaps = 22/172 (12%)
Query: 204 VLAACAQVKGVKLGKAIHGYVLRHHIHLSTA---------CGFVICSCSVFNQLSTRDVV 254
+L C K + G+ +H +L+ H+ A CG + + VF+++S R +
Sbjct: 52 LLDLCVAAKALPQGQQLHALLLKSHLSAFLATKLVLMYGKCGSLRDAVKVFDEMSERTIF 111
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------A 303
WN+++ AFV SG+ ++A++L +D+ V V + T SVL AC L A
Sbjct: 112 SWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVA 171
Query: 304 LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIF--VLMPHKNLVSWNVMISVY 353
+ G G FV NALI MYG+CG + +R +F ++M ++ VSWN +IS +
Sbjct: 172 VKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAH 223
>gi|334185017|ref|NP_186807.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546765|sp|Q9SS97.2|PP205_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g01580
gi|332640170|gb|AEE73691.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 660
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 84/342 (24%), Positives = 166/342 (48%), Gaps = 52/342 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +++ + +EE++ F M +PD+F P KAC EL++ G+ ++ ++
Sbjct: 27 QWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYGEMIHGFV 86
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ ++T G D V +SLI Y KC + +
Sbjct: 87 -----------------------KKDVTLG------SDLYVGSSLIYMYIKCGRMIEALR 117
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++++ D+V+W++M++G+ G + M M +D+ P+ ++L +++AC ++
Sbjct: 118 MFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVM-ASDVTPDRVTLITLVSACTKL 176
Query: 212 KGVKLGKAIHGYVLRHHIH--LSTACGFVIC---------SCSVFNQLSTRDVVVWNSII 260
+LG+ +HG+V+R LS + C + ++F ++ +DV+ W+++I
Sbjct: 177 SNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVI 236
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------- 313
+ +V++G +AL + D++ +PN T++ VL AC L QG T
Sbjct: 237 ACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLE 296
Query: 314 ----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
V AL+DMY +C + +++ +F +P K++VSW +IS
Sbjct: 297 TEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALIS 338
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/347 (25%), Positives = 158/347 (45%), Gaps = 56/347 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
W+SM+ + G + V F M+ V PD + AC++L + R+G+ V+ +
Sbjct: 129 TWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGF 188
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+I F D + NSL++ YAK R K +
Sbjct: 189 VIRRGF------------------------------SNDLSLVNSLLNCYAKSRAFKEAV 218
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F I +KD++SW+ ++A Y G E LL +M+ +PN ++ VL ACA
Sbjct: 219 NLFKMIAEKDVISWSTVIACYVQNGAAAEA--LLVFNDMMDDGTEPNVATVLCVLQACAA 276
Query: 211 VKGVKLGKAIHGYVLRH----HIHLSTACGFVICSC-------SVFNQLSTRDVVVWNSI 259
++ G+ H +R + +STA + C +VF+++ +DVV W ++
Sbjct: 277 AHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVAL 336
Query: 260 ISAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPACLKLAALPQ-----------G 307
IS F +G +++ +++ N +P+ + +V VL +C +L L Q G
Sbjct: 337 ISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYG 396
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ F+ +L+++Y RCG++ + K+F + K+ V W +I+ YG
Sbjct: 397 FDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGYG 443
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 153/332 (46%), Gaps = 55/332 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W++++ Y G E + +F M+D G P+ V +AC+ D G+ ++
Sbjct: 231 SWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHE-- 288
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ I GL E+ V+ +L+D Y KC + ++
Sbjct: 289 ------------------------LAIRKGLETEVK----VSTALVDMYMKCFSPEEAYA 320
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS+I +KD+VSW A+++G+ L G M +++ + +P+ I + VL +C+++
Sbjct: 321 VFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIM-LLENNTRPDAILMVKVLGSCSEL 379
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ K H YV+++ + L + CG + + VFN ++ +D VVW S+I
Sbjct: 380 GFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLI 439
Query: 261 SAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN--- 316
+ + G+ AL+ ++ ++ VKPN VT +S+L AC + +GL + N
Sbjct: 440 TGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVNDYR 499
Query: 317 ---------ALIDMYGRCGAIQKSRKIFVLMP 339
L+D+ GR G + + +I MP
Sbjct: 500 LAPNLEHYAVLVDLLGRVGDLDTAIEITKRMP 531
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 118/225 (52%), Gaps = 26/225 (11%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ ++ L WN +L + EEV L M + + +P+ +L L AC +++
Sbjct: 17 FGEMTKRSLYQWNTLLKSLSREKQWEEV--LYHFSHMFRDEEKPDNFTLPVALKACGELR 74
Query: 213 GVKLGKAIHGYVLR------------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
V G+ IHG+V + I++ CG +I + +F++L D+V W+S++
Sbjct: 75 EVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMV 134
Query: 261 SAFVRSGQVVDALDLLRDVIVA-NVKPNTVTIVSVLPACLKLA-----------ALPQGL 308
S F ++G A++ R +++A +V P+ VT+++++ AC KL+ + +G
Sbjct: 135 SGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGF 194
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ N+L++ Y + A +++ +F ++ K+++SW+ +I+ Y
Sbjct: 195 SNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACY 239
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 12/120 (10%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
+F +++ R + WN+++ + R Q + L + KP+ T+ L AC +L
Sbjct: 16 MFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELRE 75
Query: 304 LPQG------------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ G LG+ +V ++LI MY +CG + ++ ++F + ++V+W+ M+S
Sbjct: 76 VNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVS 135
>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 780
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 164/332 (49%), Gaps = 25/332 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ + + G ++ + LF M K V+P+ V AC++ D G+ + Y+
Sbjct: 241 SWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYI 300
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSH 150
+ F + + +LD+++KCG + LF +M ++D + +++D +AK +H
Sbjct: 301 ENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAH 360
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
C F + K +WNA+++ Y G +L EM++ D +P+ ++L L A AQ
Sbjct: 361 CIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQL-SKDAKPDEVTLICALCASAQ 419
Query: 211 VKGVKLGKAIHGYVLRHHI----HLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ + G IH Y+ +H I HL+T+ CG + + VF+ + +DV VW+++
Sbjct: 420 LGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAM 479
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------LG 309
I A GQ ALDL ++ A +KPN VT ++L AC + +G G
Sbjct: 480 IGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYG 539
Query: 310 TGSFVWN--ALIDMYGRCGAIQKSRKIFVLMP 339
+ + ++D++GR G ++K+ MP
Sbjct: 540 IVPQIQHYVCVVDIFGRAGLLEKAASFIEKMP 571
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 163/349 (46%), Gaps = 89/349 (25%)
Query: 63 PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGL 122
P+ F P ++KA S LK +G ++ +I + ++S L
Sbjct: 171 PNKFTFPFLFKAASRLKVLHLGSVLHGMVI----------------------KASLSSDL 208
Query: 123 FEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTN 182
F + NSLI+FY ++H F+ + KD+VSWNAM+ +ALGG ++
Sbjct: 209 F--------ILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALL 260
Query: 183 LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA---- 234
L EMEM D++PN I++ VL+ACA+ ++ G+ I Y+ H+ L+ A
Sbjct: 261 LFQEMEM--KDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDM 318
Query: 235 ---CGFVICSCSVFNQLSTRDVV-------------------------------VWNSII 260
CG + + +FN++S +D+V WN++I
Sbjct: 319 YVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALI 378
Query: 261 SAFVRSGQVVDALDLLRDVIVA-NVKPNTVTIVSVLPACLKLAALPQG-----------L 308
SA+ ++G+ AL L ++ ++ + KP+ VT++ L A +L A+ G +
Sbjct: 379 SAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDI 438
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI---SVYG 354
+ +L+DMY +CG + K+ ++F + K++ W+ MI ++YG
Sbjct: 439 NLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYG 487
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 112/221 (50%), Gaps = 25/221 (11%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ-PNTISLSGVLAACAQV 211
F++I Q +L WN ++ GYA + + L + M+ + + PN + + A +++
Sbjct: 129 FNQIPQPNLYCWNTLIRGYASSS--DPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRL 186
Query: 212 KGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
K + LG +HG ++L I+ + G + VF + +DVV WN++I
Sbjct: 187 KVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMI 246
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW----- 315
+AF G AL L +++ + +VKPN +T+VSVL AC K L G S++
Sbjct: 247 NAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFT 306
Query: 316 ------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
NA++DMY +CG I ++ +F M K++VSW M+
Sbjct: 307 EHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTML 347
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 78/183 (42%), Gaps = 25/183 (13%)
Query: 197 NTISLSGVLAACAQVKGVKLGKAIHGYVLRHH--------IHLSTACGFVICSC-----S 243
N + + +L Q K IH ++LR L TA CSC +
Sbjct: 68 NEVESTNILEFIDQCTNTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKN 127
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDA-LDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
VFNQ+ ++ WN++I + S + L L + + PN T + A +L
Sbjct: 128 VFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLK 187
Query: 303 ALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
L G L + F+ N+LI+ YG GA + ++F MP K++VSWN MI+
Sbjct: 188 VLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMIN 247
Query: 352 VYG 354
+
Sbjct: 248 AFA 250
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 106/406 (26%), Positives = 195/406 (48%), Gaps = 58/406 (14%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G +VH+H+I G E F+ + L+ ++ ++ +M+
Sbjct: 127 LEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKG 186
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKD----VYDYMISIK 95
Y + E + LF M + G+ PD F ++ CS L + VGK VY + SI
Sbjct: 187 YAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSI- 245
Query: 96 FEGNACVKRPLLDLFIKCGRMEITSGLFEEM--DQDFLVNNSLIDFYAKCRYLKVSHCKF 153
+ N +K ++D++ KCG + I +F M + +S++ YA+C + V+ F
Sbjct: 246 -DSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLF 304
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG 213
+ + ++D++SW AM++GY+ G E L EME + ++P+ ++L VL+ACA++
Sbjct: 305 NHMHERDVISWTAMISGYSQAGQCSEALELFKEMEAL--GIKPDEVTLVAVLSACARLGA 362
Query: 214 VKLGKAI-HGY----VLRHHIHLSTA-------CGFVICSCSVFNQL--STRDVVVWNSI 259
LGK + H Y V + L+ A CG + + +F ++ + + V+NS+
Sbjct: 363 FDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSM 422
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA-- 317
I+ + G A+ + R++I +KP+ VT V VL AC + +G ++NA
Sbjct: 423 IAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYG 482
Query: 318 ----------LIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
++D+ GR G ++++ + MP + N V W ++S
Sbjct: 483 IKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSA 528
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 102/414 (24%), Positives = 174/414 (42%), Gaps = 114/414 (27%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC------------------------NWTSMMGM 39
G+Q+HA IV G+ F S+L+ F W +M+
Sbjct: 25 GLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMIRG 84
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRP-DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
Y+ E + L+ MI KG+ P ++F P + +C+ L G +V+ ++I FE
Sbjct: 85 YSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFES 144
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
+ V+ L+ L+ G + + LF+E SL+
Sbjct: 145 DLFVRNALIHLYSVFGNLNLARTLFDE---------SLV--------------------- 174
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+DLVS+N M+ GYA E L EM+ + + P+ + + + C+ + +GK
Sbjct: 175 RDLVSYNTMIKGYAEVNQPESALCLFGEMQ--NSGILPDEFTFVALFSVCSVLNEPNVGK 232
Query: 219 AIHGYVLRH------HIHLSTA----------------------------------CGFV 238
IH V ++ +I L +A CG+
Sbjct: 233 QIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYA 292
Query: 239 IC-----SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
C + +FN + RDV+ W ++IS + ++GQ +AL+L +++ +KP+ VT+V+
Sbjct: 293 RCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVA 352
Query: 294 VLPACLKLAALPQG-------LGTGSFVWN-----ALIDMYGRCGAIQKSRKIF 335
VL AC +L A G + G F N A++DMY +CG+I + +IF
Sbjct: 353 VLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIF 406
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 108/258 (41%), Gaps = 59/258 (22%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDM-QPNTISLSGVLAACAQV 211
FS+I +L WN M+ GY+ E L M MI + PN + +L +CA++
Sbjct: 67 FSQIDCPNLFMWNTMIRGYSRSDNPREAIVLY--MSMIAKGIAPPNNFTFPFLLNSCARL 124
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ G +H ++++H IHL + G + + ++F++ RD+V +N++I
Sbjct: 125 SSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMI 184
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC---------------------- 298
+ Q AL L ++ + + P+ T V++ C
Sbjct: 185 KGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRS 244
Query: 299 ------LKLAAL-----------------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIF 335
LK A + G + W++++ Y RCG I +RK+F
Sbjct: 245 IDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLF 304
Query: 336 VLMPHKNLVSWNVMISVY 353
M ++++SW MIS Y
Sbjct: 305 NHMHERDVISWTAMISGY 322
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 12/123 (9%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV-KPNTVTIVSVLPACLKLA 302
+F+Q+ ++ +WN++I + RS +A+ L +I + PN T +L +C +L+
Sbjct: 66 LFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLS 125
Query: 303 ALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+L G + FV NALI +Y G + +R +F ++LVS+N MI
Sbjct: 126 SLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIK 185
Query: 352 VYG 354
Y
Sbjct: 186 GYA 188
>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g15510, chloroplastic; Flags: Precursor
gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 866
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 162/347 (46%), Gaps = 63/347 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W ++G Y GY++E + L++ M+ GV+PD + P V + C + D GK+V+ +
Sbjct: 162 SWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVH 221
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
++ +E D V N+LI Y KC +K +
Sbjct: 222 VVRYGYE------------------------------LDIDVVNALITMYVKCGDVKSAR 251
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ ++D++SWNAM++GY G E L M + D P+ ++L+ V++AC
Sbjct: 252 LLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVD--PDLMTLTSVISACEL 309
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVICSC---------------SVFNQLSTRDVVV 255
+ +LG+ IH YV I A +C+ +F+++ +D+V
Sbjct: 310 LGDRRLGRDIHAYV----ITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVS 365
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-- 313
W ++IS + + A+D R + +VKP+ +T+ +VL AC L L G+
Sbjct: 366 WTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAI 425
Query: 314 ---------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
V N LI+MY +C I K+ IF +P KN++SW +I+
Sbjct: 426 KARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIA 472
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/393 (24%), Positives = 174/393 (44%), Gaps = 77/393 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G +VH H++ G EL + + L+ ++ +W +M+ Y
Sbjct: 215 GKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFE 274
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G E + LF+ M V PD V AC L D R+G+D++ Y+I+ F
Sbjct: 275 NGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFA----- 329
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
D V NSL Y + + FS++++KD+V
Sbjct: 330 -------------------------VDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIV 364
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW M++GY ++ + M+ Q ++P+ I+++ VL+ACA + + G +H
Sbjct: 365 SWTTMISGYEYNFLPDKAIDTYRMMD--QDSVKPDEITVAAVLSACATLGDLDTGVELHK 422
Query: 223 YVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
++ I++ + C + + +F+ + ++V+ W SII+ + + +
Sbjct: 423 LAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFE 482
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWNALID 320
AL LR + + ++PN +T+ + L AC ++ AL G+G F+ NAL+D
Sbjct: 483 ALIFLRQMKMT-LQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLD 541
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
MY RCG + + F K++ SWN++++ Y
Sbjct: 542 MYVRCGRMNTAWSQFN-SQKKDVTSWNILLTGY 573
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 109/223 (48%), Gaps = 23/223 (10%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F K+ +++L SWN ++ GYA G+ +E L M + ++P+ + VL C +
Sbjct: 152 FGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWV-GGVKPDVYTFPCVLRTCGGIP 210
Query: 213 GVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ GK +H +V+R+ L CG V + +F+++ RD++ WN++IS
Sbjct: 211 DLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMIS 270
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGT 310
+ +G + L+L + +V P+ +T+ SV+ AC L + G
Sbjct: 271 GYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAV 330
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V N+L MY G+ +++ K+F M K++VSW MIS Y
Sbjct: 331 DISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGY 373
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 20/153 (13%)
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
GV+LG A +R G ++ + VF ++S R++ WN ++ + + G +A
Sbjct: 128 GVELGNAFLAMFVRF--------GNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEA 179
Query: 273 LDLL-RDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW-----------NALID 320
+ L R + V VKP+ T VL C + L +G V NALI
Sbjct: 180 MCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALIT 239
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
MY +CG ++ +R +F MP ++++SWN MIS Y
Sbjct: 240 MYVKCGDVKSARLLFDRMPRRDIISWNAMISGY 272
>gi|147779768|emb|CAN71727.1| hypothetical protein VITISV_003014 [Vitis vinifera]
Length = 1167
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 90/333 (27%), Positives = 160/333 (48%), Gaps = 55/333 (16%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G +E+++ ++ G D F P V KACS L + + V+ ++ FE N
Sbjct: 324 GLFEDVLCVYLKCRVLGCPSDDFTFPFVIKACSALGAVWIAEGVHCIVLRTAFEEN---- 379
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
++ +L+DFYAK + + KI Q DLV+
Sbjct: 380 --------------------------LVIQTALVDFYAKTGRMVKARLVLDKISQPDLVT 413
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
WNA+++GY+L GF +EV +L ++++ ++PN + + ++ C ++K + +GK+IHG+
Sbjct: 414 WNALISGYSLNGFDKEVFEVL--RQILEMGLKPNVSTFASIIPLCTRMKCLDIGKSIHGF 471
Query: 224 VLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
V++ I + G + + +F+ + ++VV+WNS+ISA+ ++ + +A
Sbjct: 472 VVKSGFSSDEFLTPALISMYAGGGNLFIARDLFDSAAEKNVVIWNSMISAYAQNQKSSEA 531
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDM 321
+ + ++ AN++PN VT VS++P C A G L + V AL+ M
Sbjct: 532 FKMFQQMLKANMQPNVVTFVSIIPCCENSANFWXGKSLHAHVMKYRLDSQLSVATALLSM 591
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
Y + G + IF MP K + MIS YG
Sbjct: 592 YAKLGDXNSAXFIFYQMPRKTSYR-DSMISGYG 623
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 122/243 (50%), Gaps = 27/243 (11%)
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
N+LI Y C + F + + +VSWNA++ GY + EV + +MI
Sbjct: 757 NALISMYFNCGDINAGKFLFEVMPWRSIVSWNALITGYRFHYLQNEV--MASFCQMIXEG 814
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCS---------- 243
+PN ++L +L +C + GK+IH + +R + + T + S
Sbjct: 815 QKPNYVTLLNLLPSCXTLLQ---GKSIHAFAVRTGVIVETPIITSLISMYARFENINSFI 871
Query: 244 -VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
+F D+ +WN+I+S +V++ +++ +++ A V+P+ +T +S++ AC++L+
Sbjct: 872 FLFEMGGKEDIALWNAIMSVYVQTKNAKESVTFFCELLHARVEPDYITFLSLISACVQLS 931
Query: 303 AL-----------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+L +G + NALID++ RCG I ++KIF + K+ VSW+ MI+
Sbjct: 932 SLNLSNSVMAYVIQKGFDKHIVISNALIDLFARCGNISIAKKIFEGLSSKDAVSWSTMIN 991
Query: 352 VYG 354
YG
Sbjct: 992 GYG 994
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 83/433 (19%), Positives = 168/433 (38%), Gaps = 82/433 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+++G +H ++ G FL L+ ++ W SM+
Sbjct: 462 LDIGKSIHGFVVKSGFSSDEFLTPALISMYAGGGNLFIARDLFDSAAEKNVVIWNSMISA 521
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y E +F M+ ++P+ + C ++ GK ++ +++ + +
Sbjct: 522 YAQNQKSSEAFKMFQQMLKANMQPNVVTFVSIIPCCENSANFWXGKSLHAHVMKYRLDSQ 581
Query: 100 ACVKRPLLDLFIKCGRMEITSGLF------------------------------------ 123
V LL ++ K G +F
Sbjct: 582 LSVATALLSMYAKLGDXNSAXFIFYQMPRKTSYRDSMISGYGIMSMGRPFFWVRLLMHLA 641
Query: 124 ----EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREE 179
+E D ++N+L+ FY+ C L S F K+ ++ +SWN +++G G ++
Sbjct: 642 IKTGKEFDSXLNISNALLAFYSDCGKLSSSFKLFQKMPLRNAISWNTLISGCVHNGDTKK 701
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----------- 228
LL +M+ Q M+ + ++L ++ C + + G +HGY ++
Sbjct: 702 AVALLHKMQ--QEKMELDLVTLISIIPICRVXENLIQGMTLHGYAIKTGFACDVSLVNAL 759
Query: 229 IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288
I + CG + +F + R +V WN++I+ + + + +I KPN
Sbjct: 760 ISMYFNCGDINAGKFLFEVMPWRSIVSWNALITGYRFHYLQNEVMASFCQMIXEGQKPNY 819
Query: 289 VTIVSVLPACLKLA--------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340
VT++++LP+C L A+ G+ + + +LI MY R I +F +
Sbjct: 820 VTLLNLLPSCXTLLQGKSIHAFAVRTGVIVETPIITSLISMYARFENINSFIFLFEMGGK 879
Query: 341 KNLVSWNVMISVY 353
+++ WN ++SVY
Sbjct: 880 EDIALWNAIMSVY 892
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/324 (20%), Positives = 137/324 (42%), Gaps = 49/324 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +++ Y++ G+ +E+ + +++ G++P+ + C+ +K +GK ++ ++
Sbjct: 413 TWNALISGYSLNGFDKEVFEVLRQILEMGLKPNVSTFASIIPLCTRMKCLDIGKSIHGFV 472
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F + + L+ ++ G + I LF+
Sbjct: 473 VKSGFSSDEFLTPALISMYAGGGNLFIARDLFDSA------------------------- 507
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+K++V WN+M++ YA E + +M++ +MQPN ++ ++ C
Sbjct: 508 -----AEKNVVIWNSMISAYAQNQKSSEAFKMFQ--QMLKANMQPNVVTFVSIIPCCENS 560
Query: 212 KGVKLGKAIHGYVLRHHI--HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
GK++H +V+++ + LS A + S++ +L NS F + +
Sbjct: 561 ANFWXGKSLHAHVMKYRLDSQLSVATALL----SMYAKLGDX-----NSAXFIFYQMPRK 611
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF--VWNALIDMYGRCGA 327
RD +++ ++ L A+ G S + NAL+ Y CG
Sbjct: 612 TS----YRDSMISGYGIMSMGRPFFWVRLLMHLAIKTGKEFDSXLNISNALLAFYSDCGK 667
Query: 328 IQKSRKIFVLMPHKNLVSWNVMIS 351
+ S K+F MP +N +SWN +IS
Sbjct: 668 LSSSFKLFQKMPLRNAISWNTLIS 691
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/333 (21%), Positives = 143/333 (42%), Gaps = 59/333 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ Y E++ F MI +G +P++ + +C L GK ++ +
Sbjct: 786 SWNALITGYRFHYLQNEVMASFCQMIXEGQKPNYVTLLNLLPSCXTLLQ---GKSIHAFA 842
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ V+ P++ SLI YA+ +
Sbjct: 843 VRT----GVIVETPII--------------------------TSLISMYARFENINSFIF 872
Query: 152 KFSKIKQKDLVSWNAMLAGYA-LGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++D+ WNA+++ Y +E VT E++ ++P+ I+ +++AC Q
Sbjct: 873 LFEMGGKEDIALWNAIMSVYVQTKNAKESVTFFC---ELLHARVEPDYITFLSLISACVQ 929
Query: 211 VKGVKLGKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ + L ++ YV++ HI +S A CG + + +F LS++D V W+++
Sbjct: 930 LSSLNLSNSVMAYVIQKGFDKHIVISNALIDLFARCGNISIAKKIFEGLSSKDAVSWSTM 989
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-LGTGSFV---- 314
I+ + G AL LL + ++ +KP+ +T SVL AC + QG + S V
Sbjct: 990 INGYGLHGDSEAALALLSQMRLSGMKPDGITYASVLSACSHGGFIDQGWMIFNSMVEEGV 1049
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMPHK 341
+ ++D+ GR G + ++ +P K
Sbjct: 1050 PRRMEHYACMVDLLGRTGQLNEAYDFVEKLPCK 1082
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 112/271 (41%), Gaps = 63/271 (23%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W ++M +Y +E V F ++ V PD+ + AC +L + V Y+I
Sbjct: 885 WNAIMSVYVQTKNAKESVTFFCELLHARVEPDYITFLSLISACVQLSSLNLSNSVMAYVI 944
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F D+ +++N+LID +A+C + ++
Sbjct: 945 QKGF------------------------------DKHIVISNALIDLFARCGNISIAKKI 974
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + KD VSW+ M+ GY L G E LL +M + + M+P+ I+ + VL+AC+
Sbjct: 975 FEGLSSKDAVSWSTMINGYGLHGDSEAALALLSQMRL--SGMKPDGITYASVLSACS--- 1029
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQL----STRDVVVWNSIISAFVRSGQ 268
HG GF+ +FN + R + + ++ R+GQ
Sbjct: 1030 --------HG-------------GFIDQGWMIFNSMVEEGVPRRMEHYACMVDLLGRTGQ 1068
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ +A D + + KP+ + S+L AC+
Sbjct: 1069 LNEAYDFVEKL---PCKPSVSLLESLLXACI 1096
>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
Length = 1974
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 169/345 (48%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++G+ +G+ E+ + F M + GV PD+FV P V KAC L+ +GK V+ Y+
Sbjct: 1244 SWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYV 1303
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + F V L+D++ KCG +E +F+ M
Sbjct: 1304 LKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSM------------------------- 1338
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+K++V+WN+M+ GY G +E ++ +M + ++P ++++ L+A A +
Sbjct: 1339 -----VEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRV--EGIEPTRVTVASFLSASANL 1391
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCS-----------VFNQLSTRDVVVWNSII 260
+ GK H + + + L G I + VF+++ +DVV WN +I
Sbjct: 1392 DALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLI 1451
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----LKLAA------LPQGLG 309
S++V+ QV AL++ + N++ ++VT+ S+L A +KL + + L
Sbjct: 1452 SSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLE 1511
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ V N++IDMY +C I +RK+F ++LV WN +++ Y
Sbjct: 1512 SDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYA 1556
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 152/299 (50%), Gaps = 32/299 (10%)
Query: 77 ELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSL 136
E +D+++G ++Y ++ CV L + + +G F ++ V L
Sbjct: 1166 EFEDFQIGPEIYGELL------QGCVYERALHTGQQIHARILKNGDF--FAKNEYVETKL 1217
Query: 137 IDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP 196
+ FYAKC + +V+ F +++ +++ SW A++ GF E+ LL +EM + + P
Sbjct: 1218 VVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDA--LLGFIEMQENGVFP 1275
Query: 197 NTISLSGVLAACAQVKGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVF 245
+ L VL AC ++ + LGK +HGYVL+ + + CG + + VF
Sbjct: 1276 DNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVF 1335
Query: 246 NQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP 305
+ + ++VV WNS+I +V++G +A+D+ D+ V ++P VT+ S L A L AL
Sbjct: 1336 DSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALI 1395
Query: 306 QG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+G L + + +++I+ Y + G I+ + +F M K++V+WN++IS Y
Sbjct: 1396 EGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSY 1454
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/422 (22%), Positives = 188/422 (44%), Gaps = 86/422 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G Q HA I+ ++L LGS ++ + W ++ Y
Sbjct: 1397 GKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQ 1456
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+ +N+ +LM + +R D + A + + ++GK+ + Y I E + V
Sbjct: 1457 HHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVV 1516
Query: 103 KRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKC------------------ 143
++D++ KC R++ +F+ ++D ++ N+L+ YA+
Sbjct: 1517 ANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSV 1576
Query: 144 ---------------RYLKVSHCK--FSKIK----QKDLVSWNAMLAGYALGGFREEVTN 182
R +V+ K FS+++ Q +L++W +++G A GF E
Sbjct: 1577 PPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAIL 1636
Query: 183 LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA-------- 234
+M+ + ++P+ S++ VL AC + + G+AIHG++ RH LS
Sbjct: 1637 FFQKMQ--EAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVDM 1694
Query: 235 ---CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI 291
CG + + VF+ +S++++ ++N++ISA+ GQ V+AL L + + ++P+++T
Sbjct: 1695 YAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSITF 1754
Query: 292 VSVLPACLKLAALPQGLG-----TGSFVWNALIDMYG-------RCGAIQKSRKIFVLMP 339
S+L AC + +GL N +++ YG RCG + ++ ++ + MP
Sbjct: 1755 TSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILTMP 1814
Query: 340 HK 341
+
Sbjct: 1815 FQ 1816
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 101/466 (21%), Positives = 189/466 (40%), Gaps = 147/466 (31%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYN 41
LG VH +++ G C F+ S L++++ W SM+ Y
Sbjct: 1295 LGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYV 1354
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G +E +++FY M +G+ P A + L GK +G+A
Sbjct: 1355 QNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGK-----------QGHAI 1403
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ +D D ++ +S+I+FY+K ++ + FS++ +KD+
Sbjct: 1404 -------------------AILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDV 1444
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNTISLSGVLAACAQVKGVKLGKAI 220
V+WN +++ Y +V L+ +++++ ++ ++++LS +L+A A +KLGK
Sbjct: 1445 VTWNLLISSYVQ---HHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEG 1501
Query: 221 HGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISA------- 262
H Y +R + I + C + + VF+ + RD+V+WN++++A
Sbjct: 1502 HCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLS 1561
Query: 263 ----------------------------FVRSGQVVDALDLL------------------ 276
F+R+GQV +A D+
Sbjct: 1562 GEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTL 1621
Query: 277 -----------------RDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------ 313
+ + A ++P+ +I SVL AC + +L G F
Sbjct: 1622 ISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEF 1681
Query: 314 -----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V +L+DMY +CG+I +++K+F +M K L +N MIS Y
Sbjct: 1682 CLSVPVATSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYA 1727
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 114/244 (46%), Gaps = 32/244 (13%)
Query: 140 YAKCRYLKVSHCKFSKIKQKD------LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
+A + K + + +K+++KD S+ ++ G +E +LL EME D
Sbjct: 1112 FASVKSSKFASTRLAKLQEKDENRRSLYKSYFHHISSLCKDGHLQESVHLLSEMEF--ED 1169
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS-------------TACGFVIC 240
Q +L C + + G+ IH +L++ + C F
Sbjct: 1170 FQIGPEIYGELLQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEV 1229
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-- 298
+ +F++L R+V W +I+ R G DAL ++ V P+ + +VL AC
Sbjct: 1230 AVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGS 1289
Query: 299 LKLAALPQG-------LGTGS--FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L+L L +G +G G+ FV ++L+DMYG+CG ++ +RK+F M KN+V+WN M
Sbjct: 1290 LQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSM 1349
Query: 350 ISVY 353
I Y
Sbjct: 1350 IVGY 1353
>gi|242076082|ref|XP_002447977.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
gi|241939160|gb|EES12305.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
Length = 772
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 160/347 (46%), Gaps = 54/347 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTS++G+Y G E + LF M++ G++PD + + + GK + +
Sbjct: 287 SWTSLIGIYCWRGLIREAMELFQEMMESGLQPDDVLVSCLLSGLGNSGNVHGGKAFHAVI 346
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F N LV N+LI Y K + +
Sbjct: 347 MKRNFGDN------------------------------VLVGNALISMYGKFELVDNAGR 376
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQT-DMQPNTISLSGVLAACAQ 210
F + Q+D SWN M+ GY G + L EM+ T + + SL +++C++
Sbjct: 377 VFRLLHQRDADSWNLMIVGYCKAGCDVKCLELYREMQFRDTYEFLCDANSLVSAISSCSR 436
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTR-DVVVWNS 258
+ ++LG++ H Y ++H + ++ CG +C +F + DVV WN+
Sbjct: 437 LVELRLGRSAHCYSIKHWLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGDVVTWNT 496
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV---- 314
+IS++ G A+ L ++ + PN+ T+++V+ AC L AL +G S+V
Sbjct: 497 LISSYAHLGHSNTAVSLYDQMLTEGLTPNSTTLITVISACANLVALERGEKIHSYVKEMG 556
Query: 315 WN-------ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
W+ ALIDMY +CG + +R+IF M ++V+WNVMIS YG
Sbjct: 557 WDYDVSINTALIDMYAKCGQLGTARRIFDSMLQHDVVAWNVMISGYG 603
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 154/345 (44%), Gaps = 50/345 (14%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ ++ + +N M+ RP F P A +EL VG V+ Y
Sbjct: 78 WNSLIRTHHCASDFVAALNAHRRMLASSARPSPFTVPLAASAAAELGALGVGASVHAY-- 135
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
CV+ LL + G + + S SL+ YA+C ++ +
Sbjct: 136 --------CVRYGLL--AVDGGSVAVPS--------------SLVYMYARCGVVRDAVKL 171
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD--MQPNTISLSGVLAACAQ 210
F +++++D+V+W A+++G G + L EM + D +PN+ ++ L AC
Sbjct: 172 FEEMRERDVVAWTAVVSGCVRNGECGDGLRYLVEMVRLAGDGKARPNSRTMESGLEACGV 231
Query: 211 VKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSI 259
+ + G+ +HGY ++ + S + C +CS+F +L +DVV W S+
Sbjct: 232 LDELNSGRCLHGYAVKVGVGDSPMVISALFSMYSKCHSTEDACSLFPELPEKDVVSWTSL 291
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA-----------CLKLAALPQGL 308
I + G + +A++L ++++ + ++P+ V + +L + +
Sbjct: 292 IGIYCWRGLIREAMELFQEMMESGLQPDDVLVSCLLSGLGNSGNVHGGKAFHAVIMKRNF 351
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G V NALI MYG+ + + ++F L+ ++ SWN+MI Y
Sbjct: 352 GDNVLVGNALISMYGKFELVDNAGRVFRLLHQRDADSWNLMIVGY 396
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 127/254 (50%), Gaps = 29/254 (11%)
Query: 111 IKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH-CK-FSKIKQK-DLVSWNAM 167
++ GR + +D+D V N LI Y +C K H CK F K K D+V+WN +
Sbjct: 440 LRLGRSAHCYSIKHWLDEDSSVANVLIGMYGRCG--KFDHACKIFGLAKLKGDVVTWNTL 497
Query: 168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR- 226
++ YA G +L D+M + + PN+ +L V++ACA + ++ G+ IH YV
Sbjct: 498 ISSYAHLGHSNTAVSLYDQM--LTEGLTPNSTTLITVISACANLVALERGEKIHSYVKEM 555
Query: 227 ---HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL 276
+ + ++TA CG + + +F+ + DVV WN +IS + G+ AL+L
Sbjct: 556 GWDYDVSINTALIDMYAKCGQLGTARRIFDSMLQHDVVAWNVMISGYGMHGEAKQALELF 615
Query: 277 RDVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTGSFVWN-----ALIDMYGRC 325
+ ++KPN VT +++L AC L +G +G S N ++D+ G+
Sbjct: 616 GKMEGGSIKPNGVTFLAILSACCHSGLLEEGRQLFTRMGKYSLEPNLKHYACMVDLLGKS 675
Query: 326 GAIQKSRKIFVLMP 339
G +Q++ + + MP
Sbjct: 676 GHLQEAEDMVLAMP 689
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 32/189 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +++ Y LG+ V+L+ M+ +G+ P+ V AC+ L G+ ++ Y+
Sbjct: 493 TWNTLISSYAHLGHSNTAVSLYDQMLTEGLTPNSTTLITVISACANLVALERGEKIHSYV 552
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + D D +N +LID YAKC L +
Sbjct: 553 KEMGW------------------------------DYDVSINTALIDMYAKCGQLGTARR 582
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + Q D+V+WN M++GY + G ++ L +ME ++PN ++ +L+AC
Sbjct: 583 IFDSMLQHDVVAWNVMISGYGMHGEAKQALELFGKME--GGSIKPNGVTFLAILSACCHS 640
Query: 212 KGVKLGKAI 220
++ G+ +
Sbjct: 641 GLLEEGRQL 649
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 17/124 (13%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI------------ 291
F+ D +WNS+I + V AL+ R ++ ++ +P+ T+
Sbjct: 66 AFSACPRPDAFLWNSLIRTHHCASDFVAALNAHRRMLASSARPSPFTVPLAASAAAELGA 125
Query: 292 ----VSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
SV C++ L G+ + V ++L+ MY RCG ++ + K+F M +++V+W
Sbjct: 126 LGVGASVHAYCVRYGLLAVDGGSVA-VPSSLVYMYARCGVVRDAVKLFEEMRERDVVAWT 184
Query: 348 VMIS 351
++S
Sbjct: 185 AVVS 188
>gi|356502573|ref|XP_003520093.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Glycine max]
Length = 503
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 93/377 (24%), Positives = 175/377 (46%), Gaps = 73/377 (19%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCNWTSM---------------------MGMYNVLG 44
+ HA ++V G E F+ ++L++ + +++++ + +Y
Sbjct: 38 KAHAQVVVRGHEQDPFIAARLIDKYSHFSNLDHARKVFDNLSEPDVFCCNVVIKVYANAD 97
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
+ E + ++ M +G+ P+++ P V KAC EG + R
Sbjct: 98 PFGEALKVYDAMRWRGITPNYYTYPFVLKACGA-------------------EGASKKGR 138
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
+ +KCG MD D V N+L+ FYAKC+ ++VS F +I +D+VSW
Sbjct: 139 VIHGHAVKCG-----------MDLDLFVGNALVAFYAKCQDVEVSRKVFDEIPHRDIVSW 187
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
N+M++GY + G+ ++ L +M ++ P+ + VL A AQ + G IH Y+
Sbjct: 188 NSMISGYTVNGYVDDAILLFYDMLRDESVGGPDHATFVTVLPAFAQAADIHAGYWIHCYI 247
Query: 225 LRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
++ + L +A CG+V + ++F+++S R V+VW++II + G +AL
Sbjct: 248 VKTRMGLDSAVGTGLISLYSNCGYVRMARAIFDRISDRSVIVWSAIIRCYGTHGLAQEAL 307
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALIDMY 322
L R ++ A ++P+ V + +L AC L Q G+ + ++D+
Sbjct: 308 ALFRQLVGAGLRPDGVVFLCLLSACSHAGLLEQGWHLFNAMETYGVAKSEAHYACIVDLL 367
Query: 323 GRCGAIQKSRKIFVLMP 339
GR G ++K+ + MP
Sbjct: 368 GRAGDLEKAVEFIQSMP 384
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 115/254 (45%), Gaps = 30/254 (11%)
Query: 127 DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDE 186
+QD + LID Y+ L + F + + D+ N ++ YA E + D
Sbjct: 49 EQDPFIAARLIDKYSHFSNLDHARKVFDNLSEPDVFCCNVVIKVYANADPFGEALKVYDA 108
Query: 187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS-----------TAC 235
M + PN + VL AC K G+ IHG+ ++ + L C
Sbjct: 109 MRW--RGITPNYYTYPFVLKACGAEGASKKGRVIHGHAVKCGMDLDLFVGNALVAFYAKC 166
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL----DLLRDVIVANVKPNTVTI 291
V S VF+++ RD+V WNS+IS + +G V DA+ D+LRD V P+ T
Sbjct: 167 QDVEVSRKVFDEIPHRDIVSWNSMISGYTVNGYVDDAILLFYDMLRDESVGG--PDHATF 224
Query: 292 VSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340
V+VLPA + A + G +G S V LI +Y CG ++ +R IF +
Sbjct: 225 VTVLPAFAQAADIHAGYWIHCYIVKTRMGLDSAVGTGLISLYSNCGYVRMARAIFDRISD 284
Query: 341 KNLVSWNVMISVYG 354
++++ W+ +I YG
Sbjct: 285 RSVIVWSAIIRCYG 298
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 99/237 (41%), Gaps = 55/237 (23%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G +H H + CG++L F+G+ L+ + +W SM+ Y V
Sbjct: 137 GRVIHGHAVKCGMDLDLFVGNALVAFYAKCQDVEVSRKVFDEIPHRDIVSWNSMISGYTV 196
Query: 43 LGYYEEIVNLFYLMI-DKGV-RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
GY ++ + LFY M+ D+ V PDH V A ++ D G ++ Y++ + ++
Sbjct: 197 NGYVDDAILLFYDMLRDESVGGPDHATFVTVLPAFAQAADIHAGYWIHCYIVKTRMGLDS 256
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
V L+ L+ CG Y++++ F +I +
Sbjct: 257 AVGTGLISLYSNCG------------------------------YVRMARAIFDRISDRS 286
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
++ W+A++ Y G +E L +++ ++P+ + +L+AC+ ++ G
Sbjct: 287 VIVWSAIIRCYGTHGLAQEALALF--RQLVGAGLRPDGVVFLCLLSACSHAGLLEQG 341
>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 676
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 103/392 (26%), Positives = 175/392 (44%), Gaps = 75/392 (19%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNVLG 44
+H H++ G L +F G +L++ + W SM+ + G
Sbjct: 22 SLHTHILKSG-SLFSFFGHKLIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRG 80
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
+E + L+ M+ +GV PD + ++KA SE+ R G+ + + + FE
Sbjct: 81 KTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFE------- 133
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
+ D F+ G ++D YAK +K + F ++ KD+V +
Sbjct: 134 -VSDGFVATG---------------------IVDMYAKFGKMKDARFVFDRVLDKDVVLF 171
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
A++ GY G E + ++M + + ++PN +L+ VL +C + + GK IHG V
Sbjct: 172 TALIVGYNQRGLDGEALEVFEDM--VGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLV 229
Query: 225 LRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
++ + + + C V S VFN L+ V W S I V++G+ AL
Sbjct: 230 VKSGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIAL 289
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LGT--GSFVWNALIDMY 322
+ R++I ++ PN T S+L AC LA L G LG +V ALI +Y
Sbjct: 290 SMFREMIRCSISPNHFTFSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKYVDAALIHLY 349
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G+CG ++K+R +F + ++VS N MI Y
Sbjct: 350 GKCGNVEKARSVFESLTELDVVSINTMIYAYA 381
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 150/343 (43%), Gaps = 55/343 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
+T+++ YN G E + +F M+ ++P+ + V +C L D GK ++ ++
Sbjct: 171 FTALIVGYNQRGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVV 230
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
E + LL ++ KC +E + +F NSL YA SH
Sbjct: 231 KSGLESVVASQTSLLTMYSKCNMVEDSIKVF----------NSLA--YA-------SH-- 269
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
V+W + + G G REE+ L EMI+ + PN + S +L AC+ +
Sbjct: 270 ---------VTWTSFIVGLVQNG-REEIA-LSMFREMIRCSISPNHFTFSSILHACSSLA 318
Query: 213 GVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ G+ IH YV IHL CG V + SVF L+ DVV N++I
Sbjct: 319 MLEAGEQIHAVTVKLGVDGNKYVDAALIHLYGKCGNVEKARSVFESLTELDVVSINTMIY 378
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA---- 317
A+ ++G +AL+L + KPN VT +S+L AC + +G S + N
Sbjct: 379 AYAQNGFGHEALELFERMKKLGHKPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIE 438
Query: 318 --------LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+ID+ GR +++ + + +++ W +++
Sbjct: 439 LTRDHYTCMIDLLGRAKRFEEAAMLIEEGKNPDVIQWRTLLNA 481
>gi|6016735|gb|AAF01561.1|AC009325_31 hypothetical protein [Arabidopsis thaliana]
Length = 641
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/342 (24%), Positives = 166/342 (48%), Gaps = 52/342 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +++ + +EE++ F M +PD+F P KAC EL++ G+ ++ ++
Sbjct: 8 QWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYGEMIHGFV 67
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ ++T G D V +SLI Y KC + +
Sbjct: 68 -----------------------KKDVTLG------SDLYVGSSLIYMYIKCGRMIEALR 98
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++++ D+V+W++M++G+ G + M M +D+ P+ ++L +++AC ++
Sbjct: 99 MFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVM-ASDVTPDRVTLITLVSACTKL 157
Query: 212 KGVKLGKAIHGYVLRHHIH--LSTACGFVIC---------SCSVFNQLSTRDVVVWNSII 260
+LG+ +HG+V+R LS + C + ++F ++ +DV+ W+++I
Sbjct: 158 SNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVI 217
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------- 313
+ +V++G +AL + D++ +PN T++ VL AC L QG T
Sbjct: 218 ACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLE 277
Query: 314 ----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
V AL+DMY +C + +++ +F +P K++VSW +IS
Sbjct: 278 TEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALIS 319
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/347 (25%), Positives = 158/347 (45%), Gaps = 56/347 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
W+SM+ + G + V F M+ V PD + AC++L + R+G+ V+ +
Sbjct: 110 TWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGF 169
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+I F D + NSL++ YAK R K +
Sbjct: 170 VIRRGF------------------------------SNDLSLVNSLLNCYAKSRAFKEAV 199
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F I +KD++SW+ ++A Y G E LL +M+ +PN ++ VL ACA
Sbjct: 200 NLFKMIAEKDVISWSTVIACYVQNGAAAEA--LLVFNDMMDDGTEPNVATVLCVLQACAA 257
Query: 211 VKGVKLGKAIHGYVLRH----HIHLSTACGFVICSC-------SVFNQLSTRDVVVWNSI 259
++ G+ H +R + +STA + C +VF+++ +DVV W ++
Sbjct: 258 AHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVAL 317
Query: 260 ISAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPACLKLAALPQ-----------G 307
IS F +G +++ +++ N +P+ + +V VL +C +L L Q G
Sbjct: 318 ISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYG 377
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ F+ +L+++Y RCG++ + K+F + K+ V W +I+ YG
Sbjct: 378 FDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGYG 424
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 152/332 (45%), Gaps = 55/332 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W++++ Y G E + +F M+D G P+ V +AC+ D G+ ++
Sbjct: 212 SWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHE-- 269
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ I GL E+ V+ +L+D Y KC + ++
Sbjct: 270 ------------------------LAIRKGLETEVK----VSTALVDMYMKCFSPEEAYA 301
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS+I +KD+VSW A+++G+ L G M +++ + +P+ I + VL +C+++
Sbjct: 302 VFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIM-LLENNTRPDAILMVKVLGSCSEL 360
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ K H YV+++ + L + CG + + VFN ++ +D VVW S+I
Sbjct: 361 GFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLI 420
Query: 261 SAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN--- 316
+ + G+ AL+ ++ + VKPN VT +S+L AC + +GL + N
Sbjct: 421 TGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVNDYR 480
Query: 317 ---------ALIDMYGRCGAIQKSRKIFVLMP 339
L+D+ GR G + + +I MP
Sbjct: 481 LAPNLEHYAVLVDLLGRVGDLDTAIEITKRMP 512
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 116/222 (52%), Gaps = 26/222 (11%)
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
+ ++ L WN +L + EEV L M + + +P+ +L L AC +++ V
Sbjct: 1 MTKRSLYQWNTLLKSLSREKQWEEV--LYHFSHMFRDEEKPDNFTLPVALKACGELREVN 58
Query: 216 LGKAIHGYVLR------------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAF 263
G+ IHG+V + I++ CG +I + +F++L D+V W+S++S F
Sbjct: 59 YGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGF 118
Query: 264 VRSGQVVDALDLLRDVIVA-NVKPNTVTIVSVLPACLKLA-----------ALPQGLGTG 311
++G A++ R +++A +V P+ VT+++++ AC KL+ + +G
Sbjct: 119 EKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSND 178
Query: 312 SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ N+L++ Y + A +++ +F ++ K+++SW+ +I+ Y
Sbjct: 179 LSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACY 220
>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 646
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 89/341 (26%), Positives = 168/341 (49%), Gaps = 42/341 (12%)
Query: 50 VNLFY-LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLD 108
+ LFY +M D+ V P+ F P V KAC++ + GK ++ + F G+ V L+
Sbjct: 112 ITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVR 171
Query: 109 LFIKCGRMEITSGLF---------------EEMDQDFLVNNSLIDFYAKCRYLKVSHCKF 153
+++ CG M+ LF + D + ++ N +ID Y + K + F
Sbjct: 172 MYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLF 231
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG 213
K++Q+ +VSWN M++GY+L GF ++ + EM+ + D++PN ++L VL A +++
Sbjct: 232 DKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMK--KGDIRPNYVTLVSVLPAISRLGS 289
Query: 214 VKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISA 262
++LG+ +H Y I + + CG + + VF +L +V+ W+++I+
Sbjct: 290 LELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMING 349
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-------- 314
F GQ DA+D + A V+P+ V +++L AC + +G S +
Sbjct: 350 FAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEP 409
Query: 315 ----WNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMI 350
+ ++D+ GR G + ++ + + MP K + V W ++
Sbjct: 410 RIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALL 450
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 145/318 (45%), Gaps = 83/318 (26%)
Query: 109 LFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKC----RYLKVSHCKFSKIKQKDLVSW 164
+FIK G+M +D L ++ F A R L +H F+++ Q++ SW
Sbjct: 45 VFIKSGQM-----------RDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSW 93
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNTISLSGVLAACAQVKGVKLGKAIHG- 222
N ++ G++ + + + EM+ + ++PN + VL ACA+ ++ GK IHG
Sbjct: 94 NTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGL 153
Query: 223 ----------YVLRHHIHLSTACGFV---------------------------------- 238
+V+ + + + CGF+
Sbjct: 154 ALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNV 213
Query: 239 -------ICSCS----VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
+ C +F+++ R VV WN++IS + +G DA+++ R++ +++PN
Sbjct: 214 MIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPN 273
Query: 288 TVTIVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFV 336
VT+VSVLPA +L +L G+ + +ALIDMY +CG I+K+ +F
Sbjct: 274 YVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFE 333
Query: 337 LMPHKNLVSWNVMISVYG 354
+P +N+++W+ MI+ +
Sbjct: 334 RLPRENVITWSAMINGFA 351
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/290 (19%), Positives = 124/290 (42%), Gaps = 58/290 (20%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y++ G++++ V +F M +RP++ V A S L +G+ ++ Y
Sbjct: 241 SWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYA 300
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + L+D++ KCG +E +FE
Sbjct: 301 EDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFE--------------------------- 333
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
++ ++++++W+AM+ G+A+ G + + +M Q ++P+ ++ +L AC+
Sbjct: 334 ---RLPRENVITWSAMINGFAIHGQAGDAIDCF--CKMRQAGVRPSDVAYINLLTACSHG 388
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V+ G+ R+ + + G L R + + ++ RSG + +
Sbjct: 389 GLVEEGR-------RYFSQMVSVDG-----------LEPR-IEHYGCMVDLLGRSGLLDE 429
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDM 321
A + ++ +KP+ V ++L AC + + G V N L+DM
Sbjct: 430 AEEF---ILNMPIKPDDVIWKALLGAC----RMQGNVEMGKRVANILMDM 472
>gi|356521639|ref|XP_003529461.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
mitochondrial-like [Glycine max]
Length = 699
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 102/345 (29%), Positives = 165/345 (47%), Gaps = 50/345 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ Y E + LF M + V + F + AC++L GK V+ ++
Sbjct: 201 SWTSMIVAYVQNDCAREGLTLFNRMREAFVDGNEFTVGSLVSACTKLNWLHQGKWVHGFV 260
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I N+ + LL++++KCG ++ +F+E
Sbjct: 261 IKNGICVNSYLTTSLLNMYVKCGNIQDACKVFDESS------------------------ 296
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
S +DLVSW AM+ GY+ G+ L + + + + PN++++S +L++CAQ+
Sbjct: 297 --SSSYDRDLVSWTAMIVGYSQRGYPHLALELFKDKKW--SGILPNSVTVSSLLSSCAQL 352
Query: 212 KGVKLGKAIHGYVLR-----HHIH-----LSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+GK +HG ++ H + + CG V + VF + +DVV WNSIIS
Sbjct: 353 GNSVMGKLLHGLAVKCGLDDHPVRNALVDMYAKCGVVSDARCVFEAMLEKDVVSWNSIIS 412
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGT 310
FV+SG+ +AL+L R + + P+ VT+V +L AC L AL GL
Sbjct: 413 GFVQSGEAYEALNLFRRMGLELFSPDAVTVVGILSACASLGMLHLGCSVHGLALKDGLVV 472
Query: 311 GS-FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
S +V AL++ Y +CG + +R +F M KN V+W MI YG
Sbjct: 473 SSIYVGTALLNFYAKCGDARAARMVFDSMGEKNAVTWGAMIGGYG 517
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/338 (25%), Positives = 153/338 (45%), Gaps = 57/338 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ Y+ GY + LF G+ P+ + +C++L
Sbjct: 306 SWTAMIVGYSQRGYPHLALELFKDKKWSGILPNSVTVSSLLSSCAQL------------- 352
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
GN+ + + L L +KCG D V N+L+D YAKC + + C
Sbjct: 353 ------GNSVMGKLLHGLAVKCGL------------DDHPVRNALVDMYAKCGVVSDARC 394
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +KD+VSWN++++G+ G E NL M + P+ +++ G+L+ACA +
Sbjct: 395 VFEAMLEKDVVSWNSIISGFVQSGEAYEALNLFRRMGL--ELFSPDAVTVVGILSACASL 452
Query: 212 KGVKLGKAIHGYVLR-----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ LG ++HG L+ I++ TA CG + VF+ + ++ V W ++
Sbjct: 453 GMLHLGCSVHGLALKDGLVVSSIYVGTALLNFYAKCGDARAARMVFDSMGEKNAVTWGAM 512
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGS 312
I + G +L L RD++ V+PN V ++L AC + +G G +
Sbjct: 513 IGGYGMQGDGNGSLTLFRDMLEELVEPNEVVFTTILAACSHSGMVGEGSRLFNLMCGELN 572
Query: 313 FV-----WNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
FV + ++DM R G ++++ MP + VS
Sbjct: 573 FVPSMKHYACMVDMLARAGNLEEALDFIERMPVQPSVS 610
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 158/335 (47%), Gaps = 65/335 (19%)
Query: 49 IVNLFYLMIDKGVRP---DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP 105
+V+L+ LM + P D+ + V+K+C+E +D++
Sbjct: 115 VVSLYRLM-RLSLHPTPHDYVLFSIVFKSCAESRDFQT---------------------- 151
Query: 106 LLDLFIKCGRMEITSGLF-EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK-DLVS 163
+ IT F + + D V L+D YAK + + F +I + D+VS
Sbjct: 152 ----------LTITHCHFVKSLPSDSFVLTCLVDAYAKFARVDEATRAFDEIHENDDVVS 201
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
W +M+ Y E L + M D N ++ +++AC ++ + GK +HG+
Sbjct: 202 WTSMIVAYVQNDCAREGLTLFNRMREAFVD--GNEFTVGSLVSACTKLNWLHQGKWVHGF 259
Query: 224 VLRHHI----HLSTA-------CGFVICSCSVFNQLST----RDVVVWNSIISAFVRSGQ 268
V+++ I +L+T+ CG + +C VF++ S+ RD+V W ++I + + G
Sbjct: 260 VIKNGICVNSYLTTSLLNMYVKCGNIQDACKVFDESSSSSYDRDLVSWTAMIVGYSQRGY 319
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKL-----AALPQGLGT-----GSFVWNAL 318
AL+L +D + + PN+VT+ S+L +C +L L GL V NAL
Sbjct: 320 PHLALELFKDKKWSGILPNSVTVSSLLSSCAQLGNSVMGKLLHGLAVKCGLDDHPVRNAL 379
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+DMY +CG + +R +F M K++VSWN +IS +
Sbjct: 380 VDMYAKCGVVSDARCVFEAMLEKDVVSWNSIISGF 414
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 101/240 (42%), Gaps = 26/240 (10%)
Query: 140 YAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI 199
YA L+ + F+ + +DL + M+ Y L V +L M + + +
Sbjct: 75 YASFGQLRHARKIFNHLPTRDLYCFKVMIRAYFLNDTPSGVVSLYRLMRLSLHPTPHDYV 134
Query: 200 SLSGVLAACAQVKGVKLGKAIH----------GYVLRHHIHLSTACGFVICSCSVFNQL- 248
S V +CA+ + + H +VL + V + F+++
Sbjct: 135 LFSIVFKSCAESRDFQTLTITHCHFVKSLPSDSFVLTCLVDAYAKFARVDEATRAFDEIH 194
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-- 306
DVV W S+I A+V++ + L L + A V N T+ S++ AC KL L Q
Sbjct: 195 ENDDVVSWTSMIVAYVQNDCAREGLTLFNRMREAFVDGNEFTVGSLVSACTKLNWLHQGK 254
Query: 307 ---------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH----KNLVSWNVMISVY 353
G+ S++ +L++MY +CG IQ + K+F ++LVSW MI Y
Sbjct: 255 WVHGFVIKNGICVNSYLTTSLLNMYVKCGNIQDACKVFDESSSSSYDRDLVSWTAMIVGY 314
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 163/345 (47%), Gaps = 53/345 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W S + Y +EE + LF+LMI G PD+F P KAC+ L+ +GK ++ +
Sbjct: 70 WNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGF- 128
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
K+ +E+ D V ++L++ Y+KC + +
Sbjct: 129 ----------AKKN------------------DEIGSDMFVGSALVELYSKCGQMGEALK 160
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + ++ D V W +M+ GY EE L +M M+ + + ++L V++ACAQ+
Sbjct: 161 VFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDC-VVLDPVTLVSVVSACAQL 219
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
VK G +HG V+R ++L G + ++F+++ +DV+ W+++I
Sbjct: 220 LNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMI 279
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-VW---- 315
+ + + +AL+L ++I +PN+VT+VS L AC L +G VW
Sbjct: 280 ACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFE 339
Query: 316 ------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
ALIDMY +C ++ +F +P K++VSW ++S Y
Sbjct: 340 LDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYA 384
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 167/345 (48%), Gaps = 55/345 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WTSM+ Y EE + LF M+ V D V AC++L + + G V+ +
Sbjct: 173 WTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLV 232
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I +F+G+ PL+ NSL++ YAK K++
Sbjct: 233 IRREFDGDL----PLV--------------------------NSLLNLYAKTGCEKIAAN 262
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FSK+ +KD++SW+ M+A YA E NL EMI+ +PN++++ L ACA
Sbjct: 263 LFSKMPEKDVISWSTMIACYANNEAANEALNLFH--EMIEKRFEPNSVTVVSALQACAVS 320
Query: 212 KGVKLGKAIH------GYVLRHHIHLSTACGFVICSC-----SVFNQLSTRDVVVWNSII 260
+ ++ GK IH G+ L + + ++ CSC +F +L +DVV W +++
Sbjct: 321 RNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALL 380
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLG 309
S + ++G ++ + R+++ ++P+ V +V +L A +L Q G
Sbjct: 381 SGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFN 440
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ FV +LI++Y +CG++ + K+F M +++V W+ MI+ YG
Sbjct: 441 SNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYG 485
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 157/330 (47%), Gaps = 55/330 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W M+ + G + + L+ M++KG++PD F P K+C+ L D + GK ++ +++
Sbjct: 786 WNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLV 845
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
CG D V+ +L+D YAKC ++ +
Sbjct: 846 C-------------------CG-----------CSNDLFVDAALVDMYAKCGDIEAARLV 875
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F K+ +DLVSW +M++GYA G+ E D M + + PN +S+ VL AC +
Sbjct: 876 FDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMR--SSGVIPNRVSILSVLLACGNLG 933
Query: 213 GVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ G+ H YV++ I ++TA CG + + +F++ + +D+V W+++I+
Sbjct: 934 ALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIA 993
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----LGTGSFV-- 314
++ G A+DL ++ A V+P+ VT VL AC L +G L T FV
Sbjct: 994 SYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIA 1053
Query: 315 -----WNALIDMYGRCGAIQKSRKIFVLMP 339
+ ++D+ GR G + ++ + MP
Sbjct: 1054 RKLSNYACMVDLLGRAGQLSEAVDLIENMP 1083
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 154/333 (46%), Gaps = 58/333 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W++M+ Y E +NLF+ MI+K P+ +AC+ ++ GK ++
Sbjct: 274 SWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIA 333
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ FE + V L+D+++KC + +D
Sbjct: 334 VWKGFELDFSVSTALIDMYMKCS-----------------CPDEAVDL------------ 364
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +KD+VSW A+L+GYA G + + M+ +QP+ +++ +LAA +++
Sbjct: 365 -FQRLPKKDVVSWVALLSGYAQNGMAYKSMGVF--RNMLSDGIQPDAVAVVKILAASSEL 421
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ +HGYV+R I L + CG + + +F + RDVV+W+S+I
Sbjct: 422 GIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMI 481
Query: 261 SAFVRSGQVVDALDLLRDVIVAN--VKPNTVTIVSVLPACLKLAALPQGLG--------- 309
+A+ G+ +AL++ D +V N V+PN VT +S+L AC + +GL
Sbjct: 482 AAYGIHGRGGEALEIF-DQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDY 540
Query: 310 ---TGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
S + ++D+ GR G + K+ I MP
Sbjct: 541 QLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMP 573
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 128/281 (45%), Gaps = 30/281 (10%)
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQ-----DFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
++ L+DLF C S L ++ + D L YAKC L+ + F +
Sbjct: 4 RQVLVDLFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETP 63
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
++ WN+ L Y EE L M + P+ ++ L ACA ++ ++LG
Sbjct: 64 HPNVHLWNSTLRSYCREKQWEETLRLFHLM-ICTAGEAPDNFTIPIALKACAGLRMLELG 122
Query: 218 KAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVR 265
K IHG+ ++ + L + CG + + VF + D V+W S+++ + +
Sbjct: 123 KVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQ 182
Query: 266 SGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPACLKLAALPQGLGTGSFVW--------- 315
+ +AL L +++ + V + VT+VSV+ AC +L + G V
Sbjct: 183 NNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLP 242
Query: 316 --NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
N+L+++Y + G + + +F MP K+++SW+ MI+ Y
Sbjct: 243 LVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYA 283
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 108/213 (50%), Gaps = 24/213 (11%)
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG- 222
WN M+ G+A G +++L +M++ ++P+ + L +CA + ++ GK IH
Sbjct: 786 WNVMIRGFATDG--RFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQH 843
Query: 223 ----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
+V + + CG + + VF++++ RD+V W S+IS + +G +
Sbjct: 844 LVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSET 903
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNALIDM 321
L + + V PN V+I+SVL AC L AL +G S+V A++DM
Sbjct: 904 LGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDM 963
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
Y +CG++ +R +F K+LV W+ MI+ YG
Sbjct: 964 YSKCGSLDLARCLFDETAGKDLVCWSAMIASYG 996
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 137/319 (42%), Gaps = 75/319 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++ G +H HL+ CG F+ + L++++ +WTSM+
Sbjct: 834 LQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISG 893
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y GY E + F LM GV P+ V AC L R G+ + Y+I FE +
Sbjct: 894 YAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFD 953
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V ++D++ KCG +++ + C F + K
Sbjct: 954 ILVATAIMDMYSKCGSLDL------------------------------ARCLFDETAGK 983
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
DLV W+AM+A Y + G + +L D +M++ ++P+ ++ + VL+AC+ ++ GK
Sbjct: 984 DLVCWSAMIASYGIHGHGRKAIDLFD--QMVKAGVRPSHVTFTCVLSACSHSGLLEEGKM 1041
Query: 220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
+ L T FVI R + + ++ R+GQ+ +A+DL+ ++
Sbjct: 1042 --------YFQLMTE-EFVI----------ARKLSNYACMVDLLGRAGQLSEAVDLIENM 1082
Query: 280 IVANVKPNTVTIVSVLPAC 298
V+P+ S+L AC
Sbjct: 1083 ---PVEPDASIWGSLLGAC 1098
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
VF + +WN +I F G+ + +L+L ++ +KP+ L +C L+
Sbjct: 774 VFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSD 833
Query: 304 LPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
L +G FV AL+DMY +CG I+ +R +F M ++LVSW MIS
Sbjct: 834 LQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISG 893
Query: 353 YG 354
Y
Sbjct: 894 YA 895
>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 719
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 106/386 (27%), Positives = 175/386 (45%), Gaps = 69/386 (17%)
Query: 6 QVHAHLIVCGV------------ELCAFLGS-----QLLE-------VFCNWTSMMGMYN 41
Q+H LIV G+ LC+F S L E CN T M N
Sbjct: 77 QIHTQLIVSGLLQQPLAAGRAVKTLCSFPDSVQHAVSLFEGLEEPDAFICN-TIMRTYVN 135
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
V Y + + M+ K V P+H+ P + K C E+ G+ ++ ++ FE +
Sbjct: 136 VNDPYTALGFYYEQMVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLF 195
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
V+ L+ ++ CGR+ +FE D + NS+ID Y K + + F ++ ++D
Sbjct: 196 VRNSLIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERD 255
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
L SWN+M+AGY G +L ++M + +S + ++ AQV+ +++
Sbjct: 256 LFSWNSMIAGYVGNGDMTAAEDLFNKMPF------RDIVSWNCMIDGYAQVQNMEI---- 305
Query: 221 HGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280
+C +FN + R+VV WN +++ +VR + L + D +
Sbjct: 306 --------------------ACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMF-DKM 344
Query: 281 VANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN------------ALIDMYGRCGAI 328
+ PN T+VSVL AC L L +G S++ N AL+ MY +CGA+
Sbjct: 345 MGETMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAM 404
Query: 329 QKSRKIFVLMPHKNLVSWNVMISVYG 354
+R +F M ++++VSWN MI YG
Sbjct: 405 DLARDVFDKMSNRSVVSWNSMIMGYG 430
>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Cucumis sativus]
Length = 792
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 92/396 (23%), Positives = 174/396 (43%), Gaps = 75/396 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
+E G ++H H++ C + L + +L ++ +WTSM+
Sbjct: 114 LEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISG 173
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y+ G + + L+ M+ G PDHF + K+CS L D+++ + ++ +++ +F
Sbjct: 174 YSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGA- 232
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D + N+LI Y K + + FS+I K
Sbjct: 233 -----------------------------DLIAQNALISMYTKFSQMADAINVFSRIIIK 263
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
DL+SW +M+AG++ G+ E EM + Q+ QPN +AC+++ G+
Sbjct: 264 DLISWGSMIAGFSQLGYELEALCHFREM-LSQSVYQPNEFVFGSAFSACSKLLEPDCGRQ 322
Query: 220 IHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IHG ++ + + CGF+ + +VF + D+V WN+II+ F
Sbjct: 323 IHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSN 382
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------VWNA 317
++ + + PN VT++S+L AC + L G+ S+ V N+
Sbjct: 383 AKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNS 442
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
L+ MY +C + + ++F + +K ++VSWN +++
Sbjct: 443 LLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTA 478
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 174/347 (50%), Gaps = 56/347 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGV-RPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W SM+ ++ LGY E + F M+ + V +P+ FV + ACS+L + G+ ++
Sbjct: 267 SWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHG- 325
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ IKF + DLF C SL D YAKC +L+ +
Sbjct: 326 -LCIKFGLGS-------DLFAGC---------------------SLCDMYAKCGFLESAR 356
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F I++ DLV+WNA++AG+A +E ++ +M T + PN +++ +L AC++
Sbjct: 357 TVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMR--HTGLVPNDVTVLSLLCACSE 414
Query: 211 VKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTR-DVVVWNS 258
+ G +H Y+++ +L + C + + VF + + D+V WN+
Sbjct: 415 PVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNT 474
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQG 307
+++A ++ Q + L L + + + +KP+ VT+ +VL + ++A+ + G
Sbjct: 475 LLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSG 534
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L V NALI+MY +CG+++ +RK+F + + +++SW+ +I Y
Sbjct: 535 LNLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYA 581
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/304 (22%), Positives = 141/304 (46%), Gaps = 55/304 (18%)
Query: 74 ACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN 133
ACS L+ G+ ++ +M++ ++ D ++
Sbjct: 107 ACSSLRSLEHGRKIHRHMLTCNYQ------------------------------PDMILQ 136
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
N ++ Y KC LK + F + K++VSW +M++GY+ G + L ++M+++
Sbjct: 137 NHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLY--VQMLRSG 194
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSC 242
P+ + ++ +C+ + KL + +H +VL+ I + T + +
Sbjct: 195 HIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAI 254
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV-KPNTVTIVSVLPACLKL 301
+VF+++ +D++ W S+I+ F + G ++AL R+++ +V +PN S AC KL
Sbjct: 255 NVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKL 314
Query: 302 AA-----------LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ GLG+ F +L DMY +CG ++ +R +F + +LV+WN +I
Sbjct: 315 LEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAII 374
Query: 351 SVYG 354
+ +
Sbjct: 375 AGFA 378
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/345 (22%), Positives = 145/345 (42%), Gaps = 57/345 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +++ + + +E + F M G+ P+ + ACSE G V+ Y++
Sbjct: 370 WNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIV 429
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ F + D V NSL+ Y+KC L +
Sbjct: 430 KMGF------------------------------NLDIPVCNSLLSMYSKCSNLNDALQV 459
Query: 153 FSKIKQK-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F I K D+VSWN +L EV L M + ++P+ ++L+ VL + Q+
Sbjct: 460 FEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLM--FASRIKPDHVTLTNVLVSSGQI 517
Query: 212 KGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSII 260
++G IH ++++ ++L T CG + C+ +F+ + D++ W+S+I
Sbjct: 518 ASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLI 577
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW----- 315
+ ++G +A +L R + VKPN +T V +L AC + + +GL +
Sbjct: 578 VGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRI 637
Query: 316 -------NALIDMYGRCGAIQKSRKIFVLMPH-KNLVSWNVMISV 352
+ ++D+ R G + + MP ++V W +++
Sbjct: 638 SPTKEHCSCMVDLLARAGCLDVAEDFIRQMPFVPDVVVWKTLLAA 682
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 87/179 (48%), Gaps = 22/179 (12%)
Query: 198 TISLSGVLAACAQVKGVKLGKAIHGYVL-----------RHHIHLSTACGFVICSCSVFN 246
+++ + ++ AC+ ++ ++ G+ IH ++L H + + CG + + ++F+
Sbjct: 98 SVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFD 157
Query: 247 QLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----LKL 301
+ ++VV W S+IS + R G+ +A+ L ++ + P+ T S++ +C KL
Sbjct: 158 SMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKL 217
Query: 302 A------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
A L G NALI MY + + + +F + K+L+SW MI+ +
Sbjct: 218 ARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFS 276
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 18/138 (13%)
Query: 228 HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
HI L+T F C +V + + + + + + A D+ + + +K
Sbjct: 45 HIRLNTQLAFSPCPLTVHYPHDDKIISLCKKNLHR-----EALKAFDIFQKCSSSPLK-- 97
Query: 288 TVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFV 336
+VT ++ AC L +L G + N ++ MYG+CG+++++R +F
Sbjct: 98 SVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFD 157
Query: 337 LMPHKNLVSWNVMISVYG 354
MP KN+VSW MIS Y
Sbjct: 158 SMPLKNVVSWTSMISGYS 175
>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 97/341 (28%), Positives = 166/341 (48%), Gaps = 56/341 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ +++ ++L+ M G P++F P V KAC+ D R+G ++ ++
Sbjct: 82 WNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLV 141
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
++ + VK LL L++KC + LKV
Sbjct: 142 KAGYDHDVFVKTSLLSLYVKCDNFDDA--------------------------LKV---- 171
Query: 153 FSKIKQKDLVSWNAMLAGY-ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F I K++VSW A++ GY + G FRE + +EM ++P++ SL VLAACA++
Sbjct: 172 FDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEM---GLKPDSFSLVKVLAACARL 228
Query: 212 KGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
G+ I Y+ + ++ ++T+ CG + + +F+ + +D+V W+++I
Sbjct: 229 GDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMI 288
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS------FV 314
+ +G ALDL + N+KP+ T+V VL AC L AL G+ S F+
Sbjct: 289 QGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFL 348
Query: 315 WN-----ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
N ALIDMY +CG++ ++ +IF M K+ V WN M+
Sbjct: 349 SNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMM 389
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/395 (23%), Positives = 172/395 (43%), Gaps = 77/395 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ LG+++H+ L+ G + F+ + LL ++ +WT+++
Sbjct: 130 VRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITG 189
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G++ E + F +++ G++PD F KV AC+ L D
Sbjct: 190 YISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGD------------------- 230
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
C +D +I SG M ++ V SL+D Y KC L+ ++ FS + +K
Sbjct: 231 -CTSGEWIDRYIS------DSG----MGRNVFVATSLLDMYVKCGNLERANLIFSAMPEK 279
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSW+ M+ GYA G ++ +L +M+ +++P+ ++ GVL+ACA + + LG
Sbjct: 280 DIVSWSTMIQGYAFNGLPQQALDLFFQMQ--SENLKPDCYTMVGVLSACATLGALDLGIW 337
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+ R+ I + + CG V + +F + +D VVWN+++ +G
Sbjct: 338 ASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGH 397
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWN 316
L V ++P+ T + +L C + +G L +
Sbjct: 398 AKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYG 457
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMI 350
++D+ GR G + ++ ++ MP K N V W ++
Sbjct: 458 CMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALL 492
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 113/224 (50%), Gaps = 24/224 (10%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
FS++K+ ++ WN M+ G ++ +L M PN ++ VL ACA+
Sbjct: 71 FSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMR--GGGFLPNNFTIPFVLKACARKL 128
Query: 213 GVKLGKAIHGYVLR----HHIHLSTACGFVICSCS-------VFNQLSTRDVVVWNSIIS 261
V+LG IH +++ H + + T+ + C VF+ + ++VV W +II+
Sbjct: 129 DVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIIT 188
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGT 310
++ SG +A+ + ++ +KP++ ++V VL AC +L G +G
Sbjct: 189 GYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGR 248
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
FV +L+DMY +CG ++++ IF MP K++VSW+ MI Y
Sbjct: 249 NVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYA 292
>gi|347954470|gb|AEP33735.1| chlororespiratory reduction 21, partial [Olimarabidopsis pumila]
Length = 811
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 164/345 (47%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++G+ +G E + F M++ + PD+FV P V KAC L+ R G+ V+ Y+
Sbjct: 120 SWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGRGVHGYV 179
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I E CV V +SL D Y KC L +
Sbjct: 180 IKAGLED--CV----------------------------FVASSLADMYGKCGVLDDARK 209
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I ++++V+WNA++ GY G EE L +M + ++P +++S L+A A +
Sbjct: 210 VFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFSDMR--KEGVEPTRVTVSTCLSASANM 267
Query: 212 KGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSII 260
GV+ GK H + + + L G + + VF+++ +DVV WN +I
Sbjct: 268 VGVEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMVFDRMFDKDVVTWNLLI 327
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
S +V+ G V DA+ + + + + +K + VT+ +++ A + L G L
Sbjct: 328 SGYVQQGLVEDAIYMSQLMRLEKLKYDCVTLSTLMSAAARTENLKFGKEVQCYCIRHSLD 387
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
T + + +DMY +CG+I ++K+F K+L+ WN +++ Y
Sbjct: 388 TDIVLASTTMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYA 432
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/426 (22%), Positives = 184/426 (43%), Gaps = 87/426 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q HA IV G+EL LG+ LL +C W ++
Sbjct: 270 VEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMVFDRMFDKDVVTWNLLISG 329
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G E+ + + LM + ++ D + A + ++ + GK+V Y I + +
Sbjct: 330 YVQQGLVEDAIYMSQLMRLEKLKYDCVTLSTLMSAAARTENLKFGKEVQCYCIRHSLDTD 389
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEE-MDQDFLVNNSLIDFYAKC--------------- 143
+ +D++ KCG + +F+ +++D ++ N+L+ YA+
Sbjct: 390 IVLASTTMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAQSGLSGEALRLFYEMQL 449
Query: 144 ------------------RYLKVSHCK--FSKIKQK----DLVSWNAMLAGYALGGFREE 179
R +V+ K F +++ +L+SW M+ G G EE
Sbjct: 450 ESVPPNVITWNLIILSLLRNGEVNEAKEMFLQMQSSGISPNLISWTTMMNGMVQNGCSEE 509
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST------ 233
L +M+ ++ ++PN S++ L+A A + + G++IHGY++R+ H S+
Sbjct: 510 AILFLRKMQ--ESGLRPNAFSITVALSASANLASLHFGRSIHGYIIRNLRHSSSVSIETS 567
Query: 234 ------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
CG + + VF ++ ++N++ISA+ G V +A+ L R + +KP+
Sbjct: 568 LVDMYAKCGDINKAERVFGSKLYSELPLYNAMISAYALYGNVKEAIALYRSLEDMGIKPD 627
Query: 288 TVTIVSVLPACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIF 335
+VT S+L AC + Q +G + + + ++D+ G +K+ ++
Sbjct: 628 SVTFTSLLSACNHAGDIDQAVGVFTAMVLKHGMTPCLEHYGLMVDLLASAGETEKAIRLI 687
Query: 336 VLMPHK 341
MP+K
Sbjct: 688 EEMPYK 693
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 84/385 (21%), Positives = 164/385 (42%), Gaps = 92/385 (23%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYN 41
G VH ++I G+E C F+ S L +++ W ++M Y
Sbjct: 171 FGRGVHGYVIKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYV 230
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G EE + LF M +GV P A + + GK +
Sbjct: 231 QNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASANMVGVEEGKQSH------------- 277
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ I +GL + D ++ SL++FY K ++ + F ++ KD+
Sbjct: 278 -------------AIAIVNGL----ELDNILGTSLLNFYCKVGLIEYAEMVFDRMFDKDV 320
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
V+WN +++GY G E+ + M + ++ + ++LS +++A A+ + +K GK +
Sbjct: 321 VTWNLLISGYVQQGLVEDAIYMSQLMRL--EKLKYDCVTLSTLMSAAARTENLKFGKEVQ 378
Query: 222 GYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y +RH + + CG ++ + VF+ +D+++WN++++A+ +SG
Sbjct: 379 CYCIRHSLDTDIVLASTTMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAQSGLSG 438
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQK 330
+AL L ++ + +V PN +T WN +I R G + +
Sbjct: 439 EALRLFYEMQLESVPPNVIT------------------------WNLIILSLLRNGEVNE 474
Query: 331 SRKIFVLMPHK----NLVSWNVMIS 351
++++F+ M NL+SW M++
Sbjct: 475 AKEMFLQMQSSGISPNLISWTTMMN 499
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 127/252 (50%), Gaps = 29/252 (11%)
Query: 129 DFLVNNSLID-----FYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNL 183
DF N I+ FYAKC L+ + FSK++ +++ SW A++ G E L
Sbjct: 81 DFYARNEYIETKLVIFYAKCDALEXAEVIFSKLRVRNVFSWAAIIGVKCRIGLCEGA--L 138
Query: 184 LDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LS 232
+ +EM++ ++ P+ + V AC ++ + G+ +HGYV++ + +
Sbjct: 139 MGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVIKAGLEDCVFVASSLADMY 198
Query: 233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
CG + + VF+++ R+VV WN+++ +V++G +A+ L D+ V+P VT+
Sbjct: 199 GKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVS 258
Query: 293 SVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK 341
+ L A + A+ GL + + +L++ Y + G I+ + +F M K
Sbjct: 259 TCLSASANMVGVEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMVFDRMFDK 318
Query: 342 NLVSWNVMISVY 353
++V+WN++IS Y
Sbjct: 319 DVVTWNLLISGY 330
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 89/203 (43%), Gaps = 26/203 (12%)
Query: 175 GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH------H 228
G +E +L+ EM+ + P L C + + GK IH +L++ +
Sbjct: 29 GEIKEALSLVTEMDFRNXRIGPEI--YGEXLQGCVYERDLSTGKQIHARILKNGDFYARN 86
Query: 229 IHLSTACGFVICSCS-------VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281
++ T C +F++L R+V W +II R G AL +++
Sbjct: 87 EYIETKLVIFYAKCDALEXAEVIFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLE 146
Query: 282 ANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQK 330
+ P+ + +V AC L + GL FV ++L DMYG+CG +
Sbjct: 147 NEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVIKAGLEDCVFVASSLADMYGKCGVLDD 206
Query: 331 SRKIFVLMPHKNLVSWNVMISVY 353
+RK+F +P +N+V+WN ++ Y
Sbjct: 207 ARKVFDEIPERNVVAWNALMVGY 229
>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
[Vitis vinifera]
gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
Length = 703
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 103/388 (26%), Positives = 173/388 (44%), Gaps = 77/388 (19%)
Query: 9 AHLIVCGVELC--AFLGSQLLEVFC---------------------NWTSMMGMYNVLGY 45
AH + ++ C F+GS L+ ++C +W +M+ Y
Sbjct: 130 AHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKL 189
Query: 46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP 105
E + LF LM + + FV V A + + GK ++ C+
Sbjct: 190 AAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIH------------CIA-- 235
Query: 106 LLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWN 165
+K G + I S V N+L+ YAKC L + F K+ ++W+
Sbjct: 236 -----VKNGLLSIVS-----------VGNALVTMYAKCGSLDDALQTFETSSDKNSITWS 279
Query: 166 AMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL 225
AM+ GYA G ++ L M + + ++P+ + GV+ AC+ + GK +H Y+L
Sbjct: 280 AMITGYAQSGDSDKALKLFSSMHL--SGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLL 337
Query: 226 R----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALD 274
+ I++ TA C ++ + F+ L D+V+W S+I +V++G+ DAL
Sbjct: 338 KLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALS 397
Query: 275 LLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALIDMYG 323
L + + + PN +T+ SVL AC LAAL Q G G + +AL MY
Sbjct: 398 LYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYA 457
Query: 324 RCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+CG ++ +F MP ++++SWN MIS
Sbjct: 458 KCGCLKDGTLVFRRMPARDVISWNAMIS 485
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 135/289 (46%), Gaps = 43/289 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W++M+ Y G ++ + LF M G+RP F V ACS+L GK V+DY+
Sbjct: 277 TWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYL 336
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + FE V +L+D YAKC + +
Sbjct: 337 LKLGFE------------------------------SQIYVMTALVDMYAKCSSIVDARK 366
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +++ D+V W +M+ GY G E+ +L MEM + PN ++++ VL AC+ +
Sbjct: 367 GFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEM--EGILPNELTMASVLKACSSL 424
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACG------FVICSCS-----VFNQLSTRDVVVWNSII 260
++ GK IH +++ L G + C C VF ++ RDV+ WN++I
Sbjct: 425 AALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMI 484
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG 309
S ++G +AL+L ++ + KP+ VT V++L AC + + +G G
Sbjct: 485 SGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWG 533
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 109/247 (44%), Gaps = 26/247 (10%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGG--FREEVTNLLDEMEM 189
+ NSL++ YAKC+ L+ + F +I+ KD+VSWN ++ GY+ G V L M
Sbjct: 42 IANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRA 101
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFV 238
T PN + +GV A + + G+ H ++ +++ G
Sbjct: 102 ENT--APNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLT 159
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ VF+ + R+ V W ++IS + +AL L R + N SVL A
Sbjct: 160 PEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSAL 219
Query: 299 -----------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
+ A+ GL + V NAL+ MY +CG++ + + F KN ++W+
Sbjct: 220 TLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWS 279
Query: 348 VMISVYG 354
MI+ Y
Sbjct: 280 AMITGYA 286
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 113/248 (45%), Gaps = 24/248 (9%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
+D V +SL++ Y K + F + +++ VSW M++GYA E L M
Sbjct: 141 RDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLM 200
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACG 236
+ + N + VL+A + V GK IH +++ + + CG
Sbjct: 201 R--REEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCG 258
Query: 237 FVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296
+ + F S ++ + W+++I+ + +SG AL L + ++ ++P+ T V V+
Sbjct: 259 SLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVIN 318
Query: 297 ACLKLAALPQG---------LGTGS--FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
AC L A +G LG S +V AL+DMY +C +I +RK F + ++V
Sbjct: 319 ACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVL 378
Query: 346 WNVMISVY 353
W MI Y
Sbjct: 379 WTSMIGGY 386
>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 1227
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 160/333 (48%), Gaps = 56/333 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTS++ Y G Y++ + LFY M KGV PD + V AC+ G+DV++Y+
Sbjct: 722 SWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYI 781
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ N + P V+N+L+D YAKC ++ ++
Sbjct: 782 ----RKNNMALCLP--------------------------VSNALMDMYAKCGSMEEAYL 811
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS+I KD+VSWN M+ GY+ E L EM Q + +P+ I+++ +L AC +
Sbjct: 812 VFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEM---QKESRPDGITMACLLPACGSL 868
Query: 212 KGVKLGKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+++G+ IHG +LR+ +H++ A CG ++ + +F+ + +D++ W +I
Sbjct: 869 AALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMI 928
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
S G +A+ + + +A +KP+ +T S+L AC L +G G + +
Sbjct: 929 SGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNM 988
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMPHK 341
+ ++D+ R G + K+ + MP K
Sbjct: 989 EPKLEHYACMVDLLARTGNLSKAYNLIETMPIK 1021
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 151/295 (51%), Gaps = 33/295 (11%)
Query: 82 RVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYA 141
RVG D+ + S+ AC L L GR G+ ++ + NN+L+D Y+
Sbjct: 649 RVGVDLATLVNSVA----ACANVGSLSL----GRALHGQGVKACFSREVMFNNTLLDMYS 700
Query: 142 KCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISL 201
KC L + F K+ QK +VSW +++A Y G ++ L EME + P+ S+
Sbjct: 701 KCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEME--SKGVSPDVYSM 758
Query: 202 SGVLAACAQVKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLST 250
+ VL ACA + G+ +H Y+ ++++ L CG + + VF+Q+
Sbjct: 759 TSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPV 818
Query: 251 RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG- 309
+D+V WN++I + ++ +AL L + + +P+ +T+ +LPAC LAAL G G
Sbjct: 819 KDIVSWNTMIGGYSKNSLPNEALKLFAE-MQKESRPDGITMACLLPACGSLAALEIGRGI 877
Query: 310 ----------TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ V NALIDMY +CG++ +R +F ++P K+L++W VMIS G
Sbjct: 878 HGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCG 932
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 102/381 (26%), Positives = 183/381 (48%), Gaps = 44/381 (11%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLF-YLMIDK 59
++ G VH+ + G+ + LG++L VF MY G E +F +++ D
Sbjct: 467 LQEGKMVHSVISSNGIPIEGVLGAKL--VF--------MYVSCGALREGRRIFDHILSDN 516
Query: 60 GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM--- 116
V F+ + +++ DYR ++ M + GN+ +L F GR+
Sbjct: 517 KV----FLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGEC 572
Query: 117 -EITSGLFEEMDQDF-LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALG 174
I +++ + V NSLI Y K + +H F ++ +D+VSWN+M++G +
Sbjct: 573 KRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMN 632
Query: 175 GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-------- 226
GF +M +++ + T+ S +AACA V + LG+A+HG ++
Sbjct: 633 GFSHSALEFFVQMLILRVGVDLATLVNS--VAACANVGSLSLGRALHGQGVKACFSREVM 690
Query: 227 ---HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283
+ + + CG + + F ++ + VV W S+I+A+VR G DA+ L ++
Sbjct: 691 FNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKG 750
Query: 284 VKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSR 332
V P+ ++ SVL AC +L +G ++ V NAL+DMY +CG+++++
Sbjct: 751 VSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAY 810
Query: 333 KIFVLMPHKNLVSWNVMISVY 353
+F +P K++VSWN MI Y
Sbjct: 811 LVFSQIPVKDIVSWNTMIGGY 831
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 92/198 (46%), Gaps = 25/198 (12%)
Query: 179 EVTNLLDEMEMIQTDMQP--NTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACG 236
EV +L + +E+++ + + + S +L CA+ K ++ GK +H + + I + G
Sbjct: 430 EVGDLRNAVELLRMSQKSELDLNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLG 489
Query: 237 ----FVICSCSVFNQ--------LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV 284
F+ SC + LS V +WN ++S + + G +++ L + + +
Sbjct: 490 AKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGI 549
Query: 285 KPNTVTIVSVLP---------ACLKLAALPQGLGTGSF--VWNALIDMYGRCGAIQKSRK 333
N+ T +L C ++ LG GS+ V N+LI Y + G + + K
Sbjct: 550 TGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHK 609
Query: 334 IFVLMPHKNLVSWNVMIS 351
+F + +++VSWN MIS
Sbjct: 610 LFDELGDRDVVSWNSMIS 627
>gi|356509887|ref|XP_003523674.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Glycine max]
Length = 750
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 107/345 (31%), Positives = 163/345 (47%), Gaps = 57/345 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WTS++G+Y +G E + LF M + +RPD V V D GK + +I
Sbjct: 274 WTSVIGVYARIGMMGECLRLFREMQENEIRPDGVVVGCVLSGFGNSMDVFQGKAFHGVII 333
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+R +D D VN+SL+ Y K L ++
Sbjct: 334 ----------RRYYVD--------------------DEKVNDSLLFMYCKFGMLSLAERI 363
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + Q WN M+ GY G + L EM+ + + TI ++ +A+CAQ+
Sbjct: 364 F-PLCQGSGDGWNFMVFGYGKVGENVKCVELFREMQWL--GIHSETIGIASAIASCAQLG 420
Query: 213 GVKLGKAIH-----GYVLRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
V LG++IH G++ +I ++ + CG + + +FN T DVV WN++I
Sbjct: 421 AVNLGRSIHCNVIKGFLDGKNISVTNSLVEMYGKCGKMTFAWRIFNTSET-DVVSWNTLI 479
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTGSFV 314
S+ V Q +A++L ++ + KPNT T+V VL AC LA+L +G + F
Sbjct: 480 SSHVHIKQHEEAVNLFSKMVREDQKPNTATLVVVLSACSHLASLEKGERVHCYINESGFT 539
Query: 315 WN-----ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
N ALIDMY +CG +QKSR +F M K+++ WN MIS YG
Sbjct: 540 LNLPLGTALIDMYAKCGQLQKSRMVFDSMMEKDVICWNAMISGYG 584
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 78/329 (23%), Positives = 149/329 (45%), Gaps = 54/329 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W M+ Y +G + V LF M G+ + +C++L +G+ ++ +I
Sbjct: 374 WNFMVFGYGKVGENVKCVELFREMQWLGIHSETIGIASAIASCAQLGAVNLGRSIHCNVI 433
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+G ++ V NSL++ Y KC + +
Sbjct: 434 KGFLDG-----------------------------KNISVTNSLVEMYGKCGKMTFAWRI 464
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+ + D+VSWN +++ + EE NL +M ++ D +PNT +L VL+AC+ +
Sbjct: 465 FN-TSETDVVSWNTLISSHVHIKQHEEAVNLFSKM--VREDQKPNTATLVVVLSACSHLA 521
Query: 213 GVKLGKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ G+ +H Y+ ++ L TA CG + S VF+ + +DV+ WN++IS
Sbjct: 522 SLEKGERVHCYINESGFTLNLPLGTALIDMYAKCGQLQKSRMVFDSMMEKDVICWNAMIS 581
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGT 310
+ +G AL++ + + +NV PN +T +S+L AC + +G +
Sbjct: 582 GYGMNGYAESALEIFQHMEESNVMPNGITFLSLLSACAHAGLVEEGKYMFARMKSYSVNP 641
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+ ++D+ GR G +Q++ + + MP
Sbjct: 642 NLKHYTCMVDLLGRYGNVQEAEAMVLSMP 670
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 129/275 (46%), Gaps = 37/275 (13%)
Query: 110 FIKCGRMEITS------GLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
F+ CG + S G+ + + +S++D Y+KC + ++ F ++ KDL+
Sbjct: 214 FLACGNLGAVSEGSCLHGVVVKNGVASFIQSSVLDMYSKCGVPREAYRSFCEVIHKDLLC 273
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
W +++ YA G E L EM+ + +++P+ + + VL+ V GKA HG
Sbjct: 274 WTSVIGVYARIGMMGECLRLFREMQ--ENEIRPDGVVVGCVLSGFGNSMDVFQGKAFHGV 331
Query: 224 VLRHHI----HLSTACGFVICSCSVFNQLSTRDVVV---------WNSIISAFVRSGQVV 270
++R + ++ + F+ C F LS + + WN ++ + + G+ V
Sbjct: 332 IIRRYYVDDEKVNDSLLFMYCK---FGMLSLAERIFPLCQGSGDGWNFMVFGYGKVGENV 388
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL------------GTGSFVWNAL 318
++L R++ + T+ I S + +C +L A+ G G V N+L
Sbjct: 389 KCVELFREMQWLGIHSETIGIASAIASCAQLGAVNLGRSIHCNVIKGFLDGKNISVTNSL 448
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
++MYG+CG + + +IF ++VSWN +IS +
Sbjct: 449 VEMYGKCGKMTFAWRIFN-TSETDVVSWNTLISSH 482
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 120/269 (44%), Gaps = 29/269 (10%)
Query: 107 LDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK--FSKIKQKDLVSW 164
LD ++ + +TSG + + + LI Y S C F + KD +
Sbjct: 20 LDSLLRFHALTVTSG----HSTNLFMASKLISLYDSLNN-DPSSCSTLFHSLPSKDTFLY 74
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
N+ L V +L M +++ PN +L V++A A + + G ++H
Sbjct: 75 NSFLKSLFSRSLFPRVLSLFSHMR--ASNLSPNHFTLPIVVSAAAHLTLLPHGASLHALA 132
Query: 225 LRHHIHLSTA--------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL 276
+ + S+A CG + + VF+++ RDVV W ++I V +G+ L L
Sbjct: 133 SKTGLFHSSASFVSLYSRCGRMELARKVFDEIPKRDVVAWTALIIGHVHNGEPEKGLRCL 192
Query: 277 RDV---IVANVKPNTVTIVSVLPACLKLAALPQGL---------GTGSFVWNALIDMYGR 324
R V + + KPN T AC L A+ +G G SF+ ++++DMY +
Sbjct: 193 RHVHGVVEDDEKPNAKTWEGGFLACGNLGAVSEGSCLHGVVVKNGVASFIQSSVLDMYSK 252
Query: 325 CGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
CG +++ + F + HK+L+ W +I VY
Sbjct: 253 CGVPREAYRSFCEVIHKDLLCWTSVIGVY 281
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 88/187 (47%), Gaps = 32/187 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ + + +EE VNLF M+ + +P+ V ACS L G+ V+ Y+
Sbjct: 474 SWNTLISSHVHIKQHEEAVNLFSKMVREDQKPNTATLVVVLSACSHLASLEKGERVHCYI 533
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F N + L+D++ KCG+++ + +F+ M
Sbjct: 534 NESGFTLNLPLGTALIDMYAKCGQLQKSRMVFDSM------------------------- 568
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+KD++ WNAM++GY + G+ E + ME ++++ PN I+ +L+ACA
Sbjct: 569 -----MEKDVICWNAMISGYGMNGYAESALEIFQHME--ESNVMPNGITFLSLLSACAHA 621
Query: 212 KGVKLGK 218
V+ GK
Sbjct: 622 GLVEEGK 628
>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Cucumis sativus]
Length = 849
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 170/352 (48%), Gaps = 62/352 (17%)
Query: 32 NWTSMMGMY--NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
+W++M+ + N +G+ + F MI+ G P+ + +ACS + VG ++
Sbjct: 135 SWSAMVSCFANNNMGFRALLT--FVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFG 192
Query: 90 YMISIKF-EGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKV 148
+++ + + + CV L+D+F+K GR ++ S KV
Sbjct: 193 FVVKTGYLQSDVCVGCGLIDMFVK-GRGDLVSAF------------------------KV 227
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
F K+ +++ V+W M+ G+ E +L +EMI + +P+ +LSGV++AC
Sbjct: 228 ----FEKMPERNAVTWTLMITRLMQFGYAGEAIDLF--LEMILSGYEPDRFTLSGVISAC 281
Query: 209 AQVKGVKLGKAIHGYVLRHHIHLSTACG------FVICSCS--------VFNQLSTRDVV 254
A ++ + LG+ +H +RH + L G + CS +F+Q+ +V
Sbjct: 282 ANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVF 341
Query: 255 VWNSIISAFVRSGQV-VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------ 307
W ++I+ +V+ G +ALDL R +I+ +V PN T S L AC LAAL G
Sbjct: 342 SWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTH 401
Query: 308 ---LGTGSF--VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
LG S V N+LI MY R G I +RK F ++ KNL+S+N +I Y
Sbjct: 402 AVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYA 453
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 149/334 (44%), Gaps = 56/334 (16%)
Query: 32 NWTSMM-GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+WT+M+ G GY EE ++LF MI V P+HF KAC+ L R+G+ V+ +
Sbjct: 342 SWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTH 401
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ + F CV NSLI YA+ + +
Sbjct: 402 AVKLGFSSVNCVA------------------------------NSLISMYARSGRIDDAR 431
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + +K+L+S+N ++ YA EE L +E+E M + + + +L+ A
Sbjct: 432 KAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIE--DQGMGASAFTFASLLSGAAS 489
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ + G+ IH V++ + L+ + CG + + VF + R+V+ W SI
Sbjct: 490 IGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSI 549
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA-- 317
I+ F + G AL+L ++ V+PN VT ++VL AC + + +G ++
Sbjct: 550 ITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHG 609
Query: 318 ----------LIDMYGRCGAIQKSRKIFVLMPHK 341
++D+ GR G++ ++ + MP+K
Sbjct: 610 VIPRMEHYACMVDILGRSGSLSEAIQFINSMPYK 643
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 153/345 (44%), Gaps = 52/345 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT M+ GY E ++LF MI G PD F V AC+ ++ +G+ ++ I
Sbjct: 239 WTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAI 298
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ CV L++++ KC V+ S+ C K+
Sbjct: 299 RHGLTLDRCVGCCLINMYAKCS-----------------VDGSM------CAARKI---- 331
Query: 153 FSKIKQKDLVSWNAMLAGYAL-GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I ++ SW AM+ GY GG+ EE +L MI T + PN + S L ACA +
Sbjct: 332 FDQILDHNVFSWTAMITGYVQKGGYDEEALDLF--RGMILTHVIPNHFTFSSTLKACANL 389
Query: 212 KGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+++G+ + + ++ I + G + + F+ L ++++ +N++I
Sbjct: 390 AALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVI 449
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLG 309
A+ ++ +AL+L ++ + + T S+L + + + GL
Sbjct: 450 DAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLK 509
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V NALI MY RCG I+ + ++F M +N++SW +I+ +
Sbjct: 510 LNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFA 554
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/339 (23%), Positives = 146/339 (43%), Gaps = 62/339 (18%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G + ++ M+ +G PD K C + + +G V++ + + ++
Sbjct: 45 GRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTL 104
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
L+ L+ KCG+ E + +F+ M +DL+S
Sbjct: 105 NSLISLYSKCGQWEKATSIFQLMGS-----------------------------SRDLIS 135
Query: 164 WNAMLAGYALG--GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
W+AM++ +A GFR LL ++MI+ PN + AC+ + V +G +I
Sbjct: 136 WSAMVSCFANNNMGFRA----LLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIF 191
Query: 222 GYVLRHHIHLSTAC-------------GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
G+V++ S C G ++ + VF ++ R+ V W +I+ ++ G
Sbjct: 192 GFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGY 251
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQGLGTGSFVWNA 317
+A+DL ++I++ +P+ T+ V+ AC L A+ GL V
Sbjct: 252 AGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCC 311
Query: 318 LIDMYGRC---GAIQKSRKIFVLMPHKNLVSWNVMISVY 353
LI+MY +C G++ +RKIF + N+ SW MI+ Y
Sbjct: 312 LINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGY 350
>gi|255556669|ref|XP_002519368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541435|gb|EEF42985.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 524
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/289 (29%), Positives = 142/289 (49%), Gaps = 14/289 (4%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ Y G+ EE + LF MI GV+P+ V +CS D + +
Sbjct: 154 SWNAIISGYAQNGFVEEALKLFNHMIRLGVQPNETTWATVISSCSSCGDPCRAESFVKLL 213
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM--DQDFLVNNSLIDFYAKCRYLKVS 149
K + N VK LLD+ KCG +E G+F E+ ++ N++I Y + L +
Sbjct: 214 DKRKIKMNYFVKTALLDMNAKCGNLEAARGIFNELGVSRNSSTWNAMISAYTRVGDLLSA 273
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F K+ ++D VSWN M++GYA G L EM + D QP+ +++ +++AC
Sbjct: 274 RDLFDKMPERDAVSWNTMISGYAQNGQSAMAIELFKEM-IDAKDSQPDEVTMVSIISACG 332
Query: 210 QVKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNS 258
+ ++LG I ++ + I L+ + CG + + +F ++ TRDVV +NS
Sbjct: 333 HLGALELGTWIVNFISEYRIELTISGYNALIFMYSKCGNMKEAQRIFQEMETRDVVSYNS 392
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
+I F G+ +A+ LL + V P+ VT + VL AC + +G
Sbjct: 393 LIGGFAAHGEGNEAIKLLLSMKEEGVDPDHVTYIGVLTACSHAGLVEEG 441
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 102/406 (25%), Positives = 191/406 (47%), Gaps = 103/406 (25%)
Query: 36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKD---VYDYMI 92
M+ Y+ LG+ +E+++ F + + ++ D + P V K+ GKD + +++
Sbjct: 1 MLKYYSQLGFQDELLSFFKRIYCR-IKLDASLYPLVIKSS--------GKDGILFHAHIL 51
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHC 151
+ + + ++ +LD++ K +E LF+EM + L + NS+I Y KC + C
Sbjct: 52 KLGHQSDPYIRNVILDMYAKHSLIENARKLFDEMTERSLADWNSMICGYWKCGN-ETEAC 110
Query: 152 K-------------------FSKIKQ-------------KDLVSWNAMLAGYALGGFREE 179
FSKIK+ K++VSWNA+++GYA GF EE
Sbjct: 111 SLFSMTPERNVITWTAMVTGFSKIKELDSARKYFDDMPVKNIVSWNAIISGYAQNGFVEE 170
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQ----------------------------- 210
L + M I+ +QPN + + V+++C+
Sbjct: 171 ALKLFNHM--IRLGVQPNETTWATVISSCSSCGDPCRAESFVKLLDKRKIKMNYFVKTAL 228
Query: 211 ------------VKGV--KLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVW 256
+G+ +LG + + I T G ++ + +F+++ RD V W
Sbjct: 229 LDMNAKCGNLEAARGIFNELGVSRNSSTWNAMISAYTRVGDLLSARDLFDKMPERDAVSW 288
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVA-NVKPNTVTIVSVLPACLKLAALPQGLGTGSFV- 314
N++IS + ++GQ A++L +++I A + +P+ VT+VS++ AC L AL G +F+
Sbjct: 289 NTMISGYAQNGQSAMAIELFKEMIDAKDSQPDEVTMVSIISACGHLGALELGTWIVNFIS 348
Query: 315 ----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+NALI MY +CG ++++++IF M +++VS+N +I
Sbjct: 349 EYRIELTISGYNALIFMYSKCGNMKEAQRIFQEMETRDVVSYNSLI 394
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 111/271 (40%), Gaps = 77/271 (28%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D + N ++D YAK ++ + F ++ ++ L WN+M+ GY G E +L
Sbjct: 58 DPYIRNVILDMYAKHSLIENARKLFDEMTERSLADWNSMICGYWKCGNETEACSLFS--- 114
Query: 189 MIQTDMQP--NTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFN 246
M P N I+ + ++ +++K L +A + F+
Sbjct: 115 -----MTPERNVITWTAMVTGFSKIK-----------------ELDSARKY-------FD 145
Query: 247 QLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-------- 298
+ +++V WN+IIS + ++G V +AL L +I V+PN T +V+ +C
Sbjct: 146 DMPVKNIVSWNAIISGYAQNGFVEEALKLFNHMIRLGVQPNETTWATVISSCSSCGDPCR 205
Query: 299 ------------------LKLAALPQ-----------------GLGTGSFVWNALIDMYG 323
+K A L G+ S WNA+I Y
Sbjct: 206 AESFVKLLDKRKIKMNYFVKTALLDMNAKCGNLEAARGIFNELGVSRNSSTWNAMISAYT 265
Query: 324 RCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
R G + +R +F MP ++ VSWN MIS Y
Sbjct: 266 RVGDLLSARDLFDKMPERDAVSWNTMISGYA 296
>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 534
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 96/373 (25%), Positives = 178/373 (47%), Gaps = 37/373 (9%)
Query: 4 GIQVHAHLIVCGVELCAFLG-----SQLLEVFCN-----WTSMMGMYNVLGYYEEIVNLF 53
G+ + ++ V+LC LG ++L N + S++ Y Y +++ ++
Sbjct: 37 GLSQSSFMVTKMVDLCDKLGDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIY 96
Query: 54 YLMIDKGVR-PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIK 112
++ K + PD F P ++K+C+ L +GK V+ ++ + + L+D+++K
Sbjct: 97 KQLLRKTIEFPDRFTFPFMFKSCASLGSCYLGKQVHGHLYKFGPRFHVVTENALIDMYMK 156
Query: 113 CGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGY 171
+ +F+EM ++D + NSL+ YA+ +K + F + K +VSW AM++GY
Sbjct: 157 FDDLVDAHKVFDEMSERDVISWNSLLSGYARLGQMKKAKGLFHLMIDKTIVSWTAMISGY 216
Query: 172 ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH--- 228
G E + EM++ ++P+ ISL VL +CA + ++LGK IH Y R
Sbjct: 217 TGIGCYVEAMDFFREMQL--AGIEPDEISLISVLPSCAHLGSLELGKWIHMYAERRGLLK 274
Query: 229 --------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280
I + + CG + + +F Q +DV+ W+++IS + G A + ++
Sbjct: 275 QTGVCNALIEMYSKCGMLSQAIQLFEQTKGKDVISWSTMISGYAYHGNAHRAFETFIEMQ 334
Query: 281 VANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAI 328
A VKPN +T + +L AC + QGL + + LID+ R G +
Sbjct: 335 RAKVKPNGITFLGLLSACSHVGLWQQGLKYFDMMRQDYQIEPKIEHYGCLIDVLARAGKL 394
Query: 329 QKSRKIFVLMPHK 341
+++ +I MP K
Sbjct: 395 ERAVEITKTMPVK 407
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 123/255 (48%), Gaps = 54/255 (21%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+++ ++ +N+++ Y +V + ++ + +T P+ + + +CA +
Sbjct: 65 FNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQL-LRKTIEFPDRFTFPFMFKSCASLG 123
Query: 213 GVKLGKAIHGYVLRH--HIHLSTACGFV---------ICSCSVFNQLSTRDVVVWNSIIS 261
LGK +HG++ + H+ T + + + VF+++S RDV+ WNS++S
Sbjct: 124 SCYLGKQVHGHLYKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMSERDVISWNSLLS 183
Query: 262 AFVRSGQV-------------------------------VDALDLLRDVIVANVKPNTVT 290
+ R GQ+ V+A+D R++ +A ++P+ ++
Sbjct: 184 GYARLGQMKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEIS 243
Query: 291 IVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
++SVLP+C L +L +GL + V NALI+MY +CG + ++ ++F
Sbjct: 244 LISVLPSCAHLGSLELGKWIHMYAERRGLLKQTGVCNALIEMYSKCGMLSQAIQLFEQTK 303
Query: 340 HKNLVSWNVMISVYG 354
K+++SW+ MIS Y
Sbjct: 304 GKDVISWSTMISGYA 318
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 23/168 (13%)
Query: 210 QVKGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNS 258
+VK K IH ++ H + S+ G + + +FNQ+S +V ++NS
Sbjct: 19 RVKSRNEWKKIHACIIVHGLSQSSFMVTKMVDLCDKLGDMDYATRLFNQVSNPNVFLYNS 78
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVK-PNTVTIVSVLPACLKLAALPQGLGTGSFVW-- 315
II A+ + D + + + ++ ++ P+ T + +C L + G ++
Sbjct: 79 IIRAYTHNSLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYLGKQVHGHLYKF 138
Query: 316 ---------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
NALIDMY + + + K+F M ++++SWN ++S Y
Sbjct: 139 GPRFHVVTENALIDMYMKFDDLVDAHKVFDEMSERDVISWNSLLSGYA 186
>gi|449440359|ref|XP_004137952.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37310-like [Cucumis sativus]
Length = 595
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 103/410 (25%), Positives = 179/410 (43%), Gaps = 67/410 (16%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGY--YEEIVNLFYLMIDK 59
+G Q+HA L++ V FLGS+L+ + S+ YNV G + I + L+I
Sbjct: 20 RVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKIPRKNIFSWNALLISY 79
Query: 60 GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG-RMEI 118
+ H K++ + V D + C + L LF G E+
Sbjct: 80 TLHNMHTDLLKLFSSLVNSNSTDVKPDRFTV---------TCALKALASLFSNSGLAKEV 130
Query: 119 TSGLFEE-MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFR 177
S + ++ D V N+LI FY++C L ++ F ++ ++D+VSWNAMLAGY+ GG
Sbjct: 131 HSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDIVSWNAMLAGYSQGGSY 190
Query: 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA--- 234
E+ L M + +++PN ++ VL ACAQ + G +H +V I + +
Sbjct: 191 EKCKELFRVM-LSSLEVKPNALTAVSVLQACAQSNDLIFGIEVHRFVNESQIKMDVSLWN 249
Query: 235 --------CGFVICSCSVFNQLSTRDVV-------------------------------V 255
CG + + +F ++ +D +
Sbjct: 250 AVIGLYAKCGSLDYARELFEEMLEKDAITYCSMISGYMVHGFVNQAMDLFREQERPRLPT 309
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------- 307
WN++IS V++ + A+D+ R + +PNTVT+ S+LP + L G
Sbjct: 310 WNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAI 369
Query: 308 ---LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+V A+ID Y +CG + ++ +F + ++L++W +IS Y
Sbjct: 370 RNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYA 419
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 157/305 (51%), Gaps = 19/305 (6%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-GVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W +M+ Y+ G YE+ LF +M+ V+P+ V +AC++ D G +V+ +
Sbjct: 176 SWNAMLAGYSQGGSYEKCKELFRVMLSSLEVKPNALTAVSVLQACAQSNDLIFGIEVHRF 235
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVS 149
+ + + + + ++ L+ KCG ++ LFEEM ++D + S+I Y ++ +
Sbjct: 236 VNESQIKMDVSLWNAVIGLYAKCGSLDYARELFEEMLEKDAITYCSMISGYMVHGFVNQA 295
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + ++ L +WNA+++G +E ++ M+ +PNT++L+ +L +
Sbjct: 296 MDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQ--SHGCRPNTVTLASILPVFS 353
Query: 210 QVKGVKLGKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNS 258
+K GK IHGY +R+ +I+++TA CG++ + VF+Q+ R ++ W S
Sbjct: 354 HFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTS 413
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNAL 318
IISA+ G AL L +++ ++P+ VT SVL AC L + ++N L
Sbjct: 414 IISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWK----IFNVL 469
Query: 319 IDMYG 323
+ YG
Sbjct: 470 LPEYG 474
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 135/270 (50%), Gaps = 25/270 (9%)
Query: 109 LFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAML 168
LF + G+ + + D + + LI FY+K ++ ++ F KI +K++ SWNA+L
Sbjct: 17 LFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKIPRKNIFSWNALL 76
Query: 169 AGYALGGFREEVTNLLDEM-EMIQTDMQPNTISLSGVLAACAQV-KGVKLGKAIHGYVLR 226
Y L ++ L + TD++P+ +++ L A A + L K +H ++LR
Sbjct: 77 ISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCALKALASLFSNSGLAKEVHSFILR 136
Query: 227 HH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDL 275
I + C ++ + +F+++ RD+V WN++++ + + G +L
Sbjct: 137 RGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDIVSWNAMLAGYSQGGSYEKCKEL 196
Query: 276 LRDVIVA-NVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNALIDMYG 323
R ++ + VKPN +T VSVL AC + L G+ FV WNA+I +Y
Sbjct: 197 FRVMLSSLEVKPNALTAVSVLQACAQSNDLIFGIEVHRFVNESQIKMDVSLWNAVIGLYA 256
Query: 324 RCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+CG++ +R++F M K+ +++ MIS Y
Sbjct: 257 KCGSLDYARELFEEMLEKDAITYCSMISGY 286
>gi|255554336|ref|XP_002518208.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542804|gb|EEF44341.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 506
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 104/375 (27%), Positives = 176/375 (46%), Gaps = 63/375 (16%)
Query: 13 VCGVELCAFLGSQLLEVFCN--WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPK 70
+CGV + L LEV W S++ Y E +LF M GV PD +
Sbjct: 74 ICGVPTASKLVFNSLEVKSVPLWNSLISGYVKNQENTESFSLFCQMCSFGVLPDDYTLAT 133
Query: 71 VYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDF 130
+ K C E+ GK ++ + I F D
Sbjct: 134 LSKVCGEIGHLIAGKIIHGLSLKIGFV------------------------------LDT 163
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
+V NSL+ Y KC + F ++ ++ + SWN ++AGY+ G R ++D ++ +
Sbjct: 164 VVANSLMSMYCKCGEFSEALKLFDEMPERSVGSWNVVIAGYSDSGDRNLNQQIVDLVKDM 223
Query: 191 QTD-MQPNTISLSGVLAAC-AQVKGVKLGKAIHGYVLRHHIHLSTACGFV-ICSC----- 242
Q D +PN ++S +L C ++ + G+ +HG+++R+ + L V + SC
Sbjct: 224 QIDGFKPNAFTVSSLLVLCDGDIEKLDYGRELHGFIVRNELDLGCLGSDVHLGSCLIDMY 283
Query: 243 ----------SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN-VKPNTVTI 291
+F+Q+ R+V VW ++I+ +V++G + +AL L ++ + V+PN VT+
Sbjct: 284 SRINRVEKCMQLFDQMKRRNVYVWTAMINGYVQNGALEEALTLFHEMQAKDGVEPNRVTL 343
Query: 292 VSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP- 339
VSVLP C LA LP G L + + NALIDMY +CG++ +R++F
Sbjct: 344 VSVLPICSSLAGLPGGKQIHGYAIRKRLNFDASLSNALIDMYSKCGSLNYARRVFDNGTF 403
Query: 340 HKNLVSWNVMISVYG 354
++ +SW+ +IS YG
Sbjct: 404 RRDAISWSSIISGYG 418
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 144/321 (44%), Gaps = 47/321 (14%)
Query: 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS 93
S+M MY G + E + LF M ++ V + V S+ D + + + D +
Sbjct: 167 NSLMSMYCKCGEFSEALKLFDEMPERSVGSWNVVIA----GYSDSGDRNLNQQIVDLVKD 222
Query: 94 IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-----QDFLVNNSL------------ 136
++ +G + L + C G E++D F+V N L
Sbjct: 223 MQIDGFKPNAFTVSSLLVLC------DGDIEKLDYGRELHGFIVRNELDLGCLGSDVHLG 276
Query: 137 ---IDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
ID Y++ ++ F ++K++++ W AM+ GY G EE L EM+ +
Sbjct: 277 SCLIDMYSRINRVEKCMQLFDQMKRRNVYVWTAMINGYVQNGALEEALTLFHEMQA-KDG 335
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSC 242
++PN ++L VL C+ + G+ GK IHGY +R ++ + CG + +
Sbjct: 336 VEPNRVTLVSVLPICSSLAGLPGGKQIHGYAIRKRLNFDASLSNALIDMYSKCGSLNYAR 395
Query: 243 SVF-NQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
VF N RD + W+SIIS + G+ +A+ L ++ KP+ +T++ V+ AC +
Sbjct: 396 RVFDNGTFRRDAISWSSIISGYGLHGKGEEAVFLYDKMLQLGNKPDQITVIGVISACGRS 455
Query: 302 AALPQGLGTGSFVWNALIDMY 322
+ +GL ++N+ I Y
Sbjct: 456 GLVYEGLR----IYNSAIKCY 472
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 115/263 (43%), Gaps = 39/263 (14%)
Query: 125 EMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLL 184
+ Q+ + LI YA C S F+ ++ K + WN++++GY E +L
Sbjct: 57 DFSQNPFIATKLISAYAICGVPTASKLVFNSLEVKSVPLWNSLISGYVKNQENTESFSLF 116
Query: 185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA---------- 234
+M + P+ +L+ + C ++ + GK IHG L+ L T
Sbjct: 117 --CQMCSFGVLPDDYTLATLSKVCGEIGHLIAGKIIHGLSLKIGFVLDTVVANSLMSMYC 174
Query: 235 -CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG------QVVDALDLLRDVIVANVKPN 287
CG + +F+++ R V WN +I+ + SG Q+V DL++D+ + KPN
Sbjct: 175 KCGEFSEALKLFDEMPERSVGSWNVVIAGYSDSGDRNLNQQIV---DLVKDMQIDGFKPN 231
Query: 288 TVTIVSVLPACL-KLAALPQG----------------LGTGSFVWNALIDMYGRCGAIQK 330
T+ S+L C + L G LG+ + + LIDMY R ++K
Sbjct: 232 AFTVSSLLVLCDGDIEKLDYGRELHGFIVRNELDLGCLGSDVHLGSCLIDMYSRINRVEK 291
Query: 331 SRKIFVLMPHKNLVSWNVMISVY 353
++F M +N+ W MI+ Y
Sbjct: 292 CMQLFDQMKRRNVYVWTAMINGY 314
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 92/203 (45%), Gaps = 34/203 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDK-GVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WT+M+ Y G EE + LF+ M K GV P+ V CS L GK ++ Y
Sbjct: 307 WTAMINGYVQNGALEEALTLFHEMQAKDGVEPNRVTLVSVLPICSSLAGLPGGKQIHGYA 366
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + ++ D ++N+LID Y+KC L +
Sbjct: 367 IR------------------------------KRLNFDASLSNALIDMYSKCGSLNYARR 396
Query: 152 KFSK-IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++D +SW+++++GY L G EE L D+M +Q +P+ I++ GV++AC +
Sbjct: 397 VFDNGTFRRDAISWSSIISGYGLHGKGEEAVFLYDKM--LQLGNKPDQITVIGVISACGR 454
Query: 211 VKGVKLGKAIHGYVLRHHIHLST 233
V G I+ ++ + L T
Sbjct: 455 SGLVYEGLRIYNSAIKCYQLLKT 477
>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Cucumis sativus]
Length = 792
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 92/396 (23%), Positives = 174/396 (43%), Gaps = 75/396 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
+E G ++H H++ C + L + +L ++ +WTSM+
Sbjct: 114 LEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISG 173
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y+ G + + L+ M+ G PDHF + K+CS L D+++ + ++ +++ +F
Sbjct: 174 YSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGA- 232
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D + N+LI Y K + + FS+I K
Sbjct: 233 -----------------------------DLIAQNALISMYTKFSQMADAINVFSRIIIK 263
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
DL+SW +M+AG++ G+ E EM + Q+ QPN +AC+++ G+
Sbjct: 264 DLISWGSMIAGFSQLGYELEALCHFREM-LSQSVYQPNEFVFGSAFSACSKLLEPDCGRQ 322
Query: 220 IHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IHG ++ + + CGF+ + +VF + D+V WN+II+ F
Sbjct: 323 IHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSN 382
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------VWNA 317
++ + + PN VT++S+L AC + L G+ S+ V N+
Sbjct: 383 AKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNS 442
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
L+ MY +C + + ++F + +K ++VSWN +++
Sbjct: 443 LLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTA 478
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 174/347 (50%), Gaps = 56/347 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGV-RPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W SM+ ++ LGY E + F M+ + V +P+ FV + ACS+L + G+ ++
Sbjct: 267 SWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHG- 325
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ IKF + DLF C SL D YAKC +L+ +
Sbjct: 326 -LCIKFGLGS-------DLFAGC---------------------SLCDMYAKCGFLESAR 356
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F I++ DLV+WNA++AG+A +E ++ +M T + PN +++ +L AC++
Sbjct: 357 TVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMR--HTGLVPNDVTVLSLLCACSE 414
Query: 211 VKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTR-DVVVWNS 258
+ G +H Y+++ +L + C + + VF + + D+V WN+
Sbjct: 415 PVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNT 474
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQG 307
+++A ++ Q + L L + + + +KP+ VT+ +VL + ++A+ + G
Sbjct: 475 LLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSG 534
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L V NALI+MY +CG+++ +RK+F + + +++SW+ +I Y
Sbjct: 535 LNLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLIVGYA 581
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/304 (22%), Positives = 141/304 (46%), Gaps = 55/304 (18%)
Query: 74 ACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN 133
ACS L+ G+ ++ +M++ ++ D ++
Sbjct: 107 ACSSLRSLEHGRKIHRHMLTCNYQ------------------------------PDMILQ 136
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
N ++ Y KC LK + F + K++VSW +M++GY+ G + L ++M+++
Sbjct: 137 NHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLY--VQMLRSG 194
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSC 242
P+ + ++ +C+ + KL + +H +VL+ I + T + +
Sbjct: 195 HIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAI 254
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV-KPNTVTIVSVLPACLKL 301
+VF+++ +D++ W S+I+ F + G ++AL R+++ +V +PN S AC KL
Sbjct: 255 NVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKL 314
Query: 302 AA-----------LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ GLG+ F +L DMY +CG ++ +R +F + +LV+WN +I
Sbjct: 315 LEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAII 374
Query: 351 SVYG 354
+ +
Sbjct: 375 AGFA 378
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/345 (22%), Positives = 145/345 (42%), Gaps = 57/345 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +++ + + +E + F M G+ P+ + ACSE G V+ Y++
Sbjct: 370 WNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIV 429
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ F + D V NSL+ Y+KC L +
Sbjct: 430 KMGF------------------------------NLDIPVCNSLLSMYSKCSNLNDALQV 459
Query: 153 FSKIKQK-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F I K D+VSWN +L EV L M + ++P+ ++L+ VL + Q+
Sbjct: 460 FEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLM--FASRIKPDHVTLTNVLVSSGQI 517
Query: 212 KGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSII 260
++G IH ++++ ++L T CG + C+ +F+ + D++ W+S+I
Sbjct: 518 ASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSSLI 577
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW----- 315
+ ++G +A +L R + VKPN +T V +L AC + + +GL +
Sbjct: 578 VGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRI 637
Query: 316 -------NALIDMYGRCGAIQKSRKIFVLMPH-KNLVSWNVMISV 352
+ ++D+ R G + + MP ++V W +++
Sbjct: 638 SPTKEHCSCMVDLLARAGCLDVAEDFIKQMPFVPDVVVWKTLLAA 682
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 87/179 (48%), Gaps = 22/179 (12%)
Query: 198 TISLSGVLAACAQVKGVKLGKAIHGYVL-----------RHHIHLSTACGFVICSCSVFN 246
+++ + ++ AC+ ++ ++ G+ IH ++L H + + CG + + ++F+
Sbjct: 98 SVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFD 157
Query: 247 QLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----LKL 301
+ ++VV W S+IS + R G+ +A+ L ++ + P+ T S++ +C KL
Sbjct: 158 SMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKL 217
Query: 302 A------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
A L G NALI MY + + + +F + K+L+SW MI+ +
Sbjct: 218 ARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFS 276
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 18/138 (13%)
Query: 228 HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
HI L+T F C +V + + + + + + A D+ + + +K
Sbjct: 45 HIRLNTQLAFSPCPLTVHYPHDDKIISLCKKNLHR-----EALKAFDIFQKCSSSPLK-- 97
Query: 288 TVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFV 336
+VT ++ AC L +L G + N ++ MYG+CG+++++R +F
Sbjct: 98 SVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFD 157
Query: 337 LMPHKNLVSWNVMISVYG 354
MP KN+VSW MIS Y
Sbjct: 158 SMPLKNVVSWTSMISGYS 175
>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
Length = 786
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 148/314 (47%), Gaps = 54/314 (17%)
Query: 60 GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEIT 119
G++ + F P V KAC+ KD +GK V+ ++ F
Sbjct: 5 GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGF----------------------- 41
Query: 120 SGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREE 179
D D V NSL+ YAKC + F I + +VSWNA+ + Y E
Sbjct: 42 -------DSDEFVANSLVILYAKCGGFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGE 94
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-----------HH 228
+L +M + + ++PN SLS ++ C ++ G+ IHGY+++
Sbjct: 95 AVSLFHDM--VLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANAL 152
Query: 229 IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288
+ + G + + SVF++++ D+V WN+II+ V AL+LLR++ + + PN
Sbjct: 153 VDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNM 212
Query: 289 VTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVL 337
T+ S L AC +A G +G+ SF+ LIDMY +C ++ +R +F L
Sbjct: 213 FTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKL 272
Query: 338 MPHKNLVSWNVMIS 351
MP +++++WN +IS
Sbjct: 273 MPERDMIAWNAVIS 286
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 96/395 (24%), Positives = 174/395 (44%), Gaps = 75/395 (18%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYN 41
LG QVH ++V G + F+ + L+ ++ +W ++ Y
Sbjct: 28 LGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAIPDRSVVSWNALFSCYV 87
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+ E V+LF+ M+ G+RP+ F + C+ L+D G+ ++ Y+I + +
Sbjct: 88 HSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGY----- 142
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
D D N+L+D YAK L+ + F +I + D+
Sbjct: 143 -------------------------DSDAFSANALVDMYAKVGILEDASSVFDEIAKPDI 177
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSWNA++AG L + LL EM ++ M PN +LS L ACA + +LG+ +H
Sbjct: 178 VSWNAIIAGCVLHEYHHRALELLREMN--KSGMCPNMFTLSSALKACAGMALRELGRQLH 235
Query: 222 GYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
+++ I + + C + + VF + RD++ WN++IS ++ +
Sbjct: 236 SSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDE 295
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLGTGSFVWNALI 319
+A L + + N T+ +VL + L A L G ++V N+LI
Sbjct: 296 EAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLI 355
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
D YG+CG ++ + ++F P +LV + +++ Y
Sbjct: 356 DTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYA 390
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 88/390 (22%), Positives = 169/390 (43%), Gaps = 75/390 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G ++H +LI G + AF + L++++ +W +++ +
Sbjct: 130 GRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVL 189
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
Y+ + L M G+ P+ F KAC+ + +G+ ++ +I +
Sbjct: 190 HEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKM-------- 241
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+M D + LID Y+KC + + F + ++D++
Sbjct: 242 ----------------------DMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMI 279
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+WNA+++G++ EE +L M + N +LS VL + A ++ + + IH
Sbjct: 280 AWNAVISGHSQNEEDEEAASLFPLMH--TEGIGFNQTTLSTVLKSIAALQANYMCRQIHA 337
Query: 223 -----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
YV+ I CG V + VF + D+V++ S+++A+ + GQ +
Sbjct: 338 LSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEE 397
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALID 320
AL L ++ +KP++ S+L AC L+A Q G + F N+L++
Sbjct: 398 ALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVN 457
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
MY +CG+I+ + F +P + +VSW+ MI
Sbjct: 458 MYAKCGSIEDASCAFSRIPVRGIVSWSAMI 487
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 93/394 (23%), Positives = 171/394 (43%), Gaps = 77/394 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVF--CN-------------------WTSMMGMY 40
ELG Q+H+ LI + +FLG L++++ CN W +++ +
Sbjct: 229 ELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGH 288
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+ EE +LF LM +G+ + V K+ + L+ +YM
Sbjct: 289 SQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQ--------ANYMC-------- 332
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
R + L +K G + D V NSLID Y KC +++ + F + D
Sbjct: 333 ---RQIHALSLKSG-----------FEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVD 378
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
LV + +++ YA G EE L +EM ++P++ S +L ACA + + GK +
Sbjct: 379 LVLFTSLVTAYAQDGQGEEALRLY--LEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQV 436
Query: 221 HGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H ++L+ +++ CG + + F+++ R +V W+++I + G
Sbjct: 437 HVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYG 496
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GLGTGSFVWNA 317
+AL L + ++ V PN +T+VSVL AC + + G+ +
Sbjct: 497 KEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYAC 556
Query: 318 LIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ID+ GR G ++ + ++ MP N + W ++
Sbjct: 557 MIDLLGRAGKLEAAMELVNKMPFQANALVWGALL 590
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 284 VKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSR 332
+K N SVL AC L G + FV N+L+ +Y +CG +R
Sbjct: 6 IKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDAR 65
Query: 333 KIFVLMPHKNLVSWNVMISVY 353
+F +P +++VSWN + S Y
Sbjct: 66 SLFDAIPDRSVVSWNALFSCY 86
>gi|357165628|ref|XP_003580444.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
chloroplastic-like [Brachypodium distachyon]
Length = 779
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 164/346 (47%), Gaps = 55/346 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLF-YLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M+ Y G + E ++LF +M KGV D A S+ +D ++G+ ++ Y+
Sbjct: 278 WNTMITGYVQNGQFSEAMDLFIQIMGSKGVPLDVVTFLSAITAASQSQDGKLGQQLHGYL 337
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ K R + ++ N+L+ Y++C + +
Sbjct: 338 M-------------------KGMRSTLP----------VILGNALVVMYSRCGNVHAAFD 368
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +KD+VSWN M+ + F E LL +M ++ + ++L+ VL+A +
Sbjct: 369 LFDQLPEKDIVSWNTMVTAFVQNDFDFE--GLLLVYQMHKSGFVADAVTLTAVLSAASNT 426
Query: 212 KGVKLGKAIHGYVLRHHI----------HLSTACGFVICSCSVFNQLST-RDVVVWNSII 260
+++GK HGY++RH I ++ + G + + VF+ RD V WN++I
Sbjct: 427 GDLQIGKQSHGYLIRHGIEGEGLESYLINMYSKSGHIDMAQRVFDGYGNDRDEVTWNAMI 486
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA------------ALPQGL 308
+ + +SGQ A+ R ++ A V+P +VT+ SVLPAC + AL L
Sbjct: 487 AGYTQSGQPEQAVLAFRAMVEAGVEPTSVTLASVLPACEPVGEGVQAGKQIHSFALRHSL 546
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
T FV AL+DMY +CG I + +F M K+ V++ MIS G
Sbjct: 547 DTNIFVGTALVDMYSKCGEITAAENVFDRMTEKSTVTYTTMISGLG 592
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 141/309 (45%), Gaps = 46/309 (14%)
Query: 14 CGVELCAF-LGSQLLEV-FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKV 71
CG AF L QL E +W +M+ + + E + L Y M G D V
Sbjct: 360 CGNVHAAFDLFDQLPEKDIVSWNTMVTAFVQNDFDFEGLLLVYQMHKSGFVADAVTLTAV 419
Query: 72 YKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFL 131
A S D ++GK + Y+I EG ++ L++++ K G +++ +F+ D
Sbjct: 420 LSAASNTGDLQIGKQSHGYLIRHGIEGEG-LESYLINMYSKSGHIDMAQRVFDGYGND-- 476
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
+D V+WNAM+AGY G E+ +L M++
Sbjct: 477 ---------------------------RDEVTWNAMIAGYTQSGQPEQA--VLAFRAMVE 507
Query: 192 TDMQPNTISLSGVLAACAQV-KGVKLGKAIHGYVLRH----HIHLSTA-------CGFVI 239
++P +++L+ VL AC V +GV+ GK IH + LRH +I + TA CG +
Sbjct: 508 AGVEPTSVTLASVLPACEPVGEGVQAGKQIHSFALRHSLDTNIFVGTALVDMYSKCGEIT 567
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ +VF++++ + V + ++IS + G AL L + +KP+ VT ++ + AC
Sbjct: 568 AAENVFDRMTEKSTVTYTTMISGLGQHGFGDRALFLFYSMQDNGLKPDAVTFLAAISACN 627
Query: 300 KLAALPQGL 308
+ +GL
Sbjct: 628 YSGLVDEGL 636
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 78/345 (22%), Positives = 151/345 (43%), Gaps = 53/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++G Y G E + +F M++ G+RP V+ A
Sbjct: 175 SWNTLVGWYVKTGRPYEALEMFMRMLEDGIRPTPVSFVNVFPA----------------- 217
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
A P F+ M I G+ E D V +S I +++ ++ +
Sbjct: 218 --------AASDDPSWPFFLYG--MLIKHGV--EYVSDLFVVSSAIAMFSEIGDVQSARM 265
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +K++ WN M+ GY G E +L ++ M + + ++ + A +Q
Sbjct: 266 VFDHAAKKNIEVWNTMITGYVQNGQFSEAMDLFIQI-MGSKGVPLDVVTFLSAITAASQS 324
Query: 212 KGVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ KLG+ +HGY+++ + + + CG V + +F+QL +D+V WN++
Sbjct: 325 QDGKLGQQLHGYLMKGMRSTLPVILGNALVVMYSRCGNVHAAFDLFDQLPEKDIVSWNTM 384
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGT--------- 310
++AFV++ + L L+ + + + VT+ +VL A L G +
Sbjct: 385 VTAFVQNDFDFEGLLLVYQMHKSGFVADAVTLTAVLSAASNTGDLQIGKQSHGYLIRHGI 444
Query: 311 -GSFVWNALIDMYGRCGAIQKSRKIFVLMPH-KNLVSWNVMISVY 353
G + + LI+MY + G I ++++F + ++ V+WN MI+ Y
Sbjct: 445 EGEGLESYLINMYSKSGHIDMAQRVFDGYGNDRDEVTWNAMIAGY 489
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 123/259 (47%), Gaps = 44/259 (16%)
Query: 131 LVNNSLIDFYAKC-RY----LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
++ NSL++ YA C RY + V F ++++VSWN ++ Y G E +
Sbjct: 138 VLRNSLLNLYASCARYRHGGVDVVRRLFDATPKRNVVSWNTLVGWYVKTGRPYEALEMF- 196
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQ--------VKGVKLGKAIHG----YVLRHHIHLST 233
M M++ ++P +S V A A + G+ + + +V+ I + +
Sbjct: 197 -MRMLEDGIRPTPVSFVNVFPAAASDDPSWPFFLYGMLIKHGVEYVSDLFVVSSAIAMFS 255
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP-NTVTIV 292
G V + VF+ + +++ VWN++I+ +V++GQ +A+DL ++ + P + VT +
Sbjct: 256 EIGDVQSARMVFDHAAKKNIEVWNTMITGYVQNGQFSEAMDLFIQIMGSKGVPLDVVTFL 315
Query: 293 SVLPACLK------------------LAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKI 334
S + A + + LP LG NAL+ MY RCG + + +
Sbjct: 316 SAITAASQSQDGKLGQQLHGYLMKGMRSTLPVILG------NALVVMYSRCGNVHAAFDL 369
Query: 335 FVLMPHKNLVSWNVMISVY 353
F +P K++VSWN M++ +
Sbjct: 370 FDQLPEKDIVSWNTMVTAF 388
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 101/220 (45%), Gaps = 31/220 (14%)
Query: 165 NAMLAGYALGGFREEVTNLLDEM-EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
N +L Y G + L + + + + + S L ACA+ + ++LG+++H +
Sbjct: 66 NVLLIAYVAGALPDHALGLYGVLNHAARPPPRSDHYTYSCALTACARSRRLRLGRSVHAH 125
Query: 224 VLRHH-------------IHLSTAC-----GFVICSCSVFNQLSTRDVVVWNSIISAFVR 265
+LR ++L +C G V +F+ R+VV WN+++ +V+
Sbjct: 126 LLRRARSLPDTAVLRNSLLNLYASCARYRHGGVDVVRRLFDATPKRNVVSWNTLVGWYVK 185
Query: 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC----------LKLAALPQGLGTGS--F 313
+G+ +AL++ ++ ++P V+ V+V PA L + G+ S F
Sbjct: 186 TGRPYEALEMFMRMLEDGIRPTPVSFVNVFPAAASDDPSWPFFLYGMLIKHGVEYVSDLF 245
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V ++ I M+ G +Q +R +F KN+ WN MI+ Y
Sbjct: 246 VVSSAIAMFSEIGDVQSARMVFDHAAKKNIEVWNTMITGY 285
>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 865
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 100/396 (25%), Positives = 183/396 (46%), Gaps = 52/396 (13%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNVLG 44
+VH CGV F+G+ L+ + +WTS+ Y G
Sbjct: 185 EVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCG 244
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
+ + +++F M GV+P+ + AC+ELKD + GK+++ + + N V
Sbjct: 245 FPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCS 304
Query: 105 PLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK---- 159
L+ L+ KC + +F+ M +D + N ++ Y K + + F K+ +
Sbjct: 305 ALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRA 364
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D +WNA++ G G EE + +M+ + +PN I++S +L AC+ + +++GK
Sbjct: 365 DEATWNAVIGGCMENGRSEEAVEMFRKMQ--KMGFKPNEITISSILPACSFSENLRMGKE 422
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH YV RH +++ CG + S +VF+ + +DVV WN++I A G
Sbjct: 423 IHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGN 482
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTGSFV------WN 316
+AL L ++++ V+PN+VT VL C + +G +G V ++
Sbjct: 483 GKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYS 542
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMIS 351
++D+Y R G + ++ K MP + S W +++
Sbjct: 543 CVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLA 578
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 107/223 (47%), Gaps = 24/223 (10%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I Q D + + +++ G E + ++ + ++P+ ACA
Sbjct: 121 FDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQ--ERGIKPDMPVFLAAAKACAVSG 178
Query: 213 GVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
K +H +V IH C V + VF+ L RDVV W S+ S
Sbjct: 179 DALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSS 238
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGT 310
+V+ G +D+ R++ + VKPN +T+ S+LPAC +L A+ G+
Sbjct: 239 CYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVV 298
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
FV +AL+ +Y +C +++++R +F LMPH+++VSWN +++ Y
Sbjct: 299 NLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAY 341
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC----- 298
+F+ + D +++ISA G +A+ + + +KP+ ++ AC
Sbjct: 120 LFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGD 179
Query: 299 -LKLAALPQ-----GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
L++ + G+ + FV NALI YG+C ++ +R++F + +++VSW + S
Sbjct: 180 ALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSC 239
Query: 353 Y 353
Y
Sbjct: 240 Y 240
>gi|224057531|ref|XP_002299253.1| predicted protein [Populus trichocarpa]
gi|222846511|gb|EEE84058.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 103/387 (26%), Positives = 171/387 (44%), Gaps = 90/387 (23%)
Query: 4 GIQVHAHLIVCGVELCAF-LGSQLLEVFC-----------------------NWTSMMGM 39
G QVHA L+ G +L L S+L+ ++ NW +
Sbjct: 43 GKQVHAWLVTRGTDLRILSLNSKLVGMYASCGDVKSATLVFKRIRNPNVFALNWMVLASA 102
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ GYY+E + F M D + + V KA L D GK+V+ + + FE +
Sbjct: 103 FE--GYYKEAIGYFCSMKDSVFIYNKYTFSIVLKAFVGLLDLNKGKEVHSMVKQLGFESD 160
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
CV N+L+D Y+KC + + F ++ ++
Sbjct: 161 VCVA------------------------------NALVDMYSKCGCIGYARTVFDRMAKR 190
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSW +M++GY G EE L + M++ ++PN + + +
Sbjct: 191 DIVSWTSMISGYCNVGKIEEALVLFERMKL--EGLEPNDFTWNAL--------------- 233
Query: 220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
I GY R + F + S L D+V WN++I+ FV+ + DA L +D+
Sbjct: 234 ISGYARRG----DSDGAFSLLSKMTREGL-VPDLVTWNAMIAGFVQGERAGDAFKLFQDM 288
Query: 280 IVANVKPNTVTIVSVLPACLKLAALPQGLG------------TGSFVWNALIDMYGRCGA 327
+V VKPN VT+ +LPAC ++++ +G + +F+ +ALIDMY CG+
Sbjct: 289 LVLGVKPNLVTVAGLLPACGMVSSIQRGRAIHGLVYRLEFDISNAFIASALIDMYSECGS 348
Query: 328 IQKSRKIFVLMPHKNLVSWNVMISVYG 354
+++R +F + +KN+ SWN MI YG
Sbjct: 349 FKEARTVFEKIHNKNVASWNAMIGCYG 375
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 23/176 (13%)
Query: 201 LSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS------------TACGFVICSCSVFNQL 248
++G+L C + K ++ GK +H +++ L +CG V + VF ++
Sbjct: 27 IAGLLKQCLKFKTLRGGKQVHAWLVTRGTDLRILSLNSKLVGMYASCGDVKSATLVFKRI 86
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
+V N ++ A G +A+ + + N T VL A + L L +G
Sbjct: 87 RNPNVFALNWMVLASAFEGYYKEAIGYFCSMKDSVFIYNKYTFSIVLKAFVGLLDLNKGK 146
Query: 309 GTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
S V NAL+DMY +CG I +R +F M +++VSW MIS Y
Sbjct: 147 EVHSMVKQLGFESDVCVANALVDMYSKCGCIGYARTVFDRMAKRDIVSWTSMISGY 202
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 116/296 (39%), Gaps = 62/296 (20%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY--------RV 83
+WTSM+ Y +G EE + LF M +G+ P+ F + + D ++
Sbjct: 194 SWTSMISGYCNVGKIEEALVLFERMKLEGLEPNDFTWNALISGYARRGDSDGAFSLLSKM 253
Query: 84 GKD-------VYDYMISIKFEGNAC--------------VKRPLLD---LFIKCG----- 114
++ ++ MI+ +G VK L+ L CG
Sbjct: 254 TREGLVPDLVTWNAMIAGFVQGERAGDAFKLFQDMLVLGVKPNLVTVAGLLPACGMVSSI 313
Query: 115 -RMEITSGLFEEMDQDF---LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAG 170
R GL ++ D + ++LID Y++C K + F KI K++ SWNAM+
Sbjct: 314 QRGRAIHGLVYRLEFDISNAFIASALIDMYSECGSFKEARTVFEKIHNKNVASWNAMIGC 373
Query: 171 YALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH 230
Y G L + M +Q N ++L VL+AC+ GYV +
Sbjct: 374 YGKHGMVNTSIQLFERMH--GEGIQANDVTLLCVLSACSH----------SGYVEK---- 417
Query: 231 LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286
G I + R + ++ RSG++VDA +L++++ + K
Sbjct: 418 -----GLEIFWSMKERYMVDRKKEHYACVVDMLSRSGRLVDAYELVKEMPIEVTKS 468
>gi|449508637|ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570-like [Cucumis sativus]
Length = 594
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 151/346 (43%), Gaps = 56/346 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WT+M+ + +Y + +F M+ V+P+ F V KAC +K
Sbjct: 76 TWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQPNAFTMSSVLKACKGMKA----------- 124
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYA-KCRYLKVSH 150
+ CG + + +D+ V N+L+D YA C + +
Sbjct: 125 -------------------LSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDAL 165
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F+ I K VSW ++AG+ G + + LL +M+ D+ PN+ S S ACA
Sbjct: 166 SVFNDIPLKTAVSWTTLIAGFTHRG--DGYSGLLAFRQMLLEDVGPNSFSFSIAARACAS 223
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ GK IH V ++ +H C ++ + F +L+ ++++ WN++
Sbjct: 224 ISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTL 283
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGL 308
I+ + RS ++L L + KPN T S+ AC LA L +G
Sbjct: 284 IAGYERSDSS-ESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGF 342
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ N+LIDMY +CG+I S K+F MP ++LVSW M+ YG
Sbjct: 343 DKNVALINSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYG 388
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 107/224 (47%), Gaps = 25/224 (11%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F++I ++D+V+W AM+ G+ + + EM +++++QPN ++S VL AC +K
Sbjct: 66 FNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEM--LRSEVQPNAFTMSSVLKACKGMK 123
Query: 213 GVKLGKAIHGYVLRHHIHLS------------TACGFVICSCSVFNQLSTRDVVVWNSII 260
+ G H +H I S +C + + SVFN + + V W ++I
Sbjct: 124 ALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDIPLKTAVSWTTLI 183
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL-----------AALPQGLG 309
+ F G L R +++ +V PN+ + AC + A GL
Sbjct: 184 AGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLH 243
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ V N+++DMY RC + +++ F + KNL++WN +I+ Y
Sbjct: 244 CDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGY 287
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/336 (20%), Positives = 144/336 (42%), Gaps = 56/336 (16%)
Query: 27 LEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKD 86
L+ +WT+++ + G + F M+ + V P+ F +AC+ + Y GK
Sbjct: 173 LKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYSCGKQ 232
Query: 87 VYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL 146
++ ++ G C D V NS++D Y +C YL
Sbjct: 233 IH---AAVTKYGLHC---------------------------DAPVMNSILDMYCRCNYL 262
Query: 147 KVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
+ F ++ +K+L++WN ++AGY E ++ +M +PN + + + A
Sbjct: 263 CDAKRCFGELTEKNLITWNTLIAGYERSDSSESLSLFF---QMGSEGYKPNCFTFTSITA 319
Query: 207 ACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVV 255
ACA + + G+ +HG ++R I + CG + S +F + RD+V
Sbjct: 320 ACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSISDSHKLFCDMPGRDLVS 379
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL------- 308
W +++ + G +A+ L +++ + ++P+ + + VL C + +GL
Sbjct: 380 WTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSML 439
Query: 309 -----GTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
++ ++D+ GR G ++++ ++ MP
Sbjct: 440 EDYNINPDQEIYRCVVDLLGRAGRVEEAFQLVENMP 475
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 86/381 (22%), Positives = 150/381 (39%), Gaps = 95/381 (24%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G Q+HA + G+ A + + +L+++C W +++ Y
Sbjct: 230 GKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGYER 289
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
E + +LF+ M +G +P+ F + AC+ L G+ V+ ++ F+ N +
Sbjct: 290 SDSSESL-SLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVAL 348
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L+D++ KCG S+ D SH F + +DLV
Sbjct: 349 INSLIDMYAKCG--------------------SISD----------SHKLFCDMPGRDLV 378
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG-KAIH 221
SW M+ GY G+ +E L D EM+Q+ +QP+ I GVL C+ V G K
Sbjct: 379 SWTTMMIGYGAHGYGKEAVKLFD--EMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFR 436
Query: 222 GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281
+ ++I+ D ++ ++ R+G+V +A L+ ++
Sbjct: 437 SMLEDYNIN--------------------PDQEIYRCVVDLLGRAGRVEEAFQLVENM-- 474
Query: 282 ANVKPNTVTIVSVLPAC--LKLAAL------------PQGLGTGSFVWNALIDMYGRCGA 327
+P+ ++L AC KL+ L P GT + + + G+ G
Sbjct: 475 -PFEPDESVWGALLGACKAYKLSNLGNLAAQRVLDRRPNMAGT-YLLLSKIYAAEGKWGE 532
Query: 328 IQKSRKIFVLMPHKNLV--SW 346
K RK+ M K V SW
Sbjct: 533 FAKMRKLMKGMNKKKEVGKSW 553
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 12/130 (9%)
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
G +C++FN++ RDVV W ++I F A + +++ + V+PN T+ SVL
Sbjct: 57 GLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQPNAFTMSSVL 116
Query: 296 PACLKLAALP-----------QGLGTGSFVWNALIDMY-GRCGAIQKSRKIFVLMPHKNL 343
AC + AL G+ +V NAL+DMY C + + +F +P K
Sbjct: 117 KACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDIPLKTA 176
Query: 344 VSWNVMISVY 353
VSW +I+ +
Sbjct: 177 VSWTTLIAGF 186
>gi|449435950|ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570-like [Cucumis sativus]
Length = 606
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 151/346 (43%), Gaps = 56/346 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WT+M+ + +Y + +F M+ V+P+ F V KAC +K
Sbjct: 76 TWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQPNAFTMSSVLKACKGMKA----------- 124
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYA-KCRYLKVSH 150
+ CG + + +D+ V N+L+D YA C + +
Sbjct: 125 -------------------LSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDAL 165
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F+ I K VSW ++AG+ G + + LL +M+ D+ PN+ S S ACA
Sbjct: 166 SVFNDIPLKTAVSWTTLIAGFTHRG--DGYSGLLAFRQMLLEDVGPNSFSFSIAARACAS 223
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ GK IH V ++ +H C ++ + F +L+ ++++ WN++
Sbjct: 224 ISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTL 283
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGL 308
I+ + RS ++L L + KPN T S+ AC LA L +G
Sbjct: 284 IAGYERSDSS-ESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGF 342
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ N+LIDMY +CG+I S K+F MP ++LVSW M+ YG
Sbjct: 343 DKNVALINSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYG 388
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 107/224 (47%), Gaps = 25/224 (11%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F++I ++D+V+W AM+ G+ + + EM +++++QPN ++S VL AC +K
Sbjct: 66 FNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEM--LRSEVQPNAFTMSSVLKACKGMK 123
Query: 213 GVKLGKAIHGYVLRHHIHLS------------TACGFVICSCSVFNQLSTRDVVVWNSII 260
+ G H +H I S +C + + SVFN + + V W ++I
Sbjct: 124 ALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDIPLKTAVSWTTLI 183
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL-----------AALPQGLG 309
+ F G L R +++ +V PN+ + AC + A GL
Sbjct: 184 AGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLH 243
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ V N+++DMY RC + +++ F + KNL++WN +I+ Y
Sbjct: 244 CDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGY 287
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/336 (20%), Positives = 144/336 (42%), Gaps = 56/336 (16%)
Query: 27 LEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKD 86
L+ +WT+++ + G + F M+ + V P+ F +AC+ + Y GK
Sbjct: 173 LKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYSCGKQ 232
Query: 87 VYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL 146
++ ++ G C D V NS++D Y +C YL
Sbjct: 233 IH---AAVTKYGLHC---------------------------DAPVMNSILDMYCRCNYL 262
Query: 147 KVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
+ F ++ +K+L++WN ++AGY E ++ +M +PN + + + A
Sbjct: 263 CDAKRCFGELTEKNLITWNTLIAGYERSDSSESLSLFF---QMGSEGYKPNCFTFTSITA 319
Query: 207 ACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVV 255
ACA + + G+ +HG ++R I + CG + S +F + RD+V
Sbjct: 320 ACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSISDSHKLFCDMPGRDLVS 379
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL------- 308
W +++ + G +A+ L +++ + ++P+ + + VL C + +GL
Sbjct: 380 WTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSML 439
Query: 309 -----GTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
++ ++D+ GR G ++++ ++ MP
Sbjct: 440 EDYNINPDQEIYRCVVDLLGRAGRVEEAFQLVENMP 475
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 86/381 (22%), Positives = 150/381 (39%), Gaps = 95/381 (24%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G Q+HA + G+ A + + +L+++C W +++ Y
Sbjct: 230 GKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGYER 289
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
E + +LF+ M +G +P+ F + AC+ L G+ V+ ++ F+ N +
Sbjct: 290 SDSSESL-SLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVAL 348
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L+D++ KCG S+ D SH F + +DLV
Sbjct: 349 INSLIDMYAKCG--------------------SISD----------SHKLFCDMPGRDLV 378
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG-KAIH 221
SW M+ GY G+ +E L D EM+Q+ +QP+ I GVL C+ V G K
Sbjct: 379 SWTTMMIGYGAHGYGKEAVKLFD--EMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFR 436
Query: 222 GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281
+ ++I+ D ++ ++ R+G+V +A L+ ++
Sbjct: 437 SMLEDYNIN--------------------PDQEIYRCVVDLLGRAGRVEEAFQLVENM-- 474
Query: 282 ANVKPNTVTIVSVLPAC--LKLAAL------------PQGLGTGSFVWNALIDMYGRCGA 327
+P+ ++L AC KL+ L P GT + + + G+ G
Sbjct: 475 -PFEPDESVWGALLGACKAYKLSNLGNLAAQRVLDRRPNMAGT-YLLLSKIYAAEGKWGE 532
Query: 328 IQKSRKIFVLMPHKNLV--SW 346
K RK+ M K V SW
Sbjct: 533 FAKMRKLMKGMNKKKEVGKSW 553
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 12/130 (9%)
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
G +C++FN++ RDVV W ++I F A + +++ + V+PN T+ SVL
Sbjct: 57 GLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQPNAFTMSSVL 116
Query: 296 PACLKLAALP-----------QGLGTGSFVWNALIDMY-GRCGAIQKSRKIFVLMPHKNL 343
AC + AL G+ +V NAL+DMY C + + +F +P K
Sbjct: 117 KACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDIPLKTA 176
Query: 344 VSWNVMISVY 353
VSW +I+ +
Sbjct: 177 VSWTTLIAGF 186
>gi|242033481|ref|XP_002464135.1| hypothetical protein SORBIDRAFT_01g012973 [Sorghum bicolor]
gi|241917989|gb|EER91133.1| hypothetical protein SORBIDRAFT_01g012973 [Sorghum bicolor]
Length = 576
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 92/395 (23%), Positives = 179/395 (45%), Gaps = 72/395 (18%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G +HAH G+ F+ + L++++ W +M+ Y
Sbjct: 118 GRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYAN 177
Query: 43 LG-YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G Y+ I +L + G+RP+ + ++ G V+ Y + + N
Sbjct: 178 HGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQN-- 235
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
++ L+ +L+D YAKC++L + F + ++
Sbjct: 236 -------------------------EEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNE 270
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
V+W+A++ G+ L E NL +M +++ + S++ L CA + +++G +H
Sbjct: 271 VTWSALIGGFVLCDRMTEAFNLFKDM-LVEGMCFLSATSVASALRVCASLADLRMGTQLH 329
Query: 222 GYVLRHHIHLSTACGFVICS-----------CSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
+ + IH G + S +F++++ +D + + +++S +V++G+
Sbjct: 330 ALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAE 389
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNALI 319
+A + + + NV+P+ T+VS++PAC LAAL +GL + + N+LI
Sbjct: 390 EAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLI 449
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
DMY +CG I SR++F MP +++VSWN MI+ YG
Sbjct: 450 DMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYG 484
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/348 (24%), Positives = 163/348 (46%), Gaps = 59/348 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
+ +++ Y+ G + ++L+ M+ V P+ + P V KACS L D G+ ++ +
Sbjct: 67 YNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKACSALADLCAGRTIHAHAA 126
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
++ + V L+DL+I+C R + +
Sbjct: 127 AVGLHTDLFVSTALIDLYIRCARFGPAANV------------------------------ 156
Query: 153 FSKIKQKDLVSWNAMLAGYALGG-FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+K+ +D+V+WNAMLAGYA G + + +LLD + + ++PN +L +L AQ
Sbjct: 157 FAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQD--RGGLRPNASTLVSLLPLLAQH 214
Query: 212 KGVKLGKAIHGYVLRHHIH-------LSTA-------CGFVICSCSVFNQLSTRDVVVWN 257
+ G ++H Y LR ++ + TA C ++ +C VF+ ++ R+ V W+
Sbjct: 215 GALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWS 274
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANV-KPNTVTIVSVLPACLKLAALPQGLGTGSFV-- 314
++I FV ++ +A +L +D++V + + ++ S L C LA L G + +
Sbjct: 275 ALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAK 334
Query: 315 ---------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
N+L+ MY + G I ++ +F + K+ +S+ ++S Y
Sbjct: 335 SGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGY 382
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 122/279 (43%), Gaps = 44/279 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGV-RPDHFVCPKVYKACSELKDYRVGKDVYDY 90
W++++G + + E NLF M+ +G+ + C+ L D R+G ++
Sbjct: 272 TWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHA- 330
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
L K G + D NSL+ YAK + +
Sbjct: 331 ------------------LLAKSG-----------IHADLTAGNSLLSMYAKAGLINEAT 361
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F +I KD +S+ A+L+GY G EE + +M+ ++QP+ ++ ++ AC+
Sbjct: 362 MLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQ--ACNVQPDIATMVSLIPACSH 419
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ ++ G+ HG V+ + L T+ CG + S VF+++ RD+V WN++
Sbjct: 420 LAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTM 479
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
I+ + G +A L + +P+ VT + ++ AC
Sbjct: 480 IAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAAC 518
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 104/224 (46%), Gaps = 28/224 (12%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F +I D ++NA++ Y+ G +L M + + PN + VL AC+ +
Sbjct: 56 FDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFR--VPPNKYTFPFVLKACSALA 113
Query: 213 GVKLGKAIHGYVLRHHIH----LSTA-------CGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ G+ IH + +H +STA C + +VF ++ RDVV WN++++
Sbjct: 114 DLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLA 173
Query: 262 AFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------- 313
+ G A+ L D+ ++PN T+VS+LP + AL QG ++
Sbjct: 174 GYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLD 233
Query: 314 -------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ AL+DMY +C + + ++F M +N V+W+ +I
Sbjct: 234 QNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALI 277
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 68/141 (48%), Gaps = 15/141 (10%)
Query: 225 LRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV 284
L HI A G + + VF+++ D +N++I A+ G A+DL R ++ V
Sbjct: 40 LEQHI----ARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRV 95
Query: 285 KPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRK 333
PN T VL AC LA A GL T FV ALID+Y RC +
Sbjct: 96 PPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAAN 155
Query: 334 IFVLMPHKNLVSWNVMISVYG 354
+F MP +++V+WN M++ Y
Sbjct: 156 VFAKMPMRDVVAWNAMLAGYA 176
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 96/241 (39%), Gaps = 57/241 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ +G Q+HA L G+ G+ LL ++ ++ +++
Sbjct: 322 LRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSG 381
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI--SIKFE 97
Y G EE +F M V+PD + ACS L + G+ + +I + E
Sbjct: 382 YVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALE 441
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
+ C NSLID YAKC + +S F K+
Sbjct: 442 TSIC--------------------------------NSLIDMYAKCGRIDLSRQVFDKMP 469
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+D+VSWN M+AGY + G +E T L + M +P+ ++ ++AAC+ V G
Sbjct: 470 ARDIVSWNTMIAGYGIHGLGKEATTLF--LSMKNQGFEPDDVTFICLIAACSHSGLVTEG 527
Query: 218 K 218
K
Sbjct: 528 K 528
>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 959
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 116/459 (25%), Positives = 197/459 (42%), Gaps = 116/459 (25%)
Query: 6 QVHAHLIVCGVELCAFLGSQLL-------------EVFCN--------WTSMMGMYNVLG 44
Q+HA ++VCG+ LGS++L +FC W ++ +++LG
Sbjct: 97 QIHAKVLVCGMNGSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSMLG 156
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE-----GN 99
++ + F+ M+ V PD + P V KAC L + + K V++ S+ F G+
Sbjct: 157 CFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIGS 216
Query: 100 ACVK--------------------------RPLLDLFIKCGRMEITSGLFEEM------- 126
+ +K +L+ ++K G G F+EM
Sbjct: 217 SLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKP 276
Query: 127 ---------------------------------DQDFLVNNSLIDFYAKCRYLKVSHCKF 153
+ D V N++I Y+KC L + F
Sbjct: 277 NSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIF 336
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG 213
+ Q D V+WN ++AGY GF +E L M + + ++ ++I+ + L + +
Sbjct: 337 DIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAM--VTSGVKLDSITFASFLPSVLKSGS 394
Query: 214 VKLGKAIHGYVLRH----HIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNSIISA 262
+K K +H Y++RH ++L +A G V +C F Q + DV V ++IS
Sbjct: 395 LKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISG 454
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLGTG 311
+V +G V+AL+L R +I + PN +T+ SVLPAC LA+ L +GL
Sbjct: 455 YVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKKGLENV 514
Query: 312 SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
V +++ MY + G + + + F MP K+ V WN+MI
Sbjct: 515 CQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMI 553
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/394 (25%), Positives = 176/394 (44%), Gaps = 75/394 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
GIQ+H +I G E + + ++ ++ W ++ Y
Sbjct: 297 GIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQ 356
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G+ +E V LF M+ GV+ D + + + K+V+ Y++ + +
Sbjct: 357 NGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVYL 416
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
K L+D++ K G +E+ F++ N+L+D V+ C
Sbjct: 417 KSALVDIYFKGGDVEMACKTFQQ--------NTLVD---------VAVC----------- 448
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
AM++GY L G E NL + IQ M PN ++++ VL ACA + +KLGK +H
Sbjct: 449 --TAMISGYVLNGLNVEALNLFRWL--IQEGMVPNCLTMASVLPACAALASLKLGKELHC 504
Query: 223 YVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+L+ + ++ G + + F ++ +D V WN +I +F ++G+
Sbjct: 505 DILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPEL 564
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALID 320
A+DL R + + K ++V++ + L AC AL G + +FV + LID
Sbjct: 565 AIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVVRNSFISDTFVASTLID 624
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
MY +CG + +R +F +M KN VSWN +I+ YG
Sbjct: 625 MYSKCGKLALARSVFDMMDWKNEVSWNSIIAAYG 658
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 89/378 (23%), Positives = 169/378 (44%), Gaps = 76/378 (20%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCNW---------------------TSMMGMYNVLG 44
+VH++++ GV +L S L++++ T+M+ Y + G
Sbjct: 400 EVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNG 459
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
E +NLF +I +G+ P+ V AC+ L ++GK+++ ++ E N C
Sbjct: 460 LNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKKGLE-NVCQ-- 516
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
V +S+ YAK L +++ F ++ KD V W
Sbjct: 517 ---------------------------VGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCW 549
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
N M+ ++ G E +L +M T +++SLS L+ACA + GK +H +V
Sbjct: 550 NLMIVSFSQNGKPELAIDLFRQMGTSGTKF--DSVSLSATLSACANYPALYYGKELHCFV 607
Query: 225 LRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
+R+ I + + CG + + SVF+ + ++ V WNSII+A+ G+ + L
Sbjct: 608 VRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVSWNSIIAAYGNHGRPRECL 667
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL----------GTGSFV--WNALIDM 321
DL +++ A ++P+ VT + ++ AC + +G+ G + + + ++D+
Sbjct: 668 DLFHEMVEAGIQPDHVTFLVIMSACGHAGLVDEGIYYFRCMTEEYGICARMEHFACMVDL 727
Query: 322 YGRCGAIQKSRKIFVLMP 339
YGR G + ++ MP
Sbjct: 728 YGRAGRLHEAFDTIKSMP 745
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 121/250 (48%), Gaps = 24/250 (9%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
M+ + + ++ Y CR K F +++ + WN ++ G+++ G + L+
Sbjct: 107 MNGSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSMLGCFDFA--LMF 164
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTA 234
M+ +++ P+ + V+ AC + V L K +H ++ I L T
Sbjct: 165 FFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIGSSLIKLYTD 224
Query: 235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV 294
G++ + +F++L RD ++WN +++ +V++G AL +++ + VKPN+V+ V +
Sbjct: 225 NGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCL 284
Query: 295 LPAC-----------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
L C L + G + V N +I MY +CG + +RKIF +MP +
Sbjct: 285 LSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDT 344
Query: 344 VSWNVMISVY 353
V+WN +I+ Y
Sbjct: 345 VTWNGLIAGY 354
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/238 (20%), Positives = 95/238 (39%), Gaps = 53/238 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
++LG ++H ++ G+E +GS + ++ W M+
Sbjct: 496 LKLGKELHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVS 555
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
++ G E ++LF M G + D AC+ GK+++ +++ F +
Sbjct: 556 FSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVVRNSFISD 615
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V L+D++ KCG++ + +F+ MD K
Sbjct: 616 TFVASTLIDMYSKCGKLALARSVFDMMD------------------------------WK 645
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+ VSWN+++A Y G E +L EM++ +QP+ ++ +++AC V G
Sbjct: 646 NEVSWNSIIAAYGNHGRPRECLDLFH--EMVEAGIQPDHVTFLVIMSACGHAGLVDEG 701
>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 97/341 (28%), Positives = 166/341 (48%), Gaps = 56/341 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ +++ ++L+ M G P++F P V KAC+ D R+G ++ ++
Sbjct: 82 WNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLV 141
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
++ + VK LL L++KC + LKV
Sbjct: 142 KAGYDHDVFVKTSLLSLYVKCDNFDDA--------------------------LKV---- 171
Query: 153 FSKIKQKDLVSWNAMLAGY-ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F I K++VSW A++ GY + G FRE + +EM ++P++ SL VLAACA++
Sbjct: 172 FDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEM---GLKPDSFSLVKVLAACARL 228
Query: 212 KGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
G+ I Y+ + ++ ++T+ CG + + +F+ + +D+V W+++I
Sbjct: 229 GDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMI 288
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS------FV 314
+ +G ALDL + N+KP+ T+V VL AC L AL G+ S F+
Sbjct: 289 QGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFL 348
Query: 315 WN-----ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
N ALIDMY +CG++ ++ +IF M K+ V WN M+
Sbjct: 349 SNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMM 389
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/395 (23%), Positives = 172/395 (43%), Gaps = 77/395 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ LG+++H+ L+ G + F+ + LL ++ +WT+++
Sbjct: 130 VRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITG 189
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G++ E + F +++ G++PD F KV AC+ L D
Sbjct: 190 YISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGD------------------- 230
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
C +D +I SG M ++ V SL+D Y KC L+ ++ FS + +K
Sbjct: 231 -CTSGEWIDRYIS------DSG----MGRNVFVATSLLDMYVKCGNLERANLIFSAMPEK 279
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSW+ M+ GYA G ++ +L +M+ +++P+ ++ GVL+ACA + + LG
Sbjct: 280 DIVSWSTMIQGYAFNGLPQQALDLFFQMQ--SENLKPDCYTMVGVLSACATLGALDLGIW 337
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+ R+ I + + CG V + +F + +D VVWN+++ +G
Sbjct: 338 ASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGH 397
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWN 316
L V ++P+ T + +L C + +G L +
Sbjct: 398 AKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYG 457
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMI 350
++D+ GR G + ++ ++ MP K N V W ++
Sbjct: 458 CMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALL 492
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 113/224 (50%), Gaps = 24/224 (10%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
FS++K+ ++ WN M+ G ++ +L M PN ++ VL ACA+
Sbjct: 71 FSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMR--GGGFLPNNFTIPFVLKACARKL 128
Query: 213 GVKLGKAIHGYVLR----HHIHLSTACGFVICSCS-------VFNQLSTRDVVVWNSIIS 261
V+LG IH +++ H + + T+ + C VF+ + ++VV W +II+
Sbjct: 129 DVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIIT 188
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGT 310
++ SG +A+ + ++ +KP++ ++V VL AC +L G +G
Sbjct: 189 GYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGR 248
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
FV +L+DMY +CG ++++ IF MP K++VSW+ MI Y
Sbjct: 249 NVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYA 292
>gi|356529889|ref|XP_003533519.1| PREDICTED: pentatricopeptide repeat-containing protein At4g25270,
chloroplastic-like [Glycine max]
Length = 526
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 155/327 (47%), Gaps = 61/327 (18%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ Y +G+Y+E + L++ M+++GV D F P+V K C+ + +VG++V+ + I
Sbjct: 161 WNSLISGYAQVGHYDEAIALYFQMVEEGVEADLFTFPRVLKVCAGIGSVQVGEEVHRHAI 220
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F D + N+L+D Y+KC + +
Sbjct: 221 RAGFAA------------------------------DGFILNALVDMYSKCGDIVKARKV 250
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F K+ +D VSWN+ML Y G + N+ +M+ +P+++S+S VL V
Sbjct: 251 FDKMPHRDPVSWNSMLTAYVHHGLEVQAMNIF--RQMLLEGCEPDSVSISTVLTG---VS 305
Query: 213 GVKLGKAIHGYVLR--HHIHLSTACGFVICSCS---------VFNQLSTRDVVVWNSIIS 261
+ LG IHG+V+ H +LS A ++ + VFN + RDVV WNSIIS
Sbjct: 306 SLGLGVQIHGWVISQGHEWNLSIANSLIMMYSNHGRLEKARWVFNLMPERDVVSWNSIIS 365
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----LGTGSFV-- 314
A + + AL + A V+P+ +T VS+L AC L L G L G +
Sbjct: 366 AHCKRRE---ALAFFEQMEGAGVQPDKITFVSILSACAYLGLLKDGERLFALMCGKYKIK 422
Query: 315 -----WNALIDMYGRCGAIQKSRKIFV 336
+ ++++YGR G I+K+ I V
Sbjct: 423 PIMEHYGCMVNLYGRAGLIKKAYSIIV 449
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 134/243 (55%), Gaps = 23/243 (9%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS--WNAMLAGYALGGFREEVTNLLDEMEM 189
+++ L+ YA C YL +H F ++ ++D + WN++++GYA G +E L +M
Sbjct: 127 ISSKLLRLYASCGYLDDAHDLFDQMAKRDTSAFPWNSLISGYAQVGHYDEAIALY--FQM 184
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIH-----------GYVLRHHIHLSTACGFV 238
++ ++ + + VL CA + V++G+ +H G++L + + + CG +
Sbjct: 185 VEEGVEADLFTFPRVLKVCAGIGSVQVGEEVHRHAIRAGFAADGFILNALVDMYSKCGDI 244
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ + VF+++ RD V WNS+++A+V G V A+++ R +++ +P++V+I +VL
Sbjct: 245 VKARKVFDKMPHRDPVSWNSMLTAYVHHGLEVQAMNIFRQMLLEGCEPDSVSISTVLTGV 304
Query: 299 LKLA--------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
L + QG + N+LI MY G ++K+R +F LMP +++VSWN +I
Sbjct: 305 SSLGLGVQIHGWVISQGHEWNLSIANSLIMMYSNHGRLEKARWVFNLMPERDVVSWNSII 364
Query: 351 SVY 353
S +
Sbjct: 365 SAH 367
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 102/241 (42%), Gaps = 59/241 (24%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+++G +VH H I G F+ + L++++ +W SM+
Sbjct: 209 VQVGEEVHRHAIRAGFAADGFILNALVDMYSKCGDIVKARKVFDKMPHRDPVSWNSMLTA 268
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G + +N+F M+ +G PD V S L +G ++ ++IS E N
Sbjct: 269 YVHHGLEVQAMNIFRQMLLEGCEPDSVSISTVLTGVSSLG---LGVQIHGWVISQGHEWN 325
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ L+ ++ GR+E K R++ F+ + ++
Sbjct: 326 LSIANSLIMMYSNHGRLE------------------------KARWV------FNLMPER 355
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSWN++++ + R E ++ME +QP+ I+ +L+ACA + +K G+
Sbjct: 356 DVVSWNSIISAHCK---RREALAFFEQME--GAGVQPDKITFVSILSACAYLGLLKDGER 410
Query: 220 I 220
+
Sbjct: 411 L 411
>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 96/395 (24%), Positives = 168/395 (42%), Gaps = 79/395 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G +HA + G E+ FLG L++++ W++M+ +
Sbjct: 70 GKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQ 129
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G+ +E LF+LM KG RP+ F + + + D R G+ ++ + FE
Sbjct: 130 QGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFE----- 184
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
D LV+N LI Y K R ++ + F + DLV
Sbjct: 185 -------------------------SDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLV 219
Query: 163 SWNAMLAGYALGGFREEVTNLLDEM--EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
SWNA+L+G+ + + + +M+ +PN + VL +C+ + + GK +
Sbjct: 220 SWNALLSGF----YDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQV 275
Query: 221 HGYVLRHHIHLSTACG------FVICSC-----SVFNQLSTRDVVVWNSIISAFVRSGQV 269
H +++++ G + C F++L RD+ W IIS + ++ Q
Sbjct: 276 HAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQA 335
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNAL 318
A+ R + +KPN T+ S L C +A L G + FV +AL
Sbjct: 336 EKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSAL 395
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+D+YG+CG ++ + IF + +++VSWN +IS Y
Sbjct: 396 VDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGY 430
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/364 (22%), Positives = 159/364 (43%), Gaps = 73/364 (20%)
Query: 19 CAFLGSQLLEVFCN-----WTSMMGMYNVLGYYEEIV-----NLFYLMIDKGVRPDHFVC 68
C G+++ E N W +++ G+Y+ +FY M+ +G +P+ F
Sbjct: 202 CVEDGNKVFEAMTNPDLVSWNALLS-----GFYDSQTCGRGPRIFYQMLLEGFKPNMFTF 256
Query: 69 PKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ 128
V ++CS L D GK V+ ++I D
Sbjct: 257 ISVLRSCSSLLDPEFGKQVHAHIIK------------------------------NSSDD 286
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D V +L+D YAK R L+ + F ++ +D+ SW +++GYA E+ +M+
Sbjct: 287 DDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQ 346
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGF 237
+ ++PN +L+ L+ C+ + ++ G+ +H ++ + L CG
Sbjct: 347 --REGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGC 404
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ + ++F L +RD+V WN+IIS + + GQ AL+ R ++ + P+ T + VL A
Sbjct: 405 MEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSA 464
Query: 298 CLKLAALPQG----------LGTGSFV--WNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
C + + +G G + + ++D+ GR G K ++ + + NL
Sbjct: 465 CSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAG---KFNEVKIFIEEMNLTP 521
Query: 346 WNVM 349
++++
Sbjct: 522 YSLI 525
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/347 (22%), Positives = 148/347 (42%), Gaps = 58/347 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ Y LG ++++ LF M + + F V K C+ R GK ++
Sbjct: 18 SWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTGSLREGKVLHALA 77
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ E +D F+ C SL+D Y+KC + +
Sbjct: 78 LRSGCE---------IDEFLGC---------------------SLVDMYSKCGTVYDALK 107
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+KI+ D+V+W+AM+ G G +E L M + +PN +LS +++ +
Sbjct: 108 VFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMR--RKGARPNQFTLSSLVSTATNM 165
Query: 212 KGVKLGKAIHGYVLRHH-------------IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
++ G++IHG + ++ +++ + C V VF ++ D+V WN+
Sbjct: 166 GDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRC--VEDGNKVFEAMTNPDLVSWNA 223
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL-----------AALPQG 307
++S F S + +++ KPN T +SVL +C L +
Sbjct: 224 LLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNS 283
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
FV AL+DMY + ++ + F + ++++ SW V+IS Y
Sbjct: 284 SDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYA 330
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 105/223 (47%), Gaps = 24/223 (10%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + +K+ VSWNA+L GYA G ++V L +M+ +T + +LS VL CA
Sbjct: 8 FFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKF--SKFTLSTVLKGCANTG 65
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ GK +H LR + + + CG V + VF ++ DVV W+++I+
Sbjct: 66 SLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMIT 125
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGT 310
+ G +A +L + +PN T+ S++ + L G +
Sbjct: 126 GLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFES 185
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ V N LI MY + ++ K+F M + +LVSWN ++S +
Sbjct: 186 DNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGF 228
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 97/238 (40%), Gaps = 53/238 (22%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
E G QVHAH+I + F+G+ L++++ +WT ++ Y
Sbjct: 270 EFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGY 329
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
E+ V F M +G++P+ + CS + G+ ++ + G+
Sbjct: 330 AQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDI 389
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
V L+DL+ KCG ME +F+ LI +D
Sbjct: 390 FVGSALVDLYGKCGCMEHAEAIFK----------GLI--------------------SRD 419
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+VSWN +++GY+ G E+ M+ + P+ + GVL+AC+ + V+ GK
Sbjct: 420 IVSWNTIISGYSQHGQGEKALEAF--RMMLSEGIMPDEATFIGVLSACSFMGLVEEGK 475
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 11/119 (9%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
+F + ++ V WN++++ + + G L L + K + T+ +VL C +
Sbjct: 7 LFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTGS 66
Query: 304 LPQG-------LGTG----SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
L +G L +G F+ +L+DMY +CG + + K+F + + ++V+W+ MI+
Sbjct: 67 LREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMIT 125
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 30/153 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
+E G Q+HA + G F+GS L++++ +W +++
Sbjct: 370 LENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISG 429
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD-----YMISI 94
Y+ G E+ + F +M+ +G+ PD V ACS + GK +D Y I+
Sbjct: 430 YSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINP 489
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD 127
E AC ++D+ + G+ EEM+
Sbjct: 490 SIEHYAC----MVDILGRAGKFNEVKIFIEEMN 518
>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1183
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 102/396 (25%), Positives = 184/396 (46%), Gaps = 75/396 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+E G +VH+ +I G+ + LG++L+ ++ N W +M
Sbjct: 385 LEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSE 444
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y +G + E V+LF M GV + + V K + L + K V+ Y++ + F N
Sbjct: 445 YAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSN 504
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V NSLI Y K ++ +H F ++ +
Sbjct: 505 TAVV------------------------------NSLIAAYFKFGGVESAHNLFDELSEP 534
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSWN+M+ G + GF + ++M+ ++ + +L VL A A + + LG+A
Sbjct: 535 DVVSWNSMINGCVVNGFSGNGLEIF--IQMLILGVEVDLTTLVSVLVAWANIGNLSLGRA 592
Query: 220 IHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+HG+ ++ + + + CG + + VF ++ +V W S I+A+VR G
Sbjct: 593 LHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGL 652
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNA 317
DA+ L ++ V+P+ T+ S++ AC ++L +G +G+ V NA
Sbjct: 653 YSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNA 712
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
LI+MY +CG+++++R +F +P K++VSWN MI Y
Sbjct: 713 LINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGY 748
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 92/344 (26%), Positives = 158/344 (45%), Gaps = 57/344 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTS + Y G Y + + LF M KGVRPD + + AC+ G+DV+ Y+
Sbjct: 639 SWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYV 698
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I K G M + V N+LI+ YAKC ++ +
Sbjct: 699 I-------------------KNG-----------MGSNLPVTNALINMYAKCGSVEEARL 728
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FSKI KD+VSWN M+ GY+ E L +M Q +P+ I+++ VL ACA +
Sbjct: 729 VFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDM---QKQFKPDDITMACVLPACAGL 785
Query: 212 KGVKLGKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ G+ IHG++LR +H++ A CG ++ + +F+ + +D++ W +I
Sbjct: 786 AALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMI 845
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA--- 317
+ + G +A+ ++ +A ++P+ + +L AC L +G + + N
Sbjct: 846 AGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGV 905
Query: 318 ---------LIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMIS 351
++D+ R G + K+ K MP K + W V++S
Sbjct: 906 EPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLS 949
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 136/249 (54%), Gaps = 25/249 (10%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
++ + +N+L+D Y+KC L + F K+ +VSW + +A Y G + L DEM
Sbjct: 604 EEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEM 663
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACG 236
+ ++P+ +++ ++ ACA + G+ +H YV+++ I++ CG
Sbjct: 664 Q--SKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCG 721
Query: 237 FVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296
V + VF+++ +D+V WN++I + ++ +AL+L D + KP+ +T+ VLP
Sbjct: 722 SVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLD-MQKQFKPDDITMACVLP 780
Query: 297 ACLKLAALPQG-------LGTGSF----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
AC LAAL +G L G F V AL+DMY +CG + ++ +F ++P K+L+S
Sbjct: 781 ACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLIS 840
Query: 346 WNVMISVYG 354
W VMI+ YG
Sbjct: 841 WTVMIAGYG 849
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 79/174 (45%), Gaps = 22/174 (12%)
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQL 248
S VL CA+ K ++ GK +H ++ + I + A CG ++ +F+++
Sbjct: 371 SYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKI 430
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-- 306
V +WN ++S + + G +++ L + + V N T VL L + +
Sbjct: 431 MNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECK 490
Query: 307 ---------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
G G+ + V N+LI Y + G ++ + +F + ++VSWN MI+
Sbjct: 491 RVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMIN 544
>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
Length = 779
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 94/395 (23%), Positives = 181/395 (45%), Gaps = 72/395 (18%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G +HAH G+ F+ + L++++ W +M+ Y
Sbjct: 118 GRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYAN 177
Query: 43 LG-YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G Y+ I +L + G+RP+ + ++ G V+ Y +
Sbjct: 178 HGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCL--------- 228
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
R LD + ++ L+ +L+D YAKC++L + F + ++
Sbjct: 229 --RAYLD----------------QNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNE 270
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
V+W+A++ G+ L E NL +M +++ + S++ L CA + +++G +H
Sbjct: 271 VTWSALIGGFVLCDRMTEAFNLFKDM-LVEGMCFLSATSVASALRVCASLADLRMGTQLH 329
Query: 222 GYVLRHHIHLSTACGFVICS-----------CSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
+ + IH G + S +F++++ +D + + +++S +V++G+
Sbjct: 330 ALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAE 389
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNALI 319
+A + + + NV+P+ T+VS++PAC LAAL +GL + + N+LI
Sbjct: 390 EAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLI 449
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
DMY +CG I SR++F MP +++VSWN MI+ YG
Sbjct: 450 DMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYG 484
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 84/348 (24%), Positives = 163/348 (46%), Gaps = 59/348 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
+ +++ Y+ G + ++L+ M+ V P+ + P V KACS L D G+ ++ +
Sbjct: 67 YNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKACSALADLCAGRTIHAHAA 126
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
++ + V L+DL+I+C R + +
Sbjct: 127 AVGLHTDLFVSTALIDLYIRCARFGPAANV------------------------------ 156
Query: 153 FSKIKQKDLVSWNAMLAGYALGG-FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+K+ +D+V+WNAMLAGYA G + + +LLD + + ++PN +L +L AQ
Sbjct: 157 FAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQD--RGGLRPNASTLVSLLPLLAQH 214
Query: 212 KGVKLGKAIHGYVLRHHIH-------LSTA-------CGFVICSCSVFNQLSTRDVVVWN 257
+ G ++H Y LR ++ + TA C ++ +C VF+ ++ R+ V W+
Sbjct: 215 GALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWS 274
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANV-KPNTVTIVSVLPACLKLAALPQGLGTGSFV-- 314
++I FV ++ +A +L +D++V + + ++ S L C LA L G + +
Sbjct: 275 ALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAK 334
Query: 315 ---------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
N+L+ MY + G I ++ +F + K+ +S+ ++S Y
Sbjct: 335 SGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGY 382
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 76/346 (21%), Positives = 145/346 (41%), Gaps = 57/346 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGV-RPDHFVCPKVYKACSELKDYRVGKDVYDY 90
W++++G + + E NLF M+ +G+ + C+ L D R+G ++
Sbjct: 272 TWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHA- 330
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
L K G + D NSL+ YAK + +
Sbjct: 331 ------------------LLAKSG-----------IHADLTAGNSLLSMYAKAGLINEAT 361
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F +I KD +S+ A+L+GY G EE + +M+ ++QP+ ++ ++ AC+
Sbjct: 362 MLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQ--ACNVQPDIATMVSLIPACSH 419
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ ++ G+ HG V+ + L T+ CG + S VF+++ RD+V WN++
Sbjct: 420 LAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTM 479
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---LGTGSFVWN 316
I+ + G +A L + +P+ VT + ++ AC + +G T + +
Sbjct: 480 IAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYG 539
Query: 317 AL---------IDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMISV 352
L +D+ R G + ++ + MP K V W ++
Sbjct: 540 ILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGA 585
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 105/227 (46%), Gaps = 28/227 (12%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F +I D ++NA++ Y+ G +L M + + PN + VL AC+ +
Sbjct: 56 FDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFR--VPPNKYTFPFVLKACSALA 113
Query: 213 GVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ G+ IH + L + +STA C + +VF ++ RDVV WN++++
Sbjct: 114 DLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLA 173
Query: 262 AFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------- 313
+ G A+ L D+ ++PN T+VS+LP + AL QG ++
Sbjct: 174 GYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLD 233
Query: 314 -------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ AL+DMY +C + + ++F M +N V+W+ +I +
Sbjct: 234 QNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGF 280
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 68/141 (48%), Gaps = 15/141 (10%)
Query: 225 LRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV 284
L HI A G + + VF+++ D +N++I A+ G A+DL R ++ V
Sbjct: 40 LEQHI----ARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRV 95
Query: 285 KPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRK 333
PN T VL AC LA A GL T FV ALID+Y RC +
Sbjct: 96 PPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAAN 155
Query: 334 IFVLMPHKNLVSWNVMISVYG 354
+F MP +++V+WN M++ Y
Sbjct: 156 VFAKMPMRDVVAWNAMLAGYA 176
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 117/298 (39%), Gaps = 70/298 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ +G Q+HA L G+ G+ LL ++ ++ +++
Sbjct: 322 LRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSG 381
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI--SIKFE 97
Y G EE +F M V+PD + ACS L + G+ + +I + E
Sbjct: 382 YVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALE 441
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
+ C NSLID YAKC + +S F K+
Sbjct: 442 TSIC--------------------------------NSLIDMYAKCGRIDLSRQVFDKMP 469
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+D+VSWN M+AGY + G +E T L + M +P+ ++ ++AAC+ V G
Sbjct: 470 ARDIVSWNTMIAGYGIHGLGKEATTLF--LSMKNQGFEPDDVTFICLIAACSHSGLVTEG 527
Query: 218 K-----AIHGY----VLRHHI---HLSTACGFVICSCSVFNQLSTR-DVVVWNSIISA 262
K H Y + H+I L GF+ + + + DV VW +++ A
Sbjct: 528 KHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGA 585
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 170/347 (48%), Gaps = 30/347 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKG--VRPDHFVCPKVYKACSELKDYRVGKDVYD 89
W ++ YN YEE LF M K V P+ + ACS+LKD GK +Y+
Sbjct: 204 TWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYN 263
Query: 90 -YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLK 147
Y+ E N ++ L+D+F CG M+ G+F+EM +D + S++ +A +
Sbjct: 264 KYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRID 323
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
++ F ++ ++D VSW AM+ GY +EV L +M+M ++++P+ ++ +L A
Sbjct: 324 LARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQM--SNVKPDEFTMVSILTA 381
Query: 208 CAQVKGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVW 256
CA + ++LG+ Y+ ++ I T CG V + +FN++ +D W
Sbjct: 382 CAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTW 441
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA------------AL 304
++I +G +AL + ++ A+V P+ +T + V+ AC + A+
Sbjct: 442 TAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAV 501
Query: 305 PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMI 350
G+ + ++D+ GR G ++++ ++ + MP K N + W ++
Sbjct: 502 QHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLL 548
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/373 (26%), Positives = 168/373 (45%), Gaps = 85/373 (22%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y+ + E V+L+ LM+ ++PD F P + K ++ + GK + ++ +
Sbjct: 103 WNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLLNHAV 162
Query: 93 SIKF-EGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F + N V++ + LF CG + +F+ D
Sbjct: 163 IHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDG----------------------- 199
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
++V+WN +L+GY EE L EME + PN+++L +L+AC+++
Sbjct: 200 -------WEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKL 252
Query: 212 KGVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
K + GK I+ ++ I + +CG + + VF+++ TRDV+ W SI
Sbjct: 253 KDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSI 312
Query: 260 ISAF-------------------------------VRSGQVVDALDLLRDVIVANVKPNT 288
++ F +R + + L L RD+ ++NVKP+
Sbjct: 313 VTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDE 372
Query: 289 VTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVL 337
T+VS+L AC L AL G + +F+ NALIDMY +CG ++K++KIF
Sbjct: 373 FTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNE 432
Query: 338 MPHKNLVSWNVMI 350
M K+ +W MI
Sbjct: 433 MQKKDKFTWTAMI 445
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 121/288 (42%), Gaps = 57/288 (19%)
Query: 13 VCGVELCAFLGSQLLEV-FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKV 71
C ++L Q+ E + +WT+M+ Y + ++E++ LF M V+PD F +
Sbjct: 319 TCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSI 378
Query: 72 YKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFL 131
AC+ L +G+ Y+ K + + + L+D++ KCG +E +F EM
Sbjct: 379 LTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEM----- 433
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
++KD +W AM+ G A G EE + M++
Sbjct: 434 -------------------------QKKDKFTWTAMIVGLANNGHGEEALTMFS--YMLE 466
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKA-IHGYVLRHHIHLSTACGFVICSCSVFNQLST 250
+ P+ I+ GV+ AC V V GK ++H I
Sbjct: 467 ASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGI--------------------K 506
Query: 251 RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
++ + ++ R+G + +AL+++ ++ VKPN++ S+L AC
Sbjct: 507 PNLTHYGCMVDLLGRAGHLKEALEVIMNM---PVKPNSIVWGSLLGAC 551
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 28/228 (12%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F +I Q + WN M+ GY+ E +L M + +++P+ + +L +
Sbjct: 92 FDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLM--LVHNIKPDGFTFPFLLKGFTKDM 149
Query: 213 GVKLGKA------IHGY------VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+K GK IHG+ V + IHL + CG V + +F+ +VV WN ++
Sbjct: 150 ALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVL 209
Query: 261 SAFVRSGQVVDALDLLRDV--IVANVKPNTVTIVSVLPACLKLAALPQG----------- 307
S + R + ++ L ++ V PN+VT+V +L AC KL L G
Sbjct: 210 SGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEG 269
Query: 308 -LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + NALIDM+ CG + +R +F M ++++SW +++ +
Sbjct: 270 IVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFA 317
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 12/135 (8%)
Query: 232 STACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI 291
+ G V + VF+++ V +WN++I + R + L + ++V N+KP+ T
Sbjct: 79 TKESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTF 138
Query: 292 VSVLPACLKLAALPQG------------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+L K AL G L + FV I ++ CG + +RKIF +
Sbjct: 139 PFLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGD 198
Query: 340 HKNLVSWNVMISVYG 354
+V+WNV++S Y
Sbjct: 199 GWEVVTWNVVLSGYN 213
>gi|255641788|gb|ACU21163.1| unknown [Glycine max]
Length = 481
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 155/327 (47%), Gaps = 61/327 (18%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ Y +G+Y+E + L++ M+++GV D F P+V K C+ + +VG++V+ + I
Sbjct: 161 WNSLISGYAQVGHYDEAIALYFQMVEEGVEADLFTFPRVLKVCAGIGSVQVGEEVHRHAI 220
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F D + N+L+D Y+KC + +
Sbjct: 221 RAGFAA------------------------------DGFILNALVDMYSKCGDIVKARKV 250
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F K+ +D VSWN+ML Y G + N+ +M+ +P+++S+S VL V
Sbjct: 251 FDKMPHRDPVSWNSMLTAYVHHGLEVQAMNIF--RQMLLEGCEPDSVSISTVLTG---VS 305
Query: 213 GVKLGKAIHGYVLR--HHIHLSTACGFVICSCS---------VFNQLSTRDVVVWNSIIS 261
+ LG IHG+V+ H +LS A ++ + VFN + RDVV WNSIIS
Sbjct: 306 SLGLGVQIHGWVISQGHEWNLSIANSLIMMYSNHGRLEKARWVFNLMPERDVVSWNSIIS 365
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----LGTGSFV-- 314
A + + AL + A V+P+ +T VS+L AC L L G L G +
Sbjct: 366 AHCKRRE---ALAFFEQMEGAGVQPDKITFVSILSACAYLGLLKDGERLFALMCGKYKIK 422
Query: 315 -----WNALIDMYGRCGAIQKSRKIFV 336
+ ++++YGR G I+K+ I V
Sbjct: 423 PIMEHYGCMVNLYGRAGLIKKAYSIIV 449
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 134/243 (55%), Gaps = 23/243 (9%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS--WNAMLAGYALGGFREEVTNLLDEMEM 189
+++ L+ YA C YL +H F ++ ++D + WN++++GYA G +E L +M
Sbjct: 127 ISSKLLRLYASCGYLDDAHDLFDQMAKRDTSAFPWNSLISGYAQVGHYDEAIALY--FQM 184
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIH-----------GYVLRHHIHLSTACGFV 238
++ ++ + + VL CA + V++G+ +H G++L + + + CG +
Sbjct: 185 VEEGVEADLFTFPRVLKVCAGIGSVQVGEEVHRHAIRAGFAADGFILNALVDMYSKCGDI 244
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ + VF+++ RD V WNS+++A+V G V A+++ R +++ +P++V+I +VL
Sbjct: 245 VKARKVFDKMPHRDPVSWNSMLTAYVHHGLEVQAMNIFRQMLLEGCEPDSVSISTVLTGV 304
Query: 299 LKLA--------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
L + QG + N+LI MY G ++K+R +F LMP +++VSWN +I
Sbjct: 305 SSLGLGVQIHGWVISQGHEWNLSIANSLIMMYSNHGRLEKARWVFNLMPERDVVSWNSII 364
Query: 351 SVY 353
S +
Sbjct: 365 SAH 367
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 102/241 (42%), Gaps = 59/241 (24%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+++G +VH H I G F+ + L++++ +W SM+
Sbjct: 209 VQVGEEVHRHAIRAGFAADGFILNALVDMYSKCGDIVKARKVFDKMPHRDPVSWNSMLTA 268
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G + +N+F M+ +G PD V S L +G ++ ++IS E N
Sbjct: 269 YVHHGLEVQAMNIFRQMLLEGCEPDSVSISTVLTGVSSLG---LGVQIHGWVISQGHEWN 325
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ L+ ++ GR+E K R++ F+ + ++
Sbjct: 326 LSIANSLIMMYSNHGRLE------------------------KARWV------FNLMPER 355
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSWN++++ + R E ++ME +QP+ I+ +L+ACA + +K G+
Sbjct: 356 DVVSWNSIISAHCK---RREALAFFEQME--GAGVQPDKITFVSILSACAYLGLLKDGER 410
Query: 220 I 220
+
Sbjct: 411 L 411
>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
Length = 679
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 102/376 (27%), Positives = 162/376 (43%), Gaps = 79/376 (21%)
Query: 56 MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIK--- 112
M+ G PDH V P V K+C+ +KD R G+ V+ +I + + L++++ K
Sbjct: 1 MLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWS 60
Query: 113 ----------------------------------CGRMEITSGLFEEMDQDFLVN----- 133
C E +G+ + D + + N
Sbjct: 61 LEEGGVQRFCDSKMLGGIPEPREIGKCSNSHDLPCELDERVAGIDQNGDLNQMSNILYQV 120
Query: 134 ---------NSLIDFYAKCR----YLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEV 180
D Y+K YL F + ++D+VSWN +++G A G E+
Sbjct: 121 NTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDA 180
Query: 181 TNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------I 229
++ EM D++P++ +LS VL A+ + GK IHGY +R+ I
Sbjct: 181 LMMVREMG--NADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLI 238
Query: 230 HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289
+ C V SC VF L D + WNSII+ V++G + L + +++A +KPN V
Sbjct: 239 DMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHV 298
Query: 290 TIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLM 338
+ S++PAC L L G F+ +AL+DMY +CG I+ +R IF M
Sbjct: 299 SFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKM 358
Query: 339 PHKNLVSWNVMISVYG 354
++VSW MI Y
Sbjct: 359 ELYDMVSWTAMIMGYA 374
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/323 (23%), Positives = 141/323 (43%), Gaps = 55/323 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ G +E+ + + M + +RPD F V +E + GK+++ Y
Sbjct: 163 SWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYA 222
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + D D + +SLID YAKC + S
Sbjct: 223 IRNGY------------------------------DADVFIGSSLIDMYAKCTRVDDSCR 252
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + Q D +SWN+++AG G +E +M+ ++PN +S S ++ ACA +
Sbjct: 253 VFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFF--QQMLIAKIKPNHVSFSSIMPACAHL 310
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ LGK +HGY++R + + CG + + +F+++ D+V W ++I
Sbjct: 311 TTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMI 370
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------L 308
+ G DA+ L + + V VKPN V ++VL AC + + +
Sbjct: 371 MGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRI 430
Query: 309 GTGSFVWNALIDMYGRCGAIQKS 331
G + A+ D+ GR G ++++
Sbjct: 431 IPGLEHYAAVADLLGRVGRLEEA 453
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/380 (20%), Positives = 154/380 (40%), Gaps = 103/380 (27%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G ++H + I G + F+GS L++++ +W S++
Sbjct: 215 GKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQ 274
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G ++E + F M+ ++P+H + AC+ L +GK ++ Y+I +F+GN
Sbjct: 275 NGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNV-- 332
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+ ++L+D YAKC ++ + F K++ D+V
Sbjct: 333 ----------------------------FIASALVDMYAKCGNIRTARWIFDKMELYDMV 364
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW AM+ GYAL G + +L ME+ ++PN ++ VL AC+
Sbjct: 365 SWTAMIMGYALHGHAYDAISLFKRMEV--EGVKPNYVAFMAVLTACSH------------ 410
Query: 223 YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVV-----WNSIISAFVRSGQVVDALDLLR 277
G V + FN ++ ++ + ++ R G++ +A + +
Sbjct: 411 ------------AGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFIS 458
Query: 278 DVIVANVKPNTVTIVSVLPAC-----LKLAAL---------PQGLGTGSFVWNALIDMYG 323
D+ +++P ++L AC ++LA PQ +G + L ++Y
Sbjct: 459 DM---HIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGA----YVLLSNIYS 511
Query: 324 RCGAIQKSRKIFVLMPHKNL 343
G + +RK+ + M K +
Sbjct: 512 AAGRWKDARKLRIAMRDKGM 531
>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
Length = 1161
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 96/353 (27%), Positives = 156/353 (44%), Gaps = 59/353 (16%)
Query: 25 QLLEVFCN-----WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK 79
Q LE F + + +++ G+YEE +Y M GV + V ACS K
Sbjct: 340 QALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSK 399
Query: 80 DYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDF 139
G+ ++ ++ + D + NSLI
Sbjct: 400 ALGAGELIHSHISEVGH------------------------------SSDVQIGNSLISM 429
Query: 140 YAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI 199
YA+C L + F+ + ++DL+SWNA++AGYA R E L +M+ ++P +
Sbjct: 430 YARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQ--SEGVKPGRV 487
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYVLRHHI----HLSTA-------CGFVICSCSVFNQL 248
+ +L+AC GK IH +LR I HL+ A CG ++ + +VF
Sbjct: 488 TFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGT 547
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL---- 304
RD++ WNS+I+ + G A L ++ ++P+ +T SVL C AL
Sbjct: 548 RARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGR 607
Query: 305 -------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
GL + NALI+MY RCG++Q + ++F + H+N++SW MI
Sbjct: 608 QIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMI 660
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 101/392 (25%), Positives = 162/392 (41%), Gaps = 75/392 (19%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNVLG 44
++HA ++ GV FL + L+ ++ +W S++ Y G
Sbjct: 103 RIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQG 162
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
+ ++ LF M G P + AC + GK ++ +I ++
Sbjct: 163 FKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQ------- 215
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
+D V NSL++ Y KC L + FS I ++D+VS+
Sbjct: 216 -----------------------RDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSY 252
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
N ML YA + EE L +M + P+ ++ +L A + GK IH
Sbjct: 253 NTMLGLYAQKAYVEECIGLFGQMS--SEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLA 310
Query: 225 ----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
L I + TA CG V + + RDVVV+N++I+A + G +A
Sbjct: 311 VNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAF 370
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LGTGSFVW--NALIDMY 322
+ + V N T +SVL AC AL G +G S V N+LI MY
Sbjct: 371 EQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMY 430
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
RCG + ++R++F MP ++L+SWN +I+ Y
Sbjct: 431 ARCGDLPRARELFNTMPKRDLISWNAIIAGYA 462
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/356 (24%), Positives = 157/356 (44%), Gaps = 55/356 (15%)
Query: 21 FLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD 80
F G++ ++ +W SM+ + G YE LF M +G+ PD V C +
Sbjct: 544 FEGTRARDII-SWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEA 602
Query: 81 YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFY 140
+G+ ++ + I I SGL D + N+LI+ Y
Sbjct: 603 LELGRQIH--------------------MLI------IESGL----QLDVNLGNALINMY 632
Query: 141 AKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTIS 200
+C L+ ++ F ++ ++++SW AM+ G+A G + L +M+ +P +
Sbjct: 633 IRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQ--NDGFKPVKST 690
Query: 201 LSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSC-----------SVFNQLS 249
S +L AC + GK + ++L L T G + S VF+++
Sbjct: 691 FSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMP 750
Query: 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-- 307
RD++ WN +I+ + ++G AL + V N + VS+L AC +AL +G
Sbjct: 751 NRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKR 810
Query: 308 ---------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ V ALI MY +CG++++++++F KN+V+WN MI+ Y
Sbjct: 811 VHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYA 866
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 92/383 (24%), Positives = 155/383 (40%), Gaps = 76/383 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLL-------------EVF--------CNWTSMMGM 39
+ELG Q+H +I G++L LG+ L+ EVF +WT+M+G
Sbjct: 603 LELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGG 662
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ G + LF+ M + G +P + KAC GK V ++++ +E
Sbjct: 663 FADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYE-- 720
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D V N+LI Y+K + + F K+ +
Sbjct: 721 ----------------------------LDTGVGNALISAYSKSGSMTDARKVFDKMPNR 752
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D++SWN M+AGYA G T L +M + + N S +L AC+ ++ GK
Sbjct: 753 DIMSWNKMIAGYAQNGL--GGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKR 810
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H +++ I + CG + + VF+ + ++VV WN++I+A+ + G
Sbjct: 811 VHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGL 870
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPAC------------LKLAALPQGLGTGSFVWN 316
ALD + +KP+ T S+L AC GL +
Sbjct: 871 ASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYG 930
Query: 317 ALIDMYGRCGAIQKSRKIFVLMP 339
L+ + GR G Q++ + MP
Sbjct: 931 CLVGLLGRAGRFQEAETLINQMP 953
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 154/353 (43%), Gaps = 53/353 (15%)
Query: 53 FYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIK 112
FY + RP+ F P ++KACS + + G+ ++ +++ + +K + ++
Sbjct: 120 FYGRMVIDARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYAS 179
Query: 113 CGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYA 172
GR+E +F + D + N++ID Y KC L+ + F+++ K++ SWN M+ G A
Sbjct: 180 FGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLA 239
Query: 173 LGGFREEVTNLLDEM-----------------------------EMIQTDMQPNTISLSG 203
GG + L DEM +M + + +P LS
Sbjct: 240 KGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSS 299
Query: 204 VLAACAQVKGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRD 252
VLAAC+ + + G+ +H Y+ R+ I L CG + VF ++ R+
Sbjct: 300 VLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKERE 359
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS 312
+ WN++I G+ DAL+L + +KPN +T+V VL AC + +GL
Sbjct: 360 IFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQ 419
Query: 313 FV------------WNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
+ + ++D+ GR G ++ + MP K N W ++
Sbjct: 420 TMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGA 472
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 137/331 (41%), Gaps = 82/331 (24%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W+SM+ Y G Y+E + +F M + RP F+ V ACS + G+ V+ Y+
Sbjct: 261 SWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYL 320
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ +A + LLD++ KCGR+++ +FEEM
Sbjct: 321 KRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEM------------------------- 355
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
K++++ +WNAM+ G A+ G E+ L +++ + M+PN I+L GVL ACA
Sbjct: 356 -----KEREIFTWNAMIGGLAIHGRAEDALELFSKLQ--EGRMKPNGITLVGVLTACAH- 407
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLST-----RDVVVWNSIISAFVRS 266
GFV +F + ++ + ++ RS
Sbjct: 408 -----------------------AGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRS 444
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPAC--------------LKLAALPQGLGTGS 312
G +A DL+ + +KPN ++L AC + L PQ +G
Sbjct: 445 GLFSEAEDLINSM---PMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQ--NSGR 499
Query: 313 FVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
+V L ++Y + G KI LM ++ +
Sbjct: 500 YV--LLSNIYAKVGRFDDVSKIRKLMKNRGI 528
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 102/245 (41%), Gaps = 57/245 (23%)
Query: 128 QDFLVNNSLIDFYAKCRY------LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVT 181
QD V+ +L+ YA + LKV FS I ++ WN ++ G +
Sbjct: 63 QDHYVSGALLKCYANPHFSNFDFALKV----FSSIPNPNVFIWNIVIKGCLENNKLFKAI 118
Query: 182 NLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI----HLSTACGF 237
M + D +PN + + AC+ + V+ G+ IHG+V++H I H+ +A
Sbjct: 119 YFYGRMVI---DARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAG-- 173
Query: 238 VICSCSVFNQLS---------TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288
I + F +L DVV WN++I +++ G + A L + V N+
Sbjct: 174 -IQMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNI---- 228
Query: 289 VTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
GS WN +I+ + G + +RK+F M ++ +SW+
Sbjct: 229 ----------------------GS--WNVMINGLAKGGNLGDARKLFDEMSERDEISWSS 264
Query: 349 MISVY 353
M+ Y
Sbjct: 265 MVDGY 269
>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
Length = 640
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 96/350 (27%), Positives = 174/350 (49%), Gaps = 34/350 (9%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +MM Y E+ + L+ LM+ V PD++ P V +AC+ GK+++D+++
Sbjct: 97 WNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVL 156
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAK---CRYLKV 148
+ F+ + V+ L++++ CG M LF+E D + NS++ Y K +
Sbjct: 157 KVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVME 216
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
+ F+++ +KD+VSW+A+++GY G EE + +EM M+ + + + VL+AC
Sbjct: 217 AWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMF--IEMNANGMRLDEVVVVSVLSAC 274
Query: 209 AQVKGVKLGKAIHGYVLR----HHIHLSTA-----------CGFVICSCSVFNQLSTRDV 253
A + VK GK IHG V+R +++L A CG V + VFN + + V
Sbjct: 275 AHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGV 334
Query: 254 VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL----- 308
WN++I +G V +LD+ ++ V PN +T + VL AC + + +G
Sbjct: 335 SSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFAS 394
Query: 309 -----GTGSFV--WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
G V + ++D+ GR G + ++ K+ MP ++ +W ++
Sbjct: 395 MIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALL 444
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 87/197 (44%), Gaps = 28/197 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W++++ Y G YEE + +F M G+R D V V AC+ L + GK ++ +
Sbjct: 231 SWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLV 290
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + E ++ L+ ++ D Y KC ++ +
Sbjct: 291 IRMGIESYVNLQNALIHMY--------------------------SDMYMKCGCVENALE 324
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ +++K + SWNA++ G A+ G E ++ EM+ + PN I+ GVL AC +
Sbjct: 325 VFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMK--NNGVIPNEITFMGVLGACRHM 382
Query: 212 KGVKLGKAIHGYVLRHH 228
V G+ ++ H
Sbjct: 383 GLVDEGRCHFASMIEKH 399
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 11/124 (8%)
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-- 298
S +F+++ + +WN+++ A+++S AL L + ++ NV P+ T V+ AC
Sbjct: 82 SLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAV 141
Query: 299 ---------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
+ L G + +V N LI+MY CG ++ +RK+F P + VSWN +
Sbjct: 142 RLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSI 201
Query: 350 ISVY 353
++ Y
Sbjct: 202 LAGY 205
>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 703
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 95/342 (27%), Positives = 150/342 (43%), Gaps = 54/342 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y + E+ + LF M +GV+P+ + KAC+ L + GK+V+
Sbjct: 96 SWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVH--- 152
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
AC++ L+ D V +L+ Y KC + +
Sbjct: 153 --------ACIRHGGLE-------------------SDVRVGTALLRMYGKCGSINEARR 185
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + D++SW M+ YA G +E L+ +ME Q +PN I+ +L ACA
Sbjct: 186 IFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQME--QEGFKPNAITYVSILNACASE 243
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVIC-----------SCSVFNQLSTRDVVVWNSII 260
+K K +H + L + L G + + VF+++ RDVV WN +I
Sbjct: 244 GALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMI 303
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLG 309
AF G+ +A DL + KP+ + +S+L AC AL GL
Sbjct: 304 GAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLE 363
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
V AL+ MY + G+I +R +F M +N+VSWN MIS
Sbjct: 364 VDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMIS 405
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 143/320 (44%), Gaps = 54/320 (16%)
Query: 57 IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM 116
+ +G+ D F+ +V K C + KD K V+D +I + E NA V
Sbjct: 20 LQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVM------------- 66
Query: 117 EITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGF 176
N+L+ Y +C L+ + C F + +K SWNAM+AGY
Sbjct: 67 -----------------NNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKH 109
Query: 177 REEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLS 232
E+ L EM +QPN + +L ACA + +K GK +H + L + +
Sbjct: 110 AEDAMRLF--REMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVG 167
Query: 233 TA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK 285
TA CG + + +F+ L D++ W +I A+ +SG +A L+ + K
Sbjct: 168 TALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFK 227
Query: 286 PNTVTIVSVLPAC-----------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKI 334
PN +T VS+L AC + AL GL V AL+ MY + G+I +R +
Sbjct: 228 PNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVV 287
Query: 335 FVLMPHKNLVSWNVMISVYG 354
F M +++VSWNVMI +
Sbjct: 288 FDRMKVRDVVSWNVMIGAFA 307
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 93/380 (24%), Positives = 158/380 (41%), Gaps = 77/380 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
++ G +VHA + G+E +G+ LL ++ +WT M+G
Sbjct: 145 LKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGA 204
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G +E L M +G +P+ + N
Sbjct: 205 YAQSGNGKEAYRLMLQMEQEGFKPNAITYVSIL--------------------------N 238
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
AC L + R + +GL + D V +L+ YAK + + F ++K +
Sbjct: 239 ACASEGALKWVKRVHRHALDAGL----ELDVRVGTALVQMYAKSGSIDDARVVFDRMKVR 294
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSWN M+ +A G E +L ++M +P+ I +L ACA ++ K
Sbjct: 295 DVVSWNVMIGAFAEHGRGHEAYDLF--LQMQTEGCKPDAIMFLSILNACASAGALEWVKK 352
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH + L +H+ + G + + VF+++ R+VV WN++IS + G
Sbjct: 353 IHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGL 412
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA----------ALPQGLGTGSFVW--N 316
DAL++ R + VKP+ VT V+VL AC A+ Q G V N
Sbjct: 413 GQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCN 472
Query: 317 ALIDMYGRCGAIQKSRKIFV 336
++D+ GR G + ++ K+F+
Sbjct: 473 CMVDLLGRAGRLMEA-KLFI 491
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 96/203 (47%), Gaps = 27/203 (13%)
Query: 179 EVTNLLDE-----MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH-----------G 222
+ N L E M +Q + ++ VL C + K + K +H
Sbjct: 4 QTANTLSEAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNA 63
Query: 223 YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
+V+ + +H+ CG + + VF+ L + WN++I+ +V DA+ L R++
Sbjct: 64 HVMNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHE 123
Query: 283 NVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKS 331
V+PN T + +L AC L+AL GL + V AL+ MYG+CG+I ++
Sbjct: 124 GVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEA 183
Query: 332 RKIFVLMPHKNLVSWNVMISVYG 354
R+IF + + +++SW VMI Y
Sbjct: 184 RRIFDNLMNHDIISWTVMIGAYA 206
>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
[Vitis vinifera]
Length = 836
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 82/342 (23%), Positives = 169/342 (49%), Gaps = 54/342 (15%)
Query: 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS 93
S++ Y+ G E + L+ M+ GV P+H+ P V C+++ + G V+ ++
Sbjct: 100 NSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVK 159
Query: 94 IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKF 153
+ E +D + N LI FYA+C ++ H F
Sbjct: 160 MGLE------------------------------EDVFIQNCLIHFYAECGHMDHGHKVF 189
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG 213
+ ++++VSW +++ GYA G +E +L EM++ ++P+++++ V++ACA+++
Sbjct: 190 EGMSERNVVSWTSLICGYARGDRPKEAVSLF--FEMVEAGIRPSSVTMVCVISACAKLRD 247
Query: 214 VKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISA 262
+ +G+ + Y+ + L+ CG + + +F++ R++V++N+I+S
Sbjct: 248 LDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSN 307
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTG 311
+ R G +AL +L +++ +P+ VT++S + A +L L GL
Sbjct: 308 YARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGW 367
Query: 312 SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ N +IDMY +CG + + ++F LM +K +VSWN + + +
Sbjct: 368 DSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGF 409
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 104/424 (24%), Positives = 185/424 (43%), Gaps = 108/424 (25%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
GIQVH ++ G+E F+ + L+ + +WTS++ Y
Sbjct: 150 GIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYAR 209
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+E V+LF+ M++ G+RP V AC++L+D +G+ V Y+ + + N +
Sbjct: 210 GDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVM 269
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L+D+++KCG ++ LF+E +D ++LV
Sbjct: 270 VNALVDMYMKCGAIDAAKRLFDE----------CVD--------------------RNLV 299
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+N +L+ YA G E +LD EM+Q +P+ +++ ++A AQ+ + GK HG
Sbjct: 300 LYNTILSNYARQGLAREALAILD--EMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHG 357
Query: 223 YVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV-- 269
YV+R+ I + CG +C VF+ +S + VV WNS+ + F+R+G V
Sbjct: 358 YVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVES 417
Query: 270 -----------------------------VDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
DA++L R++ +K + VT++ + AC
Sbjct: 418 AWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGY 477
Query: 301 LAALPQ------------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
L A P+ G+ + AL+DM+ RCG Q + ++F M +++ +W
Sbjct: 478 LGA-PELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTA 536
Query: 349 MISV 352
I
Sbjct: 537 AIGT 540
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 161/344 (46%), Gaps = 26/344 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
+ +++ Y G E + + M+ +G RPD A ++L D GK + Y+I
Sbjct: 301 YNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVI 360
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHC 151
EG + ++D+++KCG+ E+ +F+ M +V+ NSL + + ++ +
Sbjct: 361 RNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWE 420
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F++I +++ V WN M++G E+ L EM+ ++ + +++ G+ +AC +
Sbjct: 421 VFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQ--GEGIKADRVTMMGIASACGYL 478
Query: 212 KGVKLGKAIHGYVLRHHI----HLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+L K +H Y+ ++ I L+TA CG + VFN+++ RDV W + I
Sbjct: 479 GAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAI 538
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
G A L +++ VKP+ V V VL AC + QGL S +
Sbjct: 539 GTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMEDHGIS 598
Query: 315 -----WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ ++D+ GR G ++++ + MP N V W +++
Sbjct: 599 PQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAA 642
>gi|302756099|ref|XP_002961473.1| hypothetical protein SELMODRAFT_77426 [Selaginella moellendorffii]
gi|300170132|gb|EFJ36733.1| hypothetical protein SELMODRAFT_77426 [Selaginella moellendorffii]
Length = 643
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 165/345 (47%), Gaps = 56/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G+ EE V L+ LM +G++PD V ++ G ++D +
Sbjct: 181 SWNAMLAAYAQNGHCEEAVRLYRLMCFEGIKPDATTFVSVLDGWKGEGEH--GTRIHDQV 238
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F N + L+ ++ GR++ RY+
Sbjct: 239 LESGFGSNTTLANALVSMYGSGGRVD------------------------DARYV----- 269
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM-EMIQTDMQPNTISLSGVLAACAQ 210
F I +K +VSWNAML YA G + +L +M EM + ++PN+++ +L ACA
Sbjct: 270 -FDGIAEKTVVSWNAMLTAYAQNGRYGKAVDLFWKMDEMRRALVEPNSVTFVNLLVACAA 328
Query: 211 VKGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
++ G+ IH V I++ + CG ++ + SVF+ + +++V WN +
Sbjct: 329 TGFLEAGRKIHAEVASLGLLSTLSVGGALINMYSECGNLVLAKSVFDSVPHKNLVSWNVL 388
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GL 308
I ++ G +AL + + + + +KP+ T +SVL AC AL + GL
Sbjct: 389 IGSYAGDGDGKEALGVHQKMELEGLKPDKFTFISVLHACSASEALAEGKAIHALIAASGL 448
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLM-PHKNLVSWNVMISV 352
+ ALI++YG+CG+++++R +F+ M +NLV+WN M++
Sbjct: 449 ERDEAIGTALINLYGKCGSLEQARNVFLDMKSRRNLVTWNSMLAA 493
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 100/348 (28%), Positives = 161/348 (46%), Gaps = 61/348 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT M+G Y G+ E + LF + +G+ D+ KAC+ D G+ ++
Sbjct: 80 SWTIMLGAYADNGHGREALGLFREIQSRGMAIDNVTLVSALKACAVAGDLEEGRGIHASA 139
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
S+ +E + +V +L+ Y KC +L+ +
Sbjct: 140 RSLGYE------------------------------SEIIVATALVSMYGKCGHLEEAKA 169
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ + +++ VSWNAMLA YA G EE L M ++P+ + VL
Sbjct: 170 VFATLVERNRVSWNAMLAAYAQNGHCEEAVRLY--RLMCFEGIKPDATTFVSVLDGW--- 224
Query: 212 KGV-KLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSI 259
KG + G IH VL +T + G V + VF+ ++ + VV WN++
Sbjct: 225 KGEGEHGTRIHDQVLESGFGSNTTLANALVSMYGSGGRVDDARYVFDGIAEKTVVSWNAM 284
Query: 260 ISAFVRSGQVVDALDL---LRDVIVANVKPNTVTIVSVLPACLKLAALPQG--------- 307
++A+ ++G+ A+DL + ++ A V+PN+VT V++L AC L G
Sbjct: 285 LTAYAQNGRYGKAVDLFWKMDEMRRALVEPNSVTFVNLLVACAATGFLEAGRKIHAEVAS 344
Query: 308 LGTGSF--VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
LG S V ALI+MY CG + ++ +F +PHKNLVSWNV+I Y
Sbjct: 345 LGLLSTLSVGGALINMYSECGNLVLAKSVFDSVPHKNLVSWNVLIGSY 392
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 121/247 (48%), Gaps = 26/247 (10%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D + N L+ Y KC ++ + F +I+++++ SW ML YA G E L E++
Sbjct: 46 DRYLGNLLVQAYGKCGSVRDAREVFDRIQRRNIFSWTIMLGAYADNGHGREALGLFREIQ 105
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH------GYVLRHHIHLSTA-------C 235
M + ++L L ACA ++ G+ IH GY I ++TA C
Sbjct: 106 --SRGMAIDNVTLVSALKACAVAGDLEEGRGIHASARSLGY--ESEIIVATALVSMYGKC 161
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
G + + +VF L R+ V WN++++A+ ++G +A+ L R + +KP+ T VSVL
Sbjct: 162 GHLEEAKAVFATLVERNRVSWNAMLAAYAQNGHCEEAVRLYRLMCFEGIKPDATTFVSVL 221
Query: 296 PAC---------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
+ L G G+ + + NAL+ MYG G + +R +F + K +VSW
Sbjct: 222 DGWKGEGEHGTRIHDQVLESGFGSNTTLANALVSMYGSGGRVDDARYVFDGIAEKTVVSW 281
Query: 347 NVMISVY 353
N M++ Y
Sbjct: 282 NAMLTAY 288
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 79/349 (22%), Positives = 153/349 (43%), Gaps = 60/349 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKG---VRPDHFVCPKVYKACSELKDYRVGKDVY 88
+W +M+ Y G Y + V+LF+ M + V P+ + AC+ G+ ++
Sbjct: 280 SWNAMLTAYAQNGRYGKAVDLFWKMDEMRRALVEPNSVTFVNLLVACAATGFLEAGRKIH 339
Query: 89 DYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKV 148
+ S+ GL + V +LI+ Y++C L +
Sbjct: 340 AEVASL--------------------------GLLSTLS----VGGALINMYSECGNLVL 369
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
+ F + K+LVSWN ++ YA G +E + +ME+ ++P+ + VL AC
Sbjct: 370 AKSVFDSVPHKNLVSWNVLIGSYAGDGDGKEALGVHQKMEL--EGLKPDKFTFISVLHAC 427
Query: 209 AQVKGVKLGKAIHGYVLRHHIHLSTACGFVICS----CSVFNQL--------STRDVVVW 256
+ + + GKAIH + + A G + + C Q S R++V W
Sbjct: 428 SASEALAEGKAIHALIAASGLERDEAIGTALINLYGKCGSLEQARNVFLDMKSRRNLVTW 487
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL-------- 308
NS+++A G + D ++++ + + + P+ +T +SVL AC ++ QGL
Sbjct: 488 NSMLAAACTKGGLEDCVEIIHMMGLEGIMPDELTFLSVLFACSHGGSIQQGLDLFLSAGV 547
Query: 309 ----GTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
T + + ++D+ GR G +++++++ MP N V+W ++
Sbjct: 548 DYGIATNTKHYVCVVDILGRVGRLEEAQEVLNRMPFQANDVAWMTLLGA 596
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/238 (20%), Positives = 95/238 (39%), Gaps = 52/238 (21%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G ++HA + G+ +G L+ ++ +W ++G
Sbjct: 332 LEAGRKIHAEVASLGLLSTLSVGGALINMYSECGNLVLAKSVFDSVPHKNLVSWNVLIGS 391
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G +E + + M +G++PD F V ACS + GK ++ + + E +
Sbjct: 392 YAGDGDGKEALGVHQKMELEGLKPDKFTFISVLHACSASEALAEGKAIHALIAASGLERD 451
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ L++L+ KCG +E +F +M ++
Sbjct: 452 EAIGTALINLYGKCGSLEQARNVFLDMKS-----------------------------RR 482
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+LV+WN+MLA G E+ ++ M + + P+ ++ VL AC+ ++ G
Sbjct: 483 NLVTWNSMLAAACTKGGLEDCVEIIHMMGL--EGIMPDELTFLSVLFACSHGGSIQQG 538
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G G ++ N L+ YG+CG+++ +R++F + +N+ SW +M+ Y
Sbjct: 42 GFGGDRYLGNLLVQAYGKCGSVRDAREVFDRIQRRNIFSWTIMLGAY 88
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 58/150 (38%), Gaps = 31/150 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF----------------------CNWTSMMGMYN 41
G +HA + G+E +G+ L+ ++ W SM+
Sbjct: 436 GKAIHALIAASGLERDEAIGTALINLYGKCGSLEQARNVFLDMKSRRNLVTWNSMLAAAC 495
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY-----DYMISIKF 96
G E+ V + ++M +G+ PD V ACS + G D++ DY I+
Sbjct: 496 TKGGLEDCVEIIHMMGLEGIMPDELTFLSVLFACSHGGSIQQGLDLFLSAGVDYGIATNT 555
Query: 97 EGNACVKRPLLDLFIKCGRMEITSGLFEEM 126
+ CV +D+ + GR+E + M
Sbjct: 556 KHYVCV----VDILGRVGRLEEAQEVLNRM 581
>gi|413946224|gb|AFW78873.1| hypothetical protein ZEAMMB73_227843 [Zea mays]
Length = 778
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 164/345 (47%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S +G + G++E+++ +F LM + V P + A +L + +GK+++ Y
Sbjct: 288 SWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSVTLSSLLPALVDLGYFHLGKELHGYS 347
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I E + + L+D++ K G E S +FE
Sbjct: 348 IRRAVESDIFIANTLMDMYAKFGCSEKASAIFE--------------------------- 380
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
I+ +++VSWNAM+A G E L+ +EM + PN+ +L +L AC++V
Sbjct: 381 ---NIEVRNVVSWNAMIANLTQNGAEAEAFRLV--IEMQKNGECPNSFTLVNLLPACSRV 435
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
VK+GK IH + +R I + CG + + +F++ S +D V +N++I
Sbjct: 436 ASVKMGKQIHAWSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFDR-SEKDGVSYNTLI 494
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
+ +S ++L L + + +A ++ + V+ + L AC L+A QG L
Sbjct: 495 VGYSQSQCCFESLHLFQQMRLAGIEHDAVSFMGCLSACSNLSAFKQGKEIHGVLVKRLLD 554
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ F+ N+L+D+Y + G + + KIF + K++ SWN MI YG
Sbjct: 555 SHPFLANSLLDVYTKGGMLDTASKIFNRITQKDVASWNTMILGYG 599
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 121/245 (49%), Gaps = 24/245 (9%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D N+L+ FYA C + F ++ +D+VSWN++++ G E+ + +
Sbjct: 153 DVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALLTNGMLEDAKRAV--VG 210
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----IHLSTAC-------GF 237
M+++ + N SL +L AC + G +HG VL+ ++L A G
Sbjct: 211 MMRSGVPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVVNLGNALVDMYGKFGD 270
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ S VFN + ++ V WNS I F +G D L++ R + +V P +VT+ S+LPA
Sbjct: 271 LESSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSVTLSSLLPA 330
Query: 298 CLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
+ L ++ + + + F+ N L+DMY + G +K+ IF + +N+VSW
Sbjct: 331 LVDLGYFHLGKELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKASAIFENIEVRNVVSW 390
Query: 347 NVMIS 351
N MI+
Sbjct: 391 NAMIA 395
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/393 (20%), Positives = 161/393 (40%), Gaps = 77/393 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
LG ++H + I VE F+ + L++++ +W +M+
Sbjct: 338 HLGKELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKASAIFENIEVRNVVSWNAMIANL 397
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G E L M G P+ F + ACS + ++GK ++ + I +
Sbjct: 398 TQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIRRSLMSDL 457
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
V L+D++ KCG++ + +F+ +KD
Sbjct: 458 FVSNALIDVYAKCGQLNLARYIFDR-------------------------------SEKD 486
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
VS+N ++ GY+ E +L +M + ++ + +S G L+AC+ + K GK I
Sbjct: 487 GVSYNTLIVGYSQSQCCFESLHLFQQMRL--AGIEHDAVSFMGCLSACSNLSAFKQGKEI 544
Query: 221 HGYVLRH----HIHLS-------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
HG +++ H L+ T G + + +FN+++ +DV WN++I + GQ+
Sbjct: 545 HGVLVKRLLDSHPFLANSLLDVYTKGGMLDTASKIFNRITQKDVASWNTMILGYGMHGQI 604
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNAL 318
A +L + ++ + V+ ++VL C + +G + + +
Sbjct: 605 DVAFELFDLMKDDGIEYDHVSYIAVLSVCSHGGLVDRGKKYFSQMIAQNIKPQQMHYACM 664
Query: 319 IDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMI 350
+D+ GR G + +S +I MP + N W ++
Sbjct: 665 VDLLGRAGQLSESAEIIRNMPFRANSDVWGALL 697
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 14/161 (8%)
Query: 205 LAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
L A A +G+ L G L + CG + VF+++ RDVV WNS++SA +
Sbjct: 140 LHAAALRRGLLLADVFAGNTL---VTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALL 196
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA-----------CLKLAALPQGLGTGSF 313
+G + DA + ++ + V N ++VS+LPA C+ L GL +
Sbjct: 197 TNGMLEDAKRAVVGMMRSGVPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVVN 256
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ NAL+DMYG+ G ++ S +F M KN VSWN I +
Sbjct: 257 LGNALVDMYGKFGDLESSMHVFNGMQEKNEVSWNSAIGCFA 297
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 251 RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV--------------SVLP 296
R +WNS+ A + +AL + ++ + V+P+ T
Sbjct: 78 RSAFLWNSLSRALASAALPCEALRVYNRMVRSGVRPDDRTFPFALHAAAAVAQAEHPAKG 137
Query: 297 ACLKLAALPQGLGTGS-FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
A L AAL +GL F N L+ Y CG +R++F MP +++VSWN ++S
Sbjct: 138 AELHAAALRRGLLLADVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSA 194
>gi|255641766|gb|ACU21153.1| unknown [Glycine max]
Length = 529
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/377 (24%), Positives = 175/377 (46%), Gaps = 73/377 (19%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCNWTSM---------------------MGMYNVLG 44
+ HA ++V G E F+ ++L++ + +++++ + +Y
Sbjct: 38 KAHAQVVVRGHEQDPFIAARLIDKYSHFSNLDHARKVFDNLSEPDVFCCNVVIKVYANAD 97
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
+ E + + M +G+ P+++ P V KAC EG + R
Sbjct: 98 PFGEALKVHDAMRWRGITPNYYTYPFVLKACGA-------------------EGASKKGR 138
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
+ + +KCG MD D V N+L+ FYAKC+ ++VS F +I +D+VSW
Sbjct: 139 VIHEHAVKCG-----------MDLDLFVGNALVAFYAKCQDVEVSRKVFDEIPHRDIVSW 187
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
N+M++GY + G+ ++ L +M ++ P+ + VL A AQ + G IH Y+
Sbjct: 188 NSMVSGYTVNGYVDDAILLFYDMLRDESVGGPDHATFVTVLPAFAQAADIHAGYWIHCYI 247
Query: 225 LRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
++ + L +A CG+V + ++F+++S R V+VW++II + G +AL
Sbjct: 248 VKTRMGLDSAVGTGLISLYSNCGYVRMARAIFDRISDRSVIVWSAIIRCYGTHGLAQEAL 307
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALIDMY 322
L R ++ A ++P+ V + +L AC L Q G+ + ++D+
Sbjct: 308 ALFRQLVGAGLRPDGVVFLCLLSACSHAGLLEQGWHLFNAMETYGVAKSEAHYACIVDLL 367
Query: 323 GRCGAIQKSRKIFVLMP 339
GR G ++K+ + MP
Sbjct: 368 GRAGDLEKAVEFIQSMP 384
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 114/254 (44%), Gaps = 30/254 (11%)
Query: 127 DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDE 186
+QD + LID Y+ L + F + + D+ N ++ YA E + D
Sbjct: 49 EQDPFIAARLIDKYSHFSNLDHARKVFDNLSEPDVFCCNVVIKVYANADPFGEALKVHDA 108
Query: 187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS-----------TAC 235
M + PN + VL AC K G+ IH + ++ + L C
Sbjct: 109 MRW--RGITPNYYTYPFVLKACGAEGASKKGRVIHEHAVKCGMDLDLFVGNALVAFYAKC 166
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL----DLLRDVIVANVKPNTVTI 291
V S VF+++ RD+V WNS++S + +G V DA+ D+LRD V P+ T
Sbjct: 167 QDVEVSRKVFDEIPHRDIVSWNSMVSGYTVNGYVDDAILLFYDMLRDESVGG--PDHATF 224
Query: 292 VSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340
V+VLPA + A + G +G S V LI +Y CG ++ +R IF +
Sbjct: 225 VTVLPAFAQAADIHAGYWIHCYIVKTRMGLDSAVGTGLISLYSNCGYVRMARAIFDRISD 284
Query: 341 KNLVSWNVMISVYG 354
++++ W+ +I YG
Sbjct: 285 RSVIVWSAIIRCYG 298
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 99/237 (41%), Gaps = 55/237 (23%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G +H H + CG++L F+G+ L+ + +W SM+ Y V
Sbjct: 137 GRVIHEHAVKCGMDLDLFVGNALVAFYAKCQDVEVSRKVFDEIPHRDIVSWNSMVSGYTV 196
Query: 43 LGYYEEIVNLFYLMI-DKGV-RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
GY ++ + LFY M+ D+ V PDH V A ++ D G ++ Y++ + ++
Sbjct: 197 NGYVDDAILLFYDMLRDESVGGPDHATFVTVLPAFAQAADIHAGYWIHCYIVKTRMGLDS 256
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
V L+ L+ CG Y++++ F +I +
Sbjct: 257 AVGTGLISLYSNCG------------------------------YVRMARAIFDRISDRS 286
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
++ W+A++ Y G +E L +++ ++P+ + +L+AC+ ++ G
Sbjct: 287 VIVWSAIIRCYGTHGLAQEALALF--RQLVGAGLRPDGVVFLCLLSACSHAGLLEQG 341
>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
Length = 598
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/316 (28%), Positives = 148/316 (46%), Gaps = 56/316 (17%)
Query: 60 GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEIT 119
G RPD + P KAC+ R+G + + C + + GR+
Sbjct: 112 GARPDGYTLPAALKACA-----RLGGGLRE----------GCQAHAVAEKAGFLGRVP-- 154
Query: 120 SGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREE 179
V N+L+ FY C + F ++ ++D+VSW A+L+ + GG E
Sbjct: 155 ------------VQNALVTFYGACGQCGDARKVFDEMAERDVVSWTALLSAFTRGGMFME 202
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACG--- 236
+L EM D+ PN ++L+ VL AC + + GKA+HG+ R L+ G
Sbjct: 203 ALGVLAEM-----DVTPNEVTLASVLVACGNLGTARAGKAVHGWYFRREKELNLIVGNAL 257
Query: 237 ---FVIC-----SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288
+V C + VF+ L RD+V W +IS V+ + +AL++ + ++ VKP+
Sbjct: 258 LDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVFNAMQISGVKPDK 317
Query: 289 VTIVSVLPACLKLAALPQGLGTGSFV------WN-----ALIDMYGRCGAIQKSRKIFVL 337
V + +VL AC L AL G ++ W+ +++DMY +CG + + IF
Sbjct: 318 VVLSTVLSACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQE 377
Query: 338 MPHKNLVSWNVMISVY 353
MP KN+ SWN +I+ +
Sbjct: 378 MPLKNVSSWNALINGF 393
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/345 (24%), Positives = 157/345 (45%), Gaps = 59/345 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+++ + G + E + + M V P+ V AC L R GK V+ +
Sbjct: 186 SWTALLSAFTRGGMFMEALGVLAEM---DVTPNEVTLASVLVACGNLGTARAGKAVHGWY 242
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
E + + +V N+L+D Y KC L ++
Sbjct: 243 FR------------------------------REKELNLIVGNALLDMYVKCEKLDLARR 272
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +D+VSW M++G E + + M++ + ++P+ + LS VL+ACA +
Sbjct: 273 VFDMLLARDIVSWTVMISGLVQCKRPSEALEVFNAMQI--SGVKPDKVVLSTVLSACASL 330
Query: 212 KGVKLGKAIHGYVLRHHI----HLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
++ G+ +H Y+ R I H+ T+ CG + + S+F ++ ++V WN++I
Sbjct: 331 GALESGRWVHEYIERKGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALI 390
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----LGTGSFV- 314
+ F G+ +ALD ++ + + PN VT ++VL AC + +G L T S+
Sbjct: 391 NGFALHGRGREALDCFDRMVASGLHPNEVTFITVLGACCHSGLVQEGRQLFELMTKSYKL 450
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
+ ++D+ GR G IQ++ + MP + + +W ++S
Sbjct: 451 SPWEDHYGCMVDLLGRAGLIQEAYDVIKAMPMRPGVFTWVTLLSA 495
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 17/115 (14%)
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVAN-----VKPNTVTIVSVLPACLKLAA-LPQGLG 309
+N++IS+ +G A ++VA+ +P+ T+ + L AC +L L +G
Sbjct: 80 FNALISSLTHAGDPSAAFRAFALLLVASGAGAGARPDGYTLPAALKACARLGGGLREGCQ 139
Query: 310 TGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ V NAL+ YG CG +RK+F M +++VSW ++S +
Sbjct: 140 AHAVAEKAGFLGRVPVQNALVTFYGACGQCGDARKVFDEMAERDVVSWTALLSAF 194
>gi|297816638|ref|XP_002876202.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322040|gb|EFH52461.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 769
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 171/349 (48%), Gaps = 60/349 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGV-RPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W+S++ ++ LG+ E ++ M+ GV P+ ++ KACS L G ++
Sbjct: 233 SWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGL 292
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
I ++ GNA + SL D YA+C +L +
Sbjct: 293 CIKLELTGNA------------------------------IAGCSLCDMYARCGFLDSAR 322
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F++I++ D SWN ++AG A G+ +E ++ EM + P+ ISL +L CAQ
Sbjct: 323 RVFNQIERPDTASWNVIIAGLANNGYADEAVSVFSEMR--NSGFIPDAISLRSLL--CAQ 378
Query: 211 VKGVKL--GKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTR-DVVVW 256
K + L G IH ++++ + + T C + C ++F + D V W
Sbjct: 379 TKPMALCQGMQIHSFIIKCGFLADLSVCNSLLTMYTFCSDLYCCFNLFEDFRNKADSVSW 438
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------P 305
N+I++A ++ Q V+ L L + ++V+ +P+ +T+ ++L C+++++L
Sbjct: 439 NAILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSWK 498
Query: 306 QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
GL F+ N LIDMY +CG+++++R+IF M + ++VSW+ +I Y
Sbjct: 499 TGLVLEQFIKNGLIDMYAKCGSLRQARRIFDSMDNGDVVSWSTLIVGYA 547
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 119/247 (48%), Gaps = 27/247 (10%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D ++NN ++ Y KC L+ + F + +++LVS+ +++ GY+ G E L ++
Sbjct: 98 DTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQEAEAITLY--LK 155
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV--LRHHIHLSTACGFVICSCSVFN 246
M+Q D+ P+ + ++ ACA V LGK +H V L HL A +I FN
Sbjct: 156 MLQADLVPDQFAFGSIIKACACAGDVVLGKQLHAQVIKLESSSHL-IAQNALIAMYVRFN 214
Query: 247 QLS----------TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV-KPNTVTIVSVL 295
Q+S +D++ W+SII+ F + G +AL L++++ V PN S L
Sbjct: 215 QMSDASKVFYGIPAKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSL 274
Query: 296 PACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLV 344
AC L G L + +L DMY RCG + +R++F + +
Sbjct: 275 KACSSLLRPDYGSQIHGLCIKLELTGNAIAGCSLCDMYARCGFLDSARRVFNQIERPDTA 334
Query: 345 SWNVMIS 351
SWNV+I+
Sbjct: 335 SWNVIIA 341
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 148/344 (43%), Gaps = 54/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
++TS++ Y+ G E + L+ M+ + PD F + KAC+ D +GK ++ +
Sbjct: 132 SYTSVITGYSQNGQEAEAITLYLKMLQADLVPDQFAFGSIIKACACAGDVVLGKQLHAQV 191
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I ++E +S L + N+LI Y + + +
Sbjct: 192 I----------------------KLESSSHL--------IAQNALIAMYVRFNQMSDASK 221
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F I KDL+SW++++AG++ GF E + L EM PN L AC+ +
Sbjct: 222 VFYGIPAKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGV-FHPNEYIFGSSLKACSSL 280
Query: 212 KGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
G IHG ++ + + CGF+ + VFNQ+ D WN II
Sbjct: 281 LRPDYGSQIHGLCIKLELTGNAIAGCSLCDMYARCGFLDSARRVFNQIERPDTASWNVII 340
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------- 313
+ +G +A+ + ++ + P+ +++ S+L A K AL QG+ SF
Sbjct: 341 AGLANNGYADEAVSVFSEMRNSGFIPDAISLRSLLCAQTKPMALCQGMQIHSFIIKCGFL 400
Query: 314 ----VWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
V N+L+ MY C + +F +K + VSWN +++
Sbjct: 401 ADLSVCNSLLTMYTFCSDLYCCFNLFEDFRNKADSVSWNAILTA 444
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 146/346 (42%), Gaps = 57/346 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W ++ GY +E V++F M + G PD + C++ K +
Sbjct: 335 SWNVIIAGLANNGYADEAVSVFSEMRNSGFIPDAISLRSLL--CAQTKPMAL-------- 384
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
C + IKCG + D V NSL+ Y C L
Sbjct: 385 ---------CQGMQIHSFIIKCGFL-----------ADLSVCNSLLTMYTFCSDLYCCFN 424
Query: 152 KFSKIKQK-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + K D VSWNA+L A + V L M+ ++ +P+ I++ +L C +
Sbjct: 425 LFEDFRNKADSVSWNAILT--ACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVE 482
Query: 211 VKGVKLGKAIH------GYVLRHHIH-----LSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ +KLG +H G VL I + CG + + +F+ + DVV W+++
Sbjct: 483 ISSLKLGSQVHCYSWKTGLVLEQFIKNGLIDMYAKCGSLRQARRIFDSMDNGDVVSWSTL 542
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC---------LKLAALPQ---G 307
I + +SG +AL L R++ + ++PN VT V VL AC LKL A+ Q G
Sbjct: 543 IVGYAQSGFGEEALILFREMKSSGIEPNHVTFVGVLTACSHVGLVEEGLKLYAIMQTEHG 602
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ + ++D+ R G + ++ + M ++V W ++S
Sbjct: 603 ISPTKEHCSCVVDLLARAGHLNEAERFIDEMKLEPDVVVWKTLLSA 648
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 124/301 (41%), Gaps = 67/301 (22%)
Query: 4 GIQVHAHLIVCG----VELCAFLGS------------QLLEVFCN------WTSMMGMYN 41
G+Q+H+ +I CG + +C L + L E F N W +++
Sbjct: 387 GMQIHSFIIKCGFLADLSVCNSLLTMYTFCSDLYCCFNLFEDFRNKADSVSWNAILTACL 446
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
E++ LF LM+ PDH + + C E+ ++G V+ Y
Sbjct: 447 QHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSWKTGL----- 501
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+L+ FIK N LID YAKC L+ + F + D+
Sbjct: 502 ----VLEQFIK---------------------NGLIDMYAKCGSLRQARRIFDSMDNGDV 536
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSW+ ++ GYA GF EE L EM+ + ++PN ++ GVL AC+ V V+ G ++
Sbjct: 537 VSWSTLIVGYAQSGFGEEALILFREMK--SSGIEPNHVTFVGVLTACSHVGLVEEGLKLY 594
Query: 222 GYVLRHH------------IHLSTACGFVICSCSVFNQLSTR-DVVVWNSIISAFVRSGQ 268
+ H + L G + + +++ DVVVW +++SA G
Sbjct: 595 AIMQTEHGISPTKEHCSCVVDLLARAGHLNEAERFIDEMKLEPDVVVWKTLLSACKTQGN 654
Query: 269 V 269
V
Sbjct: 655 V 655
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 87/174 (50%), Gaps = 22/174 (12%)
Query: 203 GVLAACAQVKGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTR 251
++ AC+ + + G+ IH ++L H + + CG + + VF+ + R
Sbjct: 69 SLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPER 128
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL---------KLA 302
++V + S+I+ + ++GQ +A+ L ++ A++ P+ S++ AC +L
Sbjct: 129 NLVSYTSVITGYSQNGQEAEAITLYLKMLQADLVPDQFAFGSIIKACACAGDVVLGKQLH 188
Query: 303 ALPQGLGTGSFV--WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
A L + S + NALI MY R + + K+F +P K+L+SW+ +I+ +
Sbjct: 189 AQVIKLESSSHLIAQNALIAMYVRFNQMSDASKVFYGIPAKDLISWSSIIAGFS 242
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 73/145 (50%), Gaps = 18/145 (12%)
Query: 224 VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG---QVVDALDLLRDVI 280
+LR +S + + + SV + + T +++ N I++ R+ + ++A D +
Sbjct: 1 MLRLGARVSVSNSQIPATSSVVSTIKTEELM--NDHINSLCRNSFYREALEAFDFAQKN- 57
Query: 281 VANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA-----------LIDMYGRCGAIQ 329
++ K T +S++ AC +L QG + N+ ++ MYG+CG+++
Sbjct: 58 -SSFKIRLRTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLR 116
Query: 330 KSRKIFVLMPHKNLVSWNVMISVYG 354
+R++F MP +NLVS+ +I+ Y
Sbjct: 117 DAREVFDFMPERNLVSYTSVITGYS 141
Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 30/152 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++LG QVH + G+ L F+ + L++++ +W++++
Sbjct: 486 LKLGSQVHCYSWKTGLVLEQFIKNGLIDMYAKCGSLRQARRIFDSMDNGDVVSWSTLIVG 545
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM-----ISI 94
Y G+ EE + LF M G+ P+H V ACS + G +Y M IS
Sbjct: 546 YAQSGFGEEALILFREMKSSGIEPNHVTFVGVLTACSHVGLVEEGLKLYAIMQTEHGISP 605
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126
E +CV +DL + G + +EM
Sbjct: 606 TKEHCSCV----VDLLARAGHLNEAERFIDEM 633
>gi|255561305|ref|XP_002521663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539054|gb|EEF40650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 578
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 97/348 (27%), Positives = 170/348 (48%), Gaps = 58/348 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W ++ Y GY+ + +F M + G+ P + V C L D ++G+ ++ +
Sbjct: 94 SWNCIINGYFQNGYFTQGFIMFKEMYECGIVPKPELVASVVSVCVRLGDMKLGRAIHALV 153
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
L+D GR+ ++ V SL+D+Y K ++
Sbjct: 154 --------------LID-----GRIA----------KEIFVLTSLVDWYFKSGDSLMALR 184
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNTISLSGVLAACAQ 210
F +I+ K++VSW A+++G + + LD +Q + ++PN ++L +L A A+
Sbjct: 185 VFDQIEVKNVVSWTALVSGCSA---NLDYNMALDCFRAMQINGVRPNRVTLIAILPAFAE 241
Query: 211 VKGVKLGKAIHGYVLRH-------------HIHLSTACGFVICSCSVFNQLSTRDVVVWN 257
+ K GK IHGY RH HI+ + G + + F + + +DVV+W+
Sbjct: 242 LGCAKTGKEIHGYAFRHGFDLDHHFLSSLIHIYCRSREGLQLAKLT-FERSNVKDVVMWS 300
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGT------- 310
SII ++ RS ++AL L R + +PN+VT+++V+ AC L +L G GT
Sbjct: 301 SIIGSYCRSADSIEALKLFRWMRADGTEPNSVTLLAVITACTTLTSLKNGYGTHGYIVKC 360
Query: 311 ----GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+++ NALI+MY +CG + S +IF M K+ VSW+ +I+ YG
Sbjct: 361 GLNFDTYIGNALINMYSKCGCVVASHQIFKEMHIKDSVSWSTLITAYG 408
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/346 (23%), Positives = 151/346 (43%), Gaps = 57/346 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+++ + Y ++ F M GVRP+ + A +EL + GK+++ Y
Sbjct: 196 SWTALVSGCSANLDYNMALDCFRAMQINGVRPNRVTLIAILPAFAELGCAKTGKEIHGYA 255
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRY-LKVSH 150
F+ +D FL +SLI Y + R L+++
Sbjct: 256 FRHGFD----------------------------LDHHFL--SSLIHIYCRSREGLQLAK 285
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + KD+V W++++ Y E L M T +PN+++L V+ AC
Sbjct: 286 LTFERSNVKDVVMWSSIIGSYCRSADSIEALKLFRWMRADGT--EPNSVTLLAVITACTT 343
Query: 211 VKGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSI 259
+ +K G HGY+++ ++ T CG V+ S +F ++ +D V W+++
Sbjct: 344 LTSLKNGYGTHGYIVKCGLNFDTYIGNALINMYSKCGCVVASHQIFKEMHIKDSVSWSTL 403
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL---------GT 310
I+A+ G +AL L ++ + V+P+ +T ++VL AC + +G G
Sbjct: 404 ITAYGLHGHGKEALCLFHEMQLQGVEPDAMTFLAVLSACNHSGLVKEGQQIFDNVKKDGK 463
Query: 311 GSFV---WNALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMISV 352
S + L+D+ G+ G + + I MP K + W+ ++S
Sbjct: 464 VSLTVEHYACLVDLLGKSGKVDDAFDILRAMPMKPSTTIWSSLVSA 509
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 142/334 (42%), Gaps = 56/334 (16%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G +I+ + + + + ++ P V KACS + G +Y ++
Sbjct: 5 GLNHQILKFYKELHSSDIYANAYIIPSVIKACSFSNCHHFGIQLYSIVLK---------- 54
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
SGL D DF++ NS I FYAK + + F + KD +S
Sbjct: 55 ----------------SGL----DSDFVICNSFISFYAKSSCTESALKVFDTMPLKDPIS 94
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG- 222
WN ++ GY G+ + + EM + + P ++ V++ C ++ +KLG+AIH
Sbjct: 95 WNCIINGYFQNGYFTQ--GFIMFKEMYECGIVPKPELVASVVSVCVRLGDMKLGRAIHAL 152
Query: 223 -----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+VL + G + + VF+Q+ ++VV W +++S +
Sbjct: 153 VLIDGRIAKEIFVLTSLVDWYFKSGDSLMALRVFDQIEVKNVVSWTALVSGCSANLDYNM 212
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALID 320
ALD R + + V+PN VT++++LPA +L A G ++LI
Sbjct: 213 ALDCFRAMQINGVRPNRVTLIAILPAFAELGCAKTGKEIHGYAFRHGFDLDHHFLSSLIH 272
Query: 321 MYGRC-GAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+Y R +Q ++ F K++V W+ +I Y
Sbjct: 273 IYCRSREGLQLAKLTFERSNVKDVVMWSSIIGSY 306
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 64/140 (45%), Gaps = 30/140 (21%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G H +++ CG+ ++G+ L+ ++ +W++++ Y +
Sbjct: 350 GYGTHGYIVKCGLNFDTYIGNALINMYSKCGCVVASHQIFKEMHIKDSVSWSTLITAYGL 409
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM-----ISIKFE 97
G+ +E + LF+ M +GV PD V AC+ + G+ ++D + +S+ E
Sbjct: 410 HGHGKEALCLFHEMQLQGVEPDAMTFLAVLSACNHSGLVKEGQQIFDNVKKDGKVSLTVE 469
Query: 98 GNACVKRPLLDLFIKCGRME 117
AC L+DL K G+++
Sbjct: 470 HYAC----LVDLLGKSGKVD 485
>gi|255547019|ref|XP_002514567.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546171|gb|EEF47673.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 515
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 173/348 (49%), Gaps = 30/348 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGV---RPDHFVCPKVYKACSELKDYRVGKDVY 88
+W +++ Y G + V + M+ GV F + + EL D +G+ ++
Sbjct: 107 SWNTILSGYASYGSVSDAVKAYNSMMRDGVFNLNRITFSTMLILASSRELVD--LGRQIH 164
Query: 89 DYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLK 147
+++ F G V PL+D++ K G + +F+EM D++ +++N++I K ++
Sbjct: 165 GHIMKFGFGGYVFVGSPLVDMYAKTGLVYEAKKVFDEMPDRNVVMHNTMITGLLKFGMME 224
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
S F +K++D +SW M+ G G EE + +M + M T VL A
Sbjct: 225 DSKRLFHGMKERDNISWTTMITGLVQNGLEEEAIDFFRQMRLDGIGMDQYT--FGSVLTA 282
Query: 208 CAQVKGVKLGKAIHGYVLRH----HIHLSTACGFVICSC-------SVFNQLSTRDVVVW 256
C + ++ GK +H +++R ++ + +A + C C +VF ++ ++VV W
Sbjct: 283 CGGLTALREGKQVHAFIIRSDCTDNVFVGSALVDMYCKCKILRYAEAVFKRMKYKNVVSW 342
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG--------- 307
+I+ + ++G +A+ + D+ ++P+ T+ SV+ +C LA+L +G
Sbjct: 343 TAILVGYGQNGFSEEAVKVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALV 402
Query: 308 --LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L + V NAL+ +YG+CG+I+ S ++F M ++ VSW +IS Y
Sbjct: 403 SGLISSITVSNALVTLYGKCGSIEDSDRLFNEMNFRDEVSWTALISGY 450
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 144/303 (47%), Gaps = 47/303 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ G EE ++ F M G+ D + V AC L R GK V+ ++
Sbjct: 240 SWTTMITGLVQNGLEEEAIDFFRQMRLDGIGMDQYTFGSVLTACGGLTALREGKQVHAFI 299
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I R + T +F V ++L+D Y KC+ L+ +
Sbjct: 300 I----------------------RSDCTDNVF--------VGSALVDMYCKCKILRYAEA 329
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++K K++VSW A+L GY GF EE + +M+ + ++P+ +L V+++CA +
Sbjct: 330 VFKRMKYKNVVSWTAILVGYGQNGFSEEAVKVFCDMQ--RNGIEPDDFTLGSVISSCANL 387
Query: 212 KGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
++ G H L I +S A CG + S +FN+++ RD V W ++I
Sbjct: 388 ASLEEGAQFHCRALVSGLISSITVSNALVTLYGKCGSIEDSDRLFNEMNFRDEVSWTALI 447
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALID 320
S + + G+ + ++L ++ +KP+ VT + VL AC + + + G ++++++
Sbjct: 448 SGYAQFGKARETIELFERMLAHGLKPDAVTFIGVLLACSRAGLVAR----GQQFFDSMLE 503
Query: 321 MYG 323
YG
Sbjct: 504 EYG 506
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/336 (24%), Positives = 146/336 (43%), Gaps = 55/336 (16%)
Query: 73 KACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ-DFL 131
K C E ++ K ++ ++I + L++ + K G + LF+ M Q +
Sbjct: 16 KFCCETRNQSQAKKLHCHIIKTLANPEPFLYNNLMNAYGKLGNIAYARHLFDGMPQRNSF 75
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
N+++ Y+K +L FS + +D VSWN +L+GYA G + + M M
Sbjct: 76 SWNTILSAYSKSGHLPKMKEIFSLMPNRDGVSWNTILSGYASYGSVSDAVKAYNSM-MRD 134
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVIC 240
N I+ S +L + + V LG+ IHG++++ + + G V
Sbjct: 135 GVFNLNRITFSTMLILASSRELVDLGRQIHGHIMKFGFGGYVFVGSPLVDMYAKTGLVYE 194
Query: 241 SCSVFNQLSTRDVVV-------------------------------WNSIISAFVRSGQV 269
+ VF+++ R+VV+ W ++I+ V++G
Sbjct: 195 AKKVFDEMPDRNVVMHNTMITGLLKFGMMEDSKRLFHGMKERDNISWTTMITGLVQNGLE 254
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNAL 318
+A+D R + + + + T SVL AC L AL +G + FV +AL
Sbjct: 255 EEAIDFFRQMRLDGIGMDQYTFGSVLTACGGLTALREGKQVHAFIIRSDCTDNVFVGSAL 314
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+DMY +C ++ + +F M +KN+VSW ++ YG
Sbjct: 315 VDMYCKCKILRYAEAVFKRMKYKNVVSWTAILVGYG 350
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 99/246 (40%), Gaps = 53/246 (21%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G QVHA +I F+GS L++++C +WT+++ Y
Sbjct: 292 GKQVHAFIIRSDCTDNVFVGSALVDMYCKCKILRYAEAVFKRMKYKNVVSWTAILVGYGQ 351
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G+ EE V +F M G+ PD F V +C+ L G + + + V
Sbjct: 352 NGFSEEAVKVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISSITV 411
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L+ L+ KCG +E + LF EM+ +D V
Sbjct: 412 SNALVTLYGKCGSIEDSDRLFNEMN------------------------------FRDEV 441
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW A+++GYA G E L + M+ ++P+ ++ GVL AC++ V G+
Sbjct: 442 SWTALISGYAQFGKARETIELFE--RMLAHGLKPDAVTFIGVLLACSRAGLVARGQQFFD 499
Query: 223 YVLRHH 228
+L +
Sbjct: 500 SMLEEY 505
>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
Length = 1026
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 112/430 (26%), Positives = 184/430 (42%), Gaps = 81/430 (18%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF--CN-------------------WTSMMGMYNV 42
G QVH +++ G E ++ L+ ++ CN WTSM+G Y
Sbjct: 179 GRQVHCNVVKMGFESISYCEGALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIK 238
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY-----------DYM 91
+G EE V +F M G PD V A +L D++ + M
Sbjct: 239 VGLPEEAVKVFQEMEKVGQEPDQVAFVTVINAYVDLGRLDNASDLFSRMPNRNVVAWNLM 298
Query: 92 ISIKFEGNACVK-----RPLLDLFIKCGRMEITS--------------------GLFEEM 126
IS +G V+ + + IK R + S L + +
Sbjct: 299 ISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQGL 358
Query: 127 DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDE 186
+ V +SL+ YAKC ++ + F + ++++V WNAML GY G+ EV L
Sbjct: 359 HSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELF-- 416
Query: 187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTAC 235
M P+ + S +L+ACA +K + LG +H ++++ + +
Sbjct: 417 FNMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKS 476
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
G + + F + RD V WN II +V+ V+A L R + + + P+ V++ S+L
Sbjct: 477 GALEDARQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASIL 536
Query: 296 PACLKLAALPQG-------LGTGS----FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLV 344
AC + L QG + TG + ++LIDMY +CGAI + KI MP +++V
Sbjct: 537 SACASVRGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVV 596
Query: 345 SWNVMISVYG 354
S N +I+ Y
Sbjct: 597 SMNALIAGYA 606
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 150/332 (45%), Gaps = 67/332 (20%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ M++ G+ +V F L+ + GV P+ F V +C+ L+ + G+ V+ ++
Sbjct: 128 WNSILSMHSKQGFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVV 187
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ FE + + +LI YAKC +L +
Sbjct: 188 KMGFESISYCE------------------------------GALIGMYAKCNFLTDARSI 217
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + D VSW +M+ GY G EE + EME + +P+ ++ V+ A
Sbjct: 218 FDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKV--GQEPDQVAFVTVINAY---- 271
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
V LG+ L A +F+++ R+VV WN +IS + G V+A
Sbjct: 272 -VDLGR------------LDNAS-------DLFSRMPNRNVVAWNLMISGHAKGGYGVEA 311
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDM 321
++ +++ A +K T+ SVL A LA AL QGL + +V ++L+ M
Sbjct: 312 IEFFQNMRKAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSM 371
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
Y +CG ++ ++K+F + +N+V WN M+ Y
Sbjct: 372 YAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGY 403
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 101/396 (25%), Positives = 175/396 (44%), Gaps = 79/396 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGM--------------YNVL--G 44
++LG Q+H+ +I F+G+ L++++ ++ +NV+ G
Sbjct: 444 LDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVG 503
Query: 45 YYEE-----IVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y +E +LF M G+ PD + AC+ ++ GK V+
Sbjct: 504 YVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQGKQVH----------- 552
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
C L +K G+ + +SLID YAKC + +H + + ++
Sbjct: 553 -C-------LSVKTGQ-----------ETKLYSGSSLIDMYAKCGAIDSAHKILACMPER 593
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+VS NA++AGYA E+ NL +M+ + I+ + +L AC + + + LG+
Sbjct: 594 SVVSMNALIAGYAQINL-EQAVNLF--RDMLVEGINSTEITFASLLDACHEQQKLNLGRQ 650
Query: 220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDV-------------VVWNSIISAFVRS 266
IH +L+ + L V N L T D VVW ++IS ++
Sbjct: 651 IHSLILKMGLQLDDEFLGVSLLGMYMNSLRTTDASVLFSEFSNPKSAVVWTAMISGLSQN 710
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN---------- 316
V AL L +++ NV P+ T VS L AC ++++ G T S +++
Sbjct: 711 DCSVVALQLYKEMRSCNVLPDQATFVSALRACAVVSSIKDGTETHSLIFHTGFDSDELTS 770
Query: 317 -ALIDMYGRCGAIQKSRKIFVLMPH-KNLVSWNVMI 350
AL+DMY +CG ++ S ++F M K+++SWN MI
Sbjct: 771 SALVDMYAKCGDVKSSMQVFKEMSRKKDVISWNSMI 806
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 95/396 (23%), Positives = 163/396 (41%), Gaps = 78/396 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
++ G+ VHA + G+ ++GS L+ ++ W +M+G
Sbjct: 343 LDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGG 402
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y GY E++ LF+ M G PD F + AC+ LK +G ++ +I KF N
Sbjct: 403 YVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASN 462
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V L+D++ K G +E FE I+ +
Sbjct: 463 LFVGNALVDMYAKSGALEDARQQFE------------------------------LIRNR 492
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D VSWN ++ GY E +L M ++ + P+ +SL+ +L+ACA V+G++ GK
Sbjct: 493 DNVSWNVIIVGYVQEEDEVEAFHLFRRMNLL--GILPDEVSLASILSACASVRGLEQGKQ 550
Query: 220 IHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H Y I + CG + + + + R VV N++I+ + +
Sbjct: 551 VHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNALIAGYAQI-N 609
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS------------FVWN 316
+ A++L RD++V + +T S+L AC + L G S F+
Sbjct: 610 LEQAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQIHSLILKMGLQLDDEFLGV 669
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPH-KNLVSWNVMIS 351
+L+ MY + +F + K+ V W MIS
Sbjct: 670 SLLGMYMNSLRTTDASVLFSEFSNPKSAVVWTAMIS 705
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 116/232 (50%), Gaps = 37/232 (15%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
++ N ++D YAKC + + F +++ KD+++WN++L+ ++ GF V +
Sbjct: 95 VLGNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQGFPHLVVKYFG--LLW 152
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVI 239
+ + PN + + VL++CA+++ VK G+ +H V++ I + C F+
Sbjct: 153 NSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCEGALIGMYAKCNFLT 212
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ S+F+ D V W S+I +++ G +A+ + +++ +P+ V V+V+
Sbjct: 213 DARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEPDQVAFVTVI---- 268
Query: 300 KLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
NA +D+ G + + +F MP++N+V+WN+MIS
Sbjct: 269 ----------------NAYVDL----GRLDNASDLFSRMPNRNVVAWNLMIS 300
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/356 (21%), Positives = 142/356 (39%), Gaps = 68/356 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVL----------------G 44
+E G QVH + G E + GS L++++ ++ + +L G
Sbjct: 545 LEQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNALIAG 604
Query: 45 Y----YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE-GN 99
Y E+ VNLF M+ +G+ + AC E + +G+ ++ ++ + + +
Sbjct: 605 YAQINLEQAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQIHSLILKMGLQLDD 664
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ LL +++ R S LF E K
Sbjct: 665 EFLGVSLLGMYMNSLRTTDASVLFSEFSN-----------------------------PK 695
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
V W AM++G + L EM ++ P+ + L ACA V +K G
Sbjct: 696 SAVVWTAMISGLSQNDCSVVALQLYKEMR--SCNVLPDQATFVSALRACAVVSSIKDGTE 753
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLS-TRDVVVWNSIISAFVRSG 267
H + + + CG V S VF ++S +DV+ WNS+I F ++G
Sbjct: 754 THSLIFHTGFDSDELTSSALVDMYAKCGDVKSSMQVFKEMSRKKDVISWNSMIVGFAKNG 813
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYG 323
DAL + ++ ++V P+ VT + VL AC + + G +++ ++++YG
Sbjct: 814 YAEDALRVFDEMKQSHVTPDDVTFLGVLTACSHSGRVSE----GRLIFDMMVNLYG 865
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 82/195 (42%), Gaps = 27/195 (13%)
Query: 180 VTNLLDEMEMIQT----DMQPNTISLSGVLAACAQVKGVKLG---KAIHGYVLRHHIHLS 232
+ N L + + ++T D P +S + +KLG K + G V+ + L
Sbjct: 48 LQNCLQKSKQVKTHSLFDEIPQRLSQFSTTNKIIHAQSLKLGFWSKGVLGNVI---VDLY 104
Query: 233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG---QVVDALDLLRDVIVANVKPNTV 289
C V + F QL +D++ WNSI+S + G VV LL + + V PN
Sbjct: 105 AKCADVDYAERAFKQLEDKDILAWNSILSMHSKQGFPHLVVKYFGLLWN---SGVWPNEF 161
Query: 290 TIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLM 338
T VL +C +L + G + S+ ALI MY +C + +R IF
Sbjct: 162 TFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCEGALIGMYAKCNFLTDARSIFDGA 221
Query: 339 PHKNLVSWNVMISVY 353
+ VSW MI Y
Sbjct: 222 VELDKVSWTSMIGGY 236
>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 809
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 160/347 (46%), Gaps = 58/347 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ Y+ G + + M ++ ++P V A S L+ VGK+++ Y
Sbjct: 203 SWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYA 262
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN--NSLIDFYAKCRYLKVS 149
+ F D LVN +L+D YAKC L+ +
Sbjct: 263 MRSGF--------------------------------DSLVNISTALVDMYAKCGSLETA 290
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + ++++VSWN+M+ Y +E +L +M+ ++P +S+ G L ACA
Sbjct: 291 RQLFDGMLERNVVSWNSMIDAYVQNENPKEA--MLIFQKMLDEGVKPTDVSVMGALHACA 348
Query: 210 QVKGVKLGKAIHGY-----------VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ ++ G+ IH V+ I + C V + S+F +L +R +V WN+
Sbjct: 349 DLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNA 408
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------- 307
+I F ++G+ +DAL+ + VKP+T T VSV+ A +L+
Sbjct: 409 MILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSC 468
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L FV AL+DMY +CGAI +R IF +M +++ +WN MI YG
Sbjct: 469 LDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYG 515
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 153/337 (45%), Gaps = 55/337 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y +E + +F M+D+GV+P AC++L D G+ ++
Sbjct: 304 SWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIH--- 360
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
++ + GL D++ V NSLI Y KC+ + +
Sbjct: 361 -----------------------KLSVELGL----DRNVSVVNSLISMYCKCKEVDTAAS 393
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K++ + LVSWNAM+ G+A G + N +M ++P+T + V+ A A++
Sbjct: 394 MFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMR--SRTVKPDTFTYVSVITAIAEL 451
Query: 212 KGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
K IHG V+R ++ ++TA CG ++ + +F+ +S R V WN++I
Sbjct: 452 SITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMI 511
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
+ G AL+L ++ +KPN VT +SV+ AC + GL +
Sbjct: 512 DGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSI 571
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
+ A++D+ GR G + ++ + MP K V+
Sbjct: 572 ELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVN 608
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 153/322 (47%), Gaps = 59/322 (18%)
Query: 62 RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK--RPLLDLFIKCGRMEIT 119
R HF+ + Y + +VY++ ++ E + +K R +L L K
Sbjct: 20 RHRHFLSERNY----------IPANVYEHPAALLLERCSSLKELRQILPLVFK------- 62
Query: 120 SGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK--FSKIKQKDLVSWNAMLAGYALGGFR 177
+GL+ Q+ L+ + CRY V F I K V ++ ML G+A
Sbjct: 63 NGLY----QEHFFQTKLVSLF--CRYGSVDEAARVFEPIDSKLNVLYHTMLKGFA----- 111
Query: 178 EEVTNLLDEME----MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS- 232
+V++L ++ M D++P + + +L C +++GK IHG +++ L
Sbjct: 112 -KVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDL 170
Query: 233 ----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
C V + VF+++ RD+V WN+I++ + ++G AL++++ +
Sbjct: 171 FAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEE 230
Query: 283 NVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKS 331
N+KP+ +TIVSVLPA L A+ G + + AL+DMY +CG+++ +
Sbjct: 231 NLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETA 290
Query: 332 RKIFVLMPHKNLVSWNVMISVY 353
R++F M +N+VSWN MI Y
Sbjct: 291 RQLFDGMLERNVVSWNSMIDAY 312
>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
lyrata]
gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
lyrata]
Length = 1134
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/347 (25%), Positives = 157/347 (45%), Gaps = 54/347 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT++M + + G ++LF M +G+ P+ F KAC L G ++ +
Sbjct: 437 SWTALMSGHVLNGDLNGSLSLFTEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFC 496
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ I FE V L+D++ KCGR+ +F ++V SLI
Sbjct: 497 LKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFR-----WMVGRSLI-------------- 537
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
SWNAM+AGY G+ M+ + +P+ +L+ +L AC+
Sbjct: 538 -----------SWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKACSST 586
Query: 212 KGVKLGKAIHGYVLRHHIH-------------LSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ GK IHG+++R H L CG + + F+Q+ + ++ W+S
Sbjct: 587 GMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKTMISWSS 646
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL---------- 308
+I + + G V+A+ L + + + + ++ + S++ A L QG
Sbjct: 647 LILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQMQALVVKLP 706
Query: 309 -GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G + V N+L+DMY +CG + ++ K F M K+++SW VMI+ YG
Sbjct: 707 SGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYG 753
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/399 (21%), Positives = 168/399 (42%), Gaps = 77/399 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G+Q+H + G E+ +G+ L++++ +W +M+
Sbjct: 486 LEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRWMVGRSLISWNAMIAG 545
Query: 40 YNVLGYYEEIVNLFYLMIDKGV--RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
Y GY + F +M + + RPD F + KACS GK ++ +++ F
Sbjct: 546 YVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFH 605
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
C +G SL+D Y KC L + F +IK
Sbjct: 606 ---------------CPSSATITG-------------SLVDLYVKCGNLFSARKAFDQIK 637
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+K ++SW++++ GYA G E L ++ + + Q ++ LS ++ A ++ G
Sbjct: 638 EKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSS--QIDSFVLSSIIGVFADFALLQQG 695
Query: 218 KAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
K + V++ L T+ CG V + F ++ +DV+ W +I+ + +
Sbjct: 696 KQMQALVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKH 755
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP------------QGLGTGSFV 314
G A+ + ++ N++P+ V ++VL AC + QG+
Sbjct: 756 GLGKKAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPRVEH 815
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
+ ++D+ GR G +++++ + MP K N+ W ++S+
Sbjct: 816 YACVVDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSL 854
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 120/252 (47%), Gaps = 28/252 (11%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
+ + +N LID Y KCR +++ F + ++++VSW A+++G+ L G +L EM
Sbjct: 403 NLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMG 462
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-----------HHIHLSTACGF 237
+ + PN + S L AC + ++ G IHG+ L+ + + + CG
Sbjct: 463 --RQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGR 520
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK--PNTVTIVSVL 295
+ + VF + R ++ WN++I+ +V +G AL + A +K P+ T+ S+L
Sbjct: 521 INEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLL 580
Query: 296 PACLKLAALPQGLGTGSF-------------VWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
AC + G F + +L+D+Y +CG + +RK F + K
Sbjct: 581 KACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKT 640
Query: 343 LVSWNVMISVYG 354
++SW+ +I Y
Sbjct: 641 MISWSSLILGYA 652
>gi|357475145|ref|XP_003607858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355508913|gb|AES90055.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 708
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/338 (28%), Positives = 155/338 (45%), Gaps = 47/338 (13%)
Query: 28 EVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDV 87
+V C WT+++ + G E + L M+ G P+ + KAC E K ++ G +
Sbjct: 315 DVVC-WTTIITACSQHGLGHEALLLLSQMLVDGFFPNEYTICAALKACGENKAFKCGTQL 373
Query: 88 YDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147
+ A VK+ D + SLID YAKC +
Sbjct: 374 H----------GAIVKKIC--------------------KSDVFIGTSLIDMYAKCGEIV 403
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
S F ++K ++ +W ++++GYA GF EE N M+ + + N +L V+ A
Sbjct: 404 SSKKVFDRMKVRNTATWTSIISGYARNGFGEEALNFFRLMK--RKKVYVNKSTLVCVMTA 461
Query: 208 CAQVKGVKLGKAIHGYVLRH----HIHLSTACGFVICSC-------SVFNQLSTRDVVVW 256
C +K +G+ +H ++ ++++ T + C C +V + RDVV W
Sbjct: 462 CGTIKASLIGREVHAQKIKSVILTNMYIETTLVWFYCRCKDYSHAFNVLKYIPLRDVVSW 521
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN 316
+IIS R G +AL+ LR+++ V PN+ T S L AC KL + FV +
Sbjct: 522 TAIISGCARLGLETEALEFLREMMEEGVLPNSYTYSSALKACAKLETPAL---SNVFVNS 578
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
ALI MY +CG I + ++F MP +NLVSW MI Y
Sbjct: 579 ALIYMYAKCGYIADAFQVFDNMPERNLVSWKAMILGYA 616
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 116/244 (47%), Gaps = 23/244 (9%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V+N+LI Y + L + F + +++ V+W A++ GY +E L I+
Sbjct: 187 VDNNLICSYLRLGKLAQARKVFDGMSRRNTVTWTAIIDGYLKYDLDDEAFKLFH--GSIK 244
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----------IHLSTACGFVICS 241
+QPN+ + C + + LGK IH +L+ + ++ + CG + +
Sbjct: 245 HGVQPNSKMFVCFMNLCCKRVDLALGKQIHARILKSNWRNLIVDSAVVNFYSKCGKISSA 304
Query: 242 CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
F++++ RDVV W +II+A + G +AL LL ++V PN TI + L AC +
Sbjct: 305 FRTFDRMAKRDVVCWTTIITACSQHGLGHEALLLLSQMLVDGFFPNEYTICAALKACGEN 364
Query: 302 AALPQGL-----------GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
A G + F+ +LIDMY +CG I S+K+F M +N +W +I
Sbjct: 365 KAFKCGTQLHGAIVKKICKSDVFIGTSLIDMYAKCGEIVSSKKVFDRMKVRNTATWTSII 424
Query: 351 SVYG 354
S Y
Sbjct: 425 SGYA 428
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 80/344 (23%), Positives = 143/344 (41%), Gaps = 59/344 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH--FVCPKVYKACSELKDYRVGKDVYD 89
WT+++ Y +E LF+ I GV+P+ FVC C + D +GK ++
Sbjct: 218 TWTAIIDGYLKYDLDDEAFKLFHGSIKHGVQPNSKMFVC--FMNLCCKRVDLALGKQIHA 275
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
++ + N V +++ + KCG++ S F D
Sbjct: 276 RILKSNWR-NLIVDSAVVNFYSKCGKI---SSAFRTFD---------------------- 309
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
++ ++D+V W ++ + G E LL +M+ PN ++ L AC
Sbjct: 310 -----RMAKRDVVCWTTIITACSQHGLGHEALLLLS--QMLVDGFFPNEYTICAALKACG 362
Query: 210 QVKGVKLGKAIHGYVLRH-----------HIHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ K K G +HG +++ I + CG ++ S VF+++ R+ W S
Sbjct: 363 ENKAFKCGTQLHGAIVKKICKSDVFIGTSLIDMYAKCGEIVSSKKVFDRMKVRNTATWTS 422
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------- 307
IIS + R+G +AL+ R + V N T+V V+ AC + A G
Sbjct: 423 IISGYARNGFGEEALNFFRLMKRKKVYVNKSTLVCVMTACGTIKASLIGREVHAQKIKSV 482
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ T ++ L+ Y RC + + +P +++VSW +IS
Sbjct: 483 ILTNMYIETTLVWFYCRCKDYSHAFNVLKYIPLRDVVSWTAIIS 526
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 140/336 (41%), Gaps = 67/336 (19%)
Query: 4 GIQVHAHLI--VCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
G Q+H ++ +C ++ F+G+ L++++ WTS++ Y
Sbjct: 370 GTQLHGAIVKKICKSDV--FIGTSLIDMYAKCGEIVSSKKVFDRMKVRNTATWTSIISGY 427
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G+ EE +N F LM K V + V AC +K +G++V+
Sbjct: 428 ARNGFGEEALNFFRLMKRKKVYVNKSTLVCVMTACGTIKASLIGREVH------------ 475
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
+I S + M + +L+ FY +C+ + I +D
Sbjct: 476 --------------AQKIKSVILTNM----YIETTLVWFYCRCKDYSHAFNVLKYIPLRD 517
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+VSW A+++G A G E L EM++ + PN+ + S L ACA+++ L
Sbjct: 518 VVSWTAIISGCARLGLETEALEFL--REMMEEGVLPNSYTYSSALKACAKLETPALSNVF 575
Query: 221 HGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280
L I++ CG++ + VF+ + R++V W ++I + R+G AL L+ +
Sbjct: 576 VNSAL---IYMYAKCGYIADAFQVFDNMPERNLVSWKAMILGYARNGHCRKALQLMYRMR 632
Query: 281 VANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN 316
+ + +VL AC G+ +G W+
Sbjct: 633 AEGFVVDDYILTTVLTAC-------GGIDSGDIDWD 661
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 154/353 (43%), Gaps = 53/353 (15%)
Query: 53 FYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIK 112
FY + RP+ F P ++KACS + + G+ ++ +++ + +K + ++
Sbjct: 120 FYGRMVIDARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYAS 179
Query: 113 CGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYA 172
GR+E +F + D + N++ID Y KC L+ + F+++ K++ SWN M+ G A
Sbjct: 180 FGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLA 239
Query: 173 LGGFREEVTNLLDEM-----------------------------EMIQTDMQPNTISLSG 203
GG + L DEM +M + + +P LS
Sbjct: 240 KGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSS 299
Query: 204 VLAACAQVKGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRD 252
VLAAC+ + + G+ +H Y+ R+ I L CG + VF ++ R+
Sbjct: 300 VLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKERE 359
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS 312
+ WN++I G+ DAL+L + +KPN +T+V VL AC + +GL
Sbjct: 360 IFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQ 419
Query: 313 FV------------WNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
+ + ++D+ GR G ++ + MP K N W ++
Sbjct: 420 TMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGA 472
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 136/331 (41%), Gaps = 82/331 (24%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W+SM+ Y G Y+E + +F M + RP F+ V ACS + G+ V+ Y+
Sbjct: 261 SWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYL 320
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ +A + LLD++ KCGR+++ +FEEM
Sbjct: 321 KRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEM------------------------- 355
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
K++++ +WNAM+ G A+ G E+ L +++ + M+PN I+L GVL ACA
Sbjct: 356 -----KEREIFTWNAMIGGLAIHGRAEDALELFSKLQ--EGRMKPNGITLVGVLTACAH- 407
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLST-----RDVVVWNSIISAFVRS 266
GFV +F + ++ + ++ RS
Sbjct: 408 -----------------------AGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRS 444
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPAC--------------LKLAALPQGLGTGS 312
G +A DL+ + +KPN ++L AC + L PQ +G
Sbjct: 445 GLFSEAEDLINSM---PMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQ--NSGR 499
Query: 313 FVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
+V L ++Y + G KI LM + +
Sbjct: 500 YV--LLSNIYAKVGRFDDVSKIRKLMKDRGI 528
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 102/243 (41%), Gaps = 53/243 (21%)
Query: 128 QDFLVNNSLIDFYAKCRY------LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVT 181
QD V+ +L+ YA + LKV FS I ++ WN ++ G +
Sbjct: 63 QDHYVSGALLKCYANPHFSNFDFALKV----FSSIPNPNVFIWNIVIKGCLENNKLFKAI 118
Query: 182 NLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI-----------H 230
M + D +PN + + AC+ + V+ G+ IHG+V++H I H
Sbjct: 119 YFYGRMVI---DARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIH 175
Query: 231 LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
+ + G + + +F + DVV WN++I +++ G + A L + V N+
Sbjct: 176 MYASFGRLEDARKMFYSGES-DVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNI------ 228
Query: 291 IVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
GS WN +I+ + G + +RK+F M ++ +SW+ M+
Sbjct: 229 --------------------GS--WNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMV 266
Query: 351 SVY 353
Y
Sbjct: 267 DGY 269
>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
Length = 989
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 99/393 (25%), Positives = 167/393 (42%), Gaps = 75/393 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G Q+H+++I G+ + LL+++ N W M+ +
Sbjct: 333 GEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGK 392
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
L E +F M KG+ P+ F P + + C+ + +G+ ++ +I F+ N V
Sbjct: 393 LDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYV 452
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L+D++ K G+ L +H + + D+V
Sbjct: 453 CSVLIDMYAKHGK------------------------------LDTAHVILRTLTEDDVV 482
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW A+++GYA E L EM+ +Q + I S ++ACA ++ + G+ IH
Sbjct: 483 SWTALISGYAQHNLFAEA--LKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHA 540
Query: 223 --YVLRHHIHLSTA---------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
YV + LS CG + + F ++ +D + WN +IS F +SG D
Sbjct: 541 QSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCED 600
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALID 320
AL + + A ++ + T S + A +A + QG + V NALI
Sbjct: 601 ALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALIT 660
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
Y +CG+I+ +R+ F MP KN VSWN MI+ Y
Sbjct: 661 FYAKCGSIEDARREFCEMPEKNDVSWNAMITGY 693
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 83/397 (20%), Positives = 171/397 (43%), Gaps = 77/397 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++LG Q+H +I G + ++ S L++++ +WT+++
Sbjct: 431 LDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISG 490
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y + E + F M+++G++ D+ AC+ ++ G+ ++
Sbjct: 491 YAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIH----------- 539
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
SG E D + N+L+ YA+C +K ++ +F KI K
Sbjct: 540 ---------------AQSYVSGYSE----DLSIGNALVSLYARCGRIKEAYLEFEKIDAK 580
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D +SWN +++G+A G+ E+ + +M + ++ + + ++A A + +K GK
Sbjct: 581 DSISWNGLISGFAQSGYCEDALKVFAQMN--RAKLEASFFTFGSAVSAAANIANIKQGKQ 638
Query: 220 IHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH +++ I +S A CG + + F ++ ++ V WN++I+ + + G
Sbjct: 639 IHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGY 698
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WN 316
+A++L + PN VT V VL AC + + +GLG + +
Sbjct: 699 GNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYA 758
Query: 317 ALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
++D+ R G + ++RK MP + W ++S
Sbjct: 759 CVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSA 795
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 158/345 (45%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ ++ GY EE ++LF M G+ P +V V C+++K + VG+ ++
Sbjct: 180 SWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLH--- 236
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
L K G T V N+L+ Y++ +
Sbjct: 237 ----------------ALVFKYGSSLET-----------YVCNALVTLYSRMPNFVSAEK 269
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FSK++ KD VS+N++++G A GF + L +M+ + ++P+ ++++ +L+ACA
Sbjct: 270 VFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMK--RDYLKPDCVTVASLLSACASN 327
Query: 212 KGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ G+ +H YV++ I L C + + +F T +VV+WN ++
Sbjct: 328 GALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVML 387
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTG-- 311
AF + + ++ + R + + + PN T S+L C + AL G + TG
Sbjct: 388 VAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQ 447
Query: 312 --SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+V + LIDMY + G + + I + ++VSW +IS Y
Sbjct: 448 FNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYA 492
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 153/345 (44%), Gaps = 53/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W ++ + +++LF MI++ V P V +ACS +R+G Y
Sbjct: 78 SWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACS---GHRIGIR-YAEQ 133
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + + + P+ ++N LI YAK + +
Sbjct: 134 IHARIICHGLLCSPI-------------------------ISNPLIGLYAKNGLIISARK 168
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + KD VSW AM++G++ G+ EE +L EM + P S VL+ C ++
Sbjct: 169 VFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHT--AGIFPTPYVFSSVLSGCTKI 226
Query: 212 KGVKLGKAIHGYVLRHHIHLST-ACGFVICSCS----------VFNQLSTRDVVVWNSII 260
K +G+ +H V ++ L T C ++ S VF+++ ++D V +NS+I
Sbjct: 227 KLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLI 286
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLG 309
S + G AL+L + +KP+ VT+ S+L AC AL G+
Sbjct: 287 SGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGIS 346
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ V AL+D+Y C I+ + ++F+ +N+V WNVM+ +G
Sbjct: 347 SDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFG 391
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/339 (22%), Positives = 137/339 (40%), Gaps = 66/339 (19%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G+ + + LF M ++PD + AC+ G+ ++ Y+I + V+
Sbjct: 293 GFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVE 352
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
LLDL++ C +K +H F + +++V
Sbjct: 353 GALLDLYVNCSD------------------------------IKTAHEMFLTAQTENVVL 382
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
WN ML + E + +M++ + PN + +L C V + LG+ IH
Sbjct: 383 WNVMLVAFGKLDNLSESFRIFRQMQI--KGLIPNQFTYPSILRTCTSVGALDLGEQIHTQ 440
Query: 224 VLRHHIHLSTACGFVICSCSV-----------------FNQLSTRDVVVWNSIISAFVRS 266
V++ T F + CSV L+ DVV W ++IS + +
Sbjct: 441 VIK------TGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQH 494
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG--LGTGSFV---------W 315
+AL ++++ ++ + + S + AC + AL QG + S+V
Sbjct: 495 NLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIG 554
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
NAL+ +Y RCG I+++ F + K+ +SWN +IS +
Sbjct: 555 NALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFA 593
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 108/241 (44%), Gaps = 25/241 (10%)
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
N L+D Y L F + + + SW+ +++G+ V +L M I+ +
Sbjct: 49 NKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCM--IEEN 106
Query: 194 MQPNTISLSGVLAACAQVK-GVKLGKAIHGYVLRHH-----------IHLSTACGFVICS 241
+ P IS + VL AC+ + G++ + IH ++ H I L G +I +
Sbjct: 107 VSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISA 166
Query: 242 CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
VF+ L T+D V W ++IS F ++G +A+ L ++ A + P SVL C K+
Sbjct: 167 RKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKI 226
Query: 302 A-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
G ++V NAL+ +Y R + K+F M K+ VS+N +I
Sbjct: 227 KLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLI 286
Query: 351 S 351
S
Sbjct: 287 S 287
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 72/166 (43%), Gaps = 14/166 (8%)
Query: 202 SGVLAACAQVKG--VKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
SG L C ++ G +KLG + + + A G + VF + R V W+ I
Sbjct: 23 SGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKI 82
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC------------LKLAALPQG 307
IS F+ LDL +I NV P ++ SVL AC + + G
Sbjct: 83 ISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHG 142
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L + N LI +Y + G I +RK+F + K+ VSW MIS +
Sbjct: 143 LLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGF 188
>gi|302775039|ref|XP_002970936.1| hypothetical protein SELMODRAFT_94326 [Selaginella moellendorffii]
gi|300161647|gb|EFJ28262.1| hypothetical protein SELMODRAFT_94326 [Selaginella moellendorffii]
Length = 632
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 168/346 (48%), Gaps = 36/346 (10%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT ++ Y G++ + LF+ M+ +G+R D F CS+L D G+ V
Sbjct: 25 SWTMILSAYAHNGHFHAALGLFWRMLLEGIRVDSFTLSIAITVCSDLGDLSSGQSVRAVA 84
Query: 92 ISIKFEGNACVKRPLLDLFIK-CGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ + V L++L+ K CG D +V +++ Y + L+ +
Sbjct: 85 VESGLHSDLVVATALVNLYGKSCG-----------FDSGLIVQTAVLTMYGRFGKLEQAK 133
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA- 209
F + ++ +V+W+A++A A G + ME+ ++P+ ++ +LAAC
Sbjct: 134 EVFDAMPERTVVAWSALIAACAQNGCERNAFRIFRLMEL--EGVRPDHVTFVSMLAACGS 191
Query: 210 --QVKGVKLGKAIHGY-----VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISA 262
+ K + A GY + + L CG + + F++++ R++V WNS+I+
Sbjct: 192 LEEAKTIHERIAAAGYESFVMLGNSLVSLYGKCGSIQDARDAFDRITARNIVTWNSMIAT 251
Query: 263 FVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPACLKLAALPQG-------------L 308
+ + G+ + L+L ++ VKPN +T+VS+L AC +AAL +G +
Sbjct: 252 YAQQGRGREVLELYERIMDEKLVKPNVITVVSILDACADMAALERGSEIHATHSSLSQEI 311
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ V +L+++YG+CG + +R +F + +++V+WN MI+ Y
Sbjct: 312 ESDIVVKTSLVNLYGKCGRVASARAVFDKIFARDVVAWNTMIAAYA 357
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 155/334 (46%), Gaps = 61/334 (18%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W++++ G +F LM +GVRPDH + AC L++ K +++ +
Sbjct: 147 WSALIAACAQNGCERNAFRIFRLMELEGVRPDHVTFVSMLAACGSLEE---AKTIHERIA 203
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ +E F+ ++ NSL+ Y KC ++ +
Sbjct: 204 AAGYES-----------FV-------------------MLGNSLVSLYGKCGSIQDARDA 233
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F +I +++V+WN+M+A YA G EV L + + M + ++PN I++ +L ACA +
Sbjct: 234 FDRITARNIVTWNSMIATYAQQGRGREVLELYERI-MDEKLVKPNVITVVSILDACADMA 292
Query: 213 GVKLGKAIHGY-------------VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
++ G IH V ++L CG V + +VF+++ RDVV WN++
Sbjct: 293 ALERGSEIHATHSSLSQEIESDIVVKTSLVNLYGKCGRVASARAVFDKIFARDVVAWNTM 352
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL-----------PACLKLAALPQGL 308
I+A+ + G A++L D+ + V PN + VS+L A +L+++ +
Sbjct: 353 IAAYAQHGHDTQAMELYWDLTLEGVTPNDSSFVSILFSISHGGRRSRDAVSQLSSIREDY 412
Query: 309 GTGSFV---WNALIDMYGRCGAIQKSRKIFVLMP 339
+ ++ L+D R G+++++ ++F MP
Sbjct: 413 TNFTPKVEHYSCLVDTLARAGSLREAEELFFAMP 446
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 118/254 (46%), Gaps = 41/254 (16%)
Query: 140 YAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI 199
Y KC ++ + F IK+ + SW +L+ YA G L M+ ++ ++
Sbjct: 2 YGKCGLVEEAKEVFDGIKRWNEYSWTMILSAYAHNGHFHAALGLF--WRMLLEGIRVDSF 59
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYVLRHHIH----LSTA--------CGF---------- 237
+LS + C+ + + G+++ + +H ++TA CGF
Sbjct: 60 TLSIAITVCSDLGDLSSGQSVRAVAVESGLHSDLVVATALVNLYGKSCGFDSGLIVQTAV 119
Query: 238 ---------VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288
+ + VF+ + R VV W+++I+A ++G +A + R + + V+P+
Sbjct: 120 LTMYGRFGKLEQAKEVFDAMPERTVVAWSALIAACAQNGCERNAFRIFRLMELEGVRPDH 179
Query: 289 VTIVSVLPACLKLAALPQ------GLGTGSFVW--NALIDMYGRCGAIQKSRKIFVLMPH 340
VT VS+L AC L G SFV N+L+ +YG+CG+IQ +R F +
Sbjct: 180 VTFVSMLAACGSLEEAKTIHERIAAAGYESFVMLGNSLVSLYGKCGSIQDARDAFDRITA 239
Query: 341 KNLVSWNVMISVYG 354
+N+V+WN MI+ Y
Sbjct: 240 RNIVTWNSMIATYA 253
>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 850
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 105/391 (26%), Positives = 165/391 (42%), Gaps = 98/391 (25%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-GVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W S++ Y LG + + +F M ++ G RPD V C+ + +GK + +
Sbjct: 195 SWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGF 254
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
++ EM Q+ V N L+D YAK + ++
Sbjct: 255 AVT------------------------------SEMIQNMFVGNCLVDMYAKFGMMDEAN 284
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM----------------------- 187
FS + KD+VSWNAM+AGY+ G E+ L ++M
Sbjct: 285 TVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRG 344
Query: 188 ----------EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS----- 232
+M+ + ++PN ++L VL+ CA V + GK IH Y +++ + L
Sbjct: 345 LGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHG 404
Query: 233 -------------TACGFVICSCSVFNQLST--RDVVVWNSIISAFVRSGQVVDALDLLR 277
C V + ++F+ LS RDVV W +I + + G AL+LL
Sbjct: 405 DENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLS 464
Query: 278 DVIVAN--VKPNTVTIVSVLPACLKLAALPQGLGTGS------------FVWNALIDMYG 323
++ + +PN TI L AC LAAL G + FV N LIDMY
Sbjct: 465 EMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYA 524
Query: 324 RCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+CG I +R +F M KN V+W +++ YG
Sbjct: 525 KCGDIGDARLVFDNMMEKNEVTWTSLMTGYG 555
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 106/426 (24%), Positives = 171/426 (40%), Gaps = 107/426 (25%)
Query: 3 LGIQVHAHLIVCGVEL-CAFLGSQLLEVFC-------NWTSMMGMYNVLGYYEEIVNLFY 54
L + + +HLI + L C LL F +W S++ Y G + ++ F
Sbjct: 57 LTLNLTSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFC 116
Query: 55 LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG 114
LM PD++ P V+KAC E+ R G + F N V L+ ++ +CG
Sbjct: 117 LMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCG 176
Query: 115 RMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYAL 173
+ +F+EM D + NS+I+ YAK K++ FSK+ +
Sbjct: 177 SLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNE-------------- 222
Query: 174 GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----- 228
GFR P+ I+L VL CA V LGK HG+ +
Sbjct: 223 FGFR------------------PDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNM 264
Query: 229 ------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL------ 276
+ + G + + +VF+ + +DVV WN++++ + + G+ DA+ L
Sbjct: 265 FVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEE 324
Query: 277 -----------------------------RDVIVANVKPNTVTIVSVLPACLKLAAL--- 304
R ++ + +KPN VT++SVL C + AL
Sbjct: 325 KIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHG 384
Query: 305 ---------------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIF-VLMP-HKNLVSWN 347
G G + V N LIDMY +C + +R +F L P +++V+W
Sbjct: 385 KEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWT 444
Query: 348 VMISVY 353
VMI Y
Sbjct: 445 VMIGGY 450
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 152/347 (43%), Gaps = 50/347 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W++ + Y G E + + M+ G++P+ V C+ + GK+++ Y
Sbjct: 332 TWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYA 391
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I K P+ DL K G + + +V N LID YAKC+ + ++
Sbjct: 392 I----------KYPM-DLR-KNGHGD-----------ENMVINQLIDMYAKCKKVDIARA 428
Query: 152 KFSKI--KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + K++D+V+W M+ GY+ G + LL EM +PN ++S L ACA
Sbjct: 429 MFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACA 488
Query: 210 QVKGVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWN 257
+ + +GK IH Y LR+ I + CG + + VF+ + ++ V W
Sbjct: 489 SLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWT 548
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL--------- 308
S+++ + G +AL + ++ K + VT++ VL AC + QG+
Sbjct: 549 SLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTD 608
Query: 309 ---GTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMIS 351
G + L+D+ GR G + + ++ MP V W ++S
Sbjct: 609 FGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLS 655
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 78/194 (40%), Gaps = 24/194 (12%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY--- 88
WTS+M Y + GY EE + +F M G + D V ACS G + +
Sbjct: 546 TWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRM 605
Query: 89 --DYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQD-----FLVNNSLIDFYA 141
D+ +S E AC L+DL + GR+ L EEM + ++ S +
Sbjct: 606 KTDFGVSPGPEHYAC----LVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHG 661
Query: 142 KCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISL 201
K + + K +++ + S+ + YA G ++VT + M +P
Sbjct: 662 KVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRP----- 716
Query: 202 SGVLAACAQVKGVK 215
C+ V+G+K
Sbjct: 717 -----GCSWVEGIK 725
>gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g53360, mitochondrial; Flags: Precursor
gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana]
gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 768
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 169/349 (48%), Gaps = 60/349 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGV-RPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W+S++ ++ LG+ E ++ M+ GV P+ ++ KACS L G ++
Sbjct: 236 SWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGL 295
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
I + GNA + SL D YA+C +L +
Sbjct: 296 CIKSELAGNA------------------------------IAGCSLCDMYARCGFLNSAR 325
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F +I++ D SWN ++AG A G+ +E ++ +M + P+ ISL +L CAQ
Sbjct: 326 RVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMR--SSGFIPDAISLRSLL--CAQ 381
Query: 211 VKGVKL--GKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQL-STRDVVVW 256
K + L G IH Y+++ + + T C + C ++F + D V W
Sbjct: 382 TKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSW 441
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP----------- 305
N+I++A ++ Q V+ L L + ++V+ +P+ +T+ ++L C+++++L
Sbjct: 442 NTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLK 501
Query: 306 QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
GL F+ N LIDMY +CG++ ++R+IF M ++++VSW+ +I Y
Sbjct: 502 TGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYA 550
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 119/247 (48%), Gaps = 27/247 (10%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D ++NN ++ Y KC L+ + F + +++LVS+ +++ GY+ G E L ++
Sbjct: 101 DTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLY--LK 158
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV--LRHHIHLSTACGFVICSCSVFN 246
M+Q D+ P+ + ++ ACA V LGK +H V L HL A +I FN
Sbjct: 159 MLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHL-IAQNALIAMYVRFN 217
Query: 247 QLST----------RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV-KPNTVTIVSVL 295
Q+S +D++ W+SII+ F + G +AL L++++ V PN S L
Sbjct: 218 QMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSL 277
Query: 296 PACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLV 344
AC L G L + +L DMY RCG + +R++F + +
Sbjct: 278 KACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTA 337
Query: 345 SWNVMIS 351
SWNV+I+
Sbjct: 338 SWNVIIA 344
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 148/344 (43%), Gaps = 54/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
++TS++ Y+ G E + L+ M+ + + PD F + KAC+ D +GK ++ +
Sbjct: 135 SYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQV 194
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I ++E +S L + N+LI Y + + +
Sbjct: 195 I----------------------KLESSSHL--------IAQNALIAMYVRFNQMSDASR 224
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F I KDL+SW++++AG++ GF E + L EM PN L AC+ +
Sbjct: 225 VFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGV-FHPNEYIFGSSLKACSSL 283
Query: 212 KGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
G IHG ++ + + CGF+ + VF+Q+ D WN II
Sbjct: 284 LRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVII 343
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV--W--- 315
+ +G +A+ + + + P+ +++ S+L A K AL QG+ S++ W
Sbjct: 344 AGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFL 403
Query: 316 ------NALIDMYGRCGAIQKSRKIFV-LMPHKNLVSWNVMISV 352
N+L+ MY C + +F + + VSWN +++
Sbjct: 404 ADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTA 447
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 145/346 (41%), Gaps = 57/346 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W ++ GY +E V++F M G PD + A ++ G ++ Y+
Sbjct: 338 SWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYI 397
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I F + V LL ++ C + LFE DF N
Sbjct: 398 IKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFE----DFRNN------------------ 435
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME-MIQTDMQPNTISLSGVLAACAQ 210
D VSWN +L E+ +L + M+ ++ +P+ I++ +L C +
Sbjct: 436 -------ADSVSWNTILTACLQ---HEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVE 485
Query: 211 VKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ +KLG +H Y L+ I + CG + + +F+ + RDVV W+++
Sbjct: 486 ISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTL 545
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC---------LKLAALPQ---G 307
I + +SG +AL L +++ A ++PN VT V VL AC LKL A Q G
Sbjct: 546 IVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHG 605
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ + ++D+ R G + ++ + M ++V W ++S
Sbjct: 606 ISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSA 651
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 99/238 (41%), Gaps = 51/238 (21%)
Query: 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL 107
E++ LF LM+ PDH + + C E+ ++G V+ Y
Sbjct: 456 EMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCY----------------- 498
Query: 108 DLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAM 167
+ +GL E + N LID YAKC L + F + +D+VSW+ +
Sbjct: 499 ---------SLKTGLAPEQ----FIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTL 545
Query: 168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH 227
+ GYA GF EE L EM+ ++PN ++ GVL AC+ V V+ G ++ +
Sbjct: 546 IVGYAQSGFGEEALILFKEMK--SAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTE 603
Query: 228 HIHLSTACGFVICSCSV--------FNQLS--------TRDVVVWNSIISAFVRSGQV 269
H T CSC V N+ DVVVW +++SA G V
Sbjct: 604 HGISPTK---EHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNV 658
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 86/174 (49%), Gaps = 22/174 (12%)
Query: 203 GVLAACAQVKGVKLGKAIHGYVL-----------RHHIHLSTACGFVICSCSVFNQLSTR 251
++ AC+ + + G+ IH ++L H + + CG + + VF+ + R
Sbjct: 72 SLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPER 131
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---- 307
++V + S+I+ + ++GQ +A+ L ++ ++ P+ S++ AC + + G
Sbjct: 132 NLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLH 191
Query: 308 -----LGTGSFV--WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L + S + NALI MY R + + ++F +P K+L+SW+ +I+ +
Sbjct: 192 AQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFS 245
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 74/145 (51%), Gaps = 18/145 (12%)
Query: 224 VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG---QVVDALDLLRDVI 280
+LR +S + ++ + SV + + T +++ N I++ +S + ++A D +
Sbjct: 4 MLRLGARVSVSNSQILATSSVVSTIKTEELM--NDHINSLCKSNFYREALEAFDFAQKN- 60
Query: 281 VANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA-----------LIDMYGRCGAIQ 329
++ K T +S++ AC +L QG + N+ ++ MYG+CG+++
Sbjct: 61 -SSFKIRLRTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLR 119
Query: 330 KSRKIFVLMPHKNLVSWNVMISVYG 354
+R++F MP +NLVS+ +I+ Y
Sbjct: 120 DAREVFDFMPERNLVSYTSVITGYS 144
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 30/152 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++LG QVH + + G+ F+ + L++++ +W++++
Sbjct: 489 LKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVG 548
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM-----ISI 94
Y G+ EE + LF M G+ P+H V ACS + G +Y M IS
Sbjct: 549 YAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISP 608
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126
E +CV +DL + GR+ +EM
Sbjct: 609 TKEHCSCV----VDLLARAGRLNEAERFIDEM 636
>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 818
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/349 (26%), Positives = 158/349 (45%), Gaps = 63/349 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+++ Y G+ + + L M + G +PD + A +++K R+G+ ++ Y
Sbjct: 213 SWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYA 272
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
FE V LLD++ KCG I +F+ M
Sbjct: 273 FRSGFESLVNVTNALLDMYFKCGSARIARLVFKGM------------------------- 307
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEV----TNLLDEMEMIQTDMQPNTISLSGVLAA 207
+ K +VSWN M+ G A G EE +LDE E+ P +++ GVL A
Sbjct: 308 -----RSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEV------PTRVTMMGVLLA 356
Query: 208 CAQVKGVKLGKAIHGY-----------VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVW 256
CA + ++ G +H V+ I + + C V + S+FN L + V W
Sbjct: 357 CANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTN-VTW 415
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG--------- 307
N++I + ++G V +AL+L + +K + T+V V+ A + Q
Sbjct: 416 NAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVR 475
Query: 308 --LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ FV AL+DMY +CGAI+ +RK+F +M +++++WN MI YG
Sbjct: 476 ACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYG 524
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 139/302 (46%), Gaps = 55/302 (18%)
Query: 75 CSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNN 134
C E D + G++++ +I+ FE N V ++ L+ KC +++ +FE M
Sbjct: 155 CGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERM-------- 206
Query: 135 SLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDM 194
+ KDLVSW ++AGYA G + L+ ++M +
Sbjct: 207 ----------------------QHKDLVSWTTLVAGYAQNGHAKRALQLV--LQMQEAGQ 242
Query: 195 QPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----IHLSTA-------CGFVICSCS 243
+P++++L +L A A +K +++G++IHGY R ++++ A CG +
Sbjct: 243 KPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARL 302
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
VF + ++ VV WN++I ++G+ +A ++ P VT++ VL AC L
Sbjct: 303 VFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGD 362
Query: 304 LPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
L +G L + V N+LI MY +C + + IF + N V+WN MI
Sbjct: 363 LERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTN-VTWNAMILG 421
Query: 353 YG 354
Y
Sbjct: 422 YA 423
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 147/337 (43%), Gaps = 56/337 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ G EE F M+D+G P V AC+ L D G V+ +
Sbjct: 314 SWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLL 373
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+K + N V NSLI Y+KC+ + ++
Sbjct: 374 DKLKLDSNVSVM------------------------------NSLISMYSKCKRVDIAAS 403
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ +++ + V+WNAM+ GYA G +E NL M+ ++ + +L GV+ A A
Sbjct: 404 IFNNLEKTN-VTWNAMILGYAQNGCVKEALNLFCMMQ--SQGIKLDCFTLVGVITALADF 460
Query: 212 KGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ K IHG +R +++ +STA CG + + +F+ + R V+ WN++I
Sbjct: 461 SVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMI 520
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
+ G + LDL ++ VKPN +T +SV+ AC + +GL +
Sbjct: 521 DGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYL 580
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
++A++D+ GR G + + MP K +S
Sbjct: 581 EPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGIS 617
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 108/225 (48%), Gaps = 34/225 (15%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREE-----VTNLLDEMEMIQTDMQPNTISLSGVLAA 207
F ++ K V ++ ML GYA + + + DE+ ++ D + +L
Sbjct: 102 FEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGD-------YACLLQL 154
Query: 208 CAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVW 256
C + +K G+ IHG +V+ + L C + + +F ++ +D+V W
Sbjct: 155 CGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSW 214
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF--- 313
++++ + ++G AL L+ + A KP++VT+VS+LPA + AL G +
Sbjct: 215 TTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFR 274
Query: 314 --------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
V NAL+DMY +CG+ + +R +F M K +VSWN MI
Sbjct: 275 SGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMI 319
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/283 (20%), Positives = 123/283 (43%), Gaps = 54/283 (19%)
Query: 16 VELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKAC 75
V++ A + + L + W +M+ Y G +E +NLF +M +G++ D F V A
Sbjct: 398 VDIAASIFNNLEKTNVTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITAL 457
Query: 76 SELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNS 135
++ R K ++ + + N V L+D++ KCG ++ LF+ M
Sbjct: 458 ADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMM--------- 508
Query: 136 LIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ 195
+++ +++WNAM+ GY G +E +L +EM+ + ++
Sbjct: 509 ---------------------QERHVITWNAMIDGYGTHGVGKETLDLFNEMQ--KGAVK 545
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVV 255
PN I+ V++AC+ V+ G + + + T +
Sbjct: 546 PNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPT-------------------MDH 586
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+++++ R+GQ+ DA + ++++ +KP + ++L AC
Sbjct: 587 YSAMVDLLGRAGQLDDAWNFIQEM---PIKPGISVLGAMLGAC 626
>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g49170, chloroplastic-like [Cucumis sativus]
Length = 849
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 170/352 (48%), Gaps = 62/352 (17%)
Query: 32 NWTSMMGMY--NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
+W++M+ + N +G+ + F MI+ G P+ + +ACS + VG ++
Sbjct: 135 SWSAMVSCFANNNMGFRALLT--FVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFG 192
Query: 90 YMISIKF-EGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKV 148
++I + + + CV L+D+F+K GR ++ S KV
Sbjct: 193 FVIKTGYLQSDVCVGCGLIDMFVK-GRGDLVSAF------------------------KV 227
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
F K+ +++ V+W M+ G+ E +L ++MI + +P+ +LSGV++AC
Sbjct: 228 ----FEKMPERNAVTWTLMITRLMQFGYAGEAIDLF--LDMIFSGYEPDRFTLSGVISAC 281
Query: 209 AQVKGVKLGKAIHGYVLRHHIHLSTACG------FVICSCS--------VFNQLSTRDVV 254
A ++ + LG+ +H +RH + L G + CS +F+Q+ +V
Sbjct: 282 ANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVF 341
Query: 255 VWNSIISAFVRSGQV-VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------ 307
W ++I+ +V+ G +ALDL R +I+ +V PN T S L AC LAAL G
Sbjct: 342 SWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTH 401
Query: 308 ---LGTGSF--VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
LG S V N+LI MY R G I +RK F ++ KNL+S+N +I Y
Sbjct: 402 AVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYA 453
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 149/334 (44%), Gaps = 56/334 (16%)
Query: 32 NWTSMM-GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+WT+M+ G GY EE ++LF MI V P+HF KAC+ L R+G+ V+ +
Sbjct: 342 SWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTH 401
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ + F CV NSLI YA+ + +
Sbjct: 402 AVKLGFSSVNCVA------------------------------NSLISMYARSGRIDDAR 431
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + +K+L+S+N ++ YA EE L +E+E M + + + +L+ A
Sbjct: 432 KAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIE--DQGMGASAFTFASLLSGAAS 489
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ + G+ IH V++ + L+ + CG + + VF + R+V+ W SI
Sbjct: 490 IGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSI 549
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA-- 317
I+ F + G AL+L ++ V+PN VT ++VL AC + + +G ++
Sbjct: 550 ITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHG 609
Query: 318 ----------LIDMYGRCGAIQKSRKIFVLMPHK 341
++D+ GR G++ ++ + MP+K
Sbjct: 610 VIPRMEHYACIVDILGRSGSLSEAIQFINSMPYK 643
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 84/346 (24%), Positives = 153/346 (44%), Gaps = 52/346 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WT M+ GY E ++LF MI G PD F V AC+ ++ +G+ ++
Sbjct: 238 TWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQA 297
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + CV L++++ KC V+ S+ C K+
Sbjct: 298 IRHGLTLDRCVGCCLINMYAKCS-----------------VDGSM------CAARKI--- 331
Query: 152 KFSKIKQKDLVSWNAMLAGYAL-GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F +I ++ SW AM+ GY GG+ EE +L MI T + PN + S L ACA
Sbjct: 332 -FDQILDHNVFSWTAMITGYVQKGGYDEEALDLF--RGMILTHVIPNHFTFSSTLKACAN 388
Query: 211 VKGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ +++G+ + + ++ I + G + + F+ L ++++ +N++
Sbjct: 389 LAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTV 448
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GL 308
I A+ ++ +AL+L ++ + + T S+L + + + GL
Sbjct: 449 IDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGL 508
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V NALI MY RCG I+ + ++F M +N++SW +I+ +
Sbjct: 509 KLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFA 554
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/339 (23%), Positives = 144/339 (42%), Gaps = 62/339 (18%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G + ++ M+ +G PD K C + + +G V++ + + ++
Sbjct: 45 GRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTL 104
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
L+ L+ KCG+ E + +F M +DL+S
Sbjct: 105 NSLISLYSKCGQWEKATSIFRLMGS-----------------------------SRDLIS 135
Query: 164 WNAMLAGYALG--GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
W+AM++ +A GFR LL ++MI+ PN + AC+ + V +G +I
Sbjct: 136 WSAMVSCFANNNMGFRA----LLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIF 191
Query: 222 GYVLRHHIHLSTAC-------------GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
G+V++ S C G ++ + VF ++ R+ V W +I+ ++ G
Sbjct: 192 GFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGY 251
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQGLGTGSFVWNA 317
+A+DL D+I + +P+ T+ V+ AC L A+ GL V
Sbjct: 252 AGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCC 311
Query: 318 LIDMYGRC---GAIQKSRKIFVLMPHKNLVSWNVMISVY 353
LI+MY +C G++ +RKIF + N+ SW MI+ Y
Sbjct: 312 LINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGY 350
>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 161/346 (46%), Gaps = 26/346 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT ++ +Y + ++F + G+RPD F AC KD G+ V+ +
Sbjct: 70 SWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHGMV 129
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSH 150
+ + V L+D++ + G +E+ +F+ M+ +D SL++ + KC ++ +
Sbjct: 130 FRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAAR 189
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ ++ VSW AM+ GY G L EM D P I++ VL+ CA
Sbjct: 190 RIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDW-PTVITIVAVLSGCAD 248
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ LG ++HGYV + ++ L G ++ + +F ++ RDV W ++
Sbjct: 249 IGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTTM 308
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----- 314
IS G+ AL+ D+ + V PN VT++SVL AC + +G +
Sbjct: 309 ISGLALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHG 368
Query: 315 -------WNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
+ ++D+ GR G +++++++ MP K + V W ++S
Sbjct: 369 IKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSA 414
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/306 (23%), Positives = 126/306 (41%), Gaps = 67/306 (21%)
Query: 109 LFIKCGRME---------ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
L KCG +E +T GL Q L++ Y + + F+ I+
Sbjct: 9 LLQKCGSLEKLKQIHGKAVTLGLLCSKRQHLACK--LLNTYTQLGSPVDAQKVFNHIQNP 66
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSW +++ Y + ++ + + ++P++ + G ++AC K + G+
Sbjct: 67 DIVSWTCLISLYLHTSQPCKAFSIFS--HLFHSGLRPDSFCVVGAVSACGHRKDLSNGRI 124
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVR--- 265
+HG V R I + + G + +CSVF + +DV W S+++ F++
Sbjct: 125 VHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCND 184
Query: 266 ---------------------------SGQV-VDALDLLRDVIVANVK-PNTVTIVSVLP 296
G+V + L+L +++ P +TIV+VL
Sbjct: 185 IEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLS 244
Query: 297 ACLKLAALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
C + A G + V NAL+DMY + GA+ + KIF MP +++ S
Sbjct: 245 GCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFS 304
Query: 346 WNVMIS 351
W MIS
Sbjct: 305 WTTMIS 310
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 86/209 (41%), Gaps = 52/209 (24%)
Query: 197 NTISLSGVLAACAQVKGVKL--GKAIH-GYVLRHHIHLS-------TACGFVICSCSVFN 246
NT + +L C ++ +K GKA+ G + HL+ T G + + VFN
Sbjct: 2 NTQTFYFLLQKCGSLEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFN 61
Query: 247 QLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ 306
+ D+V W +IS ++ + Q A + + + ++P++ +V + AC L
Sbjct: 62 HIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSN 121
Query: 307 G-----------LGTGSFVWNALIDMYGRCGA---------------------------- 327
G LG+ V NALIDMY R GA
Sbjct: 122 GRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIK 181
Query: 328 ---IQKSRKIFVLMPHKNLVSWNVMISVY 353
I+ +R+IF MP +N VSW MI+ Y
Sbjct: 182 CNDIEAARRIFDEMPMRNSVSWTAMITGY 210
>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Vitis vinifera]
Length = 881
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/350 (26%), Positives = 161/350 (46%), Gaps = 59/350 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
W +++ Y +E+ +++F +I +PD+F P V KAC+ L D +G
Sbjct: 67 QWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLG------ 120
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD--QDFLVNNSLIDFYAKCRYLKV 148
+I G+ +MD D V N+LI Y KC ++
Sbjct: 121 --------------------------QIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEE 154
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
+ F + +++LVSWN+++ G++ GF +E N EM + + P+ +L VL C
Sbjct: 155 AVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVC 214
Query: 209 AQVKGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWN 257
A + ++ G A+HG ++ I + + C F+ + +F++ +++V WN
Sbjct: 215 AGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWN 274
Query: 258 SIISAFVRSGQVVDALDLLRDVIV--ANVKPNTVTIVSVLPACLKLAALP---------- 305
S+I + R V LL+ + A +K + TI++VLP CL+ + L
Sbjct: 275 SMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSW 334
Query: 306 -QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
GL + V NA I Y RCGA+ S ++F LM K + SWN ++ Y
Sbjct: 335 RHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYA 384
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 159/350 (45%), Gaps = 62/350 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMI-----DKGVRPDHFVCPKVYKACSELKDYRVGKD 86
+W SM+G Y E++ FYL+ D ++ D F V C E + + K+
Sbjct: 272 SWNSMIGGY---AREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKE 328
Query: 87 VYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL 146
++ Y + N LV N+ I Y +C L
Sbjct: 329 LHGYSWRHGLQSNE------------------------------LVANAFIAAYTRCGAL 358
Query: 147 KVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
S F + K + SWNA+L GYA + +L ++M + + P+ ++ +L
Sbjct: 359 CSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLY--LQMTDSGLDPDWFTIGSLLL 416
Query: 207 ACAQVKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVV 255
AC+++K + G+ IHG+ LR+ + L CG + +F+ + R +V
Sbjct: 417 ACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVS 476
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------- 307
WN +I+ + ++G +A++L R ++ ++P + I+ V AC +L+AL G
Sbjct: 477 WNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFAL 536
Query: 308 ---LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L FV +++IDMY + G I S++IF + K++ SWNV+I+ YG
Sbjct: 537 KAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYG 586
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 145/331 (43%), Gaps = 55/331 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ Y + ++L+ M D G+ PD F + ACS +K G++++ +
Sbjct: 375 SWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFA 434
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + + LL L+I CG+ LF+ M+
Sbjct: 435 LRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEH----------------------- 471
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+ LVSWN M+AGY+ G +E NL +M+ +QP I++ V AC+Q+
Sbjct: 472 -------RSLVSWNVMIAGYSQNGLPDEAINLF--RQMLSDGIQPYEIAIMCVCGACSQL 522
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++LGK +H + L+ H I + G + S +F++L +DV WN II
Sbjct: 523 SALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVII 582
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN---- 316
+ + G+ +AL+L ++ +KP+ T +L AC + GL + + N
Sbjct: 583 AGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNI 642
Query: 317 --------ALIDMYGRCGAIQKSRKIFVLMP 339
++DM GR G I + ++ MP
Sbjct: 643 EPKLEHYTCVVDMLGRAGRIDDALRLIEEMP 673
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/321 (23%), Positives = 141/321 (43%), Gaps = 60/321 (18%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLE--VFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKG 60
+GI + + I CG A + +E +W M+ Y+ G +E +NLF M+ G
Sbjct: 445 IGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDG 504
Query: 61 VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITS 120
++P V ACS+L R+GK+++ +
Sbjct: 505 IQPYEIAIMCVCGACSQLSALRLGKELHCF------------------------------ 534
Query: 121 GLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEV 180
L + +D V++S+ID YAK + +S F ++++KD+ SWN ++AGY + G +E
Sbjct: 535 ALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEA 594
Query: 181 TNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVIC 240
L + +M++ ++P+ + +G+L AC+ V+ G +L H ++ C
Sbjct: 595 LELFE--KMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLH-NIEPKLEHYTC 651
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
++ R+G++ DAL L+ ++ P++ S+L +C
Sbjct: 652 ------------------VVDMLGRAGRIDDALRLIEEM---PGDPDSRIWSSLLSSC-- 688
Query: 301 LAALPQGLGTGSFVWNALIDM 321
+ LG G V N L+++
Sbjct: 689 --RIHGNLGLGEKVANKLLEL 707
>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
Length = 745
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/357 (23%), Positives = 162/357 (45%), Gaps = 61/357 (17%)
Query: 25 QLLEVFCN-----WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK 79
+L EV + WT+M+ + G E + +F M +G+ D + + AC L
Sbjct: 227 RLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALS 286
Query: 80 DYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDF 139
GK ++ Y+I ++ D + V ++L+D
Sbjct: 287 ALEQGKQIHAYIIRTRY------------------------------DDNVFVGSALVDM 316
Query: 140 YAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI 199
Y+KCR +K++ F ++ K+++SW A++ GY G EE + EM+ + + P+
Sbjct: 317 YSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQ--RDGIDPDDY 374
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQL 248
+L V+++CA + ++ G H L H+I +S A CG + + +F+++
Sbjct: 375 TLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEM 434
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
S D V W +++S + + G+ + +DL ++ VKP+ VT + VL AC + + +G
Sbjct: 435 SFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGR 494
Query: 309 GTGSFV------------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ + +ID+Y R G ++++ + MP H + + W ++S
Sbjct: 495 SYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSA 551
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/377 (22%), Positives = 179/377 (47%), Gaps = 30/377 (7%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFY--LMIDKG 60
L HA L+ ++ A S ++ +++ ++ G + + V ++ L D
Sbjct: 79 LSTLAHARLLS---DMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSS 135
Query: 61 VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITS 120
VRP + A S L D +GK + ++ + F NA V PL+D++ K +
Sbjct: 136 VRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAK 195
Query: 121 GLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREE 179
F+E+D ++ ++ N++I +C+ ++ + F + +D ++W M+ G+ G E
Sbjct: 196 RAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESE 255
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----------- 228
+ M + + + +L AC + ++ GK IH Y++R
Sbjct: 256 ALEIFRRMRF--QGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSAL 313
Query: 229 IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288
+ + + C + + +VF +++ ++++ W ++I + ++G +A+ + ++ + P+
Sbjct: 314 VDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDD 373
Query: 289 VTIVSVLPACLKLAALPQG-------LGTGSF----VWNALIDMYGRCGAIQKSRKIFVL 337
T+ SV+ +C LA+L +G L +G V NAL+ +YG+CG+I+ + ++F
Sbjct: 374 YTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDE 433
Query: 338 MPHKNLVSWNVMISVYG 354
M + VSW ++S Y
Sbjct: 434 MSFHDQVSWTALVSGYA 450
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 131/303 (43%), Gaps = 54/303 (17%)
Query: 106 LLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
LL + K GR +F+ M + N+L+ A R L F+ + Q+D+VS+
Sbjct: 47 LLTAYGKAGRHARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSY 106
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
NA++AG++ GG + + + + ++P+ I++S ++ A + + LGK H +
Sbjct: 107 NAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQFHCQI 166
Query: 225 LRHHIHLST------------------------------------------ACGFVICSC 242
LR + C V +
Sbjct: 167 LRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEAR 226
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
+F ++ RD + W ++++ F ++G +AL++ R + + + T S+L AC L+
Sbjct: 227 RLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALS 286
Query: 303 ALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
AL QG FV +AL+DMY +C +I+ + +F M KN++SW +I
Sbjct: 287 ALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIV 346
Query: 352 VYG 354
YG
Sbjct: 347 GYG 349
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/319 (21%), Positives = 132/319 (41%), Gaps = 75/319 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q+HA++I + F+GS L++++ +WT+++
Sbjct: 288 LEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVG 347
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G EE V +F M G+ PD + V +C+ L G + +
Sbjct: 348 YGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHY 407
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V L+ L+ KCG +E LF+EM F+
Sbjct: 408 ITVSNALVTLYGKCGSIEDAHRLFDEM-----------SFH------------------- 437
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D VSW A+++GYA G +E +L + +M+ ++P+ ++ GVL+AC++ V+ G++
Sbjct: 438 DQVSWTALVSGYAQFGRAKETIDLFE--KMLAKGVKPDGVTFIGVLSACSRAGFVEKGRS 495
Query: 220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
+ + H G V + +I + RSG++ +A + ++ +
Sbjct: 496 YFHSMQKDH-------GIVPIDDH------------YTCMIDLYSRSGKLKEAEEFIKQM 536
Query: 280 IVANVKPNTVTIVSVLPAC 298
+ P+ + ++L AC
Sbjct: 537 ---PMHPDAIGWGTLLSAC 552
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 298 CLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
C+ L LP T ++ N L+ YG+ G ++R++F MPH NL ++N ++S
Sbjct: 29 CVILRTLPHPPPT--YLLNHLLTAYGKAGRHARARRVFDAMPHPNLFTYNALLST 81
>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Vitis vinifera]
Length = 755
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 110/397 (27%), Positives = 183/397 (46%), Gaps = 77/397 (19%)
Query: 3 LGIQVHAHLIVC--GVELCA-------FLGSQL----LEVFC--------NWTSMMGMYN 41
LG Q+HAH++ G + A + S L L+VF +W SM+ ++
Sbjct: 182 LGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFS 241
Query: 42 VLGYYEEIVNLFYLMIDKGVR-PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
LGY E + F M+ +GV P+ F+ V+ ACS L G+ ++ +SIKF
Sbjct: 242 QLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHG--MSIKFG--- 296
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
+ +D SL D YAKC L + F +I + D
Sbjct: 297 -------------------------LGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPD 331
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
LV+WNA++AG+A GG +E +M + P+ I++ +L AC + G +
Sbjct: 332 LVAWNAIIAGFAYGGDAKEAIAFFSQMR--HQGLIPDEITVRSLLCACTSPSELYQGMQV 389
Query: 221 HGYVLRHHIHLSTA-CGFVI---CSCS-------VFNQLS-TRDVVVWNSIISAFVRSGQ 268
HGY+ + + L C ++ CS F ++ D+V WN+I++A +R Q
Sbjct: 390 HGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMRHDQ 449
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNA 317
+ LL+ + ++ +P+ +T+ +VL A + AL GL + V N
Sbjct: 450 AEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDTSVTNG 509
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
LID+Y +CG+++ + KIF M + ++VSW+ +I Y
Sbjct: 510 LIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYA 546
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 152/344 (44%), Gaps = 54/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTS++ Y+ G + ++ M+ GV PD F + KACS L D +G+ ++ ++
Sbjct: 131 SWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHV 190
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ +F + + N+LI Y K + +
Sbjct: 191 LKSEFGAH------------------------------IIAQNALISMYTKSNLIIDALD 220
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS++ +DL+SW +M+AG++ G+ E EM + Q PN V +AC+ +
Sbjct: 221 VFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEM-LHQGVYLPNEFIFGSVFSACSSL 279
Query: 212 KGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ G+ +HG ++ + + CG + C+ VF Q+ D+V WN+II
Sbjct: 280 LQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAII 339
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------- 313
+ F G +A+ + + P+ +T+ S+L AC + L QG+ +
Sbjct: 340 AGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHGYINKMGLD 399
Query: 314 ----VWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
V N L+ MY +C ++ + F M + +LVSWN +++
Sbjct: 400 LDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTA 443
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 145/305 (47%), Gaps = 57/305 (18%)
Query: 74 ACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN 133
ACS L+ GK ++D+M+ K P D +
Sbjct: 72 ACSYLRSLEHGKKIHDHMLKSK-------SHP-----------------------DLTLQ 101
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD-EMEMIQT 192
N +++ Y KC+ LK + F + ++++VSW +++AGY+ G + N L+ +M+Q+
Sbjct: 102 NHILNMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQNG---QGGNALEFYFQMLQS 158
Query: 193 DMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICS 241
+ P+ + ++ AC+ + + LG+ +H +VL+ I + T +I +
Sbjct: 159 GVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDA 218
Query: 242 CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK-PNTVTIVSVLPACLK 300
VF++++TRD++ W S+I+ F + G ++AL ++++ V PN SV AC
Sbjct: 219 LDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSS 278
Query: 301 L-----------AALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L ++ GLG F +L DMY +CG + +R +F + +LV+WN +
Sbjct: 279 LLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAI 338
Query: 350 ISVYG 354
I+ +
Sbjct: 339 IAGFA 343
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 85/339 (25%), Positives = 143/339 (42%), Gaps = 65/339 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMY 40
E G Q+H I G+ F G L +++ W +++ +
Sbjct: 283 EYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGF 342
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G +E + F M +G+ PD + AC+ + G V+ Y+ +
Sbjct: 343 AYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHGYINKMG----- 397
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK-QK 159
+D D V N+L+ YAKC L+ + F +++
Sbjct: 398 -------------------------LDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNA 432
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
DLVSWNA+L EEV LL M + Q +P+ I+L+ VL A A+ +++G
Sbjct: 433 DLVSWNAILTACMRHDQAEEVFRLLKLMCISQ--HRPDYITLTNVLGASAETVSIEIGNQ 490
Query: 220 IHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H Y L+ ++ T+ CG + + +F+ + DVV W+S+I + + G
Sbjct: 491 VHCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGY 550
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
+AL L + + +VKPN VT V VL AC + + +G
Sbjct: 551 GEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEG 589
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 125/304 (41%), Gaps = 73/304 (24%)
Query: 4 GIQVHAHLIVCGVEL--------------CAFLGSQLL---EVFCN-----WTSMMGMYN 41
G+QVH ++ G++L C+ L + E+ CN W +++
Sbjct: 386 GMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACM 445
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
EE+ L LM RPD+ V A +E +G V+ Y +
Sbjct: 446 RHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYAL--------- 496
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
K G ++ D V N LID YAKC LK +H F + D+
Sbjct: 497 ----------KTG-----------LNCDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDV 535
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSW++++ GYA G+ EE L M + D++PN ++ GVL AC+ V V+ G ++
Sbjct: 536 VSWSSLILGYAQFGYGEEALKLFKTMRRL--DVKPNHVTFVGVLTACSHVGLVEEGWKLY 593
Query: 222 GYVLRHHIHLSTACGFVICSCSV---------------FNQLS-TRDVVVWNSIISAFVR 265
G + + A CSC V +Q++ D+VVW ++++A
Sbjct: 594 GTMEK---EFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQMAFDPDIVVWKTLLAACKT 650
Query: 266 SGQV 269
G V
Sbjct: 651 HGNV 654
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 85/172 (49%), Gaps = 22/172 (12%)
Query: 204 VLAACAQVKGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRD 252
+++AC+ ++ ++ GK IH ++L+ H +++ C + + VF+ + R+
Sbjct: 69 LISACSYLRSLEHGKKIHDHMLKSKSHPDLTLQNHILNMYGKCKSLKDAQKVFDAMPERN 128
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----- 307
VV W S+I+ + ++GQ +AL+ ++ + V P+ T S++ AC L + G
Sbjct: 129 VVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHA 188
Query: 308 ------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G NALI MY + I + +F M ++L+SW MI+ +
Sbjct: 189 HVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGF 240
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 35/172 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E+G QVH + + G+ + + L++++ +W+S++
Sbjct: 485 IEIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILG 544
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM-----ISI 94
Y GY EE + LF M V+P+H V ACS + G +Y M I+
Sbjct: 545 YAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAP 604
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEM--DQDFLVNNSLIDFYAKCR 144
E +C ++DL + G + G +M D D +V +L+ A C+
Sbjct: 605 TREHCSC----MVDLLARAGCLNEAEGFIHQMAFDPDIVVWKTLL---AACK 649
>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like, partial [Vitis vinifera]
Length = 621
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 152/322 (47%), Gaps = 24/322 (7%)
Query: 56 MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR 115
++D RP + + C +L+ G V+ + + F + +LD++IKC
Sbjct: 80 ILDHVDRPSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGFVPGVVISNRILDMYIKCNS 139
Query: 116 MEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALG 174
+ LF+EM ++D N +I YAK L+ + F ++ ++D SW AM +GY
Sbjct: 140 LVNAKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRH 199
Query: 175 GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST- 233
EE L M+ + + N ++S LAA A ++ + LGK IHG++LR + L
Sbjct: 200 DQHEEALELFRAMQR-HENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGV 258
Query: 234 ----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283
CG + + +F++ RDVV W ++I + + G+ + L D++ +
Sbjct: 259 VWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSG 318
Query: 284 VKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSR 332
+ PN T VL AC AA G SF + L+ MY +CG I+ +R
Sbjct: 319 IWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNAR 378
Query: 333 KIFVLMPHKNLVSWNVMISVYG 354
++F MP +LVSW +IS Y
Sbjct: 379 RVFNGMPRPDLVSWTSLISGYA 400
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 150/336 (44%), Gaps = 64/336 (19%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPK-----VYKACSELKDYRVGKD 86
+WT+M Y +EE + LF M R ++F C K A + ++ +GK+
Sbjct: 188 SWTAMTSGYVRHDQHEEALELFRAM----QRHENFKCNKFTMSSALAASAAIQSLHLGKE 243
Query: 87 VYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL 146
++ +++ I +D D +V ++L D Y KC +
Sbjct: 244 IHGHILRIG------------------------------LDLDGVVWSALSDMYGKCGSI 273
Query: 147 KVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
+ F K +D+VSW AM+ Y G REE L ++ +++ + PN + SGVL
Sbjct: 274 GEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDL--LKSGIWPNEFTFSGVLN 331
Query: 207 ACAQVKGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVV 255
ACA +LGK +HGY+ R +H+ T CG + + VFN + D+V
Sbjct: 332 ACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGMPRPDLVS 391
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV- 314
W S+IS + ++GQ +AL ++ + +P+ +T V VL AC + +GL +
Sbjct: 392 WTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEYFDSIK 451
Query: 315 -----------WNALIDMYGRCGAIQKSRKIFVLMP 339
+ LID+ R G +Q++ I MP
Sbjct: 452 EKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMP 487
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 99/229 (43%), Gaps = 54/229 (23%)
Query: 179 EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH----------GYVLRHH 228
E L + ++++ +P+ + S +L C Q++ + G +H G V+ +
Sbjct: 70 EQKRLREAIQILDHVDRPSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGFVPGVVISNR 129
Query: 229 I-HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG-------------------- 267
I + C ++ + +F++++ RD+ WN +IS + ++G
Sbjct: 130 ILDMYIKCNSLVNAKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFSW 189
Query: 268 -----------QVVDALDLLRDVIV-ANVKPNTVTIVSVLPACLKLAALPQ--------- 306
Q +AL+L R + N K N T+ S L A + +L
Sbjct: 190 TAMTSGYVRHDQHEEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHIL 249
Query: 307 --GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
GL VW+AL DMYG+CG+I ++R IF +++VSW MI Y
Sbjct: 250 RIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRY 298
>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Vitis vinifera]
Length = 872
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 119/465 (25%), Positives = 201/465 (43%), Gaps = 118/465 (25%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G +VH+++ L LG+ LL +F +W ++G Y
Sbjct: 113 GSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAK 172
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDV--------------- 87
GY++E +NL++ M+ G+RPD + P V + C L D G++V
Sbjct: 173 AGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDV 232
Query: 88 -------------------------------YDYMISIKFEGNACVKRPLL-----DLFI 111
++ MIS FE + C++ L + F+
Sbjct: 233 VNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFV 292
Query: 112 KCGRMEITSGLF--EEMDQDFL------------------VNNSLIDFYAKCRYLKVSHC 151
M +TS + E + + L VNNSLI ++ +
Sbjct: 293 DPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEM 352
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FSK++ KDLVSW AM++GY G E+ ME + P+ I+++ VL+ACA +
Sbjct: 353 VFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIME--HEGVVPDEITIASVLSACAGL 410
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ G +H + R I + + C + + VF+++ ++V+ W SII
Sbjct: 411 GLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSII 470
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLG 309
+ + +AL + +I++ +KPN+VT+VSVL AC ++ AL GLG
Sbjct: 471 LGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLG 529
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
F+ NAL+DMY RCG ++ + F K++ SWN++++ Y
Sbjct: 530 FDGFLPNALLDMYVRCGRMEPAWNQFNSC-EKDVASWNILLTGYA 573
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 87/358 (24%), Positives = 156/358 (43%), Gaps = 58/358 (16%)
Query: 5 IQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPD 64
IQ+H+ + C E + +WT+M+ Y G E+ V + +M +GV PD
Sbjct: 338 IQMHSS-VGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPD 396
Query: 65 HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFE 124
V AC+ L LLD I +GL
Sbjct: 397 EITIASVLSACAGLG--------------------------LLDKGIMLHEFADRTGLTS 430
Query: 125 EMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLL 184
+ +V NSLID Y+KCR + + F +I K+++SW +++ G L E
Sbjct: 431 YV----IVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFF 486
Query: 185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI-----------HLST 233
+M + ++PN+++L VL+ACA++ + GK IH + LR + +
Sbjct: 487 QQMIL---SLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYV 543
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
CG + + + FN +DV WN +++ + + G+ A++L +I ++V P+ +T S
Sbjct: 544 RCGRMEPAWNQFNSCE-KDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTS 602
Query: 294 VLPACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFVLMP 339
+L AC + + GL + + +++D+ GR G ++ + + MP
Sbjct: 603 LLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMP 660
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 94/211 (44%), Gaps = 24/211 (11%)
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
N+++ L G E+ LD M+ +Q ++ T +L C + G +H YV
Sbjct: 63 NSLILELCLKGDLEKALIHLDSMQELQVSVEEET--YIALLRLCEWKRAASEGSRVHSYV 120
Query: 225 LRHHIHLSTACGFVICSC-----------SVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
+ L G + S VF +++ RD+ WN ++ + ++G +AL
Sbjct: 121 SKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEAL 180
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMY 322
+L ++ ++P+ T VL C L L +G + V NALI MY
Sbjct: 181 NLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMY 240
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+CG I +R +F MP ++ +SWN MIS Y
Sbjct: 241 VKCGDIFSARLVFDRMPRRDRISWNAMISGY 271
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 23/148 (15%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYN---------------VLGYYEE 48
G ++HAH + G+ FL + LL+++ M +N + GY ++
Sbjct: 516 GKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCEKDVASWNILLTGYAQQ 575
Query: 49 -----IVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
V LF+ MI+ V PD + ACS G + ++ M KF +K
Sbjct: 576 GKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESM-EHKFHIAPNLK 634
Query: 104 R--PLLDLFIKCGRMEITSGLFEEMDQD 129
++DL + GR+E ++M D
Sbjct: 635 HYASVVDLLGRAGRLEDAYEFIKKMPID 662
>gi|357154827|ref|XP_003576915.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like, partial [Brachypodium distachyon]
Length = 735
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 102/396 (25%), Positives = 181/396 (45%), Gaps = 78/396 (19%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYN 41
G+ VH ++ G++ LG+ L++++ +W S +G +
Sbjct: 195 FGLGVHGLVLKTGLDSIVNLGNALVDMYGKFGHVEASMKVFEGMPERNEVSWNSAIGCFL 254
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G Y +++ LF M ++G P + A EL + +G++V+ Y
Sbjct: 255 NAGLYGDVLALFRGMSERGFMPGSITLSSLLPALVELGYFDLGREVHGY----------S 304
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+KR M+ D V NSL+D YAK L+ + F KI+ +++
Sbjct: 305 IKRA--------------------MELDIFVANSLVDMYAKFGSLEKACAVFEKIEVRNV 344
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ-PNTISLSGVLAACAQVKGVKLGKAI 220
VSWNAM+A G E L+ +M Q D + PN+I+L +L AC+++ +K GK I
Sbjct: 345 VSWNAMIANLVQNGAESEAFGLVIKM---QKDGECPNSITLVNLLPACSRMASLKTGKQI 401
Query: 221 HGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H + +R I + CG + + S+F+ LS +D V +N++I + +S
Sbjct: 402 HAWSIRTGLMFDLFISNALIDMYAKCGQLRLAQSIFD-LSEKDDVSYNTLILGYSQSPWS 460
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNAL 318
++L+L + + ++ + ++ + L AC L++ QG L F+ N L
Sbjct: 461 FESLNLFKQLSSVGIEYDAISFMGALTACTNLSSFKQGKEIHGVLVRRLLSNHPFLANTL 520
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ +Y + G + + KIF + K++ SWN MI YG
Sbjct: 521 LGLYTKGGMLDTASKIFNRIKEKDVASWNNMIMGYG 556
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 122/245 (49%), Gaps = 24/245 (9%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D N+L+ FYA C + + F ++ +D+VSWN++++ + ++ L +
Sbjct: 110 DVFAGNTLVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFLANKMFDDARQAL--LS 167
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----IHLSTAC-------GF 237
M+++ + N SL V+ AC + G +HG VL+ ++L A G
Sbjct: 168 MMRSGVPVNVASLVSVVPACGVEQEGGFGLGVHGLVLKTGLDSIVNLGNALVDMYGKFGH 227
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
V S VF + R+ V WNS I F+ +G D L L R + P ++T+ S+LPA
Sbjct: 228 VEASMKVFEGMPERNEVSWNSAIGCFLNAGLYGDVLALFRGMSERGFMPGSITLSSLLPA 287
Query: 298 CLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
++L ++ + + FV N+L+DMY + G+++K+ +F + +N+VSW
Sbjct: 288 LVELGYFDLGREVHGYSIKRAMELDIFVANSLVDMYAKFGSLEKACAVFEKIEVRNVVSW 347
Query: 347 NVMIS 351
N MI+
Sbjct: 348 NAMIA 352
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 86/393 (21%), Positives = 159/393 (40%), Gaps = 77/393 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
+LG +VH + I +EL F+ + L++++ +W +M+
Sbjct: 295 DLGREVHGYSIKRAMELDIFVANSLVDMYAKFGSLEKACAVFEKIEVRNVVSWNAMIANL 354
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G E L M G P+ + ACS + + GK ++ + I +
Sbjct: 355 VQNGAESEAFGLVIKMQKDGECPNSITLVNLLPACSRMASLKTGKQIHAWSIRTGLMFDL 414
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
+ L+D++ KCG++ + +F+ + +KD
Sbjct: 415 FISNALIDMYAKCGQLRLAQSIFD-------------------------------LSEKD 443
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
VS+N ++ GY+ + E NL ++ + ++ + IS G L AC + K GK I
Sbjct: 444 DVSYNTLILGYSQSPWSFESLNLFKQLSSV--GIEYDAISFMGALTACTNLSSFKQGKEI 501
Query: 221 HGYVLR----HHIHLS-------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
HG ++R +H L+ T G + + +FN++ +DV WN++I + GQ+
Sbjct: 502 HGVLVRRLLSNHPFLANTLLGLYTKGGMLDTASKIFNRIKEKDVASWNNMIMGYGMHGQI 561
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNAL 318
A L + V + V+ ++VL C L Q L + +
Sbjct: 562 DAAFHLFDLMKDHGVTYDHVSYIAVLSVCSHGGLVERGKKYFSHMLAQNLEPQQMHYACM 621
Query: 319 IDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+D+ GR G + +S +I + MP H N W ++
Sbjct: 622 VDLLGRSGQLTESVEIILDMPFHANSDVWGALL 654
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 70/132 (53%), Gaps = 11/132 (8%)
Query: 233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
ACG + VF+++ RDVV WNS++S+F+ + DA L ++ + V N ++V
Sbjct: 122 AACGHAGDARRVFDEMPARDVVSWNSLVSSFLANKMFDDARQALLSMMRSGVPVNVASLV 181
Query: 293 SVLPACLKLAALPQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIFVLMPHK 341
SV+PAC GLG V NAL+DMYG+ G ++ S K+F MP +
Sbjct: 182 SVVPACGVEQEGGFGLGVHGLVLKTGLDSIVNLGNALVDMYGKFGHVEASMKVFEGMPER 241
Query: 342 NLVSWNVMISVY 353
N VSWN I +
Sbjct: 242 NEVSWNSAIGCF 253
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 81/380 (21%), Positives = 153/380 (40%), Gaps = 99/380 (26%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN------WTSMMGM-------YN--VLGY 45
++ G Q+HA I G+ F+ + L++++ S+ + YN +LGY
Sbjct: 395 LKTGKQIHAWSIRTGLMFDLFISNALIDMYAKCGQLRLAQSIFDLSEKDDVSYNTLILGY 454
Query: 46 YE-----EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+ E +NLF + G+ D AC+ L ++ GK+++ ++
Sbjct: 455 SQSPWSFESLNLFKQLSSVGIEYDAISFMGALTACTNLSSFKQGKEIHGVLV-------- 506
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
R LL + FL N +L+ Y K L + F++IK+KD
Sbjct: 507 ---RRLLS------------------NHPFLAN-TLLGLYTKGGMLDTASKIFNRIKEKD 544
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+ SWN M+ GY + G + +L D M+ + + +S VL+ C+ V+ GK
Sbjct: 545 VASWNNMIMGYGMHGQIDAAFHLFDLMK--DHGVTYDHVSYIAVLSVCSHGGLVERGKKY 602
Query: 221 HGYVLRHHI---HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLR 277
++L ++ + AC ++ RSGQ+ ++++++
Sbjct: 603 FSHMLAQNLEPQQMHYAC-----------------------MVDLLGRSGQLTESVEIIL 639
Query: 278 DVIVANVKPNTVTIVSVLPAC-----LKLAAL---------PQGLGTGSFVWNALIDMYG 323
D+ N+ ++L AC ++LA P+ G ++ L +MY
Sbjct: 640 DM---PFHANSDVWGALLGACRIHGNIELAQYAADHLFELKPEHSG----YYSVLRNMYA 692
Query: 324 RCGAIQKSRKIFVLMPHKNL 343
G ++ KI LM + +
Sbjct: 693 EAGRWNEAHKIRTLMKSRKV 712
>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 748
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/348 (24%), Positives = 182/348 (52%), Gaps = 27/348 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMI--DKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
+W S++ Y G + V + LM+ D + + S+ ++G+ ++
Sbjct: 108 SWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHG 167
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKV 148
+++ F V PL+D++ K G + +F+E+ +++ ++ N+LI +C ++
Sbjct: 168 HVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVED 227
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
S F +++++D +SW +M+ G+ G + ++ EM++ ++Q + + VL AC
Sbjct: 228 SKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKL--ENLQMDQYTFGSVLTAC 285
Query: 209 AQVKGVKLGKAIHGYVLR----HHIHLSTACGFVICSC-------SVFNQLSTRDVVVWN 257
V ++ GK +H Y++R +I +++A + C C +VF +++ ++VV W
Sbjct: 286 GGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWT 345
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGT 310
+++ + ++G +A+ D+ ++P+ T+ SV+ +C LA+L +G L +
Sbjct: 346 AMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTS 405
Query: 311 G--SF--VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G SF V NAL+ +YG+CG+I+ S ++F + K+ V+W ++S Y
Sbjct: 406 GLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYA 453
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 157/344 (45%), Gaps = 56/344 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ + G + +++F M + ++ D + V AC + + GK V+ Y+
Sbjct: 242 SWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYI 301
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I ++ N V ++L+D Y KC+ +K +
Sbjct: 302 IRTDYKDN------------------------------IFVASALVDMYCKCKNIKSAEA 331
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K+ K++VSW AML GY G+ EE +M+ + ++P+ +L V+++CA +
Sbjct: 332 VFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQ--KYGIEPDDFTLGSVISSCANL 389
Query: 212 KGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
++ G H L I +S A CG + S +FN++S +D V W +++
Sbjct: 390 ASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALV 449
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGSF 313
S + + G+ + + L ++ +KP+ VT + VL AC + + +G +
Sbjct: 450 SGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGI 509
Query: 314 V-----WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMIS 351
V + +ID++ R G I+++R MP + +SW ++S
Sbjct: 510 VPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLS 553
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/336 (24%), Positives = 150/336 (44%), Gaps = 54/336 (16%)
Query: 73 KACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLV 132
K C E ++ K+++ ++I + L+ + K G + +F++M L
Sbjct: 17 KLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLY 76
Query: 133 N-NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
+ N+++ Y+K + F + ++D VSWN++++GYA G + + M
Sbjct: 77 SWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKND 136
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVIC 240
N I+ S +L ++ VKLG+ IHG+V++ + + + G + C
Sbjct: 137 GSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISC 196
Query: 241 SCSVFNQLS-------------------------------TRDVVVWNSIISAFVRSGQV 269
+ VF++L RD + W S+I+ F ++G
Sbjct: 197 ARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLD 256
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNAL 318
DA+D+ R++ + N++ + T SVL AC + AL +G + FV +AL
Sbjct: 257 RDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASAL 316
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+DMY +C I+ + +F M KN+VSW M+ YG
Sbjct: 317 VDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYG 352
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 128/319 (40%), Gaps = 75/319 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++ G QVHA++I + F+ S L++++C +WT+M+
Sbjct: 291 LQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVG 350
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y GY EE V F M G+ PD F V +C+ L G + ++
Sbjct: 351 YGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISF 410
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V L+ L+ KCG +E + LF E I K
Sbjct: 411 ITVSNALVTLYGKCGSIEDSHRLFNE------------------------------ISFK 440
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D V+W A+++GYA G E L + M+ ++P+ ++ GVL+AC++ V+ G
Sbjct: 441 DEVTWTALVSGYAQFGKANETIGLFE--SMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQ 498
Query: 220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
I ++ H G V + +I F R+G++ +A + + +
Sbjct: 499 IFESMINEH-------GIVPIQDH------------YTCMIDLFSRAGRIEEARNFINKM 539
Query: 280 IVANVKPNTVTIVSVLPAC 298
+ P+ ++ ++L +C
Sbjct: 540 PFS---PDAISWATLLSSC 555
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 84/203 (41%), Gaps = 55/203 (27%)
Query: 203 GVLAACAQVKGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTR 251
+L C + K +H ++++ + T G + +C VF+Q+
Sbjct: 14 ALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHP 73
Query: 252 DVVVWNSIISAFVRSGQVVDALDLL-----RD---------------VIVANVKP----- 286
++ WN+I+SA+ + G+V + L RD +I +VK
Sbjct: 74 NLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLML 133
Query: 287 -------------NTVTIVSVLPACLKLA------ALPQGLGTGSFVWNALIDMYGRCGA 327
+T+ I++ C+KL + G + FV + L+DMY + G
Sbjct: 134 KNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGM 193
Query: 328 IQKSRKIFVLMPHKNLVSWNVMI 350
I +RK+F +P KN+V +N +I
Sbjct: 194 ISCARKVFDELPEKNVVMYNTLI 216
>gi|255543589|ref|XP_002512857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547868|gb|EEF49360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 454
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 156/353 (44%), Gaps = 60/353 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ G E + FY M ++P+ P KACS L D GK +
Sbjct: 49 SWNSLIADLARSGDSIESLRAFYSMRKLNLKPNRSTFPCAIKACSSLLDLHWGKQTHQQA 108
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ FE + V L+D++ KCGR+ LF+E
Sbjct: 109 LVFGFESDLFVSSALVDMYSKCGRLSDARILFDE-------------------------- 142
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP-------NTISLSGV 204
I +++V W +M+ GY E L + + +++ +++++ V
Sbjct: 143 ----ITHRNIVIWTSMITGYIQNDHAHEALLLFKQFLIEESERNEEKDEVLMDSVAMVSV 198
Query: 205 LAACAQVKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDV 253
L+AC+++ G + K +HG+V++ + CG V S VF+++ +D
Sbjct: 199 LSACSRISGKGMTKGVHGFVVKKGLDEDVGIENTLLDAYAKCGEVGVSRQVFDEIVEKDA 258
Query: 254 VVWNSIISAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVLPACLKLAALPQ------ 306
+ WNS+I+ + ++G +A ++ +I VK N VT+ ++L AC AL
Sbjct: 259 ISWNSMIAVYAQNGLSSEAFEVFHGMIKYGYVKYNAVTLSTLLLACAHSGALQTGKCIHD 318
Query: 307 -----GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
GL V +LIDMY +CG +Q +RK F M KN+ SW M++ YG
Sbjct: 319 QVIRMGLDDNVIVGTSLIDMYCKCGRVQMARKTFDGMKEKNVKSWTAMVAGYG 371
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 99/377 (26%), Positives = 163/377 (43%), Gaps = 77/377 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G Q H +V G E F+ S L++++ WTSM+ Y
Sbjct: 101 GKQTHQQALVFGFESDLFVSSALVDMYSKCGRLSDARILFDEITHRNIVIWTSMITGYIQ 160
Query: 43 LGYYEEIVNLF-YLMIDKGVRP--------DHFVCPKVYKACSELKDYRVGKDVYDYMIS 93
+ E + LF +I++ R D V ACS + + K V+ ++
Sbjct: 161 NDHAHEALLLFKQFLIEESERNEEKDEVLMDSVAMVSVLSACSRISGKGMTKGVHGFV-- 218
Query: 94 IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKF 153
VK+ L D+D + N+L+D YAKC + VS F
Sbjct: 219 --------VKKGL--------------------DEDVGIENTLLDAYAKCGEVGVSRQVF 250
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG 213
+I +KD +SWN+M+A YA G E + M + ++ N ++LS +L ACA
Sbjct: 251 DEIVEKDAISWNSMIAVYAQNGLSSEAFEVFHGM-IKYGYVKYNAVTLSTLLLACAHSGA 309
Query: 214 VKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISA 262
++ GK IH V+R I + CG V + F+ + ++V W ++++
Sbjct: 310 LQTGKCIHDQVIRMGLDDNVIVGTSLIDMYCKCGRVQMARKTFDGMKEKNVKSWTAMVAG 369
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---LGTGSFVWNALI 319
+ G +AL++ +I + VKPN +T VSVL AC L +G L +F+ A+
Sbjct: 370 YGMHGCAREALNIFYKMIRSGVKPNYITFVSVLAACSHAGLLDEGYFQLDQQAFL-AAIT 428
Query: 320 DMYGRCGAIQKSRKIFV 336
+ +G G + KS+ + V
Sbjct: 429 ERHG-AGKLLKSKSLVV 444
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 245 FNQ-LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL-- 301
FN+ +V WNS+I+ RSG +++L + N+KPN T + AC L
Sbjct: 38 FNKYFEKTNVFSWNSLIADLARSGDSIESLRAFYSMRKLNLKPNRSTFPCAIKACSSLLD 97
Query: 302 ---------AALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
AL G + FV +AL+DMY +CG + +R +F + H+N+V W MI+
Sbjct: 98 LHWGKQTHQQALVFGFESDLFVSSALVDMYSKCGRLSDARILFDEITHRNIVIWTSMITG 157
Query: 353 Y 353
Y
Sbjct: 158 Y 158
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 21/97 (21%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++ G +H +I G++ +G+ L++++C +WT+M+
Sbjct: 310 LQTGKCIHDQVIRMGLDDNVIVGTSLIDMYCKCGRVQMARKTFDGMKEKNVKSWTAMVAG 369
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACS 76
Y + G E +N+FY MI GV+P++ V ACS
Sbjct: 370 YGMHGCAREALNIFYKMIRSGVKPNYITFVSVLAACS 406
>gi|255536747|ref|XP_002509440.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549339|gb|EEF50827.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 678
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 170/357 (47%), Gaps = 48/357 (13%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKD----- 86
+W++++ Y+ G+ +E ++ FY M GV+ + F P + KAC+ D +G+
Sbjct: 174 SWSALISGYSQNGFGKEAISAFYEMHLLGVKCNEFTFPSLLKACTSTTDMWLGRQDMILS 233
Query: 87 -VYDYMISIKFEGNACV-------KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLID 138
+ S+ NAC R + IK D D N+L+D
Sbjct: 234 GIRPNEFSLSCMINACTGLEDSSQGRKIHGYLIKLA-----------YDLDLFSANALVD 282
Query: 139 FYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT 198
YAK L+ + F +I + D+VSWNA++AG AL + L +M ++ M PN
Sbjct: 283 MYAKVGTLEEAIRVFEEIAKPDIVSWNAIIAGCALREYHCWALELFGKMN--RSGMCPNM 340
Query: 199 ISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQ 247
++S L ACA + +LG+ +H +L+ I + + C + + +FN
Sbjct: 341 FTISSALKACAGMGLKELGRQLHSSLLKMDIRSDSFLAVGLIDMYSKCDLMTDARLLFNL 400
Query: 248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA----- 302
+ RD++VWN+ I+ ++G+ ++A+ L + V N +T+ +VL + L
Sbjct: 401 MPERDLIVWNAAITGHSQNGEDLEAVSLFPSMHKEGVGFNQITLSTVLKSVASLQVDHIC 460
Query: 303 ------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+L G ++V N+LID YG+CG I+ + +IF P +LV++ MI+ Y
Sbjct: 461 SQIHALSLKSGFQFDNYVANSLIDTYGKCGRIKDATRIFQESPFVDLVAFTSMITAY 517
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/383 (25%), Positives = 173/383 (45%), Gaps = 53/383 (13%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRP 63
G ++H +LI +L F + L++ MY +G EE + +F ++ +P
Sbjct: 258 GRKIHGYLIKLAYDLDLFSANALVD----------MYAKVGTLEEAIRVF----EEIAKP 303
Query: 64 DHFVCPKVYKACSELKDYR------VGK----DVYDYMISIKFEGNACVKRPLLDLFIKC 113
D + C+ L++Y GK + M +I AC L +L
Sbjct: 304 DIVSWNAIIAGCA-LREYHCWALELFGKMNRSGMCPNMFTISSALKACAGMGLKEL---- 358
Query: 114 GRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYAL 173
GR +S L ++ D + LID Y+KC + + F+ + ++DL+ WNA + G++
Sbjct: 359 GRQLHSSLLKMDIRSDSFLAVGLIDMYSKCDLMTDARLLFNLMPERDLIVWNAAITGHSQ 418
Query: 174 GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA---------CAQVKGVKL--GKAIHG 222
G E +L M + + N I+LS VL + C+Q+ + L G
Sbjct: 419 NGEDLEAVSLFPSMH--KEGVGFNQITLSTVLKSVASLQVDHICSQIHALSLKSGFQFDN 476
Query: 223 YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
YV I CG + + +F + D+V + S+I+A+ + GQ +AL L ++
Sbjct: 477 YVANSLIDTYGKCGRIKDATRIFQESPFVDLVAFTSMITAYSQDGQGEEALKLYLEMQDR 536
Query: 283 NVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKS 331
++P++ S+L AC L+A Q G + F N+L++MY +CG+I +
Sbjct: 537 KIRPDSFVCSSLLNACANLSAYEQGKQVHVHVLKFGFISDIFAGNSLVNMYAKCGSIDDA 596
Query: 332 RKIFVLMPHKNLVSWNVMISVYG 354
+ F +P + +VSW+ MI +
Sbjct: 597 DRAFSEIPERGIVSWSAMIGGFA 619
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 132/278 (47%), Gaps = 52/278 (18%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
+ QD + N LI+ Y+KC++ K + + + DLVSW+A+++GY+ GF +E +
Sbjct: 137 LSQDPKIRNLLINLYSKCQFFKYARKMVDESTEPDLVSWSALISGYSQNGFGKEAISAFY 196
Query: 186 EM------------------------------EMIQTDMQPNTISLSGVLAACAQVKGVK 215
EM +MI + ++PN SLS ++ AC ++
Sbjct: 197 EMHLLGVKCNEFTFPSLLKACTSTTDMWLGRQDMILSGIRPNEFSLSCMINACTGLEDSS 256
Query: 216 LGKAIHGYVLR--HHIHLSTA---------CGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
G+ IHGY+++ + + L +A G + + VF +++ D+V WN+II+
Sbjct: 257 QGRKIHGYLIKLAYDLDLFSANALVDMYAKVGTLEEAIRVFEEIAKPDIVSWNAIIAGCA 316
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQGLGTGSF 313
AL+L + + + PN TI S L AC L + L + + SF
Sbjct: 317 LREYHCWALELFGKMNRSGMCPNMFTISSALKACAGMGLKELGRQLHSSLLKMDIRSDSF 376
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ LIDMY +C + +R +F LMP ++L+ WN I+
Sbjct: 377 LAVGLIDMYSKCDLMTDARLLFNLMPERDLIVWNAAIT 414
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/329 (22%), Positives = 135/329 (41%), Gaps = 64/329 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMY 40
ELG Q+H+ L+ + +FL L++++ W + + +
Sbjct: 357 ELGRQLHSSLLKMDIRSDSFLAVGLIDMYSKCDLMTDARLLFNLMPERDLIVWNAAITGH 416
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+ G E V+LF M +GV + V K+ + L+ + ++ + F+
Sbjct: 417 SQNGEDLEAVSLFPSMHKEGVGFNQITLSTVLKSVASLQVDHICSQIHALSLKSGFQF-- 474
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
D V NSLID Y KC +K + F + D
Sbjct: 475 ----------------------------DNYVANSLIDTYGKCGRIKDATRIFQESPFVD 506
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
LV++ +M+ Y+ G EE L +EM ++P++ S +L ACA + + GK +
Sbjct: 507 LVAFTSMITAYSQDGQGEEALKLY--LEMQDRKIRPDSFVCSSLLNACANLSAYEQGKQV 564
Query: 221 HGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H +VL+ +++ CG + + F+++ R +V W+++I F + G
Sbjct: 565 HVHVLKFGFISDIFAGNSLVNMYAKCGSIDDADRAFSEIPERGIVSWSAMIGGFAQHGHG 624
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+AL L ++ + PN + + V AC
Sbjct: 625 KEALQLFNRMLEDGIPPNHMYVYDVPSAC 653
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 54/210 (25%)
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSV 244
P +IS S +L C K GK IH V++ I+L + C F + +
Sbjct: 104 PISISYSNLLFQCTASKASTPGKEIHARVIKLGLSQDPKIRNLLINLYSKCQFFKYARKM 163
Query: 245 FNQLSTRDVVVWNSIISAFVRSGQVVDALDLL---------------------------- 276
++ + D+V W+++IS + ++G +A+
Sbjct: 164 VDESTEPDLVSWSALISGYSQNGFGKEAISAFYEMHLLGVKCNEFTFPSLLKACTSTTDM 223
Query: 277 ----RDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNALIDM 321
+D+I++ ++PN ++ ++ AC L QG F NAL+DM
Sbjct: 224 WLGRQDMILSGIRPNEFSLSCMINACTGLEDSSQGRKIHGYLIKLAYDLDLFSANALVDM 283
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
Y + G ++++ ++F + ++VSWN +I+
Sbjct: 284 YAKVGTLEEAIRVFEEIAKPDIVSWNAIIA 313
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 21/96 (21%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
E G QVH H++ G F G+ L+ ++ +W++M+G +
Sbjct: 559 EQGKQVHVHVLKFGFISDIFAGNSLVNMYAKCGSIDDADRAFSEIPERGIVSWSAMIGGF 618
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACS 76
G+ +E + LF M++ G+ P+H V AC+
Sbjct: 619 AQHGHGKEALQLFNRMLEDGIPPNHMYVYDVPSACN 654
>gi|218193846|gb|EEC76273.1| hypothetical protein OsI_13747 [Oryza sativa Indica Group]
Length = 602
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 108/382 (28%), Positives = 181/382 (47%), Gaps = 45/382 (11%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVL-GYYEEIVNLFYLMIDK 59
+ LG VH G++ F+GS L++++ N + V G E L+ +M+D
Sbjct: 162 IALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDG 221
Query: 60 GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC---VKRPLLDLF--IKCG 114
V+ V A D R F AC V DLF ++
Sbjct: 222 YVKAG-----SVSSAVELFGDMRASG------CEPNFATLACFLSVSATESDLFFGVQLH 270
Query: 115 RMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALG 174
+ + GL E+ V N+L+ YAKC+ L F + + DLV+WN M++G
Sbjct: 271 TLAVKYGLESEV----AVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQN 326
Query: 175 GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST- 233
GF ++ L +M+ ++ ++P++++L +L A + G GK +HGY++R+ +H+
Sbjct: 327 GFVDQALLLFCDMQ--KSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVF 384
Query: 234 ----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283
C V + SV++ DVV+ +++IS +V +G +A+ + R ++
Sbjct: 385 LVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQG 444
Query: 284 VKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSR 332
++PN V I SVLPAC +AA+ G S+ V +AL+DMY +CG + S
Sbjct: 445 IRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSH 504
Query: 333 KIFVLMPHKNLVSWNVMISVYG 354
IF + K+ V+WN MIS +
Sbjct: 505 YIFSKISAKDEVTWNSMISSFA 526
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 145/287 (50%), Gaps = 43/287 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W M+ G+ ++ + LF M G+RPD + A ++L + GK+++ Y+
Sbjct: 315 TWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYI 374
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ C M++ FLV+ +L+D Y KCR ++++
Sbjct: 375 VR------------------NCVHMDV-----------FLVS-ALVDIYFKCRAVRMAQS 404
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+ K D+V + M++GY L G +E + + ++ ++PN ++++ VL ACA +
Sbjct: 405 VYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYL--LEQGIRPNAVAIASVLPACASM 462
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+KLG+ +H Y L++ + + CG + S +F+++S +D V WNS+I
Sbjct: 463 AAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMI 522
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
S+F ++G+ +AL+L R++ + VK + VTI SVL AC L A+ G
Sbjct: 523 SSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYG 569
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 105/204 (51%), Gaps = 32/204 (15%)
Query: 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS 93
++M+ Y + G +E V +F ++++G+RP+ V AC+ + ++G++++ Y +
Sbjct: 418 STMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALK 477
Query: 94 IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKF 153
+EG +C V ++L+D YAKC L +SH F
Sbjct: 478 NAYEG-------------RC-----------------YVESALMDMYAKCGRLDLSHYIF 507
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG 213
SKI KD V+WN+M++ +A G EE NL EM M ++ + +++S VL+ACA +
Sbjct: 508 SKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCM--EGVKYSNVTISSVLSACASLPA 565
Query: 214 VKLGKAIHGYVLRHHIHLSTACGF 237
+ GK IHG V++ I + GF
Sbjct: 566 IYYGKEIHGVVIKGPIRADLSWGF 589
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 119/278 (42%), Gaps = 28/278 (10%)
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
CV L L ++ +T+GL D + L+ Y R + + FS + +
Sbjct: 47 RGCVSPSHLSLGLQVHGRAVTAGLHA---TDTALQTRLVGMYVLARRFRDAVAVFSSLPR 103
Query: 159 KDL---VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
+ WN ++ G + G +M + P++ + V+ +CA + +
Sbjct: 104 GAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIA 163
Query: 216 LGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
LG+ +H +V I + G + + VF+ ++ RD V+WN ++ +V
Sbjct: 164 LGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYV 223
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQGLGTGSF 313
++G V A++L D+ + +PN T+ L L A+ GL +
Sbjct: 224 KAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVA 283
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
V N L+ MY +C + K+F LMP +LV+WN MIS
Sbjct: 284 VANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMIS 321
>gi|356514087|ref|XP_003525738.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g01580-like [Glycine max]
Length = 701
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 166/347 (47%), Gaps = 57/347 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGV---RPDHFVCPKVYKACSELKDYRVGKDVYD 89
W +++ Y + G + E ++LF+ M V RPD++ K+CS L+ +GK ++
Sbjct: 70 WNALLRSYFLEGKWVETLSLFHQMNADAVTEERPDNYTVSIALKSCSGLQKLELGKMIHG 129
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
+ L +++D D V ++LI+ Y+KC + +
Sbjct: 130 F-------------------------------LKKKIDSDMFVGSALIELYSKCGQMNDA 158
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F++ + D+V W +++ GY G E M +++ + P+ ++L +ACA
Sbjct: 159 VKVFTEYPKPDVVLWTSIITGYEQNGSPELALAFFSRMVVLE-QVSPDPVTLVSAASACA 217
Query: 210 QVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
Q+ LG+++HG+V R ++L G + + ++F ++ +D++ W+S
Sbjct: 218 QLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRIAANLFREMPYKDIISWSS 277
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN-- 316
+++ + +G +AL+L ++I ++ N VT++S L AC + L +G N
Sbjct: 278 MVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKQIHKLAVNYG 337
Query: 317 ---------ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
AL+DMY +C + + + ++F MP K++VSW V+ S Y
Sbjct: 338 FELDITVSTALMDMYLKCFSPENAIELFNRMPKKDVVSWAVLFSGYA 384
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/398 (23%), Positives = 173/398 (43%), Gaps = 77/398 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+ELG +H L ++ F+GS L+E++ WTS++
Sbjct: 121 LELGKMIHGFLKK-KIDSDMFVGSALIELYSKCGQMNDAVKVFTEYPKPDVVLWTSIITG 179
Query: 40 YNVLGYYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
Y G E + F M+ + V PD AC++L D+ +G+ V+ ++ F+
Sbjct: 180 YEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDT 239
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
C+ NS+++ Y K ++++ F ++
Sbjct: 240 KLCLA------------------------------NSILNLYGKTGSIRIAANLFREMPY 269
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
KD++SW++M+A YA G NL +EM I ++ N +++ L ACA ++ GK
Sbjct: 270 KDIISWSSMVACYADNGAETNALNLFNEM--IDKRIELNRVTVISALRACASSSNLEEGK 327
Query: 219 AIH----GYVLRHHIHLSTACGFVICSC-------SVFNQLSTRDVVVWNSIISAFVRSG 267
IH Y I +STA + C +FN++ +DVV W + S + G
Sbjct: 328 QIHKLAVNYGFELDITVSTALMDMYLKCFSPENAIELFNRMPKKDVVSWAVLFSGYAEIG 387
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWN 316
+L + +++ +P+ + +V +L A +L + Q G F+
Sbjct: 388 MAHKSLGVFCNMLSNGTRPDAIALVKILAASSELGIVQQALCLHAFVTKSGFDNNEFIGA 447
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+LI++Y +C +I + K+F + H ++V+W+ +I+ YG
Sbjct: 448 SLIELYAKCSSIDNANKVFKGLRHTDVVTWSSIIAAYG 485
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 126/249 (50%), Gaps = 23/249 (9%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D V L YA+ L +H F + K + WNA+L Y L G E +L +M
Sbjct: 35 DSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEGKWVETLSLFHQMN 94
Query: 189 MIQ-TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH----------HIHLSTACGF 237
T+ +P+ ++S L +C+ ++ ++LGK IHG++ + I L + CG
Sbjct: 95 ADAVTEERPDNYTVSIALKSCSGLQKLELGKMIHGFLKKKIDSDMFVGSALIELYSKCGQ 154
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL-RDVIVANVKPNTVTIVSVLP 296
+ + VF + DVV+W SII+ + ++G AL R V++ V P+ VT+VS
Sbjct: 155 MNDAVKVFTEYPKPDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAAS 214
Query: 297 ACLKLAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
AC +L+ G FV N+++++YG+ G+I+ + +F MP+K+++S
Sbjct: 215 ACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRIAANLFREMPYKDIIS 274
Query: 346 WNVMISVYG 354
W+ M++ Y
Sbjct: 275 WSSMVACYA 283
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 143/332 (43%), Gaps = 56/332 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W+SM+ Y G +NLF MIDK + + +AC+ + GK ++
Sbjct: 274 SWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKQIHKLA 333
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
++ FE D V+ +L+D Y KC + +
Sbjct: 334 VNYGFE------------------------------LDITVSTALMDMYLKCFSPENAIE 363
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+++ +KD+VSW + +GYA G + + M+ +P+ I+L +LAA +++
Sbjct: 364 LFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVF--CNMLSNGTRPDAIALVKILAASSEL 421
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
V+ +H +V + I L C + + VF L DVV W+SII
Sbjct: 422 GIVQQALCLHAFVTKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGLRHTDVVTWSSII 481
Query: 261 SAFVRSGQVVDALDLLRDVIV-ANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA-- 317
+A+ GQ +AL L + ++VKPN VT VS+L AC + +G+ + N
Sbjct: 482 AAYGFHGQGEEALKLSHQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVNEYQ 541
Query: 318 ----------LIDMYGRCGAIQKSRKIFVLMP 339
++D+ GR G + K+ + MP
Sbjct: 542 LMPNIEHYGIMVDLLGRMGELDKALDMINNMP 573
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/238 (20%), Positives = 96/238 (40%), Gaps = 52/238 (21%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
+E G Q+H + G EL + + L++++ +W +
Sbjct: 323 LEEGKQIHKLAVNYGFELDITVSTALMDMYLKCFSPENAIELFNRMPKKDVVSWAVLFSG 382
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y +G + + +F M+ G RPD K+ A SEL + ++ ++ F+ N
Sbjct: 383 YAEIGMAHKSLGVFCNMLSNGTRPDAIALVKILAASSELGIVQQALCLHAFVTKSGFDNN 442
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ L++L YAKC + ++ F ++
Sbjct: 443 EFIGASLIEL------------------------------YAKCSSIDNANKVFKGLRHT 472
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
D+V+W++++A Y G EE L +M +D++PN ++ +L+AC+ ++ G
Sbjct: 473 DVVTWSSIIAAYGFHGQGEEALKLSHQMSN-HSDVKPNDVTFVSILSACSHAGLIEEG 529
>gi|224065397|ref|XP_002301797.1| predicted protein [Populus trichocarpa]
gi|222843523|gb|EEE81070.1| predicted protein [Populus trichocarpa]
Length = 602
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 160/344 (46%), Gaps = 54/344 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y+ + E++NL++ M+++G +PD KA S LKD G+ ++
Sbjct: 74 WNAMIVAYSRRYHLTEVLNLYHQMVNEGGKPDSSTFTVAIKASSSLKDLEAGERIW---- 129
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
R +D C D V +S+++ Y KC + +
Sbjct: 130 -----------RRAVDFGYGC---------------DVFVGSSVLNLYVKCGKIDEAKLV 163
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F K+ ++D+V W M+ G G E ++ M + ++ + + + G++ ACA +
Sbjct: 164 FDKMVKRDVVCWATMITGLVQNGNVLEAVDMFRRMR--KEGIEGDGVLMLGLVQACANLG 221
Query: 213 GVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+KLG ++HG+ +R + + G + + VF Q+ ++ V W ++I
Sbjct: 222 ELKLGLSVHGHAVRREMLMDDVILQTSLVDMYAKIGDLELASRVFEQMPRKNAVSWGALI 281
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------LGT 310
S F ++G ALDLL ++ KP+T +VS L AC ++ L G LG
Sbjct: 282 SGFAQNGFAEYALDLLVEMQSLEFKPDTAVLVSALLACSQVGHLKLGKSIHGYIVRRLGF 341
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ ALIDMY +CG++ + IF + ++++ WN MI+ YG
Sbjct: 342 ELVLGTALIDMYAKCGSLSCAHAIFDRVDSRDVILWNTMIASYG 385
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 95/351 (27%), Positives = 175/351 (49%), Gaps = 63/351 (17%)
Query: 28 EVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDV 87
+V C W +M+ G E V++F M +G+ D + + +AC+ L + ++G V
Sbjct: 171 DVVC-WATMITGLVQNGNVLEAVDMFRRMRKEGIEGDGVLMLGLVQACANLGELKLGLSV 229
Query: 88 YDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147
+ G+A + L+D D ++ SL+D YAK L+
Sbjct: 230 H---------GHAVRREMLMD--------------------DVILQTSLVDMYAKIGDLE 260
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
++ F ++ +K+ VSW A+++G+A GF E +LL EM+ ++ +P+T L L A
Sbjct: 261 LASRVFEQMPRKNAVSWGALISGFAQNGFAEYALDLLVEMQSLE--FKPDTAVLVSALLA 318
Query: 208 CAQVKGVKLGKAIHGYVLRH---HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWN 257
C+QV +KLGK+IHGY++R + L TA CG + C+ ++F+++ +RDV++WN
Sbjct: 319 CSQVGHLKLGKSIHGYIVRRLGFELVLGTALIDMYAKCGSLSCAHAIFDRVDSRDVILWN 378
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA 317
++I+++ G + L L + AN+ P+ T S+L A L+ Q + G + +NA
Sbjct: 379 TMIASYGIHGDGKEVLSLFLKMKEANISPDHATFASLLSA---LSHSGQ-VDVGQYWFNA 434
Query: 318 ----------------LIDMYGRCGAIQKSRKIFVLM-PHKNLVSWNVMIS 351
++D++ R G ++++ ++ M L W ++S
Sbjct: 435 MVNECKIPPSEKHYACMVDLFSRAGRVEEAYQLIESMNTEPGLAIWVALLS 485
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 131/260 (50%), Gaps = 28/260 (10%)
Query: 118 ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFR 177
IT+GLF + +F N +I YA+ + + F K+ Q+ + +WNAM+ Y+
Sbjct: 31 ITTGLFFA-NSNF--NGLVIASYARIGGITSARHLFDKLPQRGVDAWNAMIVAYSRRYHL 87
Query: 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI------HGY-----VLR 226
EV NL +M + +P++ + + + A + +K ++ G+ I GY V
Sbjct: 88 TEVLNLYHQM--VNEGGKPDSSTFTVAIKASSSLKDLEAGERIWRRAVDFGYGCDVFVGS 145
Query: 227 HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286
++L CG + + VF+++ RDVV W ++I+ V++G V++A+D+ R + ++
Sbjct: 146 SVLNLYVKCGKIDEAKLVFDKMVKRDVVCWATMITGLVQNGNVLEAVDMFRRMRKEGIEG 205
Query: 287 NTVTIVSVLPACLKLAALPQGLGTGS------------FVWNALIDMYGRCGAIQKSRKI 334
+ V ++ ++ AC L L GL + +L+DMY + G ++ + ++
Sbjct: 206 DGVLMLGLVQACANLGELKLGLSVHGHAVRREMLMDDVILQTSLVDMYAKIGDLELASRV 265
Query: 335 FVLMPHKNLVSWNVMISVYG 354
F MP KN VSW +IS +
Sbjct: 266 FEQMPRKNAVSWGALISGFA 285
>gi|356528513|ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Glycine max]
Length = 651
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/365 (26%), Positives = 173/365 (47%), Gaps = 60/365 (16%)
Query: 14 CGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYK 73
CGV C S L W S G+ + + LF M G+ P++ P V K
Sbjct: 6 CGVTPCINRFSTLF----TWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLK 61
Query: 74 ACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN 133
AC++L R + ++ +++ F+ N V+ +D+++KCGR+E +F EM
Sbjct: 62 ACAKLSHLRNSQIIHAHVLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEM------- 114
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
+D+ SWNAML G+A GF + ++ LL M + +
Sbjct: 115 -----------------------PVRDIASWNAMLLGFAQSGFLDRLSCLLRHMRL--SG 149
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSC 242
++P+ +++ ++ + +VK + A++ + +R +H+ + CG + +
Sbjct: 150 IRPDAVTVLLLIDSILRVKSLTSLGAVYSFGIRIGVHMDVSVANTLIAAYSKCGNLCSAE 209
Query: 243 SVFNQLST--RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
++F+++++ R VV WNS+I+A+ + V A++ + ++ P+ TI+++L +C++
Sbjct: 210 TLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGFSPDISTILNLLSSCMQ 269
Query: 301 LAALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
AL GL S V N LI MY +CG + +R +F M K VSW VM
Sbjct: 270 PKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSARFLFNGMSDKTCVSWTVM 329
Query: 350 ISVYG 354
IS Y
Sbjct: 330 ISAYA 334
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 148/345 (42%), Gaps = 56/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ + G+ + + L M G+RPD + + +K VY +
Sbjct: 121 SWNAMLLGFAQSGFLDRLSCLLRHMRLSGIRPDAVTVLLLIDSILRVKSLTSLGAVYSFG 180
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I I + D V N+LI Y+KC L +
Sbjct: 181 IRIG------------------------------VHMDVSVANTLIAAYSKCGNLCSAET 210
Query: 152 KFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F +I + +VSWN+M+A YA F + V + M+ P+ ++ +L++C
Sbjct: 211 LFDEINSGLRSVVSWNSMIAAYA--NFEKHVKAVNCYKGMLDGGFSPDISTILNLLSSCM 268
Query: 210 QVK-----------GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
Q K GVKLG V+ I + + CG V + +FN +S + V W
Sbjct: 269 QPKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSARFLFNGMSDKTCVSWTV 328
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QG 307
+ISA+ G + +A+ L + A KP+ VT+++++ C + AL G
Sbjct: 329 MISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQTGALELGKWIDNYSINNG 388
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
L V NALIDMY +CG ++++F M ++ +VSW MI+
Sbjct: 389 LKDNVVVCNALIDMYAKCGGFNDAKELFYTMANRTVVSWTTMITA 433
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/336 (24%), Positives = 144/336 (42%), Gaps = 55/336 (16%)
Query: 27 LEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKD 86
L +W SM+ Y + + VN + M+D G PD + +C + K G
Sbjct: 219 LRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGFSPDISTILNLLSSCMQPKALFHGLL 278
Query: 87 VYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL 146
V+ + + + C D D V N+LI Y+KC +
Sbjct: 279 VHSHGVKL-----GC-------------------------DSDVCVVNTLICMYSKCGDV 308
Query: 147 KVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
+ F+ + K VSW M++ YA G+ E L + ME +P+ +++ +++
Sbjct: 309 HSARFLFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLFNAME--AAGEKPDLVTVLALIS 366
Query: 207 ACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVV 255
C Q ++LGK I Y + + I + CG + +F ++ R VV
Sbjct: 367 GCGQTGALELGKWIDNYSINNGLKDNVVVCNALIDMYAKCGGFNDAKELFYTMANRTVVS 426
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL------- 308
W ++I+A +G V DAL+L ++ +KPN +T ++VL AC + +GL
Sbjct: 427 WTTMITACALNGDVKDALELFFMMLEMGMKPNHITFLAVLQACAHGGLVERGLECFNMMT 486
Query: 309 -----GTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
G ++ ++D+ GR G ++++ +I MP
Sbjct: 487 QKYGINPGIDHYSCMVDLLGRKGHLREALEIIKSMP 522
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 83/206 (40%), Gaps = 34/206 (16%)
Query: 14 CG-VELCAFLGSQLLEVFC-NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKV 71
CG V FL + + + C +WT M+ Y GY E + LF M G +PD +
Sbjct: 305 CGDVHSARFLFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLAL 364
Query: 72 YKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFL 131
C + +GK + +Y I+ + N +
Sbjct: 365 ISGCGQTGALELGKWIDNYSINNGLKDNV------------------------------V 394
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V N+LID YAKC + F + + +VSW M+ AL G ++ L M++
Sbjct: 395 VCNALIDMYAKCGGFNDAKELFYTMANRTVVSWTTMITACALNGDVKDALELF--FMMLE 452
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLG 217
M+PN I+ VL ACA V+ G
Sbjct: 453 MGMKPNHITFLAVLQACAHGGLVERG 478
>gi|326495618|dbj|BAJ85905.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 788
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 132/251 (52%), Gaps = 24/251 (9%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
M+ D V S++D Y KC + + F+ + + +V+WN M+ GYAL EE +
Sbjct: 242 MEHDVKVGTSILDMYCKCGDIASAEGVFATMPSRTVVTWNCMIGGYALNERPEEAFDCF- 300
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH----HIHLSTA------- 234
++M Q ++ +LAACAQ + G+++HGY+ R H+ L TA
Sbjct: 301 -VQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYITRRQFLPHVVLETALLEMYSK 359
Query: 235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV 294
G V S VF Q++T+ +V WN++I+A++ ++A+ L D++ + P+ T+ +V
Sbjct: 360 VGKVKSSEKVFGQMTTKTLVSWNNMIAAYMYKEMYMEAITLFLDLLNQPLYPDYFTMSAV 419
Query: 295 LPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
+PA + L L Q G G + + NA++ MY RCG + SR+IF M K++
Sbjct: 420 VPAFVLLGLLRQCRQMHSYIIRLGYGENTLIMNAIMHMYARCGDVLSSREIFDKMAAKDV 479
Query: 344 VSWNVMISVYG 354
+SWN MI Y
Sbjct: 480 ISWNTMIMGYA 490
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 128/314 (40%), Gaps = 52/314 (16%)
Query: 62 RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSG 121
RPD F P V K C+ L G+ + I R+ + +
Sbjct: 105 RPDRFTFPVVLKCCARLGALDEGRAAHSAAI----------------------RLGVAAA 142
Query: 122 LFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVT 181
D NSL+ FYA+ + + F + +D+V+WN+M+ GY G
Sbjct: 143 -------DVYTGNSLLAFYARLGLVDDAERVFDGMPARDVVTWNSMVDGYVSNGLGTLAL 195
Query: 182 NLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVI-- 239
EM ++Q + + + LAAC + G+ +H YV+RH + G I
Sbjct: 196 VCFREMHE-ALEVQHDGVGIIAALAACCLESALMQGREVHAYVIRHGMEHDVKVGTSILD 254
Query: 240 --CSC-------SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
C C VF + +R VV WN +I + + + +A D + + VT
Sbjct: 255 MYCKCGDIASAEGVFATMPSRTVVTWNCMIGGYALNERPEEAFDCFVQMKAEGHQVEVVT 314
Query: 291 IVSVLPACLKLAALPQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIFVLMP 339
+++L AC + + G ++ AL++MY + G ++ S K+F M
Sbjct: 315 AINLLAACAQTESSLYGRSVHGYITRRQFLPHVVLETALLEMYSKVGKVKSSEKVFGQMT 374
Query: 340 HKNLVSWNVMISVY 353
K LVSWN MI+ Y
Sbjct: 375 TKTLVSWNNMIAAY 388
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/380 (21%), Positives = 163/380 (42%), Gaps = 76/380 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G +VHA++I G+E +G+ +L+++C W M+G Y +
Sbjct: 230 GREVHAYVIRHGMEHDVKVGTSILDMYCKCGDIASAEGVFATMPSRTVVTWNCMIGGYAL 289
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
EE + F M +G + + + AC++ + G+ V+ Y+ +F + +
Sbjct: 290 NERPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYITRRQFLPHVVL 349
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+ LL+++ K G+ +K S F ++ K LV
Sbjct: 350 ETALLEMYSKVGK------------------------------VKSSEKVFGQMTTKTLV 379
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SWN M+A Y E L ++++ + P+ ++S V+ A + ++ + +H
Sbjct: 380 SWNNMIAAYMYKEMYMEAITLF--LDLLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHS 437
Query: 223 YVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
Y++R +H+ CG V+ S +F++++ +DV+ WN++I + GQ
Sbjct: 438 YIIRLGYGENTLIMNAIMHMYARCGDVLSSREIFDKMAAKDVISWNTMIMGYAIHGQGRS 497
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPAC----------LKLAALPQGLGTGSFV--WNALI 319
AL++ ++ ++PN T VSVL AC + ++ + G + + +
Sbjct: 498 ALEMFSEMKCNGLRPNESTFVSVLTACSVSGLTDEGWTQFNSMQRDYGMIPQIEHYGCMT 557
Query: 320 DMYGRCGAIQKSRKIFVLMP 339
D+ GR G +++ + MP
Sbjct: 558 DLLGRAGDLKEVMQFIENMP 577
>gi|255568474|ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535508|gb|EEF37177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 654
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 164/332 (49%), Gaps = 36/332 (10%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++LG +VH ++ G + F+ + L+ + +W SM+
Sbjct: 142 VKLGKEVHGFVLRTGFDADVFVENALITYYSKCYDLDLSRKVFDRMTKRDVVSWNSMISG 201
Query: 40 YNVLGYYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
Y+ G YE+ L+ M+D G RP+ V +AC + +D G +V+ +++ + E
Sbjct: 202 YSQGGLYEDCKTLYREMVDFSGFRPNGVTVVSVLQACGQTQDLAFGMEVHKFIVDNQVEI 261
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
+ V L+ L+ KCG ++ LF+EM ++D + ++I Y+ S F +K
Sbjct: 262 DISVCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGLMLHGYVDQSLELFRGMK 321
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+ L +WNA++ G E V +L+ EM+ + +PN ++LS VL+ A +K G
Sbjct: 322 TQILSTWNAVITGLVQNNRHEGVLDLVREMQAL--GFRPNAVTLSSVLSTIAYFSSLKGG 379
Query: 218 KAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
K IH Y ++ +I+++TA G++ + VF+Q R +V+W +IISA+
Sbjct: 380 KEIHSYAIKIGYHRNIYVATAIIDMYAKSGYLRGAQRVFDQSKDRSLVIWTAIISAYAVH 439
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
G AL L +++ ++P+ VT +VL AC
Sbjct: 440 GDANLALGLFHEMLKQGIQPDPVTFTAVLAAC 471
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 94/424 (22%), Positives = 182/424 (42%), Gaps = 106/424 (25%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNVLG 44
Q+HA LI+ V +L S+L+ ++ ++ +M+ Y++
Sbjct: 45 QLHARLILFSVTPENYLASKLVALYSKTNHLAFARYVFDQIPHKNTFSYNAMLISYSLHN 104
Query: 45 YYEEIVNLFYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
+ + ++LF + V C + L D ++GK+V+ +++ F
Sbjct: 105 RHGDALDLFSSLASSNLVNNISITCLLKSLSSFTLSDVKLGKEVHGFVLRTGF------- 157
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
D D V N+LI +Y+KC L +S F ++ ++D+VS
Sbjct: 158 -----------------------DADVFVENALITYYSKCYDLDLSRKVFDRMTKRDVVS 194
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
WN+M++GY+ GG E+ L EM + + +PN +++ VL AC Q + + G +H +
Sbjct: 195 WNSMISGYSQGGLYEDCKTLYREM-VDFSGFRPNGVTVVSVLQACGQTQDLAFGMEVHKF 253
Query: 224 VLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVV----------------- 255
++ + + + + CG + + +F+++S +D V
Sbjct: 254 IVDNQVEIDISVCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGLMLHGYVDQS 313
Query: 256 --------------WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
WN++I+ V++ + LDL+R++ +PN VT+ SVL
Sbjct: 314 LELFRGMKTQILSTWNAVITGLVQNNRHEGVLDLVREMQALGFRPNAVTLSSVLSTIAYF 373
Query: 302 AALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
++L G S +V A+IDMY + G ++ ++++F ++LV W +I
Sbjct: 374 SSLKGGKEIHSYAIKIGYHRNIYVATAIIDMYAKSGYLRGAQRVFDQSKDRSLVIWTAII 433
Query: 351 SVYG 354
S Y
Sbjct: 434 SAYA 437
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 87/207 (42%), Gaps = 41/207 (19%)
Query: 12 IVCGVELCAFLGSQLLEVFCNW-TSMMGMYNVL-------GYYEEIVNLFYLMIDKGVRP 63
I+ G+ L ++ Q LE+F T ++ +N + +E +++L M G RP
Sbjct: 300 IISGLMLHGYV-DQSLELFRGMKTQILSTWNAVITGLVQNNRHEGVLDLVREMQALGFRP 358
Query: 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLF 123
+ V + + GK+++ Y I I + N
Sbjct: 359 NAVTLSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRN------------------------ 394
Query: 124 EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNL 183
V ++ID YAK YL+ + F + K + LV W A+++ YA+ G L
Sbjct: 395 ------IYVATAIIDMYAKSGYLRGAQRVFDQSKDRSLVIWTAIISAYAVHGDANLALGL 448
Query: 184 LDEMEMIQTDMQPNTISLSGVLAACAQ 210
EM ++ +QP+ ++ + VLAACA
Sbjct: 449 FHEM--LKQGIQPDPVTFTAVLAACAH 473
>gi|356514095|ref|XP_003525742.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g01580-like [Glycine max]
Length = 700
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 165/347 (47%), Gaps = 56/347 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGV---RPDHFVCPKVYKACSELKDYRVGKDVYD 89
W +++ Y + G + E ++LF+ M + RPD++ K+CS L+ +GK ++
Sbjct: 70 WNALLRSYFLEGKWVETLSLFHQMNADAITEERPDNYTVSIALKSCSGLQKLELGKMIHG 129
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
++ K +D D V ++LI+ Y+KC + +
Sbjct: 130 FLKKKK------------------------------IDNDMFVGSALIELYSKCGQMNDA 159
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F++ ++D+V W +++ GY G E M +++ + P+ ++L +ACA
Sbjct: 160 VKVFTEYPKQDVVLWTSIITGYEQNGSPELALAFFSRMVVLE-QVSPDPVTLVSAASACA 218
Query: 210 QVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
Q+ LG+++HG+V R ++L G + + ++F ++ +D++ W+S
Sbjct: 219 QLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRSAANLFREMPYKDIISWSS 278
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN-- 316
+++ + +G +AL+L ++I ++ N VT++S L AC + L +G N
Sbjct: 279 MVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKHIHKLAVNYG 338
Query: 317 ---------ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
AL+DMY +C + + + +F MP K++VSW V+ S Y
Sbjct: 339 FELDITVSTALMDMYMKCFSPKNAIDLFNRMPKKDVVSWAVLFSGYA 385
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/398 (23%), Positives = 172/398 (43%), Gaps = 76/398 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+ELG +H L ++ F+GS L+E++ WTS++
Sbjct: 121 LELGKMIHGFLKKKKIDNDMFVGSALIELYSKCGQMNDAVKVFTEYPKQDVVLWTSIITG 180
Query: 40 YNVLGYYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
Y G E + F M+ + V PD AC++L D+ +G+ V+ ++ F+
Sbjct: 181 YEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDT 240
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
C+ +L+L+ K G + + L F ++
Sbjct: 241 KLCLANSILNLYGKTGSIRSAANL------------------------------FREMPY 270
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
KD++SW++M+A YA G NL +EM I ++ N +++ L ACA ++ GK
Sbjct: 271 KDIISWSSMVACYADNGAETNALNLFNEM--IDKRIELNRVTVISALRACASSSNLEEGK 328
Query: 219 AIH----GYVLRHHIHLSTACGFVICSC-------SVFNQLSTRDVVVWNSIISAFVRSG 267
IH Y I +STA + C +FN++ +DVV W + S + G
Sbjct: 329 HIHKLAVNYGFELDITVSTALMDMYMKCFSPKNAIDLFNRMPKKDVVSWAVLFSGYAEIG 388
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWN 316
+L + +++ +P+ + +V +L A +L + Q G F+
Sbjct: 389 MAHKSLGVFCNMLSYGTRPDAIALVKILAASSELGIVQQALCLHAFVSKSGFDNNEFIGA 448
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+LI++Y +C +I + K+F M K++V+W+ +I+ YG
Sbjct: 449 SLIELYAKCSSIDNANKVFKGMRRKDVVTWSSIIAAYG 486
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 127/251 (50%), Gaps = 24/251 (9%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
D V L YA+ L +H F + K + WNA+L Y L G E +L +M
Sbjct: 34 HDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEGKWVETLSLFHQM 93
Query: 188 EMIQ-TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTAC 235
T+ +P+ ++S L +C+ ++ ++LGK IHG++ + I L + C
Sbjct: 94 NADAITEERPDNYTVSIALKSCSGLQKLELGKMIHGFLKKKKIDNDMFVGSALIELYSKC 153
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL-RDVIVANVKPNTVTIVSV 294
G + + VF + +DVV+W SII+ + ++G AL R V++ V P+ VT+VS
Sbjct: 154 GQMNDAVKVFTEYPKQDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSA 213
Query: 295 LPACLKLAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
AC +L+ G FV N+++++YG+ G+I+ + +F MP+K++
Sbjct: 214 ASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRSAANLFREMPYKDI 273
Query: 344 VSWNVMISVYG 354
+SW+ M++ Y
Sbjct: 274 ISWSSMVACYA 284
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 144/332 (43%), Gaps = 56/332 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W+SM+ Y G +NLF MIDK + + +AC+ + GK ++
Sbjct: 275 SWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKHIHKLA 334
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
++ FE D V+ +L+D Y KC K +
Sbjct: 335 VNYGFE------------------------------LDITVSTALMDMYMKCFSPKNAID 364
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+++ +KD+VSW + +GYA G + + M+ +P+ I+L +LAA +++
Sbjct: 365 LFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVF--CNMLSYGTRPDAIALVKILAASSEL 422
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
V+ +H +V + I L C + + VF + +DVV W+SII
Sbjct: 423 GIVQQALCLHAFVSKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGMRRKDVVTWSSII 482
Query: 261 SAFVRSGQVVDALDLLRDVIV-ANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA-- 317
+A+ GQ +AL L + ++VKPN VT VS+L AC + +G+ + N
Sbjct: 483 AAYGFHGQGEEALKLFYQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVNEYQ 542
Query: 318 ----------LIDMYGRCGAIQKSRKIFVLMP 339
++D+ GR G + K+ + MP
Sbjct: 543 LMPNTEHYGIMVDLLGRMGELDKALDMINEMP 574
>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
Length = 1175
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 101/402 (25%), Positives = 174/402 (43%), Gaps = 91/402 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
++ G Q+H++L G+ + LL+++ W M+
Sbjct: 260 LQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVA 319
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ + + LF M G+RP+ F P + + C+ ++ +G+ ++ + FE
Sbjct: 320 FGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFE-- 377
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D V+ LID Y+K +L+ + +K+K
Sbjct: 378 ----------------------------SDMYVSGVLIDMYSKYGWLEKARRVLEMLKEK 409
Query: 160 DLVSWNAMLAGY--------ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
D+VSW +M+AGY AL F+ EM + + P+ I L+ ++ CA +
Sbjct: 410 DVVSWTSMIAGYVQHECCKDALAAFK----------EMQKCGIWPDNIGLASAISGCAGI 459
Query: 212 KGVKLGKAIH------GY-----VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ G IH GY + ++L CG + + S F ++ +D + WN ++
Sbjct: 460 NAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLV 519
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTG-S 312
S F +SG +AL + + + VK N T VS L A LA + QG + TG S
Sbjct: 520 SGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHS 579
Query: 313 F---VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
F V NALI +YG+CG+ + ++ F M +N VSWN +I+
Sbjct: 580 FETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIIT 621
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 89/397 (22%), Positives = 170/397 (42%), Gaps = 77/397 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++LG Q+H+ + G E ++ L++++ +WTSM+
Sbjct: 361 IDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAG 420
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y ++ + F M G+ PD+ C+ + R G ++ + + G
Sbjct: 421 YVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSG- 479
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D + N+L++ YA+C ++ + F +I+ K
Sbjct: 480 -----------------------------DVSIWNALVNLYARCGRIREAFSSFEEIEHK 510
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D ++WN +++G+A G EE + M M Q+ ++ N + L+A A + +K GK
Sbjct: 511 DEITWNGLVSGFAQSGLHEEALKVF--MRMDQSGVKHNVFTFVSALSASANLAEIKQGKQ 568
Query: 220 IHGYVLRHHIHLSTACGFVICS----CSVF-------NQLSTRDVVVWNSIISAFVRSGQ 268
IH V++ T G + S C F +++S R+ V WN+II++ + G+
Sbjct: 569 IHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGR 628
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WN 316
++ALDL + +KPN VT + VL AC + + +GL + +
Sbjct: 629 GLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYA 688
Query: 317 ALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ID++GR G + +++K MP + + W ++S
Sbjct: 689 CVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSA 725
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 154/344 (44%), Gaps = 54/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G EE + L+ M GV P +V V +C++
Sbjct: 110 SWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKA------------- 156
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+LF + GR+ G + V N++I Y +C +++
Sbjct: 157 ----------------ELFAQ-GRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAER 199
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +D V++N +++G+A G E + +EM+ + + P+ +++S +LAACA +
Sbjct: 200 VFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQF--SGLSPDCVTISSLLAACASL 257
Query: 212 KGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ G +H Y+ + I L CG V + +FN +VV+WN ++
Sbjct: 258 GDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLML 317
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQGLG 309
AF + + + +L + A ++PN T +L C + ++ G
Sbjct: 318 VAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFE 377
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ +V LIDMY + G ++K+R++ ++ K++VSW MI+ Y
Sbjct: 378 SDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGY 421
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 119/246 (48%), Gaps = 24/246 (9%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
+V N LID Y+K + + F ++ +D VSW AML+GYA G EE L +M
Sbjct: 78 IVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMH-- 135
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVI 239
+ + P LS VL++C + + G+ IH +H I L CG
Sbjct: 136 RAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFR 195
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ VF + RD V +N++IS + G AL++ ++ + + P+ VTI S+L AC
Sbjct: 196 LAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACA 255
Query: 300 KLAALPQGLGTGSFVWNA-----------LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
L L +G S+++ A L+D+Y +CG ++ + IF N+V WN+
Sbjct: 256 SLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNL 315
Query: 349 MISVYG 354
M+ +G
Sbjct: 316 MLVAFG 321
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 303 ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
A+ +GLG V N LID+Y + G + +R++F + ++ VSW M+S Y
Sbjct: 68 AVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYA 119
>gi|224132434|ref|XP_002328268.1| predicted protein [Populus trichocarpa]
gi|222837783|gb|EEE76148.1| predicted protein [Populus trichocarpa]
Length = 749
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 102/349 (29%), Positives = 163/349 (46%), Gaps = 63/349 (18%)
Query: 33 WTSMMGMYNVLGYYEEIVNL---FYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
W+ M+G Y L + E V L +++ G+ PD V V KAC+ +D G+ V+
Sbjct: 217 WSVMIGGY--LQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKACASSRDVCTGRLVHG 274
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
+I F D D V NSLID Y+KC+ +
Sbjct: 275 LVIHRGF------------------------------DCDLFVENSLIDMYSKCKDAGSA 304
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM--EMIQTDMQPNTISLSGVLAA 207
F++I Q++ VSWN+ML+G+ L E +L+ M E ++TD ++L +L
Sbjct: 305 FKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETD----EVTLVNILQI 360
Query: 208 CAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVW 256
C K+IH ++R I C + + VF ++ RDVV W
Sbjct: 361 CKYFVHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSW 420
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALP 305
+++IS F G+ +A+ + +++ VKPN +TI+++L AC A A+
Sbjct: 421 STMISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIR 480
Query: 306 QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
QG + V A++DMY +CG I SR+ F + KN+V+W+ MI+ YG
Sbjct: 481 QGFASEVTVGTAVVDMYSKCGEILASRRAFDQLALKNIVTWSAMIAAYG 529
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 136/252 (53%), Gaps = 28/252 (11%)
Query: 127 DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDE 186
+ + LV ++LID YAKC ++++ F++++++D+VSW+ M++G+A G +E + E
Sbjct: 383 EANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQE 442
Query: 187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTAC 235
M+ + ++PN I++ +L AC+ +K K HG +R + + + C
Sbjct: 443 MD--RDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGFASEVTVGTAVVDMYSKC 500
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
G ++ S F+QL+ +++V W+++I+A+ +G +AL L ++ +KPN VT +SVL
Sbjct: 501 GEILASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEMKRHGLKPNPVTTLSVL 560
Query: 296 PACLKLAALPQGLG------------TGSFVWNALIDMYGRCGAIQKSRKIFVLMPH--K 341
AC + +GL G ++ ++DM GR G + + ++ MPH K
Sbjct: 561 AACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDMLGRAGKLDTAIEVIKAMPHNLK 620
Query: 342 NLVS-WNVMISV 352
N S W ++S
Sbjct: 621 NGASIWGSLLSA 632
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 79/345 (22%), Positives = 149/345 (43%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRP-DHFVCPKVYKACSELKDYRVGKDVYDY 90
NW + + G ++E+V+ ++ + G++ D V P + KA S L +R GK ++
Sbjct: 14 NWILRIKESSANGKWQEVVSHYHEIKKAGIQTVDVSVFPPILKAWSFLS-HRHGKSLHAC 72
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+I F+ + ++ +I+CG +I +F M
Sbjct: 73 LIKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMR----------------------- 109
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+ +D VSWN ++ G+ G V L +PN ++ V+ AC
Sbjct: 110 ------RSRDSVSWNILIHGHLDNGAL--VAGLWWFTNARVAGFEPNISTMVLVIQACRI 161
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVI----------CSCSVFNQLSTRDVVVWNSII 260
+ G +HGY+++ ++ + C+ +F+++ +DV+ W+ +I
Sbjct: 162 LGTKHDGLILHGYLIKSGFWAISSVQNSLLSMYVDADMECARELFDEMHEKDVIAWSVMI 221
Query: 261 SAFVRSGQVVDALDLLRD-VIVANVKPNTVTIVSVLPACLKLA-----------ALPQGL 308
+++ + L + R V+V ++P+ V +VSVL AC + +G
Sbjct: 222 GGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGF 281
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
FV N+LIDMY +C + K+F + +N VSWN M+S +
Sbjct: 282 DCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNNVSWNSMLSGF 326
>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like, partial [Brachypodium distachyon]
Length = 745
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 101/342 (29%), Positives = 160/342 (46%), Gaps = 64/342 (18%)
Query: 40 YNVL-------GYYEEIVNLFYLMIDK-GVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
YN+L G+ E+ ++LF M+D V PD K+CS + D VG+ V Y
Sbjct: 138 YNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRGVQAYA 197
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F ++D F V NSLI YA C + +H
Sbjct: 198 FKRGF---------MVDQF---------------------VLNSLIHMYASCGDVVAAHV 227
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ K +++WNAM+AGY G +EV + M ++ + ++L V AC ++
Sbjct: 228 LFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPF--DEVTLLSVATACGRL 285
Query: 212 KGVKLGKAIHGY-----VLRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
LG+ I Y +LR +L+TA CG + + +F+++ +RDVV W+++
Sbjct: 286 GDANLGQWIAEYAEEKGMLRSR-NLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAM 344
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW---- 315
IS + +S + +AL + ++ V PN VT+VSVL AC L AL G S++
Sbjct: 345 ISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDL 404
Query: 316 -------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
AL+D Y +CG I+ + K F MP +N +W +I
Sbjct: 405 PLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALI 446
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 150/344 (43%), Gaps = 56/344 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y G ++E+V +F M++ D V AC L D +G+ + +Y
Sbjct: 240 WNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAE 299
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
G+ + + +L+D YAKC L +
Sbjct: 300 E--------------------------KGMLRSRN----LATALVDMYAKCGELDKARRL 329
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ +D+V+W+AM++GY E + +EM+ T++ PN +++ VL+ACA +
Sbjct: 330 FDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQ--GTEVNPNDVTMVSVLSACAVLG 387
Query: 213 GVKLGKAIHGYVLRHHIHLSTACG------FVICSC-----SVFNQLSTRDVVVWNSIIS 261
++ GK +H Y+ R + L+ G + C C F + R+ W ++I
Sbjct: 388 ALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIK 447
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC----------LKLAALPQGLGTG 311
+G+ +AL+L ++ AN++P VT + VL AC ++ Q G
Sbjct: 448 GMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGIC 507
Query: 312 SFV--WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ + ++D+ GR G I ++ + MP N V W ++S
Sbjct: 508 PRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSA 551
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 113/213 (53%), Gaps = 23/213 (10%)
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
S+N ++ + G E+ +L EM + T + P+ +++ + +C+++ + +G+ +
Sbjct: 137 SYNILIRSFLRAGHPEDALHLFVEM-LDDTAVSPDQHTVANTVKSCSRMCDLSVGRGVQA 195
Query: 223 Y-----------VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
Y VL IH+ +CG V+ + +F+ + + V+ WN++I+ +V++G +
Sbjct: 196 YAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKE 255
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALID 320
+++ + ++ + VT++SV AC +L A +G+ + AL+D
Sbjct: 256 VVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVD 315
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
MY +CG + K+R++F M +++V+W+ MIS Y
Sbjct: 316 MYAKCGELDKARRLFDRMHSRDVVAWSAMISGY 348
>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/395 (24%), Positives = 172/395 (43%), Gaps = 74/395 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ELG VHA +++ G F+ + LL ++ +W +M+
Sbjct: 187 IELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITG 246
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ Y + +LF M+ +GV PD V KA L+D K+V Y + + + N
Sbjct: 247 FTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSN 306
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V L+D+ KCG ++ +F N+ I C+F+
Sbjct: 307 TLVGTALIDMNSKCGSLQEARSIF---------NSHFIT------------CRFN----- 340
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
WNAM++GY GF E+ L +M Q D+ + + V A A +K + LGK
Sbjct: 341 --APWNAMISGYLRSGFNEKALELF--AKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKK 396
Query: 220 IHGYVLR-----HHIHLSTACGFVICSC-------SVFNQLSTRDVVVWNSIISAFVRSG 267
+H ++ +++ +S A C VFN++ RD++ W S+++A+ +
Sbjct: 397 VHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCS 456
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWN 316
+ A+++ ++ + PN T SVL +C L L G L + +
Sbjct: 457 EWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIES 516
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
AL+DMY +CG + ++K+F + + + VSW +I+
Sbjct: 517 ALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIA 551
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/342 (23%), Positives = 144/342 (42%), Gaps = 55/342 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y G+ E+ + LF M + DH+ V+ A + LK +GK V+ I
Sbjct: 343 WNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAI 402
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
E N ++N++ + YAKC L+
Sbjct: 403 KSGLEVNYVS-----------------------------ISNAVANAYAKCGSLEDVRKV 433
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F++++ +DL+SW +++ Y+ ++ + M + PN + S VL +CA +
Sbjct: 434 FNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRA--EGIAPNQFTFSSVLVSCANLC 491
Query: 213 GVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ G+ +HG + + + + CG + + VFN++S D V W +II+
Sbjct: 492 LLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIA 551
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC------------LKLAALPQGLG 309
+ G V DAL L R ++ V+PN VT + VL AC KL GL
Sbjct: 552 GHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLV 611
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ ++D+ R G + + + MP N + W ++
Sbjct: 612 PEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLL 653
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 82/347 (23%), Positives = 152/347 (43%), Gaps = 57/347 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT ++ G + + F M +G+ PD F + + C L +G V+ +
Sbjct: 138 SWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQI 197
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F TS F V+ +L++ YAK + ++ S+
Sbjct: 198 VIRGF----------------------TSHTF--------VSTALLNMYAKLQEIEDSYK 227
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ + + ++VSWNAM+ G+ + +L + M+ + P+ + GV A +
Sbjct: 228 VFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLF--LRMMGEGVTPDAQTFIGVAKAIGML 285
Query: 212 KGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQ--LSTRDVVVWNS 258
+ V K + GY L I +++ CG + + S+FN ++ R WN+
Sbjct: 286 RDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNA 345
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA-----CLKLA------ALPQG 307
+IS ++RSG AL+L + ++ + T SV A CL L A+ G
Sbjct: 346 MISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSG 405
Query: 308 LGTGSF-VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L + NA+ + Y +CG+++ RK+F M ++L+SW +++ Y
Sbjct: 406 LEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAY 452
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 113/244 (46%), Gaps = 26/244 (10%)
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
N + Y+KC + + F ++ Q++ SW ++AG A G + EM+
Sbjct: 109 NHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQ--SQG 166
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVL----RHHIHLSTA-------CGFVICSC 242
+ P+ + SG+L C + ++LG +H ++ H +STA + S
Sbjct: 167 IFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSY 226
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
VFN ++ +VV WN++I+ F + +DA DL ++ V P+ T + V A L
Sbjct: 227 KVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLR 286
Query: 303 -----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFV--LMPHKNLVSWNVM 349
AL G+ + + V ALIDM +CG++Q++R IF + + WN M
Sbjct: 287 DVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAM 346
Query: 350 ISVY 353
IS Y
Sbjct: 347 ISGY 350
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 97/214 (45%), Gaps = 29/214 (13%)
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
++ +A+ +A G + + +++ +TD L +L C + +K K +H
Sbjct: 37 ITHSAIQKPFATSGIKTP-----NSVKVDKTDSHLQIQPLVDLLRDCVDARFLKQAKTVH 91
Query: 222 GYVLR-----HH--------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
G++L+ HH H + C + +C +F+Q+S R+ W +I+ +G
Sbjct: 92 GFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGL 151
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNA 317
+D + ++ + P+ +L C+ L ++ +G + +FV A
Sbjct: 152 FLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTA 211
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
L++MY + I+ S K+F M N+VSWN MI+
Sbjct: 212 LLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMIT 245
>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Vitis vinifera]
Length = 515
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/311 (27%), Positives = 156/311 (50%), Gaps = 42/311 (13%)
Query: 63 PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGL 122
PD F P V K C+ L Y +GK V+ + + N ++ L+++++KC ++ +
Sbjct: 89 PDKFTFPFVVKXCAGLMCYNLGKQVHGHAFKFGPKSNTVIENSLVEMYVKCDSLDDAHRV 148
Query: 123 FEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVT 181
FEEM ++D + N+LI + + ++ + F +++ K + SW A+++GYA G
Sbjct: 149 FEEMTERDAVSWNTLISGHVRLGQMRRARAIFEELQDKTIFSWTAIVSGYARIGCHAVAL 208
Query: 182 NLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFV--I 239
M+M+ D++ + ISL VL ACAQ+ ++LGK IH Y + GF+ I
Sbjct: 209 EFFRRMQMV--DIELDEISLVSVLPACAQLGALELGKWIHIY--------ADKAGFLRDI 258
Query: 240 CSCS-----------------VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
C C+ +F++++ RDV+ W+++I G+ +A++L +++ A
Sbjct: 259 CVCNALIEVYAKRGSMDEGRRLFHKMNERDVISWSTMIVGLANHGRAREAIELFQEMQKA 318
Query: 283 NVKPNTVTIVSVLPACLKLAALPQGLG------------TGSFVWNALIDMYGRCGAIQK 330
V+PN +T V +L AC L +GLG G + L+++ G G + +
Sbjct: 319 KVEPNIITFVGLLSACAHAGLLNEGLGYFESMERDDNIEPGVEHYGCLVNLLGLSGRLDQ 378
Query: 331 SRKIFVLMPHK 341
+ ++ MP K
Sbjct: 379 ALELIKKMPMK 389
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 93/208 (44%), Gaps = 53/208 (25%)
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSV 244
P+ + V+ CA + LGK +HG+ + + + C + + V
Sbjct: 89 PDKFTFPFVVKXCAGLMCYNLGKQVHGHAFKFGPKSNTVIENSLVEMYVKCDSLDDAHRV 148
Query: 245 FNQLSTRDVVVWNSIISAFVRSGQVVDA-------------------------------L 273
F +++ RD V WN++IS VR GQ+ A L
Sbjct: 149 FEEMTERDAVSWNTLISGHVRLGQMRRARAIFEELQDKTIFSWTAIVSGYARIGCHAVAL 208
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTGSF-----VWNALIDMY 322
+ R + + +++ + +++VSVLPAC +L AL G F V NALI++Y
Sbjct: 209 EFFRRMQMVDIELDEISLVSVLPACAQLGALELGKWIHIYADKAGFLRDICVCNALIEVY 268
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ G++ + R++F M ++++SW+ MI
Sbjct: 269 AKRGSMDEGRRLFHKMNERDVISWSTMI 296
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 32/180 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+++ Y +G + + F M + D V AC++L +GK ++ Y
Sbjct: 190 SWTAIVSGYARIGCHAVALEFFRRMQMVDIELDEISLVSVLPACAQLGALELGKWIHIYA 249
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F + CV L++++ K G M+ LF +M+
Sbjct: 250 DKAGFLRDICVCNALIEVYAKRGSMDEGRRLFHKMN------------------------ 285
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
++D++SW+ M+ G A G E L EM+ + ++PN I+ G+L+ACA
Sbjct: 286 ------ERDVISWSTMIVGLANHGRAREAIELFQEMQ--KAKVEPNIITFVGLLSACAHA 337
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/124 (20%), Positives = 60/124 (48%), Gaps = 16/124 (12%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN-----VKPNTVTIVSVLPAC 298
+F +++ + ++N++I A+ + + A+ + + ++ + P+ T V+ C
Sbjct: 42 LFKRVADPNAFLYNAMIRAYKHNKVYILAITVHKQMLGHSHGENPXFPDKFTFPFVVKXC 101
Query: 299 LKL-----------AALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
L A G + + + N+L++MY +C ++ + ++F M ++ VSWN
Sbjct: 102 AGLMCYNLGKQVHGHAFKFGPKSNTVIENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWN 161
Query: 348 VMIS 351
+IS
Sbjct: 162 TLIS 165
>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
Length = 906
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 119/465 (25%), Positives = 201/465 (43%), Gaps = 118/465 (25%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G +VH+++ L LG+ LL +F +W ++G Y
Sbjct: 113 GSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAK 172
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDV--------------- 87
GY++E +NL++ M+ G+RPD + P V + C L D G++V
Sbjct: 173 AGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDV 232
Query: 88 -------------------------------YDYMISIKFEGNACVKRPLL-----DLFI 111
++ MIS FE + C++ L + F+
Sbjct: 233 VNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFV 292
Query: 112 KCGRMEITSGLF--EEMDQDFL------------------VNNSLIDFYAKCRYLKVSHC 151
M +TS + E + + L VNNSLI ++ +
Sbjct: 293 DPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEM 352
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FSK++ KDLVSW AM++GY G E+ ME + P+ I+++ VL+ACA +
Sbjct: 353 VFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIME--HEGVVPDEITIASVLSACAGL 410
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ G +H + R I + + C + + VF+++ ++V+ W SII
Sbjct: 411 GLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSII 470
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLG 309
+ + +AL + +I++ +KPN+VT+VSVL AC ++ AL GLG
Sbjct: 471 LGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLG 529
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
F+ NAL+DMY RCG ++ + F K++ SWN++++ Y
Sbjct: 530 FDGFLPNALLDMYVRCGRMEPAWNQFNSC-EKDVASWNILLTGYA 573
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 87/358 (24%), Positives = 156/358 (43%), Gaps = 58/358 (16%)
Query: 5 IQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPD 64
IQ+H+ + C E + +WT+M+ Y G E+ V + +M +GV PD
Sbjct: 338 IQMHSS-VGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPD 396
Query: 65 HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFE 124
V AC+ L LLD I +GL
Sbjct: 397 EITIASVLSACAGLG--------------------------LLDKGIMLHEFADRTGLTS 430
Query: 125 EMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLL 184
+ +V NSLID Y+KCR + + F +I K+++SW +++ G L E
Sbjct: 431 YV----IVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFF 486
Query: 185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI-----------HLST 233
+M + ++PN+++L VL+ACA++ + GK IH + LR + +
Sbjct: 487 QQMIL---SLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYV 543
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
CG + + + FN +DV WN +++ + + G+ A++L +I ++V P+ +T S
Sbjct: 544 RCGRMEPAWNQFNSCE-KDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTS 602
Query: 294 VLPACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFVLMP 339
+L AC + + GL + + +++D+ GR G ++ + + MP
Sbjct: 603 LLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMP 660
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 94/211 (44%), Gaps = 24/211 (11%)
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
N+++ L G E+ LD M+ +Q ++ T +L C + G +H YV
Sbjct: 63 NSLILELCLKGDLEKALIHLDSMQELQVSVEEET--YIALLRLCEWKRAASEGSRVHSYV 120
Query: 225 LRHHIHLSTACGFVICSC-----------SVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
+ L G + S VF +++ RD+ WN ++ + ++G +AL
Sbjct: 121 SKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEAL 180
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMY 322
+L ++ ++P+ T VL C L L +G + V NALI MY
Sbjct: 181 NLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMY 240
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+CG I +R +F MP ++ +SWN MIS Y
Sbjct: 241 VKCGDIFSARLVFDRMPRRDRISWNAMISGY 271
Score = 38.1 bits (87), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 23/148 (15%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYN---------------VLGYYEE 48
G ++HAH + G+ FL + LL+++ M +N + GY ++
Sbjct: 516 GKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCEKDVASWNILLTGYAQQ 575
Query: 49 -----IVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
V LF+ MI+ V PD + ACS G + ++ M KF +K
Sbjct: 576 GKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESM-EHKFHIAPNLK 634
Query: 104 R--PLLDLFIKCGRMEITSGLFEEMDQD 129
++DL + GR+E ++M D
Sbjct: 635 HYASVVDLLGRAGRLEDAYEFIKKMPID 662
>gi|125590818|gb|EAZ31168.1| hypothetical protein OsJ_15267 [Oryza sativa Japonica Group]
Length = 586
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/316 (28%), Positives = 148/316 (46%), Gaps = 56/316 (17%)
Query: 60 GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEIT 119
G RPD + P KAC+ R+G + + C + + GR+
Sbjct: 112 GARPDGYTLPAALKACA-----RLGGGLRE----------GCQAHAVAEKAGFLGRVP-- 154
Query: 120 SGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREE 179
V N+L+ FY C + F ++ ++D+VSW A+L+ + GG E
Sbjct: 155 ------------VQNALVTFYGACGQCGDARKVFDEMAERDVVSWTALLSAFTRGGMFME 202
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACG--- 236
+L EM D+ PN ++L+ VL AC + + GKA+HG+ R L+ G
Sbjct: 203 ALGVLAEM-----DVTPNEVTLASVLVACGNLGTARAGKAVHGWYFRREKELNLIVGNAL 257
Query: 237 ---FVIC-----SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288
+V C + VF+ L RD+V W +IS V+ + +AL++ + ++ VKP+
Sbjct: 258 LDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVFNAMQISGVKPDK 317
Query: 289 VTIVSVLPACLKLAALPQGLGTGSFV------WN-----ALIDMYGRCGAIQKSRKIFVL 337
V + +VL AC L AL G ++ W+ +++DMY +CG + + IF
Sbjct: 318 VVLSTVLSACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQE 377
Query: 338 MPHKNLVSWNVMISVY 353
MP KN+ SWN +I+ +
Sbjct: 378 MPLKNVSSWNALINGF 393
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/333 (24%), Positives = 151/333 (45%), Gaps = 58/333 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+++ + G + E + + M V P+ V AC L R GK V+ +
Sbjct: 186 SWTALLSAFTRGGMFMEALGVLAEM---DVTPNEVTLASVLVACGNLGTARAGKAVHGWY 242
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
E + + +V N+L+D Y KC L ++
Sbjct: 243 FR------------------------------REKELNLIVGNALLDMYVKCEKLDLARR 272
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +D+VSW M++G E + + M++ + ++P+ + LS VL+ACA +
Sbjct: 273 VFDMLLARDIVSWTVMISGLVQCKRPSEALEVFNAMQI--SGVKPDKVVLSTVLSACASL 330
Query: 212 KGVKLGKAIHGYVLRHHI----HLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
++ G+ +H Y+ R I H+ T+ CG + + S+F ++ ++V WN++I
Sbjct: 331 GALESGRWVHEYIERKGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALI 390
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----LGTGSFV- 314
+ F G+ +ALD ++ + + PN VT ++VL AC + +G L T S+
Sbjct: 391 NGFALHGRGREALDCFDRMVASGLHPNEVTFITVLGACCHSGLVQEGRQLFELMTKSYKL 450
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMPHK 341
+ ++D+ GR G IQ++ + MP +
Sbjct: 451 SPWEDHYGCMVDLLGRAGLIQEAYDVIKAMPMR 483
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 17/115 (14%)
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVAN-----VKPNTVTIVSVLPACLKLAA-LPQGLG 309
+N++IS+ +G A ++VA+ +P+ T+ + L AC +L L +G
Sbjct: 80 FNALISSLTHAGDPSAAFRAFALLLVASGAGAGARPDGYTLPAALKACARLGGGLREGCQ 139
Query: 310 TGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ V NAL+ YG CG +RK+F M +++VSW ++S +
Sbjct: 140 AHAVAEKAGFLGRVPVQNALVTFYGACGQCGDARKVFDEMAERDVVSWTALLSAF 194
>gi|118488304|gb|ABK95971.1| unknown [Populus trichocarpa]
Length = 749
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 102/349 (29%), Positives = 163/349 (46%), Gaps = 63/349 (18%)
Query: 33 WTSMMGMYNVLGYYEEIVNL---FYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
W+ M+G Y L + E V L +++ G+ PD V V KAC+ +D G+ V+
Sbjct: 217 WSVMIGGY--LQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKACASSRDVCTGRLVHG 274
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
+I F D D V NSLID Y+KC+ +
Sbjct: 275 LVIHRGF------------------------------DCDLFVENSLIDMYSKCKDAGSA 304
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM--EMIQTDMQPNTISLSGVLAA 207
F++I Q++ VSWN+ML+G+ L E +L+ M E ++TD ++L +L
Sbjct: 305 FKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETD----EVTLVNILQI 360
Query: 208 CAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVW 256
C K+IH ++R I C + + VF ++ RDVV W
Sbjct: 361 CKYFVHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSW 420
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALP 305
+++IS F G+ +A+ + +++ VKPN +TI+++L AC A A+
Sbjct: 421 STMISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIR 480
Query: 306 QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
QG + V A++DMY +CG I SR+ F + KN+V+W+ MI+ YG
Sbjct: 481 QGFASEVTVGTAVVDMYSKCGEILASRRAFDQLALKNIVTWSAMIAAYG 529
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 135/252 (53%), Gaps = 28/252 (11%)
Query: 127 DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDE 186
+ + LV ++LID YAKC ++++ F++++++D+VSW+ M++G+A G +E + E
Sbjct: 383 EANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQE 442
Query: 187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTAC 235
M+ + ++PN I++ +L AC+ +K K HG +R + + + C
Sbjct: 443 MD--RDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGFASEVTVGTAVVDMYSKC 500
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
G ++ S F+QL+ +++V W+++I+A+ +G +AL L ++ +KPN VT +SVL
Sbjct: 501 GEILASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEMKRHGLKPNPVTTLSVL 560
Query: 296 PACLKLAALPQGLG------------TGSFVWNALIDMYGRCGAIQKSRKIFVLMPH--K 341
AC + +GL G ++ ++DM GR G + + ++ MP K
Sbjct: 561 AACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDMLGRAGKLDTAIEVIKAMPDNLK 620
Query: 342 NLVS-WNVMISV 352
N S W ++S
Sbjct: 621 NGASIWGSLLSA 632
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 79/345 (22%), Positives = 149/345 (43%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRP-DHFVCPKVYKACSELKDYRVGKDVYDY 90
NW + + G ++E+V+ ++ + G++ D V P + KA S L +R GK ++
Sbjct: 14 NWILRIKESSANGKWQEVVSHYHEIKKAGIQTVDVSVFPPILKAWSFLS-HRHGKSLHAC 72
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+I F+ + ++ +I+CG +I +F M
Sbjct: 73 LIKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMR----------------------- 109
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+ +D VSWN ++ G+ G V L +PN ++ V+ AC
Sbjct: 110 ------RSRDSVSWNILIHGHLDNGAL--VAGLWWFTNARVAGFEPNISTMVLVIQACRI 161
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVI----------CSCSVFNQLSTRDVVVWNSII 260
+ G +HGY+++ ++ + C+ +F+++ +DV+ W+ +I
Sbjct: 162 LGTKHDGLILHGYLIKSGFWAISSVQNSLLSMYVDADMECARELFDEMHEKDVIAWSVMI 221
Query: 261 SAFVRSGQVVDALDLLRD-VIVANVKPNTVTIVSVLPACLKLA-----------ALPQGL 308
+++ + L + R V+V ++P+ V +VSVL AC + +G
Sbjct: 222 GGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGF 281
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
FV N+LIDMY +C + K+F + +N VSWN M+S +
Sbjct: 282 DCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNNVSWNSMLSGF 326
>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 975
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 138/251 (54%), Gaps = 24/251 (9%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
+ D LV N+ + YAKC L + F ++ K + SWNA++ G+ GF + +L
Sbjct: 432 IQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLY- 490
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-----------A 234
+ M + ++P+ +++ +L+ACA++K + GK IHG +LR+ L
Sbjct: 491 -LLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQ 549
Query: 235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV 294
CG ++ + F+ + +++V WN++I+ F ++ DALD+ ++ + + P+ ++I+
Sbjct: 550 CGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGA 609
Query: 295 LPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
L AC +++AL G L SFV +LIDMY +CG +++S+ IF + K
Sbjct: 610 LGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGE 669
Query: 344 VSWNVMISVYG 354
V+WNV+I+ YG
Sbjct: 670 VTWNVLITGYG 680
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/357 (22%), Positives = 168/357 (47%), Gaps = 64/357 (17%)
Query: 8 HAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFV 67
+A + CG+E ++ +W +++G + G+ + ++L+ LM G+ PD F
Sbjct: 454 YAEGVFCGMES---------KMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFT 504
Query: 68 CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD 127
+ AC+ LK GK+++ M+ FE + + L+ L+++CG++ + F+ M
Sbjct: 505 IASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNM- 563
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
++K+LV WN M+ G++ F + ++ +M
Sbjct: 564 -----------------------------EEKNLVCWNTMINGFSQNEFPFDALDMFHQM 594
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACG 236
+ + + P+ IS+ G L AC+QV ++LGK +H + ++ H I + CG
Sbjct: 595 --LSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCG 652
Query: 237 FVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296
+ S ++F+++ + V WN +I+ + G A++L + + A +P++VT +++L
Sbjct: 653 CMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLT 712
Query: 297 ACLKLAALPQGL----------GTGSFV--WNALIDMYGRCGAIQKSRKIFVLMPHK 341
AC + +GL G + + ++DM GR G + ++ ++ +P K
Sbjct: 713 ACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDK 769
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 154/343 (44%), Gaps = 56/343 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +++ Y + + V +F MI PD+F P V KAC + D R+G+ V+ +
Sbjct: 163 WNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFA 222
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ K L D+F V N+LI Y K +++ +
Sbjct: 223 LKTKV---------LSDVF---------------------VGNALIAMYGKFGFVESAVK 252
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K+ Q++LVSWN+++ G EE L + + P+ ++ V+ CA+
Sbjct: 253 VFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQ 312
Query: 212 KGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
V+LG HG L+ + + + CG+ +C V + ++V+ WNS+I
Sbjct: 313 GEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGY-LCEARVLFDTNEKNVISWNSMI 371
Query: 261 SAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPAC------LKLA-----ALPQG- 307
+ + A +LLR + + + VK N VT+++VLP C LKL AL G
Sbjct: 372 GGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGF 431
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ + V NA + Y +CG++ + +F M K + SWN +I
Sbjct: 432 IQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALI 474
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 129/251 (51%), Gaps = 28/251 (11%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGG-FREEVTNLLDE 186
D ++ L+ Y+ C S F+ ++K+L WNA+L+GY FR+ V ++
Sbjct: 127 NDVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEM 186
Query: 187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTAC 235
+ + T+ P+ +L V+ AC V V+LG+A+HG+ L+ I +
Sbjct: 187 ISL--TEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKF 244
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN--VKPNTVTIVS 293
GFV + VF+++ R++V WNS++ A + +G ++ L + ++ + + P+ T+V+
Sbjct: 245 GFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVT 304
Query: 294 VLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
V+P C + AL GL V ++L+DMY +CG + ++R +F KN
Sbjct: 305 VIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFD-TNEKN 363
Query: 343 LVSWNVMISVY 353
++SWN MI Y
Sbjct: 364 VISWNSMIGGY 374
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 24/171 (14%)
Query: 204 VLAACAQVKGVKLGKAIHGYV------------LRHHIHLSTACGFVICSCSVFNQLSTR 251
+L C + K +++G+ IH ++ + + + + C SC VFN +
Sbjct: 99 LLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRK 158
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVLPAC-----LKLAALP 305
++ +WN+++S ++R+ DA+ + ++I + P+ T+ V+ AC ++L
Sbjct: 159 NLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAV 218
Query: 306 QGLGTGS------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
G + FV NALI MYG+ G ++ + K+F MP +NLVSWN ++
Sbjct: 219 HGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVM 269
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/293 (18%), Positives = 117/293 (39%), Gaps = 66/293 (22%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G ++H ++ G EL F+ L+ ++ W +M+ ++
Sbjct: 521 GKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQ 580
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+ + +++F+ M+ + PD ACS++ R+GK+++ + + ++ V
Sbjct: 581 NEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFV 640
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L+D++ KCG ME + +F+ ++ K V
Sbjct: 641 TCSLIDMYAKCGCMEQSQNIFD------------------------------RVHLKGEV 670
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+WN ++ GY + G + L M+ +P++++ +L AC V G G
Sbjct: 671 TWNVLITGYGIHGHGRKAIELFKSMQ--NAGFRPDSVTFIALLTACNHAGLVAEGLEYLG 728
Query: 223 YV---------LRHH---IHLSTACGFVICSCSVFNQLSTR-DVVVWNSIISA 262
+ L H+ + + G + + + N+L + D +W+S++S+
Sbjct: 729 QMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSS 781
>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/395 (24%), Positives = 172/395 (43%), Gaps = 74/395 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ELG VHA +++ G F+ + LL ++ +W +M+
Sbjct: 187 IELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITG 246
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ Y + +LF M+ +GV PD V KA L+D K+V Y + + + N
Sbjct: 247 FTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSN 306
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V L+D+ KCG ++ +F N+ I C+F+
Sbjct: 307 TLVGTALIDMNSKCGSLQEARSIF---------NSHFIT------------CRFN----- 340
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
WNAM++GY GF E+ L +M Q D+ + + V A A +K + LGK
Sbjct: 341 --APWNAMISGYLRSGFNEKALELF--AKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKK 396
Query: 220 IHGYVLR-----HHIHLSTACGFVICSC-------SVFNQLSTRDVVVWNSIISAFVRSG 267
+H ++ +++ +S A C VFN++ RD++ W S+++A+ +
Sbjct: 397 VHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCS 456
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWN 316
+ A+++ ++ + PN T SVL +C L L G L + +
Sbjct: 457 EWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIES 516
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
AL+DMY +CG + ++K+F + + + VSW +I+
Sbjct: 517 ALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIA 551
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 81/342 (23%), Positives = 144/342 (42%), Gaps = 55/342 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y G+ E+ + LF M + DH+ V+ A + LK +GK V+ I
Sbjct: 343 WNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAI 402
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
E N ++N++ + YAKC L+
Sbjct: 403 KSGLEVNYVS-----------------------------ISNAVANAYAKCGSLEDVRKV 433
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F++++ +DL+SW +++ Y+ ++ + M + PN + S VL +CA +
Sbjct: 434 FNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRA--EGIAPNQFTFSSVLVSCANLC 491
Query: 213 GVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ G+ +HG + + + + CG + + VFN++S D V W +II+
Sbjct: 492 LLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIA 551
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC------------LKLAALPQGLG 309
+ G V DAL L R ++ V+PN VT + VL AC KL GL
Sbjct: 552 GHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLV 611
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ ++D+ R G + + + MP N + W ++
Sbjct: 612 PEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLL 653
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 82/347 (23%), Positives = 152/347 (43%), Gaps = 57/347 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT ++ G + + F M +G+ PD F + + C L +G V+ +
Sbjct: 138 SWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQI 197
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F TS F V+ +L++ YAK + ++ S+
Sbjct: 198 VIRGF----------------------TSHTF--------VSTALLNMYAKLQEIEDSYK 227
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ + + ++VSWNAM+ G+ + +L + M+ + P+ + GV A +
Sbjct: 228 VFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLF--LRMMGEGVTPDAQTFIGVAKAIGML 285
Query: 212 KGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQ--LSTRDVVVWNS 258
+ V K + GY L I +++ CG + + S+FN ++ R WN+
Sbjct: 286 RDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNA 345
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA-----CLKLA------ALPQG 307
+IS ++RSG AL+L + ++ + T SV A CL L A+ G
Sbjct: 346 MISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSG 405
Query: 308 LGTGSF-VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L + NA+ + Y +CG+++ RK+F M ++L+SW +++ Y
Sbjct: 406 LEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAY 452
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 113/244 (46%), Gaps = 26/244 (10%)
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
N + Y+KC + + F ++ Q++ SW ++AG A G + EM+
Sbjct: 109 NHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQ--SQG 166
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVL----RHHIHLSTA-------CGFVICSC 242
+ P+ + SG+L C + ++LG +H ++ H +STA + S
Sbjct: 167 IFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSY 226
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
VFN ++ +VV WN++I+ F + +DA DL ++ V P+ T + V A L
Sbjct: 227 KVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLR 286
Query: 303 -----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFV--LMPHKNLVSWNVM 349
AL G+ + + V ALIDM +CG++Q++R IF + + WN M
Sbjct: 287 DVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAM 346
Query: 350 ISVY 353
IS Y
Sbjct: 347 ISGY 350
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 97/214 (45%), Gaps = 29/214 (13%)
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
++ +A+ +A G + + +++ +TD L +L C + +K K +H
Sbjct: 37 ITHSAIQKPFATSGIKTP-----NSVKVDKTDSHLQIQPLVDLLRDCVDARFLKQAKTVH 91
Query: 222 GYVLR-----HH--------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
G++L+ HH H + C + +C +F+Q+S R+ W +I+ +G
Sbjct: 92 GFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGL 151
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNA 317
+D + ++ + P+ +L C+ L ++ +G + +FV A
Sbjct: 152 FLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTA 211
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
L++MY + I+ S K+F M N+VSWN MI+
Sbjct: 212 LLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMIT 245
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/362 (26%), Positives = 162/362 (44%), Gaps = 86/362 (23%)
Query: 47 EEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKF-EGNACVKRP 105
E ++L+ + G D F P + KA S+L +G +++ F + ++
Sbjct: 97 ENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGLEIHGLASKFGFFHADPFIQSA 156
Query: 106 LLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWN 165
L+ ++ CGR+ MD FL F K+ +D+V+WN
Sbjct: 157 LIAMYAACGRI---------MDARFL---------------------FDKMSHRDVVTWN 186
Query: 166 AMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH---- 221
M+ GY+ + V L +EM+ T +P+ I L VL+ACA + GKAIH
Sbjct: 187 IMIDGYSQNAHYDHVLKLYEEMKTSGT--EPDAIILCTVLSACAHAGNLSYGKAIHQFIK 244
Query: 222 --GYVLRHHIHLS-----TACGFVICSCSVFNQLST------------------------ 250
G+ + HI S CG + + V++QL +
Sbjct: 245 DNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARF 304
Query: 251 -------RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
+D+V W+++IS + S Q ++AL L ++ + P+ +T++SV+ AC + A
Sbjct: 305 IFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGA 364
Query: 304 LPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
L Q G G + NALIDMY +CG + K+R++F MP KN++SW+ MI+
Sbjct: 365 LVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINA 424
Query: 353 YG 354
+
Sbjct: 425 FA 426
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 169/345 (48%), Gaps = 27/345 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W M+ Y+ +Y+ ++ L+ M G PD + V AC+ + GK ++ ++
Sbjct: 185 WNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIK 244
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHC 151
F + ++ L++++ CG M + +++++ + +V+ +++ YAK ++ +
Sbjct: 245 DNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARF 304
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +KDLV W+AM++GYA E L +EM+ + + P+ I++ V++ACA V
Sbjct: 305 IFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQ--RRRIVPDQITMLSVISACANV 362
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ K IH Y ++ I + CG ++ + VF + ++V+ W+S+I
Sbjct: 363 GALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMI 422
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA--- 317
+AF G A+ L + N++PN VT + VL AC + +G S + N
Sbjct: 423 NAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRI 482
Query: 318 ---------LIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
++D+Y R ++K+ ++ MP N++ W ++S
Sbjct: 483 SPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSA 527
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 101/225 (44%), Gaps = 25/225 (11%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
FS I N +L ++ G E +L + + + + S +L A +++
Sbjct: 72 FSHIPNPPTRFSNQLLRQFSRGPTPENTLSLY--LHLRRNGFPLDRFSFPPLLKAVSKLS 129
Query: 213 GVKLGKAIHG------------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ LG IHG ++ I + ACG ++ + +F+++S RDVV WN +I
Sbjct: 130 ALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMI 189
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLG 309
+ ++ L L ++ + +P+ + + +VL AC L G
Sbjct: 190 DGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFR 249
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
GS + +L++MY CGA+ +R+++ +P K++V M+S Y
Sbjct: 250 VGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYA 294
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 102/251 (40%), Gaps = 47/251 (18%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W++M+ Y E + LF M + + PD V AC+ + K ++ Y
Sbjct: 317 WSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYAD 376
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F GR +NN+LID YAKC L +
Sbjct: 377 KNGF-----------------GRT-------------LPINNALIDMYAKCGNLVKAREV 406
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + +K+++SW++M+ +A+ G + L M+ + +++PN ++ GVL AC+
Sbjct: 407 FENMPRKNVISWSSMINAFAMHGDADSAIALFHRMK--EQNIEPNGVTFIGVLYACSHAG 464
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVF---NQLS-----------TRDVVVWNS 258
V+ G+ ++ H +S C ++ N L +V++W S
Sbjct: 465 LVEEGQKFFSSMINEH-RISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGS 523
Query: 259 IISAFVRSGQV 269
++SA G++
Sbjct: 524 LMSACQNHGEI 534
>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
Length = 723
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/350 (26%), Positives = 175/350 (50%), Gaps = 58/350 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W++++ Y E ++ F+ M++ G P+ + V++ACS ++ +GK ++ ++
Sbjct: 9 SWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKIIFGFL 68
Query: 92 ISIK-FEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ FE + CV L+D+F+K G ++ S KV
Sbjct: 69 LKTGYFESDVCVGCALIDMFVK-GNGDLESAY------------------------KV-- 101
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ +++V+W M+ + GF + +L ++M+ + P+ +LSGV++ACA+
Sbjct: 102 --FDRMPDRNVVTWTLMITRFQQLGFSRDAVDLF--LDMVLSGYVPDRFTLSGVVSACAE 157
Query: 211 VKGVKLGKAIHGYVLRHHIHLST--------------ACGFVICSCSVFNQLSTRDVVVW 256
+ + LG+ H V++ + L A G V + VF+++ +V+ W
Sbjct: 158 MGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSW 217
Query: 257 NSIISAFVRSGQV-VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------- 307
+II+ +V+SG +A++L +++ VKPN T SVL AC L+ + G
Sbjct: 218 TAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVV 277
Query: 308 ---LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L + + V N+LI MY RCG ++ +RK F ++ KNLVS+N +++ Y
Sbjct: 278 KMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYA 327
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 93/348 (26%), Positives = 158/348 (45%), Gaps = 58/348 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT M+ + LG+ + V+LF M+ G PD F V AC+E+ +G+ +
Sbjct: 113 WTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFH---- 168
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKC---RYLKVS 149
C L +K G +D D V SL+D YAKC + +
Sbjct: 169 --------C-------LVMKSG-----------LDLDVCVGCSLVDMYAKCVADGSVDDA 202
Query: 150 HCKFSKIKQKDLVSWNAMLAGYAL-GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
F ++ +++SW A++ GY GG E L +EM+Q ++PN + S VL AC
Sbjct: 203 RKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELF--LEMVQGQVKPNHFTFSSVLKAC 260
Query: 209 AQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWN 257
A + + LG+ ++ V++ I + + CG + + F+ L +++V +N
Sbjct: 261 ANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYN 320
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQ 306
+I++A+ +S +A +L ++ A N T S+L + A L
Sbjct: 321 TIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKS 380
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G + + NALI MY RCG I+ + ++F M N++SW MI+ +
Sbjct: 381 GFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFA 428
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 152/334 (45%), Gaps = 56/334 (16%)
Query: 32 NWTSMM-GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+WT+++ G G E + LF M+ V+P+HF V KAC+ L D +G+ VY
Sbjct: 216 SWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYAL 275
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
++ ++ CV L+ ++ +CG ME F D L
Sbjct: 276 VVKMRLASINCVGNSLISMYSRCGNMENARKAF-----DVLF------------------ 312
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+K+LVS+N ++ YA EE L +E+E T + N + + +L+ +
Sbjct: 313 -------EKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGV--NAFTFASLLSGASS 363
Query: 211 VKGVKLGKAIHGYVL----RHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ + G+ IH +L + ++H+ A CG + + VFN++ +V+ W S+
Sbjct: 364 IGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSM 423
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----- 314
I+ F + G AL+ ++ A V PN VT ++VL AC + + +GL +
Sbjct: 424 ITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHG 483
Query: 315 -------WNALIDMYGRCGAIQKSRKIFVLMPHK 341
+ ++D+ GR G ++++ ++ MP K
Sbjct: 484 IVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFK 517
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 111/223 (49%), Gaps = 29/223 (13%)
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
++DLVSW+A+++ YA E + +M++ PN +GV AC+ + + LG
Sbjct: 4 KRDLVSWSALISCYANNEKAFEAISAF--FDMLECGFYPNEYCFTGVFRACSNKENISLG 61
Query: 218 KAIHGYVLRHHIHLSTAC-------------GFVICSCSVFNQLSTRDVVVWNSIISAFV 264
K I G++L+ S C G + + VF+++ R+VV W +I+ F
Sbjct: 62 KIIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQ 121
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSF 313
+ G DA+DL D++++ P+ T+ V+ AC ++ L GL
Sbjct: 122 QLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVC 181
Query: 314 VWNALIDMYGRC---GAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V +L+DMY +C G++ +RK+F MP N++SW +I+ Y
Sbjct: 182 VGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGY 224
>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1176
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 101/402 (25%), Positives = 174/402 (43%), Gaps = 91/402 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
++ G Q+H++L G+ + LL+++ W M+
Sbjct: 260 LQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVA 319
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ + + LF M G+RP+ F P + + C+ ++ +G+ ++ + FE
Sbjct: 320 FGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFE-- 377
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D V+ LID Y+K +L+ + +K+K
Sbjct: 378 ----------------------------SDMYVSGVLIDMYSKYGWLEKARRVLEMLKEK 409
Query: 160 DLVSWNAMLAGY--------ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
D+VSW +M+AGY AL F+ EM + + P+ I L+ ++ CA +
Sbjct: 410 DVVSWTSMIAGYVQHECCKDALAAFK----------EMQKCGIWPDNIGLASAISGCAGI 459
Query: 212 KGVKLGKAIH------GY-----VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ G IH GY + ++L CG + + S F ++ +D + WN ++
Sbjct: 460 NAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLV 519
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTG-S 312
S F +SG +AL + + + VK N T VS L A LA + QG + TG S
Sbjct: 520 SGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHS 579
Query: 313 F---VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
F V NALI +YG+CG+ + ++ F M +N VSWN +I+
Sbjct: 580 FETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIIT 621
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 154/344 (44%), Gaps = 54/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G EE + L+ M GV P +V V +C++
Sbjct: 110 SWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKA------------- 156
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+LF + GR+ G + V N++I Y +C +++
Sbjct: 157 ----------------ELFAQ-GRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAER 199
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +D V++N +++G+A G E + +EM+ + + P+ +++S +LAACA +
Sbjct: 200 VFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQF--SGLSPDCVTISSLLAACASL 257
Query: 212 KGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ G +H Y+ + I L CG V + +FN +VV+WN ++
Sbjct: 258 GDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLML 317
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQGLG 309
AF + + + +L + A ++PN T +L C + ++ G
Sbjct: 318 VAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFE 377
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ +V LIDMY + G ++K+R++ ++ K++VSW MI+ Y
Sbjct: 378 SDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGY 421
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 89/397 (22%), Positives = 170/397 (42%), Gaps = 77/397 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++LG Q+H+ + G E ++ L++++ +WTSM+
Sbjct: 361 IDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAG 420
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y ++ + F M G+ PD+ C+ + R G ++ + + G
Sbjct: 421 YVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSG- 479
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D + N+L++ YA+C ++ + F +I+ K
Sbjct: 480 -----------------------------DVSIWNALVNLYARCGRIREAFSSFEEIEHK 510
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D ++WN +++G+A G EE + M M Q+ ++ N + L+A A + +K GK
Sbjct: 511 DEITWNGLVSGFAQSGLHEEALKVF--MRMDQSGVKHNVFTFVSALSASANLAEIKQGKQ 568
Query: 220 IHGYVLRHHIHLSTACGFVICS----CSVF-------NQLSTRDVVVWNSIISAFVRSGQ 268
IH V++ T G + S C F +++S R+ V WN+II++ + G+
Sbjct: 569 IHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGR 628
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WN 316
++ALDL + +KPN VT + VL AC + + +GL + +
Sbjct: 629 GLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYA 688
Query: 317 ALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ID++GR G + +++K MP + + W ++S
Sbjct: 689 CVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSA 725
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 119/246 (48%), Gaps = 24/246 (9%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
+V N LID Y+K + + F ++ +D VSW AML+GYA G EE L +M
Sbjct: 78 IVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMH-- 135
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVI 239
+ + P LS VL++C + + G+ IH +H I L CG
Sbjct: 136 RAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFR 195
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ VF + RD V +N++IS + G AL++ ++ + + P+ VTI S+L AC
Sbjct: 196 LAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACA 255
Query: 300 KLAALPQGLGTGSFVWNA-----------LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
L L +G S+++ A L+D+Y +CG ++ + IF N+V WN+
Sbjct: 256 SLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNL 315
Query: 349 MISVYG 354
M+ +G
Sbjct: 316 MLVAFG 321
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 303 ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
A+ +GLG V N LID+Y + G + +R++F + ++ VSW M+S Y
Sbjct: 68 AVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYA 119
>gi|255562005|ref|XP_002522011.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538815|gb|EEF40415.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 585
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 159/345 (46%), Gaps = 52/345 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT M+ + LGYY + ++LF MI G PD++ V AC+EL +GK+++ + I
Sbjct: 248 WTLMISRFQQLGYYRDAIDLFNHMIFSGFMPDNYTLSGVVSACAELGLLSLGKELHSWAI 307
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ CV L+D++ KC V+ SL D S
Sbjct: 308 KSGLVYDVCVGCSLVDMYAKCA-----------------VDGSLDD----------SRKV 340
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFRE-EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +++SW A++ GY G + E T L +EMI+ ++PN + S +L ACA +
Sbjct: 341 FDRMTNHNVMSWTAIITGYVQNGRSDMEATELF--LEMIEGHVKPNHFTFSSILKACANL 398
Query: 212 KGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ LG+ + + ++ I + + C + + F+ L +++V +N+I+
Sbjct: 399 SDLHLGEQFYAHAVKLGFASVNCVGNSLISMYSRCDNMENARKAFDVLFEKNLVSYNTIV 458
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
A+ + +A +L ++ N T S+L + A+ +G
Sbjct: 459 EAYAKGLNSEEAFELFNEIEDTGFVVNAFTFASLLSGASSIGAIGKGEQIHARILKSDFK 518
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
T + NALI MY RCG I+ + ++F M +N++SW MI+ Y
Sbjct: 519 TNLHISNALISMYSRCGDIEAAFQVFNGMGDRNVISWTSMITGYA 563
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 154/338 (45%), Gaps = 60/338 (17%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G+ + + +M PD + K+C +++ GK V++ C+
Sbjct: 54 GHLSKAIIALDVMTQNNTHPDLITYSLLLKSCIRSNNFQKGKLVHN-----------CLT 102
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKF-SKIKQKDLV 162
+ L+L D ++ NSLI Y+KC L ++ F S ++DLV
Sbjct: 103 QSGLEL-------------------DSVILNSLISLYSKCGELNSANDIFISMGNKRDLV 143
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW+A+++ YA G + + ++M+ + PN S V+ +C+ + G+ I G
Sbjct: 144 SWSALISCYATNGLEFDAIRVY--IDMLVSGFFPNEYCYSAVIKSCSNRENFSYGEIIFG 201
Query: 223 YV-----LRHHIHLSTA--------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
+ L H+ + A CG V +C VF+ +S R++V W +IS F + G
Sbjct: 202 SLIKCGYLNSHVCVGCALIDMYAKGCGDVEGACKVFDNMSERNIVTWTLMISRFQQLGYY 261
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNAL 318
DA+DL +I + P+ T+ V+ AC +L A+ GL V +L
Sbjct: 262 RDAIDLFNHMIFSGFMPDNYTLSGVVSACAELGLLSLGKELHSWAIKSGLVYDVCVGCSL 321
Query: 319 IDMYGRC---GAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+DMY +C G++ SRK+F M + N++SW +I+ Y
Sbjct: 322 VDMYAKCAVDGSLDDSRKVFDRMTNHNVMSWTAIITGY 359
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 120/261 (45%), Gaps = 44/261 (16%)
Query: 32 NWTSMMGMYNVLGYYE-EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+WT+++ Y G + E LF MI+ V+P+HF + KAC+ L D +G+ Y +
Sbjct: 351 SWTAIITGYVQNGRSDMEATELFLEMIEGHVKPNHFTFSSILKACANLSDLHLGEQFYAH 410
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ + F CV NSLI Y++C ++ +
Sbjct: 411 AVKLGFASVNCV------------------------------GNSLISMYSRCDNMENAR 440
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + +K+LVS+N ++ YA G EE L +E+E T N + + +L+ +
Sbjct: 441 KAFDVLFEKNLVSYNTIVEAYAKGLNSEEAFELFNEIE--DTGFVVNAFTFASLLSGASS 498
Query: 211 VKGVKLGKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ + G+ IH +L+ ++H+S A CG + + VFN + R+V+ W S+
Sbjct: 499 IGAIGKGEQIHARILKSDFKTNLHISNALISMYSRCGDIEAAFQVFNGMGDRNVISWTSM 558
Query: 260 ISAFVRSGQVVDALDLLRDVI 280
I+ + + G V AL+ ++
Sbjct: 559 ITGYAKHGFAVRALETFHKML 579
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 12/103 (11%)
Query: 264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGS 312
+++G + A+ L + N P+ +T +L +C++ +G L S
Sbjct: 51 LKAGHLSKAIIALDVMTQNNTHPDLITYSLLLKSCIRSNNFQKGKLVHNCLTQSGLELDS 110
Query: 313 FVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISVYG 354
+ N+LI +Y +CG + + IF+ M +K +LVSW+ +IS Y
Sbjct: 111 VILNSLISLYSKCGELNSANDIFISMGNKRDLVSWSALISCYA 153
>gi|218187045|gb|EEC69472.1| hypothetical protein OsI_38669 [Oryza sativa Indica Group]
Length = 1084
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/394 (24%), Positives = 174/394 (44%), Gaps = 75/394 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
++ G Q+H++L G+ + LL+++ W ++
Sbjct: 260 LQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFNLGNRTNVVLWNLILVA 319
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ + + LF M G+RP+ F P + + C+ + +G+ ++ + FE
Sbjct: 320 FGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLGEQIHSLSVKTGFE-- 377
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D V+ LID Y+K +L+ + +K+K
Sbjct: 378 ----------------------------SDMYVSGVLIDMYSKYGWLEKARRVLEMLKEK 409
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSW +M+AGY + ++ EM+ + + P+ I L+ ++ CA +K ++ G
Sbjct: 410 DVVSWTSMIAGYVQHEYCKDALAAFKEMQ--KCGIWPDNIGLASAISGCAGIKAMRQGLQ 467
Query: 220 IH------GY-----VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH GY + ++L CG + + S F ++ +D + WN ++S F +SG
Sbjct: 468 IHARVYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGL 527
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTG-SF---VWNA 317
+AL + + + VK N T VS L A LA + QG + TG SF V NA
Sbjct: 528 HEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNA 587
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
LI +YG+CG+ + ++ F M +N VSWN +I+
Sbjct: 588 LISLYGKCGSFEDAKMEFSEMSERNEVSWNTIIT 621
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 79/344 (22%), Positives = 153/344 (44%), Gaps = 54/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G EE + L+ M GV P +V V +C++ + + G+ V+
Sbjct: 110 SWVAMLSGYAQNGLGEEALWLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRSVHAQG 169
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F V L+ L+++CG + +F +M
Sbjct: 170 YKQGFCSETFVGNALITLYLRCGSFRLAERVFYDM------------------------- 204
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+D V++N +++G+A E + +EM+ + + P+ +++S +LAACA +
Sbjct: 205 -----PHRDTVTFNTLISGHAQCAHGEHALEIFEEMQ--SSGLSPDCVTISSLLAACASL 257
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ G +H Y+ + + L CG V + +FN + +VV+WN I+
Sbjct: 258 GDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFNLGNRTNVVLWNLIL 317
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQGLG 309
AF + + + +L + A ++PN T +L C + ++ G
Sbjct: 318 VAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLGEQIHSLSVKTGFE 377
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ +V LIDMY + G ++K+R++ ++ K++VSW MI+ Y
Sbjct: 378 SDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGY 421
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 126/259 (48%), Gaps = 28/259 (10%)
Query: 118 ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFR 177
IT GL +D +V N LID Y+K + + F ++ +D VSW AML+GYA G
Sbjct: 69 ITRGL----GKDRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLG 124
Query: 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG-----------YVLR 226
EE L +M + + P LS VL++C + + G+++H +V
Sbjct: 125 EEALWLYRQMH--RAGVVPTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSETFVGN 182
Query: 227 HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286
I L CG + VF + RD V +N++IS + AL++ ++ + + P
Sbjct: 183 ALITLYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSP 242
Query: 287 NTVTIVSVLPACLKLAALPQGLGTGSFVWNA-----------LIDMYGRCGAIQKSRKIF 335
+ VTI S+L AC L L +G S+++ A L+D+Y +CG ++ + IF
Sbjct: 243 DCVTISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIF 302
Query: 336 VLMPHKNLVSWNVMISVYG 354
L N+V WN+++ +G
Sbjct: 303 NLGNRTNVVLWNLILVAFG 321
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/385 (21%), Positives = 160/385 (41%), Gaps = 77/385 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++LG Q+H+ + G E ++ L++++ +WTSM+
Sbjct: 361 IDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAG 420
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y Y ++ + F M G+ PD+ C+ +K R G ++ + + G
Sbjct: 421 YVQHEYCKDALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHARVYVSGYSG- 479
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D + N+L++ YA+C ++ + F +I+ K
Sbjct: 480 -----------------------------DVSIWNALVNLYARCGRIREAFSSFEEIEHK 510
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D ++WN +++G+A G EE + M M Q+ ++ N + L+A A + +K GK
Sbjct: 511 DEITWNGLVSGFAQSGLHEEALKVF--MRMDQSGVKHNVFTFVSALSASANLAEIKQGKQ 568
Query: 220 IHGYVLRHHIHLSTACGFVICS----CSVF-------NQLSTRDVVVWNSIISAFVRSGQ 268
IH V++ T G + S C F +++S R+ V WN+II++ + G+
Sbjct: 569 IHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGR 628
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAI 328
++ALD +K ++ + + P + +ID++GR G +
Sbjct: 629 GLEALDFF-----DQMKKEGLSYFKSMSDKYGIRPRPDH-------YACVIDIFGRAGQL 676
Query: 329 QKSRKIFVLMP-HKNLVSWNVMISV 352
+++K MP + + W ++S
Sbjct: 677 DRAKKFVEEMPIAADAMVWRTLLSA 701
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 303 ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
A+ +GLG V N LID+Y + G + +R++F + ++ VSW M+S Y
Sbjct: 68 AITRGLGKDRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYA 119
>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
Length = 687
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/376 (26%), Positives = 165/376 (43%), Gaps = 90/376 (23%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WT ++ G E + + K V PD + V KAC+ L+D K V++
Sbjct: 45 WTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLLLSVAKACASLRDVMNAKRVHEDA 104
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I F C D L+ N+LID Y KCR + +
Sbjct: 105 IRFGF----------------C--------------SDVLLGNALIDMYGKCRCSEGARL 134
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +D++SW +M + Y G E +M + +PN++++S +L AC +
Sbjct: 135 VFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGL--NGERPNSVTVSSILPACTDL 192
Query: 212 KGVKLGKAIHGYVLRH----HIHLSTACGFVICSC-------SVFNQLSTRDVVVWNSII 260
K +K G+ +HG+V+R+ ++ +S+A + SC VF+ +S RD V WN +I
Sbjct: 193 KDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLI 252
Query: 261 SAF-----------------------------------VRSGQVVDALDLLRDVIVANVK 285
+A+ +++G+ AL++L + + K
Sbjct: 253 TAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFK 312
Query: 286 PNTVTIVSVLPACLKLAALPQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKI 334
PN +TI SVLPAC L +L G +++ AL+ MY +CG ++ SR++
Sbjct: 313 PNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRV 372
Query: 335 FVLMPHKNLVSWNVMI 350
F +M ++ VSWN MI
Sbjct: 373 FSMMTKRDTVSWNTMI 388
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 160/336 (47%), Gaps = 30/336 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM Y G E + F M G RP+ + AC++LKD + G++V+ ++
Sbjct: 146 SWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFV 205
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSH 150
+ GN V L++++ C + +F+ M + D + N LI Y + +
Sbjct: 206 VRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGL 265
Query: 151 CKFSKIKQK----DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
F ++ + + SWNA++ G G E+ +L M+ + +PN I+++ VL
Sbjct: 266 SVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQ--NSGFKPNQITITSVLP 323
Query: 207 ACAQVKGVKLGKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVV 255
AC ++ ++ GK IHGY+ RH + +TA CG + S VF+ ++ RD V
Sbjct: 324 ACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVS 383
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL------- 308
WN++I A G +AL L R+++ + V+PN+VT VL C + +GL
Sbjct: 384 WNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMS 443
Query: 309 -----GTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+ + ++D+ R G ++++ + MP
Sbjct: 444 RDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMP 479
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 114/240 (47%), Gaps = 23/240 (9%)
Query: 136 LIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ 195
I Y+ L+ + F KI Q DL +W +++ G E ++ + ++
Sbjct: 17 FIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRH-KNCVE 75
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVI------CSCS-----V 244
P+ + L V ACA ++ V K +H +R G + C CS V
Sbjct: 76 PDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLV 135
Query: 245 FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL 304
F + RDV+ W S+ S +V G + +AL R + + +PN+VT+ S+LPAC L L
Sbjct: 136 FEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDL 195
Query: 305 P-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G+G FV +AL++MY C +I++++ +F M ++ VSWNV+I+ Y
Sbjct: 196 KSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAY 255
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 98/227 (43%), Gaps = 42/227 (18%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGV 61
E G+ V ++ GV L + +W +++G G E+ + + M + G
Sbjct: 262 EKGLSVFGRMMSEGVGLN----------YASWNAVIGGCMQNGRTEKALEVLSRMQNSGF 311
Query: 62 RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSG 121
+P+ V AC+ L+ R GK ++ Y+ F + L+ ++ KCG +E++
Sbjct: 312 KPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRR 371
Query: 122 LFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVT 181
+ FS + ++D VSWN M+ ++ G EE
Sbjct: 372 V------------------------------FSMMTKRDTVSWNTMIIATSMHGNGEEA- 400
Query: 182 NLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH 228
LL EM+ + ++PN+++ +GVL+ C+ + V G I + R H
Sbjct: 401 -LLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDH 446
>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Cucumis sativus]
Length = 781
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/371 (26%), Positives = 166/371 (44%), Gaps = 85/371 (22%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
+ M+ MY G +++ LF + + G+ PD F P V KA L+D R G+ V +++
Sbjct: 211 YNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIV 270
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
K G MD D V NSLID Y + ++ +
Sbjct: 271 -------------------KTG-----------MDLDNYVYNSLIDMYYELSNVENAKKL 300
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ +D VSWN M++GY E+ N EM+ + + +P+ ++ L+AC +K
Sbjct: 301 FDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQ-EGNEKPDEATVVSTLSACTALK 359
Query: 213 GVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLS------------ 249
++LG IH YV R + +T CG + + ++F+++S
Sbjct: 360 NLELGDEIHNYV-RKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMIS 418
Query: 250 -------------------TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
RDVV+W ++I+ +V+ DA+ L R++ + VKP+ T
Sbjct: 419 GYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFT 478
Query: 291 IVSVLPACLKLAALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMP 339
+V++L C +L AL QG + V ALI+MY +CG + KS +IF +
Sbjct: 479 VVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELE 538
Query: 340 HKNLVSWNVMI 350
K+ SW +I
Sbjct: 539 DKDTASWTSII 549
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 164/348 (47%), Gaps = 31/348 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W M+ Y +E+ +N F M +G +PD AC+ LK+ +G ++++Y
Sbjct: 311 SWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNY 370
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVS 149
+ + + LLD++ KCG + I +F+EM ++ + S+I Y C L+ +
Sbjct: 371 -VRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREA 429
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F K +D+V W AM+ GY ++ L EM++ + ++P+ ++ +L CA
Sbjct: 430 RDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQR--VKPDKFTVVTLLTGCA 487
Query: 210 QVKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNS 258
Q+ ++ GK IHGY+ + I + + CG V S +F +L +D W S
Sbjct: 488 QLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTS 547
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------- 307
II +G+ +AL L ++ KP+ +T + VL AC + +G
Sbjct: 548 IICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVH 607
Query: 308 -LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + +ID+ GR G + ++ ++ +P +N +++ +YG
Sbjct: 608 RIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENC---EIVVPLYG 652
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA--CLKL 301
+FN + + V+N ++ + + G + L L + + + P+ T VL A CL+
Sbjct: 199 IFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRD 258
Query: 302 AA---------LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+ G+ ++V+N+LIDMY ++ ++K+F M ++ VSWNVMIS
Sbjct: 259 VRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISG 318
Query: 353 Y 353
Y
Sbjct: 319 Y 319
>gi|147833477|emb|CAN75184.1| hypothetical protein VITISV_001911 [Vitis vinifera]
Length = 596
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/341 (25%), Positives = 157/341 (46%), Gaps = 48/341 (14%)
Query: 27 LEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKD 86
E +W +++ ++ + +++ LF M+ +G D F KAC L ++ K
Sbjct: 24 FENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLFQGAKL 83
Query: 87 VYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL 146
+ I ++ EG+ V L++++ + G +E +FEE
Sbjct: 84 FHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEE--------------------- 122
Query: 147 KVSHCKFSKIKQKDLVSWNAMLAGYALGGFREE--VTNLLDEMEMIQTDMQPNTISLSGV 204
+ K+ V W M+ GY F EE V L M ++ P + G+
Sbjct: 123 ---------VPLKNSVIWGVMIKGYL--NFSEEFGVFELFSRMRRSGFELDPFVV--EGL 169
Query: 205 LAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
+ AC V K GK HG ++ GF+ + +F + RBVVVW++II+ F
Sbjct: 170 IQACGNVYAGKEGKTFHGLYFSSG-YVYEVRGFLDXALXLFEXIXYRBVVVWSAIIAGFA 228
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV---------- 314
R+G+ ++++ + R ++ +V PN+VT S++ AC L +L QG ++
Sbjct: 229 RNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVK 288
Query: 315 -WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + IDMY +CG I + ++F +P KN+ SW+ MI+ +G
Sbjct: 289 NYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFG 329
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 111/222 (50%), Gaps = 26/222 (11%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I +B+V W+A++AG+A G E ++ +M + + PN+++ + ++ AC+ +
Sbjct: 209 FEXIXYRBVVVWSAIIAGFARNGRALESISMFRQM--LADSVTPNSVTFASIVLACSSLG 266
Query: 213 GVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+K G+++HGY++R+ + L CG ++ + VF Q+ ++V W+++I+
Sbjct: 267 SLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMIN 326
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------- 314
F G +AL+L ++ N PN+VT VSVL AC + +G +
Sbjct: 327 GFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGIT 386
Query: 315 -----WNALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMI 350
+ ++D+ GR G I ++ MP + S W ++
Sbjct: 387 PVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALL 428
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 32/185 (17%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W++++ + G E +++F M+ V P+ + ACS L + G+ V+ YMI
Sbjct: 220 WSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMI 279
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
R ++L +K S ID YAKC + ++
Sbjct: 280 -----------RNGVELDVKN-------------------YTSFIDMYAKCGCIVTAYRV 309
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F +I +K++ SW+ M+ G+ + G E NL EM + + PN+++ VL+AC+
Sbjct: 310 FCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSV--NQLPNSVTFVSVLSACSHSG 367
Query: 213 GVKLG 217
++ G
Sbjct: 368 RIEEG 372
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 63/129 (48%), Gaps = 11/129 (8%)
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
G + + FN ++ ++ WN+I+++ ++ D L L + ++ ++ +V +
Sbjct: 10 GSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAV 69
Query: 296 PACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLV 344
AC L+ A+ L +V AL+++Y G+++++ K+F +P KN V
Sbjct: 70 KACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSV 129
Query: 345 SWNVMISVY 353
W VMI Y
Sbjct: 130 IWGVMIKGY 138
>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
Length = 613
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 160/333 (48%), Gaps = 42/333 (12%)
Query: 58 DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRME 117
D V P+ F P V+KAC + R G+ V+ + + + V ++ +++ CG ME
Sbjct: 82 DCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVME 141
Query: 118 ITSGLF----------------EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
LF +D D ++ N +ID Y + L+V+ F ++ Q+ +
Sbjct: 142 DAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSV 201
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSWN M+AGYA G +E + EM+M ++ PN ++L VL A +++ ++LGK +H
Sbjct: 202 VSWNVMIAGYAQSGHFKEAVEVFREMQM--AEVPPNYVTLVSVLPAMSRLGALELGKWVH 259
Query: 222 GYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y +R++ I + CG + + VF L R+VV W++II+ G+
Sbjct: 260 LYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAK 319
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GLGTGSFVWNAL 318
D LD D+ A V P+ VT + +L AC + + GL + +
Sbjct: 320 DTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCM 379
Query: 319 IDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMI 350
+D+ GR G +++S ++ + MP K + V W ++
Sbjct: 380 VDLLGRAGLLEESEELILNMPIKPDDVIWKALL 412
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 137/295 (46%), Gaps = 73/295 (24%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCK--FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
+D L L+ F A + + + + F + + + S+N ++ AL + LL
Sbjct: 18 RDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLI--RALSESNDPCDALLV 75
Query: 186 EMEMIQT-DMQPNTISLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLST 233
+EM++ ++PN + V AC + + ++ G+ +HG +V+ + + +
Sbjct: 76 FIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYL 135
Query: 234 ACGFV------------ICSC----------------------------------SVFNQ 247
+CG + + C ++F++
Sbjct: 136 SCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDE 195
Query: 248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
+ R VV WN +I+ + +SG +A+++ R++ +A V PN VT+VSVLPA +L AL G
Sbjct: 196 MPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELG 255
Query: 308 -----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+G + +ALIDMY +CG+I+K+ ++F +P +N+V+W+ +I+
Sbjct: 256 KWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIA 310
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 87/195 (44%), Gaps = 32/195 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W M+ Y G+++E V +F M V P++ V A S L +GK V+ Y
Sbjct: 203 SWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYA 262
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + + L+D++ KCG +E +FE
Sbjct: 263 VRNNIGVDDVLGSALIDMYAKCGSIEKALQVFE--------------------------- 295
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+ ++++V+W+ ++AG A+ G ++ + ++ME + + P+ ++ G+L+AC+
Sbjct: 296 ---GLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDME--RAGVMPSDVTYIGLLSACSHA 350
Query: 212 KGVKLGKAIHGYVLR 226
V G+ +++R
Sbjct: 351 GLVNEGRWFFDHMVR 365
>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 157/316 (49%), Gaps = 26/316 (8%)
Query: 63 PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGL 122
P+ K+ +C + R + V+ ++ +F ++ L+D++ KC ++ L
Sbjct: 13 PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKL 72
Query: 123 FEEMDQ-DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVT 181
F+ M Q + NSLI K +L + F + + D SWN+M++G+A EE
Sbjct: 73 FDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESL 132
Query: 182 NLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IH 230
++M + D N S L+ACA + + +G +H V + I
Sbjct: 133 EYF--VKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALID 190
Query: 231 LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
+ + CG V C+ VF+ + R++V WNS+I+ + ++G +AL++ ++ + ++P+ VT
Sbjct: 191 MYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVT 250
Query: 291 IVSVLPACLKLAALPQGL-------GTGSF-----VWNALIDMYGRCGAIQKSRKIFVLM 338
+ SV+ AC L AL +GL T F + NAL+DMY +C + ++R++F M
Sbjct: 251 LASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRM 310
Query: 339 PHKNLVSWNVMISVYG 354
+N+VS M+S Y
Sbjct: 311 SIRNVVSETSMVSGYA 326
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/387 (22%), Positives = 177/387 (45%), Gaps = 50/387 (12%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ +G QVHA + ++GS L++++ W S++
Sbjct: 163 LNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITC 222
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI-KFEG 98
Y G E + +F M+D G+ PD V AC+ L + G ++ ++ KF
Sbjct: 223 YEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRD 282
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
+ + L+D++ KC ++ +F+ M ++ + S++ YA+ +K + FSK+
Sbjct: 283 DLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMT 342
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
Q+++VSWNA++AGY G EE L ++ + + P + +L + + +G
Sbjct: 343 QRNVVSWNALIAGYTQNGENEEALRLFRLLK--RESIWPTHYTFGNLLKS-----DIFVG 395
Query: 218 KAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLR 277
++ I + CG + VF ++ RD V WN+II + ++G +AL + R
Sbjct: 396 NSL--------IDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFR 447
Query: 278 DVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTGSFV-----WNALIDMYGRCG 326
++V KP+ VT++ VL AC + +G + + + ++D+ GR G
Sbjct: 448 KMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLLGRAG 507
Query: 327 AIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ +++ + MP + + V W +++
Sbjct: 508 CLNEAKNLIEAMPVNPDAVVWGSLLAA 534
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 84/381 (22%), Positives = 159/381 (41%), Gaps = 88/381 (23%)
Query: 17 ELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACS 76
E GS C+W SM+ + +EE + F M + + + AC+
Sbjct: 99 EAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACA 158
Query: 77 ELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSL 136
L D +G V+ + ++ D + ++L
Sbjct: 159 GLMDLNMGTQVHALVSKSRY------------------------------STDVYMGSAL 188
Query: 137 IDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP 196
ID Y+KC + + FS + +++LV+WN+++ Y G E + + M+ + ++P
Sbjct: 189 IDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVF--VRMMDSGLEP 246
Query: 197 NTISLSGVLAACAQVKGVKLGKAIHGYVL-----RHHIHLSTACGFVICSCS-------- 243
+ ++L+ V++ACA + +K G IH V+ R + L A + CS
Sbjct: 247 DEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRV 306
Query: 244 ------------------------------VFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
+F++++ R+VV WN++I+ + ++G+ +AL
Sbjct: 307 FDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEAL 366
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRK 333
L R + ++ P T ++L + + FV N+LIDMY +CG+I+ +
Sbjct: 367 RLFRLLKRESIWPTHYTFGNLLKSDI-------------FVGNSLIDMYMKCGSIEDGSR 413
Query: 334 IFVLMPHKNLVSWNVMISVYG 354
+F M ++ VSWN +I Y
Sbjct: 414 VFEKMKERDCVSWNAIIVGYA 434
>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
Length = 682
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 97/394 (24%), Positives = 176/394 (44%), Gaps = 77/394 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEV---------------------FCNWTSMMGMY 40
ELG+++H+ ++ G E AF+ L+ + F +WT+ + Y
Sbjct: 125 ELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGY 184
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+G E +++F +++ G+RPD F +V AC D R G+ + +Y+
Sbjct: 185 VGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITE------- 237
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
M ++ V +L+DFY KC ++ + F + +K+
Sbjct: 238 -----------------------NGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKN 274
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG--- 217
+VSW++M+ GYA G +E +L +M+ ++P+ ++ GVL +CA++ ++LG
Sbjct: 275 IVSWSSMIQGYASNGLPKEALDLF--FKMLNEGLKPDCYAMVGVLCSCARLGALELGDWA 332
Query: 218 -KAIHGYVLRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
I+G + L TA CG + + VF + +D VVWN+ IS SG V
Sbjct: 333 SNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHV 392
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNA 317
DAL L + + +KP+ T V +L AC + +G L +
Sbjct: 393 KDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGC 452
Query: 318 LIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
++D+ GR G + ++ ++ MP N + W ++
Sbjct: 453 MVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALL 486
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 159/329 (48%), Gaps = 56/329 (17%)
Query: 46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP 105
++E + +++ M +G+ PD F P V KAC+ + D +G ++ ++ E +A VK
Sbjct: 89 FQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVKI- 147
Query: 106 LLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWN 165
SLI+ Y KC ++ + F I K+ SW
Sbjct: 148 -----------------------------SLINLYTKCGFIDNAFKVFDDIPDKNFASWT 178
Query: 166 AMLAGY-ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
A ++GY +G RE + +EM ++P++ SL VL+AC + ++ G+ I Y+
Sbjct: 179 ATISGYVGVGKCREAIDMFRRLLEM---GLRPDSFSLVEVLSACKRTGDLRSGEWIDEYI 235
Query: 225 LRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
+ ++ ++TA CG + + SVF+ + +++V W+S+I + +G +AL
Sbjct: 236 TENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEAL 295
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTGSFVWN-----ALIDMY 322
DL ++ +KP+ +V VL +C +L AL G + F+ N ALIDMY
Sbjct: 296 DLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMY 355
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+CG + ++ ++F M K+ V WN IS
Sbjct: 356 AKCGRMDRAWEVFRGMRKKDRVVWNAAIS 384
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 122/251 (48%), Gaps = 24/251 (9%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
+D+D + N ++ F S + K+ ++ +N M+ G L +E +
Sbjct: 38 LDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYH 97
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTA 234
M + + P++ + VL ACA+V +LG +H V++ I+L T
Sbjct: 98 SMR--KEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTK 155
Query: 235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV 294
CGF+ + VF+ + ++ W + IS +V G+ +A+D+ R ++ ++P++ ++V V
Sbjct: 156 CGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEV 215
Query: 295 LPACLKLAAL-----------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
L AC + L G+ FV AL+D YG+CG ++++R +F M KN+
Sbjct: 216 LSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNI 275
Query: 344 VSWNVMISVYG 354
VSW+ MI Y
Sbjct: 276 VSWSSMIQGYA 286
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 69/151 (45%), Gaps = 11/151 (7%)
Query: 214 VKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
++LG Y+L + S G S + +Q ++ ++N++I V + +++
Sbjct: 34 LRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLNDCFQESI 93
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKL-----------AALPQGLGTGSFVWNALIDMY 322
++ + + P++ T VL AC ++ + G +FV +LI++Y
Sbjct: 94 EIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLY 153
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+CG I + K+F +P KN SW IS Y
Sbjct: 154 TKCGFIDNAFKVFDDIPDKNFASWTATISGY 184
>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 727
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 101/349 (28%), Positives = 162/349 (46%), Gaps = 58/349 (16%)
Query: 30 FCNWTSMM--GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDV 87
+WT+++ M+N G E + LF M +G+ PD + + AC L+ ++G +
Sbjct: 198 LASWTALICGTMWN--GECLEALLLFRKMRSEGLMPDSVIVASILPACGRLEAVKLGMAL 255
Query: 88 YDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147
C R SG + D V+N++ID Y KC
Sbjct: 256 -----------QVCAVR---------------SGF----ESDLYVSNAVIDMYCKCGDPL 285
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
+H FS + D+VSW+ ++AGY+ +E L + MI + N I + VL A
Sbjct: 286 EAHRVFSHMVYSDVVSWSTLIAGYSQNCLYQESYKLY--IGMINVGLATNAIVATSVLPA 343
Query: 208 CAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVW 256
+++ +K GK +H +VL+ I + CG + + S+F S +D++VW
Sbjct: 344 LGKLELLKQGKEMHNFVLKEGLMSDVVVGSALIVMYANCGSIKEAESIFECTSDKDIMVW 403
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ---------- 306
NS+I + G A R + A +PN +T+VS+LP C ++ AL Q
Sbjct: 404 NSMIVGYNLVGDFESAFFTFRRIWGAEHRPNFITVVSILPICTQMGALRQGKEIHGYVTK 463
Query: 307 -GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
GLG V N+LIDMY +CG ++ K+F M +N+ ++N MIS G
Sbjct: 464 SGLGLNVSVGNSLIDMYSKCGFLELGEKVFKQMMVRNVTTYNTMISACG 512
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/343 (27%), Positives = 163/343 (47%), Gaps = 55/343 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +++ +G++ + ++ ++ M+ GV PD++ P V KACS L ++G+ V++ M
Sbjct: 101 WNAILRGLVAVGHFTKAIHFYHSMLQHGVTPDNYTYPLVLKACSSLHALQLGRWVHETMH 160
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
K + N V+ ++D+F KCG +E +FEEM
Sbjct: 161 G-KTKANVYVQCAVIDMFAKCGSVEDARRMFEEM-------------------------- 193
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
+DL SW A++ G G E + LL +M + P+++ ++ +L AC +++
Sbjct: 194 ----PDRDLASWTALICGTMWNG--ECLEALLLFRKMRSEGLMPDSVIVASILPACGRLE 247
Query: 213 GVKLGKAIHGYVLR----HHIHLSTACGFVICSCS-------VFNQLSTRDVVVWNSIIS 261
VKLG A+ +R +++S A + C C VF+ + DVV W+++I+
Sbjct: 248 AVKLGMALQVCAVRSGFESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSWSTLIA 307
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW------ 315
+ ++ ++ L +I + N + SVLPA KL L QG +FV
Sbjct: 308 GYSQNCLYQESYKLYIGMINVGLATNAIVATSVLPALGKLELLKQGKEMHNFVLKEGLMS 367
Query: 316 -----NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ALI MY CG+I+++ IF K+++ WN MI Y
Sbjct: 368 DVVVGSALIVMYANCGSIKEAESIFECTSDKDIMVWNSMIVGY 410
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 145/331 (43%), Gaps = 55/331 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W++++ Y+ Y+E L+ MI+ G+ + V V A +L+ + GK++++++
Sbjct: 301 SWSTLIAGYSQNCLYQESYKLYIGMINVGLATNAIVATSVLPALGKLELLKQGKEMHNFV 360
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ E + D +V ++LI YA C +K +
Sbjct: 361 LK------------------------------EGLMSDVVVGSALIVMYANCGSIKEAES 390
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F KD++ WN+M+ GY L G E + + +PN I++ +L C Q+
Sbjct: 391 IFECTSDKDIMVWNSMIVGYNLVGDFESA--FFTFRRIWGAEHRPNFITVVSILPICTQM 448
Query: 212 KGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSII 260
++ GK IHGYV + + L+ + CGF+ VF Q+ R+V +N++I
Sbjct: 449 GALRQGKEIHGYVTKSGLGLNVSVGNSLIDMYSKCGFLELGEKVFKQMMVRNVTTYNTMI 508
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-LGTGSFV----- 314
SA GQ L + +PN VT +S+L AC L +G L S +
Sbjct: 509 SACGSHGQGEKGLAFYEQMKEEGNRPNKVTFISLLSACSHAGLLDRGWLLYNSMINDYGI 568
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMP 339
++ ++D+ GR G + + K MP
Sbjct: 569 EPNMEHYSCMVDLIGRAGDLDGAYKFITRMP 599
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 124/242 (51%), Gaps = 25/242 (10%)
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGY-ALGGFREEVTNLLDEMEMIQT 192
+ L++ Y L+ + F + K +++WNA+L G A+G F + + M+Q
Sbjct: 71 SQLVNVYVNFGSLQHAFLTFRALPHKPIIAWNAILRGLVAVGHFTKAIHFY---HSMLQH 127
Query: 193 DMQPNTISLSGVLAACAQVKGVKLGKAIHG----------YVLRHHIHLSTACGFVICSC 242
+ P+ + VL AC+ + ++LG+ +H YV I + CG V +
Sbjct: 128 GVTPDNYTYPLVLKACSSLHALQLGRWVHETMHGKTKANVYVQCAVIDMFAKCGSVEDAR 187
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC---- 298
+F ++ RD+ W ++I + +G+ ++AL L R + + P++V + S+LPAC
Sbjct: 188 RMFEEMPDRDLASWTALICGTMWNGECLEALLLFRKMRSEGLMPDSVIVASILPACGRLE 247
Query: 299 -------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
L++ A+ G + +V NA+IDMY +CG ++ ++F M + ++VSW+ +I+
Sbjct: 248 AVKLGMALQVCAVRSGFESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSWSTLIA 307
Query: 352 VY 353
Y
Sbjct: 308 GY 309
>gi|242094978|ref|XP_002437979.1| hypothetical protein SORBIDRAFT_10g005810 [Sorghum bicolor]
gi|241916202|gb|EER89346.1| hypothetical protein SORBIDRAFT_10g005810 [Sorghum bicolor]
Length = 657
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/325 (28%), Positives = 154/325 (47%), Gaps = 55/325 (16%)
Query: 53 FYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111
F M++ G VRPD +A +E +G+ V+ Y + + V L+ L+
Sbjct: 199 FVRMVEVGRVRPDSTTLASSLRAAAEASHVAMGRCVHGYGVKCGLAEHEHVVTGLMSLYS 258
Query: 112 KCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGY 171
KCG M+ L F +++ DLV++NA+++GY
Sbjct: 259 KCGDMDCARSL------------------------------FDRMEDPDLVAYNALISGY 288
Query: 172 ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH- 230
++ G E L E+ +D +PN+ +L V+ + L + +H +V++ +
Sbjct: 289 SVNGMVESSVELFKELA--ASDWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDA 346
Query: 231 ---LSTACGFVIC-------SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280
+STA + C + S+F+ + + + WN++IS + ++G A++L + +
Sbjct: 347 DALVSTALTTLYCRLNDMESARSIFDAMPEKTMESWNAMISGYAQNGLTEMAVELFQLMQ 406
Query: 281 VANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQ 329
NV+PN TI S L AC +L AL G L +V ALIDMY +CG+I
Sbjct: 407 ELNVQPNPTTISSTLSACAQLGALSLGTWVHRIIAKENLELNVYVMTALIDMYAKCGSIA 466
Query: 330 KSRKIFVLMPHKNLVSWNVMISVYG 354
++R IF M +KN+VSWN MIS YG
Sbjct: 467 EARSIFDRMDNKNVVSWNAMISGYG 491
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 124/253 (49%), Gaps = 37/253 (14%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGY----ALGGFREEVTNLL 184
D V ++L Y K + + F + D + WN +LAG AL F
Sbjct: 148 DTFVASALAKLYFKLSKVDDARKVFDAVPSPDTILWNTLLAGLPGSVALEAF-------- 199
Query: 185 DEMEMIQT-DMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTA----- 234
+ M++ ++P++ +L+ L A A+ V +G+ +HGY ++ H H+ T
Sbjct: 200 --VRMVEVGRVRPDSTTLASSLRAAAEASHVAMGRCVHGYGVKCGLAEHEHVVTGLMSLY 257
Query: 235 --CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
CG + C+ S+F+++ D+V +N++IS + +G V +++L +++ ++ +PN+ T+V
Sbjct: 258 SKCGDMDCARSLFDRMEDPDLVAYNALISGYSVNGMVESSVELFKELAASDWRPNSSTLV 317
Query: 293 SVLPA-----------CLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK 341
+V+P CL + L + V AL +Y R ++ +R IF MP K
Sbjct: 318 AVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMPEK 377
Query: 342 NLVSWNVMISVYG 354
+ SWN MIS Y
Sbjct: 378 TMESWNAMISGYA 390
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 122/253 (48%), Gaps = 27/253 (10%)
Query: 125 EMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLL 184
+D D LV+ +L Y + ++ + F + +K + SWNAM++GYA G E L
Sbjct: 343 RLDADALVSTALTTLYCRLNDMESARSIFDAMPEKTMESWNAMISGYAQNGLTEMAVELF 402
Query: 185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLST 233
M+ + ++QPN ++S L+ACAQ+ + LG +H YV+ I +
Sbjct: 403 QLMQ--ELNVQPNPTTISSTLSACAQLGALSLGTWVHRIIAKENLELNVYVMTALIDMYA 460
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
CG + + S+F+++ ++VV WN++IS + G+ +AL L + ++ A + P + T +S
Sbjct: 461 KCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGRGAEALKLYKSMLDACILPTSSTFLS 520
Query: 294 VLPACLKLAALPQGLGTGSFVWNA------------LIDMYGRCGAIQKSRKIFVLMPHK 341
VL AC + +G + N ++D+ GR G + ++ + P
Sbjct: 521 VLYACSHGGLVDEGQKVFRVMTNEYRISPGIEHCTCMVDLLGRAGKLNEALDLISEFPQS 580
Query: 342 NLVS--WNVMISV 352
+ W ++S
Sbjct: 581 AIGPGVWGALLSA 593
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 104/255 (40%), Gaps = 51/255 (20%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G E V LF LM + V+P+ AC++L +G V+ +
Sbjct: 381 SWNAMISGYAQNGLTEMAVELFQLMQELNVQPNPTTISSTLSACAQLGALSLGTWVHRII 440
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
E ++ + V +LID YAKC + +
Sbjct: 441 AK------------------------------ENLELNVYVMTALIDMYAKCGSIAEARS 470
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ K++VSWNAM++GY L G E L M+ + P + + VL AC+
Sbjct: 471 IFDRMDNKNVVSWNAMISGYGLHGRGAEALKLYK--SMLDACILPTSSTFLSVLYACSHG 528
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V G+ + V+ + +S G C+C ++ R+G++ +
Sbjct: 529 GLVDEGQKVF-RVMTNEYRISP--GIEHCTC----------------MVDLLGRAGKLNE 569
Query: 272 ALDLLRDVIVANVKP 286
ALDL+ + + + P
Sbjct: 570 ALDLISEFPQSAIGP 584
>gi|147771209|emb|CAN67545.1| hypothetical protein VITISV_030949 [Vitis vinifera]
Length = 598
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 138/272 (50%), Gaps = 30/272 (11%)
Query: 111 IKCGRMEITSGLFE-----EMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWN 165
++ GR I + L +D V N+LI YA+ Y+ + F + +DLVSWN
Sbjct: 157 VEFGRFSIGNSLHSYCCKTSLDLKNEVRNALIHLYAEFEYMDAAAKLFHETNVRDLVSWN 216
Query: 166 AMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV- 224
M+AGYA +L EM + +++ + +SL +++AC + + +GKA+H ++
Sbjct: 217 TMIAGYAKNNDCRNAFSLFREMRI--GNVECDRVSLVSLISACTNXRDLHMGKAVHAFIK 274
Query: 225 ---LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALD 274
+ IH TA CG + VF++L+ ++ WNS+I +V G ++AL
Sbjct: 275 VSGMEMMIHFETALINMYSKCGSIELGRKVFDELADENIASWNSMIYGYVECGFNIEALS 334
Query: 275 LLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW------------NALIDMY 322
L + +KP+ VT++ ++ AC L QG+ S++ NALIDMY
Sbjct: 335 LWNVIQSRKIKPDEVTMLGLISACRSSGDLHQGIQINSYIESSDHLSGSTVLCNALIDMY 394
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+CG++ ++ +F MP ++++SW +I Y
Sbjct: 395 AKCGSMDRAETVFSKMPRRDVISWTSIIVGYA 426
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/315 (23%), Positives = 141/315 (44%), Gaps = 55/315 (17%)
Query: 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLF 123
DHFV + KAC+ L R G+ ++ +++
Sbjct: 39 DHFVYASLIKACNRLSAIREGRSIHCHVLRFG---------------------------- 70
Query: 124 EEMDQDFLVNNSLIDFYAKCRYLKVSHCK-FSKIKQKDLVSWNAMLAGYALGGFREEVTN 182
+D + V N+L+ Y+ C F KI +K +V+ N M++G+
Sbjct: 71 --LDYNVNVLNALVYLYSSAEKSMGCACALFDKIPEKTIVTVNCMISGFVKNKRFHAGVG 128
Query: 183 LLDEMEMIQTDM--QPNTISLSGVLAACAQVKGVKLGKAIHGY-----------VLRHHI 229
L + + D+ +PN ++L +++ C + +G ++H Y V I
Sbjct: 129 LFNRVLGGGFDLRVKPNYVTLVILISGCVEFGRFSIGNSLHSYCCKTSLDLKNEVRNALI 188
Query: 230 HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289
HL ++ + +F++ + RD+V WN++I+ + ++ +A L R++ + NV+ + V
Sbjct: 189 HLYAEFEYMDAAAKLFHETNVRDLVSWNTMIAGYAKNNDCRNAFSLFREMRIGNVECDRV 248
Query: 290 TIVSVLPACLKLAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLM 338
++VS++ AC L G +F+ ALI+MY +CG+I+ RK+F +
Sbjct: 249 SLVSLISACTNXRDLHMGKAVHAFIKVSGMEMMIHFETALINMYSKCGSIELGRKVFDEL 308
Query: 339 PHKNLVSWNVMISVY 353
+N+ SWN MI Y
Sbjct: 309 ADENIASWNSMIYGY 323
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/346 (23%), Positives = 149/346 (43%), Gaps = 57/346 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y +LF M V D + AC+ +D +GK V+
Sbjct: 214 SWNTMIAGYAKNNDCRNAFSLFREMRIGNVECDRVSLVSLISACTNXRDLHMGKAVH--- 270
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
FIK ME+ +LI+ Y+KC +++
Sbjct: 271 -----------------AFIKVSGMEMM----------IHFETALINMYSKCGSIELGRK 303
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +++ SWN+M+ GY GF E +L + ++ ++P+ +++ G+++AC
Sbjct: 304 VFDELADENIASWNSMIYGYVECGFNIEALSLWNVIQ--SRKIKPDEVTMLGLISACRSS 361
Query: 212 KGVKLGKAIHGYV-LRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSI 259
+ G I+ Y+ H+ ST CG + + +VF+++ RDV+ W SI
Sbjct: 362 GDLHQGIQINSYIESSDHLSGSTVLCNALIDMYAKCGSMDRAETVFSKMPRRDVISWTSI 421
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN--- 316
I + +G+ +AL R + ++PN+VT + VL AC + +G +
Sbjct: 422 IVGYAINGEGEEALLAFRKMGAEKIEPNSVTFLGVLSACDHAGLVDKGKNLYDIMCKYYH 481
Query: 317 ---------ALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
++DM+ R G ++++ K MP N V W ++I+
Sbjct: 482 IEPKIEHCGCMVDMHARAGMLEEAYKFVKDMPVEPNAVVWRMLINA 527
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 133/319 (41%), Gaps = 74/319 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
+ +G VHA + V G+E+ + L+ ++ +W SM+
Sbjct: 263 LHMGKAVHAFIKVSGMEMMIHFETALINMYSKCGSIELGRKVFDELADENIASWNSMIYG 322
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G+ E ++L+ ++ + ++PD + AC D G + Y+ S
Sbjct: 323 YVECGFNIEALSLWNVIQSRKIKPDEVTMLGLISACRSSGDLHQGIQINSYIES------ 376
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ + ++ N+LID YAKC + + FSK+ ++
Sbjct: 377 -----------------------SDHLSGSTVLCNALIDMYAKCGSMDRAETVFSKMPRR 413
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D++SW +++ GYA+ G EE LL +M ++PN+++ GVL+AC V GK
Sbjct: 414 DVISWTSIIVGYAINGEGEEA--LLAFRKMGAEKIEPNSVTFLGVLSACDHAGLVDKGKN 471
Query: 220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
++ + +++ H+ C C ++ R+G + +A ++D+
Sbjct: 472 LYDIMCKYY-HIEPKIEH--CGC----------------MVDMHARAGMLEEAYKFVKDM 512
Query: 280 IVANVKPNTVTIVSVLPAC 298
V+PN V ++ AC
Sbjct: 513 ---PVEPNAVVWRMLINAC 528
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 160/333 (48%), Gaps = 42/333 (12%)
Query: 58 DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRME 117
D V P+ F P V+KAC + R G+ V+ + + + V ++ +++ CG ME
Sbjct: 105 DCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVME 164
Query: 118 ITSGLF----------------EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
LF +D D ++ N +ID Y + L+V+ F ++ Q+ +
Sbjct: 165 DAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSV 224
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSWN M+AGYA G +E + EM+M ++ PN ++L VL A +++ ++LGK +H
Sbjct: 225 VSWNVMIAGYAQSGHFKEAVEVFREMQM--AEVPPNYVTLVSVLPAMSRLGALELGKWVH 282
Query: 222 GYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y +R++ I + CG + + VF L R+VV W++II+ G+
Sbjct: 283 LYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAK 342
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GLGTGSFVWNAL 318
D LD D+ A V P+ VT + +L AC + + GL + +
Sbjct: 343 DTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCM 402
Query: 319 IDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMI 350
+D+ GR G +++S ++ + MP K + V W ++
Sbjct: 403 VDLLGRAGLLEESEELILNMPIKPDDVIWKALL 435
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 144/318 (45%), Gaps = 78/318 (24%)
Query: 110 FIKCGRMEITSGLFEEMDQ-----DFLVNNSLIDFYAKCRYLKVSHCK--FSKIKQKDLV 162
F C M+ L +M + D L L+ F A + + + + F + + +
Sbjct: 18 FFPCKTMQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCF 77
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQT-DMQPNTISLSGVLAACAQVKGVKLGKAIH 221
S+N ++ AL + LL +EM++ ++PN + V AC + + ++ G+ +H
Sbjct: 78 SYNTLIR--ALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVH 135
Query: 222 G-----------YVLRHHIHLSTACGFV------------ICSC---------------- 242
G +V+ + + + +CG + + C
Sbjct: 136 GLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVL 195
Query: 243 ------------------SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV 284
++F+++ R VV WN +I+ + +SG +A+++ R++ +A V
Sbjct: 196 WNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEV 255
Query: 285 KPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRK 333
PN VT+VSVLPA +L AL G +G + +ALIDMY +CG+I+K+ +
Sbjct: 256 PPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQ 315
Query: 334 IFVLMPHKNLVSWNVMIS 351
+F +P +N+V+W+ +I+
Sbjct: 316 VFEGLPKRNVVTWSTIIA 333
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 87/195 (44%), Gaps = 32/195 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W M+ Y G+++E V +F M V P++ V A S L +GK V+ Y
Sbjct: 226 SWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYA 285
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + + L+D++ KCG +E +FE
Sbjct: 286 VRNNIGVDDVLGSALIDMYAKCGSIEKALQVFE--------------------------- 318
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+ ++++V+W+ ++AG A+ G ++ + ++ME + + P+ ++ G+L+AC+
Sbjct: 319 ---GLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDME--RAGVMPSDVTYIGLLSACSHA 373
Query: 212 KGVKLGKAIHGYVLR 226
V G+ +++R
Sbjct: 374 GLVNEGRWFFDHMVR 388
>gi|255539304|ref|XP_002510717.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551418|gb|EEF52904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 742
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 100/351 (28%), Positives = 170/351 (48%), Gaps = 36/351 (10%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKG---VRPDHFVCPKVYKACSELKDYRVGKDVY 88
+W SMM Y G YEE+V +F LMI V F C KAC L +++ ++
Sbjct: 90 SWNSMMSGYFRNGKYEEVVKVFVLMIRNFTCIVNLLSFSC--AMKACGALGCFKLAIQLH 147
Query: 89 DYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLV-NNSLIDFYAKCRYLK 147
F + ++ ++ ++IKCG +F + Q L NS++ Y+ +
Sbjct: 148 GLFEKFDFGSDKSIETSVMGMYIKCGAFTYADRVFLGIRQPSLFCFNSMLYCYSNSYGVG 207
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
+ F++I ++D VSW+ +++ + GF ++ +EM +PN+++ + VL+A
Sbjct: 208 KALDLFNRIPERDSVSWSTIISILSRHGFGVPTLSMF--IEMWTQGFRPNSMTFACVLSA 265
Query: 208 CAQVKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVW 256
C + ++ G +H ++R I ++ CG + + VFN L+ + V W
Sbjct: 266 CTSIHDLEWGAHLHARIIRKEIILDDYVGNGLVYMYAKCGHLKFARRVFNSLTEHNAVSW 325
Query: 257 NSIISAFVRSGQVVDALDL---LRDVIVANVKPNTVTIVSVLPAC---------LKLAAL 304
S+I+ R G +AL L +R+V+VA + T +VL C +L AL
Sbjct: 326 TSLINGVARCGLKEEALLLFNKMREVLVA---LDEFTFATVLKVCSHPNFNFTGRQLHAL 382
Query: 305 PQGLGTGSFVW--NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G GS V NALI MY +CG QK+ +F +MP +N++SW MI+ +
Sbjct: 383 TTKTGMGSIVTVGNALITMYSKCGDTQKADCVFKMMPVRNIISWTSMITAF 433
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 92/376 (24%), Positives = 158/376 (42%), Gaps = 85/376 (22%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W++++ + + G+ +++F M +G RP+ V AC+ + D G ++ +
Sbjct: 223 SWSTIISILSRHGFGVPTLSMFIEMWTQGFRPNSMTFACVLSACTSIHDLEWGAHLHARI 282
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I +E+ D V N L+ YAKC +LK +
Sbjct: 283 IR------------------------------KEIILDDYVGNGLVYMYAKCGHLKFARR 312
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ + + + VSW +++ G A G +EE L ++M + + + + + VL C+
Sbjct: 313 VFNSLTEHNAVSWTSLINGVARCGLKEEALLLFNKMREVLVAL--DEFTFATVLKVCSHP 370
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
G+ +H + I + + CG + VF + R+++ W S+I
Sbjct: 371 NFNFTGRQLHALTTKTGMGSIVTVGNALITMYSKCGDTQKADCVFKMMPVRNIISWTSMI 430
Query: 261 SAFVRSGQVVDALDLL-----RDVIVAN--------------------------VKPNTV 289
+AF ++G A R+VI N + P+ +
Sbjct: 431 TAFSQAGYFRKAQACFNKMPERNVITWNSMISMYIQHGFQEWGLKLYVRMQRERIAPDDI 490
Query: 290 TIVSVLPACLKLAALPQG---------LGTGS--FVWNALIDMYGRCGAIQKSRKIFVLM 338
T + + AC LA L G LG GS V N+L+ MY RCG I+++RK F L+
Sbjct: 491 TFATSISACADLAMLKLGNQIVAQAEKLGFGSDVSVANSLVTMYSRCGQIEEARKAFDLV 550
Query: 339 PHKNLVSWNVMISVYG 354
KNLVSWN MI+ Y
Sbjct: 551 SMKNLVSWNSMIAGYA 566
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/372 (20%), Positives = 165/372 (44%), Gaps = 58/372 (15%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G +HA +I + L ++G+ L+ ++ +WTS++
Sbjct: 272 LEWGAHLHARIIRKEIILDDYVGNGLVYMYAKCGHLKFARRVFNSLTEHNAVSWTSLING 331
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
G EE + LF M + V D F V K CS G+ ++
Sbjct: 332 VARCGLKEEALLLFNKMREVLVALDEFTFATVLKVCSHPNFNFTGRQLHALTTKTGMGSI 391
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
V L+ ++ KCG + +F+ M ++ + S+I +++ Y + + F+K+ +
Sbjct: 392 VTVGNALITMYSKCGDTQKADCVFKMMPVRNIISWTSMITAFSQAGYFRKAQACFNKMPE 451
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+++++WN+M++ Y GF+E L M+ + + P+ I+ + ++ACA + +KLG
Sbjct: 452 RNVITWNSMISMYIQHGFQEWGLKLYVRMQ--RERIAPDDITFATSISACADLAMLKLGN 509
Query: 219 AIHGY-----------VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
I V + + + CG + + F+ +S +++V WNS+I+ + ++G
Sbjct: 510 QIVAQAEKLGFGSDVSVANSLVTMYSRCGQIEEARKAFDLVSMKNLVSWNSMIAGYAQNG 569
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGA 327
A+++ ++++ P+ ++ +SVL D+ GR G
Sbjct: 570 HGRVAIEVFKNMLEMEYIPDHISYLSVLS-----------------------DLLGRAGL 606
Query: 328 IQKSRKIFVLMP 339
+++++ + MP
Sbjct: 607 LEQAKNLIDDMP 618
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 134/323 (41%), Gaps = 55/323 (17%)
Query: 83 VGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYA 141
+ + ++ +IS + + LL++++ C +F +M ++ N++I +
Sbjct: 9 IARKLHAQLISTGLYISIFLHNHLLNMYLNCHLTHDACRVFADMTFRNVFSYNTMITGLS 68
Query: 142 KCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISL 201
K + + F ++ ++D VSWN+M++GY G EEV + M T + N +S
Sbjct: 69 KAEQIDKAKKVFDEMPERDSVSWNSMMSGYFRNGKYEEVVKVFVLMIRNFTCI-VNLLSF 127
Query: 202 SGVLAACAQVKGVKLGKAIHGYVLR------HHIHLSTACGFVIC--------------- 240
S + AC + KL +HG + I S ++ C
Sbjct: 128 SCAMKACGALGCFKLAIQLHGLFEKFDFGSDKSIETSVMGMYIKCGAFTYADRVFLGIRQ 187
Query: 241 ---------------------SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
+ +FN++ RD V W++IIS R G V L + ++
Sbjct: 188 PSLFCFNSMLYCYSNSYGVGKALDLFNRIPERDSVSWSTIISILSRHGFGVPTLSMFIEM 247
Query: 280 IVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAI 328
+PN++T VL AC + L G + +V N L+ MY +CG +
Sbjct: 248 WTQGFRPNSMTFACVLSACTSIHDLEWGAHLHARIIRKEIILDDYVGNGLVYMYAKCGHL 307
Query: 329 QKSRKIFVLMPHKNLVSWNVMIS 351
+ +R++F + N VSW +I+
Sbjct: 308 KFARRVFNSLTEHNAVSWTSLIN 330
>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 858
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 102/392 (26%), Positives = 173/392 (44%), Gaps = 75/392 (19%)
Query: 5 IQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNVL 43
+++HAHLI G L + L+ ++ +W+S++ Y
Sbjct: 1 MELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQN 60
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G+ EE + +F M GV+ + F P V KACS +D +G+ V+ + FE + V
Sbjct: 61 GFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVA 120
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
L+ ++ KCG ++ + L F I ++++VS
Sbjct: 121 NTLVVMYAKCGLLDDSRRL------------------------------FGGIVERNVVS 150
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
WNA+ + Y E L EM+++ + PN S+S +L ACA ++ LG+ IHG
Sbjct: 151 WNALFSCYVQSELCGEAVGLFK--EMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGL 208
Query: 224 VLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
+L+ + L + G + + +VF ++ DVV WN+II+ V A
Sbjct: 209 MLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLA 268
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNALIDM 321
L LL ++ + +PN T+ S L AC + G S F L+DM
Sbjct: 269 LMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDM 328
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
Y +C + +R+ + MP K++++WN +IS Y
Sbjct: 329 YSKCEMMDDARRAYDSMPKKDIIAWNALISGY 360
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/396 (22%), Positives = 180/396 (45%), Gaps = 75/396 (18%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLG--YYEEIV--------- 50
+LG ++H ++ G++L F + L++++ + G V + ++V
Sbjct: 200 DLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGC 259
Query: 51 ------NLFYLMIDK----GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+L +++D+ G RP+ F KAC+ + +G+ ++ +I
Sbjct: 260 VLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLI-------- 311
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
+M+ S LF + L+D Y+KC + + + + +KD
Sbjct: 312 --------------KMDAHSDLFAAV--------GLVDMYSKCEMMDDARRAYDSMPKKD 349
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+++WNA+++GY+ G + +L +M D+ N +LS VL + A ++ +K+ K I
Sbjct: 350 IIAWNALISGYSQCGDHLDAVSLFS--KMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQI 407
Query: 221 HG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H YV+ + C + + +F + + D+V + S+I+A+ + G
Sbjct: 408 HTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDG 467
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNAL 318
+AL L + A++KP+ S+L AC L+A Q G F N+L
Sbjct: 468 EEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSL 527
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
++MY +CG+I+ + + F +P++ +VSW+ MI Y
Sbjct: 528 VNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYA 563
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/382 (22%), Positives = 164/382 (42%), Gaps = 76/382 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMY 40
ELG Q+H+ LI F L++++ W +++ Y
Sbjct: 301 ELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGY 360
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+ G + + V+LF M + + + V K+ + L+ +V K ++ ISIK
Sbjct: 361 SQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIH--TISIK----- 413
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
SG++ DF V NSL+D Y KC ++ + F + +D
Sbjct: 414 -------------------SGIY----SDFYVINSLLDTYGKCNHIDEASKIFEERTWED 450
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
LV++ +M+ Y+ G EE L ++M D++P+ S +L ACA + + GK +
Sbjct: 451 LVAYTSMITAYSQYGDGEEALKLY--LQMQDADIKPDPFICSSLLNACANLSAYEQGKQL 508
Query: 221 HGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H + ++ +++ CG + + F+++ R +V W+++I + + G
Sbjct: 509 HVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHG 568
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GLGTGSFVWNA 317
+AL L ++ V PN +T+VSVL AC + + G+ +
Sbjct: 569 KEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYAC 628
Query: 318 LIDMYGRCGAIQKSRKIFVLMP 339
+ID+ GR G + ++ ++ +P
Sbjct: 629 MIDLLGRSGKLNEAVELVNSIP 650
>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 161/322 (50%), Gaps = 31/322 (9%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLF--YLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
+W +++ Y G + E + L+ + +D G + F V C +LK+ ++ K V+
Sbjct: 162 SWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGF--NAFSFAGVLILCVKLKELQLAKQVHG 219
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKV 148
++ F N + ++D + KCG M LF+EM +D +++ YAK +
Sbjct: 220 QVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNS 279
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
+ F ++ +K+ VSW+A+++GYA E + +M++ + P + S L AC
Sbjct: 280 ASELFHQMPEKNPVSWSALISGYARNSLGHEALDYF--TKMMKFGINPEQYTFSSCLCAC 337
Query: 209 AQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTR-DVVVW 256
A + +K GK +HGY++R + I + + CG + SC VF+ + + DVVVW
Sbjct: 338 ASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVW 397
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL-------- 308
N++ISA ++G A+ + D++ + +KP+ +T + +L AC + +GL
Sbjct: 398 NTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTY 457
Query: 309 GTGSFV----WNALIDMYGRCG 326
G F ++ LID+ GR G
Sbjct: 458 DHGVFPDQEHYSCLIDLLGRAG 479
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 167/365 (45%), Gaps = 58/365 (15%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE-GNACV 102
G E ++ + +GVR + + + C++ K ++ GK V+ ++ F+ V
Sbjct: 41 GRLPEALSYLDRLAQRGVRLPTGIFVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRPTTIV 100
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
L+ ++ +CGR +F++M ++ N ++ YAK + + F ++ +KD+
Sbjct: 101 ANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDV 160
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSWN ++ YA G E L + + DM N S +GVL C ++K ++L K +H
Sbjct: 161 VSWNTIVLAYAKQGCFNEAIGLYRDFRRL--DMGFNAFSFAGVLILCVKLKELQLAKQVH 218
Query: 222 GYVL----RHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
G VL ++ LS++ CG + C+ ++F+++ +D+ W +I+S + + G +
Sbjct: 219 GQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMN 278
Query: 271 -------------------------------DALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ALD ++ + P T S L AC
Sbjct: 279 SASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACA 338
Query: 300 KLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWN 347
+AAL G + V ++LIDMY +CG ++ S +F LM +K ++V WN
Sbjct: 339 SIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWN 398
Query: 348 VMISV 352
MIS
Sbjct: 399 TMISA 403
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 114/275 (41%), Gaps = 52/275 (18%)
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFL-----VNNSLIDFYAKCRYLKVSHCKFSK 155
C+ + LLDL + GR+ + + Q + + L+ AK +Y K C
Sbjct: 29 CIAQSLLDLSSQ-GRLPEALSYLDRLAQRGVRLPTGIFVDLLRLCAKAKYFKGGKCVHLH 87
Query: 156 IKQKDLVSWNAMLAGYALGGFRE-----EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+K ++A + +G + E E + D+M + N S + +LA A+
Sbjct: 88 LKHTGFKRPTTIVANHLIGMYFECGRDVEARKVFDKMSV------RNLYSWNHMLAGYAK 141
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
+ V + + F+++ +DVV WN+I+ A+ + G
Sbjct: 142 LGDVNNARKL------------------------FDRMMEKDVVSWNTIVLAYAKQGCFN 177
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNALI 319
+A+ L RD ++ N + VL C+KL L G + + ++++
Sbjct: 178 EAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIV 237
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
D Y +CG ++ +R +F M K++ +W ++S Y
Sbjct: 238 DAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYA 272
>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
Length = 928
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/344 (25%), Positives = 159/344 (46%), Gaps = 54/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTS+M Y+ G EE+++++ M +GV + V +C LKD +G+ + +
Sbjct: 110 SWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQV 169
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ E V+ L+ + G ++ + +F++M
Sbjct: 170 VKSGLESKLAVENSLISMLGSMGNVDYANYIFDQM------------------------- 204
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
++D +SWN++ A YA G EE + M ++ N+ ++S +L+ V
Sbjct: 205 -----SERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEV--NSTTVSTLLSVLGHV 257
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
K G+ IHG V++ + + G + + VF Q+ T+D++ WNS++
Sbjct: 258 DHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLM 317
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQGLG 309
++FV G+ +DAL LL +I + N VT S L AC L + GL
Sbjct: 318 ASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLF 377
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ NAL+ MYG+ G + +SR++ + MP +++V+WN +I Y
Sbjct: 378 YNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGY 421
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 142/344 (41%), Gaps = 55/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S+ Y G+ EE +F LM + + + + G+ ++ +
Sbjct: 211 SWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLV 270
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + F+ CV LL ++ GR V +L+
Sbjct: 271 VKMGFDSVVCVCNTLLRMYAGAGRS---------------VEANLV-------------- 301
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ KDL+SWN+++A + G + LL MI + N ++ + LAAC
Sbjct: 302 -FKQMPTKDLISWNSLMASFVNDGRSLDALGLL--CSMISSGKSVNYVTFTSALAACFTP 358
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSC-----------SVFNQLSTRDVVVWNSII 260
+ G+ +HG V+ + + G + S V Q+ RDVV WN++I
Sbjct: 359 DFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALI 418
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GL 308
+ AL + + V V N +T+VSVL ACL L + G
Sbjct: 419 GGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGF 478
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+ V N+LI MY +CG + S+ +F + ++N+++WN M++
Sbjct: 479 ESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAA 522
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/345 (23%), Positives = 147/345 (42%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD-YRVGKDVYDY 90
+W +MM +G Y E + F M D G++P FV + AC +R G V+ +
Sbjct: 8 SWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGF 67
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ + V +L L+ G + + +FEEM
Sbjct: 68 VAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM------------------------ 103
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+++VSW +++ GY+ G EEV ++ M N++SL V+++C
Sbjct: 104 ------PDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSL--VISSCGL 155
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTAC-----------GFVICSCSVFNQLSTRDVVVWNSI 259
+K LG+ I G V++ + A G V + +F+Q+S RD + WNSI
Sbjct: 156 LKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSI 215
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW---- 315
+A+ ++G + ++ + + + + N+ T+ ++L + G G V
Sbjct: 216 AAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGF 275
Query: 316 -------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
N L+ MY G ++ +F MP K+L+SWN +++ +
Sbjct: 276 DSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASF 320
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 133/274 (48%), Gaps = 37/274 (13%)
Query: 110 FIKCGR----MEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWN 165
F + GR + + SGLF ++ N+L+ Y K + S ++ ++D+V+WN
Sbjct: 360 FFEKGRILHGLVVVSGLFYNQ----IIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWN 415
Query: 166 AMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNTISLSGVLAACAQVKG--VKLGKAIHG 222
A++ GYA E+ L + ++ + + N I++ VL+AC + G ++ GK +H
Sbjct: 416 ALIGGYAED---EDPDKALAAFQTMRVEGVSSNYITVVSVLSACL-LPGDLLERGKPLHA 471
Query: 223 YVLR------HHIHLS-----TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
Y++ H+ S CG + S +FN L R+++ WN++++A G +
Sbjct: 472 YIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEE 531
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LG--TGSFVWNALID 320
L L+ + V + + L A KLA L +G LG SF++NA D
Sbjct: 532 VLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAAD 591
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
MY +CG I + K+ +++L SWN++IS G
Sbjct: 592 MYSKCGEIGEVVKMLPPSVNRSLPSWNILISALG 625
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 140/344 (40%), Gaps = 57/344 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY-RVGKDVYDYM 91
W +++G Y ++ + F M +GV ++ V AC D GK ++ Y+
Sbjct: 414 WNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYI 473
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+S FE + VK NSLI YAKC L S
Sbjct: 474 VSAGFESDEHVK------------------------------NSLITMYAKCGDLSSSQD 503
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ + +++++WNAMLA A G EEV L+ +M + + S S L+A A++
Sbjct: 504 LFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSL--DQFSFSEGLSAAAKL 561
Query: 212 KGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ G+ +HG ++ + + CG + + R + WN +I
Sbjct: 562 AVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILI 621
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA--- 317
SA R G + +++ +KP VT VS+L AC + +GL +
Sbjct: 622 SALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGL 681
Query: 318 ---------LIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMIS 351
+ID+ GR G + ++ MP K N + W +++
Sbjct: 682 EPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLA 725
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 12/118 (10%)
Query: 248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL--- 304
+ R+ V WN+++S VR G ++ ++ R + +KP++ I S++ AC + ++
Sbjct: 1 MPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFRE 60
Query: 305 ---------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
GL + +V A++ +YG G + SRK+F MP +N+VSW ++ Y
Sbjct: 61 GVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGY 118
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/329 (19%), Positives = 122/329 (37%), Gaps = 77/329 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G +HA+++ G E + + L+ ++ W +M+
Sbjct: 463 LERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAA 522
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
G+ EE++ L M GV D F + A ++L G+ ++ + + FE +
Sbjct: 523 NAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHD 582
Query: 100 ACVKRPLLDLFIKCGRM-EITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
+ + D++ KCG + E+ L ++
Sbjct: 583 SFIFNAAADMYSKCGEIGEVVKMLPPSVN------------------------------- 611
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+ L SWN +++ G+ EEV EM++ ++P ++ +L AC+ V G
Sbjct: 612 RSLPSWNILISALGRHGYFEEVCATFH--EMLEMGIKPGHVTFVSLLTACSHGGLVDKGL 669
Query: 219 AIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRD 278
A + + R L A IC +I RSG++ +A +
Sbjct: 670 AYYDMIAR-DFGLEPAIEHCIC------------------VIDLLGRSGRLAEAETFISK 710
Query: 279 VIVANVKPNTVTIVSVLPACLKLAALPQG 307
+ +KPN + S+L +C L +G
Sbjct: 711 M---PMKPNDLVWRSLLASCKIHGNLDRG 736
>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
Length = 937
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/344 (25%), Positives = 159/344 (46%), Gaps = 54/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTS+M Y+ G EE+++++ M +GV + V +C LKD +G+ + +
Sbjct: 127 SWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQV 186
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ E V+ L+ + G ++ + +F++M
Sbjct: 187 VKSGLESKLAVENSLISMLGSMGNVDYANYIFDQM------------------------- 221
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
++D +SWN++ A YA G EE + M ++ N+ ++S +L+ V
Sbjct: 222 -----SERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEV--NSTTVSTLLSVLGHV 274
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
K G+ IHG V++ + + G + + VF Q+ T+D++ WNS++
Sbjct: 275 DHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLM 334
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQGLG 309
++FV G+ +DAL LL +I + N VT S L AC L + GL
Sbjct: 335 ASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLF 394
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ NAL+ MYG+ G + +SR++ + MP +++V+WN +I Y
Sbjct: 395 YNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGY 438
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 142/344 (41%), Gaps = 55/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S+ Y G+ EE +F LM + + + + G+ ++ +
Sbjct: 228 SWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLV 287
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + F+ CV LL ++ GR V +L+
Sbjct: 288 VKMGFDSVVCVCNTLLRMYAGAGRS---------------VEANLV-------------- 318
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ KDL+SWN+++A + G + LL MI + N ++ + LAAC
Sbjct: 319 -FKQMPTKDLISWNSLMASFVNDGRSLDALGLL--CSMISSGKSVNYVTFTSALAACFTP 375
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSC-----------SVFNQLSTRDVVVWNSII 260
+ G+ +HG V+ + + G + S V Q+ RDVV WN++I
Sbjct: 376 DFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALI 435
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GL 308
+ AL + + V V N +T+VSVL ACL L + G
Sbjct: 436 GGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGF 495
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+ V N+LI MY +CG + S+ +F + ++N+++WN M++
Sbjct: 496 ESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAA 539
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/345 (23%), Positives = 147/345 (42%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD-YRVGKDVYDY 90
+W +MM +G Y E + F M D G++P FV + AC +R G V+ +
Sbjct: 25 SWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGF 84
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ + V +L L+ G + + +FEEM
Sbjct: 85 VAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM------------------------ 120
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+++VSW +++ GY+ G EEV ++ M N++SL V+++C
Sbjct: 121 ------PDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSL--VISSCGL 172
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTAC-----------GFVICSCSVFNQLSTRDVVVWNSI 259
+K LG+ I G V++ + A G V + +F+Q+S RD + WNSI
Sbjct: 173 LKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSI 232
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW---- 315
+A+ ++G + ++ + + + + N+ T+ ++L + G G V
Sbjct: 233 AAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGF 292
Query: 316 -------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
N L+ MY G ++ +F MP K+L+SWN +++ +
Sbjct: 293 DSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASF 337
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 134/274 (48%), Gaps = 37/274 (13%)
Query: 110 FIKCGR----MEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWN 165
F + GR + + SGLF + ++ N+L+ Y K + S ++ ++D+V+WN
Sbjct: 377 FFEKGRILHGLVVVSGLF----YNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWN 432
Query: 166 AMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNTISLSGVLAACAQVKG--VKLGKAIHG 222
A++ GYA E+ L + ++ + + N I++ VL+AC + G ++ GK +H
Sbjct: 433 ALIGGYAED---EDPDKALAAFQTMRVEGVSSNYITVVSVLSACL-LPGDLLERGKPLHA 488
Query: 223 YVLR------HHIHLS-----TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
Y++ H+ S CG + S +FN L R+++ WN++++A G +
Sbjct: 489 YIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEE 548
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LG--TGSFVWNALID 320
L L+ + V + + L A KLA L +G LG SF++NA D
Sbjct: 549 VLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAAD 608
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
MY +CG I + K+ +++L SWN++IS G
Sbjct: 609 MYSKCGEIGEVVKMLPPSVNRSLPSWNILISALG 642
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 140/344 (40%), Gaps = 57/344 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY-RVGKDVYDYM 91
W +++G Y ++ + F M +GV ++ V AC D GK ++ Y+
Sbjct: 431 WNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYI 490
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+S FE + VK NSLI YAKC L S
Sbjct: 491 VSAGFESDEHVK------------------------------NSLITMYAKCGDLSSSQD 520
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ + +++++WNAMLA A G EEV L+ +M + + S S L+A A++
Sbjct: 521 LFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSL--DQFSFSEGLSAAAKL 578
Query: 212 KGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ G+ +HG ++ + + CG + + R + WN +I
Sbjct: 579 AVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILI 638
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA--- 317
SA R G + +++ +KP VT VS+L AC + +GL +
Sbjct: 639 SALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGL 698
Query: 318 ---------LIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMIS 351
+ID+ GR G + ++ MP K N + W +++
Sbjct: 699 EPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLA 742
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 108/237 (45%), Gaps = 25/237 (10%)
Query: 140 YAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI 199
Y K +K + F + ++ VSWN M++G G E +M ++P++
Sbjct: 2 YTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFF--RKMCDLGIKPSSF 59
Query: 200 SLSGVLAACAQVKGV-KLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQ 247
++ ++ AC + + + G +HG+V + +HL G V CS VF +
Sbjct: 60 VIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEE 119
Query: 248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC--LKLAALP 305
+ R+VV W S++ + G+ + +D+ + + V N ++ V+ +C LK +L
Sbjct: 120 MPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLG 179
Query: 306 Q---------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ GL + V N+LI M G G + + IF M ++ +SWN + + Y
Sbjct: 180 RQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAY 236
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/329 (19%), Positives = 122/329 (37%), Gaps = 77/329 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G +HA+++ G E + + L+ ++ W +M+
Sbjct: 480 LERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAA 539
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
G+ EE++ L M GV D F + A ++L G+ ++ + + FE +
Sbjct: 540 NAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHD 599
Query: 100 ACVKRPLLDLFIKCGRM-EITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
+ + D++ KCG + E+ L ++
Sbjct: 600 SFIFNAAADMYSKCGEIGEVVKMLPPSVN------------------------------- 628
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+ L SWN +++ G+ EEV EM++ ++P ++ +L AC+ V G
Sbjct: 629 RSLPSWNILISALGRHGYFEEVCATFH--EMLEMGIKPGHVTFVSLLTACSHGGLVDKGL 686
Query: 219 AIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRD 278
A + + R L A IC +I RSG++ +A +
Sbjct: 687 AYYDMIAR-DFGLEPAIEHCIC------------------VIDLLGRSGRLAEAETFISK 727
Query: 279 VIVANVKPNTVTIVSVLPACLKLAALPQG 307
+ +KPN + S+L +C L +G
Sbjct: 728 M---PMKPNDLVWRSLLASCKIHGNLDRG 753
>gi|147828480|emb|CAN64316.1| hypothetical protein VITISV_027915 [Vitis vinifera]
Length = 841
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 110/397 (27%), Positives = 192/397 (48%), Gaps = 62/397 (15%)
Query: 6 QVHAHLIVCGV-ELCAFLGSQLLEVFCNWTSMMGMY--NVL------------------- 43
QVHA +++ G+ L L Q+L N+++ + Y +VL
Sbjct: 18 QVHALILIHGLSHLEPILARQILJSASNYSATVAQYVHSVLHHSKSPDSFSWACAIRFST 77
Query: 44 --GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGK-DVYDYMISIKFEGNA 100
G ++E L+ M G+ P F KAC+ + YR+G ++ + F G
Sbjct: 78 QHGQFKEAFALYVQMQRWGLWPTTFALSSALKACARIA-YRMGGLSIHGQVQKFGFSGGG 136
Query: 101 ---CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKI 156
V+ L+D + K G MEI +F+EM + +V+ NS++ Y K L V+ F +I
Sbjct: 137 DGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEI 196
Query: 157 KQKDLVSWNAMLAGYALGGFREEVTNLLDEME---------MIQTDMQPNTI-SLSGVLA 206
QKD++SWN+M++GYA G E+ +L +M MI ++ I S
Sbjct: 197 PQKDVISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDIDSARSFFD 256
Query: 207 ACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
A Q V I GY + CG V +C +F+Q+ +D++++N++I+ + ++
Sbjct: 257 AMPQXNNVSWMTMISGY---------SKCGDVDSACELFDQVGGKDLLLFNAMIACYAQN 307
Query: 267 GQVVDALDLLRDVIVA--NVKPNTVTIVSVLPACLKLAALPQGLGTGSF----------- 313
+ +AL L +++ NV+P+ +T+ SV+ AC +L L G S+
Sbjct: 308 SRPKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGH 367
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ AL+D+Y +CG+I K+ ++F + K+LV++ MI
Sbjct: 368 LATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMI 404
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 132/269 (49%), Gaps = 29/269 (10%)
Query: 97 EGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNN----SLIDFYAKCRYLKVSHCK 152
E N ++ +++ G ++ F+ M Q NN ++I Y+KC + +
Sbjct: 229 ERNFASWNAMISGYVEFGDIDSARSFFDAMPQ---XNNVSWMTMISGYSKCGDVDSACEL 285
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ KDL+ +NAM+A YA +E L + M ++QP+ ++L+ V++AC+Q+
Sbjct: 286 FDQVGGKDLLLFNAMIACYAQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLG 345
Query: 213 GVKLGKAIHGYVLRHHI----HLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ G I Y+ R I HL+TA CG + + +F+ L +D+V + ++I
Sbjct: 346 DLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMIL 405
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGT 310
+G+ +DA+ L +++ A + PN +T + +L A + +G L
Sbjct: 406 GCGINGKAIDAIKLFDEMVDAQIFPNLITFIGLLTAYNHAGLVEEGYRCFTSMKKYNLVP 465
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+ ++D+ GR G +Q++ ++ MP
Sbjct: 466 SVDHYGIMVDLLGRAGRLQEALELIKSMP 494
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 101/222 (45%), Gaps = 21/222 (9%)
Query: 150 HCKFSKIKQKDLVSWN-AMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
H K D SW A+ G F+E + +M + + P T +LS L AC
Sbjct: 55 HSVLHHSKSPDSFSWACAIRFSTQHGQFKEAFALYV---QMQRWGLWPTTFALSSALKAC 111
Query: 209 AQVKGVKLGKAIHGYVLR-------HHIHLSTAC-------GFVICSCSVFNQLSTRDVV 254
A++ G +IHG V + I++ TA G + + +F++++ R+VV
Sbjct: 112 ARIAYRMGGLSIHGQVQKFGFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVV 171
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA--CLKLAALPQGLGTGS 312
WNS+++ +++SG +V A + ++ +V I A K +L Q + +
Sbjct: 172 SWNSMLAGYLKSGDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKALSLFQQMPERN 231
Query: 313 FV-WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
F WNA+I Y G I +R F MP N VSW MIS Y
Sbjct: 232 FASWNAMISGYVEFGDIDSARSFFDAMPQXNNVSWMTMISGY 273
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 77/185 (41%), Gaps = 39/185 (21%)
Query: 197 NTISLSGVLAACAQVKGVKLGKAIHGYVLRH---HIHLSTACGFVICSC----------- 242
+TISLS VK K +H +L H H+ A +J +
Sbjct: 7 STISLS-----------VKQAKQVHALILIHGLSHLEPILARQILJSASNYSATVAQYVH 55
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
SV + + D W I + GQ +A L + + P T + S L AC ++A
Sbjct: 56 SVLHHSKSPDSFSWACAIRFSTQHGQFKEAFALYVQMQRWGLWPTTFALSSALKACARIA 115
Query: 303 ALPQGL--------------GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
GL G G +V AL+D Y + G ++ +RK+F M +N+VSWN
Sbjct: 116 YRMGGLSIHGQVQKFGFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNS 175
Query: 349 MISVY 353
M++ Y
Sbjct: 176 MLAGY 180
>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Brachypodium distachyon]
Length = 1430
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 101/399 (25%), Positives = 175/399 (43%), Gaps = 65/399 (16%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNVLG 44
Q+H H+ + LG+ L++V+ N W ++ Y++ G
Sbjct: 172 QLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAISWNVIVRRYHLAG 231
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
+ V++F+ M+ GVRP + AC + G+ ++ +++ +E + V+
Sbjct: 232 MGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGYEHHVHVRS 291
Query: 105 PLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
++D++ KCG M+ LF +D +++ S++ A C + + F +K+++LVS
Sbjct: 292 SVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNLVS 351
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
WNAML GY + LL +M Q + + I+L VL+AC + + G+ +H +
Sbjct: 352 WNAMLTGYIRS--MDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKGEEVHAF 409
Query: 224 VLRHHIHLSTACGFVI--------------CSC-------SVFNQLSTRDVVVWNSIISA 262
++ CGF C C +F S RD WNS+IS
Sbjct: 410 AIK--------CGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISG 461
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF--------- 313
+ R AL L + + V PN T S L AC + L QG+ ++
Sbjct: 462 YERHSMSEAALYALTK-MQSEVTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEID 520
Query: 314 --VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ + LIDMY +C S +IF P ++++ WN MI
Sbjct: 521 DILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMI 559
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/400 (24%), Positives = 177/400 (44%), Gaps = 55/400 (13%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G+QVHA + ++GS LL+++ +W S++ Y
Sbjct: 911 GVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQ 970
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI-SIKFEGNAC 101
G E + LF M+ G PD V AC+ L R G+ V+ ++ S +F +
Sbjct: 971 NGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMV 1030
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKIKQKD 160
+ L+D++ KCGR +F+ M +V+ SLI YA+ ++ + FS++ +K+
Sbjct: 1031 LSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVEKN 1090
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+++WN ++A YA G EE L + + + + P + VL AC V ++LG+
Sbjct: 1091 VIAWNVLIAAYAQNGEEEEALRLF--VRLKRESVWPTHYTYGNVLNACGNVADLQLGQQA 1148
Query: 221 HGYVLRHH-----------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAF 263
H +VL+ + + G + VF +++ RD V WN++I
Sbjct: 1149 HVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGH 1208
Query: 264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC------------LKLAALPQGLGTG 311
++G+ DAL L ++ + P++VT++ VL AC + G+
Sbjct: 1209 AQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHGIIPS 1268
Query: 312 SFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ +ID+ GR G +++ ++ M + V W ++
Sbjct: 1269 QDHYTCMIDLLGRAGHLKEVEELIKEMSMEPDAVLWASLL 1308
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 126/273 (46%), Gaps = 26/273 (9%)
Query: 106 LLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
L+ + + GR+ +F+E+ + N+L+ +A+ + F I D S+
Sbjct: 801 LVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAIPDPDQCSY 860
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
NA++A AL LL M D N S + L+ACA K + G +H V
Sbjct: 861 NAVIA--ALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGVQVHALV 918
Query: 225 LR----HHIHLSTACGFVICSCS-------VFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
+ +++ +A + C VF + R++V WNS+I+ + ++G V +AL
Sbjct: 919 SKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQNGPVGEAL 978
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNALIDM 321
L ++ A P+ VT+ SV+ AC LAA +G + V NAL+DM
Sbjct: 979 VLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVLSNALVDM 1038
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
Y +CG + +R +F M +++VS +I+ Y
Sbjct: 1039 YAKCGRTRAARCVFDRMASRSVVSETSLITGYA 1071
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 115/280 (41%), Gaps = 42/280 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y + LF M + D V AC+ + D G++V+ +
Sbjct: 351 SWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKGEEVHAFA 410
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I F + +K L+ ++ KCG + L
Sbjct: 411 IKCGFFSSPILKNALVRMYSKCGCLRSAERLL---------------------------- 442
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++D SWN++++GY E L +M Q+++ PN + S LAACA +
Sbjct: 443 LFEMGSERDSYSWNSLISGYERHSMSEAALYALTKM---QSEVTPNQSTFSSALAACANI 499
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVI----CSCS-------VFNQLSTRDVVVWNSII 260
+K G IH Y++R + V+ C C +F +RDV++WNS+I
Sbjct: 500 FLLKQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMI 559
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
SG+ LDL ++ +K ++VT + L +C+
Sbjct: 560 FGCAYSGKGEYGLDLFDEMQKQGIKADSVTFLGALVSCIS 599
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 112/244 (45%), Gaps = 25/244 (10%)
Query: 130 FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
FL N + I+ A C + + F + +D SWNA++ + G E +L M
Sbjct: 86 FLFNRA-IESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNS 144
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH----LSTACGFVICSC--- 242
+ ++P +++ VL+ CA+ + + +HG++ + L TA V +C
Sbjct: 145 L--GIRPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLL 202
Query: 243 ----SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
F+ + + + WN I+ + +G A+D+ ++ A V+P T+ + AC
Sbjct: 203 ADARRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLAC 262
Query: 299 LKLAALPQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
AL +G +FV ++++DMY +CGA+ ++ +F L P K++V
Sbjct: 263 RDNNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMST 322
Query: 348 VMIS 351
++S
Sbjct: 323 SIVS 326
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 223 YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
++ I ACG V + +F+ + RD WN+II+A R+G +AL L ++
Sbjct: 86 FLFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSL 145
Query: 283 NVKPNTVTIVSVL---PACLKLAALPQGLG--------TGSFVWNALIDMYGRCGAIQKS 331
++P T+ SVL CL L Q G + + AL+D+YG C + +
Sbjct: 146 GIRPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADA 205
Query: 332 RKIFVLMPHKNLVSWNVMISVY 353
R+ F + N +SWNV++ Y
Sbjct: 206 RRAFDDILEPNAISWNVIVRRY 227
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 89/239 (37%), Gaps = 56/239 (23%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC-----------------------NWTSMMGMY 40
G +VHA I CG L + L+ ++ +W S++ Y
Sbjct: 403 GEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGY 462
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
E + M + V P+ AC+ + + G ++ YMI +E
Sbjct: 463 ERHSMSEAALYALTKMQSE-VTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYE--- 518
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
D ++ + LID Y KCR S F +D
Sbjct: 519 ---------------------------IDDILRSVLIDMYCKCRQFDYSIRIFEARPSRD 551
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
++ WN+M+ G A G E +L DEM+ + ++ ++++ G L +C V+LG++
Sbjct: 552 VILWNSMIFGCAYSGKGEYGLDLFDEMQ--KQGIKADSVTFLGALVSCISEGHVRLGRS 608
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 79/385 (20%), Positives = 139/385 (36%), Gaps = 80/385 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
++ G+Q+HA++I G E+ L S L++++C W SM+
Sbjct: 502 LKQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFG 561
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY----DYMISIK 95
G E ++LF M +G++ D +C R+G+ + D I +
Sbjct: 562 CAYSGKGEYGLDLFDEMQKQGIKADSVTFLGALVSCISEGHVRLGRSYFTLMMDESIIPR 621
Query: 96 FEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSL-IDFYAKCRYLKVSHCKFS 154
E C +++L K G M E M F ++ + + CR + + K
Sbjct: 622 IEHYEC----MIELLGKHGCMVELEDFVEHMP--FEPTTAMWLRIFDCCR--EYGNRKLG 673
Query: 155 KIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGV 214
+ K + N + + E + E E + S S C ++
Sbjct: 674 ERAAKCINDSNPLTPVQFVATVDYESNDGGREAE---------STSFSSEGEGCEELPFS 724
Query: 215 KLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVW----NSIISAFVRSGQVV 270
G+A S S+ L+TR + +W FV +
Sbjct: 725 LEGEA---------------------SGSLPAPLTTRPLAIWYGMARHHHHHFVSHLRAS 763
Query: 271 DAL-DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQ 329
L DLLR PN + LK + + +F+ N L+ Y R G +
Sbjct: 764 APLADLLRSA------PNLPAARAAHARALKSPFVAE-----TFLLNTLVSAYARLGRLP 812
Query: 330 KSRKIFVLMPHKNLVSWNVMISVYG 354
+R++F +PH N S+N ++S +
Sbjct: 813 DARRVFDEIPHPNTFSYNALLSAHA 837
>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 725
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/346 (24%), Positives = 162/346 (46%), Gaps = 27/346 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M+ Y G +E LF M D V PD + + AC + R + +YD++
Sbjct: 182 TWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFL 241
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSH 150
I + + L+ ++ G M++ F +M ++ V+ +++ Y+K L +
Sbjct: 242 IENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDAR 301
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + + KDLV W M++ YA +E + +EM + ++P+ +++ V++AC
Sbjct: 302 VIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEM--CCSGIKPDVVTMLSVISACVN 359
Query: 211 VKGVKLGKAIHGY-----------VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ + K +H Y + I++ CG + + VF ++ TR+VV W+S+
Sbjct: 360 LGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSM 419
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----- 314
I+AF G+ D+L L + NV+PN VT V VL C + +G + +
Sbjct: 420 INAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYN 479
Query: 315 -------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ ++D++GR ++++ ++ MP N+V W ++S
Sbjct: 480 ITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSA 525
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 140/299 (46%), Gaps = 66/299 (22%)
Query: 120 SGLFEEMD-----------QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAML 168
S LFE M+ D V L+D YA C + + F ++ Q+D+V+WN M+
Sbjct: 128 SALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMI 187
Query: 169 AGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL--- 225
Y G +E L +EM+ +++ P+ + L +++AC + ++ +AI+ +++
Sbjct: 188 ERYCRFGLLDEAFKLFEEMK--DSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIEND 245
Query: 226 -RHHIHLSTA--------------------------------------CGFVICSCSVFN 246
R HL TA G + + +F+
Sbjct: 246 VRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFD 305
Query: 247 QLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ 306
Q +D+V W ++ISA+ S +AL + ++ + +KP+ VT++SV+ AC+ L L +
Sbjct: 306 QTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDK 365
Query: 307 -----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
GL + + NALI+MY +CG + +R +F MP +N+VSW+ MI+ +
Sbjct: 366 AKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFA 424
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 87/211 (41%), Gaps = 53/211 (25%)
Query: 197 NTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVF 245
+ IS +L A ++V + G +HG+ + + + ACG + + +VF
Sbjct: 113 DRISFPPILKAVSKVSALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVF 172
Query: 246 NQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK----- 300
+++S RDVV WN++I + R G + +A L ++ +NV P+ + + +++ AC +
Sbjct: 173 DEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMR 232
Query: 301 -----------------------LAALPQGLG--------------TGSFVWNALIDMYG 323
L + G G FV A++ Y
Sbjct: 233 YNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYS 292
Query: 324 RCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ G + +R IF K+LV W MIS Y
Sbjct: 293 KAGRLDDARVIFDQTEMKDLVCWTTMISAYA 323
>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/332 (24%), Positives = 162/332 (48%), Gaps = 26/332 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ Y E + ++ MI + V+PD V AC++L+ ++G++++ Y+
Sbjct: 222 SWNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYI 281
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSH 150
+ L+D+++KCG +E LF+ M + +V+ ++I YAK L ++
Sbjct: 282 EESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAG 341
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + +K++V+WNAM+ E L EM+ ++M+P+ +++ L+AC+Q
Sbjct: 342 KLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQW--SNMKPDKVTMLHCLSACSQ 399
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ + G H Y+ +H++ L A CG + + VFN++ R+ + W +I
Sbjct: 400 LGALDTGMWTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAI 459
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------ 307
I G V DA+ +I + + P+ +T + VL AC + +G
Sbjct: 460 IGGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFN 519
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
L ++ ++++ GR G ++++ ++ MP
Sbjct: 520 LSPQPKHYSCMVNLLGRAGLLEEAEELIKTMP 551
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 103/417 (24%), Positives = 189/417 (45%), Gaps = 88/417 (21%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH 65
Q+ A +I+ G+ L F S+L+ FC + L Y +I+N P+
Sbjct: 71 QIQAQMILTGLILDGFASSRLIS-FCAISESRN----LDYCIKILNNLQ-------NPNV 118
Query: 66 FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP----LLDLFIKCGRMEITSG 121
F V + C E ++ + G +Y M++ C RP LF C + ++
Sbjct: 119 FSWNAVIRGCVESENPQKGLVLYKRMLTRA----GC--RPDNYTYSFLFKVCANLVLSYM 172
Query: 122 LFEEM--------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYAL 173
FE + D+D + N +I ++H F + +DLVSWN+++ GY
Sbjct: 173 GFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVR 232
Query: 174 GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST 233
E + +M I ++P+ +++ GV++ACAQ++ +KLG+ IH Y+ ++L
Sbjct: 233 RRQPREAMGIYQQM--ITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKI 290
Query: 234 AC------------------------------------------GFVICSCSVFNQLSTR 251
+ G + + +F+ + +
Sbjct: 291 SLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEK 350
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTG 311
+VV WN++I + V++ +AL+L R++ +N+KP+ VT++ L AC +L AL G+ T
Sbjct: 351 NVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTH 410
Query: 312 SFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI---SVYG 354
+++ ALIDMY +CG + K+ ++F MP +N ++W +I ++YG
Sbjct: 411 NYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLALYG 467
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 128/282 (45%), Gaps = 30/282 (10%)
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQ-----DFLVNNSLIDFYAKCRYLKVSHCK--FS 154
+ PLL L C + +M D ++ LI F A + +C +
Sbjct: 52 LSNPLLSLLENCKSFSQLKQIQAQMILTGLILDGFASSRLISFCAISESRNLDYCIKILN 111
Query: 155 KIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGV 214
++ ++ SWNA++ G ++ L M + + +P+ + S + CA +
Sbjct: 112 NLQNPNVFSWNAVIRGCVESENPQKGLVLYKRM-LTRAGCRPDNYTYSFLFKVCANLVLS 170
Query: 215 KLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAF 263
+G I G VL+ IH+ + G + VF++ RD+V WNS+I+ +
Sbjct: 171 YMGFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGY 230
Query: 264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW-------- 315
VR Q +A+ + + +I +VKP+ VT++ V+ AC +L +L G ++
Sbjct: 231 VRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKI 290
Query: 316 ---NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
NAL+DMY +CG ++ + +F M K +VSW MI Y
Sbjct: 291 SLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYA 332
>gi|413918573|gb|AFW58505.1| hypothetical protein ZEAMMB73_474993 [Zea mays]
Length = 773
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 159/347 (45%), Gaps = 54/347 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTS++G+Y G E + LF M++ G++PD + V + GK + +
Sbjct: 288 SWTSLIGIYCRRGLITEAMELFQQMMESGLQPDEILVSCVLSGLGNNGNVHGGKTFHAVI 347
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F L+ N+LI Y K + +
Sbjct: 348 TKRNF------------------------------GDSVLIGNALISMYGKFEMVDSAGR 377
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI-QTDMQPNTISLSGVLAACAQ 210
F + Q+D SWN M+ GY G + L EM++ + + SL +++C++
Sbjct: 378 VFRLLHQRDADSWNLMVVGYCKAGCDVKCLELYREMQLRDKYEFWCVADSLVSAISSCSR 437
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTR-DVVVWNS 258
+ ++LG++ H Y ++H + ++ CG +C +F + DVV WN+
Sbjct: 438 LAELRLGRSAHCYSIKHLLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGDVVTWNT 497
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV---- 314
+IS++ G A+ L +++ + PN+ T+++V+ AC L AL +G S+V
Sbjct: 498 LISSYAHLGHSNAAMSLYDQMLIEGLTPNSTTLITVISACANLVALERGEKIHSYVKEMG 557
Query: 315 WN-------ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
W+ ALIDMY +CG + +R+IF M ++V+WNVMIS YG
Sbjct: 558 WDYDVSINTALIDMYAKCGQLGIARRIFDSMLQHDVVAWNVMISGYG 604
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/363 (23%), Positives = 161/363 (44%), Gaps = 51/363 (14%)
Query: 15 GVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKA 74
G+ AF S + F W S++ ++ + ++ M+ G RP F P A
Sbjct: 62 GLAALAFSASPRPDAFL-WNSLIRTHHCASDFVAALSAHRRMLASGARPSPFTAPLAASA 120
Query: 75 CSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNN 134
+EL VG V+ Y CV+ LL + G V +
Sbjct: 121 SAELGALGVGAAVHAY----------CVRYGLL----------VGDG------DSVAVAS 154
Query: 135 SLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD- 193
SL+ YA+C ++ + F ++ ++D+V+W A+++G G E L EM + D
Sbjct: 155 SLVYMYARCGNVRDAVKVFEEMPERDVVAWTAVISGCVRNGESGEGLRYLVEMVRLAGDG 214
Query: 194 -MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICS 241
++PN+ ++ L AC + + G+ +HGYV++ I S + C +
Sbjct: 215 SVRPNSRTMESGLEACGVLDELNSGRCLHGYVVKVGIGDSPMVISALFSMYSKCYSTEDA 274
Query: 242 CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA---- 297
C++F +L +DVV W S+I + R G + +A++L + ++ + ++P+ + + VL
Sbjct: 275 CALFLELPEKDVVSWTSLIGIYCRRGLITEAMELFQQMMESGLQPDEILVSCVLSGLGNN 334
Query: 298 -------CLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ G + NALI MYG+ + + ++F L+ ++ SWN+M+
Sbjct: 335 GNVHGGKTFHAVITKRNFGDSVLIGNALISMYGKFEMVDSAGRVFRLLHQRDADSWNLMV 394
Query: 351 SVY 353
Y
Sbjct: 395 VGY 397
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 131/272 (48%), Gaps = 37/272 (13%)
Query: 101 CVKRPLLDLFIKCGRM-EITSGLFEE-------MDQDFLVNNSLIDFYAKCRYLKVSH-C 151
CV L+ C R+ E+ G +D+D V N LI Y +C K H C
Sbjct: 423 CVADSLVSAISSCSRLAELRLGRSAHCYSIKHLLDEDSSVANVLIGMYGRCG--KFDHAC 480
Query: 152 K-FSKIKQK-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
K F K K D+V+WN +++ YA G +L D+M + + PN+ +L V++ACA
Sbjct: 481 KIFGLAKLKGDVVTWNTLISSYAHLGHSNAAMSLYDQM--LIEGLTPNSTTLITVISACA 538
Query: 210 QVKGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNS 258
+ ++ G+ IH YV + + ++TA CG + + +F+ + DVV WN
Sbjct: 539 NLVALERGEKIHSYVKEMGWDYDVSINTALIDMYAKCGQLGIARRIFDSMLQHDVVAWNV 598
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTGS 312
+IS + G+ AL+L + ++KPN VT +++L A L +G +G S
Sbjct: 599 MISGYGMHGEAKQALELFGKMEGGSIKPNGVTFLAILSALCHSGLLEEGRKVFTRMGKYS 658
Query: 313 FVWN-----ALIDMYGRCGAIQKSRKIFVLMP 339
N ++D+ G+ G +Q++ + + MP
Sbjct: 659 LEPNLKHYACMVDLLGKSGHLQEAEDMVLAMP 690
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 32/176 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +++ Y LG+ ++L+ M+ +G+ P+ V AC+ L G+ ++ Y+
Sbjct: 494 TWNTLISSYAHLGHSNAAMSLYDQMLIEGLTPNSTTLITVISACANLVALERGEKIHSYV 553
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + D D +N +LID YAKC L ++
Sbjct: 554 KEMGW------------------------------DYDVSINTALIDMYAKCGQLGIARR 583
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
F + Q D+V+WN M++GY + G ++ L +ME ++PN ++ +L+A
Sbjct: 584 IFDSMLQHDVVAWNVMISGYGMHGEAKQALELFGKME--GGSIKPNGVTFLAILSA 637
>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 616
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 157/311 (50%), Gaps = 16/311 (5%)
Query: 12 IVCGVELCA--FLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCP 69
+VCG+ CA + +W SM+G Y +G ++E LF M + G+ PD F
Sbjct: 134 VVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFV 193
Query: 70 KVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQD 129
+ CS+ +D +G+ V+ + + + V+ L+D++ KCG + +F+ +
Sbjct: 194 NLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEK 253
Query: 130 FLVN-NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
+V+ S+I YA+ ++V+ F ++ K++VSWN+M++ Y G E +L ++M
Sbjct: 254 NVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMR 313
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGF 237
+ + P+ +L +LAAC+Q+ + +GK IH Y+L + I + CG
Sbjct: 314 --NSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGP 371
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
V+ + +F ++ +++V WN II A G ++A+ L ++ P+ +T+ +L A
Sbjct: 372 VVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSA 431
Query: 298 CLKLAALPQGL 308
C + GL
Sbjct: 432 CSHSGLVDMGL 442
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 110/372 (29%), Positives = 166/372 (44%), Gaps = 92/372 (24%)
Query: 39 MYNVL--GYYE-----EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
MYN L GY + V LF MI G+ P+ F P V KAC Y V+
Sbjct: 55 MYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHG-- 112
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
L IK G I S +F V N+LI Y C + +
Sbjct: 113 -----------------LAIKLG---IGSLVF--------VQNALIAVYVVCGLIHCARK 144
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F I K LVSWN+M+ GYA G +E L +M + M+P+ + +L+ C+Q
Sbjct: 145 LFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMR--EWGMEPDGFTFVNLLSVCSQS 202
Query: 212 KGVKLGKAIH----------GYVLRH----------HIHLSTAC---------------- 235
+ + LG+ +H ++R+ ++H + A
Sbjct: 203 RDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMI 262
Query: 236 ------GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289
G + + +F+Q+ ++VV WNS+IS ++R GQ +ALDL + + V P+
Sbjct: 263 SAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEA 322
Query: 290 TIVSVLPACLKLAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLM 338
T+VS+L AC +L L G +++ +N+LIDMY +CG + + IF+ M
Sbjct: 323 TLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEM 382
Query: 339 PHKNLVSWNVMI 350
P KNLVSWNV+I
Sbjct: 383 PGKNLVSWNVII 394
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 107/231 (46%), Gaps = 24/231 (10%)
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
L+ + F +I Q + +N+++ GY+ + + +L MI + + PN +L VL
Sbjct: 38 LQYAQRMFDQIPQPNKFMYNSLIRGYS--NSDDPIDAVLLFRRMICSGLSPNEFTLPFVL 95
Query: 206 AACA---------QVKG--VKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVV 254
AC V G +KLG +V I + CG + C+ +F+ ++ + +V
Sbjct: 96 KACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLV 155
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP--------- 305
WNS+I + G +A L R + ++P+ T V++L C + L
Sbjct: 156 SWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCI 215
Query: 306 --QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G+ V NAL+DMY +CG + ++ IF KN+VSW MIS Y
Sbjct: 216 EITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYA 266
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 27/168 (16%)
Query: 211 VKGVKLGKAIHGYVLRHHIHLST-ACGFVICSCSV------------FNQLSTRDVVVWN 257
++G+KL +H ++ H + T G +I C+V F+Q+ + ++N
Sbjct: 1 MRGLKL---LHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYN 57
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQ 306
S+I + S +DA+ L R +I + + PN T+ VL AC + A+
Sbjct: 58 SLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKL 117
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G+G+ FV NALI +Y CG I +RK+F + K LVSWN MI Y
Sbjct: 118 GIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYA 165
>gi|413922815|gb|AFW62747.1| hypothetical protein ZEAMMB73_141955 [Zea mays]
Length = 301
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 146/280 (52%), Gaps = 18/280 (6%)
Query: 56 MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR 115
M + GV PD + V AC ++ R+GK ++ YM+ A + L+ L+ C
Sbjct: 1 MKNSGVVPDQLILATVLPACGHIRHLRIGKAIHSYMLVSDMIIGAHISSALISLYASCAN 60
Query: 116 MEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALG 174
ME+ L+ EM +D + + +++ YA+ R ++++ F + +KD+VSW+AM++GY
Sbjct: 61 MEMAEKLYNEMPRKDLVSSTAMVSRYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDS 120
Query: 175 GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIH 230
E +L + M+ + ++ + +++ V++ACA + + K IH ++ L +H
Sbjct: 121 NQPNEALSLFNGMQ--ECGIRSDEVTMLSVISACANLGSLNKAKWIHAFIKNNGLNKVLH 178
Query: 231 LSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283
+ A CG + + +VFN++ ++V+ W S+ISAF G +L L +
Sbjct: 179 ICNALIDMFAKCGGINLALNVFNEMPLKNVITWTSMISAFAMHGDGKSSLRLFEQMKDEG 238
Query: 284 VKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYG 323
+PN VT +S+L AC + + + G ++++++ YG
Sbjct: 239 AEPNEVTFLSLLYACCHVGLVYE----GRLLFSSMVQQYG 274
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 103/219 (47%), Gaps = 53/219 (24%)
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI----HLSTACGFVICSC-- 242
M + + P+ + L+ VL AC ++ +++GKAIH Y+L + H+S+A + SC
Sbjct: 1 MKNSGVVPDQLILATVLPACGHIRHLRIGKAIHSYMLVSDMIIGAHISSALISLYASCAN 60
Query: 243 ------------------------------------SVFNQLSTRDVVVWNSIISAFVRS 266
S+F+ + +DVV W+++IS +V S
Sbjct: 61 MEMAEKLYNEMPRKDLVSSTAMVSRYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDS 120
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVW 315
Q +AL L + ++ + VT++SV+ AC L +L + GL +
Sbjct: 121 NQPNEALSLFNGMQECGIRSDEVTMLSVISACANLGSLNKAKWIHAFIKNNGLNKVLHIC 180
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
NALIDM+ +CG I + +F MP KN+++W MIS +
Sbjct: 181 NALIDMFAKCGGINLALNVFNEMPLKNVITWTSMISAFA 219
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/197 (19%), Positives = 82/197 (41%), Gaps = 32/197 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W++M+ Y E ++LF M + G+R D V AC+ L K ++ ++
Sbjct: 109 SWSAMISGYVDSNQPNEALSLFNGMQECGIRSDEVTMLSVISACANLGSLNKAKWIHAFI 168
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + L+D+F KCG + + +F EM
Sbjct: 169 KNNGLNKVLHICNALIDMFAKCGGINLALNVFNEM------------------------- 203
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
K++++W +M++ +A+ G + L ++M+ +PN ++ +L AC V
Sbjct: 204 -----PLKNVITWTSMISAFAMHGDGKSSLRLFEQMK--DEGAEPNEVTFLSLLYACCHV 256
Query: 212 KGVKLGKAIHGYVLRHH 228
V G+ + +++ +
Sbjct: 257 GLVYEGRLLFSSMVQQY 273
>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
Length = 803
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/388 (23%), Positives = 173/388 (44%), Gaps = 68/388 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSE--------LKDYRV 83
++T+MMG G ++ + LF M GV D V AC++ + +R+
Sbjct: 209 SFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATDYSVARAFRL 268
Query: 84 GKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYA- 141
G+ ++ ++ F + V L+D++ KC M+ +FE + +V+ N LI +
Sbjct: 269 GQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQ 328
Query: 142 ----------------------------------KCRYLKVSHCKFSKIKQKDLVSWNAM 167
K R + + F KI + + +WN +
Sbjct: 329 EGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTL 388
Query: 168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH 227
L+GY ++ L M+ ++QP+ +L+ +L++C+++ + G+ +H +R
Sbjct: 389 LSGYCQEEQHQDTIELFRRMQ--HQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRF 446
Query: 228 HIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL 276
+H + + CG + + S+FN+++ RDVV WNSIIS +A D
Sbjct: 447 LLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFF 506
Query: 277 RDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNALIDMYGRC 325
+ + + P + S++ +C +L+++P G + +V +ALIDMY +C
Sbjct: 507 KQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKC 566
Query: 326 GAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G + +R F M KN+V+WN MI Y
Sbjct: 567 GNMDDARLFFDTMMMKNIVAWNEMIHGY 594
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/345 (19%), Positives = 153/345 (44%), Gaps = 56/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +++ Y +++ + LF M + V+PD + +CS+L G+ V+
Sbjct: 384 TWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHS-- 441
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
S++F + D V + L+D Y+KC + ++
Sbjct: 442 ASVRFL----------------------------LHNDMFVASGLVDMYSKCGQIGIARS 473
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+K+ ++D+V WN++++G + +E + +M + + P S + ++ +C+++
Sbjct: 474 IFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMR--ENGIMPTESSYASMINSCSRL 531
Query: 212 KGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ G+ IH V++ ++++ +A CG + + F+ + +++V WN +I
Sbjct: 532 SSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMI 591
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA--- 317
+ ++G A++L ++ KP+ VT ++VL C + + + + + N+
Sbjct: 592 HGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGI 651
Query: 318 ---------LIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
LID GR G + + MP K + + W V+++
Sbjct: 652 IPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAA 696
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 140/331 (42%), Gaps = 58/331 (17%)
Query: 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL 107
E V ++ M +G+ P HF V AC L G+
Sbjct: 124 EAVEMYGRMRAEGLLPTHFTLASVLSACGGLAALGDGR---------------------- 161
Query: 108 DLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAM 167
+C + + GL D + V N+L+ Y KC + + F + + + VS+ AM
Sbjct: 162 ----RCHGVAVKVGL----DANQFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAM 213
Query: 168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV--------KGVKLGKA 219
+ G A G ++ L M ++ + + +S+S VL ACAQ + +LG+A
Sbjct: 214 MGGLAQTGSIDDALRLF--ARMCRSGVPVDPVSVSSVLGACAQACATDYSVARAFRLGQA 271
Query: 220 IHGYVLR------HH-----IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH V+R H I + T C + + VF L + +V WN +I+ F + G
Sbjct: 272 IHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGS 331
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLK------LAALPQGLGTGSF-VWNALIDM 321
A+++L + A +PN VT ++L +C+K A+ + S WN L+
Sbjct: 332 CAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSG 391
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
Y + Q + ++F M H+N+ ++V
Sbjct: 392 YCQEEQHQDTIELFRRMQHQNVQPDRTTLAV 422
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 117/260 (45%), Gaps = 38/260 (14%)
Query: 128 QDFLVNNSLIDFYAKCRY--LKVSHCKFSKIKQKDLVSWNAMLAGYALG-GFREEVTNLL 184
D+ N +L A CR L + + +++ VSWN +++ A G E +
Sbjct: 73 NDYSYNAAL---SAACRAGDLDAARDLLGGMPRRNAVSWNTVISALARSPGDGGEAVEMY 129
Query: 185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLST 233
M + P +L+ VL+AC + + G+ HG +V + + T
Sbjct: 130 GRMR--AEGLLPTHFTLASVLSACGGLAALGDGRRCHGVAVKVGLDANQFVENALLGMYT 187
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
CG V + +F ++ + V + +++ ++G + DAL L + + V + V++ S
Sbjct: 188 KCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVSVSS 247
Query: 294 VLPACLKLAA-------------------LPQGLGTGSFVWNALIDMYGRCGAIQKSRKI 334
VL AC + A + +G G+ V N+LIDMY +C + ++ K+
Sbjct: 248 VLGACAQACATDYSVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKV 307
Query: 335 FVLMPHKNLVSWNVMISVYG 354
F +P +VSWN++I+ +G
Sbjct: 308 FESLPSVTIVSWNILITGFG 327
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 33/183 (18%)
Query: 28 EVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDV 87
+V C W S++ + +E + F M + G+ P + +CS L G+ +
Sbjct: 482 DVVC-WNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQI 540
Query: 88 YDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147
+ ++ + DQ+ V ++LID YAKC +
Sbjct: 541 HAQVMKDGY------------------------------DQNVYVGSALIDMYAKCGNMD 570
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
+ F + K++V+WN M+ GYA G ++ L + M+ T+ +P+ ++ VL
Sbjct: 571 DARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFE--YMLTTEQKPDAVTFIAVLTG 628
Query: 208 CAQ 210
C+
Sbjct: 629 CSH 631
>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 620
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 101/372 (27%), Positives = 166/372 (44%), Gaps = 77/372 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMG--------------MYNVL------ 43
G Q+HA G+ L ++L+ ++ S++ ++NVL
Sbjct: 66 GKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAW 125
Query: 44 -GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G ++ + L++ M+D G+RPD+F P V KACS L G+ +++Y+I +E
Sbjct: 126 NGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWE----- 180
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+D V +LID YAKC + + F KI +D V
Sbjct: 181 -------------------------RDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAV 215
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
WN+MLA YA G +E +L EM ++P +L V+++ A V + G+ IHG
Sbjct: 216 LWNSMLAAYAQNGHPDESISLC--REMAANGVRPTEATLVTVISSSADVACLPYGREIHG 273
Query: 223 YVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+ RH I + CG V + ++F +L + VV WN+II+ + G V
Sbjct: 274 FGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVG 333
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNALI 319
ALDL D + +P+ +T V VL AC + L +G + + + +I
Sbjct: 334 ALDLF-DKMRKEDRPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMI 392
Query: 320 DMYGRCGAIQKS 331
D+ G CG + ++
Sbjct: 393 DLLGHCGQLDEA 404
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 125/241 (51%), Gaps = 24/241 (9%)
Query: 136 LIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ 195
L+ YA L + F KI +++L WN ++ GYA G + L +M + ++
Sbjct: 88 LVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKM--LDYGLR 145
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSV 244
P+ +L VL AC+ + + G++IH YV++ I + CG V+ + V
Sbjct: 146 PDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRV 205
Query: 245 FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL 304
F+++ RD V+WNS+++A+ ++G +++ L R++ V+P T+V+V+ + +A L
Sbjct: 206 FDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACL 265
Query: 305 PQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
P G F W ALIDMY +CG+++ + +F + K +VSWN +I+ Y
Sbjct: 266 PYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGY 325
Query: 354 G 354
Sbjct: 326 A 326
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 87/373 (23%), Positives = 164/373 (43%), Gaps = 90/373 (24%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G +H ++I G E F+G+ L++++ W SM+ Y
Sbjct: 167 GRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQ 226
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G+ +E ++L M GVRP V + +++ G++++ + F+ N V
Sbjct: 227 NGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKV 286
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
K +LID YAKC +KV+ F ++++K +V
Sbjct: 287 K------------------------------TALIDMYAKCGSVKVALALFERLREKRVV 316
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SWNA++ GYA+ G +L D+M + + +P+ I+ GVLAAC++ + + G+A++
Sbjct: 317 SWNAIITGYAMHGLAVGALDLFDKM---RKEDRPDHITFVGVLAACSRGRLLDEGRALYN 373
Query: 223 YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
++R + G T V + +I GQ+ +A DL+R++
Sbjct: 374 LMVRDY-------GI------------TPTVQHYTCMIDLLGHCGQLDEAYDLIRNM--- 411
Query: 283 NVKPNTVTIVSVLPAC-----LKLAALP-------QGLGTGSFVWNALIDMYGRCGAIQK 330
+VKP++ ++L +C ++LA L + +G++V L +MY + G +
Sbjct: 412 SVKPDSGVWGALLNSCKIHGNVELAELALEKLIELEPDDSGNYV--ILANMYAQSGKWEG 469
Query: 331 SRKIFVLMPHKNL 343
K+ +M K +
Sbjct: 470 VEKLRQVMIDKRI 482
>gi|147765322|emb|CAN64903.1| hypothetical protein VITISV_019802 [Vitis vinifera]
Length = 625
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 107/407 (26%), Positives = 179/407 (43%), Gaps = 85/407 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF--CN-------------------WTSMMGM 39
++L Q H+ ++ G+ +FL ++L+ + C W S++
Sbjct: 39 LKLTRQSHSRILSLGLSQNSFLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLING 98
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y E LF M V PD F + K SEL GK ++ I F
Sbjct: 99 CVKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRTGFV-- 156
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D +V NS++ Y KC S F ++ +
Sbjct: 157 ----------------------------SDTVVANSIMSMYCKCGNFDESRKVFDEMTIR 188
Query: 160 DLVSWNAMLAGYALGG---FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGV-K 215
+ SWN ++AGYA+ G FREE + +M+M +++P+ ++S +L C G
Sbjct: 189 NSGSWNVLIAGYAVSGNCNFREETWEFVKQMQM--DEVRPDAYTISSLLPLCDGDMGKWD 246
Query: 216 LGKAIHGYVLRHH--------IHLS-------TACGFVICSCSVFNQLSTRDVVVWNSII 260
G+ +H Y++++ +HL + V+ VF+++ R+V W ++I
Sbjct: 247 YGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMI 306
Query: 261 SAFVRSGQVVDALDLLRDV-IVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------ 313
+ +V +G +AL L RD+ ++ V+PN V++VSVLPAC + L G F
Sbjct: 307 NGYVENGDSDEALSLFRDMQVIDGVEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKEL 366
Query: 314 -----VWNALIDMYGRCGAIQKSRKIFVLMPH-KNLVSWNVMISVYG 354
+ NALIDMY +CG++ +R++F K+ +SW+ MIS YG
Sbjct: 367 NNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYG 413
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 157/349 (44%), Gaps = 56/349 (16%)
Query: 32 NWTSMMGMYNVLG---YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACS-ELKDYRVGKDV 87
+W ++ Y V G + EE M VRPD + + C ++ + G+++
Sbjct: 192 SWNVLIAGYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDMGKWDYGREL 251
Query: 88 YDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147
+ Y++ + E+ GL D D + LID Y++ +
Sbjct: 252 HCYIV----------------------KNELVLGL----DSDVHLGCCLIDMYSRSNKVV 285
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
V F ++K +++ SW AM+ GY G +E +L +M++I ++PN +SL VL A
Sbjct: 286 VGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDG-VEPNRVSLVSVLPA 344
Query: 208 CAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLST-RDVVV 255
C+ G+ G+ IHG+ +R I + + CG + + VF S +D +
Sbjct: 345 CSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAIS 404
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW 315
W+S+IS + G+ +A+ L ++ A ++P+ +T V +L AC + + +GL S V
Sbjct: 405 WSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACGRSGLVNEGLNIYSSVI 464
Query: 316 N------------ALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMIS 351
N ++DM GR G + ++ +P + S W ++S
Sbjct: 465 NDYGIEPTLEICACIVDMLGRAGQLDRALDFIKAIPVEPGPSVWGALVS 513
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 22/165 (13%)
Query: 212 KGVKLGKAIHGYVLR----HHIHLSTACGFVICSCS-------VFNQLSTRDVVVWNSII 260
K +KL + H +L + L+T F C VF+ L ++V +WNS+I
Sbjct: 37 KSLKLTRQSHSRILSLGLSQNSFLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLI 96
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTG-- 311
+ V++ +A L + ++V P+ T+ ++ +L AL G + TG
Sbjct: 97 NGCVKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRTGFV 156
Query: 312 --SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ V N+++ MY +CG +SRK+F M +N SWNV+I+ Y
Sbjct: 157 SDTVVANSIMSMYCKCGNFDESRKVFDEMTIRNSGSWNVLIAGYA 201
>gi|224123726|ref|XP_002330193.1| predicted protein [Populus trichocarpa]
gi|222871649|gb|EEF08780.1| predicted protein [Populus trichocarpa]
Length = 485
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 171/347 (49%), Gaps = 29/347 (8%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
+ +M+ Y++ G +EE LF M ++G+ PD + + KACS L ++GK ++ ++
Sbjct: 75 FNAMIKGYSLNGPFEESFRLFSSMKNRGIWPDEYTLAPLLKACSSLGVLQLGKCMHKEVL 134
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSHC 151
+ FEG + ++ +++L+ CG ME +F+EM Q D +V N +I + K + + C
Sbjct: 135 VVGFEGFSAIRIGVIELYSSCGVMEDAEKVFDEMYQRDVIVWNLMIHGFCKRGDVDMGLC 194
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +++++ +VSWN M++ A E L +M+ +P+ ++ VL CA++
Sbjct: 195 LFRQMRKRSVVSWNIMISCLAQSRRDSEALGLFH--DMLDWGFKPDEATVVTVLPICARL 252
Query: 212 KGVKLGKAIHGY-----VLRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
V +GK IH Y + R + + A G + VF+++ ++V+ WN++
Sbjct: 253 GSVDVGKWIHSYAKSSGLYRDFVAVGNALVDFYNKSGMFETARRVFDEMPRKNVISWNTL 312
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-TGSFV---- 314
IS +G ++LL +++ V+PN T V VL C +G S V
Sbjct: 313 ISGLALNGNGELGVELLEEMMNEGVRPNDATFVGVLSCCAHAGLFERGRELLASMVEHHQ 372
Query: 315 -------WNALIDMYGRCGAIQKSRKIFVLMP--HKNLVSWNVMISV 352
+ ++D+ GR G ++++ + +MP N W ++S
Sbjct: 373 IEPKLEHYGCMVDLLGRSGCVREAYDLIRIMPGGAPNAALWGSLLSA 419
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 119/253 (47%), Gaps = 56/253 (22%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + + ++ +NAM+ GY+L G EE L M+ + P+ +L+ +L AC+ +
Sbjct: 64 FKQTQNPTIILFNAMIKGYSLNGPFEESFRLFSSMK--NRGIWPDEYTLAPLLKACSSLG 121
Query: 213 GVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++LGK +H VL I L ++CG + + VF+++ RDV+VWN +I
Sbjct: 122 VLQLGKCMHKEVLVVGFEGFSAIRIGVIELYSSCGVMEDAEKVFDEMYQRDVIVWNLMIH 181
Query: 262 AFVRSGQV-------------------------------VDALDLLRDVIVANVKPNTVT 290
F + G V +AL L D++ KP+ T
Sbjct: 182 GFCKRGDVDMGLCLFRQMRKRSVVSWNIMISCLAQSRRDSEALGLFHDMLDWGFKPDEAT 241
Query: 291 IVSVLPACLKLAALPQGLGTGSF------------VWNALIDMYGRCGAIQKSRKIFVLM 338
+V+VLP C +L ++ G S+ V NAL+D Y + G + +R++F M
Sbjct: 242 VVTVLPICARLGSVDVGKWIHSYAKSSGLYRDFVAVGNALVDFYNKSGMFETARRVFDEM 301
Query: 339 PHKNLVSWNVMIS 351
P KN++SWN +IS
Sbjct: 302 PRKNVISWNTLIS 314
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 71/155 (45%), Gaps = 22/155 (14%)
Query: 218 KAIHGYVLRHHI--------HLSTACGFV---ICSCSVFNQLSTRDVVVWNSIISAFVRS 266
+ IH + LRH + H + CG + + +F Q ++++N++I + +
Sbjct: 26 REIHAHFLRHGLNQLNQILSHFVSICGSLNKMAYANRIFKQTQNPTIILFNAMIKGYSLN 85
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LGTGSF--VW 315
G ++ L + + P+ T+ +L AC L L G +G F +
Sbjct: 86 GPFEESFRLFSSMKNRGIWPDEYTLAPLLKACSSLGVLQLGKCMHKEVLVVGFEGFSAIR 145
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+I++Y CG ++ + K+F M ++++ WN+MI
Sbjct: 146 IGVIELYSSCGVMEDAEKVFDEMYQRDVIVWNLMI 180
>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 642
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 183/365 (50%), Gaps = 42/365 (11%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKG 60
++LG QVHAH+++ G++ A +GS+ M+ Y G + V++F G
Sbjct: 86 LKLGHQVHAHMLLRGLQPTALVGSK----------MVAFYASSGDIDSSVSVF-----NG 130
Query: 61 VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITS 120
+ D+F P V K+ EL +GK V+ ++ I + + V L+ L+ KCG +
Sbjct: 131 IG-DYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAG 189
Query: 121 GLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREE 179
+F+ M +D N+L+ Y K + + F ++ +++VSW M++GY+ G ++
Sbjct: 190 KVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQ 249
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA----- 234
+L DEM + ++PN +++ VL ACAQ+ ++ G+ IH R ++ + +
Sbjct: 250 ALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIAL 309
Query: 235 ------CGFVICSCSVFNQL--STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286
CG ++ + + F++L + ++++ WN++I+A+ G + A+ R++I A ++P
Sbjct: 310 TAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQP 369
Query: 287 NTVTIVSVLPACLKLAALPQGLG-----TGSFVWNALIDMY-------GRCGAIQKSRKI 334
+ +T +L C + GL + ++ N ++ Y GR G + ++ K+
Sbjct: 370 DDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKL 429
Query: 335 FVLMP 339
MP
Sbjct: 430 VGEMP 434
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 77/137 (56%), Gaps = 15/137 (10%)
Query: 233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV--ANVKPNTVT 290
T G + + ++F ++ R++V W ++IS + +SG AL L +++ + V+PN VT
Sbjct: 211 TKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVT 270
Query: 291 IVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
I+SVLPAC +L+ L +G L + + V AL MY +CG++ +R F +
Sbjct: 271 IMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLN 330
Query: 340 --HKNLVSWNVMISVYG 354
KNL++WN MI+ Y
Sbjct: 331 RNEKNLIAWNTMITAYA 347
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 48/150 (32%)
Query: 204 VLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAF 263
VL + ++ V +GK +HG +LR + D+ V S+I +
Sbjct: 140 VLKSSVELLSVWMGKCVHGLILRIGLQF--------------------DLYVATSLIILY 179
Query: 264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYG 323
+ G++ DA + ++ + +V WNAL+ Y
Sbjct: 180 GKCGEINDAGKVFDNMTIRDVS----------------------------SWNALLAGYT 211
Query: 324 RCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ G I + IF MP +N+VSW MIS Y
Sbjct: 212 KSGCIDAALAIFERMPWRNIVSWTTMISGY 241
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 35/177 (19%), Positives = 76/177 (42%), Gaps = 25/177 (14%)
Query: 182 NLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICS 241
L + ++ + P +S + V + +KLG +H ++L + + G
Sbjct: 54 TLQNLLQPLSAPGPPPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVG----- 108
Query: 242 CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV----IVANVKPNTVTIVSV-LP 296
+ +++ + SG + ++ + + V ++V ++SV +
Sbjct: 109 ---------------SKMVAFYASSGDIDSSVSVFNGIGDYFTFPFVLKSSVELLSVWMG 153
Query: 297 ACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
C+ L GL +V +LI +YG+CG I + K+F M +++ SWN +++ Y
Sbjct: 154 KCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGY 210
>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Brachypodium distachyon]
Length = 868
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 91/344 (26%), Positives = 169/344 (49%), Gaps = 54/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W M+G Y G+ EE ++L++ M+ G RPD + P V ++C + D +G++V+ ++
Sbjct: 162 SWNVMVGGYGKAGFLEEALDLYHRMLWAGARPDVYTFPCVLRSCGGVPDLTMGREVHAHV 221
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ GL E+D V N+L+ YAKC ++ +
Sbjct: 222 LRF--------------------------GLGVEVD----VLNALVTMYAKCGDVEAARK 251
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + D +SWNAM+AG+ E L + M++ +++PN ++++ V A +
Sbjct: 252 VFDGMSLTDCISWNAMIAGHFENHECEAGLELF--LHMLEDEVEPNLMTITSVTVASGLL 309
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ K IH ++ I + ++ G + +C+VF+++ TRD + W ++I
Sbjct: 310 SDLDFAKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMI 369
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV---------LPACLKLAALPQGLGTG 311
S + ++G AL++ + V NV P+ VT+ S L +KL L G
Sbjct: 370 SGYEKNGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGFI 429
Query: 312 SF--VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ V NAL++MY + I+K+ ++F MP K+++SW+ MI+ +
Sbjct: 430 RYIVVANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGF 473
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 107/223 (47%), Gaps = 24/223 (10%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+K+ ++D+ SWN M+ GY GF EE +L M+ +P+ + VL +C V
Sbjct: 152 FAKMPERDVFSWNVMVGGYGKAGFLEEALDLYH--RMLWAGARPDVYTFPCVLRSCGGVP 209
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ +G+ +H +VLR + + CG V + VF+ +S D + WN++I+
Sbjct: 210 DLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAARKVFDGMSLTDCISWNAMIA 269
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGT 310
+ + L+L ++ V+PN +TI SV A L+ A+ +G T
Sbjct: 270 GHFENHECEAGLELFLHMLEDEVEPNLMTITSVTVASGLLSDLDFAKEIHALAVKRGFAT 329
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
N+LI MY G + ++ +F M ++ +SW MIS Y
Sbjct: 330 DVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGY 372
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 136/314 (43%), Gaps = 45/314 (14%)
Query: 5 IQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPD 64
IQ+++ L G E C +WT+M+ Y G+ ++ + ++ LM V PD
Sbjct: 338 IQMYSSLGRMG-EACTVFSRMETRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPD 396
Query: 65 HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFE 124
+++ AC LD+ IK + + G
Sbjct: 397 D--------------------------VTVASALAACASLGRLDVGIKLHELATSKGFIR 430
Query: 125 EMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLL 184
+ +V N+L++ YAK + ++ + F + KD++SW++M+AG+ F + L
Sbjct: 431 YI----VVANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFC---FNHKNFEAL 483
Query: 185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI-----------HLST 233
+ D++PN+++ LAACA ++ GK IH +VLR I L
Sbjct: 484 YYFRHMLADVKPNSVTFIAALAACAATGSLRCGKEIHAHVLRQGIASEGYVPNALLDLYV 543
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
CG + + F T+DVV WN +++ FV G AL +++ P+ VT V+
Sbjct: 544 KCGQTGYAWAQFGAHGTKDVVSWNIMLAGFVAHGHGDIALSFFNEMLETGEHPDEVTFVA 603
Query: 294 VLPACLKLAALPQG 307
+L C + + QG
Sbjct: 604 LLCGCSRAGMVSQG 617
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 19/150 (12%)
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
G++LG A+ ++R G + VF ++ RDV WN ++ + ++G + +A
Sbjct: 128 GLRLGNAMLSMLVRF--------GETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEA 179
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALIDM 321
LDL ++ A +P+ T VL +C + L GLG V NAL+ M
Sbjct: 180 LDLYHRMLWAGARPDVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTM 239
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
Y +CG ++ +RK+F M + +SWN MI+
Sbjct: 240 YAKCGDVEAARKVFDGMSLTDCISWNAMIA 269
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 14/99 (14%)
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL--------GTGSF---VW 315
G++ AL LL + P+ V++ C A GL G+F +
Sbjct: 76 GELQQALWLLES---SPEPPDEDAYVALFHLCEWRRAAEHGLRACGHADAAHGTFGLRLG 132
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
NA++ M R G + K+F MP +++ SWNVM+ YG
Sbjct: 133 NAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYG 171
>gi|297824009|ref|XP_002879887.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
lyrata]
gi|297325726|gb|EFH56146.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
lyrata]
Length = 1359
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 97/397 (24%), Positives = 175/397 (44%), Gaps = 77/397 (19%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMY- 40
G Q+H ++ G++ ++ + LL ++ W +M+ Y
Sbjct: 789 FGRQIHCDVVKMGLDNDPYVSTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYV 848
Query: 41 -NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
N GY + LF M K V PD F V CS Y GK V+ + +
Sbjct: 849 ENDNGY--SALELFGFMRQKSVLPDSFTLSNVISCCSMFGLYDYGKSVHAELFKRPIQST 906
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
++ LL L+ KCG D D ++ F +++K
Sbjct: 907 PAIESALLTLYSKCG-----------CDTD-------------------AYLVFKSMEEK 936
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+V+W ++++G G +E + +M+ ++P++ ++ V+ ACA ++ + G
Sbjct: 937 DMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVINACAGLEALSFGLQ 996
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+HG +++ I L + CG + VF + ++V WNS+IS + R+
Sbjct: 997 VHGSMIKTGQVLNVFVGSSLIDLYSKCGLPEMALKVFTSMRPENIVAWNSMISCYSRNNL 1056
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNA 317
+++L ++ + P++V+I SVL A A+L + G+ + + + NA
Sbjct: 1057 PELSIELFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPSDTHLKNA 1116
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
LIDMY +CG + + IF M HK+L++WN+MI YG
Sbjct: 1117 LIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYG 1153
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/356 (23%), Positives = 158/356 (44%), Gaps = 65/356 (18%)
Query: 14 CGVELCAFLGSQLLEV--FCNWTSMMGMYNVLGYYEEIVNLFYLMIDK--GVRPDHFVCP 69
CG + A+L + +E W S++ G ++E + +F M D ++PD +
Sbjct: 920 CGCDTDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMT 979
Query: 70 KVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQD 129
V AC+ L+ G V+ MI K G++ +
Sbjct: 980 SVINACAGLEALSFGLQVHGSMI-------------------KTGQV-----------LN 1009
Query: 130 FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFRE---EVTNLLDE 186
V +SLID Y+KC +++ F+ ++ +++V+WN+M++ Y+ E E+ NL
Sbjct: 1010 VFVGSSLIDLYSKCGLPEMALKVFTSMRPENIVAWNSMISCYSRNNLPELSIELFNL--- 1066
Query: 187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI----HLSTA-------C 235
M+ + P+++S++ VL A + + GK++HGY LR I HL A C
Sbjct: 1067 --MLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKC 1124
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
GF + ++F ++ + ++ WN +I + G AL L ++ A P+ VT +S++
Sbjct: 1125 GFSKYAENIFKKMQHKSLITWNLMIYGYGSHGDCRTALSLFDELKKAGETPDDVTFLSLI 1184
Query: 296 PAC------------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
AC ++ G+ + ++D+ GR G ++++ MP
Sbjct: 1185 SACNHSGFVEEGKNFFEIMKQDYGIEPKMEHYANMVDLLGRAGRLEEAYSFIKAMP 1240
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 88/400 (22%), Positives = 167/400 (41%), Gaps = 85/400 (21%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLL-------------EVFCNWT-------------SMM 37
G +H +IV G F+ + L+ +VF W+ SM+
Sbjct: 580 GKTIHGSIIVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSGVSARDVTVCNSMI 639
Query: 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRV--GKDVYDYMISIK 95
Y ++E V F M+ GVRPD F V + ++R GK ++ YM+
Sbjct: 640 DGYFKFRRFKEGVGCFRRMLVLGVRPDAFSLSIVVSVLCKEGNFRREDGKQIHGYMLRNS 699
Query: 96 FEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSK 155
+G++ +K L+D++ K G +F E++
Sbjct: 700 LDGDSFLKTALIDMYFKFGLSTDAWRVFVEIED--------------------------- 732
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI--QTDMQPNTISLSGVLAACAQVKG 213
+ ++V WN M+ G+ GG E+ E+ M+ ++ + S +G L AC+Q +
Sbjct: 733 --KSNVVLWNVMIVGF--GG--SEICESSLELYMLAKSNSVKLVSTSFTGALGACSQSEN 786
Query: 214 VKLGKAIH-----------GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISA 262
G+ IH YV + + + CG V + +VF+ + + + +WN++++A
Sbjct: 787 SAFGRQIHCDVVKMGLDNDPYVSTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAA 846
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTG 311
+V + AL+L + +V P++ T+ +V+ C G + +
Sbjct: 847 YVENDNGYSALELFGFMRQKSVLPDSFTLSNVISCCSMFGLYDYGKSVHAELFKRPIQST 906
Query: 312 SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ +AL+ +Y +CG + +F M K++V+W +IS
Sbjct: 907 PAIESALLTLYSKCGCDTDAYLVFKSMEEKDMVAWGSLIS 946
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 134/319 (42%), Gaps = 64/319 (20%)
Query: 66 FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEE 125
F P + KACS L + GK ++ +I + + + + L+++++KCG ++ +F+
Sbjct: 562 FTFPSLLKACSSLTNLSSGKTIHGSIIVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDG 621
Query: 126 MDQ------DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREE 179
Q D V NS+ID Y K R K +G FR
Sbjct: 622 WSQSGVSARDVTVCNSMIDGYFKFRRFK-----------------------EGVGCFR-- 656
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKL--GKAIHGYVLRHHIH----LST 233
M+ ++P+ SLS V++ + + GK IHGY+LR+ + L T
Sbjct: 657 --------RMLVLGVRPDAFSLSIVVSVLCKEGNFRREDGKQIHGYMLRNSLDGDSFLKT 708
Query: 234 AC-------GFVICSCSVFNQLSTR-DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK 285
A G + VF ++ + +VV+WN +I F S +L+L +VK
Sbjct: 709 ALIDMYFKFGLSTDAWRVFVEIEDKSNVVLWNVMIVGFGGSEICESSLELYMLAKSNSVK 768
Query: 286 PNTVTIVSVLPAC-----------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKI 334
+ + L AC + + GL +V +L+ MY +CG + ++ +
Sbjct: 769 LVSTSFTGALGACSQSENSAFGRQIHCDVVKMGLDNDPYVSTSLLSMYSKCGMVGEAETV 828
Query: 335 FVLMPHKNLVSWNVMISVY 353
F + K L WN M++ Y
Sbjct: 829 FSCVVDKRLEIWNAMVAAY 847
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 97/239 (40%), Gaps = 53/239 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+ G+QVH +I G L F+GS L++++ W SM+
Sbjct: 991 LSFGLQVHGSMIKTGQVLNVFVGSSLIDLYSKCGLPEMALKVFTSMRPENIVAWNSMISC 1050
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y+ E + LF LM+ +G+ PD V A S GK ++ Y + + +
Sbjct: 1051 YSRNNLPELSIELFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPSD 1110
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+K L+D+++KCG + K + F K++ K
Sbjct: 1111 THLKNALIDMYVKCG------------------------------FSKYAENIFKKMQHK 1140
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
L++WN M+ GY G +L DE++ + P+ ++ +++AC V+ GK
Sbjct: 1141 SLITWNLMIYGYGSHGDCRTALSLFDELK--KAGETPDDVTFLSLISACNHSGFVEEGK 1197
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 87/185 (47%), Gaps = 30/185 (16%)
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYVL----RHHIHLSTA-------CGFVICSCSVFNQ- 247
+ +L AC+ + + GK IHG ++ R+ ++T+ CGF+ + VF+
Sbjct: 563 TFPSLLKACSSLTNLSSGKTIHGSIIVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGW 622
Query: 248 ----LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA- 302
+S RDV V NS+I + + + + + R ++V V+P+ ++ V+ K
Sbjct: 623 SQSGVSARDVTVCNSMIDGYFKFRRFKEGVGCFRRMLVLGVRPDAFSLSIVVSVLCKEGN 682
Query: 303 ------------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVM 349
L L SF+ ALIDMY + G + ++FV + K N+V WNVM
Sbjct: 683 FRREDGKQIHGYMLRNSLDGDSFLKTALIDMYFKFGLSTDAWRVFVEIEDKSNVVLWNVM 742
Query: 350 ISVYG 354
I +G
Sbjct: 743 IVGFG 747
>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
Length = 987
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 91/376 (24%), Positives = 171/376 (45%), Gaps = 58/376 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT M+ N G + + V F M+ +G P F V +C+ ++ VG+ V+ ++
Sbjct: 314 SWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFV 373
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSH 150
+ + V +L ++ KCG E +FE M + + N ++ Y ++++
Sbjct: 374 VKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAV 433
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + ++ +VSWN ++AGY G M + + M+P+ +++ VL+ACA
Sbjct: 434 SMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRM-LSASSMEPDAFTVTSVLSACAN 492
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVICSC---------------------------- 242
++ +K+GK +H Y+LR + S+ + S
Sbjct: 493 LRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFT 552
Query: 243 ----------------SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286
+F+ ++ RDV+ W ++I + ++GQ +A++L R +I+ +P
Sbjct: 553 ALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEP 612
Query: 287 NTVTIVSVLPACLKLAALPQG----------LGTGSF-VWNALIDMYGRCGAIQKSRKIF 335
N+ T+ +VL AC LA L G L S V NA+I +Y R G++ +R++F
Sbjct: 613 NSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVF 672
Query: 336 -VLMPHKNLVSWNVMI 350
+ K ++W MI
Sbjct: 673 DQICWRKETITWTSMI 688
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 161/353 (45%), Gaps = 37/353 (10%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W +++ YN G + F M+ + PD F V AC+ L+ ++GK ++ Y
Sbjct: 446 SWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSY 505
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCR-YLKVS 149
++ ++ + L+ + K G +E + MDQ + + ++I F A Y+K+
Sbjct: 506 ILRTGMPCSSQIMNALISTYAKSGSVETARRI---MDQAVVADLNVISFTALLEGYVKLG 562
Query: 150 HCK-----FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGV 204
K F + +D+++W AM+ GY G +E L M +I +PN+ +L+ V
Sbjct: 563 DTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGP--EPNSHTLAAV 620
Query: 205 LAACAQVKGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTR-D 252
L+ACA + + GK IH +R + +S A G V + VF+Q+ R +
Sbjct: 621 LSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKE 680
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS 312
+ W S+I A + G A+ L +++ VKP+ +T V VL AC + +G
Sbjct: 681 TITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYE 740
Query: 313 FVWNA------------LIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ N ++D++ R G + ++ + MP + V W +++
Sbjct: 741 QMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAA 793
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 125/277 (45%), Gaps = 60/277 (21%)
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGG-FREEVTNLLDEMEMIQT 192
NSL+ YAK L +H F+++ +D VSW M+ G G F + V LD M+
Sbjct: 285 NSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLD---MVSE 341
Query: 193 DMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-----------HHIHLSTACGFVICS 241
P+ +L+ VL++CA ++ +G+ +H +V++ +++ CG +
Sbjct: 342 GFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETA 401
Query: 242 CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI--------------------- 280
+VF ++ R V WN ++S + G++ A+ + +++
Sbjct: 402 RAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDG 461
Query: 281 -----------VANVKPNTVTIVSVLPACLKLAALPQG-------LGTG----SFVWNAL 318
++++P+ T+ SVL AC L L G L TG S + NAL
Sbjct: 462 MALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNAL 521
Query: 319 IDMYGRCGAIQKSRKIF--VLMPHKNLVSWNVMISVY 353
I Y + G+++ +R+I ++ N++S+ ++ Y
Sbjct: 522 ISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGY 558
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 312 SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+F WN+L+ +Y + G + + +F MP ++ VSW +MI
Sbjct: 281 AFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMI 319
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 51/123 (41%), Gaps = 14/123 (11%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WTSM+ G E+ V LF M+ GV+PDH V AC+ GK Y+ M
Sbjct: 683 TWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQM 742
Query: 92 -----ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD--QDFLVNNSLIDFYAKCR 144
I + AC ++DL + G + + M D +V SL+ A CR
Sbjct: 743 QNEHGIVPQMSHYAC----MVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLL---AACR 795
Query: 145 YLK 147
K
Sbjct: 796 VRK 798
>gi|224126363|ref|XP_002329535.1| predicted protein [Populus trichocarpa]
gi|222870244|gb|EEF07375.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 95/353 (26%), Positives = 167/353 (47%), Gaps = 57/353 (16%)
Query: 17 ELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACS 76
E AF+ + ++ F N G YYE+ MI K V P+H+ P V K C+
Sbjct: 119 EPDAFMCNTIMRSFVNVNDPFGALRF--YYEK-------MIAKWVLPNHYTFPLVAKVCA 169
Query: 77 ELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN--- 133
++ R G+ V+ ++ FE + V+ + + CGR +F D F+++
Sbjct: 170 DIGSLREGQKVHALVVKFGFELDLFVRNSFIRFYSVCGRTSDARMVF---DNGFVLDLVS 226
Query: 134 -NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQT 192
NS+ID Y K L ++ F ++ ++D+ +WN+M++GY G E L D+M
Sbjct: 227 WNSMIDGYVKNGELGLAREIFDEMYERDIFTWNSMISGYVGVGDMEAARGLFDKMP---- 282
Query: 193 DMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRD 252
+ +S + ++ A++K V + + F+++ R+
Sbjct: 283 --SRDVVSWNCMIDGFARIKDVSM------------------------AAKFFDEMPLRN 316
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS 312
VV WN +++ ++R + D L ++ + P+ ++VSVL AC +L L QG S
Sbjct: 317 VVSWNVMLALYLRCKKYSDCLRFFDMMVGGDFVPDEASLVSVLTACAELKMLDQGKWVHS 376
Query: 313 FVWN-----------ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
++ + AL+ MY +CGA+ +R++F MP K++VSWN MI YG
Sbjct: 377 YMKDNGIKPDMLLSTALLTMYAKCGAMDLAREVFDKMPEKSVVSWNSMIIGYG 429
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 80/190 (42%), Gaps = 32/190 (16%)
Query: 21 FLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD 80
F L +W M+ +Y Y + + F +M+ PD V AC+ELK
Sbjct: 308 FFDEMPLRNVVSWNVMLALYLRCKKYSDCLRFFDMMVGGDFVPDEASLVSVLTACAELKM 367
Query: 81 YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFY 140
GK V+ YM K G + D L++ +L+ Y
Sbjct: 368 LDQGKWVHSYM---KDNG---------------------------IKPDMLLSTALLTMY 397
Query: 141 AKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTIS 200
AKC + ++ F K+ +K +VSWN+M+ GY + G ++ + EME + PN +
Sbjct: 398 AKCGAMDLAREVFDKMPEKSVVSWNSMIIGYGIHGHGDKALEMFREME--KGGPMPNDAT 455
Query: 201 LSGVLAACAQ 210
VL+AC+
Sbjct: 456 FMSVLSACSH 465
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 63/151 (41%), Gaps = 13/151 (8%)
Query: 216 LGKAIHGYVLRHHIHLSTACGFVICSC-SVFNQLSTRDVVVWNSIISAFVRSGQVVDALD 274
LG H + +I AC + C S++N + D + N+I+ +FV AL
Sbjct: 84 LGLFQHPFAASRYIKKLCACLNSVSHCVSLYNHIEEPDAFMCNTIMRSFVNVNDPFGALR 143
Query: 275 LLRDVIVAN-VKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNALIDMY 322
+ ++A V PN T V C + +L +G + FV N+ I Y
Sbjct: 144 FYYEKMIAKWVLPNHYTFPLVAKVCADIGSLREGQKVHALVVKFGFELDLFVRNSFIRFY 203
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
CG +R +F +LVSWN MI Y
Sbjct: 204 SVCGRTSDARMVFDNGFVLDLVSWNSMIDGY 234
>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
chloroplastic [Vitis vinifera]
gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
Length = 893
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 161/344 (46%), Gaps = 57/344 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W M+ + G V LF M+ +G+RPD F V L +G+ ++ Y++
Sbjct: 419 WAVMISAFAQSGSTGRAVELFQRMLQEGLRPDKFCSSSVLSIIDSLS---LGRLIHCYIL 475
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
I GLF D V +SL Y+KC L+ S+
Sbjct: 476 KI--------------------------GLF----TDISVGSSLFTMYSKCGSLEESYTV 505
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ KD VSW +M+ G++ E+ L EM+ +++P+ ++L+ L AC+ +
Sbjct: 506 FEQMPDKDNVSWASMITGFSEHDHAEQAVQLF--REMLLEEIRPDQMTLTAALTACSALH 563
Query: 213 GVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ GK +HGY LR + ++ + CG ++ + VF+ L +D +S++S
Sbjct: 564 SLEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAIVLARRVFDMLPQKDQFSCSSLVS 623
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGT 310
+ ++G + DAL L ++ +A++ ++ T+ SV+ A L +L GL
Sbjct: 624 GYAQNGYIEDALLLFHEIRMADLWIDSFTVSSVIGAVAILNSLDIGTQLHACVTKMGLNA 683
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V ++L+ MY +CG+I + K+F + +L+SW MI Y
Sbjct: 684 EVSVGSSLVTMYSKCGSIDECHKVFEQIEKPDLISWTAMIVSYA 727
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 91/386 (23%), Positives = 181/386 (46%), Gaps = 55/386 (14%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSM---------MGMYNVLGYYEEIVN 51
+E G V +I CG F+G+ +++++ M M + NV+ + I
Sbjct: 264 LEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVVSWTTIISG 323
Query: 52 LFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111
++ D + HF E++ +VG+ + +Y I+ AC + ++ +
Sbjct: 324 --FVQKDDSISAFHFF--------KEMR--KVGEKINNYTITSVL--TACTEPVMIKEAV 369
Query: 112 KCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-KDLVSWNAMLAG 170
+ +G + +D + V+++LI+ Y+K + +S F +++ K+L W M++
Sbjct: 370 QLHSWIFKTGFY--LDSN--VSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISA 425
Query: 171 YALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH 230
+A G L M +Q ++P+ S VL+ + + LG+ IH Y+L+ +
Sbjct: 426 FAQSGSTGRAVELFQRM--LQEGLRPDKFCSSSVLSI---IDSLSLGRLIHCYILKIGLF 480
Query: 231 -----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
+ + CG + S +VF Q+ +D V W S+I+ F A+ L R++
Sbjct: 481 TDISVGSSLFTMYSKCGSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREM 540
Query: 280 IVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAI 328
++ ++P+ +T+ + L AC L +L +G +G V AL++MY +CGAI
Sbjct: 541 LLEEIRPDQMTLTAALTACSALHSLEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAI 600
Query: 329 QKSRKIFVLMPHKNLVSWNVMISVYG 354
+R++F ++P K+ S + ++S Y
Sbjct: 601 VLARRVFDMLPQKDQFSCSSLVSGYA 626
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/348 (22%), Positives = 155/348 (44%), Gaps = 62/348 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ ++ + E+ V LF M+ + +RPD ACS L GK+V+ Y
Sbjct: 516 SWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTACSALHSLEKGKEVHGYA 575
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + V L++++ KCG + + +F+
Sbjct: 576 LRARVGKEVLVGGALVNMYSKCGAIVLARRVFD--------------------------- 608
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+ QKD S +++++GYA G+ E+ L E+ M D+ ++ ++S V+ A A +
Sbjct: 609 ---MLPQKDQFSCSSLVSGYAQNGYIEDALLLFHEIRM--ADLWIDSFTVSSVIGAVAIL 663
Query: 212 KGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ +G +H V + ++ + + CG + VF Q+ D++ W ++I
Sbjct: 664 NSLDIGTQLHACVTKMGLNAEVSVGSSLVTMYSKCGSIDECHKVFEQIEKPDLISWTAMI 723
Query: 261 SAFVRSGQVVDAL---DLLRDVIVANVKPNTVTIVSVLPAC------------LKLAALP 305
++ + G+ +AL DL+R KP++VT V VL AC L A
Sbjct: 724 VSYAQHGKGAEALKVYDLMRK---EGTKPDSVTFVGVLSACSHNGMVEEGYSHLNSMAKE 780
Query: 306 QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
G+ G + + ++D+ GR G ++++ + MP + + W ++++
Sbjct: 781 YGIEPGYYHYACMVDLLGRSGRLKEAERFINNMPIEPDALLWGILLAA 828
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 88/346 (25%), Positives = 144/346 (41%), Gaps = 55/346 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W ++ N +E+ F M G P+ F V AC+ L G+ VY
Sbjct: 114 SWNILISGCNQNFSFEDSWRNFCKMRFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLA 173
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F N V+ ++DLF K E +F QD L N
Sbjct: 174 LKNGFFSNGYVRAGMIDLFAKLCSFEDALRVF----QDVLCEN----------------- 212
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+V WNA+++G RE L +M PN+ + S +L ACA +
Sbjct: 213 ---------VVCWNAIISGAVKN--RENWVALDLFCQMCCRFFMPNSFTFSSILTACAAL 261
Query: 212 KGVKLGKAIHGYVLR----HHIHLSTACGFVICSCSVFNQ-------LSTRDVVVWNSII 260
+ ++ G+ + G+V++ + + TA + C +Q + R+VV W +II
Sbjct: 262 EELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVVSWTTII 321
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW----- 315
S FV+ + A +++ K N TI SVL AC + + + + S+++
Sbjct: 322 SGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKTGFY 381
Query: 316 ------NALIDMYGRCGAIQKSRKIFVLMPH-KNLVSWNVMISVYG 354
+ALI+MY + G + S ++F M KNL W VMIS +
Sbjct: 382 LDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFA 427
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 114/252 (45%), Gaps = 28/252 (11%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALG-GFREEVTNLL 184
+ + + NSL+ +Y K + + F K +++SWN +++G F + N
Sbjct: 77 LQSNTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILISGCNQNFSFEDSWRNFC 136
Query: 185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH-----------GYVLRHHIHL-S 232
+M + PN + VL+AC + G+ ++ GYV I L +
Sbjct: 137 ---KMRFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYVRAGMIDLFA 193
Query: 233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
C F + VF + +VV WN+IIS V++ + ALDL + PN+ T
Sbjct: 194 KLCSFED-ALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFS 252
Query: 293 SVLPACLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLMPHK 341
S+L AC L L G G FV A+ID+Y +C + ++ K F+ MP +
Sbjct: 253 SILTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIR 312
Query: 342 NLVSWNVMISVY 353
N+VSW +IS +
Sbjct: 313 NVVSWTTIISGF 324
>gi|125591533|gb|EAZ31883.1| hypothetical protein OsJ_16048 [Oryza sativa Japonica Group]
Length = 674
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 165/347 (47%), Gaps = 56/347 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRP-DHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M+ Y G + E ++LF ++ P D A S+ +D +G+ ++ Y+
Sbjct: 153 WNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSLGQQLHGYL 212
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + R L ++ N+L+ Y++C ++ +
Sbjct: 213 IK-------GMHRTL----------------------PVILGNALVVMYSRCGNVQTAFD 243
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +KD+V+WN M+ + F ++ LL EM ++ ++++L+ VL+A +
Sbjct: 244 LFDRLPEKDIVTWNTMVTAFIQNDF--DLEGLLLVYEMQKSGFAADSVTLTAVLSASSNT 301
Query: 212 KGVKLGKAIHGYVLRHHIH----------LSTACGFVICSCSVFNQL--STRDVVVWNSI 259
+++GK HGY++RH I + G V + VF+ + RD V WN++
Sbjct: 302 GDLQIGKQAHGYLIRHGIEGEGLESYLIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNAM 361
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA------------ALPQG 307
I+ + +SGQ A+ + R ++ A ++P +VT+ SVLPAC + A+ +
Sbjct: 362 IAGYTQSGQPEKAILVFRAMLEAGLEPTSVTLASVLPACDPVGGGVYSGKQIHCFAVRRC 421
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L T FV ALIDMY +CG I + +F M K+ V++ MIS G
Sbjct: 422 LDTNVFVGTALIDMYSKCGEITTAENVFGGMTGKSTVTYTTMISGLG 468
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/346 (23%), Positives = 158/346 (45%), Gaps = 54/346 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W ++ G Y G +E + LF M++ G RP ++ A V D
Sbjct: 50 SWNTLFGWYVKTGRPQEALELFVRMLEDGFRPTPVSFVNIFPAA-------VADDP---- 98
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
S F+ L L +K G E D V +S ID +++ ++ +
Sbjct: 99 -SWPFQ--------LYGLLVKYGV---------EYINDLFVVSSAIDMFSEFGDVQSARR 140
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +K+ WN M+ GY G E +L ++ + ++ + ++ L A +Q
Sbjct: 141 VFDRAAKKNTEVWNTMITGYVQNGQFSEAIDLFSKI-LGSREVPLDVVTFLSALTAASQS 199
Query: 212 KGVKLGKAIHGYVLR--HH----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ V LG+ +HGY+++ H + + + CG V + +F++L +D+V WN++
Sbjct: 200 QDVSLGQQLHGYLIKGMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEKDIVTWNTM 259
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGT--------- 310
++AF+++ ++ L L+ ++ + ++VT+ +VL A L G
Sbjct: 260 VTAFIQNDFDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHGI 319
Query: 311 -GSFVWNALIDMYGRCGAIQKSRKIFVLMPH--KNLVSWNVMISVY 353
G + + LIDMY + G ++ ++++F + ++ V+WN MI+ Y
Sbjct: 320 EGEGLESYLIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNAMIAGY 365
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 129/289 (44%), Gaps = 43/289 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M+ + + E + L Y M G D V A S D ++GK + Y+
Sbjct: 255 TWNTMVTAFIQNDFDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQAHGYL 314
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I EG ++ L+D++ K GR+E+ +F+
Sbjct: 315 IRHGIEGEG-LESYLIDMYAKSGRVEMAQRVFDSF------------------------- 348
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
K ++D V+WNAM+AGY G E+ +L M++ ++P +++L+ VL AC V
Sbjct: 349 ---KNAKRDEVTWNAMIAGYTQSGQPEKA--ILVFRAMLEAGLEPTSVTLASVLPACDPV 403
Query: 212 KG-VKLGKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
G V GK IH + +R ++ + TA CG + + +VF ++ + V + ++
Sbjct: 404 GGGVYSGKQIHCFAVRRCLDTNVFVGTALIDMYSKCGEITTAENVFGGMTGKSTVTYTTM 463
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
IS + G AL L + +KP+ VT +S + AC + +GL
Sbjct: 464 ISGLGQHGFGKKALALFNSMQEKGLKPDAVTFLSAISACNYSGLVDEGL 512
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 125/253 (49%), Gaps = 32/253 (12%)
Query: 131 LVNNSLIDFYAKC-RY----LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
++ NSL++ YA RY + V F + ++++VSWN + Y G +E L
Sbjct: 13 VLRNSLLNLYASSVRYREARVDVVRRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELF- 71
Query: 186 EMEMIQTDMQPNTISLSGVLAACA--------QVKG--VKLG-KAIHG-YVLRHHIHLST 233
+ M++ +P +S + A Q+ G VK G + I+ +V+ I + +
Sbjct: 72 -VRMLEDGFRPTPVSFVNIFPAAVADDPSWPFQLYGLLVKYGVEYINDLFVVSSAIDMFS 130
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP-NTVTIV 292
G V + VF++ + ++ VWN++I+ +V++GQ +A+DL ++ + P + VT +
Sbjct: 131 EFGDVQSARRVFDRAAKKNTEVWNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFL 190
Query: 293 SVLPACLKLAALPQGLGTGSF------------VWNALIDMYGRCGAIQKSRKIFVLMPH 340
S L A + + G + + NAL+ MY RCG +Q + +F +P
Sbjct: 191 SALTAASQSQDVSLGQQLHGYLIKGMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPE 250
Query: 341 KNLVSWNVMISVY 353
K++V+WN M++ +
Sbjct: 251 KDIVTWNTMVTAF 263
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 90/230 (39%), Gaps = 53/230 (23%)
Query: 1 MELGIQVHAHLIVCGVE---LCAFL------------GSQLLEVFCN-------WTSMMG 38
+++G Q H +LI G+E L ++L ++ + F N W +M+
Sbjct: 304 LQIGKQAHGYLIRHGIEGEGLESYLIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNAMIA 363
Query: 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
Y G E+ + +F M++ G+ P V AC VG VY F
Sbjct: 364 GYTQSGQPEKAILVFRAMLEAGLEPTSVTLASVLPACDP-----VGGGVYSGKQIHCFAV 418
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
C +D + V +LID Y+KC + + F +
Sbjct: 419 RRC------------------------LDTNVFVGTALIDMYSKCGEITTAENVFGGMTG 454
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
K V++ M++G GF ++ L + M+ + ++P+ ++ ++AC
Sbjct: 455 KSTVTYTTMISGLGQHGFGKKALALFNSMQ--EKGLKPDAVTFLSAISAC 502
>gi|449484072|ref|XP_004156776.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Cucumis sativus]
Length = 754
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 99/345 (28%), Positives = 169/345 (48%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTS++ +++ G E ++LF+ M + PD V + +G D +
Sbjct: 278 SWTSIIAVHSKFGLMSECLHLFWEMQASEIIPDEIVISCML----------MGFGNSDRI 327
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
FEG A R L C IT +N+L+ Y K +L ++
Sbjct: 328 ----FEGKAFHARILKQC---CALSGIT-------------HNALLSMYCKFGHLGTANK 367
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K W+ M+ GY+ G +E+ + L EM ++ +P+ SL V+++C+QV
Sbjct: 368 IFHSF-HKSSEDWSTMILGYSNMGQKEKCISFLREMLLL--GREPDLNSLVSVISSCSQV 424
Query: 212 KGVKLGKAIHGYVLRHHI--HLSTA---------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ +G++IH Y +++ I ++S A G V + +F++ RDV+ WN++I
Sbjct: 425 GAINIGRSIHCYAIKNSIIENVSVANSLMDMYGKSGHVTATWRIFHRTLQRDVISWNTLI 484
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------- 313
S++ +SG + +A+ L ++ V PN VT + VL AC LA+L +G +
Sbjct: 485 SSYKQSGILAEAIILFDKMVKEKVYPNKVTCIIVLSACAHLASLDEGEKIHQYIKENGFE 544
Query: 314 ----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ ALIDMY +CG ++ SRK+F ++++ WNVMIS YG
Sbjct: 545 SNITIRTALIDMYAKCGELETSRKLFNSTEERDVILWNVMISNYG 589
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/330 (24%), Positives = 154/330 (46%), Gaps = 54/330 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W++M+ Y+ +G E+ ++ M+ G PD V +CS++ +G+ ++ Y
Sbjct: 378 DWSTMILGYSNMGQKEKCISFLREMLLLGREPDLNSLVSVISSCSQVGAINIGRSIHCYA 437
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I N+ + ++ V NSL+D Y K ++ +
Sbjct: 438 IK-----NSII-------------------------ENVSVANSLMDMYGKSGHVTATWR 467
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + Q+D++SWN +++ Y G E L D+M ++ + PN ++ VL+ACA +
Sbjct: 468 IFHRTLQRDVISWNTLISSYKQSGILAEAIILFDKM--VKEKVYPNKVTCIIVLSACAHL 525
Query: 212 KGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ G+ IH Y+ +I + TA CG + S +FN RDV++WN +I
Sbjct: 526 ASLDEGEKIHQYIKENGFESNITIRTALIDMYAKCGELETSRKLFNSTEERDVILWNVMI 585
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLG 309
S + G V A+++ + + +N+KPN T +S+L AC + + G+
Sbjct: 586 SNYGMHGHVESAMEIFQLMEESNIKPNAQTFLSLLSACNHTGHVLEGRHLFDRMQKYGIE 645
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+ ++ID+ GR G+++ + + + MP
Sbjct: 646 PSLKHYASIIDLLGRSGSLEAAEALVLSMP 675
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 127/247 (51%), Gaps = 29/247 (11%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
+V ++++ Y++C + ++ F K+ QKDL+SW +++A ++ G E +L EM+
Sbjct: 246 VVKSTILSMYSRCGSPEEAYRCFCKLDQKDLISWTSIIAVHSKFGLMSECLHLFWEMQ-- 303
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR---------HHIHLSTAC--GFVI 239
+++ P+ I +S +L + GKA H +L+ H+ LS C G +
Sbjct: 304 ASEIIPDEIVISCMLMGFGNSDRIFEGKAFHARILKQCCALSGITHNALLSMYCKFGHLG 363
Query: 240 CSCSVFNQL--STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ +F+ S+ D W+++I + GQ + LR++++ +P+ ++VSV+ +
Sbjct: 364 TANKIFHSFHKSSED---WSTMILGYSNMGQKEKCISFLREMLLLGREPDLNSLVSVISS 420
Query: 298 CLKLAALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
C ++ A+ G + V N+L+DMYG+ G + + +IF ++++SW
Sbjct: 421 CSQVGAINIGRSIHCYAIKNSIIENVSVANSLMDMYGKSGHVTATWRIFHRTLQRDVISW 480
Query: 347 NVMISVY 353
N +IS Y
Sbjct: 481 NTLISSY 487
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 114/241 (47%), Gaps = 25/241 (10%)
Query: 136 LIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ 195
L+ FYA R S F I KD+ WN+++ + G + + ++M +
Sbjct: 48 LMAFYAYHRKPAFSTHLFRLIHSKDIFLWNSIIQSHFSNGDYQRAFDFY--LQMRASSSL 105
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIHGYVLR------------HHIHLSTACGFVICSCS 243
PN ++ V++ CA++ G IHG + I++ + CG V +
Sbjct: 106 PNQFTVPMVVSTCAELMMFNHGMNIHGLTSKLGLFVGNSAIGSSFIYMYSKCGHVESASI 165
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
+F++++ +DVV W ++I +V++ + L L ++ PN TI S AC+ L A
Sbjct: 166 MFSEITVKDVVTWTALIVGYVQNNESGRGLKCLFEMHRIGGTPNYKTIGSGFQACVDLDA 225
Query: 304 LPQG-------LGTG----SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
L +G L G V + ++ MY RCG+ +++ + F + K+L+SW +I+V
Sbjct: 226 LVEGKCLHGLALKNGFLCFEVVKSTILSMYSRCGSPEEAYRCFCKLDQKDLISWTSIIAV 285
Query: 353 Y 353
+
Sbjct: 286 H 286
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/344 (22%), Positives = 135/344 (39%), Gaps = 56/344 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ + G Y+ + + M P+ F P V C+EL + G +++
Sbjct: 76 WNSIIQSHFSNGDYQRAFDFYLQMRASSSLPNQFTVPMVVSTCAELMMFNHGMNIHGLTS 135
Query: 93 SIK-FEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F GN+ + +S I Y+KC +++ +
Sbjct: 136 KLGLFVGNSAI------------------------------GSSFIYMYSKCGHVESASI 165
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS+I KD+V+W A++ GY E L EM + PN ++ AC +
Sbjct: 166 MFSEITVKDVVTWTALIVGYVQNN--ESGRGLKCLFEMHRIGGTPNYKTIGSGFQACVDL 223
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ GK +HG L++ + + + CG + F +L +D++ W SII
Sbjct: 224 DALVEGKCLHGLALKNGFLCFEVVKSTILSMYSRCGSPEEAYRCFCKLDQKDLISWTSII 283
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA-----------CLKLAALPQGLG 309
+ + G + + L L ++ + + P+ + I +L L Q
Sbjct: 284 AVHSKFGLMSECLHLFWEMQASEIIPDEIVISCMLMGFGNSDRIFEGKAFHARILKQCCA 343
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
NAL+ MY + G + + KIF HK+ W+ MI Y
Sbjct: 344 LSGITHNALLSMYCKFGHLGTANKIFHSF-HKSSEDWSTMILGY 386
>gi|359497527|ref|XP_003635554.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Vitis vinifera]
gi|296083555|emb|CBI23551.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 110/397 (27%), Positives = 192/397 (48%), Gaps = 62/397 (15%)
Query: 6 QVHAHLIVCGV-ELCAFLGSQLLEVFCNWTSMMGMY--NVL------------------- 43
QVHA +++ G+ L L Q+L N+++ + Y +VL
Sbjct: 22 QVHALILIHGLSHLEPILARQILLSASNYSATVAQYVHSVLHHSKSPDSFSWACAIRFST 81
Query: 44 --GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGK-DVYDYMISIKFEGNA 100
G ++E L+ M G+ P F KAC+ + YR+G ++ + F G
Sbjct: 82 QHGQFKEAFALYVQMQRWGLWPTTFALSSALKACARIA-YRMGGLSIHGQVQKFGFSGGG 140
Query: 101 ---CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKI 156
V+ L+D + K G MEI +F+EM + +V+ NS++ Y K L V+ F +I
Sbjct: 141 DGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEI 200
Query: 157 KQKDLVSWNAMLAGYALGGFREEVTNLLDEME---------MIQTDMQPNTI-SLSGVLA 206
QKD++SWN+M++GYA G E+ +L +M MI ++ I S
Sbjct: 201 PQKDVISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDIDSARSFFD 260
Query: 207 ACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
A Q V I GY + CG V +C +F+Q+ +D++++N++I+ + ++
Sbjct: 261 AMPQRNNVSWMTMISGY---------SKCGDVDSACELFDQVGGKDLLLFNAMIACYAQN 311
Query: 267 GQVVDALDLLRDVIVA--NVKPNTVTIVSVLPACLKLAALPQGLGTGSF----------- 313
+ +AL L +++ NV+P+ +T+ SV+ AC +L L G S+
Sbjct: 312 SRPKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGH 371
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ AL+D+Y +CG+I K+ ++F + K+LV++ MI
Sbjct: 372 LATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMI 408
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 135/266 (50%), Gaps = 23/266 (8%)
Query: 97 EGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSK 155
E N ++ +++ G ++ F+ M Q V+ ++I Y+KC + + F +
Sbjct: 233 ERNFASWNAMISGYVEFGDIDSARSFFDAMPQRNNVSWMTMISGYSKCGDVDSACELFDQ 292
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
+ KDL+ +NAM+A YA +E L + M ++QP+ ++L+ V++AC+Q+ ++
Sbjct: 293 VGGKDLLLFNAMIACYAQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLR 352
Query: 216 LGKAIHGYVLRHHI----HLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
G I Y+ R I HL+TA CG + + +F+ L +D+V + ++I
Sbjct: 353 FGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCG 412
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV---------- 314
+G+ +DA+ L +++ A + PN++T + +L A + +G + +
Sbjct: 413 INGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEGYHCFTSMKKYNLVPSVD 472
Query: 315 -WNALIDMYGRCGAIQKSRKIFVLMP 339
+ ++D++GR G +Q++ ++ MP
Sbjct: 473 HYGIMVDLFGRAGRLQEALELIKSMP 498
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 100/222 (45%), Gaps = 21/222 (9%)
Query: 150 HCKFSKIKQKDLVSWN-AMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
H K D SW A+ G F+E + +M + + P T +LS L AC
Sbjct: 59 HSVLHHSKSPDSFSWACAIRFSTQHGQFKEAFALYV---QMQRWGLWPTTFALSSALKAC 115
Query: 209 AQVKGVKLGKAIHGYVLR-------HHIHLSTACGFVICSCS-------VFNQLSTRDVV 254
A++ G +IHG V + I++ TA C +F++++ R+VV
Sbjct: 116 ARIAYRMGGLSIHGQVQKFGFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVV 175
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA--CLKLAALPQGLGTGS 312
WNS+++ +++SG +V A + ++ +V I A K +L Q + +
Sbjct: 176 SWNSMLAGYLKSGDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKALSLFQQMPERN 235
Query: 313 FV-WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
F WNA+I Y G I +R F MP +N VSW MIS Y
Sbjct: 236 FASWNAMISGYVEFGDIDSARSFFDAMPQRNNVSWMTMISGY 277
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 77/185 (41%), Gaps = 39/185 (21%)
Query: 197 NTISLSGVLAACAQVKGVKLGKAIHGYVLRH---HIHLSTACGFVICSC----------- 242
+TISLS VK K +H +L H H+ A ++ +
Sbjct: 11 STISLS-----------VKQAKQVHALILIHGLSHLEPILARQILLSASNYSATVAQYVH 59
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
SV + + D W I + GQ +A L + + P T + S L AC ++A
Sbjct: 60 SVLHHSKSPDSFSWACAIRFSTQHGQFKEAFALYVQMQRWGLWPTTFALSSALKACARIA 119
Query: 303 ALPQGL--------------GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
GL G G +V AL+D Y + G ++ +RK+F M +N+VSWN
Sbjct: 120 YRMGGLSIHGQVQKFGFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNS 179
Query: 349 MISVY 353
M++ Y
Sbjct: 180 MLAGY 184
>gi|449460752|ref|XP_004148109.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Cucumis sativus]
Length = 784
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 99/345 (28%), Positives = 169/345 (48%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTS++ +++ G E ++LF+ M + PD V + +G D +
Sbjct: 308 SWTSIIAVHSKFGLMSECLHLFWEMQASEIIPDEIVISCML----------MGFGNSDRI 357
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
FEG A R L C IT +N+L+ Y K +L ++
Sbjct: 358 ----FEGKAFHARILKQC---CALSGIT-------------HNALLSMYCKFGHLGTANK 397
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K W+ M+ GY+ G +E+ + L EM ++ +P+ SL V+++C+QV
Sbjct: 398 IFHSF-HKSSEDWSTMILGYSNMGQKEKCISFLREMLLL--GREPDLNSLVSVISSCSQV 454
Query: 212 KGVKLGKAIHGYVLRHHI--HLSTA---------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ +G++IH Y +++ I ++S A G V + +F++ RDV+ WN++I
Sbjct: 455 GAINIGRSIHCYAIKNSIIENVSVANSLMDMYGKSGHVTATWRIFHRTLQRDVISWNTLI 514
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------- 313
S++ +SG + +A+ L ++ V PN VT + VL AC LA+L +G +
Sbjct: 515 SSYKQSGILAEAIILFDKMVKEKVYPNKVTCIIVLSACAHLASLDEGEKIHQYIKENGFE 574
Query: 314 ----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ ALIDMY +CG ++ SRK+F ++++ WNVMIS YG
Sbjct: 575 SNITIRTALIDMYAKCGELETSRKLFNSTEERDVILWNVMISNYG 619
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/330 (24%), Positives = 154/330 (46%), Gaps = 54/330 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W++M+ Y+ +G E+ ++ M+ G PD V +CS++ +G+ ++ Y
Sbjct: 408 DWSTMILGYSNMGQKEKCISFLREMLLLGREPDLNSLVSVISSCSQVGAINIGRSIHCYA 467
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I N+ + ++ V NSL+D Y K ++ +
Sbjct: 468 IK-----NSII-------------------------ENVSVANSLMDMYGKSGHVTATWR 497
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + Q+D++SWN +++ Y G E L D+M ++ + PN ++ VL+ACA +
Sbjct: 498 IFHRTLQRDVISWNTLISSYKQSGILAEAIILFDKM--VKEKVYPNKVTCIIVLSACAHL 555
Query: 212 KGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ G+ IH Y+ +I + TA CG + S +FN RDV++WN +I
Sbjct: 556 ASLDEGEKIHQYIKENGFESNITIRTALIDMYAKCGELETSRKLFNSTEERDVILWNVMI 615
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLG 309
S + G V A+++ + + +N+KPN T +S+L AC + + G+
Sbjct: 616 SNYGMHGHVESAMEIFQLMEESNIKPNAQTFLSLLSACNHTGHVLEGRHLFDRMQKYGIE 675
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+ ++ID+ GR G+++ + + + MP
Sbjct: 676 PSLKHYASIIDLLGRSGSLEAAEALVLSMP 705
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 127/247 (51%), Gaps = 29/247 (11%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
+V ++++ Y++C + ++ F K+ QKDL+SW +++A ++ G E +L EM+
Sbjct: 276 VVKSTILSMYSRCGSPEEAYRCFCKLDQKDLISWTSIIAVHSKFGLMSECLHLFWEMQ-- 333
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR---------HHIHLSTAC--GFVI 239
+++ P+ I +S +L + GKA H +L+ H+ LS C G +
Sbjct: 334 ASEIIPDEIVISCMLMGFGNSDRIFEGKAFHARILKQCCALSGITHNALLSMYCKFGHLG 393
Query: 240 CSCSVFNQL--STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ +F+ S+ D W+++I + GQ + LR++++ +P+ ++VSV+ +
Sbjct: 394 TANKIFHSFHKSSED---WSTMILGYSNMGQKEKCISFLREMLLLGREPDLNSLVSVISS 450
Query: 298 CLKLAALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
C ++ A+ G + V N+L+DMYG+ G + + +IF ++++SW
Sbjct: 451 CSQVGAINIGRSIHCYAIKNSIIENVSVANSLMDMYGKSGHVTATWRIFHRTLQRDVISW 510
Query: 347 NVMISVY 353
N +IS Y
Sbjct: 511 NTLISSY 517
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 114/241 (47%), Gaps = 25/241 (10%)
Query: 136 LIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ 195
L+ FYA R S F I KD+ WN+++ + G + + ++M +
Sbjct: 78 LMAFYAYHRKPAFSTHLFRLIHSKDIFLWNSIIQSHFSNGDYQRAFDFY--LQMRASSSL 135
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIHGYVLR------------HHIHLSTACGFVICSCS 243
PN ++ V++ CA++ G IHG + I++ + CG V +
Sbjct: 136 PNQFTVPMVVSTCAELMMFNHGMNIHGLTSKLGLFVGNSAIGSSFIYMYSKCGHVESASI 195
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
+F++++ +DVV W ++I +V++ + L L ++ PN TI S AC+ L A
Sbjct: 196 MFSEITVKDVVTWTALIVGYVQNNESGRGLKCLFEMHRIGGTPNYKTIGSGFQACVDLDA 255
Query: 304 LPQG-------LGTG----SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
L +G L G V + ++ MY RCG+ +++ + F + K+L+SW +I+V
Sbjct: 256 LVEGKCLHGLALKNGFLCFEVVKSTILSMYSRCGSPEEAYRCFCKLDQKDLISWTSIIAV 315
Query: 353 Y 353
+
Sbjct: 316 H 316
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/344 (22%), Positives = 135/344 (39%), Gaps = 56/344 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ + G Y+ + + M P+ F P V C+EL + G +++
Sbjct: 106 WNSIIQSHFSNGDYQRAFDFYLQMRASSSLPNQFTVPMVVSTCAELMMFNHGMNIHGLTS 165
Query: 93 SIK-FEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F GN+ + +S I Y+KC +++ +
Sbjct: 166 KLGLFVGNSAI------------------------------GSSFIYMYSKCGHVESASI 195
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS+I KD+V+W A++ GY E L EM + PN ++ AC +
Sbjct: 196 MFSEITVKDVVTWTALIVGYVQNN--ESGRGLKCLFEMHRIGGTPNYKTIGSGFQACVDL 253
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ GK +HG L++ + + + CG + F +L +D++ W SII
Sbjct: 254 DALVEGKCLHGLALKNGFLCFEVVKSTILSMYSRCGSPEEAYRCFCKLDQKDLISWTSII 313
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA-----------CLKLAALPQGLG 309
+ + G + + L L ++ + + P+ + I +L L Q
Sbjct: 314 AVHSKFGLMSECLHLFWEMQASEIIPDEIVISCMLMGFGNSDRIFEGKAFHARILKQCCA 373
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
NAL+ MY + G + + KIF HK+ W+ MI Y
Sbjct: 374 LSGITHNALLSMYCKFGHLGTANKIFHSF-HKSSEDWSTMILGY 416
>gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Cucumis sativus]
gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Cucumis sativus]
Length = 837
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 158/345 (45%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ Y Y E V L M G +PD + C V +C + + G+ ++ Y+
Sbjct: 311 SWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQIHSYV 370
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + C ++ D V N+LID Y+KC L +
Sbjct: 371 IKV------------------C------------LEHDNFVTNALIDMYSKCNALDDAKR 400
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +V +NAM+ GY+ G+ + EM + + P+ ++ +L A +
Sbjct: 401 VFDVVTCHSVVYYNAMIEGYSRQGYLCGALEVFQEMRL--KHVSPSFLTFVSLLGLSAAL 458
Query: 212 KGVKLGKAIHGYVLRHHIHL----STACGFVICSCS-------VFNQLSTRDVVVWNSII 260
++L K IHG ++++ L S+A V CS VF + +D+VVWNS+
Sbjct: 459 LCLQLSKQIHGLIIKYGFSLDKFTSSALIDVYSKCSCIRDARYVFEGTTNKDIVVWNSLF 518
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
S + + +A L D+ ++ +PN T ++ A LA+LP G L
Sbjct: 519 SGYNLQLKSEEAFKLYSDLQLSRERPNEFTFAALTTAASILASLPHGQQFHNQVMKMGLE 578
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ F+ NAL+DMY +CG+++++ KIF K+ WN MIS+Y
Sbjct: 579 SDPFITNALVDMYAKCGSVEEAEKIFSSSVWKDTACWNSMISMYA 623
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 96/395 (24%), Positives = 177/395 (44%), Gaps = 75/395 (18%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
E G QVH+++I G ++G+ L+ ++ WT+++ Y
Sbjct: 159 EPGSQVHSYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGY 218
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G E + LF LM++ V PD +V + ACS L + GK ++ Y++ + + +
Sbjct: 219 TKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDV 278
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
L+D + KCGR++ LF+ +D K+
Sbjct: 279 STYNVLIDFYTKCGRVKAGKALFDRLD------------------------------VKN 308
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
++SW M+AGY + E L+ EM + +P+ + S VL +C V ++ G+ I
Sbjct: 309 IISWTTMIAGYMQNSYDWEAVELVG--EMFRMGWKPDEYACSSVLTSCGSVDALQHGRQI 366
Query: 221 HGYVLR---HH--------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H YV++ H I + + C + + VF+ ++ VV +N++I + R G +
Sbjct: 367 HSYVIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGYSRQGYL 426
Query: 270 VDALDLLRDVIVANVKPNTVTIVSV-----------LPACLKLAALPQGLGTGSFVWNAL 318
AL++ +++ + +V P+ +T VS+ L + + G F +AL
Sbjct: 427 CGALEVFQEMRLKHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFSLDKFTSSAL 486
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
ID+Y +C I+ +R +F +K++V WN + S Y
Sbjct: 487 IDVYSKCSCIRDARYVFEGTTNKDIVVWNSLFSGY 521
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 97/394 (24%), Positives = 179/394 (45%), Gaps = 78/394 (19%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNVLG 44
+VH +++ G++ FL + LL + +W+S++ MY LG
Sbjct: 61 KVHCQVVLWGLQYDVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQLG 120
Query: 45 YYEEIVNLFYLMIDKGV--RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
Y E+ + L++L + + + ++ + +AC + G V+ Y+I F
Sbjct: 121 YNEKAL-LYFLEFQRTCVDKLNEYILASIIRACVQRDGGEPGSQVHSYVIKSGF------ 173
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+D V SL+ YAK + + F + K V
Sbjct: 174 ------------------------GEDVYVGTSLVVLYAKHGEIDKARLVFDGLVLKTPV 209
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+W A++ GY G R EV+ L + M+++++ P+ LS +L AC+ + +K GK IH
Sbjct: 210 TWTAIITGYTKSG-RSEVSLQLFNL-MMESNVIPDKYVLSSILNACSVLGYLKGGKQIHA 267
Query: 223 YVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
YVLR I T CG V ++F++L ++++ W ++I+ ++++ +
Sbjct: 268 YVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAGYMQNSYDWE 327
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALID 320
A++L+ ++ KP+ SVL +C + AL G L +FV NALID
Sbjct: 328 AVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNFVTNALID 387
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
MY +C A+ ++++F ++ ++V +N MI Y
Sbjct: 388 MYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGYS 421
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 110/232 (47%), Gaps = 24/232 (10%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D +++LID Y+KC ++ + F KD+V WN++ +GY L EE L +++
Sbjct: 479 DKFTSSALIDVYSKCSCIRDARYVFEGTTNKDIVVWNSLFSGYNLQLKSEEAFKLYSDLQ 538
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGF 237
+ + +PN + + + A + + + G+ H V++ + + CG
Sbjct: 539 LSRE--RPNEFTFAALTTAASILASLPHGQQFHNQVMKMGLESDPFITNALVDMYAKCGS 596
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
V + +F+ +D WNS+IS + + G+V +AL + ++ N+ PN VT VSVL A
Sbjct: 597 VEEAEKIFSSSVWKDTACWNSMISMYAQHGKVEEALRMFETMVSNNINPNYVTFVSVLSA 656
Query: 298 CLKLAALPQGLG-----------TGSFVWNALIDMYGRCGAIQKSRKIFVLM 338
C + + GL G + +++ + GR G + ++R+ M
Sbjct: 657 CSHVGFVEDGLQHYNSMARYGIEPGIEHYASVVTLLGRAGRLTEAREFIEKM 708
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/318 (20%), Positives = 122/318 (38%), Gaps = 76/318 (23%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMY 40
+L Q+H +I G L F S L++V+ W S+ Y
Sbjct: 462 QLSKQIHGLIIKYGFSLDKFTSSALIDVYSKCSCIRDARYVFEGTTNKDIVVWNSLFSGY 521
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
N+ EE L+ + RP+ F + A S L G+ ++ ++ + E
Sbjct: 522 NLQLKSEEAFKLYSDLQLSRERPNEFTFAALTTAASILASLPHGQQFHNQVMKMGLES-- 579
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
D + N+L+D YAKC ++ + FS KD
Sbjct: 580 ----------------------------DPFITNALVDMYAKCGSVEEAEKIFSSSVWKD 611
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
WN+M++ YA G EE + + M+ ++ PN ++ VL+AC+ V V+ G
Sbjct: 612 TACWNSMISMYAQHGKVEEALRMFE--TMVSNNINPNYVTFVSVLSACSHVGFVEDGLQH 669
Query: 221 HGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280
+ + R+ I + + S+++ R+G++ +A + + +
Sbjct: 670 YNSMARYGIEPG--------------------IEHYASVVTLLGRAGRLTEAREFIEKM- 708
Query: 281 VANVKPNTVTIVSVLPAC 298
++P + S+L AC
Sbjct: 709 --TIRPAALVWRSLLSAC 724
>gi|15240572|ref|NP_200385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171613|sp|Q9FM64.1|PP431_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g55740, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 21; Flags: Precursor
gi|9758608|dbj|BAB09241.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332009292|gb|AED96675.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 830
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 162/345 (46%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++G+ +G E + F M++ + PD+FV P V KAC LK R G+ V+ Y+
Sbjct: 140 SWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYV 199
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ E CV V +SL D Y KC L +
Sbjct: 200 VKSGLED--CV----------------------------FVASSLADMYGKCGVLDDASK 229
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I ++ V+WNA++ GY G EE L +M + ++P +++S L+A A +
Sbjct: 230 VFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMR--KQGVEPTRVTVSTCLSASANM 287
Query: 212 KGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSII 260
GV+ GK H + + + L G + + VF+++ +DVV WN II
Sbjct: 288 GGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLII 347
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
S +V+ G V DA+ + + + + +K + VT+ +++ A + L G
Sbjct: 348 SGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFE 407
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + + ++DMY +CG+I ++K+F K+L+ WN +++ Y
Sbjct: 408 SDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYA 452
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 96/426 (22%), Positives = 183/426 (42%), Gaps = 87/426 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q HA IV G+EL LG+ LL +C W ++
Sbjct: 290 VEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISG 349
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G E+ + + LM + ++ D + A + ++ ++GK+V Y I FE +
Sbjct: 350 YVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESD 409
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEE-MDQDFLVNNSLIDFYAKC--------------- 143
+ ++D++ KCG + +F+ +++D ++ N+L+ YA+
Sbjct: 410 IVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQL 469
Query: 144 ------------------RYLKVSHCK--FSKIKQK----DLVSWNAMLAGYALGGFREE 179
R +V K F +++ +L+SW M+ G G EE
Sbjct: 470 EGVPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMMNGMVQNGCSEE 529
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS------- 232
L +M+ ++ ++PN S++ L+ACA + + +G+ IHGY++R+ H S
Sbjct: 530 AILFLRKMQ--ESGLRPNAFSITVALSACAHLASLHIGRTIHGYIIRNLQHSSLVSIETS 587
Query: 233 -----TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
CG + + VF ++ + N++ISA+ G + +A+ L R + +KP+
Sbjct: 588 LVDMYAKCGDINKAEKVFGSKLYSELPLSNAMISAYALYGNLKEAIALYRSLEGVGLKPD 647
Query: 288 TVTIVSVLPACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIF 335
+TI +VL AC + Q + + + + ++D+ G +K+ ++
Sbjct: 648 NITITNVLSACNHAGDINQAIEIFTDIVSKRSMKPCLEHYGLMVDLLASAGETEKALRLI 707
Query: 336 VLMPHK 341
MP K
Sbjct: 708 EEMPFK 713
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 147/299 (49%), Gaps = 32/299 (10%)
Query: 77 ELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSL 136
+ ++ R+G ++Y ++ CV L + + +G F ++ + L
Sbjct: 62 DFRNLRIGPEIYGEIL------QGCVYERDLSTGKQIHARILKNGDFYARNE--YIETKL 113
Query: 137 IDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP 196
+ FYAKC L+++ FSK++ +++ SW A++ G E L+ +EM++ ++ P
Sbjct: 114 VIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRIGLCEGA--LMGFVEMLENEIFP 171
Query: 197 NTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVF 245
+ + V AC +K + G+ +HGYV++ + + CG + + VF
Sbjct: 172 DNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVF 231
Query: 246 NQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA--- 302
+++ R+ V WN+++ +V++G+ +A+ L D+ V+P VT+ + L A +
Sbjct: 232 DEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVE 291
Query: 303 --------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
A+ G+ + + +L++ Y + G I+ + +F M K++V+WN++IS Y
Sbjct: 292 EGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISGY 350
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/385 (21%), Positives = 162/385 (42%), Gaps = 92/385 (23%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYN 41
G VH +++ G+E C F+ S L +++ W ++M Y
Sbjct: 191 FGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYV 250
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G EE + LF M +GV P A + + GK +
Sbjct: 251 QNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEGKQSH------------- 297
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ I +G M+ D ++ SL++FY K ++ + F ++ +KD+
Sbjct: 298 -------------AIAIVNG----MELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDV 340
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
V+WN +++GY G E+ + M + ++ + ++L+ +++A A+ + +KLGK +
Sbjct: 341 VTWNLIISGYVQQGLVEDAIYMCQLMRL--EKLKYDCVTLATLMSAAARTENLKLGKEVQ 398
Query: 222 GYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y +RH + + CG ++ + VF+ +D+++WN++++A+ SG
Sbjct: 399 CYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSG 458
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQK 330
+AL L + + V PN +T WN +I R G + +
Sbjct: 459 EALRLFYGMQLEGVPPNVIT------------------------WNLIILSLLRNGQVDE 494
Query: 331 SRKIFVLMPHK----NLVSWNVMIS 351
++ +F+ M NL+SW M++
Sbjct: 495 AKDMFLQMQSSGIIPNLISWTTMMN 519
>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
Length = 677
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 151/322 (46%), Gaps = 65/322 (20%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G Y++ + +F M ++G PD++ P V KACS GN V
Sbjct: 116 GLYQDALLVFKTMANQGFYPDNYTYPCVLKACS-------------------VSGNLWVG 156
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
+ +K G +D + + N L+ Y KC++L + ++ +D+VS
Sbjct: 157 LQIHGAVVKLG-----------LDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVS 205
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
WN+M+AGYA G + L EME ++ ++P+ ++ +L A
Sbjct: 206 WNSMVAGYAQNGRFNDALKLCREMEDLK--LKPDAGTMGSLLPAVT-------------- 249
Query: 224 VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283
+T+C V+ +F +L + ++ WN +I+ +V + +A+DL + V
Sbjct: 250 --------NTSCDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHG 301
Query: 284 VKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSR 332
V+P+ V+I SVLPAC L+A G +V NALIDMY +CG ++++R
Sbjct: 302 VEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEAR 361
Query: 333 KIFVLMPHKNLVSWNVMISVYG 354
+F M +++VSW MIS YG
Sbjct: 362 AVFDQMMFRDVVSWTSMISAYG 383
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 108/267 (40%), Gaps = 55/267 (20%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W M+ +Y E V+L+ M GV PD V AC +L +G+ +++Y+
Sbjct: 273 SWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYV 332
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
K N L+ N+LID YAKC LK +
Sbjct: 333 ERKKLRPN------------------------------LLLENALIDMYAKCGCLKEARA 362
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +D+VSW +M++ Y + G ++ L +M + P+ I+ VLAAC+
Sbjct: 363 VFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMR--DSGFTPDWIAFVSVLAACSHA 420
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V G+ + + I T + +N ++ R+G++ +
Sbjct: 421 GLVDEGRYCFNLMAEYGI--------------------TPGIEHYNCMVDLLGRAGKIDE 460
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPAC 298
A L R + ++PN S+L AC
Sbjct: 461 AYHLTRQM---PMEPNERVWGSLLSAC 484
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 69/133 (51%), Gaps = 11/133 (8%)
Query: 233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
ACG + +F++++ ++VV +N +I ++V +G DAL + + + P+ T
Sbjct: 82 AACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPDNYTYP 141
Query: 293 SVLPAC-----------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK 341
VL AC + A + GL ++ N L+ MYG+C + +R++ MP +
Sbjct: 142 CVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGR 201
Query: 342 NLVSWNVMISVYG 354
++VSWN M++ Y
Sbjct: 202 DMVSWNSMVAGYA 214
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 8/117 (6%)
Query: 14 CGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYK 73
C E A + +WTSM+ Y + G ++ V LF M D G PD V
Sbjct: 356 CLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLA 415
Query: 74 ACSELKDYRVGKDVY----DYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126
ACS G+ + +Y I+ E C ++DL + G+++ L +M
Sbjct: 416 ACSHAGLVDEGRYCFNLMAEYGITPGIEHYNC----MVDLLGRAGKIDEAYHLTRQM 468
>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Glycine max]
Length = 813
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 99/345 (28%), Positives = 164/345 (47%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W ++ Y G+ +E LF MI GV+PD + E R K+V+ Y+
Sbjct: 281 TWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYI 340
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + + +K L+D++ K G +E+ +F++ N L+D V+ C
Sbjct: 341 VRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQ--------NILVD---------VAVC 383
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
AM++GY L G + N +IQ M N+++++ VL ACA V
Sbjct: 384 -------------TAMISGYVLHGLNIDAINTF--RWLIQEGMVTNSLTMASVLPACAAV 428
Query: 212 KGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+K GK +H ++L+ + + CG + + F ++S RD V WNS+I
Sbjct: 429 AALKPGKELHCHILKKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMI 488
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
S+F ++G+ A+DL R + ++ K ++V++ S L A L AL G
Sbjct: 489 SSFSQNGKPEIAIDLFRQMGMSGAKFDSVSLSSALSAAANLPALYYGKEMHGYVIRNAFS 548
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ +FV + LIDMY +CG + + +F LM KN VSWN +I+ YG
Sbjct: 549 SDTFVASTLIDMYSKCGNLALAWCVFNLMDGKNEVSWNSIIAAYG 593
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 105/415 (25%), Positives = 178/415 (42%), Gaps = 97/415 (23%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
NW + G+Y +LG+++ + ++ M+ V PD + P V KAC L + + V+D
Sbjct: 81 NWM-IRGLY-MLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMVVHDTA 138
Query: 92 ISIKFE-----GNACVK-----------------RPLLDL---------FIKCGRMEITS 120
S+ F G+A +K PL D ++K G +
Sbjct: 139 RSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGDFDNAI 198
Query: 121 GLFEEMDQDFLVNNSL----------------------------------------IDFY 140
G F EM + + NS+ + Y
Sbjct: 199 GTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQVANTLVAMY 258
Query: 141 AKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTIS 200
+KC L + F+ + Q D V+WN ++AGY GF +E L + MI ++P++++
Sbjct: 259 SKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFN--AMISAGVKPDSVT 316
Query: 201 LSGVLAACAQVKGVKLGKAIHGYVLRHH----IHLSTAC-------GFVICSCSVFNQLS 249
+ L + + ++ K +H Y++RH ++L +A G V + +F Q
Sbjct: 317 FASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQNI 376
Query: 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-- 307
DV V ++IS +V G +DA++ R +I + N++T+ SVLPAC +AAL G
Sbjct: 377 LVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKE 436
Query: 308 ---------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L V +A+ DMY +CG + + + F M ++ V WN MIS +
Sbjct: 437 LHCHILKKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMISSF 491
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 156/329 (47%), Gaps = 55/329 (16%)
Query: 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS 93
T+M+ Y + G + +N F +I +G+ + V AC+ + + GK+++ +++
Sbjct: 384 TAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKELHCHILK 443
Query: 94 IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKF 153
+ E I + V +++ D YAKC L +++ F
Sbjct: 444 KRLE-------------------NIVN-----------VGSAITDMYAKCGRLDLAYEFF 473
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG 213
++ +D V WN+M++ ++ G E +L +M M + + +++SLS L+A A +
Sbjct: 474 RRMSDRDSVCWNSMISSFSQNGKPEIAIDLFRQMGM--SGAKFDSVSLSSALSAAANLPA 531
Query: 214 VKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISA 262
+ GK +HGYV+R+ I + + CG + + VFN + ++ V WNSII+A
Sbjct: 532 LYYGKEMHGYVIRNAFSSDTFVASTLIDMYSKCGNLALAWCVFNLMDGKNEVSWNSIIAA 591
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL----------GTGS 312
+ G + LDL +++ A + P+ VT + ++ AC + +G+ G G+
Sbjct: 592 YGNHGCPRECLDLYHEMLRAGIHPDHVTFLVIISACGHAGLVDEGIHYFHCMTREYGIGA 651
Query: 313 FV--WNALIDMYGRCGAIQKSRKIFVLMP 339
+ + ++D+YGR G + ++ MP
Sbjct: 652 RMEHYACMVDLYGRAGRVHEAFDTIKSMP 680
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 132/308 (42%), Gaps = 58/308 (18%)
Query: 70 KVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP-LLDLFIKCGRMEITSGLFEEMDQ 128
+++ACS+ + + V+ +I + G+ C +L L++ CGR LF E++
Sbjct: 16 SLFRACSDASMVQQARQVHTQVI-VGGMGDVCAPSSRVLGLYVLCGRFRDAGNLFFELE- 73
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAG-YALGGFREEVTNLLDEM 187
RY + WN M+ G Y LG F LL
Sbjct: 74 --------------LRYA---------------LPWNWMIRGLYMLGWFDFA---LLFYF 101
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV--LRHHIHLSTAC---------G 236
+M+ +++ P+ + V+ AC + V L +H L H+ L G
Sbjct: 102 KMLGSNVSPDKYTFPYVIKACGGLNNVPLCMVVHDTARSLGFHVDLFAGSALIKLYADNG 161
Query: 237 FVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296
++ + VF++L RD ++WN ++ +V+SG +A+ ++ + N+VT +L
Sbjct: 162 YIRDARRVFDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILS 221
Query: 297 ACLKLAALPQG-------LGTG----SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
C G +G+G V N L+ MY +CG + +RK+F MP + V+
Sbjct: 222 ICATRGNFCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVT 281
Query: 346 WNVMISVY 353
WN +I+ Y
Sbjct: 282 WNGLIAGY 289
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 22/178 (12%)
Query: 198 TISLSGVLAACAQVKGVKLGKAIHGYVL-----------RHHIHLSTACGFVICSCSVFN 246
T L + AC+ V+ + +H V+ + L CG + ++F
Sbjct: 11 TTQLESLFRACSDASMVQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRDAGNLFF 70
Query: 247 QLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ 306
+L R + WN +I G AL ++ +NV P+ T V+ AC L +P
Sbjct: 71 ELELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPL 130
Query: 307 -----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G F +ALI +Y G I+ +R++F +P ++ + WNVM+ Y
Sbjct: 131 CMVVHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGY 188
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 76/185 (41%), Gaps = 32/185 (17%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W SM+ ++ G E ++LF M G + D A + L GK+++ Y+I
Sbjct: 484 WNSMISSFSQNGKPEIAIDLFRQMGMSGAKFDSVSLSSALSAAANLPALYYGKEMHGYVI 543
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F + V L+D++ KCG L ++ C
Sbjct: 544 RNAFSSDTFVASTLIDMYSKCGN------------------------------LALAWCV 573
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+ + K+ VSWN+++A Y G E +L EM++ + P+ ++ +++AC
Sbjct: 574 FNLMDGKNEVSWNSIIAAYGNHGCPRECLDLYH--EMLRAGIHPDHVTFLVIISACGHAG 631
Query: 213 GVKLG 217
V G
Sbjct: 632 LVDEG 636
>gi|222622633|gb|EEE56765.1| hypothetical protein OsJ_06312 [Oryza sativa Japonica Group]
Length = 836
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/340 (27%), Positives = 156/340 (45%), Gaps = 64/340 (18%)
Query: 44 GYYEEIVNLFYLMIDKGVR---PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G Y ++ +LF M+ GV P V C++L+ R G+ ++ Y+I E
Sbjct: 39 GLYNDVFHLFRAMLASGVDESMPTAVTVAVVLPVCAKLRVLRAGRSIHGYVIKTGLEF-- 96
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCR---YLKVSHCKFSKIK 157
D L N+L+ YAKC + +H FS I
Sbjct: 97 ----------------------------DTLSGNALVSMYAKCGGSIAMDDAHLAFSTIC 128
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK-GVKL 216
KD+VSWN+++AGY+ G EE L +M I + PN +L+ VL C+ V+ G
Sbjct: 129 CKDVVSWNSIIAGYSENGLFEEALALFGQM--ISEECLPNYSTLANVLPFCSLVEYGRHY 186
Query: 217 GKAIHGYVLRHHI------------HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
GK IHG+V+RH + H S C S+F D+V WN++I+ +V
Sbjct: 187 GKEIHGFVVRHGLEMDISVSNALMAHYSKVCEMRAVE-SIFRSSKMGDIVTWNTVIAGYV 245
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW--------- 315
+ AL L + ++ A + P++V+++S+L AC ++ L G+ +++
Sbjct: 246 MNRYPSRALKLFQGLLFAGMAPDSVSLISLLTACAQVGNLRVGIRVHGYIFRHPELLQET 305
Query: 316 ---NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
NAL+ Y +C + + F+ + +K+ VSWN ++S
Sbjct: 306 SLMNALVSFYSQCDRFDAAFRSFITIQNKDSVSWNAILSA 345
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 92/401 (22%), Positives = 171/401 (42%), Gaps = 80/401 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC------------------------NWTSM 36
+ G +H ++I G+E G+ L+ ++ +W S+
Sbjct: 79 LRAGRSIHGYVIKTGLEFDTLSGNALVSMYAKCGGSIAMDDAHLAFSTICCKDVVSWNSI 138
Query: 37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYR-VGKDVYDYMISIK 95
+ Y+ G +EE + LF MI + P++ V CS ++ R GK+++ +++
Sbjct: 139 IAGYSENGLFEEALALFGQMISEECLPNYSTLANVLPFCSLVEYGRHYGKEIHGFVVRHG 198
Query: 96 FEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSK 155
E D V+N+L+ Y+K ++ F
Sbjct: 199 LE------------------------------MDISVSNALMAHYSKVCEMRAVESIFRS 228
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
K D+V+WN ++AGY + + L ++ M P+++SL +L ACAQV ++
Sbjct: 229 SKMGDIVTWNTVIAGYVMNRYPSRALKLFQ--GLLFAGMAPDSVSLISLLTACAQVGNLR 286
Query: 216 LGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAF 263
+G +HGY+ RH + + C + F + +D V WN+I+SA
Sbjct: 287 VGIRVHGYIFRHPELLQETSLMNALVSFYSQCDRFDAAFRSFITIQNKDSVSWNAILSAC 346
Query: 264 VRSGQVVDA-LDLLRDVIVANVKPNTVTIVSVLPAC----LKLAALPQGLG-----TG-S 312
S ++ LL ++ + ++VTI++++ +K+ G TG S
Sbjct: 347 ANSEHHIEQFFRLLGEMWHDVTQWDSVTILNIIRMSTFCGIKMVQESHGYSLRVGYTGDS 406
Query: 313 FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V NA++D Y +CG + + +F + +N+V+ N MIS Y
Sbjct: 407 SVANAILDAYAKCGYLHDAETLFRSLAGRNIVTGNTMISCY 447
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 142/293 (48%), Gaps = 26/293 (8%)
Query: 85 KDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKC 143
++ + Y + + + G++ V +LD + KCG + LF + ++ + N++I Y K
Sbjct: 391 QESHGYSLRVGYTGDSSVANAILDAYAKCGYLHDAETLFRSLAGRNIVTGNTMISCYLKN 450
Query: 144 RYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSG 203
++ + F+ + +KDL +WN M YA ++ L +++ + P+TIS++
Sbjct: 451 NCVEDAEMTFNHMAEKDLTTWNLMSRLYAQNDLCDQAFCLFHQLQ--SEGLNPDTISITN 508
Query: 204 VLAACAQVKGVKLGKAIHGYVLR---HHIHLSTA-------CGFVICSCSVFNQLSTRDV 253
+L+AC + V+L K HGY+LR IHL A CG + + ++F +D+
Sbjct: 509 ILSACIHLSSVQLVKQCHGYMLRASLEDIHLEGALLDAYSKCGNIANAYNLFQVSLHKDL 568
Query: 254 VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF 313
V++ ++I A+ G A++L ++ ++KP+ V + ++L AC + G+
Sbjct: 569 VIFTAMIGAYAMHGMAEKAVELFSKMLTLDIKPDHVVLTALLSACSHAGLVDAGIKIFKS 628
Query: 314 VWN------------ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ ++D+ R G +Q + + MP ++V+ N S+ G
Sbjct: 629 IREIYGVEPTEEHCACMVDLLARSGRLQDAYSFALDMP-PHVVNANAWGSLLG 680
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 84/376 (22%), Positives = 160/376 (42%), Gaps = 85/376 (22%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +++ Y + Y + LF ++ G+ PD + AC+++ + RVG V+ Y+
Sbjct: 236 TWNTVIAGYVMNRYPSRALKLFQGLLFAGMAPDSVSLISLLTACAQVGNLRVGIRVHGYI 295
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ P E+ Q+ + N+L+ FY++C +
Sbjct: 296 F----------RHP-------------------ELLQETSLMNALVSFYSQCDRFDAAFR 326
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFR-EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F I+ KD VSWNA+L+ A E+ LL EM T Q +++++ ++ +
Sbjct: 327 SFITIQNKDSVSWNAILSACANSEHHIEQFFRLLGEMWHDVT--QWDSVTILNIIRM-ST 383
Query: 211 VKGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
G+K+ + HGY LR + CG++ + ++F L+ R++V N++
Sbjct: 384 FCGIKMVQESHGYSLRVGYTGDSSVANAILDAYAKCGYLHDAETLFRSLAGRNIVTGNTM 443
Query: 260 ISAFVRSGQVVDA--------------LDLLRDVIVAN-----------------VKPNT 288
IS ++++ V DA +L+ + N + P+T
Sbjct: 444 ISCYLKNNCVEDAEMTFNHMAEKDLTTWNLMSRLYAQNDLCDQAFCLFHQLQSEGLNPDT 503
Query: 289 VTIVSVLPACLKLAALP----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLM 338
++I ++L AC+ L+++ + + AL+D Y +CG I + +F +
Sbjct: 504 ISITNILSACIHLSSVQLVKQCHGYMLRASLEDIHLEGALLDAYSKCGNIANAYNLFQVS 563
Query: 339 PHKNLVSWNVMISVYG 354
HK+LV + MI Y
Sbjct: 564 LHKDLVIFTAMIGAYA 579
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 110/244 (45%), Gaps = 27/244 (11%)
Query: 137 IDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ- 195
+D Y + L +H F ++ D V N ++ + G +V +L M D
Sbjct: 1 MDMYGRIGSLADAHTVFDEMSCSDAVCRNILITASSRAGLYNDVFHLFRAMLASGVDESM 60
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACG------FVICSCSV----- 244
P ++++ VL CA+++ ++ G++IHGYV++ + T G + C S+
Sbjct: 61 PTAVTVAVVLPVCAKLRVLRAGRSIHGYVIKTGLEFDTLSGNALVSMYAKCGGSIAMDDA 120
Query: 245 ---FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
F+ + +DVV WNSII+ + +G +AL L +I PN T+ +VLP C +
Sbjct: 121 HLAFSTICCKDVVSWNSIIAGYSENGLFEEALALFGQMISEECLPNYSTLANVLPFCSLV 180
Query: 302 A------------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
+ GL V NAL+ Y + ++ IF ++V+WN +
Sbjct: 181 EYGRHYGKEIHGFVVRHGLEMDISVSNALMAHYSKVCEMRAVESIFRSSKMGDIVTWNTV 240
Query: 350 ISVY 353
I+ Y
Sbjct: 241 IAGY 244
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 37/193 (19%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W M +Y ++ LF+ + +G+ PD + AC L ++ K + YM
Sbjct: 470 TWNLMSRLYAQNDLCDQAFCLFHQLQSEGLNPDTISITNILSACIHLSSVQLVKQCHGYM 529
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ E + ++ LLD + KCG + LF+ VS
Sbjct: 530 LRASLE-DIHLEGALLDAYSKCGNIANAYNLFQ-----------------------VS-- 563
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
KDLV + AM+ YA+ G E+ L +M+ D++P+ + L+ +L+AC+
Sbjct: 564 -----LHKDLVIFTAMIGAYAMHGMAEKAVELFS--KMLTLDIKPDHVVLTALLSACSHA 616
Query: 212 ----KGVKLGKAI 220
G+K+ K+I
Sbjct: 617 GLVDAGIKIFKSI 629
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 9/117 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD--- 89
+T+M+G Y + G E+ V LF M+ ++PDH V + ACS G ++
Sbjct: 571 FTAMIGAYAMHGMAEKAVELFSKMLTLDIKPDHVVLTALLSACSHAGLVDAGIKIFKSIR 630
Query: 90 --YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCR 144
Y + E AC ++DL + GR++ +M + N+ C+
Sbjct: 631 EIYGVEPTEEHCAC----MVDLLARSGRLQDAYSFALDMPPHVVNANAWGSLLGACK 683
>gi|115445617|ref|NP_001046588.1| Os02g0290000 [Oryza sativa Japonica Group]
gi|47847947|dbj|BAD21737.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536119|dbj|BAF08502.1| Os02g0290000 [Oryza sativa Japonica Group]
Length = 930
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/340 (27%), Positives = 156/340 (45%), Gaps = 64/340 (18%)
Query: 44 GYYEEIVNLFYLMIDKGVR---PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G Y ++ +LF M+ GV P V C++L+ R G+ ++ Y+I E
Sbjct: 174 GLYNDVFHLFRAMLASGVDESMPTAVTVAVVLPVCAKLRVLRAGRSIHGYVIKTGLE--- 230
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCR---YLKVSHCKFSKIK 157
D L N+L+ YAKC + +H FS I
Sbjct: 231 ---------------------------FDTLSGNALVSMYAKCGGSIAMDDAHLAFSTIC 263
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK-GVKL 216
KD+VSWN+++AGY+ G EE L +M I + PN +L+ VL C+ V+ G
Sbjct: 264 CKDVVSWNSIIAGYSENGLFEEALALFGQM--ISEECLPNYSTLANVLPFCSLVEYGRHY 321
Query: 217 GKAIHGYVLRHHI------------HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
GK IHG+V+RH + H S C S+F D+V WN++I+ +V
Sbjct: 322 GKEIHGFVVRHGLEMDISVSNALMAHYSKVCEMRAVE-SIFRSSKMGDIVTWNTVIAGYV 380
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW--------- 315
+ AL L + ++ A + P++V+++S+L AC ++ L G+ +++
Sbjct: 381 MNRYPSRALKLFQGLLFAGMAPDSVSLISLLTACAQVGNLRVGIRVHGYIFRHPELLQET 440
Query: 316 ---NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
NAL+ Y +C + + F+ + +K+ VSWN ++S
Sbjct: 441 SLMNALVSFYSQCDRFDAAFRSFITIQNKDSVSWNAILSA 480
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 92/401 (22%), Positives = 171/401 (42%), Gaps = 80/401 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC------------------------NWTSM 36
+ G +H ++I G+E G+ L+ ++ +W S+
Sbjct: 214 LRAGRSIHGYVIKTGLEFDTLSGNALVSMYAKCGGSIAMDDAHLAFSTICCKDVVSWNSI 273
Query: 37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYR-VGKDVYDYMISIK 95
+ Y+ G +EE + LF MI + P++ V CS ++ R GK+++ +++
Sbjct: 274 IAGYSENGLFEEALALFGQMISEECLPNYSTLANVLPFCSLVEYGRHYGKEIHGFVVRHG 333
Query: 96 FEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSK 155
E D V+N+L+ Y+K ++ F
Sbjct: 334 LE------------------------------MDISVSNALMAHYSKVCEMRAVESIFRS 363
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
K D+V+WN ++AGY + + L ++ M P+++SL +L ACAQV ++
Sbjct: 364 SKMGDIVTWNTVIAGYVMNRYPSRALKLFQ--GLLFAGMAPDSVSLISLLTACAQVGNLR 421
Query: 216 LGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAF 263
+G +HGY+ RH + + C + F + +D V WN+I+SA
Sbjct: 422 VGIRVHGYIFRHPELLQETSLMNALVSFYSQCDRFDAAFRSFITIQNKDSVSWNAILSAC 481
Query: 264 VRSGQVVDA-LDLLRDVIVANVKPNTVTIVSVLPAC----LKLAALPQGLG-----TG-S 312
S ++ LL ++ + ++VTI++++ +K+ G TG S
Sbjct: 482 ANSEHHIEQFFRLLGEMWHDVTQWDSVTILNIIRMSTFCGIKMVQESHGYSLRVGYTGDS 541
Query: 313 FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V NA++D Y +CG + + +F + +N+V+ N MIS Y
Sbjct: 542 SVANAILDAYAKCGYLHDAETLFRSLAGRNIVTGNTMISCY 582
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 142/293 (48%), Gaps = 26/293 (8%)
Query: 85 KDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKC 143
++ + Y + + + G++ V +LD + KCG + LF + ++ + N++I Y K
Sbjct: 526 QESHGYSLRVGYTGDSSVANAILDAYAKCGYLHDAETLFRSLAGRNIVTGNTMISCYLKN 585
Query: 144 RYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSG 203
++ + F+ + +KDL +WN M YA ++ L +++ + P+TIS++
Sbjct: 586 NCVEDAEMTFNHMAEKDLTTWNLMSRLYAQNDLCDQAFCLFHQLQ--SEGLNPDTISITN 643
Query: 204 VLAACAQVKGVKLGKAIHGYVLR---HHIHLSTA-------CGFVICSCSVFNQLSTRDV 253
+L+AC + V+L K HGY+LR IHL A CG + + ++F +D+
Sbjct: 644 ILSACIHLSSVQLVKQCHGYMLRASLEDIHLEGALLDAYSKCGNIANAYNLFQVSLHKDL 703
Query: 254 VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF 313
V++ ++I A+ G A++L ++ ++KP+ V + ++L AC + G+
Sbjct: 704 VIFTAMIGAYAMHGMAEKAVELFSKMLTLDIKPDHVVLTALLSACSHAGLVDAGIKIFKS 763
Query: 314 VWN------------ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ ++D+ R G +Q + + MP ++V+ N S+ G
Sbjct: 764 IREIYGVEPTEEHCACMVDLLARSGRLQDAYSFALDMP-PHVVNANAWGSLLG 815
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 140/331 (42%), Gaps = 53/331 (16%)
Query: 50 VNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDL 109
+L M+ +G+RP+ K+ S L D R G A + R L L
Sbjct: 75 TSLLRWMLARGLRPNRLALAAAVKSSSALPDCR---------------GGAALGRCLHGL 119
Query: 110 FIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLA 169
+K G + +V +++D Y + L +H F ++ D V N ++
Sbjct: 120 AVKVGYAD-----------GAVVAKAVMDMYGRIGSLADAHTVFDEMSCSDAVCRNILIT 168
Query: 170 GYALGGFREEVTNLLDEMEMIQTDMQ-PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH 228
+ G +V +L M D P ++++ VL CA+++ ++ G++IHGYV++
Sbjct: 169 ASSRAGLYNDVFHLFRAMLASGVDESMPTAVTVAVVLPVCAKLRVLRAGRSIHGYVIKTG 228
Query: 229 IHLSTACG------FVICSCSV--------FNQLSTRDVVVWNSIISAFVRSGQVVDALD 274
+ T G + C S+ F+ + +DVV WNSII+ + +G +AL
Sbjct: 229 LEFDTLSGNALVSMYAKCGGSIAMDDAHLAFSTICCKDVVSWNSIIAGYSENGLFEEALA 288
Query: 275 LLRDVIVANVKPNTVTIVSVLPAC------------LKLAALPQGLGTGSFVWNALIDMY 322
L +I PN T+ +VLP C + + GL V NAL+ Y
Sbjct: 289 LFGQMISEECLPNYSTLANVLPFCSLVEYGRHYGKEIHGFVVRHGLEMDISVSNALMAHY 348
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ ++ IF ++V+WN +I+ Y
Sbjct: 349 SKVCEMRAVESIFRSSKMGDIVTWNTVIAGY 379
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 84/376 (22%), Positives = 160/376 (42%), Gaps = 85/376 (22%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +++ Y + Y + LF ++ G+ PD + AC+++ + RVG V+ Y+
Sbjct: 371 TWNTVIAGYVMNRYPSRALKLFQGLLFAGMAPDSVSLISLLTACAQVGNLRVGIRVHGYI 430
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ P E+ Q+ + N+L+ FY++C +
Sbjct: 431 F----------RHP-------------------ELLQETSLMNALVSFYSQCDRFDAAFR 461
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFR-EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F I+ KD VSWNA+L+ A E+ LL EM T Q +++++ ++ +
Sbjct: 462 SFITIQNKDSVSWNAILSACANSEHHIEQFFRLLGEMWHDVT--QWDSVTILNIIRM-ST 518
Query: 211 VKGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
G+K+ + HGY LR + CG++ + ++F L+ R++V N++
Sbjct: 519 FCGIKMVQESHGYSLRVGYTGDSSVANAILDAYAKCGYLHDAETLFRSLAGRNIVTGNTM 578
Query: 260 ISAFVRSGQVVDA--------------LDLLRDVIVAN-----------------VKPNT 288
IS ++++ V DA +L+ + N + P+T
Sbjct: 579 ISCYLKNNCVEDAEMTFNHMAEKDLTTWNLMSRLYAQNDLCDQAFCLFHQLQSEGLNPDT 638
Query: 289 VTIVSVLPACLKLAALP----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLM 338
++I ++L AC+ L+++ + + AL+D Y +CG I + +F +
Sbjct: 639 ISITNILSACIHLSSVQLVKQCHGYMLRASLEDIHLEGALLDAYSKCGNIANAYNLFQVS 698
Query: 339 PHKNLVSWNVMISVYG 354
HK+LV + MI Y
Sbjct: 699 LHKDLVIFTAMIGAYA 714
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 105/230 (45%), Gaps = 42/230 (18%)
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK----GVK 215
D + +A+L A+GG T+LL M+ ++PN ++L+ + + + + G
Sbjct: 54 DRMRCSALLRERAVGGDHYGCTSLL--RWMLARGLRPNRLALAAAVKSSSALPDCRGGAA 111
Query: 216 LGKAIHGYVLRHHIHLSTACGFVICSC---------------SVFNQLSTRDVVVWNSII 260
LG+ +HG ++ + A G V+ +VF+++S D V N +I
Sbjct: 112 LGRCLHGLAVK----VGYADGAVVAKAVMDMYGRIGSLADAHTVFDEMSCSDAVCRNILI 167
Query: 261 SAFVRSGQVVDALDLLRDVIVANVK---PNTVTIVSVLPACLKLAALPQGLGTGSFV--- 314
+A R+G D L R ++ + V P VT+ VLP C KL L G +V
Sbjct: 168 TASSRAGLYNDVFHLFRAMLASGVDESMPTAVTVAVVLPVCAKLRVLRAGRSIHGYVIKT 227
Query: 315 --------WNALIDMYGRCG---AIQKSRKIFVLMPHKNLVSWNVMISVY 353
NAL+ MY +CG A+ + F + K++VSWN +I+ Y
Sbjct: 228 GLEFDTLSGNALVSMYAKCGGSIAMDDAHLAFSTICCKDVVSWNSIIAGY 277
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 37/193 (19%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W M +Y ++ LF+ + +G+ PD + AC L ++ K + YM
Sbjct: 605 TWNLMSRLYAQNDLCDQAFCLFHQLQSEGLNPDTISITNILSACIHLSSVQLVKQCHGYM 664
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ E + ++ LLD + KCG + LF+ VS
Sbjct: 665 LRASLE-DIHLEGALLDAYSKCGNIANAYNLFQ-----------------------VS-- 698
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
KDLV + AM+ YA+ G E+ L +M+ D++P+ + L+ +L+AC+
Sbjct: 699 -----LHKDLVIFTAMIGAYAMHGMAEKAVELFS--KMLTLDIKPDHVVLTALLSACSHA 751
Query: 212 ----KGVKLGKAI 220
G+K+ K+I
Sbjct: 752 GLVDAGIKIFKSI 764
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 9/117 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD--- 89
+T+M+G Y + G E+ V LF M+ ++PDH V + ACS G ++
Sbjct: 706 FTAMIGAYAMHGMAEKAVELFSKMLTLDIKPDHVVLTALLSACSHAGLVDAGIKIFKSIR 765
Query: 90 --YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCR 144
Y + E AC ++DL + GR++ +M + N+ C+
Sbjct: 766 EIYGVEPTEEHCAC----MVDLLARSGRLQDAYSFALDMPPHVVNANAWGSLLGACK 818
>gi|302799483|ref|XP_002981500.1| hypothetical protein SELMODRAFT_10313 [Selaginella moellendorffii]
gi|300150666|gb|EFJ17315.1| hypothetical protein SELMODRAFT_10313 [Selaginella moellendorffii]
Length = 296
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 133/257 (51%), Gaps = 29/257 (11%)
Query: 122 LFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKI--KQKDLVSWNAMLAGYALGGFREE 179
F ++ + V +L++ YAKC ++ + F ++ K KD+VSW+ ++A Y G E
Sbjct: 5 FFPDLRKSVFVGTALLNMYAKCGAIEQARAVFDQLTHKDKDVVSWSCIIAAYVQSGHCRE 64
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL----RHHIHLSTA- 234
NL M D++PN + + LAAC+ K + LG AIH +L R + + TA
Sbjct: 65 AINLFQRM-----DVKPNEMVIVSTLAACSGAKDLVLGMAIHARILSPDLRKSVFVGTAL 119
Query: 235 ------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288
CG + + +VF+Q+ +DVV W ++I+AF + G AL+ L +I A +PN
Sbjct: 120 LNMYAKCGAIEQARAVFDQIPHKDVVSWTAMITAFAQRGDCGQALETLEGMIQARFQPNP 179
Query: 289 VTIVSVLPACLKLAALPQG---------LGTGSF--VWNALIDMYGRCGAIQKSRKIFVL 337
VT V+ + AC L +G LG + + NAL+ MY + G +++ +F
Sbjct: 180 VTFVAEITACSSREFLDRGRKIHAAVIDLGLHGYITIQNALVSMYAKGGNAEEALSVFQR 239
Query: 338 MPHKNLVSWNVMISVYG 354
M +N VSWN MI+ +
Sbjct: 240 MEDRNRVSWNSMIAAFA 256
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 124/279 (44%), Gaps = 48/279 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W+ ++ Y G+ E +NLF M V+P+ V ACS KD +G ++ +
Sbjct: 48 SWSCIIAAYVQSGHCREAINLFQRM---DVKPNEMVIVSTLAACSGAKDLVLGMAIHARI 104
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+S ++ + V +L++ YAKC ++ +
Sbjct: 105 LS------------------------------PDLRKSVFVGTALLNMYAKCGAIEQARA 134
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME-MIQTDMQPNTISLSGVLAACAQ 210
F +I KD+VSW AM+ +A R + L+ +E MIQ QPN ++ + AC+
Sbjct: 135 VFDQIPHKDVVSWTAMITAFAQ---RGDCGQALETLEGMIQARFQPNPVTFVAEITACSS 191
Query: 211 VKGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ + G+ IH V+ +H + G + SVF ++ R+ V WNS+
Sbjct: 192 REFLDRGRKIHAAVIDLGLHGYITIQNALVSMYAKGGNAEEALSVFQRMEDRNRVSWNSM 251
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
I+AF S Q + L + + +KP+ V+ + VL AC
Sbjct: 252 IAAFAASAQSCAVMGLFHGMNLEGIKPDDVSFLGVLSAC 290
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/230 (19%), Positives = 87/230 (37%), Gaps = 53/230 (23%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYN 41
LG+ +HA ++ + F+G+ LL ++ +WT+M+ +
Sbjct: 96 LGMAIHARILSPDLRKSVFVGTALLNMYAKCGAIEQARAVFDQIPHKDVVSWTAMITAFA 155
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G + + MI +P+ ACS + G+ ++ +I + G
Sbjct: 156 QRGDCGQALETLEGMIQARFQPNPVTFVAEITACSSREFLDRGRKIHAAVIDLGLHGYIT 215
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
++ L+ ++ K G E +F+ M+ ++
Sbjct: 216 IQNALVSMYAKGGNAEEALSVFQRME------------------------------DRNR 245
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
VSWN+M+A +A V L M + ++P+ +S GVL+AC+
Sbjct: 246 VSWNSMIAAFAASAQSCAVMGLFHGMNL--EGIKPDDVSFLGVLSACSST 293
>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
Length = 842
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 98/398 (24%), Positives = 182/398 (45%), Gaps = 47/398 (11%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF--CNW-------------------TSMMGM 39
+E G +V+A + G+E+ + S L++++ CN +M
Sbjct: 252 LETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASN 311
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G E + +F LM+D GVRPD +CS+L++ GK + Y++ FE
Sbjct: 312 YVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESW 371
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKIKQ 158
+ L+D+++KC R + +F+ M +V NS++ Y + + + F + +
Sbjct: 372 DNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPE 431
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
K++VSWN +++G G EE + M+ Q + + +++ + +AC + + L K
Sbjct: 432 KNIVSWNTIISGLVQGSLFEEAIEVFCSMQS-QEGVNADGVTMMSIASACGHLGALDLAK 490
Query: 219 AIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
I+ Y+ ++ I L + CG + S+FN L+ RDV W + I A +G
Sbjct: 491 WIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAG 550
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GLGTGSFVW 315
A++L D+I +KP+ V V L AC + Q G+ +
Sbjct: 551 NAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHY 610
Query: 316 NALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
++D+ GR G ++++ ++ MP N V WN +++
Sbjct: 611 GCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAA 648
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/343 (21%), Positives = 164/343 (47%), Gaps = 53/343 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
+ S++ Y G E + LF M++ G+ PD + P AC++ + G ++ ++
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ + +D V NSL+ FYA+C L +
Sbjct: 162 KMGYA------------------------------KDLFVQNSLVHFYAECGELDSARKV 191
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ ++++VSW +M+ GYA F ++ +L M + ++ PN++++ V++ACA+++
Sbjct: 192 FDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRM-VRDEEVTPNSVTMVCVISACAKLE 250
Query: 213 GVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ G+ ++ ++ I ++ C + + +F++ ++ + N++ S
Sbjct: 251 DLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMAS 310
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGT 310
+VR G +AL + ++ + V+P+ ++++S + +C +L L G +
Sbjct: 311 NYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFES 370
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ NALIDMY +C + +IF M +K +V+WN +++ Y
Sbjct: 371 WDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGY 413
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 93/419 (22%), Positives = 174/419 (41%), Gaps = 108/419 (25%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
GIQ+H ++ G F+ + L+ + +WTSM+ Y
Sbjct: 153 GIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYAR 212
Query: 43 LGYYEEIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+ ++ V+LF+ M+ D+ V P+ V AC++L+D G+ VY ++ + E N
Sbjct: 213 RDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDL 272
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ L+D+++KC +++ LF+E L DL
Sbjct: 273 MVSALVDMYMKCNAIDVAKRLFDEYGASNL----------------------------DL 304
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
NAM + Y G E + + M+ + ++P+ IS+ +++C+Q++ + GK+ H
Sbjct: 305 C--NAMASNYVRQGLTREALGVFN--LMMDSGVRPDRISMLSAISSCSQLRNILWGKSCH 360
Query: 222 GYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
GYVLR+ I + C + +F+++S + VV WNSI++ +V +G+V
Sbjct: 361 GYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVD 420
Query: 271 DALDLLRDVIVAN--------------------------------VKPNTVTIVSVLPAC 298
A + + N V + VT++S+ AC
Sbjct: 421 AAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASAC 480
Query: 299 LKLAAL-----------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
L AL G+ + L+DM+ RCG + + IF + ++++ +W
Sbjct: 481 GHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAW 539
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA----------- 303
++NS+I + SG +A+ L ++ + + P+ T L AC K A
Sbjct: 101 MYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLI 160
Query: 304 LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ G FV N+L+ Y CG + +RK+F M +N+VSW MI Y
Sbjct: 161 VKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYA 211
>gi|297796453|ref|XP_002866111.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311946|gb|EFH42370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 829
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 165/349 (47%), Gaps = 62/349 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++G+ +G E + F M++ + PD+FV P V KAC L+ R G+ V+ Y+
Sbjct: 140 SWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALQWSRFGRGVHGYV 199
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ E V L D++ KCG ++ +F+E
Sbjct: 200 VKAGLEDCVFVASSLADMYGKCGVLDDARKVFDE-------------------------- 233
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
I ++++V+WNA++ GY G EE L +M + ++P +++S L+A A +
Sbjct: 234 ----IPERNVVAWNALMVGYVQNGMNEEAIRLFSDMR--KEGVEPTRVTVSTCLSASANM 287
Query: 212 KGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSII 260
GV+ GK H + + + L G + + VF+++ +DVV WN II
Sbjct: 288 GGVEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMVFDRMIDKDVVTWNLII 347
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW----- 315
S +V+ G V +A+ + + + + +K + VT+ +++ A AA Q L G V
Sbjct: 348 SGYVQQGLVENAIYMCQLMRLEKLKYDCVTLATLMSA----AARTQNLKLGKEVQCYCIR 403
Query: 316 ----------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ ++DMY +CG+I ++K+F K+L+ WN +++ Y
Sbjct: 404 HSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTAEKDLILWNTLLAAYA 452
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 97/426 (22%), Positives = 182/426 (42%), Gaps = 87/426 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q HA IV G+EL LG+ LL +C W ++
Sbjct: 290 VEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMVFDRMIDKDVVTWNLIISG 349
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G E + + LM + ++ D + A + ++ ++GK+V Y I FE +
Sbjct: 350 YVQQGLVENAIYMCQLMRLEKLKYDCVTLATLMSAAARTQNLKLGKEVQCYCIRHSFESD 409
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKC--------------- 143
+ ++D++ KCG + +F+ ++D ++ N+L+ YA+
Sbjct: 410 IVLASTVMDMYAKCGSIVDAKKVFDSTAEKDLILWNTLLAAYAESGLSGEGLRLFYGMQL 469
Query: 144 ------------------RYLKVSHCK--FSKIKQK----DLVSWNAMLAGYALGGFREE 179
R +V K F +++ +L+SW M+ G G EE
Sbjct: 470 EGVPPNVITWNLIILSLLRNGEVDEAKDMFLQMQSSGIFPNLISWTTMMNGMVQNGCSEE 529
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA----- 234
L +M+ ++ ++PN +S++ L+ACA + + G++IHGY++R+ H S+
Sbjct: 530 AILFLRKMQ--ESGLRPNAVSITVALSACANLASLHFGRSIHGYIIRNLQHSSSVSIETS 587
Query: 235 -------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
CG + + VF ++ ++N++ISA+ G + +A+ L R + +KP+
Sbjct: 588 LVDMYAKCGDINKAEKVFGSKLYSELPLYNAMISAYALYGNLKEAIALYRSLEGVGLKPD 647
Query: 288 TVTIVSVLPACLKLAALPQ------------GLGTGSFVWNALIDMYGRCGAIQKSRKIF 335
+TI +VL AC Q G+ + ++D+ G K+ ++
Sbjct: 648 NITITNVLSACNHAGDNNQATEIVTEMVSKHGMNPCLEHYGLMVDLLASAGQTDKALRLI 707
Query: 336 VLMPHK 341
MP+K
Sbjct: 708 EEMPYK 713
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 147/305 (48%), Gaps = 44/305 (14%)
Query: 77 ELKDYRVGKDVYDYMIS-IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNS 135
+ ++ R+G ++Y ++ +E + C + + +K G DF N
Sbjct: 62 DFRNLRIGPEIYGEILQGCVYERDLCTGKQIHARILKNG--------------DFYAKNE 107
Query: 136 LID-----FYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
I+ FYAKC L ++ F+K++ +++ SW A++ G E L+ +EM+
Sbjct: 108 YIETKLVIFYAKCDALDIAEVLFTKLRVRNVFSWAAIIGVKCRIGLCEGA--LMGFVEML 165
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVI 239
+ ++ P+ + V AC ++ + G+ +HGYV++ + + CG +
Sbjct: 166 ENEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKAGLEDCVFVASSLADMYGKCGVLD 225
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ VF+++ R+VV WN+++ +V++G +A+ L D+ V+P VT+ + L A
Sbjct: 226 DARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASA 285
Query: 300 KLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
+ A+ GL + + +L++ Y + G I+ + +F M K++V+WN+
Sbjct: 286 NMGGVEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMVFDRMIDKDVVTWNL 345
Query: 349 MISVY 353
+IS Y
Sbjct: 346 IISGY 350
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/385 (21%), Positives = 160/385 (41%), Gaps = 92/385 (23%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYN 41
G VH +++ G+E C F+ S L +++ W ++M Y
Sbjct: 191 FGRGVHGYVVKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYV 250
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G EE + LF M +GV P A + + GK +
Sbjct: 251 QNGMNEEAIRLFSDMRKEGVEPTRVTVSTCLSASANMGGVEEGKQSH------------- 297
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ I +GL + D ++ SL++FY K ++ + F ++ KD+
Sbjct: 298 -------------AIAIVNGL----ELDNILGTSLLNFYCKVGLIEYAEMVFDRMIDKDV 340
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
V+WN +++GY G E + M + ++ + ++L+ +++A A+ + +KLGK +
Sbjct: 341 VTWNLIISGYVQQGLVENAIYMCQLMRL--EKLKYDCVTLATLMSAAARTQNLKLGKEVQ 398
Query: 222 GYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y +RH + + CG ++ + VF+ + +D+++WN++++A+ SG
Sbjct: 399 CYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTAEKDLILWNTLLAAYAESGLSG 458
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQK 330
+ L L + + V PN +T WN +I R G + +
Sbjct: 459 EGLRLFYGMQLEGVPPNVIT------------------------WNLIILSLLRNGEVDE 494
Query: 331 SRKIFVLMPHK----NLVSWNVMIS 351
++ +F+ M NL+SW M++
Sbjct: 495 AKDMFLQMQSSGIFPNLISWTTMMN 519
>gi|147780613|emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera]
Length = 654
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 102/388 (26%), Positives = 172/388 (44%), Gaps = 77/388 (19%)
Query: 9 AHLIVCGVELC--AFLGSQLLEVFC---------------------NWTSMMGMYNVLGY 45
AH + ++ C F+GS L+ ++C +W +M+ Y
Sbjct: 130 AHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKL 189
Query: 46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP 105
E + LF LM + + FV V A + + GK ++ C+
Sbjct: 190 AAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIH------------CIA-- 235
Query: 106 LLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWN 165
+K G + I S V N+L+ YAKC L + F K+ ++W+
Sbjct: 236 -----VKNGLLSIVS-----------VGNALVTMYAKCGSLDDALQTFETSSDKNSITWS 279
Query: 166 AMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL 225
AM+ G A G ++ L M + + ++P+ + GV+ AC+ + GK +H Y+L
Sbjct: 280 AMITGXAQSGDSDKALKLFSSMHL--SGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLL 337
Query: 226 R----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALD 274
+ I++ TA C ++ + F+ L D+V+W S+I +V++G+ DAL
Sbjct: 338 KLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALS 397
Query: 275 LLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALIDMYG 323
L + + + PN +T+ SVL AC LAAL Q G G + +AL MY
Sbjct: 398 LYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYA 457
Query: 324 RCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+CG ++ +F MP ++++SWN MIS
Sbjct: 458 KCGCLKDGTLVFRRMPARDVISWNAMIS 485
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 134/289 (46%), Gaps = 43/289 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W++M+ G ++ + LF M G+RP F V ACS+L GK V+DY+
Sbjct: 277 TWSAMITGXAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYL 336
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + FE V +L+D YAKC + +
Sbjct: 337 LKLGFESQ------------------------------IYVMTALVDMYAKCSSIVDARK 366
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +++ D+V W +M+ GY G E+ +L MEM + PN ++++ VL AC+ +
Sbjct: 367 GFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEM--EGILPNELTMASVLKACSSL 424
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACG------FVICSCS-----VFNQLSTRDVVVWNSII 260
++ GK IH +++ L G + C C VF ++ RDV+ WN++I
Sbjct: 425 AALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMI 484
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG 309
S ++G +AL+L ++ + KP+ VT V++L AC + + +G G
Sbjct: 485 SGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWG 533
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 108/244 (44%), Gaps = 26/244 (10%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGG--FREEVTNLLDEMEM 189
+ NSL++ YAKC+ L+ + F +I+ KD+VSWN ++ GY+ G V L M
Sbjct: 42 IANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRA 101
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFV 238
T PN + +GV A + + G+ H ++ +++ G
Sbjct: 102 ENT--APNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLT 159
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ VF+ + R+ V W ++IS + +AL L R + N SVL A
Sbjct: 160 PEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSAL 219
Query: 299 -----------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
+ A+ GL + V NAL+ MY +CG++ + + F KN ++W+
Sbjct: 220 TLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWS 279
Query: 348 VMIS 351
MI+
Sbjct: 280 AMIT 283
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 112/248 (45%), Gaps = 24/248 (9%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
+D V +SL++ Y K + F + +++ VSW M++GYA E L M
Sbjct: 141 RDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLM 200
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACG 236
+ + N + VL+A + V GK IH +++ + + CG
Sbjct: 201 R--REEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCG 258
Query: 237 FVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296
+ + F S ++ + W+++I+ +SG AL L + ++ ++P+ T V V+
Sbjct: 259 SLDDALQTFETSSDKNSITWSAMITGXAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVIN 318
Query: 297 ACLKLAALPQG---------LGTGS--FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
AC L A +G LG S +V AL+DMY +C +I +RK F + ++V
Sbjct: 319 ACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVL 378
Query: 346 WNVMISVY 353
W MI Y
Sbjct: 379 WTSMIGGY 386
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 23/182 (12%)
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----------IHLSTACGFVICSCSVF 245
P+ S L + ++ GKA+H +++ ++L C + + VF
Sbjct: 4 PSNRSFFTALLQYTHNRSLQKGKALHAQIIKSSSSCVYIANSLVNLYAKCQRLREAKFVF 63
Query: 246 NQLSTRDVVVWNSIISAFVRSGQVVDA--LDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
++ +DVV WN II+ + + G + ++L + + N PN T V A L
Sbjct: 64 ERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVD 123
Query: 304 LPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
G + FV ++L++MY + G ++RK+F MP +N VSW MIS
Sbjct: 124 AAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISG 183
Query: 353 YG 354
Y
Sbjct: 184 YA 185
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 160/345 (46%), Gaps = 44/345 (12%)
Query: 48 EIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPL 106
E + LF M+ D V+P+ F P V KAC+ R GK ++ ++ F + V L
Sbjct: 104 EALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNL 163
Query: 107 LDLFIKCGRMEITSGLF-----------------EEMDQDFLVNNSLIDFYAKCRYLKVS 149
+ +++ C ME LF + D + ++ N +ID + +K +
Sbjct: 164 VRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSA 223
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F ++ Q+ +VSWN M++GYA G E NL EM+ +++ PN ++L VL A A
Sbjct: 224 KNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQ--SSNIDPNYVTLVSVLPAIA 281
Query: 210 QVKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNS 258
++ ++LGK IH Y ++ I + + CG + + VF L R+ + W++
Sbjct: 282 RIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSA 341
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV---- 314
II AF G+ DA+ + A V PN V + +L AC + +G S +
Sbjct: 342 IIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVV 401
Query: 315 --------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ ++D+ GR G ++++ ++ MP + V W ++
Sbjct: 402 GLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALL 446
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 79/130 (60%), Gaps = 11/130 (8%)
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
G + + ++F+++ R VV WN +IS + ++G ++A++L +++ +N+ PN VT+VSVL
Sbjct: 218 GDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVL 277
Query: 296 PACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLV 344
PA ++ AL G + + +AL+DMY +CG+I ++ ++F +P +N +
Sbjct: 278 PAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAI 337
Query: 345 SWNVMISVYG 354
+W+ +I +
Sbjct: 338 TWSAIIGAFA 347
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 104/256 (40%), Gaps = 50/256 (19%)
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYA-KCRYLKVSHCKFSKIKQKDLV 162
+ L +FIK G++ QD L +I F A R + + F ++ + +
Sbjct: 36 KQLHAIFIKTGQI-----------QDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCF 84
Query: 163 SWNAMLAGYALGG---FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
WN +L A + E L M + ++PN + VL ACA+ ++ GK
Sbjct: 85 CWNTILRVLAETNDEHLQSEALMLFSAM-LCDGRVKPNRFTFPSVLKACARASRLREGKQ 143
Query: 220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
IHG +++ H D V ++++ +V + DA L
Sbjct: 144 IHGLIVKFGFH--------------------EDEFVISNLVRMYVMCAVMEDAYSLF--- 180
Query: 280 IVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-WNALIDMYGRCGAIQKSRKIFVLM 338
+V +C L + G+ V WN +ID R G I+ ++ +F M
Sbjct: 181 --------CKNVVDFDGSCQ--MELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEM 230
Query: 339 PHKNLVSWNVMISVYG 354
P +++VSWNVMIS Y
Sbjct: 231 PQRSVVSWNVMISGYA 246
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/290 (19%), Positives = 123/290 (42%), Gaps = 58/290 (20%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W M+ Y G++ E +NLF M + P++ V A + + +GK ++ Y
Sbjct: 237 SWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYA 296
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
K E + + L+D++ KCG ++ +FE
Sbjct: 297 GKNKIEIDDVLGSALVDMYSKCGSIDEALQVFE--------------------------- 329
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+ +++ ++W+A++ +A+ G E+ ++ M + + PN ++ G+L+AC+
Sbjct: 330 ---TLPKRNAITWSAIIGAFAMHGRAEDA--IIHFHLMGKAGVTPNDVAYIGILSACSHA 384
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V+ G++ H+ G L R + + ++ R+G + +
Sbjct: 385 GLVEEGRSFFS-------HMVKVVG-----------LQPR-IEHYGCMVDLLGRAGHLEE 425
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDM 321
A +L+R++ ++P+ V ++L AC + + L G V L+++
Sbjct: 426 AEELIRNM---PIEPDDVIWKALLGAC----KMHKNLKMGERVAETLMEL 468
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 62/152 (40%), Gaps = 30/152 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ELG +H + +E+ LGS L++++ W++++G
Sbjct: 286 LELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGA 345
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI----- 94
+ + G E+ + F+LM GV P+ + ACS G+ + +M+ +
Sbjct: 346 FAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQP 405
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126
+ E C ++DL + G +E L M
Sbjct: 406 RIEHYGC----MVDLLGRAGHLEEAEELIRNM 433
>gi|302759917|ref|XP_002963381.1| hypothetical protein SELMODRAFT_80412 [Selaginella moellendorffii]
gi|300168649|gb|EFJ35252.1| hypothetical protein SELMODRAFT_80412 [Selaginella moellendorffii]
Length = 860
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 156/342 (45%), Gaps = 55/342 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+WT+M+ Y GY + +F M+ +G V PD V ACS L D G ++
Sbjct: 198 SWTAMITAYAQNGYERRAIEVFGDMMSEGRVEPDPITYAGVLTACSTLGDLETGMRIHAL 257
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ I G ++ D ++ + ++ +A+C L +
Sbjct: 258 IHRIYTLG---------------------------LEYDDVLQDGILSLHARCGSLVGTR 290
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ + +V+W M+A Y G+ E L M D++P+ I+LS VL AC++
Sbjct: 291 EMFDRMPHRTVVTWTTMIAAYNQRGYSMEALELYHCM-----DIEPDDIALSNVLQACSR 345
Query: 211 VKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSI 259
+K ++ G+A+H + S CG + + F+ RDV+ W S+
Sbjct: 346 LKNLEQGRAVHSRIASRDFEPSLMVQTLLVDMYVKCGDLAEARRTFDGFKARDVISWTSL 405
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTG- 311
I+A+ +AL++ + + V+PN++T +V+ AC +L++L G + TG
Sbjct: 406 ITAYSHENFGREALEVFHSMELEGVEPNSITFCTVIDACSRLSSLLPGRALHSRVVATGH 465
Query: 312 ---SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
FV NAL+ MY + G + +R +F +P K SW VM+
Sbjct: 466 ISDEFVGNALVSMYSKFGRVDFARMVFDSIPVKRYPSWRVML 507
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 82/348 (23%), Positives = 153/348 (43%), Gaps = 60/348 (17%)
Query: 31 CNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
W +M+ Y +++E + F M P V AC D GK ++
Sbjct: 97 ATWNTMITAYVQHDFFQEALEAFRRM---DAPPSSITFTSVLGACCSPDDLETGKAIHRQ 153
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ G ++ D ++ NSL+ Y KC L+ +
Sbjct: 154 I----------------------------GGSSPQIQADEILQNSLVTMYGKCGSLEDAE 185
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F I++K+ SW AM+ YA G+ + +M M + ++P+ I+ +GVL AC+
Sbjct: 186 RVFHGIRRKNAFSWTAMITAYAQNGYERRAIEVFGDM-MSEGRVEPDPITYAGVLTACST 244
Query: 211 VKGVKLGKAIHGYVLRHH--------------IHLSTACGFVICSCSVFNQLSTRDVVVW 256
+ ++ G IH + R + + L CG ++ + +F+++ R VV W
Sbjct: 245 LGDLETGMRIHALIHRIYTLGLEYDDVLQDGILSLHARCGSLVGTREMFDRMPHRTVVTW 304
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS---- 312
++I+A+ + G ++AL+L +++P+ + + +VL AC +L L QG S
Sbjct: 305 TTMIAAYNQRGYSMEALELYH---CMDIEPDDIALSNVLQACSRLKNLEQGRAVHSRIAS 361
Query: 313 -------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V L+DMY +CG + ++R+ F ++++SW +I+ Y
Sbjct: 362 RDFEPSLMVQTLLVDMYVKCGDLAEARRTFDGFKARDVISWTSLITAY 409
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/346 (23%), Positives = 157/346 (45%), Gaps = 63/346 (18%)
Query: 36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIK 95
M+ Y GY+ E + L+ M ++GV P+ V AC+ LKD GK V+
Sbjct: 1 MISAYAQKGYHREALELYEEMDERGVDPNDKTFACVLSACAGLKDMERGKKVH------- 53
Query: 96 FEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSK 155
R + + + D ++ N+L++ YAKC L+ S F
Sbjct: 54 --------RRIRESVARV---------------DTVLQNALLNLYAKCGDLEESRRIFEA 90
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
++++ + +WN M+ Y F +E M D P++I+ + VL AC ++
Sbjct: 91 MERRTVATWNTMITAYVQHDFFQEALEAFRRM-----DAPPSSITFTSVLGACCSPDDLE 145
Query: 216 LGKAIH------------GYVLRHH-IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISA 262
GKAIH +L++ + + CG + + VF+ + ++ W ++I+A
Sbjct: 146 TGKAIHRQIGGSSPQIQADEILQNSLVTMYGKCGSLEDAERVFHGIRRKNAFSWTAMITA 205
Query: 263 FVRSGQVVDALDLLRDVIV-ANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------- 314
+ ++G A+++ D++ V+P+ +T VL AC L L G+ + +
Sbjct: 206 YAQNGYERRAIEVFGDMMSEGRVEPDPITYAGVLTACSTLGDLETGMRIHALIHRIYTLG 265
Query: 315 -------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ ++ ++ RCG++ +R++F MPH+ +V+W MI+ Y
Sbjct: 266 LEYDDVLQDGILSLHARCGSLVGTREMFDRMPHRTVVTWTTMIAAY 311
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 156/345 (45%), Gaps = 57/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WT+M+ YN GY E + L++ M + PD V +ACS LK+ G+ V+ +
Sbjct: 303 TWTTMIAAYNQRGYSMEALELYHCM---DIEPDDIALSNVLQACSRLKNLEQGRAVHSRI 359
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
S FE + V+ L+D+++KCG + A+ R
Sbjct: 360 ASRDFEPSLMVQTLLVDMYVKCGDL------------------------AEARR------ 389
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K +D++SW +++ Y+ F E + ME+ ++PN+I+ V+ AC+++
Sbjct: 390 TFDGFKARDVISWTSLITAYSHENFGREALEVFHSMEL--EGVEPNSITFCTVIDACSRL 447
Query: 212 KGVKLGKAIHGYVLRH-HI----------HLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ G+A+H V+ HI + + G V + VF+ + + W ++
Sbjct: 448 SSLLPGRALHSRVVATGHISDEFVGNALVSMYSKFGRVDFARMVFDSIPVKRYPSWRVML 507
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTGSF- 313
A ++G +AL++ + + +P + + L +C L + + + + F
Sbjct: 508 VALTQNGHSHEALEMYSRIHLEGFRPGSPIFSAALVSCTALEDVSRARAIHGVIKSSDFY 567
Query: 314 ----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ N L+++Y +CG ++K+R +F M KN VSW MI Y
Sbjct: 568 PDLVLSNVLMNVYAKCGELEKARLVFDQMTEKNEVSWTTMIGGYA 612
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 76/345 (22%), Positives = 144/345 (41%), Gaps = 57/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTS++ Y+ + E + +F+ M +GV P+ V ACS L G+ ++ +
Sbjct: 401 SWTSLITAYSHENFGREALEVFHSMELEGVEPNSITFCTVIDACSRLSSLLPGRALHSRV 460
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
++ G + D V N+L+ Y+K + +
Sbjct: 461 VAT-------------------GHI-----------SDEFVGNALVSMYSKFGRVDFARM 490
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F I K SW ML G E + + + +P + S L +C +
Sbjct: 491 VFDSIPVKRYPSWRVMLVALTQNGHSHEALEMYSRIHL--EGFRPGSPIFSAALVSCTAL 548
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ V +AIHG + +++ CG + + VF+Q++ ++ V W ++I
Sbjct: 549 EDVSRARAIHGVIKSSDFYPDLVLSNVLMNVYAKCGELEKARLVFDQMTEKNEVSWTTMI 608
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
+ ++G+ +AL+L + + +V+PN + V V+ +C L AL +G L
Sbjct: 609 GGYAQNGRPAEALELYKAM---DVQPNFIAFVPVISSCADLGALVEGQRVHARLSDAGLQ 665
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ AL++MY +CG + +R+ F + +WN M + Y
Sbjct: 666 NNEVIVTALVNMYAKCGKLGLAREFFDSTYCPDAGAWNSMATAYA 710
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 72/328 (21%), Positives = 142/328 (43%), Gaps = 58/328 (17%)
Query: 30 FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
+ +W M+ G+ E + ++ + +G RP + +C+ L+D + ++
Sbjct: 500 YPSWRVMLVALTQNGHSHEALEMYSRIHLEGFRPGSPIFSAALVSCTALEDVSRARAIHG 559
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
+ S F D +++N L++ YAKC L+ +
Sbjct: 560 VIKSSDFY------------------------------PDLVLSNVLMNVYAKCGELEKA 589
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F ++ +K+ VSW M+ GYA G E L M D+QPN I+ V+++CA
Sbjct: 590 RLVFDQMTEKNEVSWTTMIGGYAQNGRPAEALELYKAM-----DVQPNFIAFVPVISSCA 644
Query: 210 QVKGVKLGKAIHGY-----------VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ + G+ +H ++ +++ CG + + F+ D WNS
Sbjct: 645 DLGALVEGQRVHARLSDAGLQNNEVIVTALVNMYAKCGKLGLAREFFDSTYCPDAGAWNS 704
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------ 306
+ +A+ + G L+L R++ + V+PN +T++SVL AC + L +
Sbjct: 705 MATAYAQFGHGSQVLELYREMCLQGVQPNGITLLSVLVACSHMGMLEECEHRFECMVADH 764
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKI 334
G+ S ++ + D+ GR G ++++ K+
Sbjct: 765 GIAPTSEHYSCMTDLLGRSGRLEEAEKV 792
>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
Length = 716
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 137/248 (55%), Gaps = 24/248 (9%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D V NSL+D YAK L+ + F +I +++VSW +M++G GF + L ++M
Sbjct: 199 DGFVMNSLVDMYAKAEDLECARKVFERIPDRNVVSWTSMISGCVQNGFASDGLLLFNKMR 258
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI-----------HLSTACGF 237
Q ++ P+ +++ V+ AC+ + G+ G+ +HG V++ + + CG
Sbjct: 259 --QDNVPPSEYTIATVITACSALFGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGE 316
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ + VF++LS D+V+W ++I + ++G +DAL L D AN+ PN+VT +VL A
Sbjct: 317 LDHARCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSA 376
Query: 298 CLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
+L A+ GL + V NAL+DMY +C A+ ++ +IF + +K++V+W
Sbjct: 377 SAQLRDLSLGKSIHGLAVKLGLVEYNVVGNALVDMYAKCQAVSEADRIFGRISNKDVVAW 436
Query: 347 NVMISVYG 354
N MIS Y
Sbjct: 437 NSMISGYA 444
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 154/349 (44%), Gaps = 62/349 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ G+ + + LF M V P + V ACS L G+ ++ +
Sbjct: 233 SWTSMISGCVQNGFASDGLLLFNKMRQDNVPPSEYTIATVITACSALFGLHQGRWMHGSV 292
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I N+ ++ +L+D Y KC L + C
Sbjct: 293 IKQGLMSNS------------------------------FISAALLDMYVKCGELDHARC 322
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ----TDMQPNTISLSGVLAA 207
F ++ DLV W M+ GY G N LD + + ++ PN+++ + VL+A
Sbjct: 323 VFDELSYIDLVLWTTMIVGYTQNG------NPLDALRLFLDKRFANIAPNSVTTATVLSA 376
Query: 208 CAQVKGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVW 256
AQ++ + LGK+IHG ++ + + C V + +F ++S +DVV W
Sbjct: 377 SAQLRDLSLGKSIHGLAVKLGLVEYNVVGNALVDMYAKCQAVSEADRIFGRISNKDVVAW 436
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALP 305
NS+IS + + DAL L + + + P+ +++V+ L A + L A+
Sbjct: 437 NSMISGYAENNMGDDALMLFKQMSLQGSSPDAISVVNALSASVCLGDLLIGKSIHGYAVK 496
Query: 306 QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ +V AL+++Y +CG + +R++F M +N V+W MI YG
Sbjct: 497 HAFVSNIYVDTALLNLYNKCGDLLSARRVFDEMNDRNSVTWCAMIGGYG 545
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 131/277 (47%), Gaps = 43/277 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT+M+ Y G + + LF + P+ V A ++L+D +GK ++
Sbjct: 335 WTTMIVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSASAQLRDLSLGKSIHG--- 391
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
L +K G +E +V N+L+D YAKC+ + +
Sbjct: 392 ----------------LAVKLGLVEYN-----------VVGNALVDMYAKCQAVSEADRI 424
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F +I KD+V+WN+M++GYA ++ L +M + + P+ IS+ L+A +
Sbjct: 425 FGRISNKDVVAWNSMISGYAENNMGDDALMLFKQMSLQGS--SPDAISVVNALSASVCLG 482
Query: 213 GVKLGKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ +GK+IHGY ++H +I++ TA CG ++ + VF++++ R+ V W ++I
Sbjct: 483 DLLIGKSIHGYAVKHAFVSNIYVDTALLNLYNKCGDLLSARRVFDEMNDRNSVTWCAMIG 542
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ G ++ L +++ V PN + S+L C
Sbjct: 543 GYGMQGDSAGSIHLFGEMLKDGVYPNDIAFTSILSTC 579
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 76/195 (38%), Gaps = 32/195 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W SM+ Y ++ + LF M +G PD A L D +GK ++ Y +
Sbjct: 436 WNSMISGYAENNMGDDALMLFKQMSLQGSSPDAISVVNALSASVCLGDLLIGKSIHGYAV 495
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F N V+ +L++ Y KC L +
Sbjct: 496 KHAFVSN------------------------------IYVDTALLNLYNKCGDLLSARRV 525
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ ++ V+W AM+ GY + G +L EM ++ + PN I+ + +L+ C+
Sbjct: 526 FDEMNDRNSVTWCAMIGGYGMQGDSAGSIHLFGEM--LKDGVYPNDIAFTSILSTCSHSG 583
Query: 213 GVKLGKAIHGYVLRH 227
V GK + +H
Sbjct: 584 MVTAGKRYFDSMAQH 598
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP---NTV 289
A G + + VF+ D + +++ V++ + DA+ L D+ P +
Sbjct: 108 AALGDLASARMVFDGTPRPDAYSYGAMLWCLVQTERHADAVALHHDMRRRRPCPEAQDDF 167
Query: 290 TIVSVLPACLKLAALPQGL----------GTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+ L AC++ A G G FV N+L+DMY + ++ +RK+F +P
Sbjct: 168 VLSLALKACIRSAEYSYGRSLHCDAIKVGGADGFVMNSLVDMYAKAEDLECARKVFERIP 227
Query: 340 HKNLVSWNVMIS 351
+N+VSW MIS
Sbjct: 228 DRNVVSWTSMIS 239
>gi|302799100|ref|XP_002981309.1| hypothetical protein SELMODRAFT_114322 [Selaginella moellendorffii]
gi|300150849|gb|EFJ17497.1| hypothetical protein SELMODRAFT_114322 [Selaginella moellendorffii]
Length = 682
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 93/350 (26%), Positives = 163/350 (46%), Gaps = 61/350 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT ++ G E + L MI +G RPD + C+ D GK + ++
Sbjct: 25 SWTMILAACARNGRNLEALLLVRRMIGEGARPDVVCFVTILDLCAATADLEQGKVAHAWI 84
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
++ E ++ V + N+LI+ Y KCR L ++
Sbjct: 85 LACGVESSSRV-----------------------------LGNALINMYGKCRNLDLARA 115
Query: 152 KFSKIKQ----KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
+F +++ +D+V+WN++LA + G+ EE L EME+ ++P++++L+ VL +
Sbjct: 116 QFDRMEHQDHGRDVVTWNSLLAAFTHNGYLEEAARLFQEMEV--EGIKPSSVTLTCVLES 173
Query: 208 CAQVKGVKLGKAIHGYVL-----------RHHIHLSTACGFVICSCSVFNQLSTRDVVVW 256
C+ G + GK H VL + + CG + S VF + +D++ W
Sbjct: 174 CS---GDRQGKLFHDRVLDLGLQGDEFLMNSLVKMYARCGRLEESRLVFRAIDQKDIISW 230
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANV-KPNTVTIVSVLPACLKLAAL----------- 304
N +IS R G +A++LLR++ + +P+ VT +SV+ AC L L
Sbjct: 231 NVMISLEARLGSSEEAVELLREIDLEGFPEPDEVTFISVVDACSCLGDLDLCFTIQELVS 290
Query: 305 PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G + NA+++M+G+ G + +R F +P KN+VSWN +IS Y
Sbjct: 291 SAGFDDDLLLGNAVVNMFGKSGCLDAARATFDRLPVKNVVSWNCLISGYA 340
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 104/405 (25%), Positives = 177/405 (43%), Gaps = 85/405 (20%)
Query: 1 MELGIQVHAHLIVCGVELCA-FLGSQLLEVF-------------------------CNWT 34
+E G HA ++ CGVE + LG+ L+ ++ W
Sbjct: 74 LEQGKVAHAWILACGVESSSRVLGNALINMYGKCRNLDLARAQFDRMEHQDHGRDVVTWN 133
Query: 35 SMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI 94
S++ + GY EE LF M +G++P V ++CS R GK +D ++ +
Sbjct: 134 SLLAAFTHNGYLEEAARLFQEMEVEGIKPSSVTLTCVLESCS---GDRQGKLFHDRVLDL 190
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFS 154
+G+ +FL+N SL+ YA+C L+ S F
Sbjct: 191 GLQGD-----------------------------EFLMN-SLVKMYARCGRLEESRLVFR 220
Query: 155 KIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGV 214
I QKD++SWN M++ A G EE LL E+++ + +P+ ++ V+ AC+ + +
Sbjct: 221 AIDQKDIISWNVMISLEARLGSSEEAVELLREIDL-EGFPEPDEVTFISVVDACSCLGDL 279
Query: 215 KLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAF 263
L I V +++ G + + + F++L ++VV WN +IS +
Sbjct: 280 DLCFTIQELVSSAGFDDDLLLGNAVVNMFGKSGCLDAARATFDRLPVKNVVSWNCLISGY 339
Query: 264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGS 312
++ Q L+L R + VK N+VT VS+L AC + AL GL +
Sbjct: 340 AQNLQGRRCLELFRQMDQEGVKANSVTFVSLLDACSTIPALDFGRELHLRITAAGLELHT 399
Query: 313 FVWNALIDMYGRCGAIQKSRKIFVLMPHKNL---VSWNVMISVYG 354
V ALI+MYG+C +Q ++++ L V+WN + + Y
Sbjct: 400 VVATALINMYGKCQELQLAQELLERYQSTGLRDSVTWNAIAAAYA 444
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 119/238 (50%), Gaps = 26/238 (10%)
Query: 139 FYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT 198
+ KC ++V+ F + + +L SW +LA A G E LL MI +P+
Sbjct: 1 MFGKCGDIEVAREIFHGLWRPNLFSWTMILAACARNGRNLEA--LLLVRRMIGEGARPDV 58
Query: 199 ISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST------------ACGFVICSCSVFN 246
+ +L CA ++ GK H ++L + S+ C + + + F+
Sbjct: 59 VCFVTILDLCAATADLEQGKVAHAWILACGVESSSRVLGNALINMYGKCRNLDLARAQFD 118
Query: 247 QLS----TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC---- 298
++ RDVV WNS+++AF +G + +A L +++ V +KP++VT+ VL +C
Sbjct: 119 RMEHQDHGRDVVTWNSLLAAFTHNGYLEEAARLFQEMEVEGIKPSSVTLTCVLESCSGDR 178
Query: 299 ----LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
L GL F+ N+L+ MY RCG +++SR +F + K+++SWNVMIS+
Sbjct: 179 QGKLFHDRVLDLGLQGDEFLMNSLVKMYARCGRLEESRLVFRAIDQKDIISWNVMISL 236
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/346 (20%), Positives = 145/346 (41%), Gaps = 58/346 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W ++ Y + LF M +GV+ + + ACS + G++++ +
Sbjct: 331 SWNCLISGYAQNLQGRRCLELFRQMDQEGVKANSVTFVSLLDACSTIPALDFGRELHLRI 390
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ E + V L++++ KC +++ L E
Sbjct: 391 TAAGLELHTVVATALINMYGKCQELQLAQELLE--------------------------- 423
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ- 210
++ +D V+WNA+ A YA G E L M+ Q ++ + +L AC
Sbjct: 424 RYQSTGLRDSVTWNAIAAAYAQNGHPLEALELFWRMQ--QQGVRAQEATFVTILDACGDS 481
Query: 211 ----VKGVKLGK-------AIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
G + K AI G +L + + CG V + + LS+R ++ W S+
Sbjct: 482 SSLLAHGRSIAKLSSWTSDAIKGALL----GMYSKCGCVDDALAALQSLSSRGLLAWTSM 537
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC----------LKLAALPQGLG 309
++A+ G+ +AL +L + V P+ V +V+ AC ++LA + G
Sbjct: 538 LAAYAHVGRASEALRVLGQMQHDGVVPDDVAFSAVVFACSHAGLLHEALVRLAWVSGDYG 597
Query: 310 T--GSFVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
T G+ ++ ++D+ R G +Q++ ++ MP++ + ++W ++
Sbjct: 598 TAMGAGLYECVVDVLARMGRLQEAEELMHAMPYEPDSLAWMALLGA 643
>gi|297799466|ref|XP_002867617.1| hypothetical protein ARALYDRAFT_354257 [Arabidopsis lyrata subsp.
lyrata]
gi|297313453|gb|EFH43876.1| hypothetical protein ARALYDRAFT_354257 [Arabidopsis lyrata subsp.
lyrata]
Length = 758
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 150/327 (45%), Gaps = 61/327 (18%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ Y LG YE+ + L++ M + GV+PD F P+V KAC + ++G+ ++ ++
Sbjct: 394 WNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDLV 453
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F D V N+L+D YAKC + +
Sbjct: 454 KAGF------------------------------GYDVHVLNALVDMYAKCGDIVKARNV 483
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I KD VSWN+ML GY G E ++ M+Q + P+ +++S VL A+V
Sbjct: 484 FDMIPNKDYVSWNSMLTGYLHHGLLHEALDIF--RLMVQNGIDPDKVAISSVL---ARVL 538
Query: 213 GVKLGKAIHGYVLRHHI--HLSTACGFVIC---------SCSVFNQLSTRDVVVWNSIIS 261
K G+ +HG+V+R + LS A ++ +C +F+Q+ RD V WN+IIS
Sbjct: 539 SFKHGRQLHGWVIRRGMEWELSVANALIVLYSKRGQLGQACFIFDQMLERDTVSWNAIIS 598
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------- 314
A R + + A+ KP+ +T VSVL C + G S +
Sbjct: 599 AHSRDS---NGFKYFEQMQHADAKPDGITFVSVLSLCANTGMVEDGERLFSLMSKEYGIN 655
Query: 315 -----WNALIDMYGRCGAIQKSRKIFV 336
+ ++++YGR G ++++ + V
Sbjct: 656 PKMEHYACMVNLYGRAGMMEEAYSMIV 682
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 129/243 (53%), Gaps = 23/243 (9%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKD--LVSWNAMLAGYALGGFREEVTNLLDEMEM 189
+++ L+ YA C Y +V+H F ++ +++ +WN++++GYA G E+ L +M
Sbjct: 360 ISSKLVRLYASCGYAEVAHEVFDRMSKRESSPFAWNSLISGYAELGQYEDAMALY--FQM 417
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIH--------GY---VLRHHIHLSTACGFV 238
+ ++P+ + VL AC + V++G+AIH GY VL + + CG +
Sbjct: 418 AEDGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDLVKAGFGYDVHVLNALVDMYAKCGDI 477
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ + +VF+ + +D V WNS+++ ++ G + +ALD+ R ++ + P+ V I SVL
Sbjct: 478 VKARNVFDMIPNKDYVSWNSMLTGYLHHGLLHEALDIFRLMVQNGIDPDKVAISSVLARV 537
Query: 299 LKLA--------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
L + +G+ V NALI +Y + G + ++ IF M ++ VSWN +I
Sbjct: 538 LSFKHGRQLHGWVIRRGMEWELSVANALIVLYSKRGQLGQACFIFDQMLERDTVSWNAII 597
Query: 351 SVY 353
S +
Sbjct: 598 SAH 600
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 92/177 (51%), Gaps = 24/177 (13%)
Query: 201 LSGVLAACAQVKGVKLGKAIH----GYVLRHHIHLST-------ACGFVICSCSVFNQLS 249
+ +L C ++ + G +H Y+LR+++ +S+ +CG+ + VF+++S
Sbjct: 326 FASLLETCYNLRAIDHGVRVHHLIPPYLLRNNVGISSKLVRLYASCGYAEVAHEVFDRMS 385
Query: 250 TRD--VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL--- 304
R+ WNS+IS + GQ DA+ L + VKP+ T VL AC + ++
Sbjct: 386 KRESSPFAWNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKACGGIGSVQIG 445
Query: 305 --------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G G V NAL+DMY +CG I K+R +F ++P+K+ VSWN M++ Y
Sbjct: 446 EAIHRDLVKAGFGYDVHVLNALVDMYAKCGDIVKARNVFDMIPNKDYVSWNSMLTGY 502
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 84/193 (43%), Gaps = 42/193 (21%)
Query: 30 FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
+ +W SM+ Y G E +++F LM+ G+ PD V + + ++ G+ ++
Sbjct: 492 YVSWNSMLTGYLHHGLLHEALDIFRLMVQNGIDPDKVAISSV---LARVLSFKHGRQLHG 548
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
++I M+ + V N+LI Y+K L +
Sbjct: 549 WVIR------------------------------RGMEWELSVANALIVLYSKRGQLGQA 578
Query: 150 HCKFSKIKQKDLVSWNAMLAGYAL--GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
F ++ ++D VSWNA+++ ++ GF+ ++M+ D +P+ I+ VL+
Sbjct: 579 CFIFDQMLERDTVSWNAIISAHSRDSNGFK-----YFEQMQ--HADAKPDGITFVSVLSL 631
Query: 208 CAQVKGVKLGKAI 220
CA V+ G+ +
Sbjct: 632 CANTGMVEDGERL 644
>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 722
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 164/345 (47%), Gaps = 27/345 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y G +E LF M D V PD + + AC + R + +Y+++I
Sbjct: 180 WNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLI 239
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHC 151
+ + L+ ++ G M++ F +M ++ V+ +++ Y+KC L +
Sbjct: 240 ENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQV 299
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + ++KDLV W M++ Y + +E + +EM + ++P+ +S+ V++ACA +
Sbjct: 300 IFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEM--CCSGIKPDVVSMFSVISACANL 357
Query: 212 KGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ K +H + L + ++ A CG + + VF ++ R+VV W+S+I
Sbjct: 358 GILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMI 417
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
+A G+ DAL L + NV+PN VT V VL C + +G + +
Sbjct: 418 NALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNI 477
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ ++D++GR ++++ ++ MP N+V W ++S
Sbjct: 478 TPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSA 522
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 156/355 (43%), Gaps = 86/355 (24%)
Query: 52 LFYLMIDK-GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLF 110
LFY I G R D F + KA S++ G +++ I + V+ +D++
Sbjct: 97 LFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMY 156
Query: 111 IKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAG 170
CGR+ +F+EM SH +D+V+WN M+
Sbjct: 157 ASCGRINYARNVFDEM----------------------SH--------RDVVTWNTMIER 186
Query: 171 YALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL----R 226
Y G +E L +EM+ +++ P+ + L +++AC + ++ +AI+ +++ R
Sbjct: 187 YCRFGLVDEAFKLFEEMK--DSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVR 244
Query: 227 HHIHLSTA--------------------------------------CGFVICSCSVFNQL 248
HL TA CG + + +F+Q
Sbjct: 245 MDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQT 304
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-- 306
+D+V W ++ISA+V S +AL + ++ + +KP+ V++ SV+ AC L L +
Sbjct: 305 EKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAK 364
Query: 307 ---------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
GL + + NALI+MY +CG + +R +F MP +N+VSW+ MI+
Sbjct: 365 WVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINA 419
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 82/180 (45%), Gaps = 22/180 (12%)
Query: 197 NTISLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVF 245
+ S +L A ++V + G +HG +V + + +CG + + +VF
Sbjct: 110 DQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVF 169
Query: 246 NQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP 305
+++S RDVV WN++I + R G V +A L ++ +NV P+ + + +++ AC + +
Sbjct: 170 DEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMR 229
Query: 306 QGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
F + AL+ MY G + +R+ F M +NL M+S Y
Sbjct: 230 YNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYS 289
>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
Length = 1106
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 97/353 (27%), Positives = 159/353 (45%), Gaps = 55/353 (15%)
Query: 20 AFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK 79
AF G+ +V + +++ G+ E +Y M GV + + ACS K
Sbjct: 286 AFKGTADRDVVV-YNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSK 344
Query: 80 DYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDF 139
GK ++ + I +G++ D + N+LI
Sbjct: 345 ALEAGKLIHSH---ISEDGHSS---------------------------DVQIGNALISM 374
Query: 140 YAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI 199
YA+C L + F + ++DL+SWNA++AGYA R E L +M+ ++P +
Sbjct: 375 YARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQ--SEGVKPGRV 432
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYVLRHHI----HLSTA-------CGFVICSCSVFNQL 248
+ +L+ACA GK IH +LR I HL+ A CG ++ + +VF
Sbjct: 433 TFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGT 492
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL---- 304
RDV+ WNS+I+ + G A L +++ ++P+ +T SVL C AL
Sbjct: 493 QARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGK 552
Query: 305 -------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
GL + NALI+MY RCG++Q +R +F + H++++SW MI
Sbjct: 553 QIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMI 605
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/397 (23%), Positives = 176/397 (44%), Gaps = 75/397 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G +H+H+ G +G+ L+ ++ +W +++
Sbjct: 346 LEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAG 405
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y E + L+ M +GV+P + AC+ Y GK +++ ++ + N
Sbjct: 406 YARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSN 465
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ L++++ +CG + +FE + +
Sbjct: 466 GHLANALMNMYRRCGSLMEAQNVFE------------------------------GTQAR 495
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D++SWN+M+AG+A G E L EM+ +++P+ I+ + VL+ C + ++LGK
Sbjct: 496 DVISWNSMIAGHAQHGSYETAYKLFQEMQ--NEELEPDNITFASVLSGCKNPEALELGKQ 553
Query: 220 IHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IHG + L+ ++L A CG + + +VF+ L RDV+ W ++I G+
Sbjct: 554 IHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGE 613
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTG----SFVWNA 317
+ A++L + +P T S+L C A L +G L +G + V NA
Sbjct: 614 DMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNA 673
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
LI Y + G++ +R++F MP +++VSWN +I+ Y
Sbjct: 674 LISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYA 710
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 101/384 (26%), Positives = 168/384 (43%), Gaps = 66/384 (17%)
Query: 4 GIQVHAHLI--------VCGVELCA---FLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNL 52
GI+ + HL CG + A F G+Q +V +W SM+ + G YE L
Sbjct: 461 GIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVI-SWNSMIAGHAQHGSYETAYKL 519
Query: 53 FYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIK 112
F M ++ + PD+ V C + +GK ++
Sbjct: 520 FQEMQNEELEPDNITFASVLSGCKNPEALELGKQIH------------------------ 555
Query: 113 CGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYA 172
GR+ SGL D + N+LI+ Y +C L+ + F ++ +D++SW AM+ G A
Sbjct: 556 -GRI-TESGL----QLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCA 609
Query: 173 LGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS 232
G + L +M+ +P + S +L C + GK + Y+L L
Sbjct: 610 DQGEDMKAIELFWQMQ--NEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELD 667
Query: 233 TACGFVICSC-----------SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281
T G + S VF+++ +RD+V WN II+ + ++G A++ +
Sbjct: 668 TGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQE 727
Query: 282 ANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQK 330
+V PN + VS+L AC +AL +G L V ALI MY +CG+ +
Sbjct: 728 QDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGE 787
Query: 331 SRKIFVLMPHKNLVSWNVMISVYG 354
++++F + KN+V+WN MI+ Y
Sbjct: 788 AQEVFDNIIEKNVVTWNAMINAYA 811
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 148/345 (42%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ Y G+ ++ LF M + G P+ + AC + GK ++ +
Sbjct: 95 SWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQI 154
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I ++ +D V NSL+ Y KC L +
Sbjct: 155 IKAGYQ------------------------------RDPRVQNSLLSMYGKCGDLPRARQ 184
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ I +D+VS+N ML YA + +E L +M + P+ ++ +L A
Sbjct: 185 VFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMS--SEGISPDKVTYINLLDAFTTP 242
Query: 212 KGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ GK IH L I + TA CG V + F + RDVVV+N++I
Sbjct: 243 SMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALI 302
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL---------GTG 311
+A + G V+A + + V N T +S+L AC AL G G
Sbjct: 303 AALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHS 362
Query: 312 SFVW--NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
S V NALI MY RCG + K+R++F MP ++L+SWN +I+ Y
Sbjct: 363 SDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYA 407
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 87/383 (22%), Positives = 156/383 (40%), Gaps = 76/383 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ELG Q+H + G++L LG+ L+ ++ +WT+M+G
Sbjct: 548 LELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGG 607
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
G + + LF+ M ++G RP + K C+ GK V Y+++ +E
Sbjct: 608 CADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYE-- 665
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D V N+LI Y+K + + F K+ +
Sbjct: 666 ----------------------------LDTGVGNALISAYSKSGSMTDAREVFDKMPSR 697
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSWN ++AGYA G + +M+ + D+ PN S +L AC+ ++ GK
Sbjct: 698 DIVSWNKIIAGYAQNGLGQTAVEFAYQMQ--EQDVVPNKFSFVSLLNACSSFSALEEGKR 755
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H +++ I + CG + VF+ + ++VV WN++I+A+ + G
Sbjct: 756 VHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGL 815
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WN 316
AL + +KP+ T S+L AC + +G S + +
Sbjct: 816 ASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYG 875
Query: 317 ALIDMYGRCGAIQKSRKIFVLMP 339
L+ + GR Q++ + MP
Sbjct: 876 CLVGLLGRARRFQEAETLINQMP 898
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 122/246 (49%), Gaps = 24/246 (9%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D ++N LI+ Y KCR + +H F ++ ++D++SWN++++ YA GF+++ L +EM+
Sbjct: 61 DIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQ 120
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGF 237
PN I+ +L AC ++ GK IH +++ + + CG
Sbjct: 121 --NAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGD 178
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ + VF +S RDVV +N+++ + + V + L L + + P+ VT +++L A
Sbjct: 179 LPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDA 238
Query: 298 CLKLAAL-----------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
+ L +GL + V AL+ M RCG + +++ F +++V +
Sbjct: 239 FTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVY 298
Query: 347 NVMISV 352
N +I+
Sbjct: 299 NALIAA 304
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 73/137 (53%), Gaps = 11/137 (8%)
Query: 229 IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288
I++ C V+ + VF ++ RDV+ WNS+IS + + G A L ++ A PN
Sbjct: 69 INMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNK 128
Query: 289 VTIVSVLPACLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVL 337
+T +S+L AC A L G S V N+L+ MYG+CG + ++R++F
Sbjct: 129 ITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAG 188
Query: 338 MPHKNLVSWNVMISVYG 354
+ +++VS+N M+ +Y
Sbjct: 189 ISPRDVVSYNTMLGLYA 205
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 11/77 (14%)
Query: 289 VTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVL 337
T V++L C + LP+ +G F+ N LI+MY +C ++ + ++F
Sbjct: 28 ATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKE 87
Query: 338 MPHKNLVSWNVMISVYG 354
MP ++++SWN +IS Y
Sbjct: 88 MPRRDVISWNSLISCYA 104
>gi|359474320|ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Vitis vinifera]
Length = 580
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 111/398 (27%), Positives = 194/398 (48%), Gaps = 64/398 (16%)
Query: 6 QVHAHLIVCGV-ELCAFLGSQLLEVFCNWTSMMGMY--NVL------------------- 43
QVHA +++ G+ L L Q+L N+++ + Y +VL
Sbjct: 22 QVHALILIHGLSHLEPILARQILISASNYSATVAQYVHSVLHHSKSPDSFSWACAIRFST 81
Query: 44 --GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGK-----DVYDYMISIKF 96
G ++E L+ M G+ P F KAC+ + YR+G V + S
Sbjct: 82 QHGQFKEAFALYVQMQRWGLCPTTFALSSALKACARIA-YRMGGISIHGQVQKFGFSCGG 140
Query: 97 EGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSK 155
+G V+ L+D + K G MEI +F+EM + +V+ NS++ Y K L V+ F +
Sbjct: 141 DG-IYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDE 199
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEME---------MIQTDMQPNTI-SLSGVL 205
I QKD++SWN+M++GYA G E+ ++L +M MI ++ I S
Sbjct: 200 IPQKDVISWNSMISGYARAGDMEKASSLFQQMPERNFASWNAMISGHVEFGDIDSARSFF 259
Query: 206 AACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVR 265
A Q V I GY + CG V +C +F+Q+ +D++++N++I+ + +
Sbjct: 260 DAMPQKNNVSWMTMISGY---------SKCGDVDSACELFDQVGGKDLLLFNAMIACYAQ 310
Query: 266 SGQVVDALDLLRDVI--VANVKPNTVTIVSVLPACLKLAALPQGLGTGSF---------- 313
+ + +AL+L +++ NV+P+ +T+ SV+ AC +L L G S+
Sbjct: 311 NSRPNEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDG 370
Query: 314 -VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ AL+D+Y +CG+I K+ ++F + K+LV++ MI
Sbjct: 371 HLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMI 408
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 134/266 (50%), Gaps = 23/266 (8%)
Query: 97 EGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSK 155
E N ++ ++ G ++ F+ M Q V+ ++I Y+KC + + F +
Sbjct: 233 ERNFASWNAMISGHVEFGDIDSARSFFDAMPQKNNVSWMTMISGYSKCGDVDSACELFDQ 292
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
+ KDL+ +NAM+A YA E NL + M ++QP+ ++L+ V++AC+Q+ ++
Sbjct: 293 VGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLR 352
Query: 216 LGKAIHGYVLRHHI----HLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
G I Y+ R I HL+TA CG + + +F+ L +D+V + ++I
Sbjct: 353 FGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCG 412
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV---------- 314
+G+ +DA+ L +++ A + PN++T + +L A + +G + +
Sbjct: 413 INGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEGYRCFTSMKKYNLVPSVD 472
Query: 315 -WNALIDMYGRCGAIQKSRKIFVLMP 339
+ ++D++GR G +Q++ ++ MP
Sbjct: 473 HYGIMVDLFGRAGRLQEALELIKSMP 498
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 103/222 (46%), Gaps = 21/222 (9%)
Query: 150 HCKFSKIKQKDLVSWN-AMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
H K D SW A+ G F+E + +M + + P T +LS L AC
Sbjct: 59 HSVLHHSKSPDSFSWACAIRFSTQHGQFKEAFALYV---QMQRWGLCPTTFALSSALKAC 115
Query: 209 AQVKGVKLGKAIHGYVLR-------HHIHLSTAC-------GFVICSCSVFNQLSTRDVV 254
A++ G +IHG V + I++ TA G + + +F++++ R+VV
Sbjct: 116 ARIAYRMGGISIHGQVQKFGFSCGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVV 175
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA--CLKLAALPQGLGTGS 312
WNS+++ +++SG +V A + ++ +V I A K ++L Q + +
Sbjct: 176 SWNSMLAGYLKSGDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKASSLFQQMPERN 235
Query: 313 FV-WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
F WNA+I + G I +R F MP KN VSW MIS Y
Sbjct: 236 FASWNAMISGHVEFGDIDSARSFFDAMPQKNNVSWMTMISGY 277
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 28/168 (16%)
Query: 214 VKLGKAIHGYVLRH---HIHLSTACGFVICSC-----------SVFNQLSTRDVVVWNSI 259
VK K +H +L H H+ A +I + SV + + D W
Sbjct: 17 VKQAKQVHALILIHGLSHLEPILARQILISASNYSATVAQYVHSVLHHSKSPDSFSWACA 76
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL----------- 308
I + GQ +A L + + P T + S L AC ++A G+
Sbjct: 77 IRFSTQHGQFKEAFALYVQMQRWGLCPTTFALSSALKACARIAYRMGGISIHGQVQKFGF 136
Query: 309 ---GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G G +V AL+D Y + G ++ +RK+F M +N+VSWN M++ Y
Sbjct: 137 SCGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGY 184
>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 92/352 (26%), Positives = 157/352 (44%), Gaps = 85/352 (24%)
Query: 52 LFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111
L+ M+ G+ P+ F P V KAC+ Y +G V+ + +ACV+ +L++++
Sbjct: 121 LYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSFKLGMGSHACVQNAILNIYV 180
Query: 112 KCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGY 171
CG + +F++ I ++ LVSWN+M+ GY
Sbjct: 181 ACGLITSARRVFDD------------------------------ISERTLVSWNSMINGY 210
Query: 172 ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHL 231
+ G EE + EM+ + ++P+ +L G+L+ + LG+ +H +++ I +
Sbjct: 211 SKMGRSEEAVLMFREMQ--EVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEI 268
Query: 232 ST-----------ACGFVICSCSV-------------------------------FNQLS 249
+ CG + C+ SV FNQ+
Sbjct: 269 DSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMP 328
Query: 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG 309
++VV WNSII V+ G +A+DL + + V N T+V++L +C + L G
Sbjct: 329 GKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQ 388
Query: 310 TGSFVW-----------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
S+++ NA+IDMY +CGA+Q + +F MP KN VSWNV+I
Sbjct: 389 AHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVII 440
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 167/344 (48%), Gaps = 27/344 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y+ +G EE V +F M + G+ PD F + ++ ++ +G+ V+ +M
Sbjct: 202 SWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHM 261
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSH 150
+ E ++ V L+D++ KCG ++ +F++M D+D + +I+ YA + +
Sbjct: 262 VVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCAL 321
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F+++ K++VSWN+++ + G E +L M + + N +L +L++C+
Sbjct: 322 EFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLF--YRMCDSGVMANDTTLVAILSSCSH 379
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ + LGK H Y+ ++I LS CG + + VF + ++ V WN I
Sbjct: 380 MGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVI 439
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC------------LKLAALPQG 307
I A G +A+++ + + V P+ +T +L AC ++ L G
Sbjct: 440 IGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQHYFEIMNLTFG 499
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMI 350
+ + ++D+ GR G + ++ + MP K ++V W+ ++
Sbjct: 500 ISPDVEHYACMVDLLGRRGLLGEAISLIKKMPVKPDVVVWSALL 543
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 119/241 (49%), Gaps = 24/241 (9%)
Query: 136 LIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ 195
L+ + R L+ +H F +I Q + +N ++ GY+ + + +LL M+ +
Sbjct: 74 LVSSSVQLRDLRYAHKLFDQIPQPNKFMFNHLIKGYS--NSSDPIKSLLLYRRMVCDGIL 131
Query: 196 PNTISLSGVLAACA-----------QVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSV 244
PN ++ VL ACA + KLG H V +++ ACG + + V
Sbjct: 132 PNQFTIPFVLKACAAKSCYWLGVCVHAQSFKLGMGSHACVQNAILNIYVACGLITSARRV 191
Query: 245 FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK---- 300
F+ +S R +V WNS+I+ + + G+ +A+ + R++ ++P+ T+V +L K
Sbjct: 192 FDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNF 251
Query: 301 -------LAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L + G+ S V NAL+DMY +CG ++ ++ +F M K++VSW MI+ Y
Sbjct: 252 DLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAY 311
Query: 354 G 354
Sbjct: 312 A 312
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 125/283 (44%), Gaps = 48/283 (16%)
Query: 11 LIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPK 70
LI C +E F + +W S++ + G Y E V+LFY M D GV +
Sbjct: 316 LIDCALE---FFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVA 372
Query: 71 VYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDF 130
+ +CS + D +GK + Y+ F+ N + L
Sbjct: 373 ILSSCSHMGDLALGKQAHSYI----FDNNITLSATLC----------------------- 405
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
N++ID YAKC L+ + F + +K+ VSWN ++ AL G+ +E + ++M+
Sbjct: 406 ---NAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQ-- 460
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV---------LRHH---IHLSTACGFV 238
+ + P+ I+ +G+L+AC+ V G+ + + H+ + L G +
Sbjct: 461 ASGVCPDEITFTGLLSACSHSGLVDTGQHYFEIMNLTFGISPDVEHYACMVDLLGRRGLL 520
Query: 239 ICSCSVFNQLSTR-DVVVWNSIISAFVRSGQVVDALDLLRDVI 280
+ S+ ++ + DVVVW++++ A G + +++ ++
Sbjct: 521 GEAISLIKKMPVKPDVVVWSALLGACRTYGNLAIGKQIMKQLL 563
>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 149/303 (49%), Gaps = 26/303 (8%)
Query: 63 PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGL 122
PD F P V KAC+ L + +GK V+ + + + L+D++ KC + L
Sbjct: 93 PDEFTFPFVVKACARLGLHNLGKQVHAQFFKFGKKSHLITENALIDMYTKCDNLLDAHNL 152
Query: 123 FEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVT 181
F+EM + ++ N +I + + ++ + F ++ + +VSW A+++GY G +
Sbjct: 153 FDEMHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDAL 212
Query: 182 NLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IH 230
++ EM++ ++P+ S+ VL ACA++ ++ GK IH + R+ I
Sbjct: 213 DVFREMQI--AGIEPDEASIISVLPACAKLGALETGKWIHMFCARNGLLRRTCICNALIE 270
Query: 231 LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
+ T CG + +C +F+Q+ RDV+ W+++I G+V +A+ + + N+KPN +T
Sbjct: 271 MYTKCGCIDQACQLFDQMRGRDVISWSTMIGGLANHGKVREAIAIFERMKQTNIKPNGIT 330
Query: 291 IVSVLPACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFVLM 338
V +L AC +GL + + +L+D+ GR G + ++ I M
Sbjct: 331 FVGLLSACAHAGFWEEGLMYFDTMKKDFHIEPEIEHYGSLVDLLGRAGRLSQALDIVEKM 390
Query: 339 PHK 341
P K
Sbjct: 391 PMK 393
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 117/267 (43%), Gaps = 54/267 (20%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+++ Y +G Y + +++F M G+ PD V AC++L GK ++ +
Sbjct: 194 SWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLPACAKLGALETGKWIHMFC 253
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
C+ L++++ KCG ++ LF++M
Sbjct: 254 ARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQM------------------------- 288
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+ +D++SW+ M+ G A G E + + M+ QT+++PN I+ G+L+ACA
Sbjct: 289 -----RGRDVISWSTMIGGLANHGKVREAIAIFERMK--QTNIKPNGITFVGLLSACAHA 341
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+ G ++ ++ H+ ++ + S++ R+G++
Sbjct: 342 GFWEEG-LMYFDTMKKDFHIEP------------------EIEHYGSLVDLLGRAGRLSQ 382
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPAC 298
ALD++ + +KP++ S+L +C
Sbjct: 383 ALDIVEKM---PMKPDSKIWGSLLSSC 406
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 63/158 (39%), Gaps = 48/158 (30%)
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVV 255
P+ + V+ ACA++ LGK +H + F + S ++
Sbjct: 93 PDEFTFPFVVKACARLGLHNLGKQVHAQFFK------------------FGKKS--HLIT 132
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW 315
N++I + + ++DA +L ++ G+ W
Sbjct: 133 ENALIDMYTKCDNLLDAHNLFDEM----------------------------HERGAISW 164
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
N +I + R G ++++R +F MP++ +VSW +IS Y
Sbjct: 165 NGIISGHVRLGQMRRARALFDEMPNRTIVSWTAIISGY 202
>gi|296082436|emb|CBI21441.3| unnamed protein product [Vitis vinifera]
Length = 832
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 157/290 (54%), Gaps = 24/290 (8%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT+++G Y+ G +E V + M KGV PD +V PKV++AC +L VG V+ ++
Sbjct: 431 WTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRACGQLLWLEVGIQVHKDVV 490
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHC 151
E + V L+D++ K G + +F+EM ++D L NS+I Y C+ ++ +
Sbjct: 491 ICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVERDVLSWNSMISGY--CKRIQDALN 548
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDE--MEMIQTDMQPNTISLSGVLAACA 209
F + + D+V+WNAM+ G+ E+ +L E +M ++ + N I++S VL AC
Sbjct: 549 VFELMDRFDVVTWNAMILGFV----DLEMGHLALECFSKMQRSGIMNNQITISTVLPAC- 603
Query: 210 QVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+K GK +H Y+ ++ IH+ + CG + + S+F+ + +RD+V WN+
Sbjct: 604 ---DLKSGKQVHAYITKNSFSSVIPVWNALIHMYSKCGCIGTAYSIFSNMISRDLVSWNT 660
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
+I F G AL LLRD+ ++V PN+VT S L AC + +G+
Sbjct: 661 MIGGFGMHGLGQFALQLLRDMSHSDVCPNSVTFTSALSACSHSGLVDEGM 710
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 130/299 (43%), Gaps = 63/299 (21%)
Query: 115 RMEITSGLFEEMDQDFLVNNSLIDF---YAKCRYLKVSHCK-------FSKIKQKDLVSW 164
RM + +G+FE ++ +L F + R L+ K F K+ Q ++ +W
Sbjct: 372 RMNLDNGIFEPVENAGTNEEALTRFAKLLSDERRLRRQRIKNSSAQALFDKLSQPNVFAW 431
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
A+L Y+ G +E EM++ + P+ V AC Q+ +++G +H V
Sbjct: 432 TAILGFYSRNGLSDECVRTYSEMKL--KGVLPDKYVFPKVFRACGQLLWLEVGIQVHKDV 489
Query: 225 L-----------RHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
+ I + + G V VF+++ RDV+ WNS+IS + + ++ DAL
Sbjct: 490 VICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVERDVLSWNSMISGYCK--RIQDAL 547
Query: 274 DLLR-----DVIVAN--------------------------VKPNTVTIVSVLPAC-LKL 301
++ DV+ N + N +TI +VLPAC LK
Sbjct: 548 NVFELMDRFDVVTWNAMILGFVDLEMGHLALECFSKMQRSGIMNNQITISTVLPACDLKS 607
Query: 302 AALPQG-LGTGSF-----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ SF VWNALI MY +CG I + IF M ++LVSWN MI +G
Sbjct: 608 GKQVHAYITKNSFSSVIPVWNALIHMYSKCGCIGTAYSIFSNMISRDLVSWNTMIGGFG 666
>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
Length = 609
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 109/423 (25%), Positives = 180/423 (42%), Gaps = 106/423 (25%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVF--CN-------------------WTSMMGMYNVLG 44
++HA ++ G+ C L + LL+ + CN W S++ YN
Sbjct: 23 KIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDHVSWASILTAYNQAK 82
Query: 45 YYEEIVNLF-YLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
+ +++F Y+ ++PDHFV + KAC+ L R+GK V+ +F V
Sbjct: 83 LPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVH-----ARF-----VL 132
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
P +D D +V +SL+D YAKC ++ F I K VS
Sbjct: 133 SPFVD--------------------DDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVS 172
Query: 164 WNAMLAGYALGGFREE---------VTNLLDEMEMIQTDMQP------------------ 196
W AML+GYA G ++E V NL +I +Q
Sbjct: 173 WTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGV 232
Query: 197 ---NTISLSGVLAACAQVKGVKLGKAIHGYVL-----------RHHIHLSTACGFVICSC 242
+ + LS V+ ACA + + LGK IHG V+ + + C ++ +
Sbjct: 233 DIVDPLVLSSVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAAR 292
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
+VFN++ RDVV W SII + G+ +ALDL +++A +KPN VT V ++ AC
Sbjct: 293 NVFNRMLHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAG 352
Query: 303 ALPQG------------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVM 349
+ +G + ++ +D+ R G + ++ + MPHK + +W +
Sbjct: 353 LVSKGRKLFKAMIEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAAL 412
Query: 350 ISV 352
+S
Sbjct: 413 LSA 415
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 12/132 (9%)
Query: 235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVS 293
C + + +F+++ RD V W SI++A+ ++ L + + + ++P+ +
Sbjct: 50 CNLLQDAHYLFDEMPQRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYAT 109
Query: 294 VLPACLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
+L AC L +L G + V ++L+DMY +CG +R +F + K
Sbjct: 110 LLKACASLCSLRLGKQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKT 169
Query: 343 LVSWNVMISVYG 354
VSW M+S Y
Sbjct: 170 SVSWTAMLSGYA 181
>gi|116310930|emb|CAH67868.1| B0403H10-OSIGBa0105A11.20 [Oryza sativa Indica Group]
Length = 804
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 165/347 (47%), Gaps = 56/347 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRP-DHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M+ Y G + E ++LF ++ P D A S+ +D +G+ ++ Y+
Sbjct: 283 WNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSLGQQLHGYL 342
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I G+ + ++ N+L+ Y++C ++ +
Sbjct: 343 IK---------------------------GMHRTLP--VILGNALVVMYSRCGNVQTAFD 373
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +KD+V+WN M+ + F ++ LL EM ++ ++++L+ VL+A +
Sbjct: 374 LFDRLPEKDIVTWNTMVTAFIQNDF--DLEGLLLVYEMQKSGFAADSVTLTAVLSASSNT 431
Query: 212 KGVKLGKAIHGYVLRHHIH----------LSTACGFVICSCSVFNQL--STRDVVVWNSI 259
+++GK HGY++RH I + G V + VF+ + RD V WN++
Sbjct: 432 GDLQIGKQAHGYLIRHGIEGEGLESYLIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNAM 491
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA------------ALPQG 307
I+ + +SGQ A+ + R ++ A ++P +VT+ SVLPAC + A+ +
Sbjct: 492 IAGYTQSGQPEKAILVFRAMLEAGLEPTSVTLASVLPACDPVGGGVYSGKQIHCFAVRRC 551
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L T FV ALIDMY +CG I + +F M K+ V++ MIS G
Sbjct: 552 LDTNVFVGTALIDMYSKCGEITTAENVFGGMTGKSTVTYTTMISGLG 598
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/346 (23%), Positives = 158/346 (45%), Gaps = 54/346 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W ++ G Y G +E + LF M++ G RP ++ A V D
Sbjct: 180 SWNTLFGWYVKTGRPQEALELFVRMLEDGFRPTPVSFVNIFPAA-------VADDP---- 228
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
S F+ L L +K G E D V +S ID +++ ++ +
Sbjct: 229 -SWPFQ--------LYGLLVKYG---------VEYINDLFVVSSAIDMFSEFGDVQSARR 270
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +K+ WN M+ GY G E +L ++ + ++ + ++ L A +Q
Sbjct: 271 VFDRAAKKNTEVWNTMITGYVQNGQFSEAIDLFSKI-LGSREVPLDVVTFLSALTAASQS 329
Query: 212 KGVKLGKAIHGYVLR--HH----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ V LG+ +HGY+++ H + + + CG V + +F++L +D+V WN++
Sbjct: 330 QDVSLGQQLHGYLIKGMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEKDIVTWNTM 389
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGT--------- 310
++AF+++ ++ L L+ ++ + ++VT+ +VL A L G
Sbjct: 390 VTAFIQNDFDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHGI 449
Query: 311 -GSFVWNALIDMYGRCGAIQKSRKIFVLMPH--KNLVSWNVMISVY 353
G + + LIDMY + G ++ ++++F + ++ V+WN MI+ Y
Sbjct: 450 EGEGLESYLIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNAMIAGY 495
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 129/290 (44%), Gaps = 43/290 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M+ + + E + L Y M G D V A S D ++GK + Y+
Sbjct: 385 TWNTMVTAFIQNDFDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQAHGYL 444
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I EG ++ L+D++ K GR+E+ +F+
Sbjct: 445 IRHGIEGEG-LESYLIDMYAKSGRVEMAQRVFDSF------------------------- 478
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
K ++D V+WNAM+AGY G E+ +L M++ ++P +++L+ VL AC V
Sbjct: 479 ---KNAKRDEVTWNAMIAGYTQSGQPEKA--ILVFRAMLEAGLEPTSVTLASVLPACDPV 533
Query: 212 KG-VKLGKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
G V GK IH + +R ++ + TA CG + + +VF ++ + V + ++
Sbjct: 534 GGGVYSGKQIHCFAVRRCLDTNVFVGTALIDMYSKCGEITTAENVFGGMTGKSTVTYTTM 593
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG 309
IS + G AL L + +KP+ VT +S + AC + +GL
Sbjct: 594 ISGLGQHGFGKKALALFNSMQEKGLKPDAVTFLSAISACNYSGLVDEGLA 643
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 125/253 (49%), Gaps = 32/253 (12%)
Query: 131 LVNNSLIDFYAKC-RY----LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
++ NSL++ YA RY + V F + ++++VSWN + Y G +E L
Sbjct: 143 VLRNSLLNLYASSVRYREARVDVVRRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELF- 201
Query: 186 EMEMIQTDMQPNTISLSGVLAACA--------QVKG--VKLG-KAIHG-YVLRHHIHLST 233
+ M++ +P +S + A Q+ G VK G + I+ +V+ I + +
Sbjct: 202 -VRMLEDGFRPTPVSFVNIFPAAVADDPSWPFQLYGLLVKYGVEYINDLFVVSSAIDMFS 260
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP-NTVTIV 292
G V + VF++ + ++ VWN++I+ +V++GQ +A+DL ++ + P + VT +
Sbjct: 261 EFGDVQSARRVFDRAAKKNTEVWNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFL 320
Query: 293 SVLPACLKLAALPQGLGTGSF------------VWNALIDMYGRCGAIQKSRKIFVLMPH 340
S L A + + G + + NAL+ MY RCG +Q + +F +P
Sbjct: 321 SALTAASQSQDVSLGQQLHGYLIKGMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPE 380
Query: 341 KNLVSWNVMISVY 353
K++V+WN M++ +
Sbjct: 381 KDIVTWNTMVTAF 393
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 100/220 (45%), Gaps = 31/220 (14%)
Query: 165 NAMLAGYALGGFREEVTNLLDEM-EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
NA+L YA +EE L + + ++ + + S L ACA+ + ++LG+++H +
Sbjct: 71 NALLIAYADRALQEEALRLNALLNHAARPPVRSDHYTYSAALTACARSRRLRLGRSVHAH 130
Query: 224 VLRHHIHLSTAC------------------GFVICSCSVFNQLSTRDVVVWNSIISAFVR 265
+LR L V +F+ + R+VV WN++ +V+
Sbjct: 131 MLRRARSLPDTAVLRNSLLNLYASSVRYREARVDVVRRLFDAMPKRNVVSWNTLFGWYVK 190
Query: 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL--------KLAALPQGLG----TGSF 313
+G+ +AL+L ++ +P V+ V++ PA + +L L G F
Sbjct: 191 TGRPQEALELFVRMLEDGFRPTPVSFVNIFPAAVADDPSWPFQLYGLLVKYGVEYINDLF 250
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V ++ IDM+ G +Q +R++F KN WN MI+ Y
Sbjct: 251 VVSSAIDMFSEFGDVQSARRVFDRAAKKNTEVWNTMITGY 290
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 90/230 (39%), Gaps = 53/230 (23%)
Query: 1 MELGIQVHAHLIVCGVE---LCAFL------------GSQLLEVFCN-------WTSMMG 38
+++G Q H +LI G+E L ++L ++ + F N W +M+
Sbjct: 434 LQIGKQAHGYLIRHGIEGEGLESYLIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNAMIA 493
Query: 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
Y G E+ + +F M++ G+ P V AC VG VY F
Sbjct: 494 GYTQSGQPEKAILVFRAMLEAGLEPTSVTLASVLPACDP-----VGGGVYSGKQIHCFAV 548
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
C +D + V +LID Y+KC + + F +
Sbjct: 549 RRC------------------------LDTNVFVGTALIDMYSKCGEITTAENVFGGMTG 584
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
K V++ M++G GF ++ L + M+ + ++P+ ++ ++AC
Sbjct: 585 KSTVTYTTMISGLGQHGFGKKALALFNSMQ--EKGLKPDAVTFLSAISAC 632
>gi|302757275|ref|XP_002962061.1| hypothetical protein SELMODRAFT_76226 [Selaginella moellendorffii]
gi|300170720|gb|EFJ37321.1| hypothetical protein SELMODRAFT_76226 [Selaginella moellendorffii]
Length = 847
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 160/348 (45%), Gaps = 62/348 (17%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT+MM YN LG+ E + LF M +G+ PD F ACS + G ++ ++
Sbjct: 175 WTAMMTAYNQLGHAREALLLFRKMDLQGLEPDRFAFVAAIDACSSIPSLEQGTVLHSRLL 234
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ E C D +V N+L++FYAK + S
Sbjct: 235 ASSVE---------------C---------------DGVVGNALLNFYAKAGLVHESRSL 264
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ-- 210
FS +K K++V+W+A++A YA G E L EM+ + PN ++ +L +C+
Sbjct: 265 FSSMKVKNVVTWSAIVAAYAQNGHHEPAVELF--REMLLDGVAPNKVTFVSLLFSCSHAG 322
Query: 211 -VKGVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWN 257
+K + G+ IH +L+ +++ CG V + +VF+++ R++ WN
Sbjct: 323 LIKDLARGRKIHAEILKSTAAAGDVVVATALVNMYGRCGSVSDAKTVFDEMQHRNITSWN 382
Query: 258 SIISAFVRSGQVVDALDLLRDVIV--ANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV- 314
+++ + + + ++AL R +++ VKP+ +T VS AC + L + + S +
Sbjct: 383 AMLVTYSLNQRSLEALRFFRTMLLEGEGVKPDAITFVSAADACGMMGDLSRAVEIHSRIS 442
Query: 315 --W----------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
W +ALI MYG C + + ++ MP N++SW MI
Sbjct: 443 QSWPSNQTDVVLGSALIKMYGNCRRLADAAQVLDQMPRTNVISWTSMI 490
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 158/354 (44%), Gaps = 62/354 (17%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL--KDYRVGKDVYD- 89
WT ++ + G + E V LF M GV+ D F + +ACS L +GK ++
Sbjct: 64 WTILIVAHTHNGLFFEAVELFREMDVHGVQSDEFTFSAILEACSNLGLAFLSLGKTIHSR 123
Query: 90 -YMISIKFEGNACV--KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL 146
+ +K N V ++D + + G +E + +FE M L
Sbjct: 124 IHQQGLKLTSNPTVICSTAMIDAYAQNGHIEQAAEIFERMQLQVL--------------- 168
Query: 147 KVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
DL++W AM+ Y G E L +M++ ++P+ + +
Sbjct: 169 -----------DPDLIAWTAMMTAYNQLGHAREALLLFRKMDL--QGLEPDRFAFVAAID 215
Query: 207 ACAQVKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVV 255
AC+ + ++ G +H +L + + G V S S+F+ + ++VV
Sbjct: 216 ACSSIPSLEQGTVLHSRLLASSVECDGVVGNALLNFYAKAGLVHESRSLFSSMKVKNVVT 275
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS--- 312
W++I++A+ ++G A++L R++++ V PN VT VS+L +C A L + L G
Sbjct: 276 WSAIVAAYAQNGHHEPAVELFREMLLDGVAPNKVTFVSLLFSC-SHAGLIKDLARGRKIH 334
Query: 313 -------------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V AL++MYGRCG++ ++ +F M H+N+ SWN M+ Y
Sbjct: 335 AEILKSTAAAGDVVVATALVNMYGRCGSVSDAKTVFDEMQHRNITSWNAMLVTY 388
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/404 (20%), Positives = 165/404 (40%), Gaps = 80/404 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G +H+ L+ VE +G+ LL + W++++
Sbjct: 223 LEQGTVLHSRLLASSVECDGVVGNALLNFYAKAGLVHESRSLFSSMKVKNVVTWSAIVAA 282
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSE---LKDYRVGKDVYDYMISIKF 96
Y G++E V LF M+ GV P+ + +CS +KD G+ ++ ++
Sbjct: 283 YAQNGHHEPAVELFREMLLDGVAPNKVTFVSLLFSCSHAGLIKDLARGRKIHAEIL---- 338
Query: 97 EGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKI 156
+ +G D +V +L++ Y +C + + F ++
Sbjct: 339 ------------------KSTAAAG-------DVVVATALVNMYGRCGSVSDAKTVFDEM 373
Query: 157 KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKL 216
+ +++ SWNAML Y+L E M + ++P+ I+ AC + +
Sbjct: 374 QHRNITSWNAMLVTYSLNQRSLEALRFFRTMLLEGEGVKPDAITFVSAADACGMMGDLSR 433
Query: 217 GKAIHGYVLRHH-------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAF 263
IH + + I + C + + V +Q+ +V+ W S+I A
Sbjct: 434 AVEIHSRISQSWPSNQTDVVLGSALIKMYGNCRRLADAAQVLDQMPRTNVISWTSMILAC 493
Query: 264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL-----------GTGS 312
++ A+ + R + + KP+ VT+V+V+ A L L +G+ T +
Sbjct: 494 EQNEDNEAAIRVYRAMQLHGHKPDPVTMVTVIKAAANLHDLKRGIEFHAQAAAFGFATST 553
Query: 313 FVWNALIDMYGRCGAIQKSRKIFVLMPHK---NLVSWNVMISVY 353
V NAL+ +YG G +Q + +F + + ++V+WN M+S +
Sbjct: 554 VVGNALVTLYGTSGDLQAAENVFKELLQQSVEDVVTWNSMLSAW 597
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 127/270 (47%), Gaps = 40/270 (14%)
Query: 118 ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFR 177
ITSG +D + N LI Y +CR + + F + +K++ +W ++ + G
Sbjct: 22 ITSGYH----RDRYLCNLLIQMYGRCRSVHDAIAVFHTVSRKNVFTWTILIVAHTHNGLF 77
Query: 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ--VKGVKLGKAIHGYVLRHHIHLSTAC 235
E L EM++ +Q + + S +L AC+ + + LGK IH + + + L T+
Sbjct: 78 FEAVELFREMDV--HGVQSDEFTFSAILEACSNLGLAFLSLGKTIHSRIHQQGLKL-TSN 134
Query: 236 GFVICSCSVFN--------------------QLSTRDVVVWNSIISAFVRSGQVVDALDL 275
VICS ++ + Q+ D++ W ++++A+ + G +AL L
Sbjct: 135 PTVICSTAMIDAYAQNGHIEQAAEIFERMQLQVLDPDLIAWTAMMTAYNQLGHAREALLL 194
Query: 276 LRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNALIDMYGR 324
R + + ++P+ V+ + AC + +L QG S V NAL++ Y +
Sbjct: 195 FRKMDLQGLEPDRFAFVAAIDACSSIPSLEQGTVLHSRLLASSVECDGVVGNALLNFYAK 254
Query: 325 CGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G + +SR +F M KN+V+W+ +++ Y
Sbjct: 255 AGLVHESRSLFSSMKVKNVVTWSAIVAAYA 284
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/343 (20%), Positives = 138/343 (40%), Gaps = 55/343 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ E + ++ M G +PD V KA + L D + G + +
Sbjct: 485 SWTSMILACEQNEDNEAAIRVYRAMQLHGHKPDPVTMVTVIKAAANLHDLKRGIEFHAQA 544
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F + V L+ L+ G ++ +F+E+ Q +
Sbjct: 545 AAFGFATSTVVGNALVTLYGTSGDLQAAENVFKELLQQSV-------------------- 584
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ- 210
+D+V+WN+ML+ + G + M + P+ + +L ACA
Sbjct: 585 -------EDVVTWNSMLSAWNQNGLPNQALGTFQRM--LHHGRHPDKTTFVNILNACAGD 635
Query: 211 ----VKGVKLGKAIHGYVLRHHI-------HLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
++GVK+ L I H+ + CG + + VF+ L+ ++VV W+++
Sbjct: 636 PSKLLQGVKIHALAAACGLDSDIDVANTLLHMYSRCGNLSRARKVFHALTQKNVVSWSAM 695
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------ 307
+A +G AL R ++ ++PN VT +S+L C + +
Sbjct: 696 AAACAHNGDADGALQAFRGMLHGGIQPNAVTFISILSGCSHTGLMDEAVSYLYAMSSDHN 755
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
L + L+D+ R G ++ ++ +P N V+WN ++
Sbjct: 756 LKPTVQHYACLLDLLARAGKFHRAEELATHLP--NPVAWNSLL 796
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 72/187 (38%), Gaps = 31/187 (16%)
Query: 25 QLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVG 84
Q +E W SM+ +N G + + F M+ G PD + AC+
Sbjct: 582 QSVEDVVTWNSMLSAWNQNGLPNQALGTFQRMLHHGRHPDKTTFVNILNACA-------- 633
Query: 85 KDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCR 144
D + +K L CG +D D V N+L+ Y++C
Sbjct: 634 GDPSKLLQGVKIHA----------LAAACG-----------LDSDIDVANTLLHMYSRCG 672
Query: 145 YLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGV 204
L + F + QK++VSW+AM A A G + M+ +QPN ++ +
Sbjct: 673 NLSRARKVFHALTQKNVVSWSAMAAACAHNGDADGALQAF--RGMLHGGIQPNAVTFISI 730
Query: 205 LAACAQV 211
L+ C+
Sbjct: 731 LSGCSHT 737
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 36/177 (20%)
Query: 211 VKGVKLGKAIH------GYVLRHH-----IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
K + G+A+H GY + I + C V + +VF+ +S ++V W +
Sbjct: 8 AKNLDAGRAVHLQMITSGYHRDRYLCNLLIQMYGRCRSVHDAIAVFHTVSRKNVFTWTIL 67
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC--LKLAALP-----------Q 306
I A +G +A++L R++ V V+ + T ++L AC L LA L Q
Sbjct: 68 IVAHTHNGLFFEAVELFREMDVHGVQSDEFTFSAILEACSNLGLAFLSLGKTIHSRIHQQ 127
Query: 307 GLGTGS----FVWNALIDMYGRCGAIQKSRKIF------VLMPHKNLVSWNVMISVY 353
GL S A+ID Y + G I+++ +IF VL P +L++W M++ Y
Sbjct: 128 GLKLTSNPTVICSTAMIDAYAQNGHIEQAAEIFERMQLQVLDP--DLIAWTAMMTAY 182
>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
Length = 688
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 83/339 (24%), Positives = 161/339 (47%), Gaps = 33/339 (9%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ Y G E + LF M+ G PD V AC+ L R G+ V+ +M
Sbjct: 219 SWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHM 278
Query: 92 ISI-KFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNN-SLIDFYAKCRYLKVS 149
+ + + + L+D++ KCGR +F+ M +V+ S++ YAK ++ +
Sbjct: 279 VKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDA 338
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
FS++ +K++++WN ++A YA G EE L +++ + + P + VL AC
Sbjct: 339 QVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLF--VQLKRDSIWPTHYTYGNVLNACG 396
Query: 210 QVKGVKLGKAIHGYVLRHH-----------------IHLSTACGFVICSCSVFNQLSTRD 252
+ ++LG+ H +VL+ + + G + VF +++ RD
Sbjct: 397 NIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARD 456
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------ 306
V WN++I + ++G+ DAL L ++ +N P++VT++ VL AC + +
Sbjct: 457 NVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRYFH 516
Query: 307 ------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
G+ + ++D+ GR G ++++ ++ MP
Sbjct: 517 SMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMP 555
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 131/273 (47%), Gaps = 24/273 (8%)
Query: 106 LLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
L+ + + GR+ +F+E+ ++ N+L+ YA+ + F I D S+
Sbjct: 58 LVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSY 117
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
NA++A A G L M D N S + L+ACA K + G+ +HG V
Sbjct: 118 NAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASALSACAAEKDSRTGEQVHGLV 177
Query: 225 LR----HHIHLSTACGFVICSCS-------VFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
R +H+ +A + C VF+ + R+VV WNS+I+ + ++G V +AL
Sbjct: 178 ARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEAL 237
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNALIDM 321
L +++ A P+ VT+ SV+ AC LAA +G L + NAL+DM
Sbjct: 238 MLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDM 297
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
Y +CG ++R IF MP +++VS +++ Y
Sbjct: 298 YAKCGRTWEARCIFDSMPSRSIVSETSILTGYA 330
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 131/287 (45%), Gaps = 62/287 (21%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
D + ++L+D YAKC + + F + ++++VSWN+++ Y G E L +
Sbjct: 184 DDVHIRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLF--V 241
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV-----LRHHIHLSTA-------C 235
EM+ P+ ++LS V++ACA + + G+ +H ++ LR + L+ A C
Sbjct: 242 EMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKC 301
Query: 236 G---------------FVICSCS----------------VFNQLSTRDVVVWNSIISAFV 264
G ++ S VF+Q+ ++V+ WN +I+A+
Sbjct: 302 GRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYA 361
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------------LG 309
++G+ +A+ L + ++ P T +VL AC +A L G G
Sbjct: 362 QNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFG 421
Query: 310 TGS--FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
S FV N+L+DMY + G+I K+F M ++ VSWN MI Y
Sbjct: 422 PESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYA 468
>gi|302761660|ref|XP_002964252.1| hypothetical protein SELMODRAFT_82268 [Selaginella moellendorffii]
gi|300167981|gb|EFJ34585.1| hypothetical protein SELMODRAFT_82268 [Selaginella moellendorffii]
Length = 740
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 98/353 (27%), Positives = 161/353 (45%), Gaps = 55/353 (15%)
Query: 25 QLLEVFCN-----WTSMMGMYNVLGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSEL 78
++ EV N WT+M+ Y G+ + L+ M ++K VRPD V ACS L
Sbjct: 266 RVFEVMANKDVVSWTAMITAYAQNGHERLALELYRRMELEKRVRPDRVTYAAVLGACSGL 325
Query: 79 KDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLID 138
D GK++Y + S F+ +A +K SL+
Sbjct: 326 GDLSTGKEIYARVCSSDFDVDAALK------------------------------TSLVG 355
Query: 139 FYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT 198
Y KC L+ + F I +D +++NAMLA YA G ++ NL +M M ++P
Sbjct: 356 LYGKCHCLEDAKEVFDSISSRDRLAYNAMLAAYAQNGHPDDALNLYRQM-MDLEGVEPTD 414
Query: 199 ISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHL-----STACGF------VICSCSVFNQ 247
S + L AC +K + GK++HG + I L +T GF + + +F Q
Sbjct: 415 TSFAVALMACTALKDLVTGKSLHGRIQVAGIKLDEVLATTLVGFYGEVGSLEEAERIFEQ 474
Query: 248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-- 305
+ +DV ++++I A+ ++G A+ + ++ +KP+ V +SVL AC A
Sbjct: 475 MPVKDVFSYSAMIGAYSQNGCEGRAMTIYAEMDQQGIKPDEVAFISVLSACSSNLATEVH 534
Query: 306 -----QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G + AL+ MY + G +++SR+IF M ++ VSW MIS +
Sbjct: 535 TEIVHAGFEADGALGTALVCMYAKSGNLEESRRIFGAMKSRDSVSWTAMISAF 587
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 130/262 (49%), Gaps = 26/262 (9%)
Query: 114 GRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYAL 173
GR + + +D++ L+ NSLI Y KC L + F +++KD V+WN M+ +
Sbjct: 29 GRQLHAAAIARRLDRETLLANSLIAMYGKCHSLAEAERLFHSLERKDPVTWNTMIGAFTH 88
Query: 174 GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK----AIHGYVLRHHI 229
G +L M N+++ GVL AC+ + + LG+ +I G R +
Sbjct: 89 NGQPRLAVDLYARM----GSGDRNSVTFLGVLEACSALGDLDLGRTVDSSIAGSEWRDDV 144
Query: 230 HLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
+ TA C + + F+ + ++VV WN++++++ R+G AL LR++ +
Sbjct: 145 VVGTAVVGMYGRCRSIEEARQRFDSMPVKNVVSWNALVTSYARNGHPCGALRALREMDLD 204
Query: 283 NVKPNTVTIVSVLPACLKLAALPQGLG-----------TGSFVWNALIDMYGRCGAIQKS 331
K N VT + V+ +L +L G G+ + NALI MYG+ +++S
Sbjct: 205 GTKLNPVTFLLVIEVATQLGSLSLGRSIHLRITRGGDGGGTRLENALISMYGKLENLEES 264
Query: 332 RKIFVLMPHKNLVSWNVMISVY 353
++F +M +K++VSW MI+ Y
Sbjct: 265 LRVFEVMANKDVVSWTAMITAY 286
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 94/380 (24%), Positives = 167/380 (43%), Gaps = 50/380 (13%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRP 63
G Q+HA I ++ L + S++ MY E LF+ + R
Sbjct: 29 GRQLHAAAIARRLDRETLLAN----------SLIAMYGKCHSLAEAERLFHSL----ERK 74
Query: 64 DHFVCPKVYKACSELKDYRVGKDVYDYM-----ISIKFEG--NACVKRPLLDLFIKCGRM 116
D + A + R+ D+Y M S+ F G AC LDL GR
Sbjct: 75 DPVTWNTMIGAFTHNGQPRLAVDLYARMGSGDRNSVTFLGVLEACSALGDLDL----GRT 130
Query: 117 EITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGF 176
+S E D +V +++ Y +CR ++ + +F + K++VSWNA++ YA G
Sbjct: 131 VDSSIAGSEWRDDVVVGTAVVGMYGRCRSIEEARQRFDSMPVKNVVSWNALVTSYARNGH 190
Query: 177 REEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACG 236
L EM++ T + P T L V+ Q+ + LG++IH + R T
Sbjct: 191 PCGALRALREMDLDGTKLNPVTFLL--VIEVATQLGSLSLGRSIHLRITRGGDGGGTRLE 248
Query: 237 FVIC-----------SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV-IVANV 284
+ S VF ++ +DVV W ++I+A+ ++G AL+L R + + V
Sbjct: 249 NALISMYGKLENLEESLRVFEVMANKDVVSWTAMITAYAQNGHERLALELYRRMELEKRV 308
Query: 285 KPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRK 333
+P+ VT +VL AC L L G + + +L+ +YG+C ++ +++
Sbjct: 309 RPDRVTYAAVLGACSGLGDLSTGKEIYARVCSSDFDVDAALKTSLVGLYGKCHCLEDAKE 368
Query: 334 IFVLMPHKNLVSWNVMISVY 353
+F + ++ +++N M++ Y
Sbjct: 369 VFDSISSRDRLAYNAMLAAY 388
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 11/79 (13%)
Query: 286 PNTVTIVSVLPAC-----------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKI 334
P+ T+VS + AC L AA+ + L + + N+LI MYG+C ++ ++ ++
Sbjct: 8 PHRTTLVSAISACASSGNLARGRQLHAAAIARRLDRETLLANSLIAMYGKCHSLAEAERL 67
Query: 335 FVLMPHKNLVSWNVMISVY 353
F + K+ V+WN MI +
Sbjct: 68 FHSLERKDPVTWNTMIGAF 86
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 65/325 (20%), Positives = 126/325 (38%), Gaps = 84/325 (25%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLL----------------------EVFCNWTSMMGMYN 41
G +H + V G++L L + L+ +VF ++++M+G Y+
Sbjct: 433 GKSLHGRIQVAGIKLDEVLATTLVGFYGEVGSLEEAERIFEQMPVKDVF-SYSAMIGAYS 491
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G + ++ M +G++PD V ACS + +V+ ++ FE +
Sbjct: 492 QNGCEGRAMTIYAEMDQQGIKPDEVAFISVLSACSS----NLATEVHTEIVHAGFEADGA 547
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ L+ ++ K G +E + +F M K +D
Sbjct: 548 LGTALVCMYAKSGNLEESRRIFGAM------------------------------KSRDS 577
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSW AM++ +A G E L M + D + +T L+ +L + +Q GV +
Sbjct: 578 VSWTAMISAFARHGC--EAKLLFQGMALDGIDAKGST--LTSMLVSYSQ-SGVDAAR--- 629
Query: 222 GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281
GF + F + ++ ++ RSG+V +A +L+ +
Sbjct: 630 --------------GFFVAMQGDFGTCPAAE--HYSCLVDLLARSGRVGEAKELVDSM-- 671
Query: 282 ANVKPNTVTIVSVLPACLKLAALPQ 306
++P+ V +++L AC L Q
Sbjct: 672 -PLEPDFVPWMTLLGACKTHGDLEQ 695
>gi|302772569|ref|XP_002969702.1| hypothetical protein SELMODRAFT_92471 [Selaginella moellendorffii]
gi|300162213|gb|EFJ28826.1| hypothetical protein SELMODRAFT_92471 [Selaginella moellendorffii]
Length = 689
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 163/349 (46%), Gaps = 61/349 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT ++ G E + L MI +G RPD + C+ D GK + ++
Sbjct: 25 SWTMILAACARNGRNLEALLLVRRMIGEGARPDVVCFVTILDLCAATADLEQGKVAHAWI 84
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
++ E ++ V + N+LI+ Y KCR L ++
Sbjct: 85 LACGVESSSRV-----------------------------LGNALINMYGKCRNLDLARA 115
Query: 152 KFSKIKQ----KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
+F +++ +D+V+WN++LA + G+ EE L EME+ ++P++++L+ VL +
Sbjct: 116 QFDRMEHQDHGRDVVTWNSLLAAFTHNGYLEEAARLFQEMEV--EGIKPSSVTLTCVLES 173
Query: 208 CAQVKGVKLGKAIHGYVL-----------RHHIHLSTACGFVICSCSVFNQLSTRDVVVW 256
C+ G + GK H VL + + CG + S VF + +D++ W
Sbjct: 174 CS---GDRQGKLFHDRVLDLGLQGDEFLMNSLVKMYARCGRLEESRLVFRAIDQKDIISW 230
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANV-KPNTVTIVSVLPACLKLAAL----------- 304
N +IS R G +A++LLR++ + +P+ VT +SV+ AC L L
Sbjct: 231 NVMISLEARLGSSEEAVELLREIDLEGFPEPDEVTFISVVDACSCLGDLDLCFTIQELVS 290
Query: 305 PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G + NA+++M+G+ G + +R F +P KN+VSWN +IS Y
Sbjct: 291 SAGFDDDLLLGNAVVNMFGKSGCLDAARATFDRLPVKNVVSWNCLISGY 339
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 107/401 (26%), Positives = 178/401 (44%), Gaps = 82/401 (20%)
Query: 1 MELGIQVHAHLIVCGVELCA-FLGSQLLEVF-------------------------CNWT 34
+E G HA ++ CGVE + LG+ L+ ++ W
Sbjct: 74 LEQGKVAHAWILACGVESSSRVLGNALINMYGKCRNLDLARAQFDRMEHQDHGRDVVTWN 133
Query: 35 SMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI 94
S++ + GY EE LF M +G++P V ++CS R GK +D ++ +
Sbjct: 134 SLLAAFTHNGYLEEAARLFQEMEVEGIKPSSVTLTCVLESCS---GDRQGKLFHDRVLDL 190
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFS 154
+G+ +FL+N SL+ YA+C L+ S F
Sbjct: 191 GLQGD-----------------------------EFLMN-SLVKMYARCGRLEESRLVFR 220
Query: 155 KIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGV 214
I QKD++SWN M++ A G EE LL E+++ + +P+ ++ V+ AC+ + +
Sbjct: 221 AIDQKDIISWNVMISLEARLGSSEEAVELLREIDL-EGFPEPDEVTFISVVDACSCLGDL 279
Query: 215 KLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAF 263
L I V +++ G + + + F++L ++VV WN +IS +
Sbjct: 280 DLCFTIQELVSSAGFDDDLLLGNAVVNMFGKSGCLDAARATFDRLPVKNVVSWNCLISGY 339
Query: 264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGS 312
++ Q L+L R + VK N+VT VS+L AC + AL GL +
Sbjct: 340 AQNLQGRRCLELFRQMDQEGVKANSVTFVSLLDACSTIPALDFGRELHLRITAAGLELHT 399
Query: 313 FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V ALI+MYG+C +Q ++++ LV+ NVMIS Y
Sbjct: 400 VVATALINMYGKCEELQFAQELLERYQSTGLVACNVMISAY 440
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 119/238 (50%), Gaps = 26/238 (10%)
Query: 139 FYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT 198
+ KC ++V+ F + + +L SW +LA A G E LL MI +P+
Sbjct: 1 MFGKCGDIEVAREIFHGLWRPNLFSWTMILAACARNGRNLEA--LLLVRRMIGEGARPDV 58
Query: 199 ISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST------------ACGFVICSCSVFN 246
+ +L CA ++ GK H ++L + S+ C + + + F+
Sbjct: 59 VCFVTILDLCAATADLEQGKVAHAWILACGVESSSRVLGNALINMYGKCRNLDLARAQFD 118
Query: 247 QLS----TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC---- 298
++ RDVV WNS+++AF +G + +A L +++ V +KP++VT+ VL +C
Sbjct: 119 RMEHQDHGRDVVTWNSLLAAFTHNGYLEEAARLFQEMEVEGIKPSSVTLTCVLESCSGDR 178
Query: 299 ----LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
L GL F+ N+L+ MY RCG +++SR +F + K+++SWNVMIS+
Sbjct: 179 QGKLFHDRVLDLGLQGDEFLMNSLVKMYARCGRLEESRLVFRAIDQKDIISWNVMISL 236
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 130/285 (45%), Gaps = 37/285 (12%)
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
+AC P LD F + + IT+ E +V +LI+ Y KC L+ + + +
Sbjct: 372 DACSTIPALD-FGRELHLRITAAGLE---LHTVVATALINMYGKCEELQFAQELLERYQS 427
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
LV+ N M++ YA G E L M++ ++ + ++ G L ACA K G+
Sbjct: 428 TGLVACNVMISAYAQVGHSERAMKFLHGMDL--AGVKADVVTYIGALEACACSKDFSKGQ 485
Query: 219 AIHGYVLRHH------------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
A++ V+ + + + CG V + + LS+R ++ W S++
Sbjct: 486 AVYDRVVSTGWISQLLSSWTSDAIKGALLGMYSKCGCVDDALAALQSLSSRGLLAWTSML 545
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL----------GT 310
+A+ G+ +AL +L + V P+ V +V+ AC L + L GT
Sbjct: 546 AAYAHVGRASEALRVLGQMQHDGVVPDDVAFSAVVFACSHAGLLHEALVRLAWVYGDYGT 605
Query: 311 --GSFVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
G+ ++ ++D+ GR G +Q++ ++ MP++ + ++W ++
Sbjct: 606 AMGAGLYECVVDVLGRMGRLQEAEELMHAMPYEPDSLAWMALLGA 650
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/343 (19%), Positives = 132/343 (38%), Gaps = 74/343 (21%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF-----------------------CNWTSMM 37
++ G ++H + G+EL + + L+ ++ CN M+
Sbjct: 380 LDFGRELHLRITAAGLELHTVVATALINMYGKCEELQFAQELLERYQSTGLVACN--VMI 437
Query: 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
Y +G+ E + + M GV+ D +AC+ KD+ G+ VYD ++S +
Sbjct: 438 SAYAQVGHSERAMKFLHGMDLAGVKADVVTYIGALEACACSKDFSKGQAVYDRVVSTGW- 496
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
S L D + +L+ Y+KC + + +
Sbjct: 497 ---------------------ISQLLSSWTSD-AIKGALLGMYSKCGCVDDALAALQSLS 534
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+ L++W +MLA YA G E +L +M+ + P+ ++ S V+ AC+ +
Sbjct: 535 SRGLLAWTSMLAAYAHVGRASEALRVLGQMQ--HDGVVPDDVAFSAVVFACSHAGLLHEA 592
Query: 218 KAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLR 277
+V + TA G + C ++ R G++ +A +L+
Sbjct: 593 LVRLAWVYGDY---GTAMGAGLYEC----------------VVDVLGRMGRLQEAEELMH 633
Query: 278 DVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALID 320
+ +P+++ +++L AC L +G T AL+D
Sbjct: 634 AM---PYEPDSLAWMALLGACTVHGDLERGARTAGH--EALLD 671
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 99/361 (27%), Positives = 166/361 (45%), Gaps = 87/361 (24%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G + + V LF + ++G+ PD+F P V+KA L + R G+ VY +++ E + V
Sbjct: 111 GSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVVKSGLEFDTYVC 170
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L+D++ + GR++ +FEEM Q +V+ N LI Y KCR + + F +++Q
Sbjct: 171 NSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQ---- 226
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
Q+ ++PN ++ L+AC +K ++LGK IH
Sbjct: 227 ----------------------------QSSLRPNEATVVSTLSACIALKMLELGKEIHR 258
Query: 223 YVLRHHI------------------HLSTA-------------------CGFVIC----- 240
YV R + HLS A G+V C
Sbjct: 259 YV-REQLGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDE 317
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ +F + RDVV+W ++I+ +V+ + DA+ L R++ + V P+ T+V++L C +
Sbjct: 318 ARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQ 377
Query: 301 LAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L L QG + + V ALI+MY +CG I+KS +IF + K+ SW +
Sbjct: 378 LGTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSI 437
Query: 350 I 350
I
Sbjct: 438 I 438
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/353 (26%), Positives = 166/353 (47%), Gaps = 41/353 (11%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W ++ Y YE+ V++F M + +RP+ AC LK +GK+++ Y
Sbjct: 200 SWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRY 259
Query: 91 M-----ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCR 144
+ +IK GNA L+D++ KCG + I +F +M + + S++ Y C
Sbjct: 260 VREQLGFTIKI-GNA-----LVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCG 313
Query: 145 YLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGV 204
L + F + +D+V W AM+ GY ++ L EM++ + + P+ +L +
Sbjct: 314 QLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKR--VSPDRFTLVAL 371
Query: 205 LAACAQVKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDV 253
L CAQ+ ++ GK IHGY+ + I + CGF+ S +FN L +D
Sbjct: 372 LTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDT 431
Query: 254 VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG---- 309
W SII +G+ AL+L +++ VKP+ +T + VL AC + +G
Sbjct: 432 ASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRS 491
Query: 310 -TGSFV-------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
T + + LID+ GR G + ++ ++ P+ V+ V++ +YG
Sbjct: 492 MTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPN---VNNEVIVPLYG 541
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 24/160 (15%)
Query: 218 KAIHGYVLRHHIHLS--TACGFVIC-----------SCSVFNQLSTRDVVVWNSIISAFV 264
K I +LR H S T F++C + +FN + + ++N +I AF
Sbjct: 49 KQIQTQILRTGFHQSGDTLNKFMVCCTDPSIGNLHYAERIFNYIDIPGLFIYNLVIKAFT 108
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA--CLKLA---------ALPQGLGTGSF 313
++G A+ L R + + P+ T V A CL + GL ++
Sbjct: 109 KNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVVKSGLEFDTY 168
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V N+L+DMY G +Q R++F MP +++VSWNV+IS Y
Sbjct: 169 VCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGY 208
>gi|255559100|ref|XP_002520572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540232|gb|EEF41805.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 695
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 127/244 (52%), Gaps = 25/244 (10%)
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
N+++ Y++C ++ S F K+ +KD+VSWN M++G+ G EE L+ EM+ +
Sbjct: 243 NAILVMYSRCNSVQTSFEVFEKMPEKDVVSWNTMISGFIQNGLDEEGLMLVYEMQ--KQG 300
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS----------TACGFVICSCS 243
++++++ +L+A + ++ ++GK H Y++RH I G + S
Sbjct: 301 FIADSVTVTSLLSAASNLRNREIGKQTHAYLIRHGIKFDGMDSYLIDMYAKSGLIRISQR 360
Query: 244 VF--NQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
VF N + RD WN++I+ + ++G V A R ++ N++PN VT+ S+LPAC L
Sbjct: 361 VFENNNIQNRDQATWNAVIAGYTQNGLVEQAFITFRLMLEQNLRPNAVTLASILPACSSL 420
Query: 302 AALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
++ G L FV AL+DMY + GAI + +F +N V++ MI
Sbjct: 421 GSINLGKQLHGVSIRYSLDQNIFVRTALVDMYSKSGAINYAESVFTQSSERNSVTYTTMI 480
Query: 351 SVYG 354
YG
Sbjct: 481 LGYG 484
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 140/290 (48%), Gaps = 46/290 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ + G EE + L Y M +G D + A S L++ +GK + Y+
Sbjct: 272 SWNTMISGFIQNGLDEEGLMLVYEMQKQGFIADSVTVTSLLSAASNLRNREIGKQTHAYL 331
Query: 92 I--SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
I IKF+G + L+D++ K G + I+ +FE NN+
Sbjct: 332 IRHGIKFDG---MDSYLIDMYAKSGLIRISQRVFE--------NNN-------------- 366
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
I+ +D +WNA++AGY G E+ + M++ +++PN ++L+ +L AC+
Sbjct: 367 ------IQNRDQATWNAVIAGYTQNGLVEQA--FITFRLMLEQNLRPNAVTLASILPACS 418
Query: 210 QVKGVKLGKAIHG----YVLRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNS 258
+ + LGK +HG Y L +I + TA G + + SVF Q S R+ V + +
Sbjct: 419 SLGSINLGKQLHGVSIRYSLDQNIFVRTALVDMYSKSGAINYAESVFTQSSERNSVTYTT 478
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
+I + + G +AL L + + ++P+ +T V+VL AC + +GL
Sbjct: 479 MILGYGQHGMGENALSLFHSMKKSGIQPDAITFVAVLSACSYAGLVDEGL 528
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 152/345 (44%), Gaps = 54/345 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y Y E + F LM+ G++P V+ A S + D++
Sbjct: 68 WNTMVSWYVKTERYVEAIRQFRLMMKWGIKPSPVSFVNVFPAISSVGDFK---------- 117
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
NA V L + +K G E D V +S I YA+ L +
Sbjct: 118 ------NANV---LYGMLLKLGN---------EYANDLFVVSSAISMYAELGCLDLCRKV 159
Query: 153 FSKIKQKDLVSWNAMLAGYAL-GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +K WN M+ G+ F E V L M+ T + + ++ L A +Q+
Sbjct: 160 FDSCLEKSAEVWNTMIGGHIQNNSFLEGVYLFLQAMKTEHTIL--DDVTFLSALTAVSQL 217
Query: 212 KGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSII 260
+ + LG+ +H + +++H LS + C V S VF ++ +DVV WN++I
Sbjct: 218 QCLGLGQQMHAFTMKNHTVLSVTVLNAILVMYSRCNSVQTSFEVFEKMPEKDVVSWNTMI 277
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW----- 315
S F+++G + L L+ ++ ++VT+ S+L A L G T +++
Sbjct: 278 SGFIQNGLDEEGLMLVYEMQKQGFIADSVTVTSLLSAASNLRNREIGKQTHAYLIRHGIK 337
Query: 316 -----NALIDMYGRCGAIQKSRKIFV--LMPHKNLVSWNVMISVY 353
+ LIDMY + G I+ S+++F + +++ +WN +I+ Y
Sbjct: 338 FDGMDSYLIDMYAKSGLIRISQRVFENNNIQNRDQATWNAVIAGY 382
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 108/236 (45%), Gaps = 29/236 (12%)
Query: 142 KCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME-MIQTDMQPNTIS 200
+ R ++ H F + ++D+++WN M++ Y E + + M++ ++P+ +S
Sbjct: 46 RSRLSRLLHKVFKTMHKRDVIAWNTMVSWYVK---TERYVEAIRQFRLMMKWGIKPSPVS 102
Query: 201 LSGVLAACAQVKGVKLGKAIHG-------------YVLRHHIHLSTACGFVICSCSVFNQ 247
V A + V K ++G +V+ I + G + VF+
Sbjct: 103 FVNVFPAISSVGDFKNANVLYGMLLKLGNEYANDLFVVSSAISMYAELGCLDLCRKVFDS 162
Query: 248 LSTRDVVVWNSIISAFVRSGQVVDALDL-LRDVIVANVKPNTVTIVSVLPACLKLAALPQ 306
+ VWN++I +++ ++ + L L+ + + + VT +S L A +L L
Sbjct: 163 CLEKSAEVWNTMIGGHIQNNSFLEGVYLFLQAMKTEHTILDDVTFLSALTAVSQLQCLGL 222
Query: 307 GLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
G +F V NA++ MY RC ++Q S ++F MP K++VSWN MIS
Sbjct: 223 GQQMHAFTMKNHTVLSVTVLNAILVMYSRCNSVQTSFEVFEKMPEKDVVSWNTMIS 278
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/298 (21%), Positives = 116/298 (38%), Gaps = 70/298 (23%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC-----------------------NWTSMMG 38
E+G Q HA+LI G++ + S L++++ W +++
Sbjct: 322 EIGKQTHAYLIRHGIKFDG-MDSYLIDMYAKSGLIRISQRVFENNNIQNRDQATWNAVIA 380
Query: 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
Y G E+ F LM+++ +RP+ + ACS L +GK ++ I +
Sbjct: 381 GYTQNGLVEQAFITFRLMLEQNLRPNAVTLASILPACSSLGSINLGKQLHGVSIRYSLDQ 440
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
N V+ L+D++ K G + + F++ +
Sbjct: 441 NIFVRTALVDMYSKSGAINYAESV------------------------------FTQSSE 470
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
++ V++ M+ GY G E +L M+ ++ +QP+ I+ VL+AC+ V G
Sbjct: 471 RNSVTYTTMILGYGQHGMGENALSLFHSMK--KSGIQPDAITFVAVLSACSYAGLVDEGL 528
Query: 219 AIHGYVLRH-HIHLSTA-----------CGFVICSCSVFNQLSTRDVV--VWNSIISA 262
I + R I STA G VI + QL V +W S++ A
Sbjct: 529 RIFESMKRDFKIQPSTAHYCCVADMLGRVGRVIEAYEFVKQLGEEGHVIEIWGSLLGA 586
>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 631
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 98/382 (25%), Positives = 169/382 (44%), Gaps = 77/382 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF--CN-------------------WTSMMGM 39
+E G Q+HA L G+ L ++L+ + CN W ++
Sbjct: 74 LEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLFDKIPKGNLFLWNVLIRA 133
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G +E ++L++ M++ G++PD+F P V KACS L G+ +++ +I +E
Sbjct: 134 YAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRVIHERVIRSGWE-- 191
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+D V +L+D YAKC + + F KI +
Sbjct: 192 ----------------------------RDVFVGAALVDMYAKCGCVVDARHVFDKIVDR 223
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D V WN+MLA YA G +E +L EM ++P +L V+++ A + + G+
Sbjct: 224 DAVLWNSMLAAYAQNGHPDESLSLC--CEMAAKGVRPTEATLVTVISSSADIACLPHGRE 281
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IHG+ RH I + CG V +C +F +L + VV WN+II+ + G
Sbjct: 282 IHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGL 341
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WN 316
V+ALDL + ++ +P+ +T V L AC + L +G + + +
Sbjct: 342 AVEALDLF-ERMMKEAQPDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYT 400
Query: 317 ALIDMYGRCGAIQKSRKIFVLM 338
++D+ G CG + ++ + M
Sbjct: 401 CMVDLLGHCGQLDEAYDLIRQM 422
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 127/241 (52%), Gaps = 24/241 (9%)
Query: 136 LIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ 195
L++FY+ C L+ +H F KI + +L WN ++ YA G E +L +M ++ ++
Sbjct: 99 LVNFYSVCNSLRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQM--LEYGLK 156
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSV 244
P+ +L VL AC+ + + G+ IH V+R + + CG V+ + V
Sbjct: 157 PDNFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHV 216
Query: 245 FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL 304
F+++ RD V+WNS+++A+ ++G ++L L ++ V+P T+V+V+ + +A L
Sbjct: 217 FDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACL 276
Query: 305 PQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
P G F W ALIDMY +CG+++ + +F + K +VSWN +I+ Y
Sbjct: 277 PHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGY 336
Query: 354 G 354
Sbjct: 337 A 337
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 85/373 (22%), Positives = 159/373 (42%), Gaps = 90/373 (24%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G +H +I G E F+G+ L++++ W SM+ Y
Sbjct: 178 GRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQ 237
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G+ +E ++L M KGVRP V + +++ G++++ + F+ N V
Sbjct: 238 NGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKV 297
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
K +LID YAKC +KV+ F ++++K +V
Sbjct: 298 K------------------------------TALIDMYAKCGSVKVACVLFERLREKRVV 327
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SWNA++ GYA+ G E LD E + + QP+ I+ G LAAC++ + + G+A++
Sbjct: 328 SWNAIITGYAMHGLAVEA---LDLFERMMKEAQPDHITFVGALAACSRGRLLDEGRALYN 384
Query: 223 YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
++R C + V + ++ GQ+ +A DL+R +
Sbjct: 385 LMVR--------------DCRI-----NPTVEHYTCMVDLLGHCGQLDEAYDLIRQM--- 422
Query: 283 NVKPNTVTIVSVLPAC-----LKLAALP-------QGLGTGSFVWNALIDMYGRCGAIQK 330
+V P++ ++L +C ++LA + + +G++V L +MY + G +
Sbjct: 423 DVMPDSGVWGALLNSCKTHGNVELAEVALEKLIELEPDDSGNYV--ILANMYAQSGKWEG 480
Query: 331 SRKIFVLMPHKNL 343
++ LM K +
Sbjct: 481 VARLRQLMIDKGI 493
>gi|115460348|ref|NP_001053774.1| Os04g0602600 [Oryza sativa Japonica Group]
gi|38344148|emb|CAE01824.2| OSJNBa0041A02.15 [Oryza sativa Japonica Group]
gi|113565345|dbj|BAF15688.1| Os04g0602600 [Oryza sativa Japonica Group]
gi|125549608|gb|EAY95430.1| hypothetical protein OsI_17272 [Oryza sativa Indica Group]
Length = 804
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 165/347 (47%), Gaps = 56/347 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRP-DHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M+ Y G + E ++LF ++ P D A S+ +D +G+ ++ Y+
Sbjct: 283 WNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSLGQQLHGYL 342
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I G+ + ++ N+L+ Y++C ++ +
Sbjct: 343 IK---------------------------GMHRTLP--VILGNALVVMYSRCGNVQTAFD 373
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +KD+V+WN M+ + F ++ LL EM ++ ++++L+ VL+A +
Sbjct: 374 LFDRLPEKDIVTWNTMVTAFIQNDF--DLEGLLLVYEMQKSGFAADSVTLTAVLSASSNT 431
Query: 212 KGVKLGKAIHGYVLRHHIH----------LSTACGFVICSCSVFNQL--STRDVVVWNSI 259
+++GK HGY++RH I + G V + VF+ + RD V WN++
Sbjct: 432 GDLQIGKQAHGYLIRHGIEGEGLESYLIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNAM 491
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA------------ALPQG 307
I+ + +SGQ A+ + R ++ A ++P +VT+ SVLPAC + A+ +
Sbjct: 492 IAGYTQSGQPEKAILVFRAMLEAGLEPTSVTLASVLPACDPVGGGVYSGKQIHCFAVRRC 551
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L T FV ALIDMY +CG I + +F M K+ V++ MIS G
Sbjct: 552 LDTNVFVGTALIDMYSKCGEITTAENVFGGMTGKSTVTYTTMISGLG 598
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/346 (23%), Positives = 158/346 (45%), Gaps = 54/346 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W ++ G Y G +E + LF M++ G RP ++ A V D
Sbjct: 180 SWNTLFGWYVKTGRPQEALELFVRMLEDGFRPTPVSFVNIFPAA-------VADDP---- 228
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
S F+ L L +K G E D V +S ID +++ ++ +
Sbjct: 229 -SWPFQ--------LYGLLVKYG---------VEYINDLFVVSSAIDMFSEFGDVQSARR 270
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +K+ WN M+ GY G E +L ++ + ++ + ++ L A +Q
Sbjct: 271 VFDRAAKKNTEVWNTMITGYVQNGQFSEAIDLFSKI-LGSREVPLDVVTFLSALTAASQS 329
Query: 212 KGVKLGKAIHGYVLR--HH----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ V LG+ +HGY+++ H + + + CG V + +F++L +D+V WN++
Sbjct: 330 QDVSLGQQLHGYLIKGMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEKDIVTWNTM 389
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGT--------- 310
++AF+++ ++ L L+ ++ + ++VT+ +VL A L G
Sbjct: 390 VTAFIQNDFDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHGI 449
Query: 311 -GSFVWNALIDMYGRCGAIQKSRKIFVLMPH--KNLVSWNVMISVY 353
G + + LIDMY + G ++ ++++F + ++ V+WN MI+ Y
Sbjct: 450 EGEGLESYLIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNAMIAGY 495
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 129/290 (44%), Gaps = 43/290 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M+ + + E + L Y M G D V A S D ++GK + Y+
Sbjct: 385 TWNTMVTAFIQNDFDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQAHGYL 444
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I EG ++ L+D++ K GR+E+ +F+
Sbjct: 445 IRHGIEGEG-LESYLIDMYAKSGRVEMAQRVFDSF------------------------- 478
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
K ++D V+WNAM+AGY G E+ +L M++ ++P +++L+ VL AC V
Sbjct: 479 ---KNAKRDEVTWNAMIAGYTQSGQPEKA--ILVFRAMLEAGLEPTSVTLASVLPACDPV 533
Query: 212 KG-VKLGKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
G V GK IH + +R ++ + TA CG + + +VF ++ + V + ++
Sbjct: 534 GGGVYSGKQIHCFAVRRCLDTNVFVGTALIDMYSKCGEITTAENVFGGMTGKSTVTYTTM 593
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG 309
IS + G AL L + +KP+ VT +S + AC + +GL
Sbjct: 594 ISGLGQHGFGKKALALFNSMQEKGLKPDAVTFLSAISACNYSGLVDEGLA 643
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 86/358 (24%), Positives = 160/358 (44%), Gaps = 65/358 (18%)
Query: 29 VFCNWTSMMGMYNVLGYYEEIVNLFYLM---IDKGVRPDHFVCPKVYKACSELKDYRVGK 85
+ CN +++ Y EE + L+ L+ VR DH+ AC+ + R+G+
Sbjct: 68 LLCN--ALLIAYAARALPEEALRLYALLNHAARPPVRSDHYTYSAALTACARSRRLRLGR 125
Query: 86 DVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKC-R 144
V+ +M+ R L D + + NSL++ YA R
Sbjct: 126 SVHAHMLR--------RARSLPDTAV--------------------LRNSLLNLYASSVR 157
Query: 145 Y----LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTIS 200
Y + V F + ++++VSWN + Y G +E L + M++ +P +S
Sbjct: 158 YREARVDVVRRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELF--VRMLEDGFRPTPVS 215
Query: 201 LSGVLAACA--------QVKG--VKLG-KAIHG-YVLRHHIHLSTACGFVICSCSVFNQL 248
+ A Q+ G VK G + I+ +V+ I + + G V + VF++
Sbjct: 216 FVNIFPAAVADDPSWPFQLYGLLVKYGVEYINDLFVVSSAIDMFSEFGDVQSARRVFDRA 275
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP-NTVTIVSVLPACLKLAALPQG 307
+ ++ VWN++I+ +V++GQ +A+DL ++ + P + VT +S L A + + G
Sbjct: 276 AKKNTEVWNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSLG 335
Query: 308 LGTGSF------------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ + NAL+ MY RCG +Q + +F +P K++V+WN M++ +
Sbjct: 336 QQLHGYLIKGMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEKDIVTWNTMVTAF 393
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 90/230 (39%), Gaps = 53/230 (23%)
Query: 1 MELGIQVHAHLIVCGVE---LCAFL------------GSQLLEVFCN-------WTSMMG 38
+++G Q H +LI G+E L ++L ++ + F N W +M+
Sbjct: 434 LQIGKQAHGYLIRHGIEGEGLESYLIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNAMIA 493
Query: 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
Y G E+ + +F M++ G+ P V AC VG VY F
Sbjct: 494 GYTQSGQPEKAILVFRAMLEAGLEPTSVTLASVLPACDP-----VGGGVYSGKQIHCFAV 548
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
C +D + V +LID Y+KC + + F +
Sbjct: 549 RRC------------------------LDTNVFVGTALIDMYSKCGEITTAENVFGGMTG 584
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
K V++ M++G GF ++ L + M+ + ++P+ ++ ++AC
Sbjct: 585 KSTVTYTTMISGLGQHGFGKKALALFNSMQ--EKGLKPDAVTFLSAISAC 632
>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 94/388 (24%), Positives = 186/388 (47%), Gaps = 56/388 (14%)
Query: 7 VHAHLIVCGVELCAFLGSQLLEVFCNWTSMMG---------------MYNVL-------- 43
+HAH+I + +FL +++++V C+ T +G +YN +
Sbjct: 33 IHAHVIKYSLSQSSFLVTKMVDV-CDKTEDLGYASLLFKQVKEPNGYLYNAMIRAHTHNK 91
Query: 44 ------GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
+Y+E++ L + + PD F P V K+CS L Y +GK V+ ++ +
Sbjct: 92 VYALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCSGLVCYNLGKQVHAHLCKFGPK 151
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKI 156
N ++ L+D++ KC + +F+ M ++D + NS+I + ++ + F +
Sbjct: 152 SNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGHVGVGQMRKAGALFDLM 211
Query: 157 KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKL 216
+ +VSW AM++GY G + + +M+++ ++P+ IS+ VL ACAQ+ +++
Sbjct: 212 PYRTIVSWTAMISGYTRLGSYADALYVFRQMQIV--GVEPDEISIISVLPACAQLGALEV 269
Query: 217 GKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSIISAFVR 265
GK IH Y R+ + T+ CG + + +F+Q+S DV+ W+++I
Sbjct: 270 GKWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMSKGDVISWSTMIGGLAN 329
Query: 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----------- 314
G+ +A++L + + A ++PN +T + +L AC +GL +
Sbjct: 330 HGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWNEGLAYFDSMSKDYHIEPEVE 389
Query: 315 -WNALIDMYGRCGAIQKSRKIFVLMPHK 341
+ L+D+ GR G + ++ + MP K
Sbjct: 390 HYGCLVDILGRAGRLSQALDVIEKMPMK 417
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 125/281 (44%), Gaps = 63/281 (22%)
Query: 130 FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAG------YALG-GFREEVTN 182
FLV ++D K L + F ++K+ + +NAM+ YAL F +E+
Sbjct: 47 FLVTK-MVDVCDKTEDLGYASLLFKQVKEPNGYLYNAMIRAHTHNKVYALAILFYKEMLR 105
Query: 183 LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHL 231
L D + + P+ + V+ +C+ + LGK +H ++ + I +
Sbjct: 106 LKDPES--ENPIFPDRFTFPFVIKSCSGLVCYNLGKQVHAHLCKFGPKSNITMENALIDM 163
Query: 232 STACGFVICSCSVFNQLSTRDVVVWNSIISA----------------------------- 262
T C ++ + VF+ + RD + WNSIIS
Sbjct: 164 YTKCASLLDAHKVFDGMVERDAISWNSIISGHVGVGQMRKAGALFDLMPYRTIVSWTAMI 223
Query: 263 --FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLG 309
+ R G DAL + R + + V+P+ ++I+SVLPAC +L AL GL
Sbjct: 224 SGYTRLGSYADALYVFRQMQIVGVEPDEISIISVLPACAQLGALEVGKWIHMYCDRNGLL 283
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ + NAL++MY +CG I ++ ++F M +++SW+ MI
Sbjct: 284 RKTSICNALMEMYSKCGCIGQAYQLFDQMSKGDVISWSTMI 324
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
NALIDMY +C ++ + K+F M ++ +SWN +IS
Sbjct: 158 NALIDMYTKCASLLDAHKVFDGMVERDAISWNSIIS 193
>gi|15234984|ref|NP_194257.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75265547|sp|Q9SB36.1|PP337_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g25270, chloroplastic; Flags: Precursor
gi|4454015|emb|CAA23068.1| putative protein [Arabidopsis thaliana]
gi|7269378|emb|CAB81338.1| putative protein [Arabidopsis thaliana]
gi|332659633|gb|AEE85033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 527
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 152/327 (46%), Gaps = 61/327 (18%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ Y LG YE+ + L++ M + GV+PD F P+V KAC + ++G+ ++ ++
Sbjct: 163 WNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDLV 222
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
E D V N+L+ YAKC + +
Sbjct: 223 K------------------------------EGFGYDVYVLNALVVMYAKCGDIVKARNV 252
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I KD VSWN+ML GY G E ++ M+Q ++P+ +++S VL A+V
Sbjct: 253 FDMIPHKDYVSWNSMLTGYLHHGLLHEALDIF--RLMVQNGIEPDKVAISSVL---ARVL 307
Query: 213 GVKLGKAIHGYVLRHHI--HLSTACGFVIC---------SCSVFNQLSTRDVVVWNSIIS 261
K G+ +HG+V+R + LS A ++ +C +F+Q+ RD V WN+IIS
Sbjct: 308 SFKHGRQLHGWVIRRGMEWELSVANALIVLYSKRGQLGQACFIFDQMLERDTVSWNAIIS 367
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------- 314
A ++ + L + AN KP+ +T VSVL C + G S +
Sbjct: 368 AHSKNS---NGLKYFEQMHRANAKPDGITFVSVLSLCANTGMVEDGERLFSLMSKEYGID 424
Query: 315 -----WNALIDMYGRCGAIQKSRKIFV 336
+ ++++YGR G ++++ + V
Sbjct: 425 PKMEHYACMVNLYGRAGMMEEAYSMIV 451
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 129/243 (53%), Gaps = 23/243 (9%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKD--LVSWNAMLAGYALGGFREEVTNLLDEMEM 189
+++ L+ YA C Y +V+H F ++ ++D +WN++++GYA G E+ L +M
Sbjct: 129 ISSKLVRLYASCGYAEVAHEVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALY--FQM 186
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFV 238
+ ++P+ + VL AC + V++G+AIH YVL + + CG +
Sbjct: 187 AEDGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDI 246
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ + +VF+ + +D V WNS+++ ++ G + +ALD+ R ++ ++P+ V I SVL
Sbjct: 247 VKARNVFDMIPHKDYVSWNSMLTGYLHHGLLHEALDIFRLMVQNGIEPDKVAISSVLARV 306
Query: 299 LKLA--------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
L + +G+ V NALI +Y + G + ++ IF M ++ VSWN +I
Sbjct: 307 LSFKHGRQLHGWVIRRGMEWELSVANALIVLYSKRGQLGQACFIFDQMLERDTVSWNAII 366
Query: 351 SVY 353
S +
Sbjct: 367 SAH 369
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 106/203 (52%), Gaps = 33/203 (16%)
Query: 184 LDEMEMIQTDMQPNT---ISLS------GVLAACAQVKGVKLGKAIH----GYVLRHHIH 230
L+ ++ + TD++ + ISL+ +L C ++ + G +H Y+LR+++
Sbjct: 69 LEALDSVITDLETSAQKGISLTEPEIFASLLETCYSLRAIDHGVRVHHLIPPYLLRNNLG 128
Query: 231 LST-------ACGFVICSCSVFNQLSTRDV--VVWNSIISAFVRSGQVVDALDLLRDVIV 281
+S+ +CG+ + VF+++S RD WNS+IS + GQ DA+ L +
Sbjct: 129 ISSKLVRLYASCGYAEVAHEVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQMAE 188
Query: 282 ANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWNALIDMYGRCGAIQK 330
VKP+ T VL AC + ++ +G G +V NAL+ MY +CG I K
Sbjct: 189 DGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVK 248
Query: 331 SRKIFVLMPHKNLVSWNVMISVY 353
+R +F ++PHK+ VSWN M++ Y
Sbjct: 249 ARNVFDMIPHKDYVSWNSMLTGY 271
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 84/192 (43%), Gaps = 40/192 (20%)
Query: 30 FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
+ +W SM+ Y G E +++F LM+ G+ PD V + + ++ G+ ++
Sbjct: 261 YVSWNSMLTGYLHHGLLHEALDIFRLMVQNGIEPDKVAISSV---LARVLSFKHGRQLHG 317
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
++I M+ + V N+LI Y+K L +
Sbjct: 318 WVIR------------------------------RGMEWELSVANALIVLYSKRGQLGQA 347
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME-MIQTDMQPNTISLSGVLAAC 208
F ++ ++D VSWNA+++ ++ + +N L E M + + +P+ I+ VL+ C
Sbjct: 348 CFIFDQMLERDTVSWNAIISAHS------KNSNGLKYFEQMHRANAKPDGITFVSVLSLC 401
Query: 209 AQVKGVKLGKAI 220
A V+ G+ +
Sbjct: 402 ANTGMVEDGERL 413
>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa]
gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 161/331 (48%), Gaps = 26/331 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +MM + +L+ M++ P++F V +AC ++ + ++G + ++
Sbjct: 80 WNTMMQAFVEKNEAVRAFSLYKHMLESNYLPNNFTFSFVIRACIDVFNLQMGLCFHGQVV 139
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFE-EMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+E V+ L+ L+ CG M++ +F+ + +D + LI Y + ++
Sbjct: 140 KFGWESYDFVQNGLIHLYANCGFMDLARNMFDMSIKRDVVTWTCLISGYLNSGQVLIARE 199
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +K+ VSW A++AGY GF +E + +M++ + + N S+ G L ACA +
Sbjct: 200 LFDRMPEKNPVSWGALIAGYVRIGFFKEALEVFYDMQV--SGFRLNRASIVGALTACAFL 257
Query: 212 KGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSII 260
+ G+ IH YV RHH+ L CG + +CSVF+++ RDV + +I
Sbjct: 258 GALDQGRWIHAYVKRHHMSLDRMLGTALIDMYAKCGCIEMACSVFDEMDDRDVYAFTCLI 317
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-----TGSFV- 314
S + A+DL + V PN VT V VL AC ++ + +GL + +V
Sbjct: 318 SGLANHDKSEAAIDLFNRMQDEGVVPNEVTFVCVLNACSRMGMVDEGLRIFESMSNRYVI 377
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMP 339
+ L+D+ GR G I++++++ MP
Sbjct: 378 EPQIQHYGCLVDLLGRAGKIEEAKQVVREMP 408
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 108/249 (43%), Gaps = 55/249 (22%)
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
++ K WN M+ + E V M++++ PN + S V+ AC V ++
Sbjct: 72 LQNKSTFIWNTMMQAFVEKN--EAVRAFSLYKHMLESNYLPNNFTFSFVIRACIDVFNLQ 129
Query: 216 LGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
+G HG V++ IHL CGF+ + ++F+ RDVV W +IS ++
Sbjct: 130 MGLCFHGQVVKFGWESYDFVQNGLIHLYANCGFMDLARNMFDMSIKRDVVTWTCLISGYL 189
Query: 265 RSGQVV-------------------------------DALDLLRDVIVANVKPNTVTIVS 293
SGQV+ +AL++ D+ V+ + N +IV
Sbjct: 190 NSGQVLIARELFDRMPEKNPVSWGALIAGYVRIGFFKEALEVFYDMQVSGFRLNRASIVG 249
Query: 294 VLPACLKLAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKN 342
L AC L AL QG ++V ALIDMY +CG I+ + +F M ++
Sbjct: 250 ALTACAFLGALDQGRWIHAYVKRHHMSLDRMLGTALIDMYAKCGCIEMACSVFDEMDDRD 309
Query: 343 LVSWNVMIS 351
+ ++ +IS
Sbjct: 310 VYAFTCLIS 318
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 12/137 (8%)
Query: 228 HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
H H S A + + +F L + +WN+++ AFV + V A L + ++ +N PN
Sbjct: 53 HAH-SNARSSLFYAERLFLCLQNKSTFIWNTMMQAFVEKNEAVRAFSLYKHMLESNYLPN 111
Query: 288 TVTIVSVLPACLKLAALPQGL-----------GTGSFVWNALIDMYGRCGAIQKSRKIFV 336
T V+ AC+ + L GL + FV N LI +Y CG + +R +F
Sbjct: 112 NFTFSFVIRACIDVFNLQMGLCFHGQVVKFGWESYDFVQNGLIHLYANCGFMDLARNMFD 171
Query: 337 LMPHKNLVSWNVMISVY 353
+ +++V+W +IS Y
Sbjct: 172 MSIKRDVVTWTCLISGY 188
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/272 (19%), Positives = 115/272 (42%), Gaps = 64/272 (23%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ Y +G+++E + +FY M G R + AC+ L G+ ++ Y+
Sbjct: 211 SWGALIAGYVRIGFFKEALEVFYDMQVSGFRLNRASIVGALTACAFLGALDQGRWIHAYV 270
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + L+D++ KCG +E+ +F+EMD
Sbjct: 271 KRHHMSLDRMLGTALIDMYAKCGCIEMACSVFDEMD------------------------ 306
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+D+ ++ +++G A E +L + M+ + PN ++ VL AC+++
Sbjct: 307 ------DRDVYAFTCLISGLANHDKSEAAIDLFNRMQ--DEGVVPNEVTFVCVLNACSRM 358
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVV-----WNSIISAFVRS 266
V G LR +F +S R V+ + ++ R+
Sbjct: 359 GMVDEG-------LR-----------------IFESMSNRYVIEPQIQHYGCLVDLLGRA 394
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
G++ +A ++R++ ++P++ T+ ++L AC
Sbjct: 395 GKIEEAKQVVREM---PLQPDSYTLGALLDAC 423
>gi|224080081|ref|XP_002306009.1| predicted protein [Populus trichocarpa]
gi|222848973|gb|EEE86520.1| predicted protein [Populus trichocarpa]
Length = 870
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 91/355 (25%), Positives = 165/355 (46%), Gaps = 64/355 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRV---GKDVY 88
+W +++ + E+ LF M+ ++P++ + C+ +Y GK+++
Sbjct: 199 SWNAIISGFAENNLMEDAFRLFSSMLKGQIKPNYTTLANILPVCASFDEYIAYWFGKEIH 258
Query: 89 DYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKV 148
Y++ E+ D V N+L+ FY + ++
Sbjct: 259 GYVLR-----------------------------HNELLADVFVWNALVSFYLRVGRVEE 289
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDM-QPNTISLSGVLAA 207
+ F +++ +DLVSWNA++AGYA G + L E++ DM +P++++L ++ A
Sbjct: 290 AELLFRRMELRDLVSWNAIIAGYASNGEWSKALELFH--ELLTLDMIEPDSVTLLCIIPA 347
Query: 208 CAQVKGVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVV 255
CAQ + + +GK IHGYVLRH + C + + F +S RD++
Sbjct: 348 CAQSRNLHVGKMIHGYVLRHPLLCEDTSVGNALVSFYAKCDDIEGAYETFFMISRRDLIS 407
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA------------ 303
WNS++ A V SG L+LLR ++ P++VTI+SV+ C+ +
Sbjct: 408 WNSMLDALVESGYNTWFLELLRWMLSEGTTPDSVTILSVVHFCVNVLKEDKVKEAHSYSI 467
Query: 304 ----LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIF-VLMPHKNLVSWNVMISVY 353
L + NA++D Y +CG I+ + K+F L ++NLV++ +IS Y
Sbjct: 468 RHRLLASKFDVEPTIGNAILDAYAKCGNIEYASKVFQSLSENRNLVTFKAIISGY 522
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 137/262 (52%), Gaps = 35/262 (13%)
Query: 118 ITSGLFEEMDQDFLVNNSLIDFYAKCRYL-KVSHCKFSKIKQKDLVSWNAMLAGYALGGF 176
I SGL D L N+L+ YAKC + + ++ F I +KD+VSWNA+++G+A
Sbjct: 157 IKSGL----DTHTLAGNALVSMYAKCGLVCQDAYAAFDSIDEKDVVSWNAIISGFAENNL 212
Query: 177 REEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK---GVKLGKAIHGYVLRHHIHLST 233
E+ L M++ ++PN +L+ +L CA GK IHGYVLRH+ L+
Sbjct: 213 MEDAFRLFS--SMLKGQIKPNYTTLANILPVCASFDEYIAYWFGKEIHGYVLRHNELLAD 270
Query: 234 A------------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281
G V + +F ++ RD+V WN+II+ + +G+ AL+L +++
Sbjct: 271 VFVWNALVSFYLRVGRVEEAELLFRRMELRDLVSWNAIIAGYASNGEWSKALELFHELLT 330
Query: 282 AN-VKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNALIDMYGRCGAI 328
+ ++P++VT++ ++PAC + L G L + V NAL+ Y +C I
Sbjct: 331 LDMIEPDSVTLLCIIPACAQSRNLHVGKMIHGYVLRHPLLCEDTSVGNALVSFYAKCDDI 390
Query: 329 QKSRKIFVLMPHKNLVSWNVMI 350
+ + + F ++ ++L+SWN M+
Sbjct: 391 EGAYETFFMISRRDLISWNSML 412
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/321 (23%), Positives = 140/321 (43%), Gaps = 56/321 (17%)
Query: 62 RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSG 121
R D+ + K+C+ L + G+ ++ ++ I V + LL+++ KCG ++ +
Sbjct: 21 RQDYQAVASILKSCAGLSAIKWGRALHGSIVRIGHVSCHAVSKALLNMYAKCGALDESKK 80
Query: 122 LFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGG-FREEV 180
LF E+ +D + WN +L+GYA + E
Sbjct: 81 LFGEI---------------------------GSCNDRDPIFWNILLSGYAGSRVYDAET 113
Query: 181 TNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVIC 240
L EM +P++++ + VL CA++ V +G++++ Y ++ + T G +
Sbjct: 114 LRLFREMHGANYP-KPSSVTAAIVLPVCARLGDVYMGRSVNCYAIKSGLDTHTLAGNALV 172
Query: 241 SC------------SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288
S + F+ + +DVV WN+IIS F + + DA L ++ +KPN
Sbjct: 173 SMYAKCGLVCQDAYAAFDSIDEKDVVSWNAIISGFAENNLMEDAFRLFSSMLKGQIKPNY 232
Query: 289 VTIVSVLPACLKLAAL---------------PQGLGTGSFVWNALIDMYGRCGAIQKSRK 333
T+ ++LP C L FVWNAL+ Y R G ++++
Sbjct: 233 TTLANILPVCASFDEYIAYWFGKEIHGYVLRHNELLADVFVWNALVSFYLRVGRVEEAEL 292
Query: 334 IFVLMPHKNLVSWNVMISVYG 354
+F M ++LVSWN +I+ Y
Sbjct: 293 LFRRMELRDLVSWNAIIAGYA 313
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/350 (23%), Positives = 160/350 (45%), Gaps = 34/350 (9%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKAC-SELKDYRVGKDVYDY 90
+W SM+ GY + L M+ +G PD V C + LK+ +V K+ + Y
Sbjct: 407 SWNSMLDALVESGYNTWFLELLRWMLSEGTTPDSVTILSVVHFCVNVLKEDKV-KEAHSY 465
Query: 91 -----MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM--DQDFLVNNSLIDFYAKC 143
+++ KF+ + +LD + KCG +E S +F+ + +++ + ++I Y C
Sbjct: 466 SIRHRLLASKFDVEPTIGNAILDAYAKCGNIEYASKVFQSLSENRNLVTFKAIISGYINC 525
Query: 144 RYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSG 203
L ++ F+++ DL WN M+ YA + L E++ ++P+ +++
Sbjct: 526 GLLDEAYITFNRMPSSDLSVWNLMVRLYAENDCSSQALGLFHELQ--AHGIKPDAVTIMS 583
Query: 204 VLAACAQVKGVKLGKAIHGYVLRH---HIHLSTA-------CGFVICSCSVFNQLSTRDV 253
+L ACA++ V+L K HGY +R +HL A CG + + +F + +D+
Sbjct: 584 LLPACAEMASVQLIKQCHGYAIRSCFGDLHLDGALQDVYAKCGSIGYAFKLFQLIPNKDL 643
Query: 254 VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF 313
+++ ++I + G +AL +I +KP+ V I +VL AC + +GL
Sbjct: 644 IIFTAMIRGYAMHGMGKEALGTFFHMIELGIKPDHVIITTVLSACSHAGLVDEGLNIFYS 703
Query: 314 V------------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ ++ ++D+ R G I + + MP N W ++
Sbjct: 704 IEKVHGMKLTMEQYSCVVDLLARGGRIDDAFSMVTGMPIEANANIWGTLL 753
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 91/387 (23%), Positives = 163/387 (42%), Gaps = 90/387 (23%)
Query: 27 LEVFCNWTSMMGMYNVLGYYEEIVNLFY-LMIDKGVRPDHFVCPKVYKACSELKDYRVGK 85
L +W +++ Y G + + + LF+ L+ + PD + AC++ ++ VGK
Sbjct: 299 LRDLVSWNAIIAGYASNGEWSKALELFHELLTLDMIEPDSVTLLCIIPACAQSRNLHVGK 358
Query: 86 DVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRY 145
++ Y++ + PLL C +D V N+L+ FYAKC
Sbjct: 359 MIHGYVL----------RHPLL-----C--------------EDTSVGNALVSFYAKCDD 389
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
++ ++ F I ++DL+SWN+ML G+ LL M+ P+++++ V+
Sbjct: 390 IEGAYETFFMISRRDLISWNSMLDALVESGYNTWFLELL--RWMLSEGTTPDSVTILSVV 447
Query: 206 AACAQVKGVKLGKAIHGYVLRHHIHLST-------------------------------- 233
C V K H Y +RH + S
Sbjct: 448 HFCVNVLKEDKVKEAHSYSIRHRLLASKFDVEPTIGNAILDAYAKCGNIEYASKVFQSLS 507
Query: 234 ----------------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLR 277
CG + + FN++ + D+ VWN ++ + + AL L
Sbjct: 508 ENRNLVTFKAIISGYINCGLLDEAYITFNRMPSSDLSVWNLMVRLYAENDCSSQALGLFH 567
Query: 278 DVIVANVKPNTVTIVSVLPACLKLAALP-----QGLGTGS-----FVWNALIDMYGRCGA 327
++ +KP+ VTI+S+LPAC ++A++ G S + AL D+Y +CG+
Sbjct: 568 ELQAHGIKPDAVTIMSLLPACAEMASVQLIKQCHGYAIRSCFGDLHLDGALQDVYAKCGS 627
Query: 328 IQKSRKIFVLMPHKNLVSWNVMISVYG 354
I + K+F L+P+K+L+ + MI Y
Sbjct: 628 IGYAFKLFQLIPNKDLIIFTAMIRGYA 654
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 100/191 (52%), Gaps = 30/191 (15%)
Query: 193 DMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR------HHI-----HLSTACGFVICS 241
D + + +++ +L +CA + +K G+A+HG ++R H + ++ CG + S
Sbjct: 19 DFRQDYQAVASILKSCAGLSAIKWGRALHGSIVRIGHVSCHAVSKALLNMYAKCGALDES 78
Query: 242 CSVFNQLST---RDVVVWNSIISAFVRSGQVVDA--LDLLRDVIVANV-KPNTVTIVSVL 295
+F ++ + RD + WN ++S + S +V DA L L R++ AN KP++VT VL
Sbjct: 79 KKLFGEIGSCNDRDPIFWNILLSGYAGS-RVYDAETLRLFREMHGANYPKPSSVTAAIVL 137
Query: 296 PACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAI-QKSRKIFVLMPHKNL 343
P C +L A+ GL T + NAL+ MY +CG + Q + F + K++
Sbjct: 138 PVCARLGDVYMGRSVNCYAIKSGLDTHTLAGNALVSMYAKCGLVCQDAYAAFDSIDEKDV 197
Query: 344 VSWNVMISVYG 354
VSWN +IS +
Sbjct: 198 VSWNAIISGFA 208
>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Cucumis sativus]
gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Cucumis sativus]
Length = 816
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 100/398 (25%), Positives = 178/398 (44%), Gaps = 80/398 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ L Q+HA L+V G FL ++L+ + W SM+
Sbjct: 56 VHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISA 115
Query: 40 YNVLGYYEEIVNLFYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
Y +G++ V+ F + ++ DH+ P V +AC L D G+ V+ ++ + FE
Sbjct: 116 YARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDD---GRKVHCLVLKLGFE- 171
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
C D + S I FY++ ++ ++ F +
Sbjct: 172 --------------C---------------DVYIAASFIHFYSRFGFVSLACNLFDNMMI 202
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+D+ +WNAM++G+ L G E + DEM M +++++S +L C Q+ + G
Sbjct: 203 RDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSM--DSVTISSLLPICVQLDDIISGV 260
Query: 219 AIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
IH Y ++ I++ G + + ++FNQ+ RD+V WNS+++AF ++
Sbjct: 261 LIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNK 320
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----W-------- 315
+ V AL + + V P+ +T+VS+ +L FV W
Sbjct: 321 KPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALG 380
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
NA+IDMY + G I +RK+F +P K+++SWN +I+ Y
Sbjct: 381 NAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGY 418
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 97/360 (26%), Positives = 165/360 (45%), Gaps = 56/360 (15%)
Query: 19 CAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL 78
C + ++ W +M+ + + G E + +F M K V D + C +L
Sbjct: 194 CNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQL 253
Query: 79 KDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLID 138
D G ++ Y I + E DLF+ C N+LI+
Sbjct: 254 DDIISGVLIHVYAIKLGLE---------FDLFV-C--------------------NALIN 283
Query: 139 FYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT 198
YAK L+ + F+++K +D+VSWN++LA + ++ V L +M + P+
Sbjct: 284 MYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQN--KKPVIALGVYNKMHSIGVVPDL 341
Query: 199 ISLSGVLAACAQVKGVKLGKAIHGYVLR-----HHIHLSTAC-------GFVICSCSVFN 246
++L + + A++ ++IHG+V R H I L A GF+ + VF
Sbjct: 342 LTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFE 401
Query: 247 QLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV-IVANVKPNTVTIVSVLPACLKLAALP 305
L +DV+ WNS+I+ + ++G +A+D+ + + PN T VS+L A +L AL
Sbjct: 402 GLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALK 461
Query: 306 QGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
QG+ FV L+DMYG+CG + + +F +PH++ VSWN +IS +G
Sbjct: 462 QGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHG 521
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 137/269 (50%), Gaps = 25/269 (9%)
Query: 109 LFIKCGRMEITSGLFEEM-----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
+F+ C ++ + L + Q ++ LI+ YA + + F +I+ KD+ +
Sbjct: 49 IFLYCTKVHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYT 108
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG--------VK 215
WN+M++ YA G + +E + + +Q + + V+ AC + +K
Sbjct: 109 WNSMISAYARIGHFHAAVDCFNEF-LSTSFLQSDHYTFPPVIRACGNLDDGRKVHCLVLK 167
Query: 216 LGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDL 275
LG Y+ IH + GFV +C++F+ + RD+ WN++IS F +G+V +AL++
Sbjct: 168 LGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEV 227
Query: 276 LRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGR 324
++ +V ++VTI S+LP C++L A+ GL FV NALI+MY +
Sbjct: 228 FDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAK 287
Query: 325 CGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G ++ + IF M +++VSWN +++ +
Sbjct: 288 FGELRSAETIFNQMKVRDIVSWNSLLAAF 316
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 116/247 (46%), Gaps = 25/247 (10%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
D + N++ID YAK ++ + F + KD++SWN+++ GY+ G E ++ M
Sbjct: 375 HDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSM 434
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-----------ACG 236
+ PN + +L A +Q+ +K G HG ++++ ++ CG
Sbjct: 435 RYYSGAV-PNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCG 493
Query: 237 FVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296
+ + S+F ++ + V WN+IIS G + A+ L +++ VKP+ +T VS+L
Sbjct: 494 KLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLS 553
Query: 297 A------------CLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLV 344
A C +L G+ + ++D++GR G ++K+ MP + V
Sbjct: 554 ACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDV 613
Query: 345 S-WNVMI 350
S W ++
Sbjct: 614 SVWGALL 620
>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
Length = 938
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 98/398 (24%), Positives = 182/398 (45%), Gaps = 47/398 (11%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF--CNW-------------------TSMMGM 39
+E G +V+A + G+E+ + S L++++ CN +M
Sbjct: 252 LETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASN 311
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G E + +F LM+D GVRPD +CS+L++ GK + Y++ FE
Sbjct: 312 YVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESW 371
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKIKQ 158
+ L+D+++KC R + +F+ M +V NS++ Y + + + F + +
Sbjct: 372 DNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPE 431
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
K++VSWN +++G G EE + M+ Q + + +++ + +AC + + L K
Sbjct: 432 KNIVSWNTIISGLVQGSLFEEAIEVFCSMQS-QEGVNADGVTMMSIASACGHLGALDLAK 490
Query: 219 AIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
I+ Y+ ++ I L + CG + S+FN L+ RDV W + I A +G
Sbjct: 491 WIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAG 550
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GLGTGSFVW 315
A++L D+I +KP+ V V L AC + Q G+ +
Sbjct: 551 NAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHY 610
Query: 316 NALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
++D+ GR G ++++ ++ MP N V WN +++
Sbjct: 611 GCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAA 648
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/343 (21%), Positives = 164/343 (47%), Gaps = 53/343 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
+ S++ Y G E + LF M++ G+ PD + P AC++ + G ++ ++
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ + +D V NSL+ FYA+C L +
Sbjct: 162 KMGYA------------------------------KDLFVQNSLVHFYAECGELDSARKV 191
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ ++++VSW +M+ GYA F ++ +L M + ++ PN++++ V++ACA+++
Sbjct: 192 FDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRM-VRDEEVTPNSVTMVCVISACAKLE 250
Query: 213 GVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ G+ ++ ++ I ++ C + + +F++ ++ + N++ S
Sbjct: 251 DLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMAS 310
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGT 310
+VR G +AL + ++ + V+P+ ++++S + +C +L L G +
Sbjct: 311 NYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFES 370
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ NALIDMY +C + +IF M +K +V+WN +++ Y
Sbjct: 371 WDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGY 413
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 93/419 (22%), Positives = 174/419 (41%), Gaps = 108/419 (25%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
GIQ+H ++ G F+ + L+ + +WTSM+ Y
Sbjct: 153 GIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYAR 212
Query: 43 LGYYEEIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+ ++ V+LF+ M+ D+ V P+ V AC++L+D G+ VY ++ + E N
Sbjct: 213 RDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDL 272
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ L+D+++KC +++ LF+E L DL
Sbjct: 273 MVSALVDMYMKCNAIDVAKRLFDEYGASNL----------------------------DL 304
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
NAM + Y G E + + M+ + ++P+ IS+ +++C+Q++ + GK+ H
Sbjct: 305 C--NAMASNYVRQGLTREALGVFN--LMMDSGVRPDRISMLSAISSCSQLRNILWGKSCH 360
Query: 222 GYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
GYVLR+ I + C + +F+++S + VV WNSI++ +V +G+V
Sbjct: 361 GYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVD 420
Query: 271 DALDLLRDVIVAN--------------------------------VKPNTVTIVSVLPAC 298
A + + N V + VT++S+ AC
Sbjct: 421 AAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASAC 480
Query: 299 LKLAAL-----------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
L AL G+ + L+DM+ RCG + + IF + ++++ +W
Sbjct: 481 GHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAW 539
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA----------- 303
++NS+I + SG +A+ L ++ + + P+ T L AC K A
Sbjct: 101 MYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLI 160
Query: 304 LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ G FV N+L+ Y CG + +RK+F M +N+VSW MI Y
Sbjct: 161 VKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYA 211
>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
Length = 784
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 127/244 (52%), Gaps = 24/244 (9%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
+ LI Y KCR L + ++ ++++VSW AM++GY+ G+ E +L +EM+
Sbjct: 47 LRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLF--VEMLM 104
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTA-------CGFVIC 240
+ PN + + VL +C G +LG+ IH V++ HI + ++ G +
Sbjct: 105 SGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICE 164
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ VF+ L RDVV +IIS + + G +ALDL R + ++ N VT SVL A
Sbjct: 165 ARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSG 224
Query: 301 LAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
LAAL G S V N+LIDMY +CG++ SR+IF MP + ++SWN M
Sbjct: 225 LAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAM 284
Query: 350 ISVY 353
+ Y
Sbjct: 285 LVGY 288
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/382 (23%), Positives = 172/382 (45%), Gaps = 78/382 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNV 42
G +VHAH+I E +L ++L+ ++ +WT+M+ Y+
Sbjct: 29 GQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQ 88
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
GY E ++LF M+ G P+ F V +C+ +++G+ ++ +I FE + V
Sbjct: 89 RGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFV 148
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
LLD++ K G++ C +V F + ++D+V
Sbjct: 149 GSSLLDMYAKAGKI--------------------------CEARRV----FDGLPERDVV 178
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
S A+++GYA G EE +L ++ + M+ N ++ + VL A + + + G+ +H
Sbjct: 179 SCTAIISGYAQLGLDEEALDLFRRLQ--REGMRSNYVTYASVLTALSGLAALDHGRQVHS 236
Query: 223 YVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+VLR I + + CG + S +F+ + R V+ WN+++ + + G +
Sbjct: 237 HVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGRE 296
Query: 272 ALDLLRDVIVAN-VKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA------------- 317
A++L + + N VKP++VT ++VL C +GL + N
Sbjct: 297 AVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGC 356
Query: 318 LIDMYGRCGAIQKSRKIFVLMP 339
++D++GR G ++++ + MP
Sbjct: 357 VVDLFGRAGRVEEAFEFIKKMP 378
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/379 (21%), Positives = 152/379 (40%), Gaps = 91/379 (24%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNW---------------------TSMMGM 39
+LG Q+H+ +I E F+GS LL+++ T+++
Sbjct: 127 FQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISG 186
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y LG EE ++LF + +G+R ++ V A S L G+ V+ +++ K
Sbjct: 187 YAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAK---- 242
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
L ++ ++ NSLID Y+KC L S F + ++
Sbjct: 243 -------LPFYV-------------------VLQNSLIDMYSKCGSLTYSRRIFDSMPER 276
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
++SWNAML GY+ G E L M+ + ++P++++ VL+ C+ G
Sbjct: 277 TVISWNAMLVGYSKHGLGREAVELFKLMKE-ENKVKPDSVTFLAVLSGCSHG-----GME 330
Query: 220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
G + + + ++ GF ++ + ++ F R+G+V +A + ++ +
Sbjct: 331 DRGLEIFYEM-VNQKDGF------------EPEIEHYGCVVDLFGRAGRVEEAFEFIKKM 377
Query: 280 IVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALID--------------MYGRC 325
+P S+L AC + Q + G FV L++ +Y
Sbjct: 378 ---PFEPTAAIWGSLLGAC----RVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASA 430
Query: 326 GAIQKSRKIFVLMPHKNLV 344
G R + LM K ++
Sbjct: 431 GRWDDVRTVRELMKEKAVI 449
>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
Length = 846
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 102/398 (25%), Positives = 174/398 (43%), Gaps = 74/398 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ELG VHA +++ G F+ + LL ++ +W +M+
Sbjct: 183 LELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISG 242
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
G + E +LF M + P+ + V KA +L D +GK+V + + EGN
Sbjct: 243 CTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGN 302
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V L+D++ KCG + +F D +F+ +C +
Sbjct: 303 VLVGTALIDMYSKCGSLHDARSVF---DTNFI------------------NCGVN----- 336
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
WNAM++GY+ G +E L ++M Q + + + V A A K ++ G+
Sbjct: 337 --TPWNAMISGYSQSGCSQEALELY--VQMCQNGITSDLYTYCSVFNAIAASKSLQFGRV 392
Query: 220 IHGYVLRHHIHLS------------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
+HG VL+ + L + CGF+ VF+++ RD+V W ++++A+ +S
Sbjct: 393 VHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSS 452
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWN 316
+AL + PN T SVL +C L L GL T + +
Sbjct: 453 LGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIES 512
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
ALIDMY +CG+I ++ K+F + + ++VSW +IS Y
Sbjct: 513 ALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYA 550
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 154/343 (44%), Gaps = 57/343 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y+ G +E + L+ M G+ D + V+ A + K + G+ V+
Sbjct: 339 WNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHG--- 395
Query: 93 SIKFEGNACVKRPLLDLFIKCG-RMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ +KCG + + S VNN++ D Y+KC +L+
Sbjct: 396 ----------------MVLKCGLDLMVVS-----------VNNAIADAYSKCGFLEDVRK 428
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +++++D+VSW ++ Y+ EE L M + PN + S VL +CA +
Sbjct: 429 VFDRMEERDIVSWTTLVTAYSQSSLGEEA--LATFCLMREEGFAPNQFTFSSVLISCASL 486
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ G+ +HG + + I + CG + + VF+++S D+V W +II
Sbjct: 487 CFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAII 546
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL--------GTGS 312
S + + G V DAL L R + ++ +K N VT++ VL AC + +GL G G
Sbjct: 547 SGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGV 606
Query: 313 FV----WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ +ID+ GR G + + + MP N + W ++
Sbjct: 607 VPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLL 649
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 119/259 (45%), Gaps = 35/259 (13%)
Query: 123 FEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTN 182
FE+ D L N++ Y+KC + + F ++ Q+++ SW M+ G G +
Sbjct: 95 FEDKDLMVLFNHA-AHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFK 153
Query: 183 LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH----HIHLSTAC--- 235
EM+ + + P+ + S ++ +C + ++LGK +H ++ HI +ST+
Sbjct: 154 FF--CEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNM 211
Query: 236 ----GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI 291
G + S VFN ++ + V WN++IS +G ++A DL + PN T+
Sbjct: 212 YAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTL 271
Query: 292 VSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340
VSV A KL A G+ V ALIDMY +CG++ +R +F
Sbjct: 272 VSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVF----D 327
Query: 341 KNLVS------WNVMISVY 353
N ++ WN MIS Y
Sbjct: 328 TNFINCGVNTPWNAMISGY 346
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 144/347 (41%), Gaps = 57/347 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT M+ G + + F M++ G+ PD F + ++C L +GK V+ +
Sbjct: 134 SWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQI 193
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F + V+ SL++ YAK ++ S+
Sbjct: 194 VMRGFATH------------------------------IFVSTSLLNMYAKLGSIEDSYW 223
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ + + + VSWNAM++G G E +L + M PN +L V A ++
Sbjct: 224 VFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLF--VRMKNGACTPNMYTLVSVSKAVGKL 281
Query: 212 KGVKLGK---------AIHGYVL--RHHIHLSTACGFVICSCSVF--NQLSTRDVVVWNS 258
V +GK I G VL I + + CG + + SVF N ++ WN+
Sbjct: 282 VDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNA 341
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW--- 315
+IS + +SG +AL+L + + + T SV A +L G V
Sbjct: 342 MISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCG 401
Query: 316 ---------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
NA+ D Y +CG ++ RK+F M +++VSW +++ Y
Sbjct: 402 LDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAY 448
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 24/194 (12%)
Query: 182 NLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-------------HH 228
N + + + +T Q L VL CA+ ++ KA+HG VL+ H
Sbjct: 48 NRPESIGISETYQQTQVQDLIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHA 107
Query: 229 IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288
H+ + C +C VF+++ R+V W +I G D +++ + + P+
Sbjct: 108 AHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDK 167
Query: 289 VTIVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVL 337
+++ +C+ L +L +G T FV +L++MY + G+I+ S +F +
Sbjct: 168 FAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNM 227
Query: 338 MPHKNLVSWNVMIS 351
M N VSWN MIS
Sbjct: 228 MTEHNQVSWNAMIS 241
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 131/321 (40%), Gaps = 78/321 (24%)
Query: 1 MELGIQVHAHLIVCGVEL---------------CAFLGSQLLEVF--------CNWTSMM 37
++ G VH ++ CG++L C FL + +VF +WT+++
Sbjct: 387 LQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFL-EDVRKVFDRMEERDIVSWTTLV 445
Query: 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
Y+ EE + F LM ++G P+ F V +C+ L G+ V+ + +
Sbjct: 446 TAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLD 505
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
C++ L+D++ KCG + +F+ KI
Sbjct: 506 TEKCIESALIDMYAKCGSITEAGKVFD------------------------------KIS 535
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
D+VSW A+++GYA G E+ L ME+ + ++ N ++L VL AC+ V+ G
Sbjct: 536 NPDIVSWTAIISGYAQHGLVEDALQLFRRMEL--SGIKANAVTLLCVLFACSHGGMVEEG 593
Query: 218 KAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLR 277
L + + G V ++ + II R G++ DA++ +R
Sbjct: 594 -------LFYFQQMEDGYGVV------------PEMEHYACIIDLLGRVGRLDDAMEFIR 634
Query: 278 DVIVANVKPNTVTIVSVLPAC 298
+ ++PN + ++L C
Sbjct: 635 KM---PMEPNEMVWQTLLGGC 652
>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
Length = 768
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 85/346 (24%), Positives = 160/346 (46%), Gaps = 26/346 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT ++ +Y + ++F + G+RPD F AC KD G+ V+ +
Sbjct: 321 SWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNGRIVHGMV 380
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSH 150
+ + V L+D++ + G +E+ +F+ M+ +D SL++ + KC ++ +
Sbjct: 381 FRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAAR 440
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ ++ VSW AM+ GY G L EM D P I++ VL+ CA
Sbjct: 441 RIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDW-PTVITIVAVLSGCAD 499
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ LG ++HGYV + ++ L G ++ + +F ++ RDV W ++
Sbjct: 500 IGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTTM 559
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----- 314
IS G+ AL+ D+ + PN VT++SVL AC + +G +
Sbjct: 560 ISGLALHGKGTHALEAFSDMSKSGXXPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHG 619
Query: 315 -------WNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
+ ++D+ GR G +++++++ MP K + V W ++S
Sbjct: 620 IKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSA 665
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 109/253 (43%), Gaps = 56/253 (22%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+ I+ D+VSW +++ Y + ++ + + ++P++ + G ++AC K
Sbjct: 311 FNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFS--HLFHSGLRPDSFCVVGAVSACGHRK 368
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ G+ +HG V R I + + G + +CSVF + +DV W S+++
Sbjct: 369 DLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLN 428
Query: 262 AFVR------------------------------SGQV-VDALDLLRDVIVANVK-PNTV 289
F++ G+V + L+L +++ P +
Sbjct: 429 GFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVI 488
Query: 290 TIVSVLPACLKLAALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLM 338
TIV+VL C + A G + V NAL+DMY + GA+ + KIF M
Sbjct: 489 TIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEM 548
Query: 339 PHKNLVSWNVMIS 351
P +++ SW MIS
Sbjct: 549 PKRDVFSWTTMIS 561
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 86/209 (41%), Gaps = 52/209 (24%)
Query: 197 NTISLSGVLAACAQVKGVKL--GKAIH-GYVLRHHIHLS-------TACGFVICSCSVFN 246
NT + +L C ++ +K GKA+ G + HL+ T G + + VFN
Sbjct: 253 NTQTFYFLLQKCGSLEKLKQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQKVFN 312
Query: 247 QLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ 306
+ D+V W +IS ++ + Q A + + + ++P++ +V + AC L
Sbjct: 313 HIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSN 372
Query: 307 G-----------LGTGSFVWNALIDMYGRCGA---------------------------- 327
G LG+ V NALIDMY R GA
Sbjct: 373 GRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIK 432
Query: 328 ---IQKSRKIFVLMPHKNLVSWNVMISVY 353
I+ +R+IF MP +N VSW MI+ Y
Sbjct: 433 CNDIEAARRIFDEMPMRNSVSWTAMITGY 461
>gi|255581953|ref|XP_002531775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528611|gb|EEF30631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 498
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 149/317 (47%), Gaps = 27/317 (8%)
Query: 61 VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM-EIT 119
++PD++ V KACS K GK V+ +I N + L+ ++ G + E
Sbjct: 83 LKPDNYTYTFVLKACSNQKALPEGKQVHCQIIKAGISPNTHIHSSLIHMYTSSGSIVEAE 142
Query: 120 SGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREE 179
L E +++ L NS+I Y ++ + F ++K KD+ SW+A++ G G E
Sbjct: 143 CVLREFSEENTLAKNSMISGYLSKGHVDKARAMFDQMKAKDVASWSAIITGCTKNGMHTE 202
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTA- 234
L ++M + T PN +L +L+ACA + + G+ IH Y+ R I LSTA
Sbjct: 203 ALALFEDMMVSHT--LPNESALVSLLSACAHLGALHQGRWIHAYIDRIGADMSIRLSTAL 260
Query: 235 ------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288
CG + F ++ RD+V W +IIS F GQ +L +++ + PN
Sbjct: 261 IDMYAKCGDIQSGYKFFRKMPRRDIVTWGAIISGFAIYGQAKKCFELFEEMLADGIYPNG 320
Query: 289 VTIVSVLPACLKLAALPQG----------LGTGSFV--WNALIDMYGRCGAIQKSRKIFV 336
V V++L AC + +G LG + + ++D+ GR G ++++ + +
Sbjct: 321 VIFVAILSACSHAGYVEEGKLYFNQMMVDLGIRPSIEHYGCMVDLLGRAGRLKEAEEFII 380
Query: 337 LMPHK-NLVSWNVMISV 352
MP K N V W M+S
Sbjct: 381 SMPEKPNSVIWGSMLSA 397
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 134/293 (45%), Gaps = 61/293 (20%)
Query: 118 ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFR 177
+ SGL ++ L L++ Y + + F +I D+ +N M+ G LG +
Sbjct: 12 VVSGL---LNHHSLCGRRLLESYVTMSEISYARSIFERIPYLDVFVYNTMIRGLMLG--K 66
Query: 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR------HHIHL 231
+LL E++ ++P+ + + VL AC+ K + GK +H +++ HIH
Sbjct: 67 RPYDSLLLFNELLLGCLKPDNYTYTFVLKACSNQKALPEGKQVHCQIIKAGISPNTHIHS 126
Query: 232 S-----TACGFVI-CSC------------------------------SVFNQLSTRDVVV 255
S T+ G ++ C ++F+Q+ +DV
Sbjct: 127 SLIHMYTSSGSIVEAECVLREFSEENTLAKNSMISGYLSKGHVDKARAMFDQMKAKDVAS 186
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV- 314
W++II+ ++G +AL L D++V++ PN +VS+L AC L AL QG +++
Sbjct: 187 WSAIITGCTKNGMHTEALALFEDMMVSHTLPNESALVSLLSACAHLGALHQGRWIHAYID 246
Query: 315 ----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS---VYG 354
ALIDMY +CG IQ K F MP +++V+W +IS +YG
Sbjct: 247 RIGADMSIRLSTALIDMYAKCGDIQSGYKFFRKMPRRDIVTWGAIISGFAIYG 299
>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
Length = 580
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 99/393 (25%), Positives = 186/393 (47%), Gaps = 50/393 (12%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNVLG 44
Q+H IV G+ +L + L++V+ ++ M+ Y G
Sbjct: 84 QIHCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPSPDIVSFNVMIVGYAKKG 143
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIK--FEGNACV 102
+ E + LF+ M+ G+ PD F + +C +L + + GK V+ +M K N +
Sbjct: 144 FGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVHGWMERRKPTISSNLIL 203
Query: 103 KRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
LLD+++KC ++E+ F + ++D + N ++ AK L+ + F ++ +D+
Sbjct: 204 GNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVAGCAKVGELEQARLFFYQMPCRDI 263
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSWN+++ GYA G V L+ ++M+ + P+T+++ +++A + + G+ H
Sbjct: 264 VSWNSLVTGYACRGDFASVKELI--VDMVMEKVIPDTVTMISLVSAATESGALDQGRWAH 321
Query: 222 GYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
G+V+R I L CG + + VF +++ +DV VW ++I+ G
Sbjct: 322 GWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFKEINKKDVTVWTTMITGLAFHGYGS 381
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNALI 319
AL+L + + +V P+ VT VSVL AC + QG+ S + + L+
Sbjct: 382 KALELFSE-MQEDVSPDDVTFVSVLSACSHSGLVDQGIKVFSSMTDYGIEPGVEHYGCLV 440
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMIS 351
D+ R G + +++ I MP K S W M++
Sbjct: 441 DLLARSGRLSEAKDIIDQMPMKPSRSIWGAMLN 473
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 66/121 (54%), Gaps = 10/121 (8%)
Query: 243 SVFNQLSTR-DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
++FN + ++ ++N++ISAF S + +++ L ++ + P+ T++ +L A +
Sbjct: 21 TLFNHFTPNPNLFIYNTLISAF-SSLKKIESFYLYNVLLSSGECPDKQTLLYLLQAVNFI 79
Query: 302 AALPQ--------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ + Q GL + ++ N LI +Y G ++ + ++F MP ++VS+NVMI Y
Sbjct: 80 SQVKQIHCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPSPDIVSFNVMIVGY 139
Query: 354 G 354
Sbjct: 140 A 140
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 61/151 (40%), Gaps = 30/151 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
++ G H +I ++L AFLGS L++++C WT+M+
Sbjct: 314 LDQGRWAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFKEINKKDVTVWTTMITG 373
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL----KDYRVGKDVYDYMISIK 95
GY + + LF M + V PD V ACS + +V + DY I
Sbjct: 374 LAFHGYGSKALELFSEM-QEDVSPDDVTFVSVLSACSHSGLVDQGIKVFSSMTDYGIEPG 432
Query: 96 FEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126
E C L+DL + GR+ + ++M
Sbjct: 433 VEHYGC----LVDLLARSGRLSEAKDIIDQM 459
>gi|413946633|gb|AFW79282.1| hypothetical protein ZEAMMB73_599854 [Zea mays]
Length = 863
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 168/344 (48%), Gaps = 54/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W M+G Y G +E ++L++ M+ GVRPD + P V ++C + D+R+G++V+ ++
Sbjct: 156 SWNVMVGGYGKSGLLDEALDLYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHV 215
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ G EE+D V N+L+ YAKC + +
Sbjct: 216 LRF--------------------------GFGEEVD----VLNALMTMYAKCGDVMAARK 245
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + D +SWNAM+AG+ G L + M+ ++QPN ++++ V A +
Sbjct: 246 VFDSMTVMDCISWNAMIAGHFENGECNAGLELF--LTMLHDEVQPNLMTITSVTVASGLL 303
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
V K +HG ++ I + + G + + +VF+++ TRD + W ++I
Sbjct: 304 SDVTFAKEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMI 363
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV---------LPACLKLAALPQGLGTG 311
S + ++G AL++ + V NV P+ +TI S L +KL L + G
Sbjct: 364 SGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFI 423
Query: 312 SF--VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
S+ V NA+++MY + I K+ ++F M K++VSW+ MI+ +
Sbjct: 424 SYIVVTNAILEMYAKSKRIDKAIEVFKCMHEKDVVSWSSMIAGF 467
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 110/223 (49%), Gaps = 24/223 (10%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+K+ ++D+ SWN M+ GY G +E +L M+ ++P+ + VL +C V
Sbjct: 146 FAKMPERDVFSWNVMVGGYGKSGLLDEALDLYH--RMMWAGVRPDVYTFPCVLRSCGGVP 203
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++G+ +H +VLR + + CG V+ + VF+ ++ D + WN++I+
Sbjct: 204 DWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAARKVFDSMTVMDCISWNAMIA 263
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGT 310
+G+ L+L ++ V+PN +TI SV A L+ A+ +G
Sbjct: 264 GHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEMHGLAVKRGFAG 323
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
N+LI MY G ++++R +F M ++ ++W MIS Y
Sbjct: 324 DVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISGY 366
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 124/287 (43%), Gaps = 44/287 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WT+M+ Y G+ ++ + ++ LM V PD
Sbjct: 358 TWTAMISGYEKNGFPDKALEVYALMEVNNVSPDD-------------------------- 391
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I+I AC LD+ +K + + G + +V N++++ YAK + + +
Sbjct: 392 ITIASALAACACLGSLDVGVKLHELAESKGFISYI----VVTNAILEMYAKSKRIDKAIE 447
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +KD+VSW++M+AG+ F L + D++PN+++ LAACA
Sbjct: 448 VFKCMHEKDVVSWSSMIAGFC---FNHRNFEALYYFRHMLADVKPNSVTFIAALAACAAT 504
Query: 212 KGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ GK IH +VLR I L CG + + F +DVV WN +I
Sbjct: 505 GALRSGKEIHAHVLRCGIEYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMI 564
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
+ FV G AL ++ P+ VT V++L AC + + +G
Sbjct: 565 AGFVAHGHGDTALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEG 611
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 25/164 (15%)
Query: 205 LAACAQVK------GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
L ACA G++LG A+ ++R G + VF ++ RDV WN
Sbjct: 108 LRACAHADDRHAWFGLRLGNAMLSMLVRF--------GETWHAWRVFAKMPERDVFSWNV 159
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQG 307
++ + +SG + +ALDL ++ A V+P+ T VL +C + L G
Sbjct: 160 MVGGYGKSGLLDEALDLYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFG 219
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
G V NAL+ MY +CG + +RK+F M + +SWN MI+
Sbjct: 220 FGEEVDVLNALMTMYAKCGDVMAARKVFDSMTVMDCISWNAMIA 263
Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 14/106 (13%)
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL-----GTGSFV 314
+ A GQ+ AL LL + P+ V++ C A+ GL
Sbjct: 63 LRALCSHGQLAQALWLLES---SAEPPDEDAYVALFRLCEWRRAVEPGLRACAHADDRHA 119
Query: 315 W------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
W NA++ M R G + ++F MP +++ SWNVM+ YG
Sbjct: 120 WFGLRLGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYG 165
>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 905
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 93/329 (28%), Positives = 149/329 (45%), Gaps = 54/329 (16%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G+ E +Y M GV + + ACS K GK ++ + I +G++
Sbjct: 309 GHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSH---ISEDGHSS-- 363
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
D + N+LI YA+C L + F + ++DL+S
Sbjct: 364 -------------------------DVQIGNALISMYARCGDLPKARELFYTMPKRDLIS 398
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
WNA++AGYA R E L +M+ ++P ++ +L+ACA GK IH
Sbjct: 399 WNAIIAGYARREDRGEAMRLYKQMQ--SEGVKPGRVTFLHLLSACANSSAYADGKMIHED 456
Query: 224 VLRHHI----HLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
+LR I HL+ A CG ++ + +VF RDV+ WNS+I+ + G A
Sbjct: 457 ILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETA 516
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWNALIDM 321
L +++ ++P+ +T SVL C AL GL + NALI+M
Sbjct: 517 YKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINM 576
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
Y RCG++Q +R +F + H++++SW MI
Sbjct: 577 YIRCGSLQDARNVFHSLQHRDVMSWTAMI 605
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 102/392 (26%), Positives = 164/392 (41%), Gaps = 75/392 (19%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNVLG 44
++HA ++ GV FL + L+ ++ +W S++ Y G
Sbjct: 48 RIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQG 107
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
+ ++ LF M + G P+ + AC + GK ++ +I ++
Sbjct: 108 FKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQ------- 160
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
+D V NSL+ Y KC L + F+ I +D+VS+
Sbjct: 161 -----------------------RDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSY 197
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
N ML YA + +E L +M + P+ ++ +L A + GK IH
Sbjct: 198 NTMLGLYAQKAYVKECLGLFGQMS--SEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLT 255
Query: 225 ----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
L I + TA CG V + F ++ RDVVV+N++I+A + G V+A
Sbjct: 256 VEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAF 315
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL---------GTGSFVW--NALIDMY 322
+ + V N T +S+L AC AL G G S V NALI MY
Sbjct: 316 EQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMY 375
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
RCG + K+R++F MP ++L+SWN +I+ Y
Sbjct: 376 ARCGDLPKARELFYTMPKRDLISWNAIIAGYA 407
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/395 (22%), Positives = 171/395 (43%), Gaps = 77/395 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
+E G ++H+ +I G + + + LL ++ ++ +M+G+
Sbjct: 144 LENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGL 203
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y Y +E + LF M +G+ PD K Y ++ +
Sbjct: 204 YAQKAYVKECLGLFGQMSSEGISPD--------------------KVTYINLL------D 237
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
A +LD + ++ + GL + D V +L+ +C + + F I +
Sbjct: 238 AFTTPSMLDEGKRIHKLTVEEGL----NSDIRVGTALVTMCVRCGDVDSAKQAFKGIADR 293
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNTISLSGVLAACAQVKGVKLGK 218
D+V +NA++A A G E ++ +++D + N + +L AC+ K ++ GK
Sbjct: 294 DVVVYNALIAALAQHGHNVEA---FEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGK 350
Query: 219 AIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
IH ++ I + CG + + +F + RD++ WN+II+ + R
Sbjct: 351 LIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARRE 410
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLGTGSFVWN 316
+A+ L + + VKP VT + +L AC +A L G+ + + N
Sbjct: 411 DRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLAN 470
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
AL++MY RCG++ +++ +F ++++SWN MI+
Sbjct: 471 ALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIA 505
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/384 (20%), Positives = 159/384 (41%), Gaps = 77/384 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G +H+H+ G +G+ L+ ++ +W +++
Sbjct: 346 LEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAG 405
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y E + L+ M +GV+P + AC+ Y GK +++ ++ + N
Sbjct: 406 YARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSN 465
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ L++++ +CG + +FE + +
Sbjct: 466 GHLANALMNMYRRCGSLMEAQNVFE------------------------------GTQAR 495
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D++SWN+M+AG+A G E L EM+ +++P+ I+ + VL+ C + ++LGK
Sbjct: 496 DVISWNSMIAGHAQHGSYETAYKLFQEMQ--NEELEPDNITFASVLSGCKNPEALELGKQ 553
Query: 220 IHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IHG + L+ ++L A CG + + +VF+ L RDV+ W ++I G+
Sbjct: 554 IHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGE 613
Query: 269 VVDALDLLRDVIVANVK-PNTVTIVSVLPACLKLAALPQGLGTGSFV------------W 315
+ A++L + + P+ T S+L AC + +G S + +
Sbjct: 614 DMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHY 673
Query: 316 NALIDMYGRCGAIQKSRKIFVLMP 339
L+ + GR Q++ + MP
Sbjct: 674 GCLVGLLGRARRFQEAETLINQMP 697
>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 820
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 102/398 (25%), Positives = 174/398 (43%), Gaps = 74/398 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ELG VHA +++ G F+ + LL ++ +W +M+
Sbjct: 237 LELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISG 296
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
G + E +LF M + P+ + V KA +L D +GK+V + + EGN
Sbjct: 297 CTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGN 356
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V L+D++ KCG + +F D +F+ +C +
Sbjct: 357 VLVGTALIDMYSKCGSLHDARSVF---DTNFI------------------NCGVN----- 390
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
WNAM++GY+ G +E L ++M Q + + + V A A K ++ G+
Sbjct: 391 --TPWNAMISGYSQSGCSQEALELY--VQMCQNGITSDLYTYCSVFNAIAASKSLQFGRV 446
Query: 220 IHGYVLRHHIHLS------------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
+HG VL+ + L + CGF+ VF+++ RD+V W ++++A+ +S
Sbjct: 447 VHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSS 506
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWN 316
+AL + PN T SVL +C L L GL T + +
Sbjct: 507 LGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIES 566
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
ALIDMY +CG+I ++ K+F + + ++VSW +IS Y
Sbjct: 567 ALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYA 604
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 154/343 (44%), Gaps = 57/343 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y+ G +E + L+ M G+ D + V+ A + K + G+ V+
Sbjct: 393 WNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHG--- 449
Query: 93 SIKFEGNACVKRPLLDLFIKCG-RMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ +KCG + + S VNN++ D Y+KC +L+
Sbjct: 450 ----------------MVLKCGLDLMVVS-----------VNNAIADAYSKCGFLEDVRK 482
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +++++D+VSW ++ Y+ EE L M + PN + S VL +CA +
Sbjct: 483 VFDRMEERDIVSWTTLVTAYSQSSLGEEA--LATFCLMREEGFAPNQFTFSSVLISCASL 540
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ G+ +HG + + I + CG + + VF+++S D+V W +II
Sbjct: 541 CFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAII 600
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL--------GTGS 312
S + + G V DAL L R + ++ +K N VT++ VL AC + +GL G G
Sbjct: 601 SGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGV 660
Query: 313 FV----WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ +ID+ GR G + + + MP N + W ++
Sbjct: 661 VPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLL 703
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 119/259 (45%), Gaps = 35/259 (13%)
Query: 123 FEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTN 182
FE+ D L N++ Y+KC + + F ++ Q+++ SW M+ G G +
Sbjct: 149 FEDKDLMVLFNHA-AHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFK 207
Query: 183 LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH----HIHLSTAC--- 235
EM+ + + P+ + S ++ +C + ++LGK +H ++ HI +ST+
Sbjct: 208 FF--CEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNM 265
Query: 236 ----GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI 291
G + S VFN ++ + V WN++IS +G ++A DL + PN T+
Sbjct: 266 YAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTL 325
Query: 292 VSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340
VSV A KL A G+ V ALIDMY +CG++ +R +F
Sbjct: 326 VSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVF----D 381
Query: 341 KNLVS------WNVMISVY 353
N ++ WN MIS Y
Sbjct: 382 TNFINCGVNTPWNAMISGY 400
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 144/347 (41%), Gaps = 57/347 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT M+ G + + F M++ G+ PD F + ++C L +GK V+ +
Sbjct: 188 SWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQI 247
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F + V+ SL++ YAK ++ S+
Sbjct: 248 VMRGFATH------------------------------IFVSTSLLNMYAKLGSIEDSYW 277
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ + + + VSWNAM++G G E +L + M PN +L V A ++
Sbjct: 278 VFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLF--VRMKNGACTPNMYTLVSVSKAVGKL 335
Query: 212 KGVKLGK---------AIHGYVL--RHHIHLSTACGFVICSCSVF--NQLSTRDVVVWNS 258
V +GK I G VL I + + CG + + SVF N ++ WN+
Sbjct: 336 VDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNA 395
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW--- 315
+IS + +SG +AL+L + + + T SV A +L G V
Sbjct: 396 MISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCG 455
Query: 316 ---------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
NA+ D Y +CG ++ RK+F M +++VSW +++ Y
Sbjct: 456 LDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAY 502
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 24/194 (12%)
Query: 182 NLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-------------HH 228
N + + + +T Q L VL CA+ ++ KA+HG VL+ H
Sbjct: 102 NRPESIGISETYQQTQVQDLIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHA 161
Query: 229 IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288
H+ + C +C VF+++ R+V W +I G D +++ + + P+
Sbjct: 162 AHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDK 221
Query: 289 VTIVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVL 337
+++ +C+ L +L +G T FV +L++MY + G+I+ S +F +
Sbjct: 222 FAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNM 281
Query: 338 MPHKNLVSWNVMIS 351
M N VSWN MIS
Sbjct: 282 MTEHNQVSWNAMIS 295
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 131/321 (40%), Gaps = 78/321 (24%)
Query: 1 MELGIQVHAHLIVCGVEL---------------CAFLGSQLLEVF--------CNWTSMM 37
++ G VH ++ CG++L C FL + +VF +WT+++
Sbjct: 441 LQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFL-EDVRKVFDRMEERDIVSWTTLV 499
Query: 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
Y+ EE + F LM ++G P+ F V +C+ L G+ V+ + +
Sbjct: 500 TAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLD 559
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
C++ L+D++ KCG + +F+ KI
Sbjct: 560 TEKCIESALIDMYAKCGSITEAGKVFD------------------------------KIS 589
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
D+VSW A+++GYA G E+ L ME+ + ++ N ++L VL AC+ V+ G
Sbjct: 590 NPDIVSWTAIISGYAQHGLVEDALQLFRRMEL--SGIKANAVTLLCVLFACSHGGMVEEG 647
Query: 218 KAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLR 277
L + + G V ++ + II R G++ DA++ +R
Sbjct: 648 -------LFYFQQMEDGYGVV------------PEMEHYACIIDLLGRVGRLDDAMEFIR 688
Query: 278 DVIVANVKPNTVTIVSVLPAC 298
+ ++PN + ++L C
Sbjct: 689 KM---PMEPNEMVWQTLLGGC 706
>gi|297798412|ref|XP_002867090.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312926|gb|EFH43349.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 803
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 108/399 (27%), Positives = 192/399 (48%), Gaps = 81/399 (20%)
Query: 1 MELGIQVHAHLI----VCGVELCAFLGSQLLEVFCNW-----------------TSMMGM 39
+E G ++HA +I V V +C L S +++ C+W SM+
Sbjct: 142 LEEGKKIHAMVIKLRFVSDVYVCNSLISLYMKLGCSWDAEKVFEEMPERDIVSWNSMISG 201
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y L + LF M+ G +PD F ACS + +GK+++ + +
Sbjct: 202 YLALEDGFRSLMLFKEMLKFGFKPDRFSTMSALGACSHVYSPNMGKELHCHAV------- 254
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK--FSKIK 157
R I +G D +V S++D Y+K Y +VS+ + F I
Sbjct: 255 ---------------RSRIETG-------DVMVMTSILDMYSK--YGEVSYAERIFKCII 290
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
Q+++V+WN ++ YA + +M Q +QP+ I+L +L ACA ++G
Sbjct: 291 QRNIVAWNVLIGCYARNSRVTDAFLCFQKMSE-QNGLQPDVITLINLLPACAILEG---- 345
Query: 218 KAIHGYVLRH----HIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
+ IHGY +R HI L TA G + + +F++++ ++++ WNSII+A+V++
Sbjct: 346 RTIHGYAMRRGFLPHIVLDTALIDMYGEWGQLKSAEVIFDRIAEKNLISWNSIIAAYVQN 405
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVW 315
G+ AL+L + + +++ P++ TI S+LPA + +L +G G+ + +
Sbjct: 406 GKNYSALELFQKLWDSSLLPDSTTIASILPAYAESLSLSEGRQIHAYIVKSRYGSNTIIL 465
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
N+L+ MY CG ++ +RK F + K++VSWN +I Y
Sbjct: 466 NSLVHMYAMCGDLEDARKCFNHVLLKDVVSWNSIIMAYA 504
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/343 (27%), Positives = 161/343 (46%), Gaps = 56/343 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W M+ + G Y E + L+ M+ GV+ D F P V K+ + + GK ++ +I
Sbjct: 94 WNVMIKGFTSCGLYFEALQLYCRMVFSGVKADSFTYPFVIKSVTGISSLEEGKKIHAMVI 153
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
++F + V L+ L++K G +FEEM
Sbjct: 154 KLRFVSDVYVCNSLISLYMKLGCSWDAEKVFEEM-------------------------- 187
Query: 153 FSKIKQKDLVSWNAMLAGY-AL-GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
++D+VSWN+M++GY AL GFR +L+ EM++ +P+ S L AC+
Sbjct: 188 ----PERDIVSWNSMISGYLALEDGFR----SLMLFKEMLKFGFKPDRFSTMSALGACSH 239
Query: 211 VKGVKLGKAIHGYVLRHHIH------------LSTACGFVICSCSVFNQLSTRDVVVWNS 258
V +GK +H + +R I + + G V + +F + R++V WN
Sbjct: 240 VYSPNMGKELHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFKCIIQRNIVAWNV 299
Query: 259 IISAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPACLKLA-------ALPQGLGT 310
+I + R+ +V DA + + N ++P+ +T++++LPAC L A+ +G
Sbjct: 300 LIGCYARNSRVTDAFLCFQKMSEQNGLQPDVITLINLLPACAILEGRTIHGYAMRRGFLP 359
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ ALIDMYG G ++ + IF + KNL+SWN +I+ Y
Sbjct: 360 HIVLDTALIDMYGEWGQLKSAEVIFDRIAEKNLISWNSIIAAY 402
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 120/261 (45%), Gaps = 29/261 (11%)
Query: 106 LLDLFIKCGRMEITSGLFEEMDQDFL----VNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
L++L C +E + M + FL ++ +LID Y + LK + F +I +K+L
Sbjct: 333 LINLLPACAILEGRTIHGYAMRRGFLPHIVLDTALIDMYGEWGQLKSAEVIFDRIAEKNL 392
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
+SWN+++A Y G L ++ + + P++ +++ +L A A+ + G+ IH
Sbjct: 393 ISWNSIIAAYVQNGKNYSALELFQKL--WDSSLLPDSTTIASILPAYAESLSLSEGRQIH 450
Query: 222 GYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y+++ +H+ CG + + FN + +DVV WNSII A+ G
Sbjct: 451 AYIVKSRYGSNTIILNSLVHMYAMCGDLEDARKCFNHVLLKDVVSWNSIIMAYAVHGFGR 510
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPAC------------LKLAALPQGLGTGSFVWNAL 318
++ L ++I + V PN T S+L AC + G+ G + +
Sbjct: 511 ISVCLFSEMIASKVDPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGYM 570
Query: 319 IDMYGRCGAIQKSRKIFVLMP 339
+D+ GR G +++ MP
Sbjct: 571 LDLIGRTGNFSSAKRFIREMP 591
>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 160/322 (49%), Gaps = 31/322 (9%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLF--YLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
+W +++ Y G + E + L+ + +D G + F V C +LK+ ++ K V+
Sbjct: 162 SWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGF--NAFSFAGVLILCVKLKELQLAKQVHG 219
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKV 148
++ F N + ++D + KCG M LF+EM +D +++ YAK +
Sbjct: 220 QVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNS 279
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
+ F ++ +K+ VSW+A+++GYA E + +M++ + P + S L AC
Sbjct: 280 ASELFHQMPEKNPVSWSALISGYARNSLGHEALDYF--TKMMKFGINPEQYTFSSCLCAC 337
Query: 209 AQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTR-DVVVW 256
A + +K GK +HGY++R + I + + CG + SC VF+ + + DVVVW
Sbjct: 338 ASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVW 397
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL-------- 308
N++ISA ++G A+ + D++ + +KP+ +T + +L AC + +GL
Sbjct: 398 NTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTY 457
Query: 309 GTGSFV----WNALIDMYGRCG 326
G F + LID+ GR G
Sbjct: 458 DHGVFPDQEHYACLIDLLGRAG 479
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/365 (24%), Positives = 167/365 (45%), Gaps = 58/365 (15%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE-GNACV 102
G E ++ + +G+R + + + C++ K ++ GK V+ ++ F+ V
Sbjct: 41 GRLPEALSYLDRLAQRGIRLPTGIFVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRPTTIV 100
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
L+ ++ +CGR +F++M ++ N ++ YAK + + F ++ +KD+
Sbjct: 101 ANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDV 160
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSWN ++ YA G E L + + DM N S +GVL C ++K ++L K +H
Sbjct: 161 VSWNTIVLAYAKQGCFNEAIGLYRDFRRL--DMGFNAFSFAGVLILCVKLKELQLAKQVH 218
Query: 222 GYVL----RHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
G VL ++ LS++ CG + C+ ++F+++ +D+ W +I+S + + G +
Sbjct: 219 GQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMN 278
Query: 271 -------------------------------DALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ALD ++ + P T S L AC
Sbjct: 279 SASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACA 338
Query: 300 KLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWN 347
+AAL G + V ++LIDMY +CG ++ S +F LM +K ++V WN
Sbjct: 339 SIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWN 398
Query: 348 VMISV 352
MIS
Sbjct: 399 TMISA 403
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 114/275 (41%), Gaps = 52/275 (18%)
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFL-----VNNSLIDFYAKCRYLKVSHC---- 151
C+ + LLDL + GR+ + + Q + + L+ AK +Y K C
Sbjct: 29 CIAQSLLDLSSQ-GRLPEALSYLDRLAQRGIRLPTGIFVDLLRLCAKAKYFKGGKCVHLH 87
Query: 152 -KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
K + K+ + N ++ Y G E + D+M + N S + +LA A+
Sbjct: 88 LKHTGFKRPTTIVANHLIGMYFECGRDVEARKVFDKMSV------RNLYSWNHMLAGYAK 141
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
+ V + + F+++ +DVV WN+I+ A+ + G
Sbjct: 142 LGDVNNARKL------------------------FDRMMEKDVVSWNTIVLAYAKQGCFN 177
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNALI 319
+A+ L RD ++ N + VL C+KL L G + + ++++
Sbjct: 178 EAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIV 237
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
D Y +CG ++ +R +F M K++ +W ++S Y
Sbjct: 238 DAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYA 272
>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g68930
gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 743
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 98/405 (24%), Positives = 186/405 (45%), Gaps = 63/405 (15%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+ LG Q+H +I G E +GS LL ++ N + S+MG
Sbjct: 155 VSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGG 214
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
G E+ + LF +G+ D + K L + K+ + +K +G
Sbjct: 215 LLACGMIEDALQLF-----RGMEKDSVSWAAMIKG---LAQNGLAKEAIECFREMKVQGL 266
Query: 100 ACVKRPLLDLFIKCGRM-------EITSGLFEEMDQDFL-VNNSLIDFYAKCRYLKVSHC 151
+ P + CG + +I + + QD + V ++LID Y KC+ L +
Sbjct: 267 KMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKT 326
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++KQK++VSW AM+ GY G EE + ++M ++ + P+ +L ++ACA V
Sbjct: 327 VFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIF--LDMQRSGIDPDHYTLGQAISACANV 384
Query: 212 KGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
++ G HG + H++ +S + CG + S +FN+++ RD V W +++
Sbjct: 385 SSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMV 444
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----LGTGSFV- 314
SA+ + G+ V+ + L ++ +KP+ VT+ V+ AC + + +G L T +
Sbjct: 445 SAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGI 504
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMPH-KNLVSWNVMISV 352
++ +ID++ R G ++++ + MP + + W ++S
Sbjct: 505 VPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSA 549
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 149/296 (50%), Gaps = 30/296 (10%)
Query: 83 VGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYA 141
+GK ++ +I + FE V PLL ++ G + +F +D ++ ++ NSL+
Sbjct: 157 LGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLL 216
Query: 142 KCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM--IQTDMQPNTI 199
C ++ + F + +KD VSW AM+ G A G +E EM++ ++ D P
Sbjct: 217 ACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYP--- 272
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTACGFVICSC-------SVFNQL 248
VL AC + + GK IH ++R HI++ +A + C C +VF+++
Sbjct: 273 -FGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRM 331
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG- 307
++VV W +++ + ++G+ +A+ + D+ + + P+ T+ + AC +++L +G
Sbjct: 332 KQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGS 391
Query: 308 ------LGTGSF----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ +G V N+L+ +YG+CG I S ++F M ++ VSW M+S Y
Sbjct: 392 QFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAY 447
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 121/286 (42%), Gaps = 54/286 (18%)
Query: 122 LFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEV 180
+F+ + Q L + N+L+ Y+K + F K+ +D V+WN ++ GY+L G
Sbjct: 63 VFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAA 122
Query: 181 TNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-----------HHI 229
+ M M ++L +L + V LGK IHG V++ +
Sbjct: 123 VKAYNTM-MRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLL 181
Query: 230 HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLR------------ 277
++ G + + VF L R+ V++NS++ + G + DAL L R
Sbjct: 182 YMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAM 241
Query: 278 ------------------DVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS------- 312
++ V +K + SVLPAC L A+ +G +
Sbjct: 242 IKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNF 301
Query: 313 ----FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+V +ALIDMY +C + ++ +F M KN+VSW M+ YG
Sbjct: 302 QDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYG 347
>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
Length = 708
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 112/442 (25%), Positives = 191/442 (43%), Gaps = 92/442 (20%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN------------------------WTSMMG 38
L Q+H+ +IV G AFL ++++ V+ W S++
Sbjct: 49 LSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILR 108
Query: 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
GY EE + ++ M GV D F P V +AC+ + ++ + V+ +++ + F+
Sbjct: 109 ANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQW 168
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKIK 157
N V L+ ++ K GRM+ +FE M V+ N+++ YA + F +
Sbjct: 169 NLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMG 228
Query: 158 ----QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG 213
+ +LV+W ++L+ +A G E L M M + +L+ VL+ +
Sbjct: 229 SAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRM--RGIGATAEALAVVLSVSVDLAA 286
Query: 214 VKLGKAIHGYVLR------------------HHIHLSTA--------------------- 234
GK IHGYV++ H +++ A
Sbjct: 287 FDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISS 346
Query: 235 ---CGFVICSCSVFNQLSTRD--------VVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283
G+ + ++F QL D VV W+++I F GQ +AL+L R + +A
Sbjct: 347 YADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAK 406
Query: 284 VKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSR 332
VK N+VTI SVL C +LAAL G + V N LI+MY + G+ ++
Sbjct: 407 VKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGN 466
Query: 333 KIFVLMPHKNLVSWNVMISVYG 354
+F + +K+L+SWN M++ YG
Sbjct: 467 LVFEKIENKDLISWNTMVAGYG 488
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/369 (24%), Positives = 173/369 (46%), Gaps = 36/369 (9%)
Query: 17 ELCAFLGSQLLEV-FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKAC 75
E+ +GS LE WTS++ + G + E + LF M +G+ V
Sbjct: 222 EMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVS 281
Query: 76 SELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-N 134
+L + GK ++ Y++ FE VK L+ L+ K G + LF E+ +V+ N
Sbjct: 282 VDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWN 341
Query: 135 SLIDFYAKCRYLKVSHCKFSKIKQKD--------LVSWNAMLAGYALGGFREEVTNLLDE 186
+LI YA + + F ++++ D +VSW+A++ G+A G EE L
Sbjct: 342 ALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRR 401
Query: 187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTAC 235
M++ + ++ N+++++ VL+ CA++ + LG+ IHG+V+R I++ T
Sbjct: 402 MQLAK--VKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKS 459
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
G VF ++ +D++ WN++++ + G +A+ +I +P+ VT V+VL
Sbjct: 460 GSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVL 519
Query: 296 PACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFVLMP-HKN 342
AC + +G + + ++D+ GR G +Q++ K+ MP N
Sbjct: 520 SACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPN 579
Query: 343 LVSWNVMIS 351
W +++
Sbjct: 580 ACVWGALLN 588
>gi|449453101|ref|XP_004144297.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g26540-like [Cucumis sativus]
gi|449521874|ref|XP_004167954.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g26540-like [Cucumis sativus]
Length = 697
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 96/390 (24%), Positives = 178/390 (45%), Gaps = 48/390 (12%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNVLG 44
Q+H H++ CG L S L++V+ +W ++ Y +G
Sbjct: 181 QIHGHIVKCGFVGNVILESSLVDVYGKCRLMNDARSMFDEIQNRNDVSWNVIVRRYLEVG 240
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
+E V++F+ M + + P F ACS + G ++ ++ + E N +
Sbjct: 241 NGKEAVSMFFQMFRESLMPSSFTFSNALIACSRMAALIEGGQIHGIVVKVGLEENEVISS 300
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
L+D+++KCG + +F + L++ S++ YA + + F+++ +++++S
Sbjct: 301 SLIDMYVKCGTLANAHQVFTQPSSRNLISWTSMVYAYATSGDVLKARELFNEMPERNVIS 360
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
WNAMLAGY EE + M D+ T+ L +L C V+ GK +HG+
Sbjct: 361 WNAMLAGYIHSSQWEEALEFVHLMRSSIKDIDRTTLCL--ILNVCTGSSDVERGKQVHGF 418
Query: 224 VLRH----HIHLSTA-------CGFVICSCSVFNQLST-RDVVVWNSIISAFVRSGQVVD 271
V R ++++ A CG + + F Q+S RD V WN++++A R G
Sbjct: 419 VYRTGFYANLYIGNALLDMYGKCGNLKSAKVWFYQMSQWRDKVSWNALLTAHARHGMSEQ 478
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------VWNALID 320
A+ + ++ + PN T ++L AC + AL G F + AL+D
Sbjct: 479 AMTIFSEMQL-ETDPNNFTFATLLGACANMFALEHGKQIHGFMVRNNYAIDIVLTGALVD 537
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
MY +C ++ + K+F + +++V WN +I
Sbjct: 538 MYCKCRELKYALKVFEHVASRDVVLWNSII 567
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 126/247 (51%), Gaps = 25/247 (10%)
Query: 130 FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
FL+N + I+ Y KC LK + F ++ Q+D SWNAM+ Y G+ E NL +++
Sbjct: 95 FLLNRA-IEAYGKCGCLKDARELFDEMPQRDGGSWNAMITAYTQNGYALEALNLY--LDL 151
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTACGFVICSC--- 242
++ + ++L+ +L +C V + + IHG++++ ++ L ++ V C
Sbjct: 152 NKSGVYATEVTLASILRSCGSVLALHFSRQIHGHIVKCGFVGNVILESSLVDVYGKCRLM 211
Query: 243 ----SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
S+F+++ R+ V WN I+ ++ G +A+ + + ++ P++ T + L AC
Sbjct: 212 NDARSMFDEIQNRNDVSWNVIVRRYLEVGNGKEAVSMFFQMFRESLMPSSFTFSNALIAC 271
Query: 299 LKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
++AAL + GL + ++LIDMY +CG + + ++F +NL+SW
Sbjct: 272 SRMAALIEGGQIHGIVVKVGLEENEVISSSLIDMYVKCGTLANAHQVFTQPSSRNLISWT 331
Query: 348 VMISVYG 354
M+ Y
Sbjct: 332 SMVYAYA 338
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/377 (20%), Positives = 155/377 (41%), Gaps = 86/377 (22%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y GY E +NL+ + GV + ++C + + ++ ++
Sbjct: 127 SWNAMITAYTQNGYALEALNLYLDLNKSGVYATEVTLASILRSCGSVLALHFSRQIHGHI 186
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F GN ++ L+D++ KC M +F+E
Sbjct: 187 VKCGFVGNVILESSLVDVYGKCRLMNDARSMFDE-------------------------- 220
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
I+ ++ VSWN ++ Y G +E ++ +M + + P++ + S L AC+++
Sbjct: 221 ----IQNRNDVSWNVIVRRYLEVGNGKEAVSMF--FQMFRESLMPSSFTFSNALIACSRM 274
Query: 212 KGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ G IHG V++ I + CG + + VF Q S+R+++ W S++
Sbjct: 275 AALIEGGQIHGIVVKVGLEENEVISSSLIDMYVKCGTLANAHQVFTQPSSRNLISWTSMV 334
Query: 261 SAFVRSGQVVDALDLLRDVIVANV-------------------------------KPNTV 289
A+ SG V+ A +L ++ NV +
Sbjct: 335 YAYATSGDVLKARELFNEMPERNVISWNAMLAGYIHSSQWEEALEFVHLMRSSIKDIDRT 394
Query: 290 TIVSVLPACLKLAALPQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIFVLM 338
T+ +L C + + +G FV+ NAL+DMYG+CG ++ ++ F M
Sbjct: 395 TLCLILNVCTGSSDVERGKQVHGFVYRTGFYANLYIGNALLDMYGKCGNLKSAKVWFYQM 454
Query: 339 PH-KNLVSWNVMISVYG 354
++ VSWN +++ +
Sbjct: 455 SQWRDKVSWNALLTAHA 471
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 86/335 (25%), Positives = 147/335 (43%), Gaps = 62/335 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y +EE + +LM D + C+ D GK V+ ++
Sbjct: 360 SWNAMLAGYIHSSQWEEALEFVHLMRSSIKDIDRTTLCLILNVCTGSSDVERGKQVHGFV 419
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F N + N+L+D Y KC LK +
Sbjct: 420 YRTGFYAN------------------------------LYIGNALLDMYGKCGNLKSAKV 449
Query: 152 KFSKIKQ-KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ Q +D VSWNA+L +A G E+ + EM++ +TD PN + + +L ACA
Sbjct: 450 WFYQMSQWRDKVSWNALLTAHARHGMSEQAMTIFSEMQL-ETD--PNNFTFATLLGACAN 506
Query: 211 VKGVKLGKAIHGYVLRHH----IHLSTACGFVICSC-------SVFNQLSTRDVVVWNSI 259
+ ++ GK IHG+++R++ I L+ A + C C VF +++RDVV+WNSI
Sbjct: 507 MFALEHGKQIHGFMVRNNYAIDIVLTGALVDMYCKCRELKYALKVFEHVASRDVVLWNSI 566
Query: 260 ISAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPACLKLAALPQGLGTGSF----- 313
I + + + A+ L + + + +KP+ VT +L ACL + LG F
Sbjct: 567 ILGCCHNRRDMLAIKLFQLMTMEEGIKPDHVTFQGILLACLHENLVE--LGRKYFDSMSE 624
Query: 314 ---------VWNALIDMYGRCGAIQKSRKIFVLMP 339
+ ++++YG+ G + + K MP
Sbjct: 625 KFCVIPRLEHYECMVELYGQHGNMDELEKFINNMP 659
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/240 (18%), Positives = 96/240 (40%), Gaps = 54/240 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF----------------------CNWTSMMG 38
+E G QVH + G ++G+ LL+++ +W +++
Sbjct: 409 VERGKQVHGFVYRTGFYANLYIGNALLDMYGKCGNLKSAKVWFYQMSQWRDKVSWNALLT 468
Query: 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
+ G E+ + +F M P++F + AC+ + GK ++ +M+ +
Sbjct: 469 AHARHGMSEQAMTIFSEM-QLETDPNNFTFATLLGACANMFALEHGKQIHGFMVRNNYAI 527
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
+ + L+D++ K CR LK + F +
Sbjct: 528 DIVLTGALVDMYCK------------------------------CRELKYALKVFEHVAS 557
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+D+V WN+++ G R+ + L ++ ++ ++P+ ++ G+L AC V+LG+
Sbjct: 558 RDVVLWNSIILG-CCHNRRDMLAIKLFQLMTMEEGIKPDHVTFQGILLACLHENLVELGR 616
>gi|242092246|ref|XP_002436613.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
gi|241914836|gb|EER87980.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
Length = 683
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 138/248 (55%), Gaps = 24/248 (9%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D V NSL+D YAK L+ + F +I +++VSW +ML+G GF + L ++M
Sbjct: 166 DGFVMNSLVDMYAKAGDLECARKVFERIPGRNVVSWTSMLSGCVQNGFAADGLLLFNKMR 225
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI-----------HLSTACGF 237
Q ++ P+ +++ V+ AC+ + G+ G+ +HG V++ + + CG
Sbjct: 226 --QDNVPPSEYTIATVITACSALIGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGE 283
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ + VF++LS D+V+W ++I + ++G +DAL L D AN+ PN+VTI +VL A
Sbjct: 284 LEDAQCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKKFANIVPNSVTIATVLSA 343
Query: 298 CLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
+L A+ GL + V NAL+DMY +C A+ ++ +IF + +K++V+W
Sbjct: 344 SAQLRDLSLGRSIHGIAVKLGLVEYTVVVNALVDMYAKCQAVSEANRIFGSISNKDVVAW 403
Query: 347 NVMISVYG 354
N M+S Y
Sbjct: 404 NSMLSGYA 411
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 154/349 (44%), Gaps = 62/349 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ G+ + + LF M V P + V ACS L G+ ++ +
Sbjct: 200 SWTSMLSGCVQNGFAADGLLLFNKMRQDNVPPSEYTIATVITACSALIGLHQGRWMHGSV 259
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I N+ ++ +L+D Y KC L+ + C
Sbjct: 260 IKQGLMSNS------------------------------FISAALLDMYVKCGELEDAQC 289
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ----TDMQPNTISLSGVLAA 207
F ++ DLV W M+ GY G N LD + + ++ PN+++++ VL+A
Sbjct: 290 VFDELSYIDLVLWTTMIVGYTQNG------NPLDALRLFLDKKFANIVPNSVTIATVLSA 343
Query: 208 CAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVW 256
AQ++ + LG++IHG V+ + + C V + +F +S +DVV W
Sbjct: 344 SAQLRDLSLGRSIHGIAVKLGLVEYTVVVNALVDMYAKCQAVSEANRIFGSISNKDVVAW 403
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALP 305
NS++S + + DAL L + + + P+ +++V L A + L A+
Sbjct: 404 NSMLSGYAENNMCNDALMLFKQMSLKGPSPDAISVVHALSASVCLGDLLIGKSFHGYAVK 463
Query: 306 QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ +V AL+++Y +CG + +R++F M +N V+W MI YG
Sbjct: 464 HAFLSNIYVSTALLNLYNKCGDLPSARRVFDEMNDRNSVTWCAMIGGYG 512
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 130/277 (46%), Gaps = 43/277 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT+M+ Y G + + LF + P+ V A ++L+D +G+ ++
Sbjct: 302 WTTMIVGYTQNGNPLDALRLFLDKKFANIVPNSVTIATVLSASAQLRDLSLGRSIHG--- 358
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ +K G +E T +V N+L+D YAKC+ + ++
Sbjct: 359 ----------------IAVKLGLVEYT-----------VVVNALVDMYAKCQAVSEANRI 391
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I KD+V+WN+ML+GYA + L +M + P+ IS+ L+A +
Sbjct: 392 FGSISNKDVVAWNSMLSGYAENNMCNDALMLFKQMSL--KGPSPDAISVVHALSASVCLG 449
Query: 213 GVKLGKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ +GK+ HGY ++H +I++STA CG + + VF++++ R+ V W ++I
Sbjct: 450 DLLIGKSFHGYAVKHAFLSNIYVSTALLNLYNKCGDLPSARRVFDEMNDRNSVTWCAMIG 509
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ G ++DL +++ V PN V S+L C
Sbjct: 510 GYGMQGDSAGSIDLFGEMLKDGVHPNDVAFTSILSTC 546
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 73/195 (37%), Gaps = 32/195 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W SM+ Y + + LF M KG PD A L D +GK + Y +
Sbjct: 403 WNSMLSGYAENNMCNDALMLFKQMSLKGPSPDAISVVHALSASVCLGDLLIGKSFHGYAV 462
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F N V+ +L++ Y KC L +
Sbjct: 463 KHAFLSN------------------------------IYVSTALLNLYNKCGDLPSARRV 492
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ ++ V+W AM+ GY + G +L EM ++ + PN ++ + +L+ C+
Sbjct: 493 FDEMNDRNSVTWCAMIGGYGMQGDSAGSIDLFGEM--LKDGVHPNDVAFTSILSTCSHTG 550
Query: 213 GVKLGKAIHGYVLRH 227
V K + +H
Sbjct: 551 MVTAAKRYFDSMAQH 565
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP---NTV 289
A G + + VF+ D + ++ V++ + +A+ L +D+ P +
Sbjct: 75 AALGDLASARMVFDGTPRPDAYSYGVMLWCLVQAERHAEAVALHQDMRRRRPCPEAQDDF 134
Query: 290 TIVSVLPACLKLAALPQGL----------GTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+ L AC++ A G G FV N+L+DMY + G ++ +RK+F +P
Sbjct: 135 VLSLALKACIRSADYGYGTRLHCDAVKVGGADGFVMNSLVDMYAKAGDLECARKVFERIP 194
Query: 340 HKNLVSWNVMIS 351
+N+VSW M+S
Sbjct: 195 GRNVVSWTSMLS 206
>gi|225460139|ref|XP_002275897.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
chloroplastic-like [Vitis vinifera]
Length = 725
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 99/378 (26%), Positives = 181/378 (47%), Gaps = 42/378 (11%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRP 63
G Q+H H+ + G+E FL ++L+ ++ TS + + G ++ + + + +R
Sbjct: 170 GKQIHVHIRINGLENNEFLRTKLVHMY---TSCGSLEDARGVFDGVSSKSVYTWNALLRG 226
Query: 64 DHFVCPKVYKAC----SELKDYRVGKDVYDYMISIK-FEGNACVKRPLLDLFIKCGRMEI 118
+ + Y+ SE+++ V +VY + IK F G ++ L K + I
Sbjct: 227 NVISGRRHYREALSTYSEMRELGVELNVYSFSCMIKSFAGATAFRQGL-----KAHALLI 281
Query: 119 TSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFRE 178
+GL + ++ SLID Y KC +K++ F +I ++D+V W AM+AG+ +
Sbjct: 282 KNGLVDSS----ILRTSLIDMYFKCGKIKLARLMFEEIVERDVVVWGAMIAGFGHNRLQR 337
Query: 179 EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH---------- 228
E L M + + PN++ ++ +L +V KLG+ +H YV++
Sbjct: 338 EALEYLRWMR--REGICPNSVIMTTILPVIGEVGAWKLGREVHAYVVKTKSYSKQVFIQS 395
Query: 229 --IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286
I + CG + VF + R+ V W +++S +V +G++ AL + + +P
Sbjct: 396 ALIDMYCKCGDMASGRQVFYASTERNAVSWTALMSGYVSNGRLDQALRSIAWMQQEGFRP 455
Query: 287 NTVTIVSVLPACLKLAALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIF 335
+ VT+ +VLP C +L AL QG S+ + +L+ MY +CG + S K+F
Sbjct: 456 DVVTVATVLPVCAELRALRQGKEIHSYAVKNGFLPNVSIATSLMVMYSKCGNLDYSFKLF 515
Query: 336 VLMPHKNLVSWNVMISVY 353
M +N++SW MI Y
Sbjct: 516 DGMDARNVISWTAMIDSY 533
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/394 (20%), Positives = 176/394 (44%), Gaps = 74/394 (18%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G++ HA LI G+ + L + L++++ W +M+ +
Sbjct: 273 GLKAHALLIKNGLVDSSILRTSLIDMYFKCGKIKLARLMFEEIVERDVVVWGAMIAGFGH 332
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
E + M +G+ P+ + + E+ +++G++V+ Y++ K
Sbjct: 333 NRLQREALEYLRWMRREGICPNSVIMTTILPVIGEVGAWKLGREVHAYVVKTK------- 385
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+ + ++LID Y KC + F +++ V
Sbjct: 386 ----------------------SYSKQVFIQSALIDMYCKCGDMASGRQVFYASTERNAV 423
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW A+++GY G ++ + M+ Q +P+ ++++ VL CA+++ ++ GK IH
Sbjct: 424 SWTALMSGYVSNGRLDQALRSIAWMQ--QEGFRPDVVTVATVLPVCAELRALRQGKEIHS 481
Query: 223 YVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
Y +++ ++ ++T+ CG + S +F+ + R+V+ W ++I ++V +G + +
Sbjct: 482 YAVKNGFLPNVSIATSLMVMYSKCGNLDYSFKLFDGMDARNVISWTAMIDSYVENGCLHE 541
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALID 320
A+ + R + ++ +P++V + +L C +L L G + FV +I
Sbjct: 542 AVGVFRSMQLSKHRPDSVAMARILSICGELRVLKLGKEIHGQILKKDFESIPFVSAEIIK 601
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
MYG+ GAI K++ F +P K ++W +I YG
Sbjct: 602 MYGKFGAISKAKLAFKAIPAKGSMAWTAIIEAYG 635
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/332 (21%), Positives = 139/332 (41%), Gaps = 65/332 (19%)
Query: 2 ELGIQVHAHLI-VCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+LG +VHA+++ F+ S L++++C +WT++M
Sbjct: 372 KLGREVHAYVVKTKSYSKQVFIQSALIDMYCKCGDMASGRQVFYASTERNAVSWTALMSG 431
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G ++ + M +G RPD V C+EL+ R GK+++ Y + F N
Sbjct: 432 YVSNGRLDQALRSIAWMQQEGFRPDVVTVATVLPVCAELRALRQGKEIHSYAVKNGFLPN 491
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ L+ ++ KCG ++ + L F + +
Sbjct: 492 VSIATSLMVMYSKCGNLDYSFKL------------------------------FDGMDAR 521
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+++SW AM+ Y G E + M++ + +P++++++ +L+ C +++ +KLGK
Sbjct: 522 NVISWTAMIDSYVENGCLHEAVGVFRSMQL--SKHRPDSVAMARILSICGELRVLKLGKE 579
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IHG +L+ I + G + + F + + + W +II A+ +
Sbjct: 580 IHGQILKKDFESIPFVSAEIIKMYGKFGAISKAKLAFKAIPAKGSMAWTAIIEAYGYNDL 639
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
DA++L + PN T +VL C +
Sbjct: 640 YQDAINLFHQMQSDGFIPNHYTFKAVLSICER 671
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 107/234 (45%), Gaps = 38/234 (16%)
Query: 145 YLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGV 204
+ K H FS I++ +A G +E +LD + Q + N + S +
Sbjct: 112 HTKNPHAIFSDIQR------------FARQGKLKEALTILDYCD--QQGIPVNPTTFSSL 157
Query: 205 LAACAQVKGVKLGKAIHGYV----------LRHH-IHLSTACGFVICSCSVFNQLSTRDV 253
L AC + K + GK IH ++ LR +H+ T+CG + + VF+ +S++ V
Sbjct: 158 LRACVESKSLTHGKQIHVHIRINGLENNEFLRTKLVHMYTSCGSLEDARGVFDGVSSKSV 217
Query: 254 VVWNSIISAFVRSGQ--VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGT- 310
WN+++ V SG+ +AL ++ V+ N + ++ + A QGL
Sbjct: 218 YTWNALLRGNVISGRRHYREALSTYSEMRELGVELNVYSFSCMIKSFAGATAFRQGLKAH 277
Query: 311 ----------GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
S + +LIDMY +CG I+ +R +F + +++V W MI+ +G
Sbjct: 278 ALLIKNGLVDSSILRTSLIDMYFKCGKIKLARLMFEEIVERDVVVWGAMIAGFG 331
>gi|218190515|gb|EEC72942.1| hypothetical protein OsI_06806 [Oryza sativa Indica Group]
Length = 1030
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 94/340 (27%), Positives = 156/340 (45%), Gaps = 64/340 (18%)
Query: 44 GYYEEIVNLFYLMIDKGVR---PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G Y ++ +LF M+ GV P V C++L+ R G+ ++ Y+I E
Sbjct: 174 GLYNDVFHLFRAMLASGVDESMPTAVTVAVVLPVCAKLRVLRAGRSIHGYVIKTGLEF-- 231
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCR---YLKVSHCKFSKIK 157
D L N+L+ YAKC + +H FS I
Sbjct: 232 ----------------------------DTLSGNALVSMYAKCGGSIAMDDAHLAFSTIC 263
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK-GVKL 216
KD+VSWN+++AGY+ G EE L +M I + PN +L+ VL C+ V+ G
Sbjct: 264 CKDVVSWNSIIAGYSENGLFEEALALFGQM--ISEECLPNYSTLANVLPFCSLVEYGRHY 321
Query: 217 GKAIHGYVLRHHI------------HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
GK IHG+V+RH + H S C S+F D+V WN++I+ +V
Sbjct: 322 GKEIHGFVVRHGLEMDISVSNALMAHYSKVCEMRAVE-SIFRSSKMGDIVTWNTVIAGYV 380
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW--------- 315
+ AL L + ++ A + P++V+++S+L AC ++ L G+ +++
Sbjct: 381 MNRYPSRALKLFQGLLFAGMAPDSVSLISLLTACAQVGNLRVGIRVHGYIFRHPELLQET 440
Query: 316 ---NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
NAL+ Y +C + + F+ + +K+ VSWN ++S
Sbjct: 441 SLMNALVSFYSQCDRFDAAFRSFITIQNKDSVSWNAILSA 480
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 92/401 (22%), Positives = 171/401 (42%), Gaps = 80/401 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC------------------------NWTSM 36
+ G +H ++I G+E G+ L+ ++ +W S+
Sbjct: 214 LRAGRSIHGYVIKTGLEFDTLSGNALVSMYAKCGGSIAMDDAHLAFSTICCKDVVSWNSI 273
Query: 37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYR-VGKDVYDYMISIK 95
+ Y+ G +EE + LF MI + P++ V CS ++ R GK+++ +++
Sbjct: 274 IAGYSENGLFEEALALFGQMISEECLPNYSTLANVLPFCSLVEYGRHYGKEIHGFVVRHG 333
Query: 96 FEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSK 155
E D V+N+L+ Y+K ++ F
Sbjct: 334 LE------------------------------MDISVSNALMAHYSKVCEMRAVESIFRS 363
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
K D+V+WN ++AGY + + L ++ M P+++SL +L ACAQV ++
Sbjct: 364 SKMGDIVTWNTVIAGYVMNRYPSRALKLF--QGLLFAGMAPDSVSLISLLTACAQVGNLR 421
Query: 216 LGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAF 263
+G +HGY+ RH + + C + F + +D V WN+I+SA
Sbjct: 422 VGIRVHGYIFRHPELLQETSLMNALVSFYSQCDRFDAAFRSFITIQNKDSVSWNAILSAC 481
Query: 264 VRSGQVVDA-LDLLRDVIVANVKPNTVTIVSVLPAC----LKLAALPQGLG-----TG-S 312
S ++ LL ++ + ++VTI++++ +K+ G TG S
Sbjct: 482 ANSEHHIEQFFRLLGEMWHDVTQWDSVTILNIIRMSTFCGIKMVQESHGYSLRVGYTGDS 541
Query: 313 FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V NA++D Y +CG + + +F + +N+V+ N MIS Y
Sbjct: 542 SVANAILDAYAKCGYLHDAETLFRSLAGRNIVTGNTMISCY 582
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 142/293 (48%), Gaps = 26/293 (8%)
Query: 85 KDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKC 143
++ + Y + + + G++ V +LD + KCG + LF + ++ + N++I Y K
Sbjct: 526 QESHGYSLRVGYTGDSSVANAILDAYAKCGYLHDAETLFRSLAGRNIVTGNTMISCYLKN 585
Query: 144 RYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSG 203
++ + F+ + +KDL +WN M YA ++ L +++ + P+TIS++
Sbjct: 586 NCVEDAEMTFNHMAEKDLTTWNLMSRLYAQNDLCDQAFCLFHQLQ--SEGLNPDTISITN 643
Query: 204 VLAACAQVKGVKLGKAIHGYVLR---HHIHLSTA-------CGFVICSCSVFNQLSTRDV 253
+L+AC + V+L K HGY+LR IHL A CG + + ++F +D+
Sbjct: 644 ILSACIHLSSVQLVKQCHGYMLRASLEDIHLEGALLDAYSKCGNIANAYNLFQVSLHKDL 703
Query: 254 VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF 313
V++ ++I A+ G A++L ++ ++KP+ V + ++L AC + G+
Sbjct: 704 VIFTAMIGAYAMHGMAEKAVELFSKMLTLDIKPDHVVLTALLSACSHAGLVDAGIKIFKS 763
Query: 314 VWN------------ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ ++D+ R G +Q + + MP ++V+ N S+ G
Sbjct: 764 IREIYGVEPTEEHCACMVDLLARSGRLQDAYSFALDMP-PHVVNANAWGSLLG 815
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 140/331 (42%), Gaps = 53/331 (16%)
Query: 50 VNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDL 109
+L M+ +G+RP+ K+ S L D R G A + R L L
Sbjct: 75 TSLLRWMLARGLRPNRLALAAAVKSSSALPDCR---------------GGAALGRCLHGL 119
Query: 110 FIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLA 169
+K G + +V +++D Y + L +H F ++ D V N ++
Sbjct: 120 AVKVGYAD-----------GAVVAKAVMDMYGRIGSLADAHTVFDEMSCSDAVCRNILIT 168
Query: 170 GYALGGFREEVTNLLDEMEMIQTDMQ-PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH 228
+ G +V +L M D P ++++ VL CA+++ ++ G++IHGYV++
Sbjct: 169 ASSRAGLYNDVFHLFRAMLASGVDESMPTAVTVAVVLPVCAKLRVLRAGRSIHGYVIKTG 228
Query: 229 IHLSTACG------FVICSCSV--------FNQLSTRDVVVWNSIISAFVRSGQVVDALD 274
+ T G + C S+ F+ + +DVV WNSII+ + +G +AL
Sbjct: 229 LEFDTLSGNALVSMYAKCGGSIAMDDAHLAFSTICCKDVVSWNSIIAGYSENGLFEEALA 288
Query: 275 LLRDVIVANVKPNTVTIVSVLPACLKLA------------ALPQGLGTGSFVWNALIDMY 322
L +I PN T+ +VLP C + + GL V NAL+ Y
Sbjct: 289 LFGQMISEECLPNYSTLANVLPFCSLVEYGRHYGKEIHGFVVRHGLEMDISVSNALMAHY 348
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ ++ IF ++V+WN +I+ Y
Sbjct: 349 SKVCEMRAVESIFRSSKMGDIVTWNTVIAGY 379
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 86/387 (22%), Positives = 166/387 (42%), Gaps = 86/387 (22%)
Query: 21 FLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD 80
F S++ ++ W +++ Y + Y + LF ++ G+ PD + AC+++ +
Sbjct: 361 FRSSKMGDIV-TWNTVIAGYVMNRYPSRALKLFQGLLFAGMAPDSVSLISLLTACAQVGN 419
Query: 81 YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFY 140
RVG V+ Y+ + P E+ Q+ + N+L+ FY
Sbjct: 420 LRVGIRVHGYIF----------RHP-------------------ELLQETSLMNALVSFY 450
Query: 141 AKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFR-EEVTNLLDEMEMIQTDMQPNTI 199
++C + F I+ KD VSWNA+L+ A E+ LL EM T Q +++
Sbjct: 451 SQCDRFDAAFRSFITIQNKDSVSWNAILSACANSEHHIEQFFRLLGEMWHDVT--QWDSV 508
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQL 248
++ ++ + G+K+ + HGY LR + CG++ + ++F L
Sbjct: 509 TILNIIRM-STFCGIKMVQESHGYSLRVGYTGDSSVANAILDAYAKCGYLHDAETLFRSL 567
Query: 249 STRDVVVWNSIISAFVRSGQVVDA--------------LDLLRDVIVAN----------- 283
+ R++V N++IS ++++ V DA +L+ + N
Sbjct: 568 AGRNIVTGNTMISCYLKNNCVEDAEMTFNHMAEKDLTTWNLMSRLYAQNDLCDQAFCLFH 627
Query: 284 ------VKPNTVTIVSVLPACLKLAALP----------QGLGTGSFVWNALIDMYGRCGA 327
+ P+T++I ++L AC+ L+++ + + AL+D Y +CG
Sbjct: 628 QLQSEGLNPDTISITNILSACIHLSSVQLVKQCHGYMLRASLEDIHLEGALLDAYSKCGN 687
Query: 328 IQKSRKIFVLMPHKNLVSWNVMISVYG 354
I + +F + HK+LV + MI Y
Sbjct: 688 IANAYNLFQVSLHKDLVIFTAMIGAYA 714
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 105/230 (45%), Gaps = 42/230 (18%)
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK----GVK 215
D + +A+L A+GG T+LL M+ ++PN ++L+ + + + + G
Sbjct: 54 DRMRCSALLRERAVGGDHYGCTSLL--RWMLARGLRPNRLALAAAVKSSSALPDCRGGAA 111
Query: 216 LGKAIHGYVLRHHIHLSTACGFVICSC---------------SVFNQLSTRDVVVWNSII 260
LG+ +HG ++ + A G V+ +VF+++S D V N +I
Sbjct: 112 LGRCLHGLAVK----VGYADGAVVAKAVMDMYGRIGSLADAHTVFDEMSCSDAVCRNILI 167
Query: 261 SAFVRSGQVVDALDLLRDVIVANVK---PNTVTIVSVLPACLKLAALPQGLGTGSFV--- 314
+A R+G D L R ++ + V P VT+ VLP C KL L G +V
Sbjct: 168 TASSRAGLYNDVFHLFRAMLASGVDESMPTAVTVAVVLPVCAKLRVLRAGRSIHGYVIKT 227
Query: 315 --------WNALIDMYGRCG---AIQKSRKIFVLMPHKNLVSWNVMISVY 353
NAL+ MY +CG A+ + F + K++VSWN +I+ Y
Sbjct: 228 GLEFDTLSGNALVSMYAKCGGSIAMDDAHLAFSTICCKDVVSWNSIIAGY 277
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 37/193 (19%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W M +Y ++ LF+ + +G+ PD + AC L ++ K + YM
Sbjct: 605 TWNLMSRLYAQNDLCDQAFCLFHQLQSEGLNPDTISITNILSACIHLSSVQLVKQCHGYM 664
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ E + ++ LLD + KCG + LF+ VS
Sbjct: 665 LRASLE-DIHLEGALLDAYSKCGNIANAYNLFQ-----------------------VS-- 698
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
KDLV + AM+ YA+ G E+ L +M+ D++P+ + L+ +L+AC+
Sbjct: 699 -----LHKDLVIFTAMIGAYAMHGMAEKAVELFS--KMLTLDIKPDHVVLTALLSACSHA 751
Query: 212 ----KGVKLGKAI 220
G+K+ K+I
Sbjct: 752 GLVDAGIKIFKSI 764
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 9/117 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD--- 89
+T+M+G Y + G E+ V LF M+ ++PDH V + ACS G ++
Sbjct: 706 FTAMIGAYAMHGMAEKAVELFSKMLTLDIKPDHVVLTALLSACSHAGLVDAGIKIFKSIR 765
Query: 90 --YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCR 144
Y + E AC ++DL + GR++ +M + N+ C+
Sbjct: 766 EIYGVEPTEEHCAC----MVDLLARSGRLQDAYSFALDMPPHVVNANAWGSLLGACK 818
>gi|255542944|ref|XP_002512535.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548496|gb|EEF49987.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 387
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 97/345 (28%), Positives = 150/345 (43%), Gaps = 56/345 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT M+ Y + ++F M+ + P+ F V KAC +K G V+ + I
Sbjct: 28 WTVMIAGYASCNEHAYAWSMFCDMVASEMNPNAFTISSVLKACKGMKSLSCGTLVHGFAI 87
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC- 151
EG+ V+N+L+D YA C C
Sbjct: 88 KHGIEGS------------------------------IFVDNALMDAYATCCVSMREACL 117
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F I+ K+ VSW ++AGY G + +M + + + P + S++ + ACA +
Sbjct: 118 VFCGIEVKNAVSWTTLIAGYTHKGDGHLGLQIFRQMLLEEEECNPYSFSIA--VRACASI 175
Query: 212 KGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSII 260
GK IH V++H S CG + + F++++ RD++ WN+II
Sbjct: 176 GSHNFGKQIHAAVIKHGCEFSLPVMNSILDMYCRCGRLPEANQYFHEMTRRDLITWNTII 235
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLG 309
+ + RS + +AL + ++ + P+ T SV AC LA L +GL
Sbjct: 236 AGYERSDSI-EALFIFSEMKLNGFDPDCNTFTSVTAACANLAVLSCGQQVHGGIIQKGLD 294
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ NALIDMY +CG I SRKIF + KNLVSW M+ YG
Sbjct: 295 KDLILANALIDMYAKCGIITDSRKIFSELSCKNLVSWTSMMIGYG 339
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/341 (20%), Positives = 145/341 (42%), Gaps = 66/341 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLE--------------VFC--------NWTSMMG 38
+ G VH I G+E F+ + L++ VFC +WT+++
Sbjct: 76 LSCGTLVHGFAIKHGIEGSIFVDNALMDAYATCCVSMREACLVFCGIEVKNAVSWTTLIA 135
Query: 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
Y G + +F M+ + + + +AC+ + + GK ++ +I E
Sbjct: 136 GYTHKGDGHLGLQIFRQMLLEEEECNPYSFSIAVRACASIGSHNFGKQIHAAVIKHGCE- 194
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
P++ NS++D Y +C L ++ F ++ +
Sbjct: 195 ---FSLPVM--------------------------NSILDMYCRCGRLPEANQYFHEMTR 225
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+DL++WN ++AGY + + L EM P+ + + V AACA + + G+
Sbjct: 226 RDLITWNTIIAGYERS---DSIEALFIFSEMKLNGFDPDCNTFTSVTAACANLAVLSCGQ 282
Query: 219 AIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
+HG +++ I + CG + S +F++LS +++V W S++ + G
Sbjct: 283 QVHGGIIQKGLDKDLILANALIDMYAKCGIITDSRKIFSELSCKNLVSWTSMMIGYGAHG 342
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
+ ++L +++ + +KP+ + ++VL AC + QGL
Sbjct: 343 FGREVVELFDEMVESGIKPDHIAFMAVLSACSHAGLVDQGL 383
>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
Length = 787
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 94/330 (28%), Positives = 154/330 (46%), Gaps = 55/330 (16%)
Query: 48 EIVNLFYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPL 106
E + F M+D G VRPD +A +E +G+ V+ Y + + V L
Sbjct: 194 EALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGL 253
Query: 107 LDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNA 166
+ L+ KCG M+ LF+ ++ DLV++NA
Sbjct: 254 MSLYSKCGDMDSAQFLFD------------------------------RMDNPDLVAYNA 283
Query: 167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR 226
+++GY++ G E L E+ + +PN+ +L V+ + L + +H +V++
Sbjct: 284 LISGYSVNGMVESSVELFKEL--TASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVK 341
Query: 227 HHIH----LSTACGFVIC-------SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDL 275
+ +STA + C + S+F+ + + + WN++IS + ++G A+ L
Sbjct: 342 ARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVAL 401
Query: 276 LRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGR 324
+ + NV+PN +TI S L AC L AL G L +V ALIDMY +
Sbjct: 402 FQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAK 461
Query: 325 CGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
CG+I ++R IF M +KN+VSWN MIS YG
Sbjct: 462 CGSIAEARSIFDRMDNKNVVSWNAMISGYG 491
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 146/331 (44%), Gaps = 55/331 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
+ +++ Y+V G E V LF + G RP+ V S
Sbjct: 281 YNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPF-------------- 326
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
G+ + R L +K +D D LV+ +L Y + ++ +
Sbjct: 327 -----GHELLARCLHAFVVKA-----------RLDADALVSTALTTLYCRLNDMESARSI 370
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + +K + SWNAM++GYA G E L M+ + ++QPN I++S L+ACA +
Sbjct: 371 FDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQ--ELNVQPNPITISSTLSACAHLG 428
Query: 213 GVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ LGK +H YV+ I + CG + + S+F+++ ++VV WN++IS
Sbjct: 429 ALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMIS 488
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA---- 317
+ GQ +AL L +D++ A + P + T +SV+ AC + +G + N
Sbjct: 489 GYGLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRIT 548
Query: 318 --------LIDMYGRCGAIQKSRKIFVLMPH 340
++D+ GR G + ++ ++ P
Sbjct: 549 PGIEHCTCMVDLLGRAGKLNEALELISEFPQ 579
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 116/248 (46%), Gaps = 27/248 (10%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D V ++L Y K + F + D + WN +LAG E ++D
Sbjct: 148 DTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLPGSEALEAFVRMVDAGR 207
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTA-------CGF 237
++P++ +L+ L A A+ + +G+ +HGY ++ H H+ T CG
Sbjct: 208 -----VRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGD 262
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ + +F+++ D+V +N++IS + +G V +++L +++ + +PN+ T+V+V+P
Sbjct: 263 MDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPV 322
Query: 298 -----------CLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
CL + L + V AL +Y R ++ +R IF M K + SW
Sbjct: 323 YSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESW 382
Query: 347 NVMISVYG 354
N MIS Y
Sbjct: 383 NAMISGYA 390
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 105/255 (41%), Gaps = 51/255 (20%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G E V LF LM + V+P+ AC+ L +GK V+ +
Sbjct: 381 SWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRII 440
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
K E N V L+D++ KCG + +F+ MD
Sbjct: 441 SKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMD------------------------ 476
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
K++VSWNAM++GY L G E L +M+ + P + + V+ AC+
Sbjct: 477 ------NKNVVSWNAMISGYGLHGQGAEALKLYK--DMLDARILPTSSTFLSVIYACSHG 528
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V G+ + V+ + ++ G C+C ++ R+G++ +
Sbjct: 529 GLVDEGQKVF-RVMTNEYRITP--GIEHCTC----------------MVDLLGRAGKLNE 569
Query: 272 ALDLLRDVIVANVKP 286
AL+L+ + + + P
Sbjct: 570 ALELISEFPQSAIGP 584
>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
Length = 1027
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 166/392 (42%), Gaps = 71/392 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD-YRVGKDVYDY 90
+W +MM +G Y E + F M D G++P FV + AC +R G V+ +
Sbjct: 140 SWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGF 199
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM------------------------ 126
+ + V +L L+ G + + +FEEM
Sbjct: 200 VAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEV 259
Query: 127 ----------------------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
+ V NSLI + ++ F ++ ++D +SW
Sbjct: 260 IDIYKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISW 319
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
N++ A YA G EE + M ++ N+ ++S +L+ V K G+ IHG V
Sbjct: 320 NSIAAAYAQNGHIEESFRIFSLMRRFHDEV--NSTTVSTLLSVLGHVDHQKWGRGIHGLV 377
Query: 225 LRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
++ + + G + + VF Q+ T+D++ WNS++++FV G+ +DAL
Sbjct: 378 VKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDAL 437
Query: 274 DLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQGLGTGSFVWNALIDMY 322
LL +I + N VT S L AC L + GL + NAL+ MY
Sbjct: 438 GLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMY 497
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G+ G + +SR++ + MP +++V+WN +I Y
Sbjct: 498 GKIGEMSESRRVLLQMPRRDVVAWNALIGGYA 529
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 142/344 (41%), Gaps = 55/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S+ Y G+ EE +F LM + + + + G+ ++ +
Sbjct: 318 SWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLV 377
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + F+ CV LL ++ GR V +L+
Sbjct: 378 VKMGFDSVVCVCNTLLRMYAGAGRS---------------VEANLV-------------- 408
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ KDL+SWN+++A + G + LL MI + N ++ + LAAC
Sbjct: 409 -FKQMPTKDLISWNSLMASFVNDGRSLDALGLL--CSMISSGKSVNYVTFTSALAACFTP 465
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSC-----------SVFNQLSTRDVVVWNSII 260
+ G+ +HG V+ + + G + S V Q+ RDVV WN++I
Sbjct: 466 DFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALI 525
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GL 308
+ AL + + V V N +T+VSVL ACL L + G
Sbjct: 526 GGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGF 585
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+ V N+LI MY +CG + S+ +F + ++N+++WN M++
Sbjct: 586 ESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAA 629
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 133/274 (48%), Gaps = 37/274 (13%)
Query: 110 FIKCGR----MEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWN 165
F + GR + + SGLF ++ N+L+ Y K + S ++ ++D+V+WN
Sbjct: 467 FFEKGRILHGLVVVSGLFYNQ----IIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWN 522
Query: 166 AMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNTISLSGVLAACAQVKG--VKLGKAIHG 222
A++ GYA E+ L + ++ + + N I++ VL+AC + G ++ GK +H
Sbjct: 523 ALIGGYAED---EDPDKALAAFQTMRVEGVSSNYITVVSVLSACL-LPGDLLERGKPLHA 578
Query: 223 YVLR------HHIHLS-----TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
Y++ H+ S CG + S +FN L R+++ WN++++A G +
Sbjct: 579 YIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEE 638
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LG--TGSFVWNALID 320
L L+ + V + + L A KLA L +G LG SF++NA D
Sbjct: 639 VLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAAD 698
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
MY +CG I + K+ +++L SWN++IS G
Sbjct: 699 MYSKCGEIGEVVKMLPPSVNRSLPSWNILISALG 732
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 140/344 (40%), Gaps = 57/344 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY-RVGKDVYDYM 91
W +++G Y ++ + F M +GV ++ V AC D GK ++ Y+
Sbjct: 521 WNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYI 580
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+S FE + VK NSLI YAKC L S
Sbjct: 581 VSAGFESDEHVK------------------------------NSLITMYAKCGDLSSSQD 610
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ + +++++WNAMLA A G EEV L+ +M + + S S L+A A++
Sbjct: 611 LFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSL--DQFSFSEGLSAAAKL 668
Query: 212 KGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ G+ +HG ++ + + CG + + R + WN +I
Sbjct: 669 AVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILI 728
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA--- 317
SA R G + +++ +KP VT VS+L AC + +GL +
Sbjct: 729 SALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGL 788
Query: 318 ---------LIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMIS 351
+ID+ GR G + ++ MP K N + W +++
Sbjct: 789 EPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLA 832
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 106/236 (44%), Gaps = 28/236 (11%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
L N+LI+ Y K +K + F + ++ VSWN M++G G E +M
Sbjct: 108 LHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFF--RKMC 165
Query: 191 QTDMQPNTISLSGVLAACAQVKGV-KLGKAIHGYVLRHHI-----------HLSTACGFV 238
++P++ ++ ++ AC + + + G +HG+V + + HL G V
Sbjct: 166 DLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLV 225
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
CS VF ++ R+VV W S++ + G+ + +D+ +D + ++
Sbjct: 226 SCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKDESLGR---------QIIGQV 276
Query: 299 LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+K GL + V N+LI M G G + + IF M ++ +SWN + + Y
Sbjct: 277 VK-----SGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYA 327
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 15/168 (8%)
Query: 198 TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWN 257
TI +G VKG+ +H L I++ T G V + +F+ + R+ V WN
Sbjct: 86 TIETTGRAVHALCVKGLVRLSVLHTNTL---INMYTKFGRVKPARHLFDIMPVRNEVSWN 142
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL------------P 305
+++S VR G ++ ++ R + +KP++ I S++ AC + ++
Sbjct: 143 TMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAK 202
Query: 306 QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
GL + +V A++ +YG G + SRK+F MP +N+VSW ++ Y
Sbjct: 203 SGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGY 250
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/329 (19%), Positives = 122/329 (37%), Gaps = 77/329 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G +HA+++ G E + + L+ ++ W +M+
Sbjct: 570 LERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAA 629
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
G+ EE++ L M GV D F + A ++L G+ ++ + + FE +
Sbjct: 630 NAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHD 689
Query: 100 ACVKRPLLDLFIKCGRM-EITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
+ + D++ KCG + E+ L ++
Sbjct: 690 SFIFNAAADMYSKCGEIGEVVKMLPPSVN------------------------------- 718
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+ L SWN +++ G+ EEV EM++ ++P ++ +L AC+ V G
Sbjct: 719 RSLPSWNILISALGRHGYFEEVCATFH--EMLEMGIKPGHVTFVSLLTACSHGGLVDKGL 776
Query: 219 AIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRD 278
A + + R L A IC +I RSG++ +A +
Sbjct: 777 AYYDMIAR-DFGLEPAIEHCIC------------------VIDLLGRSGRLAEAETFISK 817
Query: 279 VIVANVKPNTVTIVSVLPACLKLAALPQG 307
+ +KPN + S+L +C L +G
Sbjct: 818 M---PMKPNDLVWRSLLASCKIHGNLDRG 843
>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Vitis vinifera]
Length = 1053
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 127/244 (52%), Gaps = 24/244 (9%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
+ LI Y KCR L + ++ ++++VSW AM++GY+ G+ E +L +EM+
Sbjct: 514 LRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLF--VEMLM 571
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTA-------CGFVIC 240
+ PN + + VL +C G +LG+ IH V++ HI + ++ G +
Sbjct: 572 SGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICE 631
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ VF+ L RDVV +IIS + + G +ALDL R + ++ N VT SVL A
Sbjct: 632 ARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSG 691
Query: 301 LAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
LAAL G S V N+LIDMY +CG++ SR+IF MP + ++SWN M
Sbjct: 692 LAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAM 751
Query: 350 ISVY 353
+ Y
Sbjct: 752 LVGY 755
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/382 (23%), Positives = 172/382 (45%), Gaps = 78/382 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNV 42
G +VHAH+I E +L ++L+ ++ +WT+M+ Y+
Sbjct: 496 GQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQ 555
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
GY E ++LF M+ G P+ F V +C+ +++G+ ++ +I FE + V
Sbjct: 556 RGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFV 615
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
LLD++ K G++ C +V F + ++D+V
Sbjct: 616 GSSLLDMYAKAGKI--------------------------CEARRV----FDGLPERDVV 645
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
S A+++GYA G EE +L ++ + M+ N ++ + VL A + + + G+ +H
Sbjct: 646 SCTAIISGYAQLGLDEEALDLFRRLQ--REGMRSNYVTYASVLTALSGLAALDHGRQVHS 703
Query: 223 YVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+VLR I + + CG + S +F+ + R V+ WN+++ + + G +
Sbjct: 704 HVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGRE 763
Query: 272 ALDLLRDVIVAN-VKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA------------- 317
A++L + + N VKP++VT ++VL C +GL + N
Sbjct: 764 AVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGC 823
Query: 318 LIDMYGRCGAIQKSRKIFVLMP 339
++D++GR G ++++ + MP
Sbjct: 824 VVDLFGRAGRVEEAFEFIKKMP 845
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/342 (21%), Positives = 143/342 (41%), Gaps = 77/342 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNW---------------------TSMMGM 39
+LG Q+H+ +I E F+GS LL+++ T+++
Sbjct: 594 FQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISG 653
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y LG EE ++LF + +G+R ++ V A S L G+ V+ +++ K
Sbjct: 654 YAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAK---- 709
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
L ++ ++ NSLID Y+KC L S F + ++
Sbjct: 710 -------LPFYV-------------------VLQNSLIDMYSKCGSLTYSRRIFDSMPER 743
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
++SWNAML GY+ G E L M+ + ++P++++ VL+ C+ G
Sbjct: 744 TVISWNAMLVGYSKHGLGREAVELFKLMKE-ENKVKPDSVTFLAVLSGCSHG-----GME 797
Query: 220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
G + + + ++ GF ++ + ++ F R+G+V +A + ++ +
Sbjct: 798 DRGLEIFYEM-VNQKDGF------------EPEIEHYGCVVDLFGRAGRVEEAFEFIKKM 844
Query: 280 IVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDM 321
+P S+L AC + Q + G FV L+++
Sbjct: 845 ---PFEPTAAIWGSLLGAC----RVHQNVHIGEFVARRLLEI 879
>gi|242074230|ref|XP_002447051.1| hypothetical protein SORBIDRAFT_06g027570 [Sorghum bicolor]
gi|241938234|gb|EES11379.1| hypothetical protein SORBIDRAFT_06g027570 [Sorghum bicolor]
Length = 818
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 164/347 (47%), Gaps = 56/347 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNL-FYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M+ Y G + E ++L LM K V D A S+ +D R+G+ ++ Y+
Sbjct: 312 WNTMITGYVQNGKFAEAMDLVIRLMGSKEVPLDVVTFLSALTAASQSQDGRLGQQLHGYL 371
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I G + ++ N+L+ Y++C ++ +
Sbjct: 372 IK---------------------------GTHATLP--VILGNALVVMYSRCGNVQTAFK 402
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +KD+VSWN M+ + F ++ LL +M ++ ++++L+ VL+A +
Sbjct: 403 LFDRLPEKDIVSWNTMVTAFVQNDF--DLEGLLLVYQMQKSCFAADSVTLTAVLSAASNT 460
Query: 212 KGVKLGKAIHGYVLRHHIH----------LSTACGFVICSCSVFNQLST--RDVVVWNSI 259
+++GK HGY++R I + G + + VF+ RD V WN++
Sbjct: 461 GDLQIGKQAHGYLVRRGIEDEGLESYLIDMYAKSGRIEIAQRVFDDYGNVKRDEVTWNAM 520
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA------------ALPQG 307
I+ + +SGQ A+ R ++ A+++P +VT+ SVLPAC L AL +
Sbjct: 521 IAGYTQSGQPEQAILTFRAMLQASLEPTSVTLASVLPACDPLGGGLCAGKQIHCFALRRC 580
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L T FV AL+DMY +CG I + +F +M K+ VS+ MIS G
Sbjct: 581 LDTNVFVGTALVDMYSKCGEISTAEHVFAVMIEKSTVSYTTMISGLG 627
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/342 (24%), Positives = 148/342 (43%), Gaps = 77/342 (22%)
Query: 53 FYLMIDKGVRP----DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLD 108
Y +++ RP DH+ AC+ + R+GK V+ +++ R L D
Sbjct: 117 LYALLNHAARPAPRSDHYTYSCALTACARTRRLRLGKSVHAHLLR--------RARSLPD 168
Query: 109 LFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKC-RY-----LKVSHCKFSKIKQKDLV 162
+ + NSL++ YA C RY + V F + +++ V
Sbjct: 169 TAV--------------------LRNSLLNLYASCMRYRGDGGVDVVRRLFDVMPKRNAV 208
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG--------- 213
SWN + Y G +E L M++ ++P +S V A A+
Sbjct: 209 SWNTLFGWYVKTGRPQEALELF--ARMLEDGIKPTPVSFVNVFPAVAKEDPSWSFVLYGL 266
Query: 214 -VKLGKAIHG--YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
VK G+ +V+ I + + G + + VF + ++ VWN++I+ +V++G+
Sbjct: 267 LVKHGREYVNDLFVVSSAIAMFSELGDLQSAWRVFEYTAKKNTEVWNTMITGYVQNGKFA 326
Query: 271 DALDLLRDVIVANVKP-NTVTIVSVLPACLKL------------------AALPQGLGTG 311
+A+DL+ ++ + P + VT +S L A + A LP LG
Sbjct: 327 EAMDLVIRLMGSKEVPLDVVTFLSALTAASQSQDGRLGQQLHGYLIKGTHATLPVILG-- 384
Query: 312 SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
NAL+ MY RCG +Q + K+F +P K++VSWN M++ +
Sbjct: 385 ----NALVVMYSRCGNVQTAFKLFDRLPEKDIVSWNTMVTAF 422
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 93/406 (22%), Positives = 172/406 (42%), Gaps = 83/406 (20%)
Query: 1 MELGIQVHAHLIVCGVEL--CAFLGSQLLEVFCN-------------------------- 32
+ LG VHAHL+ L A L + LL ++ +
Sbjct: 149 LRLGKSVHAHLLRRARSLPDTAVLRNSLLNLYASCMRYRGDGGVDVVRRLFDVMPKRNAV 208
Query: 33 -WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W ++ G Y G +E + LF M++ G++P V+ A V K+ +
Sbjct: 209 SWNTLFGWYVKTGRPQEALELFARMLEDGIKPTPVSFVNVFPA--------VAKEDPSWS 260
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
L L +K GR E D V +S I +++ L+ +
Sbjct: 261 FV------------LYGLLVKHGR---------EYVNDLFVVSSAIAMFSELGDLQSAWR 299
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +K+ WN M+ GY G E +L+ + M ++ + ++ L A +Q
Sbjct: 300 VFEYTAKKNTEVWNTMITGYVQNGKFAEAMDLVIRL-MGSKEVPLDVVTFLSALTAASQS 358
Query: 212 KGVKLGKAIHGYVLR-HHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSI 259
+ +LG+ +HGY+++ H L + CG V + +F++L +D+V WN++
Sbjct: 359 QDGRLGQQLHGYLIKGTHATLPVILGNALVVMYSRCGNVQTAFKLFDRLPEKDIVSWNTM 418
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------ 313
++AFV++ ++ L L+ + + ++VT+ +VL A L G +
Sbjct: 419 VTAFVQNDFDLEGLLLVYQMQKSCFAADSVTLTAVLSAASNTGDLQIGKQAHGYLVRRGI 478
Query: 314 ----VWNALIDMYGRCGAIQKSRKIFVLMPH--KNLVSWNVMISVY 353
+ + LIDMY + G I+ ++++F + ++ V+WN MI+ Y
Sbjct: 479 EDEGLESYLIDMYAKSGRIEIAQRVFDDYGNVKRDEVTWNAMIAGY 524
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 129/290 (44%), Gaps = 43/290 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ + + E + L Y M D V A S D ++GK + Y+
Sbjct: 414 SWNTMVTAFVQNDFDLEGLLLVYQMQKSCFAADSVTLTAVLSAASNTGDLQIGKQAHGYL 473
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ E + ++ L+D++ K GR+EI +F++
Sbjct: 474 VRRGIE-DEGLESYLIDMYAKSGRIEIAQRVFDD-------------------------- 506
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+ +K +D V+WNAM+AGY G E+ +L M+Q ++P +++L+ VL AC +
Sbjct: 507 -YGNVK-RDEVTWNAMIAGYTQSGQPEQA--ILTFRAMLQASLEPTSVTLASVLPACDPL 562
Query: 212 KG-VKLGKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
G + GK IH + LR ++ + TA CG + + VF + + V + ++
Sbjct: 563 GGGLCAGKQIHCFALRRCLDTNVFVGTALVDMYSKCGEISTAEHVFAVMIEKSTVSYTTM 622
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG 309
IS + G AL L + +KP+ VT ++ + AC + +GL
Sbjct: 623 ISGLGQHGFGERALSLFYYMQEKGLKPDGVTFLAAISACNYSGLVDEGLA 672
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 98/222 (44%), Gaps = 32/222 (14%)
Query: 164 WNAMLAGYALGGFREEVTNLLDEM-EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+NA+L Y E L + + + + + S L ACA+ + ++LGK++H
Sbjct: 98 YNALLIAYVARSLPEHALRLYALLNHAARPAPRSDHYTYSCALTACARTRRLRLGKSVHA 157
Query: 223 YVLRHH-------------IHLSTAC------GFVICSCSVFNQLSTRDVVVWNSIISAF 263
++LR ++L +C G V +F+ + R+ V WN++ +
Sbjct: 158 HLLRRARSLPDTAVLRNSLLNLYASCMRYRGDGGVDVVRRLFDVMPKRNAVSWNTLFGWY 217
Query: 264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK------------LAALPQGLGTG 311
V++G+ +AL+L ++ +KP V+ V+V PA K L +
Sbjct: 218 VKTGRPQEALELFARMLEDGIKPTPVSFVNVFPAVAKEDPSWSFVLYGLLVKHGREYVND 277
Query: 312 SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
FV ++ I M+ G +Q + ++F KN WN MI+ Y
Sbjct: 278 LFVVSSAIAMFSELGDLQSAWRVFEYTAKKNTEVWNTMITGY 319
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/230 (20%), Positives = 89/230 (38%), Gaps = 53/230 (23%)
Query: 1 MELGIQVHAHLIVCGVE---LCAFL------------GSQLLEVFCN-------WTSMMG 38
+++G Q H +L+ G+E L ++L ++ + + N W +M+
Sbjct: 463 LQIGKQAHGYLVRRGIEDEGLESYLIDMYAKSGRIEIAQRVFDDYGNVKRDEVTWNAMIA 522
Query: 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
Y G E+ + F M+ + P V AC L G
Sbjct: 523 GYTQSGQPEQAILTFRAMLQASLEPTSVTLASVLPACDPLG------------------G 564
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
C + I C L +D + V +L+D Y+KC + + F+ + +
Sbjct: 565 GLCAGKQ-----IHC------FALRRCLDTNVFVGTALVDMYSKCGEISTAEHVFAVMIE 613
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
K VS+ M++G GF E +L M+ + ++P+ ++ ++AC
Sbjct: 614 KSTVSYTTMISGLGQHGFGERALSLFYYMQ--EKGLKPDGVTFLAAISAC 661
>gi|334186228|ref|NP_191896.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332646951|gb|AEE80472.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 884
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 156/346 (45%), Gaps = 56/346 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+G Y G + L++ M +GV P + KAC++L+D R G +++ ++
Sbjct: 150 WNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLV 209
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ + F+VN +L+ YAK L +
Sbjct: 210 KLGYHSTG-----------------------------FIVN-ALVSMYAKNDDLSAARRL 239
Query: 153 FSKIKQK-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++K D V WN++L+ Y+ G E L EM M T PN+ ++ L AC
Sbjct: 240 FDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHM--TGPAPNSYTIVSALTACDGF 297
Query: 212 KGVKLGKAIHGYVLRHHIHLS------------TACGFVICSCSVFNQLSTRDVVVWNSI 259
KLGK IH VL+ H S T CG + + + Q++ DVV WNS+
Sbjct: 298 SYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSL 357
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----W 315
I +V++ +AL+ D+I A K + V++ S++ A +L+ L G+ ++V W
Sbjct: 358 IKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGW 417
Query: 316 -------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
N LIDMY +C + F+ M K+L+SW +I+ Y
Sbjct: 418 DSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYA 463
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/341 (20%), Positives = 147/341 (43%), Gaps = 54/341 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ Y+ G E + LF M G P+ + AC ++GK+++ ++
Sbjct: 252 WNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVL 311
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ + V N+LI Y +C + +
Sbjct: 312 KSSTHSS-----------------------------ELYVCNALIAMYTRCGKMPQAERI 342
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
++ D+V+WN+++ GY +E +MI + + +S++ ++AA ++
Sbjct: 343 LRQMNNADVVTWNSLIKGYVQNLMYKEALEFFS--DMIAAGHKSDEVSMTSIIAASGRLS 400
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ G +H YV++H I + + C F ++ +D++ W ++I+
Sbjct: 401 NLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIA 460
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLGT 310
+ ++ V+AL+L RDV ++ + + + S+L A L + L +GL
Sbjct: 461 GYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL-L 519
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ + N L+D+YG+C + + ++F + K++VSW MIS
Sbjct: 520 DTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMIS 560
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 121/258 (46%), Gaps = 33/258 (12%)
Query: 123 FEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTN 182
F + DFL L+ Y KC L + F ++ + +WN M+ Y G E +
Sbjct: 110 FPSFELDFLAGK-LVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNG--EPASA 166
Query: 183 LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVI--- 239
L M + S +L ACA+++ ++ G +H +++ H + GF++
Sbjct: 167 LALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYH---STGFIVNAL 223
Query: 240 -----------CSCSVFNQLSTR-DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
+ +F+ + D V+WNSI+S++ SG+ ++ L+L R++ + PN
Sbjct: 224 VSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPN 283
Query: 288 TVTIVSVLPAC--LKLAALPQGL----------GTGSFVWNALIDMYGRCGAIQKSRKIF 335
+ TIVS L AC A L + + + +V NALI MY RCG + ++ +I
Sbjct: 284 SYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERIL 343
Query: 336 VLMPHKNLVSWNVMISVY 353
M + ++V+WN +I Y
Sbjct: 344 RQMNNADVVTWNSLIKGY 361
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 150/344 (43%), Gaps = 53/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W S++ Y Y+E + F MI G + D + A L + G +++ Y+
Sbjct: 353 TWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYV 412
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I ++ N V L+D++ KC L M + FL
Sbjct: 413 IKHGWDSNLQVGNTLIDMYSKC-------NLTCYMGRAFL-------------------- 445
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
++ KDL+SW ++AGYA E L ++ + M+ + + L +L A + +
Sbjct: 446 ---RMHDKDLISWTTVIAGYAQNDCHVEALELF--RDVAKKRMEIDEMILGSILRASSVL 500
Query: 212 KGVKLGKAIHGYVLRHH----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
K + + K IH ++LR + + C + + VF + +DVV W S+IS
Sbjct: 501 KSMLIVKEIHCHILRKGLLDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMIS 560
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN----- 316
+ +G +A++L R ++ + ++V ++ +L A L+AL +G ++
Sbjct: 561 SSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCL 620
Query: 317 ------ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
A++DMY CG +Q ++ +F + K L+ + MI+ YG
Sbjct: 621 EGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYG 664
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/338 (23%), Positives = 158/338 (46%), Gaps = 65/338 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF--CNWTSMMG-----MYN---------VLGYYE 47
G+++HA++I G + +G+ L++++ CN T MG M++ + GY +
Sbjct: 405 GMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQ 464
Query: 48 -----EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
E + LF + K + D + + +A S LK + K+++ +++
Sbjct: 465 NDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHIL---------- 514
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
++ LLD I+ N L+D Y KCR + + F IK KD+V
Sbjct: 515 RKGLLDTVIQ---------------------NELVDVYGKCRNMGYATRVFESIKGKDVV 553
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW +M++ AL G E L M++T + ++++L +L+A A + + G+ IH
Sbjct: 554 SWTSMISSSALNGNESEAVELF--RRMVETGLSADSVALLCILSAAASLSALNKGREIHC 611
Query: 223 YVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
Y+LR + + CG + + +VF+++ + ++ + S+I+A+ G
Sbjct: 612 YLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKA 671
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG 309
A++L + NV P+ ++ +++L AC L +G G
Sbjct: 672 AVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRG 709
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 24/174 (13%)
Query: 204 VLAACAQVKGVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTR 251
VL C + + V G+ +H + + + + CG + + VF+++ R
Sbjct: 86 VLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDR 145
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---- 307
WN++I A+V +G+ AL L ++ V V + ++L AC KL + G
Sbjct: 146 TAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELH 205
Query: 308 -----LGTGS--FVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISVY 353
LG S F+ NAL+ MY + + +R++F K + V WN ++S Y
Sbjct: 206 SLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSY 259
>gi|297738048|emb|CBI27249.3| unnamed protein product [Vitis vinifera]
Length = 707
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 164/344 (47%), Gaps = 55/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRP-DHFVCPKVYKACSELKDYRVGKDVYDY 90
+W M+ Y + Y EIV + + K + D+ V V KACSEL++ G+ ++
Sbjct: 151 SWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKLH-- 208
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
C +++ S D V L+D YAKCR ++ S
Sbjct: 209 ----------------------CQIVKVGS-------PDSFVLTGLVDMYAKCREVEDSR 239
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F +I +++V W +M+ GY +E L + M + ++ N +L ++ AC +
Sbjct: 240 RVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMR--EGLVEGNQYTLGSLVTACTK 297
Query: 211 VKGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSI 259
+ + GK +HGYV++ L++ CG + + SVF++LST D+V W ++
Sbjct: 298 LGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAM 357
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LGT 310
I + + G +AL L D ++ PNTVT SVL AC + +L G LG+
Sbjct: 358 IVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGS 417
Query: 311 GSFVW-NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ NAL+DMY +C I +R +F + K++++WN +IS Y
Sbjct: 418 EDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGY 461
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 132/285 (46%), Gaps = 42/285 (14%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WTSM+ Y +E + LF M + V + + + AC++L GK V+ Y+I
Sbjct: 253 WTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVI 312
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F+ N+ + PLLDL Y KC ++ +
Sbjct: 313 KSGFDLNSFLVTPLLDL------------------------------YFKCGDIRDAFSV 342
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ DLVSW AM+ GYA G+ E L + D+ PNT++ S VL+ACAQ
Sbjct: 343 FDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERW--KDLLPNTVTTSSVLSACAQTG 400
Query: 213 GVKLGKAIH--GYVLRHH--------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISA 262
+ +G+++H G L + + C + + VF + +DV+ WNSIIS
Sbjct: 401 SLNMGRSVHCLGIKLGSEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISG 460
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
+ ++G +AL+L + +V P+ +T+VSVL AC + A G
Sbjct: 461 YTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVG 505
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/375 (23%), Positives = 152/375 (40%), Gaps = 100/375 (26%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNV 42
G VH ++I G +L +FL + LL+++ +WT+M+ Y
Sbjct: 304 GKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQ 363
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
GY E + LF K + P+ V AC++ +G+ V+ C
Sbjct: 364 RGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVH------------C- 410
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L IK G +D N+L+D YAKC + + F + KD++
Sbjct: 411 ------LGIKLG------------SEDATFENALVDMYAKCHMIGDARYVFETVFDKDVI 452
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+WN++++GY G+ E L D+M + P+ I+L VL+ACA V ++G ++HG
Sbjct: 453 AWNSIISGYTQNGYAYEALELFDQMR--SDSVYPDAITLVSVLSACASVGAYRVGSSLHG 510
Query: 223 YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
Y ++ + LS RD +L+L D++
Sbjct: 511 YAIKAGL------------------LSGRD----------------CSRSLELFGDMLKE 536
Query: 283 NVKPNTVTIVSVLPACLKLAALPQG---LGTGSFVWN---------ALIDMYGRCGAIQK 330
++PN V ++L AC L +G T V+N ++D+ R G +++
Sbjct: 537 KLEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQVYNFVPSMKHYACMVDLLARAGRLEE 596
Query: 331 SRKIFVLMPHKNLVS 345
+ +P + VS
Sbjct: 597 ALDFIEKIPIQPDVS 611
>gi|347954480|gb|AEP33740.1| chlororespiratory reduction 21, partial [Matthiola maderensis]
Length = 807
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 163/345 (47%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++G+ +G E + F M++ G+ PD+FV P V KAC L+ R G+ V+ Y+
Sbjct: 116 SWAAIIGVKCRIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYV 175
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
V L D++ KCG ++ +F+
Sbjct: 176 AKAGLHHCVFVASSLADMYGKCGVLDDARKVFD--------------------------- 208
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
I ++ V+WNA++ GY G EE LL EM + ++P +++S L+A A +
Sbjct: 209 ---YIPDRNAVAWNALMVGYVQNGMYEEAIRLLSEMR--KEGIEPTRVTVSTCLSASANM 263
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICS--CSV---------FNQLSTRDVVVWNSII 260
G++ GK H + + + L G I + C V F+ + +DVV WN +I
Sbjct: 264 GGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVVTWNLLI 323
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----LKLAA------LPQGLG 309
S +V+ G V +A+ + + + N+K + VT+ +++ A LKL + GL
Sbjct: 324 SGYVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLE 383
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + + +DMY +CG+I ++K+F K+L+ WN ++S Y
Sbjct: 384 SDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYA 428
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/426 (21%), Positives = 179/426 (42%), Gaps = 87/426 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q HA IV G+EL LG+ +L +C W ++
Sbjct: 266 IEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVVTWNLLISG 325
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G EE + + LM + ++ D + A + ++ ++GK++ Y I E +
Sbjct: 326 YVQQGLVEEAIYMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLESD 385
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEE-MDQDFLVNNSLIDFYAKC--------------- 143
+ +D++ KCG + +F+ + +D ++ N+L+ YA
Sbjct: 386 IVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYEMQL 445
Query: 144 ------------------RYLKVSHCK--FSKIKQK----DLVSWNAMLAGYALGGFREE 179
R +V+ K F +++ +L+SW M+ G G EE
Sbjct: 446 ESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGIFPNLISWTTMMNGLVQNGCSEE 505
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----------- 228
L +M+ ++ ++PN +++ L+AC + + G++IHGY++R+
Sbjct: 506 AILFLRKMQ--ESGLRPNAFTITVALSACVNLASLHFGRSIHGYIIRNQQYSFSASIETS 563
Query: 229 -IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
+ + CG + + VF ++ ++N++ISA+ G+V +A+ L R + VKP+
Sbjct: 564 LVDMYAKCGDINKAERVFGSKLCSELPLYNAMISAYALYGKVREAITLYRSLEDGGVKPD 623
Query: 288 TVTIVSVLPAC------------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIF 335
+TI S+L AC + G+ + ++D+ G K+ ++
Sbjct: 624 NITITSLLSACNYGRDVNQAIEVFRDMVSKHGMKPCLEHYGLMVDLLASAGETDKALRLM 683
Query: 336 VLMPHK 341
MP+K
Sbjct: 684 EEMPYK 689
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/385 (22%), Positives = 163/385 (42%), Gaps = 92/385 (23%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYN 41
G VH ++ G+ C F+ S L +++ W ++M Y
Sbjct: 167 FGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLDDARKVFDYIPDRNAVAWNALMVGYV 226
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G YEE + L M +G+ P A + + GK +
Sbjct: 227 QNGMYEEAIRLLSEMRKEGIEPTRVTVSTCLSASANMGGIEEGKQSH------------- 273
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ I +GL + D ++ S+++FY K ++ + F + +KD+
Sbjct: 274 -------------AIAIVNGL----ELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDV 316
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
V+WN +++GY G EE + M + +++ + ++LS +++A + +KLGK I
Sbjct: 317 VTWNLLISGYVQQGLVEEAIYMCQLMR--RENLKFDCVTLSTLMSAATSTQNLKLGKEIQ 374
Query: 222 GYVLRHHIH-----LSTA------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y +RH + STA CG ++ + VF+ +D+++WN+++SA+ SG
Sbjct: 375 CYCIRHGLESDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSG 434
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQK 330
+AL L ++ + +V PN +T WN +I R G + +
Sbjct: 435 EALRLFYEMQLESVPPNVIT------------------------WNLIILSLLRNGQVNE 470
Query: 331 SRKIFVLMPHK----NLVSWNVMIS 351
++++F+ M NL+SW M++
Sbjct: 471 AKEMFLQMQSSGIFPNLISWTTMMN 495
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 146/305 (47%), Gaps = 44/305 (14%)
Query: 77 ELKDYRVGKDVYDYMIS-IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNS 135
+ ++ R+G ++Y ++ +E + C + + +K G DF N
Sbjct: 38 DYRNIRIGPEIYGEILQGCVYERDLCTGQQIHAQILKKG--------------DFYARNE 83
Query: 136 LID-----FYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
I+ FYAKC L+++ FSK++ +++ SW A++ G E L+ +EM+
Sbjct: 84 YIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEGA--LMGFVEML 141
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVI 239
+ + P+ + V AC ++ + G+ +HGYV + +H + CG +
Sbjct: 142 ENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLD 201
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ VF+ + R+ V WN+++ +V++G +A+ LL ++ ++P VT+ + L A
Sbjct: 202 DARKVFDYIPDRNAVAWNALMVGYVQNGMYEEAIRLLSEMRKEGIEPTRVTVSTCLSASA 261
Query: 300 KLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
+ + + GL + + ++++ Y + G I+ + IF M K++V+WN+
Sbjct: 262 NMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDGMIEKDVVTWNL 321
Query: 349 MISVY 353
+IS Y
Sbjct: 322 LISGY 326
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 93/217 (42%), Gaps = 18/217 (8%)
Query: 22 LGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY 81
GS+L + +M+ Y + G E + L+ + D GV+PD+ + AC+ +D
Sbjct: 581 FGSKLCSELPLYNAMISAYALYGKVREAITLYRSLEDGGVKPDNITITSLLSACNYGRDV 640
Query: 82 RVGKDVYDYMISIKFEGNACVKRP--LLDLFIKCGRMEITSGLFEEM--DQDFLVNNSLI 137
+V+ M+S K C++ ++DL G + L EEM D + SL
Sbjct: 641 NQAIEVFRDMVS-KHGMKPCLEHYGLMVDLLASAGETDKALRLMEEMPYKPDARMVQSLF 699
Query: 138 DFYAKCRYLK-VSHCKFSKIKQKDLVSWNAML--AGYALGGFREEVTNLLDEMEMIQTDM 194
+ +K + V + ++ + S N ++ YA+ G +EV + + M++
Sbjct: 700 ESCSKQHKTELVEYLSKHLLESEPDNSGNYVMISNAYAVEGSWDEVAKMREMMKVKGLKK 759
Query: 195 QPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHL 231
+P + Q+KG + G +H +V HL
Sbjct: 760 KPG--------CSWIQIKGEEEG--VHVFVANDKTHL 786
>gi|7523419|emb|CAB86438.1| putative protein [Arabidopsis thaliana]
Length = 1017
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 156/346 (45%), Gaps = 56/346 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+G Y G + L++ M +GV P + KAC++L+D R G +++ ++
Sbjct: 113 WNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLV 172
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ + F+VN +L+ YAK L +
Sbjct: 173 KLGYHSTG-----------------------------FIVN-ALVSMYAKNDDLSAARRL 202
Query: 153 FSKIKQK-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++K D V WN++L+ Y+ G E L EM M T PN+ ++ L AC
Sbjct: 203 FDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHM--TGPAPNSYTIVSALTACDGF 260
Query: 212 KGVKLGKAIHGYVLRHHIHLS------------TACGFVICSCSVFNQLSTRDVVVWNSI 259
KLGK IH VL+ H S T CG + + + Q++ DVV WNS+
Sbjct: 261 SYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSL 320
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----W 315
I +V++ +AL+ D+I A K + V++ S++ A +L+ L G+ ++V W
Sbjct: 321 IKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGW 380
Query: 316 -------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
N LIDMY +C + F+ M K+L+SW +I+ Y
Sbjct: 381 DSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYA 426
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 74/342 (21%), Positives = 150/342 (43%), Gaps = 56/342 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ Y+ G E + LF M G P+ + AC ++GK+++ ++
Sbjct: 215 WNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVL 274
Query: 93 -SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
S V L+ ++ +CG+M + +M NN+
Sbjct: 275 KSSTHSSELYVCNALIAMYTRCGKMPQAERILRQM------NNA---------------- 312
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
D+V+WN+++ GY +E +MI + + +S++ ++AA ++
Sbjct: 313 --------DVVTWNSLIKGYVQNLMYKEALEFFS--DMIAAGHKSDEVSMTSIIAASGRL 362
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ G +H YV++H I + + C F ++ +D++ W ++I
Sbjct: 363 SNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVI 422
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLG 309
+ + ++ V+AL+L RDV ++ + + + S+L A L + L +GL
Sbjct: 423 AGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL- 481
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ + N L+D+YG+C + + ++F + K++VSW MIS
Sbjct: 482 LDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMIS 523
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 150/344 (43%), Gaps = 53/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W S++ Y Y+E + F MI G + D + A L + G +++ Y+
Sbjct: 316 TWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYV 375
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I ++ N V L+D++ KC L M + FL
Sbjct: 376 IKHGWDSNLQVGNTLIDMYSKC-------NLTCYMGRAFL-------------------- 408
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
++ KDL+SW ++AGYA E L ++ + M+ + + L +L A + +
Sbjct: 409 ---RMHDKDLISWTTVIAGYAQNDCHVEALELF--RDVAKKRMEIDEMILGSILRASSVL 463
Query: 212 KGVKLGKAIHGYVLRHH----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
K + + K IH ++LR + + C + + VF + +DVV W S+IS
Sbjct: 464 KSMLIVKEIHCHILRKGLLDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMIS 523
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN----- 316
+ +G +A++L R ++ + ++V ++ +L A L+AL +G ++
Sbjct: 524 SSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCL 583
Query: 317 ------ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
A++DMY CG +Q ++ +F + K L+ + MI+ YG
Sbjct: 584 EGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYG 627
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 121/258 (46%), Gaps = 38/258 (14%)
Query: 129 DFLVNNSLIDFYAKC-----RYLKVSHCK-FSKIKQKDLVSWNAMLAGYALGGFREEVTN 182
D NNS ++ +A + VS K F ++ + +WN M+ Y G E +
Sbjct: 72 DVSENNSPVEAFAYVLELCGKRRAVSQEKVFDEMPDRTAFAWNTMIGAYVSNG--EPASA 129
Query: 183 LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVI--- 239
L M + S +L ACA+++ ++ G +H +++ H + GF++
Sbjct: 130 LALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYH---STGFIVNAL 186
Query: 240 -----------CSCSVFNQLSTR-DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
+ +F+ + D V+WNSI+S++ SG+ ++ L+L R++ + PN
Sbjct: 187 VSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPN 246
Query: 288 TVTIVSVLPAC--LKLAALPQGL----------GTGSFVWNALIDMYGRCGAIQKSRKIF 335
+ TIVS L AC A L + + + +V NALI MY RCG + ++ +I
Sbjct: 247 SYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERIL 306
Query: 336 VLMPHKNLVSWNVMISVY 353
M + ++V+WN +I Y
Sbjct: 307 RQMNNADVVTWNSLIKGY 324
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/338 (23%), Positives = 158/338 (46%), Gaps = 65/338 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF--CNWTSMMG-----MYN---------VLGYYE 47
G+++HA++I G + +G+ L++++ CN T MG M++ + GY +
Sbjct: 368 GMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQ 427
Query: 48 -----EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
E + LF + K + D + + +A S LK + K+++ +++
Sbjct: 428 NDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHIL---------- 477
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
++ LLD I+ N L+D Y KCR + + F IK KD+V
Sbjct: 478 RKGLLDTVIQ---------------------NELVDVYGKCRNMGYATRVFESIKGKDVV 516
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW +M++ AL G E L M++T + ++++L +L+A A + + G+ IH
Sbjct: 517 SWTSMISSSALNGNESEAVELF--RRMVETGLSADSVALLCILSAAASLSALNKGREIHC 574
Query: 223 YVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
Y+LR + + CG + + +VF+++ + ++ + S+I+A+ G
Sbjct: 575 YLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKA 634
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG 309
A++L + NV P+ ++ +++L AC L +G G
Sbjct: 635 AVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRG 672
>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 614
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 92/397 (23%), Positives = 179/397 (45%), Gaps = 52/397 (13%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G +VHA ++ G+E ++ + ++++ +W M+ Y
Sbjct: 127 GEKVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVR 186
Query: 43 LGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+EE V+++ M + +P+ AC+ L++ +GK+++DY+ S + +
Sbjct: 187 CKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIAS-ELDLTTI 245
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
+ LLD++ KCG + + +F+ M ++ S++ Y C L + F + +D
Sbjct: 246 MGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSPSRD 305
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+V W AM+ GY EE L EM++ ++P+ + +L CAQ ++ GK I
Sbjct: 306 IVLWTAMINGYVQFNRFEETIALFGEMQI--RGVKPDKFIVVTLLTGCAQSGALEQGKWI 363
Query: 221 HGYVLRHHIHLSTACG------FVICSC-----SVFNQLSTRDVVVWNSIISAFVRSGQV 269
H Y+ + I + G + C C +FN L +D W SII +G+
Sbjct: 364 HNYIDENRIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGKP 423
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNA 317
+AL+L + + +KP+ +T V+VL AC + +G + +
Sbjct: 424 SEALELFKAMQTCGLKPDDITFVAVLSACSHAGLVEEGRKLFHSMSSMYHIEPNLEHYGC 483
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
ID+ GR G +Q++ ++ +P +N +++ +YG
Sbjct: 484 FIDLLGRAGLLQEAEELVKKLPAQNN---EIIVPLYG 517
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/359 (23%), Positives = 160/359 (44%), Gaps = 83/359 (23%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G + ++LF + + GV PD++ P V K + + R G+ V+ +++ E + V
Sbjct: 87 GSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIGEVREGEKVHAFVVKTGLEFDPYVC 146
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
+D++ + G +E + +FEEM +D VS
Sbjct: 147 NSFMDMYAELGLVEGFTQVFEEM------------------------------PDRDAVS 176
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
WN M++GY EE ++ M +++ +PN ++ L+ACA ++ ++LGK IH Y
Sbjct: 177 WNIMISGYVRCKRFEEAVDVYRRM-WTESNEKPNEATVVSTLSACAVLRNLELGKEIHDY 235
Query: 224 VLRH-------------------HIHL-----------------STACGFVIC-----SC 242
+ H+ + S G+VIC +
Sbjct: 236 IASELDLTTIMGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQAR 295
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
++F + +RD+V+W ++I+ +V+ + + + L ++ + VKP+ +V++L C +
Sbjct: 296 NLFERSPSRDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSG 355
Query: 303 ALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
AL QG + + V ALI+MY +CG I+KS +IF + K+ SW +I
Sbjct: 356 ALEQGKWIHNYIDENRIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSII 414
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 11/121 (9%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP--ACL-- 299
+FN + + ++N +I AFV+SG A+ L + + V P+ T VL C+
Sbjct: 64 IFNYIHDPSLFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIGE 123
Query: 300 -----KLAA--LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
K+ A + GL +V N+ +DMY G ++ ++F MP ++ VSWN+MIS
Sbjct: 124 VREGEKVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISG 183
Query: 353 Y 353
Y
Sbjct: 184 Y 184
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 159/328 (48%), Gaps = 27/328 (8%)
Query: 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL 107
+ + LFY + V PD F C V +AC L D G+ ++ + + F N ++ ++
Sbjct: 111 DAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIV 170
Query: 108 DLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNA 166
L+ CG M LFE+M Q D + N +I K + ++ FS++ ++++ SW +
Sbjct: 171 HLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTS 230
Query: 167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR 226
M+AGY G +E +L +ME + ++ N +++ VLAACA + + LG IH Y R
Sbjct: 231 MIAGYVQCGKAKEAIHLFAKME--EAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNR 288
Query: 227 HH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDL 275
H I + CG + +C VF ++ R VV W+++I G+ +AL L
Sbjct: 289 HGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRL 348
Query: 276 LRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNALIDMYG 323
D+ ++PN VT + +L AC + + +G + + + ++D+
Sbjct: 349 FSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLS 408
Query: 324 RCGAIQKSRKIFVLMPHK-NLVSWNVMI 350
R G + ++ + + MP K N V W ++
Sbjct: 409 RAGLLHEAHEFILNMPMKPNGVVWGALL 436
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 32/195 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ Y G +E ++LF M + GV+ + V AC++L +G +++Y
Sbjct: 227 SWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYS 286
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F+ N + L+D+++KCG +E +FEEM+
Sbjct: 287 NRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEME------------------------ 322
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
++ +VSW+AM+ G A+ G EE L +M Q ++PN ++ G+L AC+ +
Sbjct: 323 ------ERTVVSWSAMIGGLAMHGRAEEALRLFSDMS--QVGIEPNGVTFIGLLHACSHM 374
Query: 212 KGVKLGKAIHGYVLR 226
+ G+ + R
Sbjct: 375 GLISEGRRFFASMTR 389
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 11/111 (9%)
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---- 307
+ VWNS + A +DA+ L + +V P+T T SVL ACL L L G
Sbjct: 92 ETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILH 151
Query: 308 -------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ ++ N ++ +Y CG + ++R +F MP +++V+WN+MI+
Sbjct: 152 GVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIA 202
>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
Length = 805
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/372 (26%), Positives = 177/372 (47%), Gaps = 80/372 (21%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDV--YDY 90
W M+ Y +G ++E + LF +M++KG+ K ++ SEL D +DV ++
Sbjct: 168 WNFMVSEYAKIGDFKESICLFKIMVEKGIEG------KRPESASELFDKLCDRDVISWNS 221
Query: 91 MISIKFEGNACVKRPL------------------LDLFIKC--------GRMEITSGLFE 124
MIS + N +R L + + + C G+ + +
Sbjct: 222 MIS-GYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS 280
Query: 125 EMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLL 184
++ +N+L+D Y+KC L + F K+ ++++VSW +M+AGY G + LL
Sbjct: 281 TFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLL 340
Query: 185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LST 233
+ME + ++ + ++ + +L ACA+ + GK +H Y+ +++ + T
Sbjct: 341 QQME--KEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYT 398
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
CG + + SVF+ + +D++ WN++I +KP++ T+
Sbjct: 399 KCGSMDGANSVFSTMVVKDIISWNTMI---------------------GELKPDSRTMAC 437
Query: 294 VLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
+LPAC L+AL +G + V NAL+D+Y +CG + +R +F ++P K+
Sbjct: 438 ILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKD 497
Query: 343 LVSWNVMISVYG 354
LVSW VMIS YG
Sbjct: 498 LVSWTVMISGYG 509
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 142/331 (42%), Gaps = 76/331 (22%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ Y G + + L M +GV+ D + AC+ GKDV+DY
Sbjct: 319 SWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDY- 377
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
IK ME S LF V N+L+D Y KC + ++
Sbjct: 378 -------------------IKANNME--SNLF--------VCNALMDMYTKCGSMDGANS 408
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS + KD++SWN M+ +++P++ +++ +L ACA +
Sbjct: 409 VFSTMVVKDIISWNTMIG-----------------------ELKPDSRTMACILPACASL 445
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ GK IHGY+LR+ + L CG + + +F+ + ++D+V W +I
Sbjct: 446 SALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMI 505
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN---- 316
S + G +A+ ++ A ++P+ V+ +S+L AC L QG + N
Sbjct: 506 SGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNI 565
Query: 317 --------ALIDMYGRCGAIQKSRKIFVLMP 339
++D+ R G + K+ + +P
Sbjct: 566 EPKLEHYACMVDLLSRTGNLSKAYEFIETLP 596
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/291 (19%), Positives = 111/291 (38%), Gaps = 86/291 (29%)
Query: 140 YAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI----QTDMQ 195
++ C +++S I + + +NA + + ++ NL + ME++ +++++
Sbjct: 46 FSSCLPIRISATPTRTI-DRQVTDYNAKILHFC------QLGNLENAMELVCMCQKSELE 98
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSV 244
T + S VL CA K + GK +H + +++ L CG + V
Sbjct: 99 --TKTYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRV 156
Query: 245 FNQLSTRDVVVW------------------------------------------------ 256
F+ + ++V +W
Sbjct: 157 FDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDV 216
Query: 257 ---NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF 313
NS+IS +V +G L++ + ++ + + TI+SVL C L G S
Sbjct: 217 ISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSL 276
Query: 314 V-----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
N L+DMY +CG + + ++F M +N+VSW MI+ Y
Sbjct: 277 AIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGY 327
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 13/115 (11%)
Query: 251 RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGT 310
R V +N+ I F + G + +A++L+ + + T T SVL C +L G
Sbjct: 64 RQVTDYNAKILHFCQLGNLENAMELV--CMCQKSELETKTYSSVLQLCAGSKSLTDGKKV 121
Query: 311 GSFVWN-----------ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
S + + L+ +Y CG +++ R++F M KN+ WN M+S Y
Sbjct: 122 HSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYA 176
>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
Length = 954
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 112/442 (25%), Positives = 191/442 (43%), Gaps = 92/442 (20%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN------------------------WTSMMG 38
L Q+H+ +IV G AFL ++++ V+ W S++
Sbjct: 49 LSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILR 108
Query: 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
GY EE + ++ M GV D F P V +AC+ + ++ + V+ +++ + F+
Sbjct: 109 ANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQW 168
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKIK 157
N V L+ ++ K GRM+ +FE M V+ N+++ YA + F +
Sbjct: 169 NLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMG 228
Query: 158 ----QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG 213
+ +LV+W ++L+ +A G E L M M + +L+ VL+ +
Sbjct: 229 SAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRM--RGIGATAEALAVVLSVSVDLAA 286
Query: 214 VKLGKAIHGYVLR------------------HHIHLSTA--------------------- 234
GK IHGYV++ H +++ A
Sbjct: 287 FDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISS 346
Query: 235 ---CGFVICSCSVFNQLSTRD--------VVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283
G+ + ++F QL D VV W+++I F GQ +AL+L R + +A
Sbjct: 347 YADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAK 406
Query: 284 VKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSR 332
VK N+VTI SVL C +LAAL G + V N LI+MY + G+ ++
Sbjct: 407 VKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGN 466
Query: 333 KIFVLMPHKNLVSWNVMISVYG 354
+F + +K+L+SWN M++ YG
Sbjct: 467 LVFEKIENKDLISWNTMVAGYG 488
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/369 (24%), Positives = 173/369 (46%), Gaps = 36/369 (9%)
Query: 17 ELCAFLGSQLLEV-FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKAC 75
E+ +GS LE WTS++ + G + E + LF M +G+ V
Sbjct: 222 EMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVS 281
Query: 76 SELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-N 134
+L + GK ++ Y++ FE VK L+ L+ K G + LF E+ +V+ N
Sbjct: 282 VDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWN 341
Query: 135 SLIDFYAKCRYLKVSHCKFSKIKQKD--------LVSWNAMLAGYALGGFREEVTNLLDE 186
+LI YA + + F ++++ D +VSW+A++ G+A G EE L
Sbjct: 342 ALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRR 401
Query: 187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTAC 235
M++ + ++ N+++++ VL+ CA++ + LG+ IHG+V+R I++ T
Sbjct: 402 MQLAK--VKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKS 459
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
G VF ++ +D++ WN++++ + G +A+ +I +P+ VT V+VL
Sbjct: 460 GSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVL 519
Query: 296 PACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFVLMP-HKN 342
AC + +G + + ++D+ GR G +Q++ K+ MP N
Sbjct: 520 SACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPN 579
Query: 343 LVSWNVMIS 351
W +++
Sbjct: 580 ACVWGALLN 588
>gi|357114151|ref|XP_003558864.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
chloroplastic-like [Brachypodium distachyon]
Length = 782
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 132/251 (52%), Gaps = 24/251 (9%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
++QD V SL+D Y KC + + F+ + + +V+WN M+ GYAL G EE +
Sbjct: 241 LEQDVKVGTSLLDMYCKCGAIASAEGMFATMPSRTVVTWNCMIGGYALNGCPEEAFDCF- 299
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH----HIHLSTA------- 234
++M Q ++ +LAACAQ + G+++HGYV R H+ L TA
Sbjct: 300 -VQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYVTRSQFLPHVVLETALLEMYSK 358
Query: 235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV 294
G V S ++F Q++ + +V WN++I+A++ +A+ L +++ + P+ T+ +V
Sbjct: 359 VGKVKSSETIFGQMTNKTLVSWNNMIAAYMYKEMYNEAITLFLELLNQPLYPDYFTMSAV 418
Query: 295 LPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
+PA + L L Q G + V NA++ MY RCG + SRKIF M K++
Sbjct: 419 VPAFVLLGLLRQCRQMHSYIVRLDYGENTLVTNAVMHMYARCGDVVSSRKIFDKMAGKDV 478
Query: 344 VSWNVMISVYG 354
+SWN +I Y
Sbjct: 479 ISWNTIIMGYA 489
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 141/333 (42%), Gaps = 54/333 (16%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G E + + M+ G RPD F P V K C+ L G+ + I + G+
Sbjct: 86 GLPEAALAAYRAMLAAGARPDRFTFPVVVKCCARLGALEEGRAAHSAAIRLGLVGS---- 141
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
E+ +G NSL+ FYAK + + F + +D+V+
Sbjct: 142 -------------EVYTG------------NSLLAFYAKLGMVADAERVFDGMPVRDIVT 176
Query: 164 WNAMLAGYALGGFREEVTNLLDEM-EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
WN+M+ GY G + EM E +Q +Q + + + LAAC + G+ +H
Sbjct: 177 WNSMVDGYVSNGLGALALDCFREMHEGLQ--VQHDGVGIIAALAACCLDSALMQGREVHA 234
Query: 223 YVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
YV+RH + + CG + + +F + +R VV WN +I + +G +
Sbjct: 235 YVIRHGLEQDVKVGTSLLDMYCKCGAIASAEGMFATMPSRTVVTWNCMIGGYALNGCPEE 294
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW-----------NALID 320
A D + + VT +++L AC + + G +V AL++
Sbjct: 295 AFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYVTRSQFLPHVVLETALLE 354
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
MY + G ++ S IF M +K LVSWN MI+ Y
Sbjct: 355 MYSKVGKVKSSETIFGQMTNKTLVSWNNMIAAY 387
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 145/327 (44%), Gaps = 64/327 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G +VHA++I G+E +G+ LL+++C W M+G Y +
Sbjct: 229 GREVHAYVIRHGLEQDVKVGTSLLDMYCKCGAIASAEGMFATMPSRTVVTWNCMIGGYAL 288
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G EE + F M +G + + + AC++ + G+ V+ Y+ +F + +
Sbjct: 289 NGCPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYVTRSQFLPHVVL 348
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+ LL+++ K G+ +K S F ++ K LV
Sbjct: 349 ETALLEMYSKVGK------------------------------VKSSETIFGQMTNKTLV 378
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SWN M+A Y E L +E++ + P+ ++S V+ A + ++ + +H
Sbjct: 379 SWNNMIAAYMYKEMYNEAITLF--LELLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHS 436
Query: 223 YVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
Y++R +H+ CG V+ S +F++++ +DV+ WN+II + GQ
Sbjct: 437 YIVRLDYGENTLVTNAVMHMYARCGDVVSSRKIFDKMAGKDVISWNTIIMGYAIHGQGKI 496
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPAC 298
AL++ ++ ++PN T VSVL AC
Sbjct: 497 ALEMFSEMKSNGLQPNESTFVSVLTAC 523
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 99/214 (46%), Gaps = 26/214 (12%)
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
N ++ G+A G E L M+ +P+ + V+ CA++ ++ G+A H
Sbjct: 76 NVVIRGFADAGLPEAA--LAAYRAMLAAGARPDRFTFPVVVKCCARLGALEEGRAAHSAA 133
Query: 225 LR------------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
+R + G V + VF+ + RD+V WNS++ +V +G A
Sbjct: 134 IRLGLVGSEVYTGNSLLAFYAKLGMVADAERVFDGMPVRDIVTWNSMVDGYVSNGLGALA 193
Query: 273 LDLLRDVIVA-NVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNALID 320
LD R++ V+ + V I++ L AC +AL QG ++V +L+D
Sbjct: 194 LDCFREMHEGLQVQHDGVGIIAALAACCLDSALMQGREVHAYVIRHGLEQDVKVGTSLLD 253
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
MY +CGAI + +F MP + +V+WN MI Y
Sbjct: 254 MYCKCGAIASAEGMFATMPSRTVVTWNCMIGGYA 287
>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 153/303 (50%), Gaps = 22/303 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT+++ + + G +E+ +N + M+ +GV P+ F + K C GK ++ +
Sbjct: 96 WTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCP----IEPGKALHSQAV 151
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHC 151
+ F+ + V+ LLD++ + G + LF+ M + LV+ +++ YAK L +
Sbjct: 152 KLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARV 211
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++++D V WN M+ GY G E L M++ +PN +++ VL+AC Q+
Sbjct: 212 LFDGMEERDGVCWNVMIDGYTQNGMPNEALVLF--RRMLKAKAKPNEVTVLSVLSACGQL 269
Query: 212 KGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
++ G+ +H Y+ ++ ++H+ TA CG + + VF+++ +DVV WNS+I
Sbjct: 270 GALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMI 329
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALID 320
+ G +AL L + + + P +T + +L AC + +G ++N + D
Sbjct: 330 VGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWD----IFNKMKD 385
Query: 321 MYG 323
YG
Sbjct: 386 EYG 388
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 130/292 (44%), Gaps = 60/292 (20%)
Query: 116 MEITSGLFEE-MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALG 174
++I + LF +D ++N L YA L S F + + + W A++ G+AL
Sbjct: 47 LQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALR 106
Query: 175 GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG-----------Y 223
G E+ N +M+ ++PN + S +L C ++ GKA+H Y
Sbjct: 107 GLHEQALNFY--AQMLTQGVEPNAFTFSSILKLCP----IEPGKALHSQAVKLGFDSDLY 160
Query: 224 VLRHHIHLSTACGFVICSCSVFNQL-------------------------------STRD 252
V + + G V+ + +F+ + RD
Sbjct: 161 VRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERD 220
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS 312
V WN +I + ++G +AL L R ++ A KPN VT++SVL AC +L AL G S
Sbjct: 221 GVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHS 280
Query: 313 FVWN-----------ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
++ N AL+DMY +CG+++ +R +F + K++V+WN MI Y
Sbjct: 281 YIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGY 332
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 110/271 (40%), Gaps = 64/271 (23%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W M+ Y G E + LF M+ +P+ V AC +L G+ V+ Y+
Sbjct: 224 WNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYI- 282
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
E N + + V +L+D Y+KC L+ +
Sbjct: 283 ----ENNG-------------------------IQFNVHVGTALVDMYSKCGSLEDARLV 313
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F KI KD+V+WN+M+ GYA+ GF +E L M + + P I+ G+L+AC
Sbjct: 314 FDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFK--SMCRMGLHPTNITFIGILSACGH-- 369
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTR-----DVVVWNSIISAFVRSG 267
G+V +FN++ + + +++ R+G
Sbjct: 370 ----------------------SGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAG 407
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
V A +L++++ N++P+ V ++L AC
Sbjct: 408 HVEQAYELVKNM---NIEPDPVLWGTLLGAC 435
>gi|255546193|ref|XP_002514156.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546612|gb|EEF48110.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 885
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/393 (24%), Positives = 169/393 (43%), Gaps = 75/393 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G +H+ I EL FLG L++++ W++++ +
Sbjct: 314 GKALHSLSIRRAYELDEFLGCNLVDMYSKCGMAYEALKVFNMIEEPDIVAWSAIITGLDQ 373
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G+ +E LF+LM KGVRP+ F V A + + D +G+ ++ + +E
Sbjct: 374 QGHSQEAAELFHLMRQKGVRPNQFSFASVISAATNVGDLYLGQSIHCCICKYGYE----- 428
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
D V N+LI Y K +++ F + +DLV
Sbjct: 429 -------------------------SDNSVGNALITMYMKSGFVQDGIRVFDTMTNRDLV 463
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SWNA+L+G+ F L +M+ + PN + GVL +C+ + V GK +H
Sbjct: 464 SWNALLSGFY--DFETSDQGLRIFCQMLMEGLVPNLYTFVGVLRSCSSLLNVWFGKQVHA 521
Query: 223 YVLRHHIHLSTACGFVICSCSV-----------FNQLSTRDVVVWNSIISAFVRSGQVVD 271
+++++ + + G + FN+L+ RD+ W II+ ++ +
Sbjct: 522 HIIKNSLDGNDFVGTALIDMYAKNRCLEDADVAFNKLTNRDLFTWTVIIAGHSQTDKAEK 581
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNALID 320
A+ L ++ +KPN T+ S L C ++A L G S FV +AL+D
Sbjct: 582 AVKYLGQMLREGIKPNEFTLASCLSGCSRMATLGNGQQLHSLAIKSGHSGDVFVSSALVD 641
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
MYG+CG ++ + IF + ++ V+WN +I Y
Sbjct: 642 MYGKCGCMEDAEAIFKGLFSRDTVAWNTIICGY 674
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 100/393 (25%), Positives = 167/393 (42%), Gaps = 75/393 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G +H ++I G+E + L L+ ++ +WT+++ Y
Sbjct: 112 GTAIHGNVIKSGLEPDSHLWVSLINLYAKCGSLAFARKVLVGMRERDVVSWTALIAGYVS 171
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G + V + M + + P+ F V KA S D + GK ++ I
Sbjct: 172 EGCGSDGVKAYCEMRKENICPNEFTLATVLKASSMCSDIKFGKLIHLEAIKTGL------ 225
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
LLDLF V ++L+D YAK ++++ F + +K+ V
Sbjct: 226 ---LLDLF---------------------VGSALVDLYAKFGEMELADRVFFGMPEKNNV 261
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SWNA+L GYA G + V L M++ +M +LS VL CA ++ GKA+H
Sbjct: 262 SWNALLNGYAQRGDGKNVLKLF--CRMLECEMNFTNYTLSTVLKGCANSGNLREGKALHS 319
Query: 223 YVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+R L + CG + VFN + D+V W++II+ + G +
Sbjct: 320 LSIRRAYELDEFLGCNLVDMYSKCGMAYEALKVFNMIEEPDIVAWSAIITGLDQQGHSQE 379
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWNALID 320
A +L + V+PN + SV+ A + L G + + V NALI
Sbjct: 380 AAELFHLMRQKGVRPNQFSFASVISAATNVGDLYLGQSIHCCICKYGYESDNSVGNALIT 439
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
MY + G +Q ++F M +++LVSWN ++S +
Sbjct: 440 MYMKSGFVQDGIRVFDTMTNRDLVSWNALLSGF 472
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 139/287 (48%), Gaps = 43/287 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ + ++ + +F M+ +G+ P+ + V ++CS L + GK V+ ++
Sbjct: 464 SWNALLSGFYDFETSDQGLRIFCQMLMEGLVPNLYTFVGVLRSCSSLLNVWFGKQVHAHI 523
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I +GN DF V +LID YAK R L+ +
Sbjct: 524 IKNSLDGN-----------------------------DF-VGTALIDMYAKNRCLEDADV 553
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+K+ +DL +W ++AG++ E+ L +M ++ ++PN +L+ L+ C+++
Sbjct: 554 AFNKLTNRDLFTWTVIIAGHSQTDKAEKAVKYLGQM--LREGIKPNEFTLASCLSGCSRM 611
Query: 212 KGVKLGKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ G+ +H ++ + +S+A CG + + ++F L +RD V WN+II
Sbjct: 612 ATLGNGQQLHSLAIKSGHSGDVFVSSALVDMYGKCGCMEDAEAIFKGLFSRDTVAWNTII 671
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
+ + GQ AL+ R ++ ++ P+ VT + VL AC + + +G
Sbjct: 672 CGYSQHGQGQKALEAFRMMLDEDIDPDEVTFIGVLAACSYMGWVEEG 718
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 93/394 (23%), Positives = 169/394 (42%), Gaps = 75/394 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++ G +H I G+ L F+GS L++++ +W +++
Sbjct: 210 IKFGKLIHLEAIKTGLLLDLFVGSALVDLYAKFGEMELADRVFFGMPEKNNVSWNALLNG 269
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G + ++ LF M++ + ++ V K C+ + R GK ++ I +E +
Sbjct: 270 YAQRGDGKNVLKLFCRMLECEMNFTNYTLSTVLKGCANSGNLREGKALHSLSIRRAYELD 329
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ L+D++ KCG + + A LKV F+ I++
Sbjct: 330 EFLGCNLVDMYSKCG----------------------MAYEA----LKV----FNMIEEP 359
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+V+W+A++ G G +E L M Q ++PN S + V++A V + LG++
Sbjct: 360 DIVAWSAIITGLDQQGHSQEAAELFHLMR--QKGVRPNQFSFASVISAATNVGDLYLGQS 417
Query: 220 IH------GY-----VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH GY V I + GFV VF+ ++ RD+V WN+++S F
Sbjct: 418 IHCCICKYGYESDNSVGNALITMYMKSGFVQDGIRVFDTMTNRDLVSWNALLSGFYDFET 477
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLGTGSFVWNA 317
L + +++ + PN T V VL +C L + L FV A
Sbjct: 478 SDQGLRIFCQMLMEGLVPNLYTFVGVLRSCSSLLNVWFGKQVHAHIIKNSLDGNDFVGTA 537
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
LIDMY + ++ + F + +++L +W V+I+
Sbjct: 538 LIDMYAKNRCLEDADVAFNKLTNRDLFTWTVIIA 571
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 22/175 (12%)
Query: 202 SGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLST 250
SG+L CA + G AIHG V++ I+L CG + + V +
Sbjct: 97 SGMLRECASKGNLNEGTAIHGNVIKSGLEPDSHLWVSLINLYAKCGSLAFARKVLVGMRE 156
Query: 251 RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------L 299
RDVV W ++I+ +V G D + ++ N+ PN T+ +VL A +
Sbjct: 157 RDVVSWTALIAGYVSEGCGSDGVKAYCEMRKENICPNEFTLATVLKASSMCSDIKFGKLI 216
Query: 300 KLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L A+ GL FV +AL+D+Y + G ++ + ++F MP KN VSWN +++ Y
Sbjct: 217 HLEAIKTGLLLDLFVGSALVDLYAKFGEMELADRVFFGMPEKNNVSWNALLNGYA 271
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 100/237 (42%), Gaps = 53/237 (22%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYN 41
G QVHAH+I ++ F+G+ L++++ WT ++ ++
Sbjct: 515 FGKQVHAHIIKNSLDGNDFVGTALIDMYAKNRCLEDADVAFNKLTNRDLFTWTVIIAGHS 574
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
E+ V M+ +G++P+ F CS + G+ ++
Sbjct: 575 QTDKAEKAVKYLGQMLREGIKPNEFTLASCLSGCSRMATLGNGQQLHS------------ 622
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
L IK G SG D V+++L+D Y KC ++ + F + +D
Sbjct: 623 -------LAIKSGH----SG-------DVFVSSALVDMYGKCGCMEDAEAIFKGLFSRDT 664
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
V+WN ++ GY+ G ++ M+ D+ P+ ++ GVLAAC+ + V+ GK
Sbjct: 665 VAWNTIICGYSQHGQGQKALEAF--RMMLDEDIDPDEVTFIGVLAACSYMGWVEEGK 719
>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 153/303 (50%), Gaps = 22/303 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT+++ + + G +E+ +N + M+ +GV P+ F + K C GK ++ +
Sbjct: 43 WTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCP----IEPGKALHSQAV 98
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHC 151
+ F+ + V+ LLD++ + G + LF+ M + LV+ +++ YAK L +
Sbjct: 99 KLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARV 158
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++++D V WN M+ GY G E L M++ +PN +++ VL+AC Q+
Sbjct: 159 LFDGMEERDGVCWNVMIDGYTQNGMPNEALVLF--RRMLKAKAKPNEVTVLSVLSACGQL 216
Query: 212 KGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
++ G+ +H Y+ ++ ++H+ TA CG + + VF+++ +DVV WNS+I
Sbjct: 217 GALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMI 276
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALID 320
+ G +AL L + + + P +T + +L AC + +G ++N + D
Sbjct: 277 VGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWD----IFNKMKD 332
Query: 321 MYG 323
YG
Sbjct: 333 EYG 335
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 118/267 (44%), Gaps = 59/267 (22%)
Query: 140 YAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI 199
YA L S F + + + W A++ G+AL G E+ N +M+ ++PN
Sbjct: 19 YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFY--AQMLTQGVEPNAF 76
Query: 200 SLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQL 248
+ S +L C ++ GKA+H YV + + G V+ + +F+ +
Sbjct: 77 TFSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTM 132
Query: 249 -------------------------------STRDVVVWNSIISAFVRSGQVVDALDLLR 277
RD V WN +I + ++G +AL L R
Sbjct: 133 PEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFR 192
Query: 278 DVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN-----------ALIDMYGRCG 326
++ A KPN VT++SVL AC +L AL G S++ N AL+DMY +CG
Sbjct: 193 RMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCG 252
Query: 327 AIQKSRKIFVLMPHKNLVSWNVMISVY 353
+++ +R +F + K++V+WN MI Y
Sbjct: 253 SLEDARLVFDKIDDKDVVAWNSMIVGY 279
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 115/283 (40%), Gaps = 65/283 (22%)
Query: 21 FLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD 80
F G + + C W M+ Y G E + LF M+ +P+ V AC +L
Sbjct: 160 FDGMEERDGVC-WNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGA 218
Query: 81 YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFY 140
G+ V+ Y+ E N + + V +L+D Y
Sbjct: 219 LESGRWVHSYI-----ENNG-------------------------IQFNVHVGTALVDMY 248
Query: 141 AKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTIS 200
+KC L+ + F KI KD+V+WN+M+ GYA+ GF +E L M + + P I+
Sbjct: 249 SKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFK--SMCRMGLHPTNIT 306
Query: 201 LSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTR-----DVVV 255
G+L+AC G+V +FN++ +
Sbjct: 307 FIGILSACGH------------------------SGWVTEGWDIFNKMKDEYGIEPKIEH 342
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ +++ R+G V A +L++++ N++P+ V ++L AC
Sbjct: 343 YGCMVNLLGRAGHVEQAYELVKNM---NIEPDPVLWGTLLGAC 382
>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
Length = 688
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 162/339 (47%), Gaps = 33/339 (9%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ Y G E + LF M+ G PD V AC+ L R G+ V+ +M
Sbjct: 219 SWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHM 278
Query: 92 ISI-KFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNN-SLIDFYAKCRYLKVS 149
+ + + + L+D++ KCGR +F+ M +V+ S++ YAK ++ +
Sbjct: 279 VKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDA 338
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
FS++ +K++++WN ++A YA G EE L +++ + + P + VL AC
Sbjct: 339 QVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLF--VQLKRDSIWPTHYTYGNVLNACG 396
Query: 210 QVKGVKLGKAIHGYVLRHH-----------------IHLSTACGFVICSCSVFNQLSTRD 252
+ ++LG+ H +VL+ + + G + VF +++ RD
Sbjct: 397 NIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARD 456
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS 312
V WN++I + ++G+ DAL L ++ +N P++VT++ VL AC + +G
Sbjct: 457 NVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFH 516
Query: 313 FV------------WNALIDMYGRCGAIQKSRKIFVLMP 339
F+ + ++D+ GR G ++++ ++ MP
Sbjct: 517 FMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMP 555
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 131/273 (47%), Gaps = 24/273 (8%)
Query: 106 LLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
L+ + + GR+ +F+ + ++ N+L+ YA+ + F I D S+
Sbjct: 58 LVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSY 117
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
NA++A A G L M D N S + L+ACA K ++ G+ +HG V
Sbjct: 118 NAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALSACAAEKDLRTGEQVHGLV 177
Query: 225 LR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
R +H+ TA C + + VF+ + R+VV WNS+I+ + ++G V +AL
Sbjct: 178 ARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGEAL 237
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNALIDM 321
L +++ P+ VT+ SV+ AC LAA +G L + NAL+DM
Sbjct: 238 VLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDM 297
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
Y +CG ++R IF MP +++VS +++ Y
Sbjct: 298 YAKCGRTWEARCIFDSMPSRSVVSETSILAGYA 330
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 130/287 (45%), Gaps = 62/287 (21%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
D + +L+D YAKC + F + ++++VSWN+++ Y G E L +
Sbjct: 184 DDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLF--V 241
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV-----LRHHIHLSTA-------C 235
EM+ T P+ ++LS V++ACA + + G+ +H ++ LR + L+ A C
Sbjct: 242 EMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKC 301
Query: 236 G---------------FVICSCS----------------VFNQLSTRDVVVWNSIISAFV 264
G V+ S VF+Q+ ++V+ WN +I+A+
Sbjct: 302 GRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYA 361
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------------LG 309
++G+ +A+ L + ++ P T +VL AC +A L G G
Sbjct: 362 QNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFG 421
Query: 310 TGS--FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
S FV N+L+DMY + G+I K+F M ++ VSWN MI Y
Sbjct: 422 PESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYA 468
>gi|297742136|emb|CBI33923.3| unnamed protein product [Vitis vinifera]
Length = 461
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/312 (27%), Positives = 151/312 (48%), Gaps = 44/312 (14%)
Query: 56 MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR 115
M+ K V P+H+ P + K C E+ G+ ++ ++ FE + V+ L+ ++ CGR
Sbjct: 1 MVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGR 60
Query: 116 MEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALG 174
+ +FE D + NS+ID Y K + + F ++ ++DL SWN+M+AGY
Sbjct: 61 IGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYVGN 120
Query: 175 GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA 234
G +L ++M + +S + ++ AQV+ +++
Sbjct: 121 GDMTAAEDLFNKMPF------RDIVSWNCMIDGYAQVQNMEI------------------ 156
Query: 235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV 294
+C +FN + R+VV WN +++ +VR + L + D ++ PN T+VSV
Sbjct: 157 ------ACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMF-DKMMGETMPNEATLVSV 209
Query: 295 LPACLKLAALPQGLGTGSFVWN------------ALIDMYGRCGAIQKSRKIFVLMPHKN 342
L AC L L +G S++ N AL+ MY +CGA+ +R +F M +++
Sbjct: 210 LTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRS 269
Query: 343 LVSWNVMISVYG 354
+VSWN MI YG
Sbjct: 270 VVSWNSMIMGYG 281
>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
Length = 863
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 101/397 (25%), Positives = 173/397 (43%), Gaps = 75/397 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSM-------MGMYN------------ 41
+ G Q+HAH I +G+ +++V+ S+ G+ N
Sbjct: 266 LNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVG 325
Query: 42 --VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
G E + LF MI +R D V+ AC+E K Y G+ V+
Sbjct: 326 LVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVH----------- 374
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
C L IK G D D VNN+++D Y KC+ L ++ F +KQK
Sbjct: 375 -C-------LAIKSG-----------FDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQK 415
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D VSWNA++A G ++ +L EM++ M+P+ + VL ACA ++ ++ G
Sbjct: 416 DSVSWNAIIAALEQNGHYDDT--ILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLM 473
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H V++ + + CG + + + +++ + VV WN+I+S F + +
Sbjct: 474 VHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKE 533
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNA 317
+A +++ +KP+ T +VL C LA + Q + ++ +
Sbjct: 534 SEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISST 593
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L+DMY +CG + S +F + ++ VSWN MI Y
Sbjct: 594 LVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYA 630
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 153/345 (44%), Gaps = 56/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ G+Y++ + F M+ G++PD F V KAC+ L+ G V+D +
Sbjct: 419 SWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKV 478
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I SGL D V ++++D Y KC + +
Sbjct: 479 IK--------------------------SGL----GSDAFVASTVVDMYCKCGIIDEAQK 508
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+I + +VSWNA+L+G++L EE EM + ++P+ + + VL CA +
Sbjct: 509 LHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEM--LDMGLKPDHFTFATVLDTCANL 566
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++LGK IHG +++ + + CG + S VF ++ RD V WN++I
Sbjct: 567 ATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMI 626
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----LGTGSFV- 314
+ G V+AL + + NV PN T V+VL AC + G L T +
Sbjct: 627 CGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKL 686
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ ++D+ GR Q++ K MP + V W ++S+
Sbjct: 687 EPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSI 731
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 151/343 (44%), Gaps = 54/343 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ Y G ++E V+LF M +GV PD + K+CS L++ +G V+
Sbjct: 116 SWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVH--- 172
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
L +K G +EI D ++L+D Y KCR L + C
Sbjct: 173 ----------------ALAVKTG-LEI----------DVRTGSALVDMYGKCRSLDDALC 205
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +++ VSW A +AG + V L +EM + + + S + +CA +
Sbjct: 206 FFYGMPERNWVSWGAAIAGCVQN--EQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAM 263
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSC-----------SVFNQLSTRDVVVWNSII 260
+ G+ +H + +++ G I F L V N+++
Sbjct: 264 SCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMM 323
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLG 309
VR+G ++A+ L + +I ++++ + V++ V AC + A+ G
Sbjct: 324 VGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFD 383
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
V NA++D+YG+C A+ ++ IF M K+ VSWN +I+
Sbjct: 384 VDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAA 426
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 105/232 (45%), Gaps = 53/232 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G+ VH +I G+ AF+ S +++++C +W +++
Sbjct: 468 LEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSG 527
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+++ EE F M+D G++PDHF V C+ L +GK ++ +I
Sbjct: 528 FSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIK------ 581
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+EM D ++++L+D YAKC + S F K++++
Sbjct: 582 ------------------------QEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKR 617
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
D VSWNAM+ GYAL G E + + M+ + ++ PN + VL AC+ V
Sbjct: 618 DFVSWNAMICGYALHGLGVEALRMFERMQ--KENVVPNHATFVAVLRACSHV 667
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/315 (19%), Positives = 140/315 (44%), Gaps = 27/315 (8%)
Query: 61 VRPDHFVCPKVYKACSEL--KDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEI 118
V P +V+++C++ + G+ + M+ F NA V LL ++ +C
Sbjct: 11 VAPARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPNAFVSNCLLQMYARCAGAAC 70
Query: 119 TSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFR 177
+F+ M + D + N+++ Y+ + + F + D+VSWNA+++GY G
Sbjct: 71 ARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMF 130
Query: 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGF 237
+E +L +EM + + P+ + + +L +C+ ++ + LG +H ++ + + G
Sbjct: 131 QESVDLF--VEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGS 188
Query: 238 VIC-----------SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286
+ + F + R+ V W + I+ V++ Q V L+L ++ +
Sbjct: 189 ALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGV 248
Query: 287 NTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIF 335
+ + S +C ++ L G + V A++D+Y + ++ +R+ F
Sbjct: 249 SQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAF 308
Query: 336 VLMPHKNLVSWNVMI 350
+P+ + + N M+
Sbjct: 309 FGLPNHTVETSNAMM 323
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 11/127 (8%)
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
G + + ++F+ + DVV WN+++S + + G +++DL ++ V P+ T +L
Sbjct: 97 GDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLL 156
Query: 296 PACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLV 344
+C L A+ GL +AL+DMYG+C ++ + F MP +N V
Sbjct: 157 KSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWV 216
Query: 345 SWNVMIS 351
SW I+
Sbjct: 217 SWGAAIA 223
>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 882
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 180/392 (45%), Gaps = 77/392 (19%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCN----------------------WTSMMGMYNVL 43
++HA +I G++ F +L++ + + W S++ ++
Sbjct: 25 RIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFSKN 84
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G + E + + + + V PD + P V KAC+ L D +G VY+ ++ + FE
Sbjct: 85 GLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFE------ 138
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
D V N+L+D Y++ L + F ++ +DLVS
Sbjct: 139 ------------------------SDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVS 174
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
WN++++GY+ G+ EE + E++ + + P++ ++S VL A + VK G+ +HG+
Sbjct: 175 WNSLISGYSSHGYYEEALEIYHELK--NSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGF 232
Query: 224 VLRHHIHLSTACGFVICSC-----------SVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
L+ ++ + + VF+++ RD V +N++I +++ V ++
Sbjct: 233 ALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEES 292
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPAC-----LKLAA------LPQGLGTGSFVWNALIDM 321
+ + + + KP+ +T+ SVL AC L LA L G S V N LID+
Sbjct: 293 VRMFLENL-DQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDV 351
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
Y +CG + +R +F M K+ VSWN +IS Y
Sbjct: 352 YAKCGDMITARDVFNSMECKDTVSWNSIISGY 383
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/395 (25%), Positives = 177/395 (44%), Gaps = 78/395 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
E+G V+ ++ G E F+G+ L++++ +W S++ Y
Sbjct: 123 EMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGY 182
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+ GYYEE + +++ + + + PD F V A L + G+ ++ + +
Sbjct: 183 SSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVV 242
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
V L+ +++K R +F+EMD +D
Sbjct: 243 VVNNGLVAMYLKFRRPTDARRVFDEMDV------------------------------RD 272
Query: 161 LVSWNAMLAGY-ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
VS+N M+ GY L E V L+ ++ + P+ +++S VL AC ++ + L K
Sbjct: 273 SVSYNTMICGYLKLEMVEESVRMFLENLDQFK----PDLLTVSSVLRACGHLRDLSLAKY 328
Query: 220 IHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
I+ Y+L+ L + CG +I + VFN + +D V WNSIIS +++SG
Sbjct: 329 IYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGD 388
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNA 317
+++A+ L + +++ + + +T + ++ +LA L G G S V NA
Sbjct: 389 LMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNA 448
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
LIDMY +CG + S KIF M + V+WN +IS
Sbjct: 449 LIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISA 483
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 156/345 (45%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
++ +M+ Y L EE V +F +D+ +PD V +AC L+D + K +Y+YM
Sbjct: 275 SYNTMICGYLKLEMVEESVRMFLENLDQ-FKPDLLTVSSVLRACGHLRDLSLAKYIYNYM 333
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F + V+ N LID YAKC + +
Sbjct: 334 LKAGFVLESTVR------------------------------NILIDVYAKCGDMITARD 363
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ ++ KD VSWN++++GY G E L M +++ Q + I+ +++ ++
Sbjct: 364 VFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEE--QADHITYLMLISVSTRL 421
Query: 212 KGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+K GK +H ++ I + CG V S +F+ + T D V WN++I
Sbjct: 422 ADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVI 481
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLG 309
SA VR G L + + + V P+ T + LP C LAA L G
Sbjct: 482 SACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYE 541
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + NALI+MY +CG ++ S ++F M +++V+W MI YG
Sbjct: 542 SELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYG 586
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/333 (24%), Positives = 140/333 (42%), Gaps = 55/333 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ Y G E + LF +M+ + DH + + L D + GK ++
Sbjct: 375 SWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLH--- 431
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
S + C+ D V+N+LID YAKC + S
Sbjct: 432 -SNGIKSGICI--------------------------DLSVSNALIDMYAKCGEVGDSLK 464
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS + D V+WN +++ A F + T L +M ++++ P+ + L CA +
Sbjct: 465 IFSSMGTGDTVTWNTVIS--ACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASL 522
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+LGK IH +LR I + + CG + S VF ++S RDVV W +I
Sbjct: 523 AAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMI 582
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
A+ G+ AL+ D+ + + P++V ++++ AC + +GL +
Sbjct: 583 YAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKI 642
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMPHK 341
+ ++D+ R I K+ + MP K
Sbjct: 643 DPMIEHYACVVDLLSRSQKISKAEEFIQAMPIK 675
>gi|302816284|ref|XP_002989821.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
gi|300142387|gb|EFJ09088.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
Length = 941
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/357 (24%), Positives = 167/357 (46%), Gaps = 55/357 (15%)
Query: 18 LCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSE 77
L F G VF +WT MM Y+ G+Y E + LF M +G RPD V AC+
Sbjct: 12 LMVFDGISAKNVF-SWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVVFVIALDACAA 70
Query: 78 LKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLI 137
+ G+ ++ ++ SGL + +++NSL+
Sbjct: 71 SGELDHGRQIHSSVVG--------------------------SGL----TSNIIISNSLV 100
Query: 138 DFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN 197
+ Y KC+ + + F + +D+VSW AMLA YA G + L M+ ++PN
Sbjct: 101 NMYGKCQDVPCAEKVFDGMLLRDVVSWTAMLAVYAQNGCWSQALECLSRMD--AEGVKPN 158
Query: 198 TISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFN 246
++ ++ CA+++ + LG+ IH ++ +H+ +CG SVF+
Sbjct: 159 QVTFVTIVDVCAKLRLLDLGRKIHHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFS 218
Query: 247 QLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ 306
++ V++W ++I+ ++GQ + L + R + + VK N VT +S++ C L A+ +
Sbjct: 219 RMGQSSVLLWTTMIAGCSQNGQYEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKE 278
Query: 307 G-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
G + + + +LI +YG+CG + +++ + M +++V+WN M++
Sbjct: 279 GEMIDARILESPFCSSTLLATSLISLYGQCGILDRAKGLLEHMYQRDVVAWNAMVTA 335
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/350 (24%), Positives = 155/350 (44%), Gaps = 55/350 (15%)
Query: 26 LLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGK 85
LL +WT+M+ +Y G + + + M +GV+P+ + C++L+ +G+
Sbjct: 120 LLRDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGR 179
Query: 86 DVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRY 145
++ +I+ E ++ D ++ N+L+ Y C
Sbjct: 180 KIHHRIIN------------------------------EGLEPDGILGNALVHMYGSCGS 209
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
FS++ Q ++ W M+AG + G EE + +M++ ++ N ++ ++
Sbjct: 210 FDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLVFRKMDL--EGVKANEVTYMSMV 267
Query: 206 AACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVV 254
C + VK G+ I +L I L CG + + + + RDVV
Sbjct: 268 EVCRNLDAVKEGEMIDARILESPFCSSTLLATSLISLYGQCGILDRAKGLLEHMYQRDVV 327
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------- 307
WN++++A ++G +A+ LLR + + N VT +SVL AC L AL QG
Sbjct: 328 AWNAMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVLEACANLEALSQGREIHARV 387
Query: 308 -----LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
L V N++I MYG+CG + + +F MP K+ VSWN +I+
Sbjct: 388 LLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDVSWNAVINA 437
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 101/382 (26%), Positives = 174/382 (45%), Gaps = 45/382 (11%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKG 60
++LG ++H +I G+E LG+ L+ MY G ++++ ++F M
Sbjct: 175 LDLGRKIHHRIINEGLEPDGILGNALVH----------MYGSCGSFDDMKSVFSRMGQSS 224
Query: 61 VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDL-----FIKCGR 115
V + + CS+ Y G V+ M + N ++++ +K G
Sbjct: 225 V----LLWTTMIAGCSQNGQYEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEGE 280
Query: 116 MEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGG 175
M L L+ SLI Y +C L + + Q+D+V+WNAM+ A G
Sbjct: 281 MIDARILESPFCSSTLLATSLISLYGQCGILDRAKGLLEHMYQRDVVAWNAMVTACAQNG 340
Query: 176 FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL---------- 225
E +LL M+M N ++ VL ACA ++ + G+ IH VL
Sbjct: 341 DNWEAIHLLRRMDM--EGFGANKVTYLSVLEACANLEALSQGREIHARVLLCGLLQREVA 398
Query: 226 --RHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283
I + CG + SVF + +D V WN++I+A V + + DAL+L + +
Sbjct: 399 VGNSVITMYGKCGQTEAAMSVFEAMPRKDDVSWNAVINASVGNSKFQDALELFHGMELEG 458
Query: 284 VKPNTVTIVSVLPAC-----LKLA-------ALPQGLGTGSFVWNALIDMYGRCGAIQKS 331
++ N T++S+L AC LKLA A G + V N++++MY RCG++ +
Sbjct: 459 LRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGNSTAVGNSVVNMYARCGSLLDA 518
Query: 332 RKIFVLMPHKNLVSWNVMISVY 353
+K F + K LV+W+++++ Y
Sbjct: 519 KKAFDSLEEKGLVAWSIILAAY 540
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 151/347 (43%), Gaps = 57/347 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ G E ++L M +G + V +AC+ L+ G++++
Sbjct: 329 WNAMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVLEACANLEALSQGREIH---- 384
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
R LL CG ++ ++ V NS+I Y KC + +
Sbjct: 385 ----------ARVLL-----CGLLQ----------REVAVGNSVITMYGKCGQTEAAMSV 419
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + +KD VSWNA++ ++ L ME+ ++ N +L +L AC ++
Sbjct: 420 FEAMPRKDDVSWNAVINASVGNSKFQDALELFHGMEL--EGLRSNEFTLLSLLEACGGLE 477
Query: 213 GVKLGKAIHGY------------VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+KL + IH V +++ CG ++ + F+ L + +V W+ I+
Sbjct: 478 DLKLARQIHARAAAGGFGGNSTAVGNSVVNMYARCGSLLDAKKAFDSLEEKGLVAWSIIL 537
Query: 261 SAFVRS--GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------- 307
+A+ +S G A +++ +KP VT VS L AC +A L G
Sbjct: 538 AAYAQSKDGPGRRAFKFFQEMEAEGIKPGEVTFVSALDACAAMATLEHGRSMHRRAAASG 597
Query: 308 -LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ T + N +I+MYG+CG+ ++ +F MP K L+SWN +I Y
Sbjct: 598 FVETSLVLGNTIINMYGKCGSPSDAKLVFDQMPEKCLISWNSLIVAY 644
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 108/235 (45%), Gaps = 24/235 (10%)
Query: 139 FYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT 198
Y KC + + F I K++ SW M+A Y+ G E L M+ T +P+
Sbjct: 1 MYGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGT--RPDK 58
Query: 199 ISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQ 247
+ L ACA + G+ IH V L +I +S + C V C+ VF+
Sbjct: 59 VVFVIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDG 118
Query: 248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-- 305
+ RDVV W ++++ + ++G AL+ L + VKPN VT V+++ C KL L
Sbjct: 119 MLLRDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLG 178
Query: 306 ---------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+GL + NAL+ MYG CG+ + +F M +++ W MI+
Sbjct: 179 RKIHHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIA 233
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/349 (20%), Positives = 152/349 (43%), Gaps = 59/349 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ +++ + LF+ M +G+R + F + +AC L+D ++ + ++
Sbjct: 430 SWNAVINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARA 489
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F GN+ V NS+++ YA+C L +
Sbjct: 490 AAGGFGGNSTA-----------------------------VGNSVVNMYARCGSLLDAKK 520
Query: 152 KFSKIKQKDLVSWNAMLAGYALG--GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F +++K LV+W+ +LA YA G EME ++P ++ L ACA
Sbjct: 521 AFDSLEEKGLVAWSIILAAYAQSKDGPGRRAFKFFQEMEA--EGIKPGEVTFVSALDACA 578
Query: 210 QVKGVKLGKAIH------GYVLRHH------IHLSTACGFVICSCSVFNQLSTRDVVVWN 257
+ ++ G+++H G+V I++ CG + VF+Q+ + ++ WN
Sbjct: 579 AMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQMPEKCLISWN 638
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ----------- 306
S+I A+ +G ++AL L+++++ P++ T VS+L L +
Sbjct: 639 SLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSVSILYGLSHAGLLERGVEHFRSSIQD 698
Query: 307 -GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP--HKNLVSWNVMISV 352
GL S L+D+ R G + + ++ + P + ++W +++
Sbjct: 699 HGLEPSSGQLKCLVDLLARKGFLDAAEELILASPACQADTIAWMTLLAA 747
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 66/130 (50%), Gaps = 11/130 (8%)
Query: 235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV 294
C V + VF+ +S ++V W +++A+ ++G +AL+L + +P+ V V
Sbjct: 5 CARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVVFVIA 64
Query: 295 LPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
L AC L G L + + N+L++MYG+C + + K+F M +++
Sbjct: 65 LDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDV 124
Query: 344 VSWNVMISVY 353
VSW M++VY
Sbjct: 125 VSWTAMLAVY 134
>gi|255544888|ref|XP_002513505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547413|gb|EEF48908.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 474
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 162/347 (46%), Gaps = 59/347 (17%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD-YRVGKDVYDYM 91
W SM+ Y YYEE +LF M K R D + C+E D ++GK ++
Sbjct: 117 WNSMISAYIDYAYYEEANSLFSTMRTK-TREDERTIAVMLSLCAEAADGLKMGKSLHAL- 174
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
AC K G M D N+L+ YA + +
Sbjct: 175 --------AC----------KNG-----------MRMDNSTANALLRMYADLNCAESALK 205
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+++ D+VS+N ++ R E L M ++ + PN+ ++ +LA C
Sbjct: 206 VFNEMSDVDVVSYNTLILALCSSNLRGEAWELFGMMR--ESKVNPNSHTMISLLAVCGDE 263
Query: 212 KGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSII 260
+ +G++IHG+V++ I + +CG + +F RD+++WN++I
Sbjct: 264 TCLNIGRSIHGFVVKQGIETNLSWNTSLADMYISCGDETTAKYLFEICPDRDLILWNAMI 323
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------- 313
+AF++ + +AL L + +++ +PN+VTI++VL C LA LP G ++
Sbjct: 324 AAFLKKNKNGEAL-LFFNRMISEEEPNSVTIINVLSTCSDLANLPYGQCLHAYAARRYSP 382
Query: 314 ------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ NA I MY RCG++Q + KIF +P ++++SWN MI+ YG
Sbjct: 383 ISLNLSLANAFITMYARCGSMQNAEKIFKTLPKRDIISWNTMITGYG 429
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 150/327 (45%), Gaps = 56/327 (17%)
Query: 50 VNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDL 109
+ LF M+ G+ D V +A ++ ++G ++ I + + G DL
Sbjct: 33 LELFVHMVKDGIEFDMITILVVIQASADFGSLQLGMQIHQMAIKLSYVG---------DL 83
Query: 110 FIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLA 169
FI+ N+L++ YA+ LK++ F + +D+ WN+M++
Sbjct: 84 FIQ---------------------NALLNMYAENGSLKLACHLFDNVITRDVALWNSMIS 122
Query: 170 GYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ-VKGVKLGKAIHGYVLRHH 228
Y + EE +L M +T + + +++ +L+ CA+ G+K+GK++H ++
Sbjct: 123 AYIDYAYYEEANSLFSTM---RTKTREDERTIAVMLSLCAEAADGLKMGKSLHALACKNG 179
Query: 229 IHLSTACGFVI--------CSCS---VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLR 277
+ + + + C+ S VFN++S DVV +N++I A S +A +L
Sbjct: 180 MRMDNSTANALLRMYADLNCAESALKVFNEMSDVDVVSYNTLILALCSSNLRGEAWELFG 239
Query: 278 DVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----------WN-ALIDMYGRCG 326
+ + V PN+ T++S+L C L G FV WN +L DMY CG
Sbjct: 240 MMRESKVNPNSHTMISLLAVCGDETCLNIGRSIHGFVVKQGIETNLSWNTSLADMYISCG 299
Query: 327 AIQKSRKIFVLMPHKNLVSWNVMISVY 353
++ +F + P ++L+ WN MI+ +
Sbjct: 300 DETTAKYLFEICPDRDLILWNAMIAAF 326
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 113/264 (42%), Gaps = 46/264 (17%)
Query: 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL 107
E LF +M + V P+ + C + +G+ ++ +++ E N L
Sbjct: 233 EAWELFGMMRESKVNPNSHTMISLLAVCGDETCLNIGRSIHGFVVKQGIETNLSWNTSLA 292
Query: 108 DLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAM 167
D++I CG E T+ +YL F +DL+ WNAM
Sbjct: 293 DMYISCGD-ETTA-----------------------KYL------FEICPDRDLILWNAM 322
Query: 168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH 227
+A + E + M ++ +PN++++ VL+ C+ + + G+ +H Y R
Sbjct: 323 IAAFLKKNKNGEALLFFNRM---ISEEEPNSVTIINVLSTCSDLANLPYGQCLHAYAARR 379
Query: 228 H----IHLSTA---------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALD 274
+ ++LS A CG + + +F L RD++ WN++I+ + G DA+
Sbjct: 380 YSPISLNLSLANAFITMYARCGSMQNAEKIFKTLPKRDIISWNTMITGYGTHGSACDAIL 439
Query: 275 LLRDVIVANVKPNTVTIVSVLPAC 298
++ +PN VT +S+L AC
Sbjct: 440 AFMQMLEDGFRPNGVTFLSILSAC 463
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
N+ I YA+C ++ + F + ++D++SWN M+ GY G +L M+M++
Sbjct: 391 NAFITMYARCGSMQNAEKIFKTLPKRDIISWNTMITGYGTHG--SACDAILAFMQMLEDG 448
Query: 194 MQPNTISLSGVLAACAQVKGVKLG 217
+PN ++ +L+AC G LG
Sbjct: 449 FRPNGVTFLSILSACRHAGGTILG 472
>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/371 (26%), Positives = 166/371 (44%), Gaps = 85/371 (22%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
+ M+ +Y G +++ LF + + G+ PD F P V KA L+D R G+ V +++
Sbjct: 165 YNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIV 224
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
K G MD D V NSLID Y + ++ +
Sbjct: 225 -------------------KTG-----------MDLDNYVYNSLIDMYYELSNVENAKKL 254
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ +D VSWN M++GY E+ N EM+ + + +P+ ++ L+AC +K
Sbjct: 255 FDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQ-EGNEKPDEATVVSTLSACTALK 313
Query: 213 GVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLS------------ 249
++LG IH YV R + +T CG + + ++F+++S
Sbjct: 314 NLELGDEIHNYV-RKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMIS 372
Query: 250 -------------------TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
RDVV+W ++I+ +V+ DA+ L R++ + +KP+ T
Sbjct: 373 GYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFT 432
Query: 291 IVSVLPACLKLAALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMP 339
+V++L C +L AL QG + V ALI+MY +CG + KS +IF +
Sbjct: 433 VVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELE 492
Query: 340 HKNLVSWNVMI 350
K+ SW +I
Sbjct: 493 DKDTASWTSII 503
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 164/348 (47%), Gaps = 31/348 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W M+ Y +E+ +N F M +G +PD AC+ LK+ +G ++++Y
Sbjct: 265 SWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNY 324
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVS 149
+ + + LLD++ KCG + I +F+EM ++ + S+I Y C L+ +
Sbjct: 325 -VRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREA 383
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F K +D+V W AM+ GY ++ L EM++ + ++P+ ++ +L CA
Sbjct: 384 RDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQK--IKPDKFTVVTLLTGCA 441
Query: 210 QVKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNS 258
Q+ ++ GK IHGY+ + I + + CG V S +F +L +D W S
Sbjct: 442 QLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTS 501
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------- 307
II +G+ +AL L ++ KP+ +T + VL AC + +G
Sbjct: 502 IICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVH 561
Query: 308 -LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + +ID+ GR G + ++ ++ +P +N +++ +YG
Sbjct: 562 RIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENC---EIVVPLYG 606
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA--CLKL 301
+FN + + V+N ++ + + G + L L + + + P+ T VL A CL+
Sbjct: 153 IFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRD 212
Query: 302 AA---------LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+ G+ ++V+N+LIDMY ++ ++K+F M ++ VSWNVMIS
Sbjct: 213 VRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISG 272
Query: 353 Y 353
Y
Sbjct: 273 Y 273
>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 167/349 (47%), Gaps = 60/349 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
W +++ Y +E+ +++F +I +PD+F P V KAC+ L D +G
Sbjct: 174 QWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLG------ 227
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD--QDFLVNNSLIDFYAKCRYLKV 148
+I G+ +MD D V N+LI Y KC ++
Sbjct: 228 --------------------------QIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEE 261
Query: 149 SHCK-FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
+ + F + K + SWNA+L GYA + +L ++M + + P+ ++ +L A
Sbjct: 262 AVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLY--LQMTDSGLDPDWFTIGSLLLA 319
Query: 208 CAQVKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVW 256
C+++K + G+ IHG+ LR+ + L CG + +F+ + R +V W
Sbjct: 320 CSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSW 379
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG--------- 307
N +I+ + ++G +A++L R ++ ++P + I+ V AC +L+AL G
Sbjct: 380 NVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALK 439
Query: 308 --LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L FV +++IDMY + G I S++IF + K++ SWNV+I+ YG
Sbjct: 440 AHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYG 488
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 145/331 (43%), Gaps = 55/331 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ Y + ++L+ M D G+ PD F + ACS +K G++++ +
Sbjct: 277 SWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFA 336
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + + LL L+I CG+ LF+ M+
Sbjct: 337 LRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEH----------------------- 373
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+ LVSWN M+AGY+ G +E NL +M+ +QP I++ V AC+Q+
Sbjct: 374 -------RSLVSWNVMIAGYSQNGLPDEAINLF--RQMLSDGIQPYEIAIMCVCGACSQL 424
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++LGK +H + L+ H I + G + S +F++L +DV WN II
Sbjct: 425 SALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVII 484
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN---- 316
+ + G+ +AL+L ++ +KP+ T +L AC + GL + + N
Sbjct: 485 AGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNI 544
Query: 317 --------ALIDMYGRCGAIQKSRKIFVLMP 339
++DM GR G I + ++ MP
Sbjct: 545 EPKLEHYTCVVDMLGRAGRIDDALRLIEEMP 575
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/321 (23%), Positives = 141/321 (43%), Gaps = 60/321 (18%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLE--VFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKG 60
+GI + + I CG A + +E +W M+ Y+ G +E +NLF M+ G
Sbjct: 347 IGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDG 406
Query: 61 VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITS 120
++P V ACS+L R+GK+++ +
Sbjct: 407 IQPYEIAIMCVCGACSQLSALRLGKELHCF------------------------------ 436
Query: 121 GLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEV 180
L + +D V++S+ID YAK + +S F ++++KD+ SWN ++AGY + G +E
Sbjct: 437 ALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEA 496
Query: 181 TNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVIC 240
L + +M++ ++P+ + +G+L AC+ V+ G +L H ++ C
Sbjct: 497 LELFE--KMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLH-NIEPKLEHYTC 553
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
++ R+G++ DAL L+ ++ P++ S+L +C
Sbjct: 554 ------------------VVDMLGRAGRIDDALRLIEEM---PGDPDSRIWSSLLSSC-- 590
Query: 301 LAALPQGLGTGSFVWNALIDM 321
+ LG G V N L+++
Sbjct: 591 --RIHGNLGLGEKVANKLLEL 609
>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
Length = 863
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 101/397 (25%), Positives = 173/397 (43%), Gaps = 75/397 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSM-------MGMYN------------ 41
+ G Q+HAH I +G+ +++V+ S+ G+ N
Sbjct: 266 LNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVG 325
Query: 42 --VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
G E + LF MI +R D V+ AC+E K Y G+ V+
Sbjct: 326 LVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVH----------- 374
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
C L IK G D D VNN+++D Y KC+ L ++ F +KQK
Sbjct: 375 -C-------LAIKSG-----------FDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQK 415
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D VSWNA++A G ++ +L EM++ M+P+ + VL ACA ++ ++ G
Sbjct: 416 DSVSWNAIIAALEQNGHYDDT--ILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLM 473
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H V++ + + CG + + + +++ + VV WN+I+S F + +
Sbjct: 474 VHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKE 533
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNA 317
+A +++ +KP+ T +VL C LA + Q + ++ +
Sbjct: 534 SEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISST 593
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L+DMY +CG + S +F + ++ VSWN MI Y
Sbjct: 594 LVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYA 630
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 153/345 (44%), Gaps = 56/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ G+Y++ + F M+ G++PD F V KAC+ L+ G V+D +
Sbjct: 419 SWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKV 478
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I SGL D V ++++D Y KC + +
Sbjct: 479 IK--------------------------SGL----GSDAFVASTVVDMYCKCGIIDEAQK 508
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+I + +VSWNA+L+G++L EE EM + ++P+ + + VL CA +
Sbjct: 509 LHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEM--LDMGLKPDHFTFATVLDTCANL 566
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++LGK IHG +++ + + CG + S VF ++ RD V WN++I
Sbjct: 567 ATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMI 626
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----LGTGSFV- 314
+ G V+AL + + NV PN T V+VL AC + G L T +
Sbjct: 627 CGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKL 686
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ ++D+ GR Q++ K MP + V W ++S+
Sbjct: 687 EPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSI 731
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 151/343 (44%), Gaps = 54/343 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ Y G ++E V+LF M +GV PD + K+CS L++ +G V+
Sbjct: 116 SWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVH--- 172
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
L +K G +EI D ++L+D Y KCR L + C
Sbjct: 173 ----------------ALAVKTG-LEI----------DVRTGSALVDMYGKCRSLDDALC 205
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +++ VSW A +AG + V L +EM + + + S + +CA +
Sbjct: 206 FFYGMPERNWVSWGAAIAGCVQN--EQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAM 263
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSC-----------SVFNQLSTRDVVVWNSII 260
+ G+ +H + +++ G I F L V N+++
Sbjct: 264 SCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMM 323
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLG 309
VR+G ++A+ L + +I ++++ + V++ V AC + A+ G
Sbjct: 324 VGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFD 383
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
V NA++D+YG+C A+ ++ IF M K+ VSWN +I+
Sbjct: 384 VDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAA 426
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 105/232 (45%), Gaps = 53/232 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G+ VH +I G+ AF+ S +++++C +W +++
Sbjct: 468 LEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSG 527
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+++ EE F M+D G++PDHF V C+ L +GK ++ +I
Sbjct: 528 FSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIK------ 581
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+EM D ++++L+D YAKC + S F K++++
Sbjct: 582 ------------------------QEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKR 617
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
D VSWNAM+ GYAL G E + + M+ + ++ PN + VL AC+ V
Sbjct: 618 DFVSWNAMICGYALHGLGVEALRMFERMQ--KENVVPNHATFVAVLRACSHV 667
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/315 (19%), Positives = 139/315 (44%), Gaps = 27/315 (8%)
Query: 61 VRPDHFVCPKVYKACSEL--KDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEI 118
V P +V+++C++ + G+ + M+ F A V LL ++ +C
Sbjct: 11 VAPARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPTAFVSNCLLQMYARCAGAAC 70
Query: 119 TSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFR 177
+F+ M + D + N+++ Y+ + + F + D+VSWNA+++GY G
Sbjct: 71 ARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMF 130
Query: 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGF 237
+E +L +EM + + P+ + + +L +C+ ++ + LG +H ++ + + G
Sbjct: 131 QESVDLF--VEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGS 188
Query: 238 VIC-----------SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286
+ + F + R+ V W + I+ V++ Q V L+L ++ +
Sbjct: 189 ALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGV 248
Query: 287 NTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIF 335
+ + S +C ++ L G + V A++D+Y + ++ +R+ F
Sbjct: 249 SQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAF 308
Query: 336 VLMPHKNLVSWNVMI 350
+P+ + + N M+
Sbjct: 309 FGLPNHTVETSNAMM 323
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 11/127 (8%)
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
G + + ++F+ + DVV WN+++S + + G +++DL ++ V P+ T +L
Sbjct: 97 GDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLL 156
Query: 296 PACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLV 344
+C L A+ GL +AL+DMYG+C ++ + F MP +N V
Sbjct: 157 KSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWV 216
Query: 345 SWNVMIS 351
SW I+
Sbjct: 217 SWGAAIA 223
>gi|449447755|ref|XP_004141633.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
chloroplastic-like [Cucumis sativus]
Length = 696
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/394 (21%), Positives = 176/394 (44%), Gaps = 74/394 (18%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G++ H LI G+ + LG+ L++++ W S++ +
Sbjct: 236 GLKAHGLLIKNGLIGSSLLGTTLVDMYFKCGKIKLARQMFGEITERDVVVWGSIIAGFAH 295
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
E + MID G+RP+ + + E+ R+G++V+ Y+I K
Sbjct: 296 NRLQREALEYTRRMIDDGIRPNSVILTTILPVIGEIWARRLGQEVHAYVIKTK------- 348
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+ + ++LID Y KC + F +++ +
Sbjct: 349 ----------------------SYSKQIFIQSALIDMYCKCGDIGSGRAVFYASMERNAI 386
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
W A+++GYAL G E+ + M+ Q +P+ ++++ +L CAQ++ ++ GK IH
Sbjct: 387 CWTALMSGYALNGRLEQAVRSVIWMQ--QEGFRPDIVTVATILPVCAQLRALRPGKEIHA 444
Query: 223 YVLRH-----------HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
Y +++ + + + CG + + +FN + R+V++W ++I +++ + +
Sbjct: 445 YAMKNCFLPNVSIVSSLMVMYSKCGVMDYTLKLFNGMEQRNVILWTAMIDSYIENQCPHE 504
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALID 320
A+D+ R + ++ +P+TVT+ +L C + L G FV L+
Sbjct: 505 AIDIFRAMQLSKHRPDTVTMSRILYICSEQKMLKMGKEIHGQVLKRKFEPVHFVSAELVK 564
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+YG+CGA++ ++ +F +P K ++W +I YG
Sbjct: 565 LYGKCGAVKMAKMVFEAIPVKGPMTWTAIIEAYG 598
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/377 (23%), Positives = 161/377 (42%), Gaps = 77/377 (20%)
Query: 2 ELGIQVHAHLI-VCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
LG +VHA++I F+ S L++++C WT++M
Sbjct: 335 RLGQEVHAYVIKTKSYSKQIFIQSALIDMYCKCGDIGSGRAVFYASMERNAICWTALMSG 394
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y + G E+ V M +G RPD + C++L+ R GK+++ Y + F N
Sbjct: 395 YALNGRLEQAVRSVIWMQQEGFRPDIVTVATILPVCAQLRALRPGKEIHAYAMKNCFLPN 454
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ L+ ++ KCG M+ T LF M+ Q+
Sbjct: 455 VSIVSSLMVMYSKCGVMDYTLKLFNGME------------------------------QR 484
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+++ W AM+ Y E ++ M++ + +P+T+++S +L C++ K +K+GK
Sbjct: 485 NVILWTAMIDSYIENQCPHEAIDIFRAMQL--SKHRPDTVTMSRILYICSEQKMLKMGKE 542
Query: 220 IHGYVLRHH---IHLSTA--------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IHG VL+ +H +A CG V + VF + + + W +II A+ SG+
Sbjct: 543 IHGQVLKRKFEPVHFVSAELVKLYGKCGAVKMAKMVFEAIPVKGPMTWTAIIEAYGESGE 602
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPAC------------LKLAALPQGLGTGSFVWN 316
+A+DL + + PN T VL C KL ++ + ++
Sbjct: 603 FQEAIDLFDRMRSRGISPNHFTFKVVLSICKEAGFVDEALRIFKLMSVRYKIKPSEEHYS 662
Query: 317 ALIDMYGRCGAIQKSRK 333
+I + R G ++++R+
Sbjct: 663 LVIAILTRFGRLEEARR 679
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/399 (20%), Positives = 173/399 (43%), Gaps = 78/399 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
M Q+HAH+ + G+E F+ ++L+ ++ W +++
Sbjct: 130 MTYAKQIHAHIRINGLENNEFIRTRLVHMYTACGSLEEAQKLFDESSSKSVYPWNALLRG 189
Query: 40 YNVLGY--YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
+ G Y I++ + M GV + + + K+ + + G + +I
Sbjct: 190 TVMAGRRDYRSILSTYAEMRRLGVELNVYSFANIIKSFAGASAFTQGLKAHGLLIKNGLI 249
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
G++ + L+D++ KCG++++ +F E I
Sbjct: 250 GSSLLGTTLVDMYFKCGKIKLARQMFGE------------------------------IT 279
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
++D+V W +++AG+A + E L MI ++PN++ L+ +L ++ +LG
Sbjct: 280 ERDVVVWGSIIAGFAHNRLQREA--LEYTRRMIDDGIRPNSVILTTILPVIGEIWARRLG 337
Query: 218 KAIHGYVLR-----HHIHLSTACGFVICSC-------SVFNQLSTRDVVVWNSIISAFVR 265
+ +H YV++ I + +A + C C +VF R+ + W +++S +
Sbjct: 338 QEVHAYVIKTKSYSKQIFIQSALIDMYCKCGDIGSGRAVFYASMERNAICWTALMSGYAL 397
Query: 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------V 314
+G++ A+ + + +P+ VT+ ++LP C +L AL G ++ +
Sbjct: 398 NGRLEQAVRSVIWMQQEGFRPDIVTVATILPVCAQLRALRPGKEIHAYAMKNCFLPNVSI 457
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
++L+ MY +CG + + K+F M +N++ W MI Y
Sbjct: 458 VSSLMVMYSKCGVMDYTLKLFNGMEQRNVILWTAMIDSY 496
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 119/252 (47%), Gaps = 23/252 (9%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
++ + + L+ Y C L+ + F + K + WNA+L G + G R+ + L
Sbjct: 145 LENNEFIRTRLVHMYTACGSLEEAQKLFDESSSKSVYPWNALLRGTVMAGRRDYRSILST 204
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-----------A 234
EM + ++ N S + ++ + A G HG ++++ + S+
Sbjct: 205 YAEMRRLGVELNVYSFANIIKSFAGASAFTQGLKAHGLLIKNGLIGSSLLGTTLVDMYFK 264
Query: 235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV 294
CG + + +F +++ RDVVVW SII+ F + +AL+ R +I ++PN+V + ++
Sbjct: 265 CGKIKLARQMFGEITERDVVVWGSIIAGFAHNRLQREALEYTRRMIDDGIRPNSVILTTI 324
Query: 295 LPACLKLAALPQG-------LGTGS-----FVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
LP ++ A G + T S F+ +ALIDMY +CG I R +F +N
Sbjct: 325 LPVIGEIWARRLGQEVHAYVIKTKSYSKQIFIQSALIDMYCKCGDIGSGRAVFYASMERN 384
Query: 343 LVSWNVMISVYG 354
+ W ++S Y
Sbjct: 385 AICWTALMSGYA 396
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 95/201 (47%), Gaps = 26/201 (12%)
Query: 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----------LRH 227
+E ++D ++ Q + N + S ++ AC + K + K IH ++ +R
Sbjct: 96 KEALTIMDYVD--QQGIPVNATTFSSLITACVRTKSMTYAKQIHAHIRINGLENNEFIRT 153
Query: 228 H-IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ--VVDALDLLRDVIVANV 284
+H+ TACG + + +F++ S++ V WN+++ V +G+ L ++ V
Sbjct: 154 RLVHMYTACGSLEEAQKLFDESSSKSVYPWNALLRGTVMAGRRDYRSILSTYAEMRRLGV 213
Query: 285 KPNTVTIVSVLPACLKLAALPQGLGT-----------GSFVWNALIDMYGRCGAIQKSRK 333
+ N + +++ + +A QGL S + L+DMY +CG I+ +R+
Sbjct: 214 ELNVYSFANIIKSFAGASAFTQGLKAHGLLIKNGLIGSSLLGTTLVDMYFKCGKIKLARQ 273
Query: 334 IFVLMPHKNLVSWNVMISVYG 354
+F + +++V W +I+ +
Sbjct: 274 MFGEITERDVVVWGSIIAGFA 294
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGL 308
+ F R ++ +AL ++ V + N T S++ AC++ ++ GL
Sbjct: 86 VQRFARQNKLKEALTIMDYVDQQGIPVNATTFSSLITACVRTKSMTYAKQIHAHIRINGL 145
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
F+ L+ MY CG++++++K+F K++ WN ++
Sbjct: 146 ENNEFIRTRLVHMYTACGSLEEAQKLFDESSSKSVYPWNALL 187
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 44/98 (44%), Gaps = 21/98 (21%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
+++G ++H ++ E F+ ++L++++ WT+++
Sbjct: 537 LKMGKEIHGQVLKRKFEPVHFVSAELVKLYGKCGAVKMAKMVFEAIPVKGPMTWTAIIEA 596
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSE 77
Y G ++E ++LF M +G+ P+HF V C E
Sbjct: 597 YGESGEFQEAIDLFDRMRSRGISPNHFTFKVVLSICKE 634
>gi|449482323|ref|XP_004156247.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
chloroplastic-like [Cucumis sativus]
Length = 716
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/394 (21%), Positives = 176/394 (44%), Gaps = 74/394 (18%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G++ H LI G+ + LG+ L++++ W S++ +
Sbjct: 236 GLKAHGLLIKNGLIGSSLLGTTLVDMYFKCGKIKLARQMFGEITERDVVVWGSIIAGFAH 295
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
E + MID G+RP+ + + E+ R+G++V+ Y+I K
Sbjct: 296 NRLQREALEYTRRMIDDGIRPNSVILTTILPVIGEIWARRLGQEVHAYVIKTK------- 348
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+ + ++LID Y KC + F +++ +
Sbjct: 349 ----------------------SYSKQIFIQSALIDMYCKCGDIGSGRAVFYASMERNAI 386
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
W A+++GYAL G E+ + M+ Q +P+ ++++ +L CAQ++ ++ GK IH
Sbjct: 387 CWTALMSGYALNGRLEQAVRSVIWMQ--QEGFRPDIVTVATILPVCAQLRALRPGKEIHA 444
Query: 223 YVLRH-----------HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
Y +++ + + + CG + + +FN + R+V++W ++I +++ + +
Sbjct: 445 YAMKNCFLPNVSIVSSLMVMYSKCGVMDYTLKLFNGMEQRNVILWTAMIDSYIENQCPHE 504
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALID 320
A+D+ R + ++ +P+TVT+ +L C + L G FV L+
Sbjct: 505 AIDIFRAMQLSKHRPDTVTMSRILYICSEQKMLKMGKEIHGQVLKRKFEPVHFVSAELVK 564
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+YG+CGA++ ++ +F +P K ++W +I YG
Sbjct: 565 LYGKCGAVKMAKMVFEAIPVKGPMTWTAIIEAYG 598
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/377 (23%), Positives = 161/377 (42%), Gaps = 77/377 (20%)
Query: 2 ELGIQVHAHLI-VCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
LG +VHA++I F+ S L++++C WT++M
Sbjct: 335 RLGQEVHAYVIKTKSYSKQIFIQSALIDMYCKCGDIGSGRAVFYASMERNAICWTALMSG 394
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y + G E+ V M +G RPD + C++L+ R GK+++ Y + F N
Sbjct: 395 YALNGRLEQAVRSVIWMQQEGFRPDIVTVATILPVCAQLRALRPGKEIHAYAMKNCFLPN 454
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ L+ ++ KCG M+ T LF M+ Q+
Sbjct: 455 VSIVSSLMVMYSKCGVMDYTLKLFNGME------------------------------QR 484
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+++ W AM+ Y E ++ M++ + +P+T+++S +L C++ K +K+GK
Sbjct: 485 NVILWTAMIDSYIENQCPHEAIDIFRAMQL--SKHRPDTVTMSRILYICSEQKMLKMGKE 542
Query: 220 IHGYVLRHH---IHLSTA--------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IHG VL+ +H +A CG V + VF + + + W +II A+ SG+
Sbjct: 543 IHGQVLKRKFEPVHFVSAELVKLYGKCGAVKMAKMVFEAIPVKGPMTWTAIIEAYGESGE 602
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPAC------------LKLAALPQGLGTGSFVWN 316
+A+DL + + PN T VL C KL ++ + ++
Sbjct: 603 FQEAIDLFDRMRSRGISPNHFTFKVVLSICKEAGFVDEALRIFKLMSVRYKIKPSEEHYS 662
Query: 317 ALIDMYGRCGAIQKSRK 333
+I + R G ++++R+
Sbjct: 663 LVIAILTRFGRLEEARR 679
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/399 (20%), Positives = 173/399 (43%), Gaps = 78/399 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
M Q+HAH+ + G+E F+ ++L+ ++ W +++
Sbjct: 130 MTYAKQIHAHIRINGLENNEFIRTRLVHMYTACGSLEEAQKLFDESSSKSVYPWNALLRG 189
Query: 40 YNVLGY--YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
+ G Y I++ + M GV + + + K+ + + G + +I
Sbjct: 190 TVMAGRRDYRSILSTYAEMRRLGVELNVYSFANIIKSFAGASAFTQGLKAHGLLIKNGLI 249
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
G++ + L+D++ KCG++++ +F E I
Sbjct: 250 GSSLLGTTLVDMYFKCGKIKLARQMFGE------------------------------IT 279
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
++D+V W +++AG+A + E L MI ++PN++ L+ +L ++ +LG
Sbjct: 280 ERDVVVWGSIIAGFAHNRLQREA--LEYTRRMIDDGIRPNSVILTTILPVIGEIWARRLG 337
Query: 218 KAIHGYVLR-----HHIHLSTACGFVICSC-------SVFNQLSTRDVVVWNSIISAFVR 265
+ +H YV++ I + +A + C C +VF R+ + W +++S +
Sbjct: 338 QEVHAYVIKTKSYSKQIFIQSALIDMYCKCGDIGSGRAVFYASMERNAICWTALMSGYAL 397
Query: 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------V 314
+G++ A+ + + +P+ VT+ ++LP C +L AL G ++ +
Sbjct: 398 NGRLEQAVRSVIWMQQEGFRPDIVTVATILPVCAQLRALRPGKEIHAYAMKNCFLPNVSI 457
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
++L+ MY +CG + + K+F M +N++ W MI Y
Sbjct: 458 VSSLMVMYSKCGVMDYTLKLFNGMEQRNVILWTAMIDSY 496
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 119/252 (47%), Gaps = 23/252 (9%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
++ + + L+ Y C L+ + F + K + WNA+L G + G R+ + L
Sbjct: 145 LENNEFIRTRLVHMYTACGSLEEAQKLFDESSSKSVYPWNALLRGTVMAGRRDYRSILST 204
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-----------A 234
EM + ++ N S + ++ + A G HG ++++ + S+
Sbjct: 205 YAEMRRLGVELNVYSFANIIKSFAGASAFTQGLKAHGLLIKNGLIGSSLLGTTLVDMYFK 264
Query: 235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV 294
CG + + +F +++ RDVVVW SII+ F + +AL+ R +I ++PN+V + ++
Sbjct: 265 CGKIKLARQMFGEITERDVVVWGSIIAGFAHNRLQREALEYTRRMIDDGIRPNSVILTTI 324
Query: 295 LPACLKLAALPQG-------LGTGS-----FVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
LP ++ A G + T S F+ +ALIDMY +CG I R +F +N
Sbjct: 325 LPVIGEIWARRLGQEVHAYVIKTKSYSKQIFIQSALIDMYCKCGDIGSGRAVFYASMERN 384
Query: 343 LVSWNVMISVYG 354
+ W ++S Y
Sbjct: 385 AICWTALMSGYA 396
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 95/201 (47%), Gaps = 26/201 (12%)
Query: 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----------LRH 227
+E ++D ++ Q + N + S ++ AC + K + K IH ++ +R
Sbjct: 96 KEALTIMDYVD--QQGIPVNATTFSSLITACVRTKSMTYAKQIHAHIRINGLENNEFIRT 153
Query: 228 H-IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ--VVDALDLLRDVIVANV 284
+H+ TACG + + +F++ S++ V WN+++ V +G+ L ++ V
Sbjct: 154 RLVHMYTACGSLEEAQKLFDESSSKSVYPWNALLRGTVMAGRRDYRSILSTYAEMRRLGV 213
Query: 285 KPNTVTIVSVLPACLKLAALPQGLGT-----------GSFVWNALIDMYGRCGAIQKSRK 333
+ N + +++ + +A QGL S + L+DMY +CG I+ +R+
Sbjct: 214 ELNVYSFANIIKSFAGASAFTQGLKAHGLLIKNGLIGSSLLGTTLVDMYFKCGKIKLARQ 273
Query: 334 IFVLMPHKNLVSWNVMISVYG 354
+F + +++V W +I+ +
Sbjct: 274 MFGEITERDVVVWGSIIAGFA 294
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGL 308
+ F R ++ +AL ++ V + N T S++ AC++ ++ GL
Sbjct: 86 VQRFARQNKLKEALTIMDYVDQQGIPVNATTFSSLITACVRTKSMTYAKQIHAHIRINGL 145
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
F+ L+ MY CG++++++K+F K++ WN ++
Sbjct: 146 ENNEFIRTRLVHMYTACGSLEEAQKLFDESSSKSVYPWNALL 187
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 44/98 (44%), Gaps = 21/98 (21%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
+++G ++H ++ E F+ ++L++++ WT+++
Sbjct: 537 LKMGKEIHGQVLKRKFEPVHFVSAELVKLYGKCGAVKMAKMVFEAIPVKGPMTWTAIIEA 596
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSE 77
Y G ++E ++LF M +G+ P+HF V C E
Sbjct: 597 YGESGEFQEAIDLFDRMRSRGISPNHFTFKVVLSICKE 634
>gi|255542118|ref|XP_002512123.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549303|gb|EEF50792.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 456
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 102/363 (28%), Positives = 157/363 (43%), Gaps = 65/363 (17%)
Query: 19 CAFLGSQLLEVFCNWTSMMGMYNVLGYYE-----EIVNLFYLMIDKGVRPDHFVCPKVYK 73
CAF L +WTSM ++GY + E + LF M + + + F +
Sbjct: 59 CAF-DENLDRNVVSWTSM-----IVGYVQNDCPVEGLILFNRMREGLIEGNQFTLGILVT 112
Query: 74 ACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN 133
AC++L GK + Y I + N+ + LLD+
Sbjct: 113 ACTKLGALHQGKCFHGYAIKSGVQLNSYLMTALLDM------------------------ 148
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
Y KC ++ + F ++ DLVSW AM+ GY + L ++
Sbjct: 149 ------YVKCGVIRDARSVFDELSSIDLVSWTAMIVGYTQSNLSYDALKLF--LDKKWAG 200
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----------HHIHLSTACGFVICSCS 243
+ PN +++ LAACA++ + LG++IHG ++ +H+ C +
Sbjct: 201 ILPNDVTIVSALAACARMGNLNLGRSIHGLAIKLGFAEPTLMNALVHMYAKCHMNRDASY 260
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
+F S +DVV WNSIIS + G +ALDL + + +V P+ VT+VSV AC L A
Sbjct: 261 LFETASEKDVVSWNSIISGCSQMGSPYEALDLFQRMRKESVSPDAVTLVSVFSACASLGA 320
Query: 304 LPQG------------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
L G L + +V AL+ Y +CG +R IF M KN V+W+ MI
Sbjct: 321 LQVGSSLHAYSVKEGLLSSNVYVSTALLTFYAKCGDAGSARTIFDGMQEKNTVTWSAMIG 380
Query: 352 VYG 354
YG
Sbjct: 381 GYG 383
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 122/244 (50%), Gaps = 23/244 (9%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D V L DFYAKC ++ S C F + +++VSW +M+ GY E L + M
Sbjct: 37 DSFVLTGLTDFYAKCGEIECSRCAFDENLDRNVVSWTSMIVGYVQNDCPVEGLILFNRMR 96
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-----------ACGF 237
+ ++ N +L ++ AC ++ + GK HGY ++ + L++ CG
Sbjct: 97 --EGLIEGNQFTLGILVTACTKLGALHQGKCFHGYAIKSGVQLNSYLMTALLDMYVKCGV 154
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ + SVF++LS+ D+V W ++I + +S DAL L D A + PN VTIVS L A
Sbjct: 155 IRDARSVFDELSSIDLVSWTAMIVGYTQSNLSYDALKLFLDKKWAGILPNDVTIVSALAA 214
Query: 298 CLKLAALPQG---------LGTGS-FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
C ++ L G LG + NAL+ MY +C + + +F K++VSWN
Sbjct: 215 CARMGNLNLGRSIHGLAIKLGFAEPTLMNALVHMYAKCHMNRDASYLFETASEKDVVSWN 274
Query: 348 VMIS 351
+IS
Sbjct: 275 SIIS 278
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/354 (23%), Positives = 155/354 (43%), Gaps = 87/354 (24%)
Query: 8 HAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNVLGYY 46
H + I GV+L ++L + LL+++ +WT+M ++GY
Sbjct: 127 HGYAIKSGVQLNSYLMTALLDMYVKCGVIRDARSVFDELSSIDLVSWTAM-----IVGYT 181
Query: 47 EEIVNLFY----LMIDK---GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ NL Y L +DK G+ P+ AC+ + + +G+ ++
Sbjct: 182 QS--NLSYDALKLFLDKKWAGILPNDVTIVSALAACARMGNLNLGRSIHG---------- 229
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
L IK G E T + N+L+ YAKC + + F +K
Sbjct: 230 ---------LAIKLGFAEPT------------LMNALVHMYAKCHMNRDASYLFETASEK 268
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSWN++++G + G E +L M + + P+ ++L V +ACA + +++G +
Sbjct: 269 DVVSWNSIISGCSQMGSPYEALDLFQRMR--KESVSPDAVTLVSVFSACASLGALQVGSS 326
Query: 220 IHGY-----VLRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
+H Y +L ++++STA CG + ++F+ + ++ V W+++I + G
Sbjct: 327 LHAYSVKEGLLSSNVYVSTALLTFYAKCGDAGSARTIFDGMQEKNTVTWSAMIGGYGVQG 386
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDM 321
+L + D++ +KPN V ++L AC + +G WN I M
Sbjct: 387 DAGGSLSIFNDMLRQELKPNEVIFTTILSACSHTGMVGEG-------WNLFISM 433
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 83/170 (48%), Gaps = 21/170 (12%)
Query: 205 LAACAQVKGVKLGKAIH----------GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVV 254
+ AC++++ + G+ +H +VL CG + CS F++ R+VV
Sbjct: 11 IRACSELRDIDEGRKLHCQIIKAGPPDSFVLTGLTDFYAKCGEIECSRCAFDENLDRNVV 70
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------- 307
W S+I +V++ V+ L L + ++ N T+ ++ AC KL AL QG
Sbjct: 71 SWTSMIVGYVQNDCPVEGLILFNRMREGLIEGNQFTLGILVTACTKLGALHQGKCFHGYA 130
Query: 308 ----LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ S++ AL+DMY +CG I+ +R +F + +LVSW MI Y
Sbjct: 131 IKSGVQLNSYLMTALLDMYVKCGVIRDARSVFDELSSIDLVSWTAMIVGY 180
>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
Length = 960
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 156/346 (45%), Gaps = 56/346 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+G Y G + L++ M +GV P + KAC++L+D R G +++ ++
Sbjct: 150 WNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLV 209
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ + F+VN +L+ YAK L +
Sbjct: 210 KLGYHSTG-----------------------------FIVN-ALVSMYAKNDDLSAARRL 239
Query: 153 FSKIKQK-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++K D V WN++L+ Y+ G E L EM M T PN+ ++ L AC
Sbjct: 240 FDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHM--TGPAPNSYTIVSALTACDGF 297
Query: 212 KGVKLGKAIHGYVLRHHIHLS------------TACGFVICSCSVFNQLSTRDVVVWNSI 259
KLGK IH VL+ H S T CG + + + Q++ DVV WNS+
Sbjct: 298 SYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSL 357
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----W 315
I +V++ +AL+ D+I A K + V++ S++ A +L+ L G+ ++V W
Sbjct: 358 IKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGW 417
Query: 316 -------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
N LIDMY +C + F+ M K+L+SW +I+ Y
Sbjct: 418 DSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYA 463
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/341 (20%), Positives = 147/341 (43%), Gaps = 54/341 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ Y+ G E + LF M G P+ + AC ++GK+++ ++
Sbjct: 252 WNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVL 311
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ + V N+LI Y +C + +
Sbjct: 312 KSSTHSS-----------------------------ELYVCNALIAMYTRCGKMPQAERI 342
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
++ D+V+WN+++ GY +E +MI + + +S++ ++AA ++
Sbjct: 343 LRQMNNADVVTWNSLIKGYVQNLMYKEALEFFS--DMIAAGHKSDEVSMTSIIAASGRLS 400
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ G +H YV++H I + + C F ++ +D++ W ++I+
Sbjct: 401 NLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIA 460
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLGT 310
+ ++ V+AL+L RDV ++ + + + S+L A L + L +GL
Sbjct: 461 GYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL-L 519
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ + N L+D+YG+C + + ++F + K++VSW MIS
Sbjct: 520 DTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMIS 560
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 121/258 (46%), Gaps = 33/258 (12%)
Query: 123 FEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTN 182
F + DFL L+ Y KC L + F ++ + +WN M+ Y G E +
Sbjct: 110 FPSFELDFLAGK-LVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNG--EPASA 166
Query: 183 LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVI--- 239
L M + S +L ACA+++ ++ G +H +++ H + GF++
Sbjct: 167 LALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYH---STGFIVNAL 223
Query: 240 -----------CSCSVFNQLSTR-DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
+ +F+ + D V+WNSI+S++ SG+ ++ L+L R++ + PN
Sbjct: 224 VSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPN 283
Query: 288 TVTIVSVLPAC--LKLAALPQGL----------GTGSFVWNALIDMYGRCGAIQKSRKIF 335
+ TIVS L AC A L + + + +V NALI MY RCG + ++ +I
Sbjct: 284 SYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERIL 343
Query: 336 VLMPHKNLVSWNVMISVY 353
M + ++V+WN +I Y
Sbjct: 344 RQMNNADVVTWNSLIKGY 361
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 150/344 (43%), Gaps = 53/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W S++ Y Y+E + F MI G + D + A L + G +++ Y+
Sbjct: 353 TWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYV 412
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I ++ N V L+D++ KC L M + FL
Sbjct: 413 IKHGWDSNLQVGNTLIDMYSKC-------NLTCYMGRAFL-------------------- 445
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
++ KDL+SW ++AGYA E L ++ + M+ + + L +L A + +
Sbjct: 446 ---RMHDKDLISWTTVIAGYAQNDCHVEALELF--RDVAKKRMEIDEMILGSILRASSVL 500
Query: 212 KGVKLGKAIHGYVLRHH----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
K + + K IH ++LR + + C + + VF + +DVV W S+IS
Sbjct: 501 KSMLIVKEIHCHILRKGLLDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMIS 560
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN----- 316
+ +G +A++L R ++ + ++V ++ +L A L+AL +G ++
Sbjct: 561 SSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCL 620
Query: 317 ------ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
A++DMY CG +Q ++ +F + K L+ + MI+ YG
Sbjct: 621 EGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYG 664
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/338 (23%), Positives = 158/338 (46%), Gaps = 65/338 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF--CNWTSMMG-----MYN---------VLGYYE 47
G+++HA++I G + +G+ L++++ CN T MG M++ + GY +
Sbjct: 405 GMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQ 464
Query: 48 -----EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
E + LF + K + D + + +A S LK + K+++ +++
Sbjct: 465 NDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHIL---------- 514
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
++ LLD I+ N L+D Y KCR + + F IK KD+V
Sbjct: 515 RKGLLDTVIQ---------------------NELVDVYGKCRNMGYATRVFESIKGKDVV 553
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW +M++ AL G E L M++T + ++++L +L+A A + + G+ IH
Sbjct: 554 SWTSMISSSALNGNESEAVELF--RRMVETGLSADSVALLCILSAAASLSALNKGREIHC 611
Query: 223 YVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
Y+LR + + CG + + +VF+++ + ++ + S+I+A+ G
Sbjct: 612 YLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKA 671
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG 309
A++L + NV P+ ++ +++L AC L +G G
Sbjct: 672 AVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRG 709
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 24/174 (13%)
Query: 204 VLAACAQVKGVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTR 251
VL C + + V G+ +H + + + + CG + + VF+++ R
Sbjct: 86 VLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDR 145
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---- 307
WN++I A+V +G+ AL L ++ V V + ++L AC KL + G
Sbjct: 146 TAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELH 205
Query: 308 -----LGTGS--FVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISVY 353
LG S F+ NAL+ MY + + +R++F K + V WN ++S Y
Sbjct: 206 SLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSY 259
>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g33680-like [Cucumis sativus]
Length = 710
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 106/391 (27%), Positives = 170/391 (43%), Gaps = 75/391 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G+Q HA I F+GS L+ ++C +W +++ Y +
Sbjct: 132 GLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAM 191
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
E LF LM + D F+ V A + GK ++ C
Sbjct: 192 ERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIH------------C- 238
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L +K G + I S V N+L+ Y KC L + F KD +
Sbjct: 239 ------LALKNGLLSIAS-----------VGNALVTMYGKCGCLDDALKTFELSGDKDDI 281
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+W+AM+ GYA G E NL M + +P+ + GV+ AC+ + ++ GK IHG
Sbjct: 282 TWSAMITGYAQAGDSHEALNLFYNMHL--NGNKPSEFTFVGVINACSDIGALEEGKQIHG 339
Query: 223 YVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
Y L+ I+ TA CG ++ + F+ L D+V+W S+IS + ++G+
Sbjct: 340 YSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENET 399
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALID 320
AL L + + + P+ +T+ SVL AC LAAL Q G + +AL
Sbjct: 400 ALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALST 459
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
MY +CG+++ +F MP +++++WN MIS
Sbjct: 460 MYAKCGSLEDGNLVFRRMPSRDIMTWNAMIS 490
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 135/287 (47%), Gaps = 43/287 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W++M+ Y G E +NLFY M G +P F V ACS++ GK ++ Y
Sbjct: 282 TWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYS 341
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ +E C +T+ L+D YAKC L +
Sbjct: 342 LKAGYE---------------CQIYFMTA---------------LVDMYAKCGSLVDARK 371
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +K+ D+V W +M++GYA G E L M+M + + P+ ++++ VL AC+ +
Sbjct: 372 GFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQMER--IMPHELTMASVLRACSSL 429
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICS----CS-------VFNQLSTRDVVVWNSII 260
++ GK IH +++ L G + + C VF ++ +RD++ WN++I
Sbjct: 430 AALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMI 489
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
S ++G+ + AL+L ++ KP+ VT V+VL AC + + +G
Sbjct: 490 SGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSACSHMGLVERG 536
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 116/249 (46%), Gaps = 26/249 (10%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D V +SLI+ Y K + + F I +++ VSW +++GYA+ E L M
Sbjct: 147 DVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMR 206
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA------------CG 236
+ + + + VL+A V GK IH L++ + LS A CG
Sbjct: 207 --REEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGL-LSIASVGNALVTMYGKCG 263
Query: 237 FVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296
+ + F +D + W+++I+ + ++G +AL+L ++ + KP+ T V V+
Sbjct: 264 CLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVIN 323
Query: 297 ACLKLAALPQG-------LGTGS----FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
AC + AL +G L G + AL+DMY +CG++ +RK F + ++V
Sbjct: 324 ACSDIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVL 383
Query: 346 WNVMISVYG 354
W MIS Y
Sbjct: 384 WTSMISGYA 392
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 121/290 (41%), Gaps = 48/290 (16%)
Query: 104 RPLLDLFIKCGRME------------ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
R +DL ++C R + + +G F + + NSL++ YAKC + +
Sbjct: 11 RSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSV----YLTNSLVNLYAKCGSIVKAKL 66
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGF--REEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F I KD+VSWN ++ GY+ G V L M T PN + SGV A +
Sbjct: 67 VFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENT--LPNGHTFSGVFTAAS 124
Query: 210 QVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
G H ++ I++ G ++ + VF+ + R+ V W +
Sbjct: 125 SSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWAT 184
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA--------------CLKLAAL 304
IIS + +A +L + + SVL A CL AL
Sbjct: 185 IISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCL---AL 241
Query: 305 PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
GL + + V NAL+ MYG+CG + + K F L K+ ++W+ MI+ Y
Sbjct: 242 KNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYA 291
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 86/185 (46%), Gaps = 24/185 (12%)
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSC 242
+ P S +L C + K ++ GKAIH +LR ++L CG ++ +
Sbjct: 6 LPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAK 65
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDA--LDLLRDVIVANVKPNTVTIVSVLPACLK 300
VF ++ +DVV WN +I+ + + G V + ++L + + N PN T V A
Sbjct: 66 LVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASS 125
Query: 301 LAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
GL + FV ++LI+MY + G + +RK+F +P +N VSW +
Sbjct: 126 SPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATI 185
Query: 350 ISVYG 354
IS Y
Sbjct: 186 ISGYA 190
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 97/239 (40%), Gaps = 53/239 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+E G Q+H + + G E + + L++++ WTSM+
Sbjct: 331 LEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISG 390
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G E + L+ M + + P V +ACS L GK ++ I F
Sbjct: 391 YAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFS-- 448
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+E+ G ++L YAKC L+ + F ++ +
Sbjct: 449 ----------------LEVPIG------------SALSTMYAKCGSLEDGNLVFRRMPSR 480
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
D+++WNAM++G + G + L +E+ T +P+ ++ VL+AC+ + V+ GK
Sbjct: 481 DIMTWNAMISGLSQNGEGLKALELFEELRHGTT--KPDYVTFVNVLSACSHMGLVERGK 537
>gi|302783925|ref|XP_002973735.1| hypothetical protein SELMODRAFT_99756 [Selaginella moellendorffii]
gi|300158773|gb|EFJ25395.1| hypothetical protein SELMODRAFT_99756 [Selaginella moellendorffii]
Length = 836
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/371 (26%), Positives = 171/371 (46%), Gaps = 60/371 (16%)
Query: 5 IQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPD 64
IQ+H F G Q V+ +W+ M+G Y G+ E LF M +G+RP+
Sbjct: 65 IQLHGKFGNTQKSREVFDGMQQKNVY-SWSMMIGAYAQNGHRNEAFLLFERMESEGIRPN 123
Query: 65 HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFE 124
C V ACS + GK V+ Y+ + +F+
Sbjct: 124 AVTCLHVLGACSYQNELPFGKKVHAYISASEFK--------------------------- 156
Query: 125 EMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLL 184
D + SL++ YAKC + F + +KD+V+WNAM G + LL
Sbjct: 157 ---WDISLQTSLVNMYAKCGSPADAKAVFDSMARKDIVTWNAMAGASVHNG---QSHKLL 210
Query: 185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKL--------GKAIHGYVLRHHIHLSTACG 236
EM++ ++PN + + + + + G + G H V +++ CG
Sbjct: 211 REMDL--QGVKPNATTYASITRGSSTLTGCRAMEQRLLASGYMSHVPVQNALVNVYAKCG 268
Query: 237 FVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV-IVANVKPNTVTIVSVL 295
+ + VFN+L +DV+ W+++ISA+ +SG+ +A+++ R + +V+PN VT V V+
Sbjct: 269 DLEGARKVFNRLERKDVISWSTMISAYNQSGRHSEAIEIYRLMESETSVEPNAVTFVGVI 328
Query: 296 PACL-------------KLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
AC +L +L GL T V +AL+ MY +CG+++ ++K F + ++
Sbjct: 329 GACTGCGDVIRGIQVHGRLVSL--GLETDVAVGSALVQMYVKCGSLEDAKKAFDRVEKRD 386
Query: 343 LVSWNVMISVY 353
++ WN M+S Y
Sbjct: 387 VLCWNFMLSAY 397
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/396 (23%), Positives = 173/396 (43%), Gaps = 80/396 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
GIQVH L+ G+E +GS L++++ W M+ Y+
Sbjct: 340 GIQVHGRLVSLGLETDVAVGSALVQMYVKCGSLEDAKKAFDRVEKRDVLCWNFMLSAYSE 399
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G ++++ + M V P+ V ACS ++D G+ V+ ++S
Sbjct: 400 RGSPQQVIEAYEAM---DVEPNAVTYTNVLIACSAMEDLAQGQKVHSRIVS--------- 447
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
SGL + D + +L+ Y KCR LK + F + +KD++
Sbjct: 448 -----------------SGL----ETDMTMETALLSLYIKCRSLKSACQVFEAMGKKDVI 486
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
WN M+ GY E L M + ++ N ++ + L AC+++K ++ G +
Sbjct: 487 PWNFMMVGYIDHDCDTEALRLYARMH--EAGVEANNVTFANALKACSKIKDIETGSKVEA 544
Query: 223 YVLRHH-----------IHLSTACGFVICSCSVFNQL--STRDVVVWNSIISAFVRSGQV 269
+ +++ ACG + + VF RDVV W ++I+++ ++G+
Sbjct: 545 MITTKGFETDVVTDTALLNMYAACGDLEAAKRVFGSRRGERRDVVFWTAMIASYAQAGRG 604
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNAL 318
+AL L + ++ +KPN+VT SVL AC L + +G S V N+L
Sbjct: 605 EEALALYKTMLSEEIKPNSVTYTSVLSACSSLGNILEGRKIHSKLEGKAEELDVAVQNSL 664
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ MY RCG+++ + F + ++++ SW M++ +
Sbjct: 665 LSMYARCGSLRDAWSCFAKIHNRDVFSWTGMVAAFA 700
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 123/239 (51%), Gaps = 24/239 (10%)
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
N LI + K + S F ++QK++ SW+ M+ YA G R E L + ME
Sbjct: 62 NWLIQLHGKFGNTQKSREVFDGMQQKNVYSWSMMIGAYAQNGHRNEAFLLFERME--SEG 119
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSC 242
++PN ++ VL AC+ + GK +H Y+ + I L T+ CG +
Sbjct: 120 IRPNAVTCLHVLGACSYQNELPFGKKVHAYISASEFKWDISLQTSLVNMYAKCGSPADAK 179
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
+VF+ ++ +D+V WN++ A V +GQ + LLR++ + VKPN T S+ L
Sbjct: 180 AVFDSMARKDIVTWNAMAGASVHNGQ---SHKLLREMDLQGVKPNATTYASITRGSSTLT 236
Query: 303 ---ALPQGLGTGSF-----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
A+ Q L + V NAL+++Y +CG ++ +RK+F + K+++SW+ MIS Y
Sbjct: 237 GCRAMEQRLLASGYMSHVPVQNALVNVYAKCGDLEGARKVFNRLERKDVISWSTMISAY 295
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/348 (22%), Positives = 156/348 (44%), Gaps = 60/348 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W++M+ YN G + E + ++ LM + V P+ V AC+ D G V+
Sbjct: 287 SWSTMISAYNQSGRHSEAIEIYRLMESETSVEPNAVTFVGVIGACTGCGDVIRGIQVHGR 346
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
++S+ E + V L+ +++KCG +E F+
Sbjct: 347 LVSLGLETDVAVGSALVQMYVKCGSLEDAKKAFD-------------------------- 380
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+++++D++ WN ML+ Y+ G ++V + M D++PN ++ + VL AC+
Sbjct: 381 ----RVEKRDVLCWNFMLSAYSERGSPQQVIEAYEAM-----DVEPNAVTYTNVLIACSA 431
Query: 211 VKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
++ + G+ +H + L + + TA C + +C VF + +DV+ WN +
Sbjct: 432 MEDLAQGQKVHSRIVSSGLETDMTMETALLSLYIKCRSLKSACQVFEAMGKKDVIPWNFM 491
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGL 308
+ ++ +AL L + A V+ N VT + L AC K+ + +G
Sbjct: 492 MVGYIDHDCDTEALRLYARMHEAGVEANNVTFANALKACSKIKDIETGSKVEAMITTKGF 551
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLM--PHKNLVSWNVMISVYG 354
T AL++MY CG ++ ++++F +++V W MI+ Y
Sbjct: 552 ETDVVTDTALLNMYAACGDLEAAKRVFGSRRGERRDVVFWTAMIASYA 599
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/379 (24%), Positives = 164/379 (43%), Gaps = 82/379 (21%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF---------CNWTSMMGMYNVL-------GYYE 47
G +VH+ ++ G+E + + LL ++ C MG +V+ GY +
Sbjct: 438 GQKVHSRIVSSGLETDMTMETALLSLYIKCRSLKSACQVFEAMGKKDVIPWNFMMVGYID 497
Query: 48 -----EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
E + L+ M + GV ++ KACS++KD G V + + FE
Sbjct: 498 HDCDTEALRLYARMHEAGVEANNVTFANALKACSKIKDIETGSKVEAMITTKGFE----- 552
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFS--KIKQKD 160
D + + +L++ YA C L+ + F + +++D
Sbjct: 553 -------------------------TDVVTDTALLNMYAACGDLEAAKRVFGSRRGERRD 587
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+V W AM+A YA G EE L M + +++PN+++ + VL+AC+ + + G+ I
Sbjct: 588 VVFWTAMIASYAQAGRGEEALALYKTM--LSEEIKPNSVTYTSVLSACSSLGNILEGRKI 645
Query: 221 HGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H + L A CG + + S F ++ RDV W +++AF G
Sbjct: 646 HSKLEGKAEELDVAVQNSLLSMYARCGSLRDAWSCFAKIHNRDVFSWTGMVAAFAHHGHS 705
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA------------ 317
AL+L+R++ + V P+ VT SVL AC +L +G SFV A
Sbjct: 706 ARALELVREMELCGVSPDAVTFQSVLHACSHEGSLERGW--ASFVSMAVDYAVEPSKDHY 763
Query: 318 --LIDMYGRCGAIQKSRKI 334
++D+ R G + ++R++
Sbjct: 764 LCMVDLLARAGRLAEAREV 782
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 127/247 (51%), Gaps = 32/247 (12%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V N+L++ YAKC L+ + F+++++KD++SW+ M++ Y G E + ME +
Sbjct: 256 VQNALVNVYAKCGDLEGARKVFNRLERKDVISWSTMISAYNQSGRHSEAIEIYRLMES-E 314
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACG------FVICSC--- 242
T ++PN ++ GV+ AC V G +HG ++ + A G +V C
Sbjct: 315 TSVEPNAVTFVGVIGACTGCGDVIRGIQVHGRLVSLGLETDVAVGSALVQMYVKCGSLED 374
Query: 243 --SVFNQLSTRDVVVWNSIISAFVRSG---QVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
F+++ RDV+ WN ++SA+ G QV++A + + +V+PN VT +VL A
Sbjct: 375 AKKAFDRVEKRDVLCWNFMLSAYSERGSPQQVIEAYEAM------DVEPNAVTYTNVLIA 428
Query: 298 CLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
C + L Q GL T + AL+ +Y +C +++ + ++F M K+++ W
Sbjct: 429 CSAMEDLAQGQKVHSRIVSSGLETDMTMETALLSLYIKCRSLKSACQVFEAMGKKDVIPW 488
Query: 347 NVMISVY 353
N M+ Y
Sbjct: 489 NFMMVGY 495
>gi|255552151|ref|XP_002517120.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543755|gb|EEF45283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 477
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 144/270 (53%), Gaps = 14/270 (5%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W++M+ Y G++++ + LF M V PD V + AC+ K+ GK+V+D +I
Sbjct: 193 WSTMINGYYQGGHFDDALQLFEEMRSSNVEPDKMVLSTIISACARAKNLGYGKEVHDLII 252
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHC 151
F + ++ L+ L+ CG M++ LF M ++ +V+ +++ Y K ++ +
Sbjct: 253 ENNFALDPHLESGLISLYAGCGCMDMAKELFTNMSSRNLVVSTTMVSGYLKVGRIEDARL 312
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+++ +KDL+ W+ M++GYA +E +L +EM+ + ++P+ +++ V++ACA +
Sbjct: 313 IFNQMDEKDLICWSIMISGYAESDQPQEALHLFNEMQFL--GIEPDEVTMLSVISACAHL 370
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ K IH +V ++ I + CG + + +VF ++ R+V+ W S+I
Sbjct: 371 GVLDQAKRIHMFVDKNGFGKALSVNNALIDMYAKCGCLEAARAVFEKMQIRNVISWTSMI 430
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
+AF G AL+ + NV+PN VT
Sbjct: 431 NAFAIHGDANSALNYFHQMKEENVEPNAVT 460
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 141/294 (47%), Gaps = 58/294 (19%)
Query: 116 MEITSGLFEEMD--QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYAL 173
MEI G+ ++D +D + L+ Y C + + F K+ +D+V+W+ M+ GY
Sbjct: 144 MEI-HGVLAKLDFYKDPFLQTGLMGMYVGCGKILEARLVFDKMSYRDVVTWSTMINGYYQ 202
Query: 174 GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----- 228
GG ++ L +EM ++++P+ + LS +++ACA+ K + GK +H ++ ++
Sbjct: 203 GGHFDDALQLFEEMR--SSNVEPDKMVLSTIISACARAKNLGYGKEVHDLIIENNFALDP 260
Query: 229 ------IHLSTACG----------------FVICSCSV---------------FNQLSTR 251
I L CG V+ + V FNQ+ +
Sbjct: 261 HLESGLISLYAGCGCMDMAKELFTNMSSRNLVVSTTMVSGYLKVGRIEDARLIFNQMDEK 320
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ----- 306
D++ W+ +IS + S Q +AL L ++ ++P+ VT++SV+ AC L L Q
Sbjct: 321 DLICWSIMISGYAESDQPQEALHLFNEMQFLGIEPDEVTMLSVISACAHLGVLDQAKRIH 380
Query: 307 ------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G G V NALIDMY +CG ++ +R +F M +N++SW MI+ +
Sbjct: 381 MFVDKNGFGKALSVNNALIDMYAKCGCLEAARAVFEKMQIRNVISWTSMINAFA 434
>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
Length = 743
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 160/344 (46%), Gaps = 56/344 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ G E ++LF M +G+ D + V AC L+ + GK+++
Sbjct: 237 SWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHT-- 294
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
L I+ G + + V ++L+D Y KCR ++ +
Sbjct: 295 -----------------LIIRSG-----------YNHNVFVGSALVDMYCKCRSVRYAEA 326
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ K++VSW AML GY GF EE + +M+ + ++P+ +L V+++CA +
Sbjct: 327 VFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQ--RNGIEPDDFTLGSVISSCANL 384
Query: 212 KGVKLGKAIHGYVL-----------RHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ G H L I L CG + S +F+++S RD V W +++
Sbjct: 385 ASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALV 444
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL----------GT 310
S + + G+ + +DL ++V +KP+ VT ++VL AC + + +G G
Sbjct: 445 SGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGI 504
Query: 311 GSFV--WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMIS 351
F + +ID++GR G +++++ MP + + W ++S
Sbjct: 505 IPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLS 548
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/347 (25%), Positives = 172/347 (49%), Gaps = 26/347 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGV-RPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W S++ Y G E V + M+ GV + + S +G+ ++
Sbjct: 104 SWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQ 163
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVS 149
++ F V L+D++ K G + + S +F+E+ +++ ++ N++I + +K S
Sbjct: 164 IVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDS 223
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F +K++D +SW M+ G G E +L +M Q M + + VL AC
Sbjct: 224 KRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMR--QEGMAMDQYTFGSVLTACG 281
Query: 210 QVKGVKLGKAIHGYVLR----HHIHLSTACGFVICSC-------SVFNQLSTRDVVVWNS 258
++ +K GK IH ++R H++ + +A + C C +VF +++ ++VV W +
Sbjct: 282 GLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTA 341
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL---------G 309
++ + ++G +A+ + D+ ++P+ T+ SV+ +C LA+L +G G
Sbjct: 342 MLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSG 401
Query: 310 TGSF--VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
SF V NALI +YG+CG+I+ S ++F M ++ VSW ++S Y
Sbjct: 402 LISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYA 448
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 85/336 (25%), Positives = 147/336 (43%), Gaps = 55/336 (16%)
Query: 73 KACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ-DFL 131
K C E ++ K ++ +I + L++ + K G + +F++M Q +
Sbjct: 13 KLCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSF 72
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
N+++ Y+K L FS + +D VSWN++++GY G E + M M
Sbjct: 73 SWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSM-MKD 131
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVIC 240
+ N I+ S +L + V LG+ IHG +++ + + G V
Sbjct: 132 GVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSV 191
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVD----------------------------- 271
+ VF+++ R+VV++N++I+ +RSG V D
Sbjct: 192 ASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLE 251
Query: 272 --ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNAL 318
A+DL RD+ + + T SVL AC L AL + G FV +AL
Sbjct: 252 AEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSAL 311
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+DMY +C +++ + +F M +KN+VSW M+ YG
Sbjct: 312 VDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYG 347
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/319 (21%), Positives = 133/319 (41%), Gaps = 75/319 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++ G ++H +I G F+GS L++++C +WT+M+
Sbjct: 286 LKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVG 345
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G+ EE V +F M G+ PD F V +C+ L G + +
Sbjct: 346 YGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISF 405
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V L+ L+ KCG +E ++ LF+EM +
Sbjct: 406 ITVSNALITLYGKCGSIEDSNQLFDEM------------------------------SFR 435
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D VSW A+++GYA G E +L + M ++Q ++P+ ++ VL+AC++ V+ G+
Sbjct: 436 DEVSWTALVSGYAQFGKANETIDLFERM-LVQ-GLKPDAVTFIAVLSACSRAGLVERGQQ 493
Query: 220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
+L+ H G + S + +I F R+G++ +A + + +
Sbjct: 494 YFESMLKDH-------GIIPFSDH------------YTCMIDLFGRAGRLEEAKNFINKM 534
Query: 280 IVANVKPNTVTIVSVLPAC 298
+ P+++ ++L +C
Sbjct: 535 PFS---PDSIGWATLLSSC 550
>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 169/346 (48%), Gaps = 55/346 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ Y G E+ +++F M+ G+ D V+ C++ + +G+ V+ +
Sbjct: 263 SWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFG 322
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ AC R D F N+L+D Y+KC L +
Sbjct: 323 V------KACFSRE--DRFC----------------------NTLLDMYSKCGDLDSAKV 352
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ + +VS+ +M+AGYA G E L +EME + + P+ +++ VL CA+
Sbjct: 353 VFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEME--EEGISPDVYTVTAVLNCCARN 410
Query: 212 KGVKLGKAIHGYVLRHH----IHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ + GK +H ++ + I +S A CG + + VF+++ +D++ WN++I
Sbjct: 411 RLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVI 470
Query: 261 SAFVRSGQVVDALDLLRDVIVA-NVKPNTVTIVSVLPACLKLAALPQG-------LGTGS 312
+ ++ +AL L ++V P+ T+ VLPAC L+A +G + G
Sbjct: 471 GGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGY 530
Query: 313 F----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
F V N+L+DMY +CGA+ +R +F + K+LVSW VMI+ YG
Sbjct: 531 FSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYG 576
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 154/331 (46%), Gaps = 54/331 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
++TSM+ Y G E V LF M ++G+ PD + V C+ + GK V++++
Sbjct: 364 SYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWI 423
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+M D V+N+L+D YAKC ++ +
Sbjct: 424 KE------------------------------NDMGFDIFVSNALMDMYAKCGSMREAEL 453
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS+++ KD++SWN ++ GY+ + E +L + + +++ P+ +++ VL ACA +
Sbjct: 454 VFSEMRVKDIISWNTVIGGYSKNCYANEALSLFN-LLLVEKRFSPDERTVACVLPACASL 512
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
G+ IHGY++R+ + + CG ++ + +F+ ++++D+V W +I
Sbjct: 513 SAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMI 572
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
+ + G +A+ L + A ++P+ ++ VS+L AC + +G + +
Sbjct: 573 AGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKI 632
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMP 339
+ ++DM R G + K+ + MP
Sbjct: 633 EPTVEHYACIVDMLARTGNLSKAYRFIENMP 663
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 109/237 (45%), Gaps = 24/237 (10%)
Query: 140 YAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI 199
Y C LK + F ++K + + WN ++ A G L +M + + ++ ++
Sbjct: 139 YTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKM--MSSGVEMDSY 196
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACG-----------FVICSCSVFNQL 248
+ S V + + ++ V G+ +HGY+L+ + G V + VF+++
Sbjct: 197 TFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEM 256
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
+ RDV+ WNSII+ +V +G L + ++ + ++ + TIVSV C + G
Sbjct: 257 TERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGR 316
Query: 309 GTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
F N L+DMY +CG + ++ +F M +++VS+ MI+ Y
Sbjct: 317 AVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYA 373
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 159/328 (48%), Gaps = 27/328 (8%)
Query: 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL 107
+ + LFY + V PD F C V +AC L D G+ ++ + + F N ++ ++
Sbjct: 111 DAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIV 170
Query: 108 DLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNA 166
L+ CG M LFE+M Q D + N +I K + ++ FS++ ++++ SW +
Sbjct: 171 HLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTS 230
Query: 167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR 226
M+AGY G +E +L +ME + ++ N +++ VLAACA + + LG IH Y R
Sbjct: 231 MIAGYVQCGKAKEAIHLFAKME--EAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNR 288
Query: 227 HH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDL 275
H I + CG + +C VF ++ R VV W+++I G+ +AL L
Sbjct: 289 HGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRL 348
Query: 276 LRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNALIDMYG 323
D+ ++PN VT + +L AC + + +G + + + ++D+
Sbjct: 349 FSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLS 408
Query: 324 RCGAIQKSRKIFVLMPHK-NLVSWNVMI 350
R G + ++ + + MP K N V W ++
Sbjct: 409 RAGLLHEAHEFILNMPMKPNGVVWGALL 436
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 32/195 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ Y G +E ++LF M + GV+ + V AC++L +G +++Y
Sbjct: 227 SWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYS 286
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F+ N + L+D+++KCG +E +FEEM+
Sbjct: 287 NRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEME------------------------ 322
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
++ +VSW+AM+ G A+ G EE L +M Q ++PN ++ G+L AC+ +
Sbjct: 323 ------ERTVVSWSAMIGGLAMHGRAEEALRLFSDMS--QVGIEPNGVTFIGLLHACSHM 374
Query: 212 KGVKLGKAIHGYVLR 226
+ G+ + R
Sbjct: 375 GLISEGRRFFASMTR 389
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 11/111 (9%)
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---- 307
+ VWNS + A +DA+ L + +V P+T T SVL ACL L L G
Sbjct: 92 ETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILH 151
Query: 308 -------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ ++ N ++ +Y CG + ++R +F MP +++V+WN+MI+
Sbjct: 152 GVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIA 202
>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
gi|238013832|gb|ACR37951.1| unknown [Zea mays]
gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
Length = 745
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/348 (22%), Positives = 172/348 (49%), Gaps = 27/348 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKG--VRPDHFVCPKVYKACSELKDYRVGKDVYD 89
++ +++ ++ G + V L++ ++ G VRP + A S L D +G+ +
Sbjct: 105 SYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQFHC 164
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKV 148
++ + F NA V PL+ ++ K G + +F+EMD ++ ++ N++I +C+ ++
Sbjct: 165 QILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEE 224
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
+ F + +D ++W M+ G+ G + N M + + + +L AC
Sbjct: 225 ARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRF--QGIAIDQYTFGSILTAC 282
Query: 209 AQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWN 257
+ ++ GK IH Y++R H + + + C + + + F ++S ++++ W
Sbjct: 283 GALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWT 342
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGT 310
++I + ++G +A+ + ++ + P+ T+ SV+ +C LA+L +G L +
Sbjct: 343 ALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVS 402
Query: 311 GSF----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G V NAL+ +YG+CG+I+ + ++F M + VSW +++ Y
Sbjct: 403 GLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYA 450
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/357 (22%), Positives = 160/357 (44%), Gaps = 61/357 (17%)
Query: 25 QLLEVFCN-----WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK 79
+L EV + WT+M+ + G + +N F M +G+ D + + AC L
Sbjct: 227 RLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALS 286
Query: 80 DYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDF 139
GK ++ Y+I + D + V ++L+D
Sbjct: 287 ALEQGKQIHAYIIRTHY------------------------------DDNVFVGSALVDM 316
Query: 140 YAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI 199
Y+KCR +K + F ++ K+++SW A++ GY G EE + EM+ + + P+
Sbjct: 317 YSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQ--RDGIDPDDF 374
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQL 248
+L V+++CA + ++ G H L H+I +S A CG + + +F+++
Sbjct: 375 TLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEM 434
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
D V W ++++ + + G+ + +DL ++ +VKP+ VT + VL AC + + +G
Sbjct: 435 LFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGC 494
Query: 309 GTGSFV------------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ + +ID+Y R G ++++ + MP H + + W ++S
Sbjct: 495 SYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSA 551
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 54/303 (17%)
Query: 106 LLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
LL + K GR +F+ + N+L+ A R L F+ + Q+D VS+
Sbjct: 47 LLTAYGKAGRHARARRVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSY 106
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
NA++AG++ GG L + + ++P+ I++S ++ A + + LG+ H +
Sbjct: 107 NAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQI 166
Query: 225 LRHHIHLST------------------------------------------ACGFVICSC 242
LR ++ C V +
Sbjct: 167 LRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEAR 226
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
+F ++ RD + W ++++ F ++G AL+ R + + + T S+L AC L+
Sbjct: 227 RLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALS 286
Query: 303 ALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
AL QG FV +AL+DMY +C +I+ + F M KN++SW +I
Sbjct: 287 ALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIV 346
Query: 352 VYG 354
YG
Sbjct: 347 GYG 349
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/324 (22%), Positives = 132/324 (40%), Gaps = 85/324 (26%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q+HA++I + F+GS L++++ +WT+++
Sbjct: 288 LEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVG 347
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G EE V +F M G+ PD F V +C+ L G + +
Sbjct: 348 YGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHY 407
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V L+ L+ KCG +E LF+EM + H
Sbjct: 408 ITVSNALVTLYGKCGSIEDAHRLFDEM---------------------LFH--------- 437
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D VSW A++ GYA G +E +L + +M+ D++P+ ++ GVL+AC++
Sbjct: 438 DQVSWTALVTGYAQFGRAKETIDLFE--KMLAKDVKPDGVTFIGVLSACSRA-------- 487
Query: 220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVV-----WNSIISAFVRSGQVVDALD 274
GFV CS F+ + +V + +I + RSG++ +A +
Sbjct: 488 ----------------GFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEE 531
Query: 275 LLRDVIVANVKPNTVTIVSVLPAC 298
++ + + P+ + ++L AC
Sbjct: 532 FIKQM---PMHPDAIGWGTLLSAC 552
>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 905
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 101/397 (25%), Positives = 173/397 (43%), Gaps = 75/397 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSM-------MGMYN------------ 41
+ G Q+HAH I +G+ +++V+ S+ G+ N
Sbjct: 308 LNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVG 367
Query: 42 --VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
G E + LF MI +R D V+ AC+E K Y G+ V+
Sbjct: 368 LVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVH----------- 416
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
C L IK G D D VNN+++D Y KC+ L ++ F +KQK
Sbjct: 417 -C-------LAIKSG-----------FDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQK 457
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D VSWNA++A G ++ +L EM++ M+P+ + VL ACA ++ ++ G
Sbjct: 458 DSVSWNAIIAALEQNGHYDDT--ILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLM 515
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H V++ + + CG + + + +++ + VV WN+I+S F + +
Sbjct: 516 VHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKE 575
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNA 317
+A +++ +KP+ T +VL C LA + Q + ++ +
Sbjct: 576 SEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISST 635
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L+DMY +CG + S +F + ++ VSWN MI Y
Sbjct: 636 LVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYA 672
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 154/345 (44%), Gaps = 56/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ G+Y++ + F M+ G++PD F V KAC+ L+ G V+D +
Sbjct: 461 SWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKV 520
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I SGL D V ++++D Y KC + +
Sbjct: 521 IK--------------------------SGL----GSDAFVASTVVDMYCKCGIIDEAQK 550
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+I + +VSWNA+L+G++L EE EM + ++P+ + + VL CA +
Sbjct: 551 LHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEM--LDMGLKPDHFTFATVLDTCANL 608
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++LGK IHG +++ + + CG + S VF ++ RD V WN++I
Sbjct: 609 ATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMI 668
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----LGTGSFV- 314
+ G V+AL + + NV PN T V+VL AC + G L T +
Sbjct: 669 CGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKL 728
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
+ ++D+ GR Q++ K MP + + V W ++S+
Sbjct: 729 EPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSI 773
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 151/343 (44%), Gaps = 54/343 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ Y G ++E V+LF M +GV PD + K+CS L++ +G V+
Sbjct: 158 SWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVH--- 214
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
L +K G +EI D ++L+D Y KCR L + C
Sbjct: 215 ----------------ALAVKTG-LEI----------DVRTGSALVDMYGKCRSLDDALC 247
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +++ VSW A +AG + V L +EM + + + S + +CA +
Sbjct: 248 FFYGMPERNWVSWGAAIAGCVQN--EQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAM 305
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSC-----------SVFNQLSTRDVVVWNSII 260
+ G+ +H + +++ G I F L V N+++
Sbjct: 306 SCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMM 365
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLG 309
VR+G ++A+ L + +I ++++ + V++ V AC + A+ G
Sbjct: 366 VGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFD 425
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
V NA++D+YG+C A+ ++ IF M K+ VSWN +I+
Sbjct: 426 VDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAA 468
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 105/232 (45%), Gaps = 53/232 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G+ VH +I G+ AF+ S +++++C +W +++
Sbjct: 510 LEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSG 569
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+++ EE F M+D G++PDHF V C+ L +GK ++ +I
Sbjct: 570 FSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIK------ 623
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+EM D ++++L+D YAKC + S F K++++
Sbjct: 624 ------------------------QEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKR 659
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
D VSWNAM+ GYAL G E + + M+ + ++ PN + VL AC+ V
Sbjct: 660 DFVSWNAMICGYALHGLGVEALRMFERMQ--KENVVPNHATFVAVLRACSHV 709
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/315 (19%), Positives = 139/315 (44%), Gaps = 27/315 (8%)
Query: 61 VRPDHFVCPKVYKACSEL--KDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEI 118
V P +V+++C++ + G+ + M+ F A V LL ++ +C
Sbjct: 53 VAPARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPTAFVSNCLLQMYARCAGAAC 112
Query: 119 TSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFR 177
+F+ M + D + N+++ Y+ + + F + D+VSWNA+++GY G
Sbjct: 113 ARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMF 172
Query: 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGF 237
+E +L +EM + + P+ + + +L +C+ ++ + LG +H ++ + + G
Sbjct: 173 QESVDLF--VEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGS 230
Query: 238 VIC-----------SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286
+ + F + R+ V W + I+ V++ Q V L+L ++ +
Sbjct: 231 ALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGV 290
Query: 287 NTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIF 335
+ + S +C ++ L G + V A++D+Y + ++ +R+ F
Sbjct: 291 SQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAF 350
Query: 336 VLMPHKNLVSWNVMI 350
+P+ + + N M+
Sbjct: 351 FGLPNHTVETSNAMM 365
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 11/127 (8%)
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
G + + ++F+ + DVV WN+++S + + G +++DL ++ V P+ T +L
Sbjct: 139 GDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLL 198
Query: 296 PACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLV 344
+C L A+ GL +AL+DMYG+C ++ + F MP +N V
Sbjct: 199 KSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWV 258
Query: 345 SWNVMIS 351
SW I+
Sbjct: 259 SWGAAIA 265
>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 708
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 108/392 (27%), Positives = 167/392 (42%), Gaps = 75/392 (19%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYN 41
G Q HA I F+GS LL ++C W +M+ Y
Sbjct: 129 FGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYA 188
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+ E +F LM + + F V A + + GK ++ C
Sbjct: 189 IQRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIH------------C 236
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
L +K G + S L N+L+ YAKC L S F K+
Sbjct: 237 -------LAVKTGLLVFLSIL-----------NALVTMYAKCGSLDDSLQVFEMSNDKNS 278
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
++W+AM+ GYA G + L M + P+ +L GVL AC+ V+ GK +H
Sbjct: 279 ITWSAMITGYAQSGDSHKALKLFSRMHF--AGINPSEFTLVGVLNACSDACAVEEGKQVH 336
Query: 222 GYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y+L+ +++ TA G + FN L D+V+W S+I+ +V++G+
Sbjct: 337 NYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENE 396
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALI 319
DAL L + + + PN +T+ SVL AC LAA Q GLG + +AL
Sbjct: 397 DALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLEVTIGSALS 456
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
MY +CG +++ +F MP ++++SWN MIS
Sbjct: 457 TMYAKCGNLEEGNIVFRRMPERDIISWNAMIS 488
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 130/287 (45%), Gaps = 43/287 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W++M+ Y G + + LF M G+ P F V ACS+ GK V++Y+
Sbjct: 280 TWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEGKQVHNYL 339
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + FE + +L+D YAK + +
Sbjct: 340 LKLGFESQ------------------------------LYIMTALVDMYAKSGVTEDARK 369
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ ++Q DLV W +M+AGY G E+ +L M+M + PN ++++ VL AC+ +
Sbjct: 370 GFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQM--EGILPNELTMASVLKACSNL 427
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICS----CS-------VFNQLSTRDVVVWNSII 260
G+ IH +++ + L G + + C VF ++ RD++ WN++I
Sbjct: 428 AAFDQGRQIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPERDIISWNAMI 487
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
S ++G +AL+L ++ + KP+ VT V+VL AC + + G
Sbjct: 488 SGLSQNGYGKEALELFEEMRQQDTKPDDVTFVNVLSACSHMGLVDSG 534
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 118/247 (47%), Gaps = 24/247 (9%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D V +SL++ Y K L + F ++ +++ V+W M++GYA+ E + + M
Sbjct: 145 DVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMR 204
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY-----------VLRHHIHLSTACGF 237
+ D+ N + + VL+A A + V GK IH +L + + CG
Sbjct: 205 REEEDV--NEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGS 262
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ S VF + ++ + W+++I+ + +SG AL L + A + P+ T+V VL A
Sbjct: 263 LDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNA 322
Query: 298 CLKLAALPQG---------LGTGS--FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
C A+ +G LG S ++ AL+DMY + G + +RK F + +LV W
Sbjct: 323 CSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLW 382
Query: 347 NVMISVY 353
MI+ Y
Sbjct: 383 TSMIAGY 389
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 118/254 (46%), Gaps = 44/254 (17%)
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQT- 192
NSLI+FYAKC +L + F +I KD++SWN ++ GY+ G T ME+ Q
Sbjct: 47 NSLINFYAKCCHLPKAKLVFDRIHNKDVISWNCLINGYSQQG----PTGSSFVMELFQRM 102
Query: 193 ---DMQPNTISLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFV 238
++ PN + SG+ A + + + G+ H +V +++ G +
Sbjct: 103 RADNILPNAHTFSGIFTAASNLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLL 162
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFV---RSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
+ VF+++ R+ V W ++IS + +G+ + +L+R N SVL
Sbjct: 163 FEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMRR---EEEDVNEFAFTSVL 219
Query: 296 PACLKLAALPQGLGTGS---------------FVWNALIDMYGRCGAIQKSRKIFVLMPH 340
A A+P+ + +G + NAL+ MY +CG++ S ++F +
Sbjct: 220 SAL----AVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVFEMSND 275
Query: 341 KNLVSWNVMISVYG 354
KN ++W+ MI+ Y
Sbjct: 276 KNSITWSAMITGYA 289
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 90/188 (47%), Gaps = 29/188 (15%)
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICS--------CS-- 243
+ P +S L K ++ G+A+H +++ + S++C ++ S C
Sbjct: 3 LHPQNLSSFNSLVQFTHQKSLQKGRALHAQIIK--LASSSSCIYLANSLINFYAKCCHLP 60
Query: 244 ----VFNQLSTRDVVVWNSIISAFVRSGQVVDA--LDLLRDVIVANVKPNTVTIVSVLPA 297
VF+++ +DV+ WN +I+ + + G + ++L + + N+ PN T + A
Sbjct: 61 KAKLVFDRIHNKDVISWNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTA 120
Query: 298 CLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
L+++ G + FV ++L++MY + G + ++R++F MP +N V+W
Sbjct: 121 ASNLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTW 180
Query: 347 NVMISVYG 354
MIS Y
Sbjct: 181 ATMISGYA 188
>gi|347954476|gb|AEP33738.1| chlororespiratory reduction 21, partial [Matthiola incana]
Length = 784
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 162/345 (46%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++G+ +G E + F M++ G+ PD+FV P V KAC L+ R G+ V+ Y+
Sbjct: 117 SWAAIIGVKCRIGLGEGALMGFVEMLENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYV 176
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ CV V +SL D Y KC L +
Sbjct: 177 AKAGL--HHCV----------------------------FVASSLADMYGKCGVLDDARK 206
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F I ++ V+WNA++ GY G EE LL EM + ++P +++S L+A A +
Sbjct: 207 VFDYIPDRNAVAWNALMVGYVQNGMNEEAIRLLSEMR--KEGIEPTRVTVSTCLSASANM 264
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICS--CSV---------FNQLSTRDVVVWNSII 260
G++ GK H + + + L G I + C V F+ + + V WN +I
Sbjct: 265 GGIEEGKQSHAXXIVNGLXLDNILGTSILNFYCXVGLIEYAEMIFDGMIEKXXVTWNLLI 324
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----LKLAA------LPQGLG 309
S +V+ G V +A+ + + + N+K + VT+ +++ A LKL + GL
Sbjct: 325 SGYVQQGLVEEAIHMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLE 384
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + + +DMY +CG+I ++K+F K+L+ WN ++S Y
Sbjct: 385 SDIVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYA 429
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 93/426 (21%), Positives = 182/426 (42%), Gaps = 87/426 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q HA IV G+ L LG+ +L +C W ++
Sbjct: 267 IEEGKQSHAXXIVNGLXLDNILGTSILNFYCXVGLIEYAEMIFDGMIEKXXVTWNLLISG 326
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G EE +++ LM + ++ D + A + ++ ++GK++ Y I E +
Sbjct: 327 YVQQGLVEEAIHMCQLMRRENLKFDCVTLSTLMSAATSTQNLKLGKEIQCYCIRHGLESD 386
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEE-MDQDFLVNNSLIDFYAKC--------------- 143
+ +D++ KCG + +F+ + +D ++ N+L+ YA
Sbjct: 387 IVLASTAVDMYAKCGSIVNAKKVFDSTVQKDLILWNTLLSAYADSGLSGEALRLFYEMQL 446
Query: 144 ------------------RYLKVSHCK--FSKIKQK----DLVSWNAMLAGYALGGFREE 179
R +V+ K F +++ +L+SW M+ G G EE
Sbjct: 447 ESVPPNVITWNLIILSLLRNGQVNEAKEMFLQMQSSGIFPNLISWTTMMNGLVQNGCSEE 506
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----------- 228
L +M+ ++ ++PN +++ L+ACA + + G++IHGY++R+
Sbjct: 507 AILFLRKMQ--ESGLRPNAFTITVALSACANLASLHFGRSIHGYIIRNQQYSFSAWIETS 564
Query: 229 -IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
+ + CG + + VF ++ ++N++ISA+ G+V +A+ L R + VKP+
Sbjct: 565 LVDMYAKCGDINKAERVFGSKLCSELPLYNAMISAYALYGKVREAITLYRSLEDGGVKPD 624
Query: 288 TVTIVSVLPACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIF 335
+TI S+L AC + Q + S + + ++D+ G K+ ++
Sbjct: 625 NITITSLLSACNYGRDVNQAIEVFSDMVSKHGMKPCLEHYGLMVDLLASAGETDKALRLM 684
Query: 336 VLMPHK 341
MP+K
Sbjct: 685 EEMPYK 690
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 143/305 (46%), Gaps = 44/305 (14%)
Query: 77 ELKDYRVGKDVYDYMIS-IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNS 135
+ ++ R+G ++Y ++ +E + C + + +K G DF N
Sbjct: 39 DYRNIRIGPEIYGEILQGCVYERDLCTGQQIHAQILKKG--------------DFYARNE 84
Query: 136 LID-----FYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
I+ FYAKC L+++ FSK++ +++ SW A++ G E L+ +EM+
Sbjct: 85 YIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEGA--LMGFVEML 142
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVI 239
+ + P+ + V AC ++ + G+ +HGYV + +H + CG +
Sbjct: 143 ENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLD 202
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ VF+ + R+ V WN+++ +V++G +A+ LL ++ ++P VT+ + L A
Sbjct: 203 DARKVFDYIPDRNAVAWNALMVGYVQNGMNEEAIRLLSEMRKEGIEPTRVTVSTCLSASA 262
Query: 300 KLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
+ + + GL + + ++++ Y G I+ + IF M K V+WN+
Sbjct: 263 NMGGIEEGKQSHAXXIVNGLXLDNILGTSILNFYCXVGLIEYAEMIFDGMIEKXXVTWNL 322
Query: 349 MISVY 353
+IS Y
Sbjct: 323 LISGY 327
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 88/204 (43%), Gaps = 27/204 (13%)
Query: 174 GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR------H 227
G RE ++ L+ EM+ + P +L C + + G+ IH +L+
Sbjct: 26 GEIREALS-LVTEMDYRNIRIGPEI--YGEILQGCVYERDLCTGQQIHAQILKKGDFYAR 82
Query: 228 HIHLSTACGFVICSCS-------VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280
+ ++ T C +F++L R+V W +II R G AL +++
Sbjct: 83 NEYIETKLVIFYAKCDALEIAQVLFSKLRVRNVFSWAAIIGVKCRIGLGEGALMGFVEML 142
Query: 281 VANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQ 329
+ P+ + +V AC L G G FV ++L DMYG+CG +
Sbjct: 143 ENGIFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHHCVFVASSLADMYGKCGVLD 202
Query: 330 KSRKIFVLMPHKNLVSWNVMISVY 353
+RK+F +P +N V+WN ++ Y
Sbjct: 203 DARKVFDYIPDRNAVAWNALMVGY 226
>gi|302785790|ref|XP_002974666.1| hypothetical protein SELMODRAFT_101 [Selaginella moellendorffii]
gi|300157561|gb|EFJ24186.1| hypothetical protein SELMODRAFT_101 [Selaginella moellendorffii]
Length = 921
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/397 (24%), Positives = 179/397 (45%), Gaps = 87/397 (21%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMY-NVLGYYEEI---------- 49
+E G+++HA + GVE A + + L++++ W G + + L +E +
Sbjct: 217 LETGMRIHALIRSKGVE-SAMVSTGLIDLYGKW----GFFEDALQVFESVRDRDVVIWTA 271
Query: 50 --------------VNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIK 95
+ LF M +G++ ++ K+ ACS L+D+ GK + D + ++
Sbjct: 272 FIAACVYHGQSGFALELFRKMEAEGLQANNVTFSKILAACSNLEDFETGKTIEDRIYTLG 331
Query: 96 FEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSK 155
E + ++ +L L +CG + T EM F +
Sbjct: 332 LEYDDVLQDGILSLHARCGSLVGT----REM--------------------------FDR 361
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
+ + +V+W M+A Y G+ E L M D++P+ I+LS VL AC+++K ++
Sbjct: 362 MPHRTVVTWTTMIAAYNQRGYSMEALELYHCM-----DIEPDDIALSNVLQACSRLKNLE 416
Query: 216 LGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
G+A+H + S CG + + F+ RDV+ W S+I+A+
Sbjct: 417 QGRAVHSRIASRDFEPSLMVQTLLVDMYVKCGDLAEARRTFDGFKARDVISWTSLITAYS 476
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTG----SF 313
+AL++ + + V+PN++T +V+ AC +L++L G + TG F
Sbjct: 477 HENFGREALEVFHSMELEGVEPNSITFCTVIDACSRLSSLLPGRALHSRVVATGHISDEF 536
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
V NAL+ MY + G + +R +F +P K SW VM+
Sbjct: 537 VGNALVSMYSKFGRVDFARVVFDSIPVKRYPSWRVML 573
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 147/344 (42%), Gaps = 53/344 (15%)
Query: 31 CNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
W +M+ Y +++E + F M P V AC D GK ++
Sbjct: 66 ATWNTMITAYVQHDFFQEALEAFRRM---DAPPSSITFTSVLGACCSPDDLETGKAIHRQ 122
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ P ++ D ++ NSL+ Y KC L+ +
Sbjct: 123 I---------GASSP-------------------QIQADEILQNSLVTMYGKCGSLEDAE 154
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F I++K+ SW AM+ YA G+ + +M M + ++P+ I+ +GVL AC+
Sbjct: 155 RVFHGIRRKNAFSWTAMITAYAQNGYERRAIEVFGDM-MSEGRVEPDPITYAGVLTACST 213
Query: 211 VKGVKLGKAIHGYVLRHHIH---LSTAC-------GFVICSCSVFNQLSTRDVVVWNSII 260
+ ++ G IH + + +ST GF + VF + RDVV+W + I
Sbjct: 214 LGDLETGMRIHALIRSKGVESAMVSTGLIDLYGKWGFFEDALQVFESVRDRDVVIWTAFI 273
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLG 309
+A V GQ AL+L R + ++ N VT +L AC L GL
Sbjct: 274 AACVYHGQSGFALELFRKMEAEGLQANNVTFSKILAACSNLEDFETGKTIEDRIYTLGLE 333
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ + ++ ++ RCG++ +R++F MPH+ +V+W MI+ Y
Sbjct: 334 YDDVLQDGILSLHARCGSLVGTREMFDRMPHRTVVTWTTMIAAY 377
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 152/345 (44%), Gaps = 57/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WT+M+ YN GY E + L++ M + PD V +ACS LK+ G+ V+ +
Sbjct: 369 TWTTMIAAYNQRGYSMEALELYHCM---DIEPDDIALSNVLQACSRLKNLEQGRAVHSRI 425
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
S FE P L +V L+D Y KC L +
Sbjct: 426 ASRDFE-------PSL-----------------------MVQTLLVDMYVKCGDLAEARR 455
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K +D++SW +++ Y+ F E + ME+ ++PN+I+ V+ AC+++
Sbjct: 456 TFDGFKARDVISWTSLITAYSHENFGREALEVFHSMEL--EGVEPNSITFCTVIDACSRL 513
Query: 212 KGVKLGKAIHGYVLRH-HIH----------LSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ G+A+H V+ HI + + G V + VF+ + + W ++
Sbjct: 514 SSLLPGRALHSRVVATGHISDEFVGNALVSMYSKFGRVDFARVVFDSIPVKRYPSWRVML 573
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTGSF- 313
A ++G +AL++ + + +P + + L +C L + + + + F
Sbjct: 574 VALTQNGHSHEALEMYSRIHLEGFRPGSPIFSAALVSCTALEDVSRARAIHGVIKSSDFY 633
Query: 314 ----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ N L+++Y +CG ++++R +F M KN VSW MI Y
Sbjct: 634 PDLVLSNVLMNVYAKCGELEEARLVFDQMTEKNEVSWTTMIGGYA 678
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 157/345 (45%), Gaps = 59/345 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+WT+M+ Y GY + +F M+ +G V PD V ACS L D G ++
Sbjct: 167 SWTAMITAYAQNGYERRAIEVFGDMMSEGRVEPDPITYAGVLTACSTLGDLETGMRIHAL 226
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ S E +A V L+DL+ K G FE+ L+V
Sbjct: 227 IRSKGVE-SAMVSTGLIDLYGKW-------GFFEDA-------------------LQV-- 257
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ +D+V W A +A G L +ME +Q N ++ S +LAAC+
Sbjct: 258 --FESVRDRDVVIWTAFIAACVYHGQSGFALELFRKMEA--EGLQANNVTFSKILAACSN 313
Query: 211 VKGVKLGKAIHGY----------VLRHHI-HLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
++ + GK I VL+ I L CG ++ + +F+++ R VV W ++
Sbjct: 314 LEDFETGKTIEDRIYTLGLEYDDVLQDGILSLHARCGSLVGTREMFDRMPHRTVVTWTTM 373
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS------- 312
I+A+ + G ++AL+L +++P+ + + +VL AC +L L QG S
Sbjct: 374 IAAYNQRGYSMEALELYH---CMDIEPDDIALSNVLQACSRLKNLEQGRAVHSRIASRDF 430
Query: 313 ----FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V L+DMY +CG + ++R+ F ++++SW +I+ Y
Sbjct: 431 EPSLMVQTLLVDMYVKCGDLAEARRTFDGFKARDVISWTSLITAY 475
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/345 (22%), Positives = 144/345 (41%), Gaps = 57/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTS++ Y+ + E + +F+ M +GV P+ V ACS L G+ ++ +
Sbjct: 467 SWTSLITAYSHENFGREALEVFHSMELEGVEPNSITFCTVIDACSRLSSLLPGRALHSRV 526
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
++ G + D V N+L+ Y+K + +
Sbjct: 527 VAT-------------------GHI-----------SDEFVGNALVSMYSKFGRVDFARV 556
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F I K SW ML G E + + + +P + S L +C +
Sbjct: 557 VFDSIPVKRYPSWRVMLVALTQNGHSHEALEMYSRIHL--EGFRPGSPIFSAALVSCTAL 614
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ V +AIHG + +++ CG + + VF+Q++ ++ V W ++I
Sbjct: 615 EDVSRARAIHGVIKSSDFYPDLVLSNVLMNVYAKCGELEEARLVFDQMTEKNEVSWTTMI 674
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
+ ++G+ +AL+L + + +V+PN + V V+ +C L AL +G L
Sbjct: 675 GGYAQNGRPAEALELYKAM---DVQPNFIAFVPVISSCADLGALVEGQRVHARLSDAGLQ 731
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ AL++MY +CG + +R+ F + +WN M + Y
Sbjct: 732 NNEVIVTALVNMYAKCGKLGLAREFFDSTYCPDAGAWNSMATAYA 776
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/328 (21%), Positives = 142/328 (43%), Gaps = 58/328 (17%)
Query: 30 FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
+ +W M+ G+ E + ++ + +G RP + +C+ L+D + ++
Sbjct: 566 YPSWRVMLVALTQNGHSHEALEMYSRIHLEGFRPGSPIFSAALVSCTALEDVSRARAIHG 625
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
+ S F D +++N L++ YAKC L+ +
Sbjct: 626 VIKSSDFY------------------------------PDLVLSNVLMNVYAKCGELEEA 655
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F ++ +K+ VSW M+ GYA G E L M D+QPN I+ V+++CA
Sbjct: 656 RLVFDQMTEKNEVSWTTMIGGYAQNGRPAEALELYKAM-----DVQPNFIAFVPVISSCA 710
Query: 210 QVKGVKLGKAIHGY-----------VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ + G+ +H ++ +++ CG + + F+ D WNS
Sbjct: 711 DLGALVEGQRVHARLSDAGLQNNEVIVTALVNMYAKCGKLGLAREFFDSTYCPDAGAWNS 770
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------ 306
+ +A+ + G L+L R++ + V+PN +T++SVL AC + L +
Sbjct: 771 MATAYAQFGHGSQVLELYREMCLQGVQPNGITLLSVLVACSHMGMLEECEHRFECMVADH 830
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKI 334
G+ S ++ + D+ GR G ++++ K+
Sbjct: 831 GIAPTSEHYSCMTDLLGRSGRLEEAEKV 858
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 115/248 (46%), Gaps = 29/248 (11%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D ++ N+L++ YAKC L+ S F ++++ + +WN M+ Y F +E M
Sbjct: 33 DTVLQNALLNLYAKCGDLEESRRIFEAMERRTVATWNTMITAYVQHDFFQEALEAFRRM- 91
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-------------AC 235
D P++I+ + VL AC ++ GKAIH + + C
Sbjct: 92 ----DAPPSSITFTSVLGACCSPDDLETGKAIHRQIGASSPQIQADEILQNSLVTMYGKC 147
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV-ANVKPNTVTIVSV 294
G + + VF+ + ++ W ++I+A+ ++G A+++ D++ V+P+ +T V
Sbjct: 148 GSLEDAERVFHGIRRKNAFSWTAMITAYAQNGYERRAIEVFGDMMSEGRVEPDPITYAGV 207
Query: 295 LPACLKLAALPQGLG----------TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLV 344
L AC L L G+ + V LID+YG+ G + + ++F + +++V
Sbjct: 208 LTACSTLGDLETGMRIHALIRSKGVESAMVSTGLIDLYGKWGFFEDALQVFESVRDRDVV 267
Query: 345 SWNVMISV 352
W I+
Sbjct: 268 IWTAFIAA 275
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 11/75 (14%)
Query: 290 TIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLM 338
T VL AC L + +G + + NAL+++Y +CG +++SR+IF M
Sbjct: 1 TFACVLSACAGLKDMERGKKVHRRIRESVARVDTVLQNALLNLYAKCGDLEESRRIFEAM 60
Query: 339 PHKNLVSWNVMISVY 353
+ + +WN MI+ Y
Sbjct: 61 ERRTVATWNTMITAY 75
>gi|357517181|ref|XP_003628879.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522901|gb|AET03355.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 633
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 103/405 (25%), Positives = 186/405 (45%), Gaps = 56/405 (13%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLG--------YYEEIVNLF 53
+ G QVH H++ G F+ + LL +C + ++ Y V + ++N F
Sbjct: 135 QFGFQVHCHVLRNGFGSDVFVNNALLNFYCGFGDVVNAYKVFDESFVRDCVSFNTMINGF 194
Query: 54 YLMID-----------KGV--RPDHFVCPKVYKACSELKDYRVGKDVYD--YMISIKFEG 98
D +GV RPD + + CS L+DYR+G+ V+ Y F G
Sbjct: 195 ARKGDVSGCFRVFGEMRGVCVRPDEYTFVALLSGCSVLEDYRIGRQVHGLVYRELGCFGG 254
Query: 99 NACVKRPLLDLFIKCGRM---EITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSK 155
N + L+D++ KCGR+ E + + SL+ YA +KV+ F +
Sbjct: 255 NVLLVNKLVDMYAKCGRLVMAETVLSVVKPGKSVVAAWTSLVSAYALRGEVKVARRLFDQ 314
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
+ ++D+VSW AM++GY+ G +E L ++E + M+P+ +++ L+ACA++ ++
Sbjct: 315 MGERDVVSWTAMISGYSHAGCFQEALELFVKLEGL--GMKPDEVAVVAALSACARLGALE 372
Query: 216 LGKAIHGYVLRHH-------------IHLSTACGFVICSCSVFNQLS--TRDVVVWNSII 260
LG+ IH + + + CG + + VF + S + ++NSII
Sbjct: 373 LGRRIHRQYAGENWTCSINRGFTSAVVDMYAKCGSIDIALDVFRKTSDDKKTTFLYNSII 432
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC--LKLAALPQGLGTGSFV---- 314
S G+ A +L ++ + +KP+ +T V+VL AC L + L F
Sbjct: 433 SGLAHHGRGEYAKNLFEEMGLLGLKPDNITFVAVLSACGHCGLVDFGKKLFESMFTVYGV 492
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
+ ++D+ GR G + ++ ++ + MP K N V W ++S
Sbjct: 493 SPEMEHYGCMVDLLGRAGHLDEAHRLILKMPFKANAVIWRALLSA 537
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 112/261 (42%), Gaps = 62/261 (23%)
Query: 153 FSKIKQKDLVSWNAMLAGYA-LGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F++I D+ WNA++ Y+ + + +L M + + + P++ + +L ACA V
Sbjct: 72 FTQITNPDIFLWNAIIKAYSQIHSPPQHPFSLFKTM--LNSSVLPDSFTFPFLLKACANV 129
Query: 212 --KGVKLGKAIHGYVLRH---------HIHLSTACGF--VICSCSVFNQLSTRDVVVWNS 258
+ G +H +VLR+ + L+ CGF V+ + VF++ RD V +N+
Sbjct: 130 LISAPQFGFQVHCHVLRNGFGSDVFVNNALLNFYCGFGDVVNAYKVFDESFVRDCVSFNT 189
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----LKLAALPQGL----- 308
+I+ F R G V + ++ V+P+ T V++L C ++ GL
Sbjct: 190 MINGFARKGDVSGCFRVFGEMRGVCVRPDEYTFVALLSGCSVLEDYRIGRQVHGLVYREL 249
Query: 309 ---GTGSFVWNALIDMYGRCG---------------------------------AIQKSR 332
G + N L+DMY +CG ++ +R
Sbjct: 250 GCFGGNVLLVNKLVDMYAKCGRLVMAETVLSVVKPGKSVVAAWTSLVSAYALRGEVKVAR 309
Query: 333 KIFVLMPHKNLVSWNVMISVY 353
++F M +++VSW MIS Y
Sbjct: 310 RLFDQMGERDVVSWTAMISGY 330
>gi|297798862|ref|XP_002867315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313151|gb|EFH43574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 141/255 (55%), Gaps = 27/255 (10%)
Query: 124 EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNL 183
E + + L++ +L+D Y K + F +++ K+ VSW AM++G + + EV
Sbjct: 179 ERIQESVLLSTALLDMYLKFDDPAAAFHVFDQMELKNEVSWTAMISG-CVANYNYEVG-- 235
Query: 184 LDEMEMIQTD-MQPNTISLSGVLAACAQVK-GVKLGKAIHGYVLRHHIH----------- 230
+D +Q + ++PN ++L VL AC ++ G++L K IHG+ RH H
Sbjct: 236 IDFFRAMQRENLRPNRVTLLSVLPACVELGYGLRLVKEIHGFSFRHGFHSDDRLIAAFMT 295
Query: 231 LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
+ CG V S +F RDVV+W+S+IS + +G +A++LL + +PN+VT
Sbjct: 296 MYCRCGSVSLSRLLFETSKVRDVVMWSSMISGYAENGDCSEAMNLLSQMRKEGSEPNSVT 355
Query: 291 IVSVLPAC-----LKLAA------LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+++V+ AC LK+A+ L G + + NALIDMY +CG++ +R++F +
Sbjct: 356 LLAVVSACTHSASLKIASTVHSQILKCGFMSHILLSNALIDMYAKCGSLPAAREVFYELN 415
Query: 340 HKNLVSWNVMISVYG 354
K+LVSW+ MI+ YG
Sbjct: 416 EKDLVSWSSMINAYG 430
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 156/345 (45%), Gaps = 56/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK-DYRVGKDVYDY 90
+WT+M+ YE ++ F M + +RP+ V AC EL R+ K+++ +
Sbjct: 218 SWTAMISGCVANYNYEVGIDFFRAMQRENLRPNRVTLLSVLPACVELGYGLRLVKEIHGF 277
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
F + + + ++ +CG + ++ LFE
Sbjct: 278 SFRHGFHSDDRLIAAFMTMYCRCGSVSLSRLLFETS------------------------ 313
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
K +D+V W++M++GYA G E NLL +M + +PN+++L V++AC
Sbjct: 314 ------KVRDVVMWSSMISGYAENGDCSEAMNLLSQMR--KEGSEPNSVTLLAVVSACTH 365
Query: 211 VKGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
+K+ +H +L+ HI LS A CG + + VF +L+ +D+V W+S+
Sbjct: 366 SASLKIASTVHSQILKCGFMSHILLSNALIDMYAKCGSLPAAREVFYELNEKDLVSWSSM 425
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----LGTGSF-- 313
I+A+ G +AL++ + +I A + + + ++VL AC + + G +
Sbjct: 426 INAYGLHGHGSEALEIFKGMIKAGHEVDGMAFLAVLSACNHAGLVEEAQTIFTQAGKYHM 485
Query: 314 -----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMISV 352
++ I++ GR G I + ++ + MP K W+ ++S
Sbjct: 486 PVTLEHYSCYINLLGRFGKIDDAFEVTINMPMKPSARIWSSLLSA 530
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 121/253 (47%), Gaps = 27/253 (10%)
Query: 127 DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDE 186
D+D +V+NSLI YAK + F ++ Q+D VS+ +++ Y G E LL E
Sbjct: 79 DRDTVVSNSLISMYAKLSRAYAARKVFDEMLQRDTVSYCSIVNCYCQDGLLSEAMKLLKE 138
Query: 187 MEMIQTDMQPNTISLSGVLAACAQV-KGVKLGKAIHGYVL-----RHHIHLSTAC----- 235
M P + ++ +LA C ++ K+ + +H VL + + LSTA
Sbjct: 139 MYFY--GFVPKSELVASLLALCTRMGSSSKVARMLHALVLVDERIQESVLLSTALLDMYL 196
Query: 236 --GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
+ VF+Q+ ++ V W ++IS V + +D R + N++PN VT++S
Sbjct: 197 KFDDPAAAFHVFDQMELKNEVSWTAMISGCVANYNYEVGIDFFRAMQRENLRPNRVTLLS 256
Query: 294 VLPACLKLA------------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK 341
VLPAC++L + G + + A + MY RCG++ SR +F +
Sbjct: 257 VLPACVELGYGLRLVKEIHGFSFRHGFHSDDRLIAAFMTMYCRCGSVSLSRLLFETSKVR 316
Query: 342 NLVSWNVMISVYG 354
++V W+ MIS Y
Sbjct: 317 DVVMWSSMISGYA 329
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 108/266 (40%), Gaps = 55/266 (20%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W+SM+ Y G E +NL M +G P+ V AC+ ++ V+ ++
Sbjct: 321 WSSMISGYAENGDCSEAMNLLSQMRKEGSEPNSVTLLAVVSACTHSASLKIASTVHSQIL 380
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
KCG M L++N+LID YAKC L +
Sbjct: 381 -------------------KCGFM-----------SHILLSNALIDMYAKCGSLPAAREV 410
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ +KDLVSW++M+ Y L G E + MI+ + + ++ VL+AC
Sbjct: 411 FYELNEKDLVSWSSMINAYGLHGHGSEALEIFK--GMIKAGHEVDGMAFLAVLSACNHAG 468
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
V+ + I ++H+ ++ + ++ I+ R G++ DA
Sbjct: 469 LVEEAQTIFTQAGKYHMPVT--------------------LEHYSCYINLLGRFGKIDDA 508
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPAC 298
++ I +KP+ S+L AC
Sbjct: 509 FEV---TINMPMKPSARIWSSLLSAC 531
>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
Length = 825
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 105/391 (26%), Positives = 170/391 (43%), Gaps = 75/391 (19%)
Query: 7 VHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNVLGY 45
+HA G + AF+GS L++ + WT+M+ Y+
Sbjct: 172 IHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDI 231
Query: 46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP 105
E+ +N F M G +P+ FV V KA L +GK ++ C +
Sbjct: 232 PEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIH-----------GCAVKT 280
Query: 106 LLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWN 165
L D + V +L+D YAKC Y++ + F I D++ W+
Sbjct: 281 LCD-------------------TEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWS 321
Query: 166 AMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL 225
+++ YA E+ + + M+++ + PN SLSGVL ACA V + LG+ IH V+
Sbjct: 322 FLISRYAQSYQNEQAFEMF--LRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVI 379
Query: 226 R----HHIHLSTACGFVICSC-------SVFNQLSTRDVVVWNSIISAFVRSGQVVDALD 274
+ + + A V C +F L + V WN+II + +SG DAL
Sbjct: 380 KLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALS 439
Query: 275 LLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL-----------GTGSFVWNALIDMYG 323
+ +++ A+V VT SVL AC A++ + + V N+LID Y
Sbjct: 440 VFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYA 499
Query: 324 RCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+CG I+ + K+F + ++VSWN +IS Y
Sbjct: 500 KCGCIRDALKVFESIIQCDVVSWNAIISGYA 530
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 145/343 (42%), Gaps = 56/343 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W+ ++ Y E+ +F M+ V P+ F V +AC+ + +G+ +++ +I
Sbjct: 320 WSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVI 379
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ +E + V N+L+D YAKCR ++ S
Sbjct: 380 KLGYE------------------------------SELFVGNALMDVYAKCRNMENSLEI 409
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ + VSWN ++ GY GF E+ ++ EM + ++ S VL ACA
Sbjct: 410 FRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAH--VLSTQVTFSSVLRACANTA 467
Query: 213 GVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+K IH + + + T CG + + VF + DVV WN+IIS
Sbjct: 468 SIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIIS 527
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------- 314
+ G+ DAL+L + ++ KPN VT V++L C + QGL + +
Sbjct: 528 GYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIK 587
Query: 315 -----WNALIDMYGRCGAIQKSRKIFVLMPH-KNLVSWNVMIS 351
+ ++ + GR G + + K +P + + W ++S
Sbjct: 588 PSMDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLS 630
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 78/313 (24%), Positives = 136/313 (43%), Gaps = 52/313 (16%)
Query: 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLF 123
D + C ++ + C D R G+ V+ ++ + G ++
Sbjct: 46 DSYACARLLQRCIARGDARAGRAVHARVVQ------------------RGGVAQL----- 82
Query: 124 EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNL 183
D N L++ YAK L + F + ++++VS+ ++ GYAL G EE L
Sbjct: 83 -----DTFCANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGL 137
Query: 184 LDEMEMIQTDMQPNTISLSGVL-----------AACAQVKGVKLGKAIHGYVLRHHIHLS 232
++ + + N L+ +L C KLG + +V I
Sbjct: 138 FRRLQ--REGHEVNHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFVGSSLIDAY 195
Query: 233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
+ CG V + VF+ + +D V W +++S + + DAL+ + +A KPN +
Sbjct: 196 SLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLT 255
Query: 293 SVLPA--CLKLAALPQGL---------GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK 341
SVL A CL A L +G+ T V AL+DMY +CG I+ +R +F ++PH
Sbjct: 256 SVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHD 315
Query: 342 NLVSWNVMISVYG 354
+++ W+ +IS Y
Sbjct: 316 DVILWSFLISRYA 328
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/321 (20%), Positives = 125/321 (38%), Gaps = 77/321 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++LG Q+H +I G E F+G+ L++V+ +W +++
Sbjct: 368 LDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVG 427
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G+ E+ +++F M V V +AC+ + ++ + F +
Sbjct: 428 YCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNND 487
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V L+D + KCG + +FE I Q
Sbjct: 488 TIVCNSLIDTYAKCGCIRDALKVFE------------------------------SIIQC 517
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSWNA+++GYAL G + L + M ++D +PN ++ +L+ C V G +
Sbjct: 518 DVVSWNAIISGYALHGRATDALELFNRMN--KSDTKPNDVTFVALLSVCGSTGLVNQGLS 575
Query: 220 I-HGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRD 278
+ + + H I S + + I+ R+G++ DAL + D
Sbjct: 576 LFNSMTMDHRIKPS--------------------MDHYTCIVRLLGRAGRLNDALKFIGD 615
Query: 279 VIVANVKPNTVTIVSVLPACL 299
+ P+ + ++L +C+
Sbjct: 616 I---PSTPSPMVWRALLSSCV 633
>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 548
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/373 (25%), Positives = 180/373 (48%), Gaps = 39/373 (10%)
Query: 16 VELCAFLG--SQLLEVFCNWTSM-MGMYNV----LGYYEEIVNLFYL----MIDKGVRPD 64
++ C LG S +F N T + +YN L +N +L ID G+RPD
Sbjct: 63 IDACTSLGLSSYAFSIFSNKTHPDLRLYNTAIKALSKTSSPINAIWLYTRIRID-GLRPD 121
Query: 65 HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFE 124
+ P V KA +L VG+ ++ +S + + V L+ ++ CG + LF+
Sbjct: 122 SYSIPSVLKAVVKLSAVEVGRQIHTQTVSSALDMDVNVATSLIQMYSSCGFVSDARKLFD 181
Query: 125 EMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNL 183
+ +D + N+++ Y K LK + F+++ Q++++SW ++AGYA E L
Sbjct: 182 FVGFKDVALWNAMVAGYVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIEL 241
Query: 184 LDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLS 232
+M++ +++P+ I++ VL+ACA + ++LG+ IH Y+ +H I +
Sbjct: 242 FRKMQL--EEVEPDEIAMLAVLSACADLGALELGEWIHNYIEKHGLCRIVSLYNALIDMY 299
Query: 233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
G + + VF + + V+ W+++I+A G +A+D+ + A V+PN VT V
Sbjct: 300 AKSGNIRRALEVFENMKQKSVITWSTVIAALALHGLGGEAIDMFLRMEKAKVRPNEVTFV 359
Query: 293 SVLPACLKLAALPQG------------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340
++L AC + + G + + +ID+ R G +Q+++K+ MP
Sbjct: 360 AILSACSHVGMVDVGRYYFDQMQSMYKIEPKIEHYGCMIDLLARAGYLQEAQKLLHDMPF 419
Query: 341 K-NLVSWNVMISV 352
+ N + W +++
Sbjct: 420 EANAMIWGSLLAA 432
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 78/157 (49%), Gaps = 13/157 (8%)
Query: 210 QVKGVKLGKAIH--GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
Q+ G L +A+ L I T+ G + S+F+ + D+ ++N+ I A ++
Sbjct: 42 QIHGFMLHRALDQDNLFLSQFIDACTSLGLSSYAFSIFSNKTHPDLRLYNTAIKALSKTS 101
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWN 316
++A+ L + + ++P++ +I SVL A +KL+A+ G L V
Sbjct: 102 SPINAIWLYTRIRIDGLRPDSYSIPSVLKAVVKLSAVEVGRQIHTQTVSSALDMDVNVAT 161
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+LI MY CG + +RK+F + K++ WN M++ Y
Sbjct: 162 SLIQMYSSCGFVSDARKLFDFVGFKDVALWNAMVAGY 198
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/345 (24%), Positives = 167/345 (48%), Gaps = 27/345 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y+ EE + L++ M+ V + + P + KACS + + ++ ++I
Sbjct: 86 WNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHII 145
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSHC 151
+ F LL+++ K G ++ LF+++DQ D + NS+ID Y KC +++++
Sbjct: 146 KMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYE 205
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ + +++++SW +M++G G +E NL M+ ++ + ++L L ACA +
Sbjct: 206 IFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQT--AGIKLDNVALVSTLQACADL 263
Query: 212 KGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSII 260
+ GK IH Y+ +H I + CG + + VF ++ + V VW ++I
Sbjct: 264 GVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMI 323
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GL 308
S + G+ +AL+ + A V+PN +T +L AC + + G
Sbjct: 324 SGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGF 383
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
+ ++D+ GR G ++++ ++ MP K N W +++
Sbjct: 384 KPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNA 428
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 128/308 (41%), Gaps = 62/308 (20%)
Query: 107 LDLFIKCGRMEITSGLFEEMDQ-----DFLVNNSLIDFYAKCRYLKVSHCK--FSKIKQK 159
L L +C ME + +M + D + + L+ F A +++ + F +I +
Sbjct: 22 LHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRP 81
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+ WN M+ GY+ EE LL M+ + N + +L AC+ + + +
Sbjct: 82 NTFMWNTMIRGYSNSKEPEEA--LLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQ 139
Query: 220 IHGYVLR----HHIHLS--------------------------------------TACGF 237
IH ++++ I+ + T CG
Sbjct: 140 IHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGE 199
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ + +FN + R+++ W S+IS V +G+ +AL+L + A +K + V +VS L A
Sbjct: 200 IEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQA 259
Query: 298 CLKLAALPQGLGTGSFVWN-----------ALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
C L L QG +++ LIDMY +CG ++++ ++F M K + W
Sbjct: 260 CADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVW 319
Query: 347 NVMISVYG 354
MIS Y
Sbjct: 320 TAMISGYA 327
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 113/267 (42%), Gaps = 54/267 (20%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ G +E +NLF+ M G++ D+ +AC++L GK ++ Y+
Sbjct: 217 SWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYI 276
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ E + + L+D++ KCG +E +F +M+
Sbjct: 277 KKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKME------------------------ 312
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+K + W AM++GYA+ G E M+M ++PN ++ +G+L AC+
Sbjct: 313 ------EKGVSVWTAMISGYAIHGRGREALEWF--MKMQTAGVEPNQMTFTGILTACSHA 364
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V K + + R H GF + + ++ R+G + +
Sbjct: 365 GLVHEAKLLFESMERIH-------GF------------KPSIEHYGCMVDLLGRAGLLKE 405
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPAC 298
A +L+ ++ VKPN ++L AC
Sbjct: 406 AEELIENM---PVKPNAAIWGALLNAC 429
>gi|218193953|gb|EEC76380.1| hypothetical protein OsI_13992 [Oryza sativa Indica Group]
Length = 822
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/333 (27%), Positives = 152/333 (45%), Gaps = 60/333 (18%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W++M+G Y + G Y +++ L M+++GV PD F+ ++ +AC+ +D +G+ ++ I
Sbjct: 79 WSAMIGAYAIRGMYSDVLALAVTMVEEGVLPDRFLITRILQACAYAEDLELGRALHSMAI 138
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F G +D V NS++ YAKC L +
Sbjct: 139 RRGFMGRV---------------------------KDVPVGNSVLVMYAKCGDLGWARKV 171
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F K+ +DL +WN+M+ GY EE +LLD M Q QP ++ + ++++ A+
Sbjct: 172 FDKMVCRDLGTWNSMIFGYCRSAEWEEARHLLDSMR--QEGTQPGVVTWNTLISSYARFG 229
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
+ + + G + + DVV W S++S FV + +A
Sbjct: 230 DLDVAMELLGQMEESGV--------------------APDVVTWTSLVSGFVHMDRSDEA 269
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGS----FVWNALIDM 321
L + +A V+PN ++I + AC L L Q + GS N+L+DM
Sbjct: 270 LRCFIRMRLAGVEPNGMSIACAISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDM 329
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
Y +CG I + +IF +P K++ SWN MIS Y
Sbjct: 330 YAKCGEIVAAWRIFSGIPDKDIFSWNSMISGYA 362
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 87/382 (22%), Positives = 161/382 (42%), Gaps = 62/382 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WTS++ + + +E + F M GV P+ AC+ LK K+++ + I
Sbjct: 253 WTSLVSGFVHMDRSDEALRCFIRMRLAGVEPNGMSIACAISACASLKLLNQAKELHSHAI 312
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHC 151
+ N L+D++ KCG + +F + D+D NS+I YA+ Y ++
Sbjct: 313 KVGSVNNVLSGNSLVDMYAKCGEIVAAWRIFSGIPDKDIFSWNSMISGYAQAGYCGKAYE 372
Query: 152 KFSKIK----QKDLVSWNAMLAGYALGGFREEVTNLLDEME------------------- 188
F K++ ++++++WN M++GY G E L ME
Sbjct: 373 LFCKMENYGVRRNVITWNTMISGYIRNGDDERAFELFQMMESHGVKRDTATWNILIAGSV 432
Query: 189 ---------MIQTDMQ-----PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS-- 232
I MQ P+ I++ ++ A + + IH + H++ L
Sbjct: 433 HNGYYDRAIRIFRQMQALLRRPDYITILSIIPAFTNLVASWKVREIHACIFHHNLELDGK 492
Query: 233 ---------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283
+ G + +C+VF+ S+R+++ WN II A V G +ALDL +
Sbjct: 493 IANALINAYSKSGNLASACAVFDMHSSRNIISWNCIILAHVLHGSPNEALDLFCQMKQEG 552
Query: 284 VKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN------------ALIDMYGRCGAIQKS 331
V P+ T+V+V+ A + +G T + N A++D+ GR G ++++
Sbjct: 553 VVPDHTTLVTVIKAYGLTGKVSEGSQTFFNMANDYNITPELDHYAAMVDLLGRSGRLKEA 612
Query: 332 RKIFVLMPH-KNLVSWNVMISV 352
++ MP N W+ ++
Sbjct: 613 YELIDEMPLIPNSTVWDTFLTA 634
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 106/242 (43%), Gaps = 44/242 (18%)
Query: 130 FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
F+ LI ++ L + F + ++DL++W+AM+ YA+ G +V L + M
Sbjct: 45 FVAETKLITVHSCAGRLGDAREVFDGMGRRDLLAWSAMIGAYAIRGMYSDVLAL--AVTM 102
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH--------------IHLSTAC 235
++ + P+ ++ +L ACA + ++LG+A+H +R + + C
Sbjct: 103 VEEGVLPDRFLITRILQACAYAEDLELGRALHSMAIRRGFMGRVKDVPVGNSVLVMYAKC 162
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
G + + VF+++ RD+ WNS+I + RS + +A LL + +P VT
Sbjct: 163 GDLGWARKVFDKMVCRDLGTWNSMIFGYCRSAEWEEARHLLDSMRQEGTQPGVVT----- 217
Query: 296 PACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK----NLVSWNVMIS 351
WN LI Y R G + + ++ M ++V+W ++S
Sbjct: 218 -------------------WNTLISSYARFGDLDVAMELLGQMEESGVAPDVVTWTSLVS 258
Query: 352 VY 353
+
Sbjct: 259 GF 260
>gi|255576918|ref|XP_002529344.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531164|gb|EEF33011.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 506
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 162/333 (48%), Gaps = 54/333 (16%)
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+G+ E + FY MID G+ D+FV P KAC L R GK V+ Y++ + +G V
Sbjct: 1 MGFNEIALMGFYEMIDCGLLADNFVVPNALKACGALYWIRFGKGVHGYVVKMGLDGCVFV 60
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L+D++ KCG + +F+ M +QK++V
Sbjct: 61 SSSLIDMYGKCGILMDARKVFDAM------------------------------RQKNVV 90
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH- 221
+WN+M+ GY G E + M + D++ + ++L G L+A A + V GK H
Sbjct: 91 TWNSMIMGYVQNGLYLEAIKVFANMRL--EDIEYSRVTLLGFLSAAANLGAVTEGKQGHA 148
Query: 222 -----GYVLRHHIHLS-----TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
GY L + + S + G + + VF+ ++ +DVV WN +IS++++ V
Sbjct: 149 IAVKGGYELDNILGSSILNFYSKVGLIEDAELVFSNMAEKDVVTWNLLISSYLQCELVEK 208
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALID 320
AL++ + N+K ++VT+ S+L AC + G L + V NA+++
Sbjct: 209 ALNMCHLMRFQNMKFDSVTLDSILSACANTKNIQLGKEAHCYCIRNNLESDVDVANAIVN 268
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
MY +CG+I ++++F +K+L WN++++ Y
Sbjct: 269 MYAKCGSIHDAKEVFNSTMNKDLTLWNMLLTAY 301
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 85/387 (21%), Positives = 165/387 (42%), Gaps = 92/387 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
+ G VH +++ G++ C F+ S L++++ W SM+
Sbjct: 39 IRFGKGVHGYVVKMGLDGCVFVSSSLIDMYGKCGILMDARKVFDAMRQKNVVTWNSMIMG 98
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G Y E + +F M + + A + L GK + I++K
Sbjct: 99 YVQNGLYLEAIKVFANMRLEDIEYSRVTLLGFLSAAANLGAVTEGKQ--GHAIAVK---- 152
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
G E+ D ++ +S+++FY+K ++ + FS + +K
Sbjct: 153 --------------GGYEL----------DNILGSSILNFYSKVGLIEDAELVFSNMAEK 188
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+V+WN +++ Y E+ N+ M +M+ ++++L +L+ACA K ++LGK
Sbjct: 189 DVVTWNLLISSYLQCELVEKALNMCHLMRF--QNMKFDSVTLDSILSACANTKNIQLGKE 246
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
H Y +R++ +++ CG + + VFN +D+ +WN +++A+ + G
Sbjct: 247 AHCYCIRNNLESDVDVANAIVNMYAKCGSIHDAKEVFNSTMNKDLTLWNMLLTAYAQLGL 306
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAI 328
V + L L + + +V PN + WNA+I + R G +
Sbjct: 307 VGETLRLFYQMQLESVPPNVTS------------------------WNAVILGFLRNGQV 342
Query: 329 QKSRKIFVLMP----HKNLVSWNVMIS 351
K++++F M H NLV+ +IS
Sbjct: 343 NKAKELFAEMQAVGIHPNLVTLTTLIS 369
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 120/285 (42%), Gaps = 59/285 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLE-------------VFCN--------WTSMMGMYNV 42
G Q HA + G EL LGS +L VF N W ++ Y
Sbjct: 143 GKQGHAIAVKGGYELDNILGSSILNFYSKVGLIEDAELVFSNMAEKDVVTWNLLISSYLQ 202
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
E+ +N+ +LM + ++ D + AC+ K+ ++GK+ + Y I E + V
Sbjct: 203 CELVEKALNMCHLMRFQNMKFDSVTLDSILSACANTKNIQLGKEAHCYCIRNNLESDVDV 262
Query: 103 KRPLLDLFIKCGRMEITSGLFEE-MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK-- 159
+++++ KCG + +F M++D + N L+ YA+ + + F +++ +
Sbjct: 263 ANAIVNMYAKCGSIHDAKEVFNSTMNKDLTLWNMLLTAYAQLGLVGETLRLFYQMQLESV 322
Query: 160 --DLVSWNAMLAGYALGGFREEVTNLLDEME----------------------------- 188
++ SWNA++ G+ G + L EM+
Sbjct: 323 PPNVTSWNAVILGFLRNGQVNKAKELFAEMQAVGIHPNLVTLTTLISGLIHNGLGNEALA 382
Query: 189 ----MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI 229
M + ++PN S+ ++AC ++ G+AIHGY+LRH +
Sbjct: 383 IFLKMQEYGIRPNITSIINTISACTDPASLQCGRAIHGYILRHDL 427
>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 652
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/358 (23%), Positives = 176/358 (49%), Gaps = 35/358 (9%)
Query: 21 FLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMI-DKGVRPDHFVCPKVYKACSELK 79
F GS + ++ +W +++G Y G E + +F+ M+ D V PD V ++L+
Sbjct: 178 FDGSHVRDLV-SWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLR 236
Query: 80 DYRVGKDVYDYMISIKFEGNACVKRPL---LDLFIKCGRMEITSGLFEEMDQDFLVN-NS 135
D +G+ ++ Y ++ G C R + +D++IKCG +E +FE +D+ +V+ +
Sbjct: 237 DLELGRRLHGY---VESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTT 293
Query: 136 LIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ 195
+I YA+ + + F ++ ++D+ WNA++ GY +E L +M+ + ++
Sbjct: 294 MIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQ--EAMVE 351
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSV 244
P+ I++ +L+AC+Q+ +++G +H Y+ R + LS + CG + + V
Sbjct: 352 PDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRV 411
Query: 245 FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL 304
F ++ ++ + W ++IS G A+ + +I ++P+ +T + VL AC +
Sbjct: 412 FKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVLSACCHAGLV 471
Query: 305 PQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVM 349
+G S + ++ ++D+ GR G + ++ + MP + V W +
Sbjct: 472 KEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEHLVNTMPMEPDAVVWGAL 529
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 153/352 (43%), Gaps = 84/352 (23%)
Query: 53 FYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIK 112
Y + + RPDH P + KAC+ L++ G V ++S+ F
Sbjct: 108 LYCSLLRSARPDHLTFPFLLKACARLQERNYGNAVLGNVLSLGFHA-------------- 153
Query: 113 CGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYA 172
D V N+ + F A C + + F +DLVSWN ++ GY
Sbjct: 154 ----------------DVFVVNAAMHFLAVCSSMAEARKLFDGSHVRDLVSWNTLIGGYV 197
Query: 173 LGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS 232
G E + M + + P+ +++ GV++ AQ++ ++LG+ +HGYV H + +
Sbjct: 198 RRGVPREALEMFWRM-VGDGAVTPDEVTMIGVVSGSAQLRDLELGRRLHGYVESHGVRCT 256
Query: 233 T-----------ACGFVICSCSVF-------------------------------NQLST 250
CG + + SVF +++
Sbjct: 257 VRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPE 316
Query: 251 RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGT 310
RDV WN++++ +V+ + +AL L D+ A V+P+ +T+V++L AC +L AL G+
Sbjct: 317 RDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGALEMGMWV 376
Query: 311 GSFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
++ L+DMY +CG I+K+ ++F +P KN ++W MIS
Sbjct: 377 HHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIPEKNALTWTAMIS 428
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 99/215 (46%), Gaps = 23/215 (10%)
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+NA L +L R VT L + +P+ ++ +L ACA+++ G A+ G
Sbjct: 85 PYNAALRALSLCTDRGLVTRCLPLYCSLLRSARPDHLTFPFLLKACARLQERNYGNAVLG 144
Query: 223 -----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+V+ +H C + + +F+ RD+V WN++I +VR G +
Sbjct: 145 NVLSLGFHADVFVVNAAMHFLAVCSSMAEARKLFDGSHVRDLVSWNTLIGGYVRRGVPRE 204
Query: 272 ALDLL-RDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNALI 319
AL++ R V V P+ VT++ V+ +L L G +V N ++
Sbjct: 205 ALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLELGRRLHGYVESHGVRCTVRLMNVVM 264
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
DMY +CG +++++ +F + K +VSW MI Y
Sbjct: 265 DMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGYA 299
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 125/321 (38%), Gaps = 70/321 (21%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W ++M Y +E + LF+ M + V PD + ACS+L +G V+ Y
Sbjct: 322 WNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHY-- 379
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ R + L + G +L+D Y+KC ++ +
Sbjct: 380 ---------IDRRRVSLSVMLG-------------------TNLVDMYSKCGNIEKAIRV 411
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F +I +K+ ++W AM++G A G + M I+ +QP+ I+ GVL+AC
Sbjct: 412 FKEIPEKNALTWTAMISGLANHGHADVAIKYFQRM--IELGLQPDEITFIGVLSACCHAG 469
Query: 213 GVKLGKAIHGYV---------LRHH---IHLSTACGFVICSCSVFNQLSTR-DVVVWNSI 259
VK G+ + ++H+ + L G++ + + N + D VVW ++
Sbjct: 470 LVKEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEHLVNTMPMEPDAVVWGAL 529
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALI 319
A G + A +KL L G S ++ L
Sbjct: 530 FFACRMHGNITLGEK----------------------AAMKLVELDPG---DSGIYVLLA 564
Query: 320 DMYGRCGAIQKSRKIFVLMPH 340
+MY +K+ K+ V+M H
Sbjct: 565 NMYAEANMRKKADKVRVMMRH 585
>gi|255553939|ref|XP_002518010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542992|gb|EEF44528.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 824
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 154/322 (47%), Gaps = 59/322 (18%)
Query: 61 VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITS 120
V+P + C+ ++D VGK + YMI E + V L+ ++ KCG +
Sbjct: 73 VKPTSVTAAVILPVCARMRDIYVGKSFHCYMIKTGMETHTLVGNALVSMYAKCGLVS--- 129
Query: 121 GLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEV 180
D YA F I KD+VSWNA++AG++ +
Sbjct: 130 ----------------YDAYA----------AFQSIYHKDVVSWNAIIAGFSENKMVDSA 163
Query: 181 TNLLDEMEMIQTDMQPNTISLSGV---LAACAQVKGVKLGKAIHGYVLRHHIHLS--TAC 235
L M++T ++PN +++ V LA+ A G+ IH Y+LRH+ L+ + C
Sbjct: 164 LRLF--FFMLKTQIKPNHATIATVLPLLASLATDTAYLFGREIHCYILRHNESLADVSVC 221
Query: 236 ----------GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI-VANV 284
G V + +F ++ RD++ WN+IIS F +G+ +L+L ++++ + +
Sbjct: 222 NALLSFHLMVGRVKEAELLFRRMELRDLISWNAIISGFASNGEWSKSLELFQELLYLESN 281
Query: 285 KPNTVTIVSVLPACLKLAALPQGLGTGSFVW------------NALIDMYGRCGAIQKSR 332
+P++VT+VS+LPAC +L L G S+V NAL+ Y +C + +
Sbjct: 282 EPDSVTLVSILPACAQLQNLKAGREIHSYVLRHPYLYQDTSVGNALVSFYAKCNNLVAAY 341
Query: 333 KIFVLMPHKNLVSWNVMISVYG 354
F+++P ++L+SWN M+ +
Sbjct: 342 HTFLMIPSRDLISWNSMLDAFA 363
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/403 (22%), Positives = 188/403 (46%), Gaps = 82/403 (20%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFC----------------------NWTSMMGMY 40
+G H ++I G+E +G+ L+ ++ +W +++ +
Sbjct: 95 VGKSFHCYMIKTGMETHTLVGNALVSMYAKCGLVSYDAYAAFQSIYHKDVVSWNAIIAGF 154
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD---YRVGKDVYDYMISIKFE 97
+ + + LF+ M+ ++P+H V + L Y G++++ Y++
Sbjct: 155 SENKMVDSALRLFFFMLKTQIKPNHATIATVLPLLASLATDTAYLFGREIHCYILR---- 210
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
E D V N+L+ F+ +K + F +++
Sbjct: 211 -------------------------HNESLADVSVCNALLSFHLMVGRVKEAELLFRRME 245
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+DL+SWNA+++G+A G + L E+ ++++ +P++++L +L ACAQ++ +K G
Sbjct: 246 LRDLISWNAIISGFASNGEWSKSLELFQELLYLESN-EPDSVTLVSILPACAQLQNLKAG 304
Query: 218 KAIHGYVLRH-HIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSIISAFVR 265
+ IH YVLRH +++ T+ C ++ + F + +RD++ WNS++ AF
Sbjct: 305 REIHSYVLRHPYLYQDTSVGNALVSFYAKCNNLVAAYHTFLMIPSRDLISWNSMLDAFAI 364
Query: 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC---LKLAALPQ--------GLGTGSF- 313
G+ LL + ++P+++TI+++L C LK+ + + GL F
Sbjct: 365 GGRNAQFFKLLHWMHTEGIRPDSITILTILHFCANVLKVDKVKETHCYSLRCGLLQSDFE 424
Query: 314 --VWNALIDMYGRCGAIQKSRKIF-VLMPHKNLVSWNVMISVY 353
NA++D Y +C ++ + K+F L ++NLV++N MIS Y
Sbjct: 425 PTTRNAMLDTYAKCSNVEYAFKVFQTLSDNRNLVTFNSMISGY 467
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 148/316 (46%), Gaps = 17/316 (5%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ + + G + L + M +G+RPD + C+ + K+ + Y
Sbjct: 354 SWNSMLDAFAIGGRNAQFFKLLHWMHTEGIRPDSITILTILHFCANVLKVDKVKETHCYS 413
Query: 92 IS---IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM--DQDFLVNNSLIDFYAKCRYL 146
+ ++ + + +LD + KC +E +F+ + +++ + NS+I Y C
Sbjct: 414 LRCGLLQSDFEPTTRNAMLDTYAKCSNVEYAFKVFQTLSDNRNLVTFNSMISGYVNCGLY 473
Query: 147 KVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
++ F K+ DL +WN M+ G A ++ +L E++ M+P+ +++ +L
Sbjct: 474 DDAYMIFEKMPASDLTTWNLMVRGCAENDCPDQAFSLFRELQ--ARGMKPDAVTIISLLP 531
Query: 207 ACAQVKGVKLGKAIHGYVLR---HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVW 256
+CAQ V L K HGYV+R HL A CG + + +F+ RD+VV+
Sbjct: 532 SCAQTASVHLMKQCHGYVIRACFDDAHLEGALLDLYAKCGDLGYAFKLFHSNPGRDLVVF 591
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN 316
+++ + G +AL + D++ +KP+ + I +VL AC + +GL +
Sbjct: 592 TAMVGGYAMHGMGEEALRIFSDMLDLGIKPDHIVITAVLSACCHAGLVDEGLKIFHSIEK 651
Query: 317 ALIDMYGRCGAIQKSR 332
+ ++ A+ KSR
Sbjct: 652 GINEIQAGRDALSKSR 667
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 103/403 (25%), Positives = 176/403 (43%), Gaps = 89/403 (22%)
Query: 10 HLIVCGVELCAFLGSQL-LEVFCNWTSMMGMYNVLGYYEEIVNLFY-LMIDKGVRPDHFV 67
HL+V V+ L ++ L +W +++ + G + + + LF L+ + PD
Sbjct: 228 HLMVGRVKEAELLFRRMELRDLISWNAIISGFASNGEWSKSLELFQELLYLESNEPDSVT 287
Query: 68 CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD 127
+ AC++L++ + G++++ Y++ + P L
Sbjct: 288 LVSILPACAQLQNLKAGREIHSYVL----------RHPYLY------------------- 318
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
QD V N+L+ FYAKC L ++ F I +DL+SWN+ML +A+GG + LL M
Sbjct: 319 QDTSVGNALVSFYAKCNNLVAAYHTFLMIPSRDLISWNSMLDAFAIGGRNAQFFKLLHWM 378
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR------------HHIHLST-- 233
++P++I++ +L CA V V K H Y LR + L T
Sbjct: 379 H--TEGIRPDSITILTILHFCANVLKVDKVKETHCYSLRCGLLQSDFEPTTRNAMLDTYA 436
Query: 234 ACGFVICSCSVFNQLS-TRDVVVWNSIISAFVRSGQVVDA-------------------- 272
C V + VF LS R++V +NS+IS +V G DA
Sbjct: 437 KCSNVEYAFKVFQTLSDNRNLVTFNSMISGYVNCGLYDDAYMIFEKMPASDLTTWNLMVR 496
Query: 273 -----------LDLLRDVIVANVKPNTVTIVSVLPACLKLAA---LPQGLG-------TG 311
L R++ +KP+ VTI+S+LP+C + A+ + Q G
Sbjct: 497 GCAENDCPDQAFSLFRELQARGMKPDAVTIISLLPSCAQTASVHLMKQCHGYVIRACFDD 556
Query: 312 SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + AL+D+Y +CG + + K+F P ++LV + M+ Y
Sbjct: 557 AHLEGALLDLYAKCGDLGYAFKLFHSNPGRDLVVFTAMVGGYA 599
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 113/247 (45%), Gaps = 31/247 (12%)
Query: 138 DFYAKCRYLKVSHCKFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ 195
+ YAKC S+ F +I D + WN +L+G+A + T + ++
Sbjct: 15 NMYAKCGAFSDSNKLFGEISNCSHDPIFWNILLSGFAASPIHDAQTFSFFNRMRVANQVK 74
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSC------------S 243
P +++ + +L CA+++ + +GK+ H Y+++ + T G + S +
Sbjct: 75 PTSVTAAVILPVCARMRDIYVGKSFHCYMIKTGMETHTLVGNALVSMYAKCGLVSYDAYA 134
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
F + +DVV WN+II+ F + V AL L ++ +KPN TI +VLP LA
Sbjct: 135 AFQSIYHKDVVSWNAIIAGFSENKMVDSALRLFFFMLKTQIKPNHATIATVLPLLASLAT 194
Query: 304 LP----------------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
+ L S V NAL+ + G ++++ +F M ++L+SWN
Sbjct: 195 DTAYLFGREIHCYILRHNESLADVS-VCNALLSFHLMVGRVKEAELLFRRMELRDLISWN 253
Query: 348 VMISVYG 354
+IS +
Sbjct: 254 AIISGFA 260
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/345 (24%), Positives = 167/345 (48%), Gaps = 27/345 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y+ EE + L++ M+ V + + P + KACS + + ++ ++I
Sbjct: 86 WNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHII 145
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSHC 151
+ F LL+++ K G ++ LF+++DQ D + NS+ID Y KC +++++
Sbjct: 146 KMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYE 205
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ + +++++SW +M++G G +E NL M+ ++ + ++L L ACA +
Sbjct: 206 IFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQT--AGIKLDNVALVSTLQACADL 263
Query: 212 KGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSII 260
+ GK IH Y+ +H I + CG + + VF ++ + V VW ++I
Sbjct: 264 GVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMI 323
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GL 308
S + G+ +AL+ + A V+PN +T +L AC + + G
Sbjct: 324 SGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGF 383
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
+ ++D+ GR G ++++ ++ MP K N W +++
Sbjct: 384 KPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNA 428
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 129/308 (41%), Gaps = 62/308 (20%)
Query: 107 LDLFIKCGRMEITSGLFEEMDQ-----DFLVNNSLIDFYAKCRYLKVSHCK--FSKIKQK 159
L L +C ME + +M + D + + L+ F A +++ + F +I +
Sbjct: 22 LHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRP 81
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+ WN M+ GY+ EE LL M+ + N + +L AC+ + ++ +
Sbjct: 82 NTFMWNTMIRGYSNSKEPEEA--LLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQ 139
Query: 220 IHGYVLR----HHIHLS--------------------------------------TACGF 237
IH ++++ I+ + T CG
Sbjct: 140 IHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGE 199
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ + +FN + R+++ W S+IS V +G+ +AL+L + A +K + V +VS L A
Sbjct: 200 IEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQA 259
Query: 298 CLKLAALPQGLGTGSFVWN-----------ALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
C L L QG +++ LIDMY +CG ++++ ++F M K + W
Sbjct: 260 CADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVW 319
Query: 347 NVMISVYG 354
MIS Y
Sbjct: 320 TAMISGYA 327
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 113/267 (42%), Gaps = 54/267 (20%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ G +E +NLF+ M G++ D+ +AC++L GK ++ Y+
Sbjct: 217 SWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYI 276
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ E + + L+D++ KCG +E +F +M+
Sbjct: 277 KKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKME------------------------ 312
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+K + W AM++GYA+ G E M+M ++PN ++ +G+L AC+
Sbjct: 313 ------EKGVSVWTAMISGYAIHGRGREALEWF--MKMQTAGVEPNQMTFTGILTACSHA 364
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V K + + R H GF + + ++ R+G + +
Sbjct: 365 GLVHEAKLLFESMERIH-------GF------------KPSIEHYGCMVDLLGRAGLLKE 405
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPAC 298
A +L+ ++ VKPN ++L AC
Sbjct: 406 AEELIENM---PVKPNAAIWGALLNAC 429
>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 970
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 158/346 (45%), Gaps = 57/346 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-GVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
W +++ Y+ Y+E++ F MI + PDHF P V KAC+ + D +G V+
Sbjct: 153 QWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHG- 211
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
L +K G +E D V N+L+ FY ++ +
Sbjct: 212 ------------------LVVKTGLVE-----------DVFVGNALVSFYGTHGFVTDAL 242
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD--MQPNTISLSGVLAAC 208
F + +++LVSWN+M+ ++ GF EE LL EM D P+ +L VL C
Sbjct: 243 QLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVC 302
Query: 209 AQVKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWN 257
A+ + + LGK +HG+ ++ + + + CG + + +F + ++VV WN
Sbjct: 303 AREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWN 362
Query: 258 SIISAFVRSGQVVDALDLLRDVIVA--NVKPNTVTIVSVLPACLKLAALP---------- 305
+++ F G D+LR ++ +VK + VTI++ +P C + LP
Sbjct: 363 TMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSL 422
Query: 306 -QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
Q V NA + Y +CG++ ++++F + K + SWN +I
Sbjct: 423 KQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALI 468
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 140/255 (54%), Gaps = 24/255 (9%)
Query: 122 LFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVT 181
L +E + LV N+ + YAKC L + F I+ K + SWNA++ G+A +
Sbjct: 422 LKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSN--DPRL 479
Query: 182 NLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH------HIHLSTAC 235
+L ++M + + P++ ++ +L+AC+++K ++LGK +HG+++R+ ++LS
Sbjct: 480 SLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLS 539
Query: 236 GFVICS--CSV---FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
++ C C+V F+ + + +V WN++I+ ++++G AL + R +++ ++ ++
Sbjct: 540 LYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGIS 599
Query: 291 IVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
++ V AC L +L G L +F+ +LIDMY + G+I +S K+F +
Sbjct: 600 MMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLK 659
Query: 340 HKNLVSWNVMISVYG 354
K+ SWN MI YG
Sbjct: 660 EKSTASWNAMIMGYG 674
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 133/270 (49%), Gaps = 34/270 (12%)
Query: 111 IKCGRM--EITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAML 168
I+ GR ++ SG + D L +I YA C S F ++ K+L WNA++
Sbjct: 100 IEMGRKIHQLVSGSTRLRNDDVLCTR-IITMYAMCGSPDDSRFVFDALRSKNLFQWNAVI 158
Query: 169 AGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-- 226
+ Y+ +EV EM + TD+ P+ + V+ ACA + V +G A+HG V++
Sbjct: 159 SSYSRNELYDEVLETFIEM-ISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTG 217
Query: 227 --HHIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLR 277
+ + A GFV + +F+ + R++V WNS+I F +G ++ LL
Sbjct: 218 LVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLG 277
Query: 278 DVIVAN----VKPNTVTIVSVLPACLKLAALPQGLGTGSFVW-------------NALID 320
+++ N P+ T+V+VLP C + + GLG G W NAL+D
Sbjct: 278 EMMEENGDGAFMPDVATLVTVLPVCAREREI--GLGKGVHGWAVKLRLDKELVLNNALMD 335
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
MY +CG I ++ IF + +KN+VSWN M+
Sbjct: 336 MYSKCGCITNAQMIFKMNNNKNVVSWNTMV 365
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 85/398 (21%), Positives = 169/398 (42%), Gaps = 77/398 (19%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYN 41
+G+ VH ++ G+ F+G+ L+ + +W SM+ +++
Sbjct: 205 IGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFS 264
Query: 42 VLGYYEEIVNLFYLMI----DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
G+ EE L M+ D PD V C+ ++ +GK V+ + + ++
Sbjct: 265 DNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLR-- 322
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
+D++ ++NN+L+D Y+KC + + F
Sbjct: 323 ----------------------------LDKELVLNNALMDMYSKCGCITNAQMIFKMNN 354
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
K++VSWN M+ G++ G ++L +M D++ + +++ + C +
Sbjct: 355 NKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSL 414
Query: 218 KAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
K +H Y L+ + CG + + VF+ + ++ V WN++I +S
Sbjct: 415 KELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQS 474
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVW 315
+LD + ++ + P++ T+ S+L AC KL +L G L FV+
Sbjct: 475 NDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVY 534
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+++ +Y CG + + +F M K+LVSWN +I+ Y
Sbjct: 535 LSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGY 572
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 127/298 (42%), Gaps = 55/298 (18%)
Query: 60 GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEIT 119
G+ PD F + ACS+LK R+GK+V+ ++I E + V +L L+I CG +
Sbjct: 491 GLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTV 550
Query: 120 SGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREE 179
LF+ M+ K LVSWN ++ GY GF +
Sbjct: 551 QALFDAMED------------------------------KSLVSWNTVITGYLQNGFPDR 580
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST--AC-- 235
+ +M+ +Q IS+ V AC+ + ++LG+ H Y L+H + AC
Sbjct: 581 ALGVF--RQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSL 638
Query: 236 -------GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288
G + S VFN L + WN++I + G +A+ L ++ P+
Sbjct: 639 IDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDD 698
Query: 289 VTIVSVLPACLKLAALPQGLG-----TGSF-------VWNALIDMYGRCGAIQKSRKI 334
+T + VL AC + +GL SF + +IDM GR G + K+ ++
Sbjct: 699 LTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRV 756
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 24/178 (13%)
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYV-----LRHH-------IHLSTACGFVICSCSVFNQ 247
+L +L A + K +++G+ IH V LR+ I + CG S VF+
Sbjct: 86 ALGLLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDA 145
Query: 248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVLPACLKLAALPQ 306
L ++++ WN++IS++ R+ + L+ ++I ++ P+ T V+ AC ++ +
Sbjct: 146 LRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGI 205
Query: 307 GLG-------TG----SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
GL TG FV NAL+ YG G + + ++F +MP +NLVSWN MI V+
Sbjct: 206 GLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVF 263
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 89/200 (44%), Gaps = 36/200 (18%)
Query: 12 IVCGVELC---AFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVC 68
I CG ELC A + + +W +++ Y G+ + + +F M+ G++
Sbjct: 542 IHCG-ELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISM 600
Query: 69 PKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ 128
V+ ACS L R+G++ + Y + E +A FI C
Sbjct: 601 MPVFGACSLLPSLRLGREAHAYALKHLLEDDA---------FIAC--------------- 636
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
SLID YAK + S F+ +K+K SWNAM+ GY + G +E L +EM+
Sbjct: 637 ------SLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQ 690
Query: 189 MIQTDMQPNTISLSGVLAAC 208
+T P+ ++ GVL AC
Sbjct: 691 --RTGHNPDDLTFLGVLTAC 708
>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
Length = 713
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/384 (26%), Positives = 176/384 (45%), Gaps = 55/384 (14%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSM---------MGMYNVLGYYEEIVNLFY 54
G +H + + G+ F+GS LL+++ + M M NV+ + I L
Sbjct: 135 GELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGL-- 192
Query: 55 LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG 114
VR + VY SE+ RV D Y + I++K AC L+ G
Sbjct: 193 ------VRAGYNKEALVY--FSEMWRSRVEYDSYTFAIALK----ACADSGALNY----G 236
Query: 115 RMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALG 174
R + + D V N+L Y KC L+ F K+ +D+VSW ++
Sbjct: 237 REIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQM 296
Query: 175 GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA 234
G E + M ++D+ PN + + V++ CA + ++ G+ +H +L H+ L+ +
Sbjct: 297 GQEECAVQAF--IRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALIL--HLGLAAS 352
Query: 235 -------------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281
CG + S +F++++ RD+V W++II+ + + G V +A +LL + +
Sbjct: 353 LSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRM 412
Query: 282 ANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQK 330
KP + SVL AC +A L GL + V +ALI+MY +CG+I++
Sbjct: 413 EGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEE 472
Query: 331 SRKIFVLMPHKNLVSWNVMISVYG 354
+ +IF + ++VSW MI+ Y
Sbjct: 473 ASRIFDAAENDDIVSWTAMINGYA 496
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 152/345 (44%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+WT+++ Y E + LF M ++ G+R D F+ +KAC D G+ ++ Y
Sbjct: 82 SWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGY 141
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ + V LLD++ K G++ +F EM
Sbjct: 142 AVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEM------------------------ 177
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+++VSW A++ G G+ +E L+ EM ++ ++ ++ + + L ACA
Sbjct: 178 ------PMRNVVSWTAIITGLVRAGYNKEA--LVYFSEMWRSRVEYDSYTFAIALKACAD 229
Query: 211 VKGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSI 259
+ G+ IH ++ +S+ CG + ++F ++S RDVV W +I
Sbjct: 230 SGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTI 289
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGL 308
I+ V+ GQ A+ + ++V PN T +V+ C LA L GL
Sbjct: 290 ITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGL 349
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V N+++ MY +CG + S IF M +++VSW+ +I+ Y
Sbjct: 350 AASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGY 394
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/395 (21%), Positives = 162/395 (41%), Gaps = 77/395 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
+ G ++HA + G ++ +F+ + L ++ +WT+++
Sbjct: 233 LNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITT 292
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+G E V F M + V P+ + V C+ L G+ ++ ++ + +
Sbjct: 293 LVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAAS 352
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V+ NS++ YAKC L S F ++ ++
Sbjct: 353 LSVE------------------------------NSIMTMYAKCGQLTSSSVIFHEMTRR 382
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSW+ ++AGY GG E LL M M +P +L+ VL+AC + ++ GK
Sbjct: 383 DIVSWSTIIAGYXQGGHVSEAFELLSWMRM--EGPKPTEFALASVLSACGNMAILEHGKQ 440
Query: 220 IHGYVLR---HH--------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H YVL H I++ CG + + +F+ D+V W ++I+ + G
Sbjct: 441 LHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGY 500
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWN 316
+ +DL + ++P++VT + VL AC + G + +
Sbjct: 501 SREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSKEHYG 560
Query: 317 ALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ID+ R G + + + MP H++ V W+ ++
Sbjct: 561 CMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLL 595
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 110/246 (44%), Gaps = 23/246 (9%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D +N + K +L + F K+ QKD +SW +++GY E L M
Sbjct: 48 DLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMR 107
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGF 237
+++ ++ + LS AC V G+ +HGY ++ + + T G
Sbjct: 108 -VESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGK 166
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ VF+++ R+VV W +II+ VR+G +AL ++ + V+ ++ T L A
Sbjct: 167 IFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKA 226
Query: 298 C-----------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
C + A+ +G SFV N L MY +CG ++ +F M +++VSW
Sbjct: 227 CADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSW 286
Query: 347 NVMISV 352
+I+
Sbjct: 287 TTIITT 292
>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840 [Vitis vinifera]
Length = 713
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/384 (26%), Positives = 176/384 (45%), Gaps = 55/384 (14%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSM---------MGMYNVLGYYEEIVNLFY 54
G +H + + G+ F+GS LL+++ + M M NV+ + I L
Sbjct: 135 GELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGL-- 192
Query: 55 LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG 114
VR + VY SE+ RV D Y + I++K AC L+ G
Sbjct: 193 ------VRAGYNKEALVY--FSEMWRSRVEYDSYTFAIALK----ACADSGALNY----G 236
Query: 115 RMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALG 174
R + + D V N+L Y KC L+ F K+ +D+VSW ++
Sbjct: 237 REIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQM 296
Query: 175 GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA 234
G E + M ++D+ PN + + V++ CA + ++ G+ +H +L H+ L+ +
Sbjct: 297 GQEECAVQAF--IRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALIL--HLGLAAS 352
Query: 235 -------------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281
CG + S +F++++ RD+V W++II+ + + G V +A +LL + +
Sbjct: 353 LSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRM 412
Query: 282 ANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQK 330
KP + SVL AC +A L GL + V +ALI+MY +CG+I++
Sbjct: 413 EGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEE 472
Query: 331 SRKIFVLMPHKNLVSWNVMISVYG 354
+ +IF + ++VSW MI+ Y
Sbjct: 473 ASRIFDAAENDDIVSWTAMINGYA 496
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 152/345 (44%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+WT+++ Y E + LF M ++ G+R D F+ +KAC D G+ ++ Y
Sbjct: 82 SWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGY 141
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ + V LLD++ K G++ +F EM
Sbjct: 142 AVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEM------------------------ 177
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+++VSW A++ G G+ +E L+ EM ++ ++ ++ + + L ACA
Sbjct: 178 ------PMRNVVSWTAIITGLVRAGYNKEA--LVYFSEMWRSRVEYDSYTFAIALKACAD 229
Query: 211 VKGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSI 259
+ G+ IH ++ +S+ CG + ++F ++S RDVV W +I
Sbjct: 230 SGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTI 289
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGL 308
I+ V+ GQ A+ + ++V PN T +V+ C LA L GL
Sbjct: 290 ITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGL 349
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V N+++ MY +CG + S IF M +++VSW+ +I+ Y
Sbjct: 350 AASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGY 394
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 84/395 (21%), Positives = 163/395 (41%), Gaps = 77/395 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
+ G ++HA + G ++ +F+ + L ++ +WT+++
Sbjct: 233 LNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITT 292
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+G E V F M + V P+ + V C+ L G+ ++ ++ + +
Sbjct: 293 LVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAAS 352
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V+ NS++ YAKC L S F ++ ++
Sbjct: 353 LSVE------------------------------NSIMTMYAKCGQLTSSSVIFHEMTRR 382
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSW+ ++AGY+ GG E LL M M +P +L+ VL+AC + ++ GK
Sbjct: 383 DIVSWSTIIAGYSQGGHVSEAFELLSWMRM--EGPKPTEFALASVLSACGNMAILEHGKQ 440
Query: 220 IHGYVLR---HH--------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H YVL H I++ CG + + +F+ D+V W ++I+ + G
Sbjct: 441 LHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGY 500
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWN 316
+ +DL + ++P++VT + VL AC + G + +
Sbjct: 501 SREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYG 560
Query: 317 ALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ID+ R G + + + MP H++ V W+ ++
Sbjct: 561 CMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLL 595
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 110/246 (44%), Gaps = 23/246 (9%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D +N + K +L + F K+ QKD +SW +++GY E L M
Sbjct: 48 DLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMR 107
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGF 237
+++ ++ + LS AC V G+ +HGY ++ + + T G
Sbjct: 108 -VESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGK 166
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ VF+++ R+VV W +II+ VR+G +AL ++ + V+ ++ T L A
Sbjct: 167 IFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKA 226
Query: 298 C-----------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
C + A+ +G SFV N L MY +CG ++ +F M +++VSW
Sbjct: 227 CADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSW 286
Query: 347 NVMISV 352
+I+
Sbjct: 287 TTIITT 292
>gi|38345134|emb|CAE02724.2| OSJNBa0055H05.11 [Oryza sativa Japonica Group]
gi|215697200|dbj|BAG91194.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 408
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 137/259 (52%), Gaps = 14/259 (5%)
Query: 61 VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITS 120
V PD + V C+ ++ R GK ++ YM+ +A V L++++ C ME+
Sbjct: 6 VVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCADMEMAE 65
Query: 121 GLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREE 179
L+ + +++ +++ +++ YAK ++++H F+ + KD+VSW+AM+AGYA E
Sbjct: 66 KLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPME 125
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----------- 228
NL +M+ ++ ++P+ I++ V++ACA V ++ + IH +V H
Sbjct: 126 ALNLFHDMQ--RSGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPIGNAL 183
Query: 229 IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288
I + + CG + + VFN + ++VV W SII+A G AL L ++ ++PN
Sbjct: 184 IDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNG 243
Query: 289 VTIVSVLPACLKLAALPQG 307
VT + +L AC + +G
Sbjct: 244 VTFLGLLYACCHAGLVEEG 262
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 105/217 (48%), Gaps = 53/217 (24%)
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL----------------------- 225
M ++ + P+ + ++ VL+ CA + ++ GKAIH Y+L
Sbjct: 1 MKRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCAD 60
Query: 226 ------------RHHIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
I LST G V + S+FN + +DVV W+++I+ + S
Sbjct: 61 MEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAES 120
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------W 315
+ ++AL+L D+ + VKP+ +T++SV+ AC + AL + SFV
Sbjct: 121 SKPMEALNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPIG 180
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
NALIDM+ +CG++ + +F MP KN+V+W +I+
Sbjct: 181 NALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITA 217
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 63/307 (20%), Positives = 119/307 (38%), Gaps = 76/307 (24%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY- 90
+W++M+ Y E +NLF+ M GV+PD V AC+ + + ++ +
Sbjct: 109 SWSAMIAGYAESSKPMEALNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIHSFV 168
Query: 91 ----MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL 146
M I GNA L+D+F KCG + + +F M
Sbjct: 169 ENHSMCKILPIGNA-----LIDMFSKCGSLTLALDVFNAM-------------------- 203
Query: 147 KVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
QK++V+W +++ A+ G L + M+ +QPN ++ G+L
Sbjct: 204 ----------PQKNVVTWTSIITASAMHGDGRSALTLFENMK--SEGIQPNGVTFLGLLY 251
Query: 207 ACAQVKGVKLGKAIHGYVLRHH----IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISA 262
AC V+ G+ + +++ + +H C ++
Sbjct: 252 ACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGC-----------------------MVDL 288
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMY 322
R+ + A DL++ + +++PN V S+L AC + L G+F ++++
Sbjct: 289 LGRAKLLGQAADLIQSM---HLRPNVVIWGSLLAAC----RMHGDLELGTFAAKKILELD 341
Query: 323 GRCGAIQ 329
G Q
Sbjct: 342 PNHGGAQ 348
>gi|30103011|gb|AAP21424.1| putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
gi|222626012|gb|EEE60144.1| hypothetical protein OsJ_13038 [Oryza sativa Japonica Group]
gi|374087691|gb|AEY82646.1| chloroplast ALBL [Oryza sativa Japonica Group]
Length = 859
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/333 (27%), Positives = 152/333 (45%), Gaps = 60/333 (18%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W++M+G Y + G Y +++ L M+++GV PD F+ ++ +AC+ +D +G+ ++ I
Sbjct: 116 WSAMIGAYAIRGMYSDVLALAVTMVEEGVLPDRFLITRILQACAYAEDLELGRALHSMAI 175
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F G +D V NS++ YAKC L +
Sbjct: 176 RRGFMGRV---------------------------KDVPVGNSVLVMYAKCGDLGWARKV 208
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F K+ +DL +WN+M+ GY EE +LLD M Q QP ++ + ++++ A+
Sbjct: 209 FDKMVCRDLGTWNSMIFGYCRSAEWEEARHLLDSMR--QEGTQPGVVTWNTLISSYARFG 266
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
+ + + G + + DVV W S++S FV + +A
Sbjct: 267 DLDVAMELLGQMEESGV--------------------APDVVTWTSLVSGFVHMDRSDEA 306
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGS----FVWNALIDM 321
L + +A V+PN ++I + AC L L Q + GS N+L+DM
Sbjct: 307 LRCFIRMRLAGVEPNGMSIACAISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDM 366
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
Y +CG I + +IF +P K++ SWN MIS Y
Sbjct: 367 YAKCGEIVAAWRIFSGIPDKDIFSWNSMISGYA 399
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/383 (22%), Positives = 161/383 (42%), Gaps = 62/383 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WTS++ + + +E + F M GV P+ AC+ LK K+++ +
Sbjct: 289 TWTSLVSGFVHMDRSDEALRCFIRMRLAGVEPNGMSIACAISACASLKLLNQAKELHSHA 348
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSH 150
I + N L+D++ KCG + +F + D+D NS+I YA+ Y ++
Sbjct: 349 IKVGSVNNVLSGNSLVDMYAKCGEIVAAWRIFSGIPDKDIFSWNSMISGYAQAGYCGKAY 408
Query: 151 CKFSKIK----QKDLVSWNAMLAGYALGGFREEVTNLLDEME------------------ 188
F K++ ++++++WN M++GY G E L ME
Sbjct: 409 ELFCKMENYGVRRNVITWNTMISGYIRNGDDERAFELFQMMESHGVKRDTATWNILIAGS 468
Query: 189 ----------MIQTDMQ-----PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS- 232
I MQ P+ I++ ++ A + + IH + H++ L
Sbjct: 469 VHNGYYDRAIRIFRQMQALLRRPDYITILSIIPAFTNLVASWKVREIHACIFHHNLELDG 528
Query: 233 ----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
+ G + +C+VF+ S+R+++ WN II A V G +ALDL +
Sbjct: 529 KIANALINAYSKSGNLASACAVFDMHSSRNIISWNCIILAHVLHGSPNEALDLFCQMKQE 588
Query: 283 NVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN------------ALIDMYGRCGAIQK 330
V P+ T+V+V+ A + +G T + N A++D+ GR G +++
Sbjct: 589 GVVPDHTTLVTVIKAYGLTGKVSEGSQTFFNMANDYNITPELDHYAAMVDLLGRSGRLKE 648
Query: 331 SRKIFVLMPH-KNLVSWNVMISV 352
+ ++ MP N W+ ++
Sbjct: 649 AYELIDEMPLIPNSTVWDTFLTA 671
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 105/242 (43%), Gaps = 44/242 (18%)
Query: 130 FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
F+ LI ++ L + F + ++DL++W+AM+ YA+ G +V L + M
Sbjct: 82 FVAETKLITVHSCAGRLGDAREVFDGMGRRDLLAWSAMIGAYAIRGMYSDVLAL--AVTM 139
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH--------------LSTAC 235
++ + P+ ++ +L ACA + ++LG+A+H +R + C
Sbjct: 140 VEEGVLPDRFLITRILQACAYAEDLELGRALHSMAIRRGFMGRVKDVPVGNSVLVMYAKC 199
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
G + + VF+++ RD+ WNS+I + RS + +A LL + +P VT
Sbjct: 200 GDLGWARKVFDKMVCRDLGTWNSMIFGYCRSAEWEEARHLLDSMRQEGTQPGVVT----- 254
Query: 296 PACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK----NLVSWNVMIS 351
WN LI Y R G + + ++ M ++V+W ++S
Sbjct: 255 -------------------WNTLISSYARFGDLDVAMELLGQMEESGVAPDVVTWTSLVS 295
Query: 352 VY 353
+
Sbjct: 296 GF 297
>gi|347954464|gb|AEP33732.1| chlororespiratory reduction 21, partial [Draba nemorosa]
Length = 829
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 162/345 (46%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++G+ +G E + F M++ G+ PD+FV P V KAC L+ R G+ V+ Y+
Sbjct: 135 SWAAIIGVRCRIGLVEGALMGFVEMLENGLFPDNFVVPNVCKACGALQWSRFGRGVHGYV 194
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ CV V +SL D Y KC L +
Sbjct: 195 AKAGL--HDCV----------------------------FVASSLADMYGKCGLLDDARK 224
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I + +V+WNA++ GY G +E LL M ++P +++S L+A A +
Sbjct: 225 VFDEIPDRTVVAWNALMVGYVQNGMNQEAIRLLSAMR--NEGIEPTRVTVSTCLSASANM 282
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICS--CSV---------FNQLSTRDVVVWNSII 260
G++ GK H + + + L G I + C V F+++ +DVV WN +I
Sbjct: 283 GGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDRMIEKDVVTWNLLI 342
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----LKLAALPQ------GLG 309
S +V+ G V DA+ + + + N+ + VT+ S++ A LKL Q G
Sbjct: 343 SGYVQQGLVEDAIHMCQLMRRGNLNFDCVTLSSLMSAAARTHNLKLGKEVQCYCIRHGFV 402
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + + ++MY +CG+I ++K+F K+L+ WN +++ Y
Sbjct: 403 SDIVLASTAVEMYAKCGSIVDAKKVFNSTVEKDLILWNTLLAAYA 447
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 126/252 (50%), Gaps = 29/252 (11%)
Query: 129 DFLVNNSLID-----FYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNL 183
DF N I+ FYAKC L+V+ FSK++ +++ SW A++ G E L
Sbjct: 96 DFYAKNEYIETKLVIFYAKCDALEVAQLLFSKLRARNVFSWAAIIGVRCRIGLVEGA--L 153
Query: 184 LDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LS 232
+ +EM++ + P+ + V AC ++ + G+ +HGYV + +H +
Sbjct: 154 MGFVEMLENGLFPDNFVVPNVCKACGALQWSRFGRGVHGYVAKAGLHDCVFVASSLADMY 213
Query: 233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
CG + + VF+++ R VV WN+++ +V++G +A+ LL + ++P VT+
Sbjct: 214 GKCGLLDDARKVFDEIPDRTVVAWNALMVGYVQNGMNQEAIRLLSAMRNEGIEPTRVTVS 273
Query: 293 SVLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK 341
+ L A + + + GL + + ++++ Y + G I+ + IF M K
Sbjct: 274 TCLSASANMGGIEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDRMIEK 333
Query: 342 NLVSWNVMISVY 353
++V+WN++IS Y
Sbjct: 334 DVVTWNLLISGY 345
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/385 (20%), Positives = 161/385 (41%), Gaps = 92/385 (23%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYN 41
G VH ++ G+ C F+ S L +++ W ++M Y
Sbjct: 186 FGRGVHGYVAKAGLHDCVFVASSLADMYGKCGLLDDARKVFDEIPDRTVVAWNALMVGYV 245
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G +E + L M ++G+ P A + + GK +
Sbjct: 246 QNGMNQEAIRLLSAMRNEGIEPTRVTVSTCLSASANMGGIEEGKQSH------------- 292
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ I +GL + D ++ S+++FY K ++ + F ++ +KD+
Sbjct: 293 -------------AIAIVNGL----ELDNILGTSILNFYCKVGLIEYAEMIFDRMIEKDV 335
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
V+WN +++GY G E+ ++ M + ++ + ++LS +++A A+ +KLGK +
Sbjct: 336 VTWNLLISGYVQQGLVEDAIHMCQLMR--RGNLNFDCVTLSSLMSAAARTHNLKLGKEVQ 393
Query: 222 GYVLRH-----------HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y +RH + + CG ++ + VFN +D+++WN++++A+ G
Sbjct: 394 CYCIRHGFVSDIVLASTAVEMYAKCGSIVDAKKVFNSTVEKDLILWNTLLAAYAEPGLSG 453
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQK 330
+AL L ++ + V PN +T WN++I R G + +
Sbjct: 454 EALRLFYEMQLEGVPPNVIT------------------------WNSVILSLLRNGQVNE 489
Query: 331 SRKIFVLMPHK----NLVSWNVMIS 351
++ +F+ M NL+SW M++
Sbjct: 490 AKDMFLQMQSSGISPNLISWTTMMN 514
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 92/427 (21%), Positives = 180/427 (42%), Gaps = 88/427 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q HA IV G+EL LG+ +L +C W ++
Sbjct: 285 IEEGKQSHAIAIVNGLELDNILGTSILNFYCKVGLIEYAEMIFDRMIEKDVVTWNLLISG 344
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G E+ +++ LM + D + A + + ++GK+V Y I F +
Sbjct: 345 YVQQGLVEDAIHMCQLMRRGNLNFDCVTLSSLMSAAARTHNLKLGKEVQCYCIRHGFVSD 404
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEE-MDQDFLVNNSLIDFYAK---------------- 142
+ ++++ KCG + +F +++D ++ N+L+ YA+
Sbjct: 405 IVLASTAVEMYAKCGSIVDAKKVFNSTVEKDLILWNTLLAAYAEPGLSGEALRLFYEMQL 464
Query: 143 -----------------CRYLKVSHCK--FSKIKQK----DLVSWNAMLAGYALGGFREE 179
R +V+ K F +++ +L+SW M+ G G EE
Sbjct: 465 EGVPPNVITWNSVILSLLRNGQVNEAKDMFLQMQSSGISPNLISWTTMMNGLVQNGCSEE 524
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST------ 233
L +M+ ++ ++ N S++ L+ACA + + G++IHGY++R+ H S+
Sbjct: 525 AIVYLRKMQ--ESGLRLNVFSITVALSACANLASLHFGRSIHGYIIRNQHHSSSVSIETS 582
Query: 234 ------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV-ANVKP 286
CG + + VF ++ ++N++ISA+ G V +A L R + ++P
Sbjct: 583 LVDMYAKCGDISKAERVFGSKLYSELPLYNAMISAYALYGNVKEATALYRSLDEDVGIEP 642
Query: 287 NTVTIVSVLPACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKI 334
+ +TI +VL AC + Q + + + + ++D+ G +K+ ++
Sbjct: 643 DNITITNVLSACHHAGDINQAIHIFTDMVSKHAMKPCLEHYGLMVDLLASAGETEKALRL 702
Query: 335 FVLMPHK 341
MP+K
Sbjct: 703 IEEMPYK 709
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 24/174 (13%)
Query: 204 VLAACAQVKGVKLGKAIHGYVLRH------HIHLSTACGFVICSCS-------VFNQLST 250
+L C + + G+ IH +L++ + ++ T C +F++L
Sbjct: 71 ILQGCVYERDLSTGQQIHARILKNGDFYAKNEYIETKLVIFYAKCDALEVAQLLFSKLRA 130
Query: 251 RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-------- 302
R+V W +II R G V AL +++ + P+ + +V AC L
Sbjct: 131 RNVFSWAAIIGVRCRIGLVEGALMGFVEMLENGLFPDNFVVPNVCKACGALQWSRFGRGV 190
Query: 303 ---ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
GL FV ++L DMYG+CG + +RK+F +P + +V+WN ++ Y
Sbjct: 191 HGYVAKAGLHDCVFVASSLADMYGKCGLLDDARKVFDEIPDRTVVAWNALMVGY 244
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 106/272 (38%), Gaps = 58/272 (21%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+MM G EE + M + G+R + F AC+ L G+ ++ Y+
Sbjct: 508 SWTTMMNGLVQNGCSEEAIVYLRKMQESGLRLNVFSITVALSACANLASLHFGRSIHGYI 567
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + ++ + SL+D YAKC + +
Sbjct: 568 IRNQHHSSSVS-----------------------------IETSLVDMYAKCGDISKAER 598
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNL---LDEMEMIQTDMQPNTISLSGVLAAC 208
F +L +NAM++ YAL G +E T L LDE ++P+ I+++ VL+AC
Sbjct: 599 VFGSKLYSELPLYNAMISAYALYGNVKEATALYRSLDE----DVGIEPDNITITNVLSAC 654
Query: 209 AQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+ +AIH + H C + + ++ +G+
Sbjct: 655 HHAGDIN--QAIHIFTDMVSKHAMKPC-----------------LEHYGLMVDLLASAGE 695
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
AL L+ ++ KP+ I S+L +C K
Sbjct: 696 TEKALRLIEEM---PYKPDARMIQSLLASCNK 724
>gi|255571517|ref|XP_002526706.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534006|gb|EEF35728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 461
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 160/329 (48%), Gaps = 56/329 (17%)
Query: 46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP 105
+ E + +Y M KG P++F P V KAC+ L D+++G ++ ++ + F+ N
Sbjct: 95 FTESIEFYYSMRKKGFLPNNFTFPFVIKACARLLDFQLGIMMHTLVVKLGFDCN------ 148
Query: 106 LLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWN 165
VN SL+ YAKC + + I + ++VSW
Sbjct: 149 ------------------------LFVNTSLVSLYAKCGSIDDALKMLDLIPESNIVSWT 184
Query: 166 AMLAGY-ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY- 223
A+++GY +G +RE + M++T ++P++ ++ VL+AC Q+ + G+ I Y
Sbjct: 185 AIISGYIGVGKYREAIDLF---RRMLETGLRPDSFTIVQVLSACIQIGDLANGEWIDRYI 241
Query: 224 ---VLRHHIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
V+ ++ ++T+ G + + +F+ ++ RD+V W+++I + +G DAL
Sbjct: 242 TENVMARNVFVTTSLVDLYAKHGNMEKARCLFDGMAERDIVSWSAMIQGYASNGLPKDAL 301
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMY 322
DL ++ A +KP+ +V L AC +L AL G T + ALIDMY
Sbjct: 302 DLFFKMLNAGLKPDHYAMVGFLCACARLGALELGDWGSNLMDRTEFFTNHVLGTALIDMY 361
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+CG++ K+ ++F + K+ WN IS
Sbjct: 362 AKCGSMAKAWEVFKGIKGKDRAVWNAAIS 390
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/338 (23%), Positives = 147/338 (43%), Gaps = 64/338 (18%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
+LGI +H ++ G + F+ + L+ ++ +WT+++ Y
Sbjct: 131 QLGIMMHTLVVKLGFDCNLFVNTSLVSLYAKCGSIDDALKMLDLIPESNIVSWTAIISGY 190
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+G Y E ++LF M++ G+RPD F +V AC ++ D G+ + Y
Sbjct: 191 IGVGKYREAIDLFRRMLETGLRPDSFTIVQVLSACIQIGDLANGEWIDRY---------- 240
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
IT + M ++ V SL+D YAK ++ + C F + ++D
Sbjct: 241 -----------------ITENV---MARNVFVTTSLVDLYAKHGNMEKARCLFDGMAERD 280
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+VSW+AM+ GYA G ++ +L +M+ ++P+ ++ G L ACA++ ++LG
Sbjct: 281 IVSWSAMIQGYASNGLPKDALDLF--FKMLNAGLKPDHYAMVGFLCACARLGALELGDWG 338
Query: 221 HGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
+ R I + CG + + VF + +D VWN+ IS +G
Sbjct: 339 SNLMDRTEFFTNHVLGTALIDMYAKCGSMAKAWEVFKGIKGKDRAVWNAAISGLAMNGHE 398
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
A L + ++P+ T V +L C + +G
Sbjct: 399 KAAFGLFGQMERFGIQPDGNTFVGLLCGCTHAGLVDEG 436
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 110/224 (49%), Gaps = 24/224 (10%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F++IK+ D+V +N M+ G E M + PN + V+ ACA++
Sbjct: 71 FNQIKEPDVVLYNTMIRGLVSSDCFTESIEFYYSMR--KKGFLPNNFTFPFVIKACARLL 128
Query: 213 GVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+LG +H V++ + L CG + + + + + ++V W +IIS
Sbjct: 129 DFQLGIMMHTLVVKLGFDCNLFVNTSLVSLYAKCGSIDDALKMLDLIPESNIVSWTAIIS 188
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGT 310
++ G+ +A+DL R ++ ++P++ TIV VL AC+++ L G +
Sbjct: 189 GYIGVGKYREAIDLFRRMLETGLRPDSFTIVQVLSACIQIGDLANGEWIDRYITENVMAR 248
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
FV +L+D+Y + G ++K+R +F M +++VSW+ MI Y
Sbjct: 249 NVFVTTSLVDLYAKHGNMEKARCLFDGMAERDIVSWSAMIQGYA 292
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 11/121 (9%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
+FNQ+ DVV++N++I V S ++++ + PN T V+ AC +L
Sbjct: 70 IFNQIKEPDVVLYNTMIRGLVSSDCFTESIEFYYSMRKKGFLPNNFTFPFVIKACARLLD 129
Query: 304 LPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
G+ + FV +L+ +Y +CG+I + K+ L+P N+VSW +IS
Sbjct: 130 FQLGIMMHTLVVKLGFDCNLFVNTSLVSLYAKCGSIDDALKMLDLIPESNIVSWTAIISG 189
Query: 353 Y 353
Y
Sbjct: 190 Y 190
>gi|255570994|ref|XP_002526448.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534228|gb|EEF35943.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 557
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/348 (27%), Positives = 159/348 (45%), Gaps = 56/348 (16%)
Query: 33 WTSMMGMYNVLGY-YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W SM+ +++ Y E + L M VRP+ V A ++ GK ++ +
Sbjct: 187 WNSMIAGFSLHRVCYNETIQLLAQMQKDLVRPNSSTIVAVLPAVAQANALSHGKALHGF- 245
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
CV+R +D D +V L+D Y KC+ + +
Sbjct: 246 ---------CVRRGYID--------------------DVVVATGLLDMYGKCQCIIYARN 276
Query: 152 KFSKIK-QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDM--QPNTISLSGVLAAC 208
F + ++ V+W+AML Y + E +L M I+ P ++L+ VL AC
Sbjct: 277 FFDMMSIVRNEVTWSAMLGAYVMCELMREALDLFQYMMRIKDAAVKSPTEVTLATVLRAC 336
Query: 209 AQVKGVKLGKAIHGYVLRH---------HIHLST--ACGFVICSCSVFNQLSTRDVVVWN 257
A++ V G+ IH Y ++ + LST CG V + F+++ +D V ++
Sbjct: 337 AELTDVSRGRCIHCYTIKSGFISDLMLGNTLLSTYAKCGTVSDAIRYFHEMELKDEVSYS 396
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF---- 313
+IIS +++G +AL + + ++ + P T+V +LPAC LAAL G S+
Sbjct: 397 AIISGCMQNGNAKEALSMFHRMRLSGMDPELATMVGILPACAHLAALQHGSCCHSYALIK 456
Query: 314 -------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ NALIDMY +CG I +R +F M +++VSWN MI YG
Sbjct: 457 GFTSEITICNALIDMYAKCGRIDTARNVFDRMHKRDIVSWNAMIIAYG 504
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 94/348 (27%), Positives = 167/348 (47%), Gaps = 62/348 (17%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W ++ Y G + E +NL+Y M++ G++P + P V KACS L+ GK+++
Sbjct: 86 WNMLIRAYAWNGPFTEAINLYYKMLELGIQPSKYTYPFVLKACSALQAIEEGKEIH---- 141
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
I R++ +D D V+ +++D YAKC L +
Sbjct: 142 ------------------IHAKRLD--------LDSDVYVSTAVVDMYAKCGCLDDAEMV 175
Query: 153 FSKIKQKDLVSWNAMLAGYALGGF-REEVTNLLDEMEMIQTDM-QPNTISLSGVLAACAQ 210
FS + +D+V+WN+M+AG++L E LL +M Q D+ +PN+ ++ VL A AQ
Sbjct: 176 FSGMPYRDVVAWNSMIAGFSLHRVCYNETIQLLAQM---QKDLVRPNSSTIVAVLPAVAQ 232
Query: 211 VKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLS-TRDVVVWNS 258
+ GKA+HG+ +R + + C +I + + F+ +S R+ V W++
Sbjct: 233 ANALSHGKALHGFCVRRGYIDDVVVATGLLDMYGKCQCIIYARNFFDMMSIVRNEVTWSA 292
Query: 259 IISAFVRSGQVVDALDLLRDVI----VANVKPNTVTIVSVLPACLKLA-----------A 303
++ A+V + +ALDL + ++ A P VT+ +VL AC +L
Sbjct: 293 MLGAYVMCELMREALDLFQYMMRIKDAAVKSPTEVTLATVLRACAELTDVSRGRCIHCYT 352
Query: 304 LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ G + + N L+ Y +CG + + + F M K+ VS++ +IS
Sbjct: 353 IKSGFISDLMLGNTLLSTYAKCGTVSDAIRYFHEMELKDEVSYSAIIS 400
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 131/282 (46%), Gaps = 47/282 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMI---DKGVR-PDHFVCPKVYKACSELKDYRVGKDV 87
W++M+G Y + E ++LF M+ D V+ P V +AC+EL D G+ +
Sbjct: 289 TWSAMLGAYVMCELMREALDLFQYMMRIKDAAVKSPTEVTLATVLRACAELTDVSRGRCI 348
Query: 88 YDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147
+ Y I SG D ++ N+L+ YAKC +
Sbjct: 349 HCYTIK--------------------------SGFI----SDLMLGNTLLSTYAKCGTVS 378
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
+ F +++ KD VS++A+++G G +E ++ M + + M P ++ G+L A
Sbjct: 379 DAIRYFHEMELKDEVSYSAIISGCMQNGNAKEALSMFHRMRL--SGMDPELATMVGILPA 436
Query: 208 CAQVKGVKLGKAIHGYVL-----------RHHIHLSTACGFVICSCSVFNQLSTRDVVVW 256
CA + ++ G H Y L I + CG + + +VF+++ RD+V W
Sbjct: 437 CAHLAALQHGSCCHSYALIKGFTSEITICNALIDMYAKCGRIDTARNVFDRMHKRDIVSW 496
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
N++I A+ G ++AL L +++ ++P+ VT + +L AC
Sbjct: 497 NAMIIAYGNHGLGMEALLLFDNMLADGLEPDDVTFICLLSAC 538
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 121/249 (48%), Gaps = 28/249 (11%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQK--DLVSWNAMLAGYALGGFREEVTNLLDEME 188
LV L+ Y C + + F K Q+ +V WN ++ YA G E NL +
Sbjct: 51 LVIEKLMHLYLVCNEDQYARHLFDKSPQRPRKVVIWNMLIRAYAWNGPFTEAINLY--YK 108
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTA-------CGF 237
M++ +QP+ + VL AC+ ++ ++ GK IH + R +++STA CG
Sbjct: 109 MLELGIQPSKYTYPFVLKACSALQAIEEGKEIHIHAKRLDLDSDVYVSTAVVDMYAKCGC 168
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAF-VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296
+ + VF+ + RDVV WNS+I+ F + + + LL + V+PN+ TIV+VLP
Sbjct: 169 LDDAEMVFSGMPYRDVVAWNSMIAGFSLHRVCYNETIQLLAQMQKDLVRPNSSTIVAVLP 228
Query: 297 ACLKLAALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMP-HKNLV 344
A + AL G F V L+DMYG+C I +R F +M +N V
Sbjct: 229 AVAQANALSHGKALHGFCVRRGYIDDVVVATGLLDMYGKCQCIIYARNFFDMMSIVRNEV 288
Query: 345 SWNVMISVY 353
+W+ M+ Y
Sbjct: 289 TWSAMLGAY 297
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 89/182 (48%), Gaps = 29/182 (15%)
Query: 199 ISLSGVLAACAQVKGVKLGKAIHGYVLRHHI----------------HLSTACGFVICSC 242
+ + +L C Q K + GK IH +L+HHI HL C +
Sbjct: 11 VDYTHLLEPCIQSKWLSQGKLIHQNLLKHHIAKNNDTHFRLVIEKLMHLYLVCNEDQYAR 70
Query: 243 SVFNQ--LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+F++ R VV+WN +I A+ +G +A++L ++ ++P+ T VL AC
Sbjct: 71 HLFDKSPQRPRKVVIWNMLIRAYAWNGPFTEAINLYYKMLELGIQPSKYTYPFVLKACSA 130
Query: 301 LAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L A+ +G L + +V A++DMY +CG + + +F MP++++V+WN M
Sbjct: 131 LQAIEEGKEIHIHAKRLDLDSDVYVSTAVVDMYAKCGCLDDAEMVFSGMPYRDVVAWNSM 190
Query: 350 IS 351
I+
Sbjct: 191 IA 192
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 32/172 (18%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G +E +++F+ M G+ P+ + AC+ L + G + Y +
Sbjct: 406 GNAKEALSMFHRMRLSGMDPELATMVGILPACAHLAALQHGSCCHSYAL----------- 454
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
IK EIT + N+LID YAKC + + F ++ ++D+VS
Sbjct: 455 -------IKGFTSEIT------------ICNALIDMYAKCGRIDTARNVFDRMHKRDIVS 495
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
WNAM+ Y G E L D M+ ++P+ ++ +L+AC+ VK
Sbjct: 496 WNAMIIAYGNHGLGMEALLLFD--NMLADGLEPDDVTFICLLSACSHSGLVK 545
>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 792
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/396 (25%), Positives = 176/396 (44%), Gaps = 81/396 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G +H IV G + LGS +++++ W +M+ Y
Sbjct: 138 GCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRK 197
Query: 43 LGYYEEIVNLFYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
Y E + +F +I++ R D + A +EL++ R+G ++
Sbjct: 198 NEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHS------------ 245
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ +G + D+++ I Y+KC +K++ F + ++ D+
Sbjct: 246 --------------LATKTGCY---SHDYVLTG-FISLYSKCGKIKMASTLFREFRRPDI 287
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG-VKLGKAI 220
V++NAM+ GY G E +L E+ + ++ +T L + V G + L AI
Sbjct: 288 VAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSST------LVSLVPVSGHLMLIYAI 341
Query: 221 HGYVLRH----HIHLSTACGFVICSCS-------VFNQLSTRDVVVWNSIISAFVRSGQV 269
HGY L+ H +STA V + +F++ + + WN++IS + ++G
Sbjct: 342 HGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLT 401
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNAL 318
DA+ L R++ + PN VTI +L AC +L AL G + +V AL
Sbjct: 402 EDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTAL 461
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
I MY +CG+I ++R++F MP KN V+WN MIS YG
Sbjct: 462 IGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYG 497
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 105/224 (46%), Gaps = 24/224 (10%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F +++ D+ +N ++ G+++ + + TD++PN+ + + ++A + +
Sbjct: 75 FLSVQRPDVFLFNVLMRGFSVNESPHSSLAVFAHLRK-STDLKPNSSTYAFAISAASGFR 133
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVIC-----------SCSVFNQLSTRDVVVWNSIIS 261
+ G IHG + G I + VF+++ +D ++WN++IS
Sbjct: 134 DDRAGCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMIS 193
Query: 262 AFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPACLKLAALPQGLGTGS-------- 312
+ ++ V+++ + RD+I + + +T T++ +LPA +L L G+ S
Sbjct: 194 GYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCY 253
Query: 313 ---FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+V I +Y +CG I+ + +F ++V++N MI Y
Sbjct: 254 SHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGY 297
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 32/189 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G E+ ++LF M + P+ + AC++L +GK V+D +
Sbjct: 387 SWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLV 446
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
S FE + V+ +LI YAKC + +
Sbjct: 447 RSTDFESS------------------------------IYVSTALIGMYAKCGSIAEARR 476
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +K+ V+WN M++GY L G +E + EM+ + + P ++ VL AC+
Sbjct: 477 LFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFS--EMLNSGIAPTPVTFLCVLYACSHA 534
Query: 212 KGVKLGKAI 220
VK G I
Sbjct: 535 GLVKEGDEI 543
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 78/180 (43%), Gaps = 28/180 (15%)
Query: 193 DMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTAC-------GFVICSCSVF 245
D+ + S+S + AQ+ +HG+ R+ I L T G + + +F
Sbjct: 25 DLFKRSTSISHLAQTHAQI-------VLHGF--RNDISLLTKLTQRLSDLGAIYYARDIF 75
Query: 246 NQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA-NVKPNTVTIVSVLPAC------ 298
+ DV ++N ++ F + +L + + + ++KPN+ T + A
Sbjct: 76 LSVQRPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDD 135
Query: 299 -----LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ A+ G + + + ++ MY + ++ +RK+F MP K+ + WN MIS Y
Sbjct: 136 RAGCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGY 195
>gi|357487403|ref|XP_003613989.1| hypothetical protein MTR_5g043450 [Medicago truncatula]
gi|355515324|gb|AES96947.1| hypothetical protein MTR_5g043450 [Medicago truncatula]
Length = 828
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 170/345 (49%), Gaps = 56/345 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WTSM+ YN +EE +++F M D V P+ V +C+ L + GK V+
Sbjct: 272 WTSMISAYNQNECFEEALDVFIKMQDSEVEPNDVTMISVLNSCARLGRLKEGKSVH---- 327
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F+ M +T +D + +LIDFY+ C K+S C+
Sbjct: 328 ----------------CFVLRNAMGVTG-----LD----LGPALIDFYSAC--WKMSSCE 360
Query: 153 --FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
I +++VSWN +++ YA G +E M+ + P++ SL+ ++A A
Sbjct: 361 KLLHSIGNENIVSWNTLISFYAREGLNDEAMAFF--ACMVAKGIMPDSFSLASSISASAS 418
Query: 211 VKGVKLGKAIHGYVLRHH----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ G+ IHG+V++ + + + CGF + ++FN++ + +V WN +I
Sbjct: 419 SGSIQFGQQIHGHVMKRGFFDEFVQNSLMDMYSKCGFASSAYTIFNKIKHKSIVAWNCMI 478
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGS- 312
F ++G V+AL L ++ ++ N VT +S + AC L L +G + TG+
Sbjct: 479 CGFSQNGISVEALSLFDEMFKNRLEINKVTFLSAIQACSNLGYLDKGKWIHHKIIVTGNQ 538
Query: 313 ---FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
++ AL+DMY +CG +Q ++K+F + K++VSW+ MI+ +G
Sbjct: 539 NDLYIDTALVDMYAKCGDLQTAQKVFDSIVEKSVVSWSTMIAAHG 583
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/307 (25%), Positives = 147/307 (47%), Gaps = 48/307 (15%)
Query: 28 EVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDV 87
E +W +++ Y G +E + F M+ KG+ PD F A + + G+ +
Sbjct: 369 ENIVSWNTLISFYAREGLNDEAMAFFACMVAKGIMPDSFSLASSISASASSGSIQFGQQI 428
Query: 88 YDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147
+ +++ KR D F++ NSL+D Y+KC +
Sbjct: 429 HGHVM----------KRGFFDEFVQ---------------------NSLMDMYSKCGFAS 457
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
++ F+KIK K +V+WN M+ G++ G E +L D EM + ++ N ++ + A
Sbjct: 458 SAYTIFNKIKHKSIVAWNCMICGFSQNGISVEALSLFD--EMFKNRLEINKVTFLSAIQA 515
Query: 208 CAQVKGVKLGKAIHGYVL----RHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVW 256
C+ + + GK IH ++ ++ +++ TA CG + + VF+ + + VV W
Sbjct: 516 CSNLGYLDKGKWIHHKIIVTGNQNDLYIDTALVDMYAKCGDLQTAQKVFDSIVEKSVVSW 575
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN 316
+++I+A GQ+ A L ++++N+KPN VT +++L AC ++ + G F +N
Sbjct: 576 STMIAAHGIHGQINAATSLFHKMVLSNIKPNEVTFMNILSACRHAGSVKE----GKFYFN 631
Query: 317 ALIDMYG 323
+ D YG
Sbjct: 632 TMRDYYG 638
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/396 (24%), Positives = 178/396 (44%), Gaps = 79/396 (19%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMG--------------MYNVL-------G 44
Q+HAHL+V + ++LLE + S+ M++VL
Sbjct: 19 QLHAHLVVTSLHNNPLASTKLLESYSQMGSLQSSRLVFYTHPSPDSFMFSVLIKCHLWNH 78
Query: 45 YYEEIVNLFYLMIDKGVRPDH---FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+ E+++LF I G + F+ P V +A + + + VG+ ++
Sbjct: 79 LFREVLSLFNHHIQMGSKLTQNCAFLYPSVIRAVTGVGELIVGRKLH------------- 125
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
GR+ + SG E D ++ SL+ Y + +L+ + F ++ +DL
Sbjct: 126 ------------GRI-LKSGFCE----DRVIGTSLVGMYGELCFLRDAKKVFDEMCVRDL 168
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
V W+++++ Y G E + MI ++P+++ L V AC ++ ++L K++H
Sbjct: 169 VLWSSIISCYVENGVYREGLEMF--RSMICEGIRPDSVMLLSVAEACGKIGCLRLAKSVH 226
Query: 222 GYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
GYV+R I + + CG++ + +F + R W S+ISA+ ++
Sbjct: 227 GYVMREGMVGDGSLSNSLIVMYSQCGYLCRAKRLFECIDDRSTSCWTSMISAYNQNECFE 286
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN------------AL 318
+ALD+ + + V+PN VT++SVL +C +L L +G FV AL
Sbjct: 287 EALDVFIKMQDSEVEPNDVTMISVLNSCARLGRLKEGKSVHCFVLRNAMGVTGLDLGPAL 346
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
ID Y C + K+ + ++N+VSWN +IS Y
Sbjct: 347 IDFYSACWKMSSCEKLLHSIGNENIVSWNTLISFYA 382
>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 786
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/373 (24%), Positives = 178/373 (47%), Gaps = 32/373 (8%)
Query: 10 HLIVCGVELCAFLGSQLLEV-FCNWTSMMGMYNVLGYYEEIVNLFYLMI-DKGVRPDHFV 67
H+ V ++L Q+ E W SM+ +N GY +++F M+ D + PD F
Sbjct: 222 HMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFT 281
Query: 68 CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM- 126
V AC+ L+ +GK ++ ++++ F+ + V L+ ++ +CG +E L E+
Sbjct: 282 LASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRG 341
Query: 127 DQDFLVN--NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLL 184
+D + +L+D Y K + + F +K +D+V+W AM+ GY G E NL
Sbjct: 342 TKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLF 401
Query: 185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTA------ 234
M+ +PN+ +L+ +L+ + + + GK IHG ++ + + +S A
Sbjct: 402 --RSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYA 459
Query: 235 -CGFVICSCSVFNQLS-TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
G + + F+ + RD V W S+I A + G +AL+L +++ ++P+ +T V
Sbjct: 460 KAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYV 519
Query: 293 SVLPACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFVLMP- 339
V AC + QG + + ++D++GR G +Q++++ MP
Sbjct: 520 GVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPI 579
Query: 340 HKNLVSWNVMISV 352
++V+W ++S
Sbjct: 580 EPDVVTWGSLLSA 592
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 93/389 (23%), Positives = 179/389 (46%), Gaps = 58/389 (14%)
Query: 19 CAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL 78
C F +WT+M+ Y +G Y + + + M+ +G+ P F V + +
Sbjct: 100 CEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAAT 159
Query: 79 KDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLI 137
+ GK V+ +++ + GN V LL+++ KCG + +F+ M +D N++I
Sbjct: 160 RCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMI 219
Query: 138 DFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN 197
+ + + ++ +F ++ ++D+V+WN+M++G+ G+ ++ +M + + + P+
Sbjct: 220 ALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKM-LRDSLLSPD 278
Query: 198 TISLSGVLAACAQVKGVKLGKAIH-----------GYVLRHHIHLSTACGFVIC------ 240
+L+ VL+ACA ++ + +GK IH G VL I + + CG V
Sbjct: 279 RFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIE 338
Query: 241 ---------------------------SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
+ ++F L RDVV W ++I + + G +A+
Sbjct: 339 QRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAI 398
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGSF----VWNALIDMY 322
+L R ++ +PN+ T+ ++L LA+L G + +G V NALI MY
Sbjct: 399 NLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMY 458
Query: 323 GRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ G I + + F L+ ++ VSW MI
Sbjct: 459 AKAGNITSASRAFDLIRCERDTVSWTSMI 487
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 139/298 (46%), Gaps = 67/298 (22%)
Query: 106 LLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKF-SKIKQKDLVS 163
L++++ K G LF+EM + N+++ Y+K R S C+F ++ Q+D VS
Sbjct: 55 LMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSK-RGDMDSTCEFFDQLPQRDSVS 113
Query: 164 WNAMLAGYA-LGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
W M+ GY +G + + + + D M++ ++P +L+ VLA+ A + ++ GK +H
Sbjct: 114 WTTMIVGYKNIGQYHKAIRVMGD---MVKEGIEPTQFTLTNVLASVAATRCMETGKKVHS 170
Query: 223 YV----LRHHIHLSTA-------CG------FVI-------------------------C 240
++ LR ++ +S + CG FV
Sbjct: 171 FIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDL 230
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALD----LLRDVIVANVKPNTVTIVSVLP 296
+ + F Q++ RD+V WNS+IS F + G + ALD +LRD +++ P+ T+ SVL
Sbjct: 231 AMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLS---PDRFTLASVLS 287
Query: 297 ACLKLAAL-----------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
AC L L G V NALI MY RCG ++ +R++ K+L
Sbjct: 288 ACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDL 345
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 23/162 (14%)
Query: 215 KLGKAIHGYVLRHHIHLSTAC------------GFVICSCSVFNQLSTRDVVVWNSIISA 262
K G A+H L + L TA G + +C F+QL RD V W ++I
Sbjct: 61 KTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVG 120
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF--------- 313
+ GQ A+ ++ D++ ++P T+ +VL + + G SF
Sbjct: 121 YKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGN 180
Query: 314 --VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V N+L++MY +CG ++ +F M +++ SWN MI+++
Sbjct: 181 VSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALH 222
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ G+ EE + LF M+ +G+RPDH V+ AC+ G+ +D M
Sbjct: 482 SWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMM 541
Query: 92 ISIK-----FEGNACVKRPLLDLFIKCGRMEITSGLFEEM--DQDFLVNNSLIDFYAKCR 144
+ AC ++DLF + G ++ E+M + D + SL+ + CR
Sbjct: 542 KDVDKIIPTLSHYAC----MVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLL---SACR 594
Query: 145 YLK 147
K
Sbjct: 595 VHK 597
>gi|414585599|tpg|DAA36170.1| TPA: hypothetical protein ZEAMMB73_453858 [Zea mays]
Length = 829
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/347 (26%), Positives = 161/347 (46%), Gaps = 56/347 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNL-FYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M+ Y G + E + L LM+ K V D A S+ +D R+G+ ++ Y+
Sbjct: 315 WNTMITGYVQNGKFAEAMGLVIRLMVSKEVPLDVVTFLSALTAASQSQDGRLGQQLHGYL 374
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I G+ + ++ N+L+ Y++C ++ +
Sbjct: 375 IK---------------------------GMHTTLP--VILGNALVVMYSRCGNVQTAFE 405
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +KD+VSWN M+ + F ++ LL +M ++ + ++L+ VL+A +
Sbjct: 406 LFDRLHEKDIVSWNTMITAFVQNDF--DLEGLLLVYQMQKSGFAADLVTLTAVLSAASNT 463
Query: 212 KGVKLGKAIHGYVLRHHIH----------LSTACGFVICSCSVFNQL--STRDVVVWNSI 259
+ +GK H Y++RH I + G + + VF+ + RD V WN++
Sbjct: 464 GDLHIGKQAHSYLIRHGIEGEGLESYLIDMYAKSGRIEIAQRVFDDYGNAKRDEVTWNAM 523
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA------------ALPQG 307
I+ + ++G A+ R +I A ++P +VT+ SVLPAC L AL +
Sbjct: 524 IAGYTQTGHPEQAILAFRAMIEACLEPTSVTLASVLPACDPLGGGLCAGKQIHCFALRRC 583
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L T FV AL+DMY +CG I + +F M K+ VS+ MIS G
Sbjct: 584 LDTNVFVGTALVDMYSKCGEISTAEHVFADMTEKSTVSYTTMISGLG 630
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 128/290 (44%), Gaps = 43/290 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ + + E + L Y M G D V A S D +GK + Y+
Sbjct: 417 SWNTMITAFVQNDFDLEGLLLVYQMQKSGFAADLVTLTAVLSAASNTGDLHIGKQAHSYL 476
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I EG ++ L+D++ K GR+EI +F++
Sbjct: 477 IRHGIEGEG-LESYLIDMYAKSGRIEIAQRVFDDYGN----------------------- 512
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
++D V+WNAM+AGY G E+ +L MI+ ++P +++L+ VL AC +
Sbjct: 513 -----AKRDEVTWNAMIAGYTQTGHPEQA--ILAFRAMIEACLEPTSVTLASVLPACDPL 565
Query: 212 KG-VKLGKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
G + GK IH + LR ++ + TA CG + + VF ++ + V + ++
Sbjct: 566 GGGLCAGKQIHCFALRRCLDTNVFVGTALVDMYSKCGEISTAEHVFADMTEKSTVSYTTM 625
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG 309
IS + G AL L + +KP+ VT ++ + AC + +GL
Sbjct: 626 ISGLGQHGFGKSALSLFYSMQEKGLKPDGVTFLAAISACNYSGLVDEGLA 675
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 95/406 (23%), Positives = 173/406 (42%), Gaps = 83/406 (20%)
Query: 1 MELGIQVHAHLIVCGVEL--CAFLGSQLLEVFCN-------------------------- 32
+ LG VHAHL+ L A L + LL V+ +
Sbjct: 152 LRLGKSVHAHLLRRARSLPDTAVLRNSLLNVYASCVRYRGDGSVDVVRRLFDAMPKRNAV 211
Query: 33 -WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W ++ G Y G +E + +F M++ G++P V+ A V K+ +
Sbjct: 212 SWNTLFGWYVKTGRPQEALEMFVRMLEDGIKPTPVSFVNVFPA--------VAKEDPSWS 263
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
L L +K G ME + LF V +S I +++ ++ +
Sbjct: 264 FV------------LYGLLVKHG-MEYVNDLF--------VVSSAIVMFSELGDVQSAWR 302
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +K+ WN M+ GY G E L+ + M+ ++ + ++ L A +Q
Sbjct: 303 VFEYAAKKNTEVWNTMITGYVQNGKFAEAMGLVIRL-MVSKEVPLDVVTFLSALTAASQS 361
Query: 212 KGVKLGKAIHGYVLRH-HIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSI 259
+ +LG+ +HGY+++ H L + CG V + +F++L +D+V WN++
Sbjct: 362 QDGRLGQQLHGYLIKGMHTTLPVILGNALVVMYSRCGNVQTAFELFDRLHEKDIVSWNTM 421
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------ 313
I+AFV++ ++ L L+ + + + VT+ +VL A L G S+
Sbjct: 422 ITAFVQNDFDLEGLLLVYQMQKSGFAADLVTLTAVLSAASNTGDLHIGKQAHSYLIRHGI 481
Query: 314 ----VWNALIDMYGRCGAIQKSRKIF--VLMPHKNLVSWNVMISVY 353
+ + LIDMY + G I+ ++++F ++ V+WN MI+ Y
Sbjct: 482 EGEGLESYLIDMYAKSGRIEIAQRVFDDYGNAKRDEVTWNAMIAGY 527
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 32/222 (14%)
Query: 164 WNAMLAGYALGGFREEVTNLLDEM-EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+NA+L Y E L + + + + + S L ACA+ + ++LGK++H
Sbjct: 101 YNALLIAYVARALPEHALRLYALLNHAARPTPRSDHYTYSCALTACARTRRLRLGKSVHA 160
Query: 223 YVLRHHIHLSTACGF------VICSC-------------SVFNQLSTRDVVVWNSIISAF 263
++LR L V SC +F+ + R+ V WN++ +
Sbjct: 161 HLLRRARSLPDTAVLRNSLLNVYASCVRYRGDGSVDVVRRLFDAMPKRNAVSWNTLFGWY 220
Query: 264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA----------LPQGLG--TG 311
V++G+ +AL++ ++ +KP V+ V+V PA K + G+
Sbjct: 221 VKTGRPQEALEMFVRMLEDGIKPTPVSFVNVFPAVAKEDPSWSFVLYGLLVKHGMEYVND 280
Query: 312 SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
FV ++ I M+ G +Q + ++F KN WN MI+ Y
Sbjct: 281 LFVVSSAIVMFSELGDVQSAWRVFEYAAKKNTEVWNTMITGY 322
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 55/231 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC-----------------------NWTSMM 37
+ +G Q H++LI G+E L S L++++ W +M+
Sbjct: 466 LHIGKQAHSYLIRHGIE-GEGLESYLIDMYAKSGRIEIAQRVFDDYGNAKRDEVTWNAMI 524
Query: 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
Y G+ E+ + F MI+ + P V AC L
Sbjct: 525 AGYTQTGHPEQAILAFRAMIEACLEPTSVTLASVLPACDPLG------------------ 566
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
G C + I C L +D + V +L+D Y+KC + + F+ +
Sbjct: 567 GGLCAGKQ-----IHC------FALRRCLDTNVFVGTALVDMYSKCGEISTAEHVFADMT 615
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
+K VS+ M++G GF + +L M+ + ++P+ ++ ++AC
Sbjct: 616 EKSTVSYTTMISGLGQHGFGKSALSLFYSMQ--EKGLKPDGVTFLAAISAC 664
>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65570-like [Glycine max]
Length = 676
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/344 (26%), Positives = 161/344 (46%), Gaps = 53/344 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W SM+ + G +E V + M+ +GV PD + + KA S+L R G+ + +
Sbjct: 69 WNSMISSHISHGKSKEAVEFYGNMLMEGVLPDAYTFSAISKAFSQLGLIRHGQRAHGLAV 128
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ E +LD F V ++L+D YAK ++ +H
Sbjct: 129 VLGLE--------VLDGF---------------------VASALVDMYAKFDKMRDAHLV 159
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ +KD+V + A++ GYA G E + ++M + ++PN +L+ +L C +
Sbjct: 160 FRRVLEKDVVLFTALIVGYAQHGLDGEALKIFEDM--VNRGVKPNEYTLACILINCGNLG 217
Query: 213 GVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ G+ IHG V++ + + + C + S VFNQL + V W S +
Sbjct: 218 DLVNGQLIHGLVVKSGLESVVASQTSLLTMYSRCNMIEDSIKVFNQLDYANQVTWTSFVV 277
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGT 310
V++G+ A+ + R++I ++ PN T+ S+L AC LA L GL
Sbjct: 278 GLVQNGREEVAVSIFREMIRCSISPNPFTLSSILQACSSLAMLEVGEQIHAITMKLGLDG 337
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ ALI++YG+CG + K+R +F ++ ++V+ N MI Y
Sbjct: 338 NKYAGAALINLYGKCGNMDKARSVFDVLTELDVVAINSMIYAYA 381
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 88/393 (22%), Positives = 173/393 (44%), Gaps = 77/393 (19%)
Query: 4 GIQVHAHLIVCGVE-LCAFLGSQLLEVFCNWTSMMGMYNV----------------LGYY 46
G + H +V G+E L F+ S L++++ + M + V +GY
Sbjct: 120 GQRAHGLAVVLGLEVLDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYA 179
Query: 47 E-----EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+ E + +F M+++GV+P+ + + C L D G+ ++
Sbjct: 180 QHGLDGEALKIFEDMVNRGVKPNEYTLACILINCGNLGDLVNGQLIHG------------ 227
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
L +K G + + SL+ Y++C ++ S F+++ +
Sbjct: 228 -------LVVKSGLESVVAS-----------QTSLLTMYSRCNMIEDSIKVFNQLDYANQ 269
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
V+W + + G G REEV + EMI+ + PN +LS +L AC+ + +++G+ IH
Sbjct: 270 VTWTSFVVGLVQNG-REEVAVSIFR-EMIRCSISPNPFTLSSILQACSSLAMLEVGEQIH 327
Query: 222 GYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
++ I+L CG + + SVF+ L+ DVV NS+I A+ ++G
Sbjct: 328 AITMKLGLDGNKYAGAALINLYGKCGNMDKARSVFDVLTELDVVAINSMIYAYAQNGFGH 387
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA------------L 318
+AL+L + + PN VT +S+L AC + +G + + N +
Sbjct: 388 EALELFERLKNMGLVPNGVTFISILLACNNAGLVEEGCQIFASIRNNHNIELTIDHFTCM 447
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
ID+ GR ++++ + + + ++V W +++
Sbjct: 448 IDLLGRSRRLEEAAMLIEEVRNPDVVLWRTLLN 480
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 110/245 (44%), Gaps = 29/245 (11%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
+ + LID Y KC L + F ++ + +V+WN+M++ + G +E M M
Sbjct: 36 FLGHKLIDGYIKCGSLAEARKLFDELPSRHIVTWNSMISSHISHGKSKEAVEFYGNMLM- 94
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCS------- 243
+ P+ + S + A +Q+ ++ G+ HG + + L GFV +
Sbjct: 95 -EGVLPDAYTFSAISKAFSQLGLIRHGQRAHGLAVV--LGLEVLDGFVASALVDMYAKFD 151
Query: 244 -------VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296
VF ++ +DVV++ ++I + + G +AL + D++ VKPN T+ +L
Sbjct: 152 KMRDAHLVFRRVLEKDVVLFTALIVGYAQHGLDGEALKIFEDMVNRGVKPNEYTLACILI 211
Query: 297 ACLKLAALPQGL---------GTGSFV--WNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
C L L G G S V +L+ MY RC I+ S K+F + + N V+
Sbjct: 212 NCGNLGDLVNGQLIHGLVVKSGLESVVASQTSLLTMYSRCNMIEDSIKVFNQLDYANQVT 271
Query: 346 WNVMI 350
W +
Sbjct: 272 WTSFV 276
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 83/175 (47%), Gaps = 22/175 (12%)
Query: 202 SGVLAACAQVKGVKLGKAIHGYVLRHHIHLS----------TACGFVICSCSVFNQLSTR 251
S ++A A K + +A+H V++ S CG + + +F++L +R
Sbjct: 5 SSLIAQSAHTKSLTTLRAVHTNVIKSGFSYSFLGHKLIDGYIKCGSLAEARKLFDELPSR 64
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---- 307
+V WNS+IS+ + G+ +A++ ++++ V P+ T ++ A +L + G
Sbjct: 65 HIVTWNSMISSHISHGKSKEAVEFYGNMLMEGVLPDAYTFSAISKAFSQLGLIRHGQRAH 124
Query: 308 -----LG---TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
LG FV +AL+DMY + ++ + +F + K++V + +I Y
Sbjct: 125 GLAVVLGLEVLDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYA 179
>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Brachypodium distachyon]
Length = 805
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/388 (23%), Positives = 175/388 (45%), Gaps = 68/388 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSE--------LKDYRV 83
++T+MMG G ++ + LF M GVR D V +C++ ++ +R+
Sbjct: 208 SFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASEFDVVRAFRL 267
Query: 84 GKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYA- 141
G+ ++ ++ F + V L+D++ KC +M+ +F+ + V+ N LI +
Sbjct: 268 GQCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNILITGFGQ 327
Query: 142 ----------------------------------KCRYLKVSHCKFSKIKQKDLVSWNAM 167
K R + + F KI + + +WN +
Sbjct: 328 AGSYAKALEVLNLMEESGSEPNEVTYSNMLASCIKARDVLSARAMFDKISRPSVTTWNTL 387
Query: 168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH 227
L+GY ++ L M+ ++QP+ +L+ +L++C+++ + LG +H +R
Sbjct: 388 LSGYCQEELHQDTVELFRRMQ--HQNVQPDRTTLAVILSSCSRLGILDLGTQVHSASVRF 445
Query: 228 HIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL 276
+H + + CG + + +FN+++ RDVV WNS+IS +A D
Sbjct: 446 LLHNDMFVASGLVDMYSKCGQIGIARIIFNRMTERDVVCWNSMISGLAIHSLNEEAFDFF 505
Query: 277 RDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNALIDMYGRC 325
+ + + P + S++ +C +L+++PQG + +V +ALIDMY +C
Sbjct: 506 KQMRGNGMMPTESSYASMINSCARLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKC 565
Query: 326 GAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G + +R F M KN+V+WN MI Y
Sbjct: 566 GNMDDARVFFDCMVTKNIVAWNEMIHGY 593
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/345 (21%), Positives = 153/345 (44%), Gaps = 56/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +++ Y +++ V LF M + V+PD + +CS L +G V+
Sbjct: 383 TWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQVHS-- 440
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
S++F + D V + L+D Y+KC + ++
Sbjct: 441 ASVRFL----------------------------LHNDMFVASGLVDMYSKCGQIGIARI 472
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+++ ++D+V WN+M++G A+ EE + +M M P S + ++ +CA++
Sbjct: 473 IFNRMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMR--GNGMMPTESSYASMINSCARL 530
Query: 212 KGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
V G+ IH +++ ++++ +A CG + + F+ + T+++V WN +I
Sbjct: 531 SSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDDARVFFDCMVTKNIVAWNEMI 590
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GL 308
+ ++G A+DL ++ +P+ VT ++VL C + + G+
Sbjct: 591 HGYAQNGFGEKAVDLFEYMLTTEQRPDGVTFIAVLTGCSHSGLVDEAIAFFNSMESTYGI 650
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
+ + LID GR G + + + MP K + + W V+++
Sbjct: 651 TPLAEHYTCLIDGLGRAGRLVEVEALIDNMPCKDDPIVWEVLLAA 695
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 120/251 (47%), Gaps = 32/251 (12%)
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
N+ + + L + ++ +++VSWN ++A A E L + M ++
Sbjct: 78 NAALSAARRAGDLDAARALLDEMPDRNVVSWNTVIAALARSERAGEALELYEGM--LREG 135
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSC 242
+ P +L+ VL+AC V + G+ HG +V + + T CG V +
Sbjct: 136 LVPTHFTLASVLSACGAVAALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAV 195
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
+F+ +++ + V + +++ V++G V DAL L + + V+ + V + SVL +C +
Sbjct: 196 RLFDGMASPNEVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQAC 255
Query: 303 A-------------------LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
A + +G G+ V N+LIDMY +C + ++ K+F +P+ +
Sbjct: 256 ASEFDVVRAFRLGQCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNIST 315
Query: 344 VSWNVMISVYG 354
VSWN++I+ +G
Sbjct: 316 VSWNILITGFG 326
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 78/347 (22%), Positives = 147/347 (42%), Gaps = 58/347 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ E + L+ M+ +G+ P HF V AC + G+
Sbjct: 107 SWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLASVLSACGAVAALDDGR------ 160
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+C + + GL D++ V N+L+ Y KC ++ +
Sbjct: 161 --------------------RCHGLAVKVGL----DENLFVENALLGMYTKCGGVEDAVR 196
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ- 210
F + + VS+ AM+ G G ++ L M ++ ++ + +++S VL +CAQ
Sbjct: 197 LFDGMASPNEVSFTAMMGGLVQAGSVDDALRLF--ARMCRSGVRVDPVAVSSVLGSCAQA 254
Query: 211 -------VKGVKLGKAIHGYVLR------HH-----IHLSTACGFVICSCSVFNQLSTRD 252
V+ +LG+ IH ++R H I + T C + + VF+ L
Sbjct: 255 CASEFDVVRAFRLGQCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNIS 314
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK------LAALPQ 306
V WN +I+ F ++G AL++L + + +PN VT ++L +C+K A+
Sbjct: 315 TVSWNILITGFGQAGSYAKALEVLNLMEESGSEPNEVTYSNMLASCIKARDVLSARAMFD 374
Query: 307 GLGTGSF-VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+ S WN L+ Y + Q + ++F M H+N+ ++V
Sbjct: 375 KISRPSVTTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAV 421
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 77/183 (42%), Gaps = 33/183 (18%)
Query: 28 EVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDV 87
+V C W SM+ + EE + F M G+ P + +C+ L G+ +
Sbjct: 481 DVVC-WNSMISGLAIHSLNEEAFDFFKQMRGNGMMPTESSYASMINSCARLSSVPQGRQI 539
Query: 88 YDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147
+ ++ + DQ+ V ++LID YAKC +
Sbjct: 540 HAQIVKDGY------------------------------DQNVYVGSALIDMYAKCGNMD 569
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
+ F + K++V+WN M+ GYA GF E+ +L + M+ T+ +P+ ++ VL
Sbjct: 570 DARVFFDCMVTKNIVAWNEMIHGYAQNGFGEKAVDLFE--YMLTTEQRPDGVTFIAVLTG 627
Query: 208 CAQ 210
C+
Sbjct: 628 CSH 630
>gi|296085848|emb|CBI31172.3| unnamed protein product [Vitis vinifera]
Length = 644
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 141/290 (48%), Gaps = 22/290 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ Y G + ++ F M+ G PDH V P V K+C+ +KD R G+ V+ +I
Sbjct: 74 WKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCII 133
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCR----YLKV 148
+ + L++++ K +E + + D+ D Y+K YL
Sbjct: 134 RLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDE-----GKTSDVYSKKEKESYYLGS 188
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
F + ++D+VSWN +++G A G E+ ++ EM D++P++ +LS VL
Sbjct: 189 LRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMG--NADLRPDSFTLSSVLPIF 246
Query: 209 AQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWN 257
A+ + GK IHGY +R+ I + C V SC VF L D + WN
Sbjct: 247 AEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWN 306
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
SII+ V++G + L + +++A +KPN V+ S++PAC L L G
Sbjct: 307 SIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLG 356
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/343 (22%), Positives = 147/343 (42%), Gaps = 70/343 (20%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ G +E+ + + M + +RPD F V +E + GK+++ Y
Sbjct: 203 SWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYA 262
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + D D + +SLID YAKC + S
Sbjct: 263 IRNGY------------------------------DADVFIGSSLIDMYAKCTRVDDSCR 292
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + Q D +SWN+++AG G +E +M + + ++PN +S S ++ ACA +
Sbjct: 293 VFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAK--IKPNHVSFSSIMPACAHL 350
Query: 212 KGVKLGKAIHGYVLRHH---------IHLSTAC---GFVICSCSVFNQLSTRDVVV---- 255
+ LGK +HGY++R + + TAC G V + FN ++ ++
Sbjct: 351 TTLHLGKQLHGYIIRMEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLE 410
Query: 256 -WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----LKLAAL----- 304
+ ++ R G++ +A + + D+ +++P ++L AC ++LA
Sbjct: 411 HYAAVADLLGRVGRLEEAYEFISDM---HIEPTGSVWSTLLAACRVHKNIELAEKVSKKL 467
Query: 305 ----PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
PQ +G + L ++Y G + +RK+ + M K +
Sbjct: 468 FTVDPQNIG----AYVLLSNIYSAAGRWKDARKLRIAMRDKGM 506
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 107/247 (43%), Gaps = 65/247 (26%)
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
++W +++ Y G + ++M+ + P+ VL +C +K ++ G+++H
Sbjct: 72 LAWKSIIRCYTSHGLFLHSLSFF--IQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVH 129
Query: 222 GYVLRHHIHLSTACGFVICSCS-------------------------------------- 243
G ++R GF + +C+
Sbjct: 130 GCIIR------LGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKES 183
Query: 244 --------VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
VF + RD+V WN++IS ++G DAL ++R++ A+++P++ T+ SVL
Sbjct: 184 YYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVL 243
Query: 296 PACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLV 344
P + A+ G F+ ++LIDMY +C + S ++F ++P + +
Sbjct: 244 PIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGI 303
Query: 345 SWNVMIS 351
SWN +I+
Sbjct: 304 SWNSIIA 310
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/151 (19%), Positives = 63/151 (41%), Gaps = 22/151 (14%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G ++H + I G + F+GS L++++ +W S++
Sbjct: 255 GKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQ 314
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIK-FEGNAC 101
G ++E + F M+ ++P+H + AC+ L +GK ++ Y+I ++ + N
Sbjct: 315 NGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRMEGVKPNYV 374
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLV 132
+L G ++ F M QD+ +
Sbjct: 375 AFMAVLTACSHAGLVDEAWKYFNSMTQDYRI 405
>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 754
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/346 (24%), Positives = 158/346 (45%), Gaps = 58/346 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WT+M+ G E +++F M +GV D + + AC L GK ++ Y
Sbjct: 248 TWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYT 307
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I ++GN V ++L+D Y+KCR ++++
Sbjct: 308 IRTLYDGN------------------------------IFVGSALVDMYSKCRSIRLAEA 337
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNTISLSGVLAACAQ 210
F ++ K+++SW AM+ GY G EE + EM QTD ++PN +L V+++CA
Sbjct: 338 VFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEM---QTDGIKPNDFTLGSVISSCAN 394
Query: 211 VKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ ++ G H LR +I +S+A CG + + +F+++ D V + ++
Sbjct: 395 LASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTAL 454
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----- 314
+S + + G+ + +DL +++ VKPN VT + VL AC + + +G +
Sbjct: 455 VSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHG 514
Query: 315 -------WNALIDMYGRCGAIQKSRKIFVLMPH-KNLVSWNVMISV 352
+ +ID+Y R G ++++ + MP + + W ++S
Sbjct: 515 IVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSA 560
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 155/317 (48%), Gaps = 25/317 (7%)
Query: 61 VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITS 120
VRP + A S L D +G+ V+ ++ + F A PL+D++ K G +
Sbjct: 145 VRPSRITMSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAK 204
Query: 121 GLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREE 179
+F+EM ++ ++ N++I +C+ ++ + F + +D ++W M+ G G + E
Sbjct: 205 RVFDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSE 264
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----------- 228
++ M + + + +L AC + + GK IH Y +R
Sbjct: 265 ALDVFRRMRAEGVGI--DQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSAL 322
Query: 229 IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288
+ + + C + + +VF +++ ++++ W ++I + ++G +A+ + ++ +KPN
Sbjct: 323 VDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPND 382
Query: 289 VTIVSVLPACLKLAALPQGL---------GTGSF--VWNALIDMYGRCGAIQKSRKIFVL 337
T+ SV+ +C LA+L +G G + V +AL+ +YG+CG+I+ + ++F
Sbjct: 383 FTLGSVISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDE 442
Query: 338 MPHKNLVSWNVMISVYG 354
MP + VS+ ++S Y
Sbjct: 443 MPFHDQVSYTALVSGYA 459
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/308 (25%), Positives = 134/308 (43%), Gaps = 59/308 (19%)
Query: 106 LLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
LL + + GR+ + LF+ M D + N+L+ A R L F+ + Q+D VS+
Sbjct: 51 LLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSALAHARLLPDMDRLFASMPQRDAVSY 110
Query: 165 NAMLAGYALGGFREEVTN-----LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
NA++AG++ G L +E + ++P+ I++SG++ A + + LG+
Sbjct: 111 NALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRITMSGMVMAASALGDRALGRQ 170
Query: 220 IHGYVLR------------------------------------------HHIHLSTACGF 237
+H ++R I C
Sbjct: 171 VHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVVMYNTMITGLLRCKM 230
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
V + VF + RD + W ++++ ++G +ALD+ R + V + T S+L A
Sbjct: 231 VEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTA 290
Query: 298 CLKLAALPQG----------LGTGS-FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
C LAA +G L G+ FV +AL+DMY +C +I+ + +F M KN++SW
Sbjct: 291 CGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISW 350
Query: 347 NVMISVYG 354
MI YG
Sbjct: 351 TAMIVGYG 358
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 129/323 (39%), Gaps = 85/323 (26%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
E G Q+HA+ I + F+GS L++++ +WT+M+ Y
Sbjct: 298 EEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGY 357
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G EE V +F M G++P+ F V +C+ L G + +
Sbjct: 358 GQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLRPYI 417
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
V L+ L+ KCG +E LF+EM F+ D
Sbjct: 418 TVSSALVTLYGKCGSIEDAHRLFDEM-----------PFH-------------------D 447
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
VS+ A+++GYA G +E +L + +M+ ++PN ++ GVL+AC++
Sbjct: 448 QVSYTALVSGYAQFGKAKETIDLFE--KMLLKGVKPNGVTFIGVLSACSR---------- 495
Query: 221 HGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVV-----WNSIISAFVRSGQVVDALDL 275
G V CS F+ + +V + +I + RSG++ +A +
Sbjct: 496 --------------SGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEF 541
Query: 276 LRDVIVANVKPNTVTIVSVLPAC 298
+R + P+ + ++L AC
Sbjct: 542 IRQMPRC---PDAIGWATLLSAC 561
>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
Length = 720
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 168/346 (48%), Gaps = 55/346 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ Y G E+ +++F M+ G+ D V+ C++ + +G+ V+
Sbjct: 112 SWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHS-- 169
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I +K AC R D F N+L+D Y+KC L +
Sbjct: 170 IGVK----ACFSRE--DRFC----------------------NTLLDMYSKCGDLDSAKA 201
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ + +VS+ +M+AGYA G E L +EME + + P+ +++ VL CA+
Sbjct: 202 VFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEME--EEGISPDVYTVTAVLNCCARY 259
Query: 212 KGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ + GK +H ++ L I +S A CG + + VF+++ +D++ WN+II
Sbjct: 260 RLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTII 319
Query: 261 SAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPACLKLAALPQG-------LGTGS 312
+ ++ +AL L ++ P+ T+ VLPAC L+A +G + G
Sbjct: 320 GGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGY 379
Query: 313 F----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
F V N+L+DMY +CGA+ + +F + K+LVSW VMI+ YG
Sbjct: 380 FSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYG 425
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/343 (24%), Positives = 162/343 (47%), Gaps = 54/343 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M G + + LF M+ GV D + V K+ S L+ G+ ++ +++
Sbjct: 12 WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFIL 71
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
K G E S V NSL+ FY K + + +
Sbjct: 72 -------------------KSGFGERNS-----------VGNSLVAFYLKNQRVDSARKV 101
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ ++D++SWN+++ GY G E+ ++ ++M+ + ++ + ++ V A CA +
Sbjct: 102 FDEMTERDVISWNSIINGYVSNGLAEKGLSVF--VQMLVSGIEIDLATIVSVFAGCADSR 159
Query: 213 GVKLGKAIHGYVLRH-----------HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ LG+A+H ++ + + + CG + + +VF ++S R VV + S+I+
Sbjct: 160 LISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIA 219
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGT 310
+ R G +A+ L ++ + P+ T+ +VL C + L +G LG
Sbjct: 220 GYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGF 279
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
FV NAL+DMY +CG++Q++ +F M K+++SWN +I Y
Sbjct: 280 DIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGY 322
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 152/331 (45%), Gaps = 54/331 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
++TSM+ Y G E V LF M ++G+ PD + V C+ + GK V++++
Sbjct: 213 SYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWI 272
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
++ D V+N+L+D YAKC ++ +
Sbjct: 273 KE------------------------------NDLGFDIFVSNALMDMYAKCGSMQEAEL 302
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS+++ KD++SWN ++ GY+ + E +L + + + + P+ +++ VL ACA +
Sbjct: 303 VFSEMRVKDIISWNTIIGGYSKNCYANEALSLFN-LLLEEKRFSPDERTVACVLPACASL 361
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
G+ IHGY++R+ + + CG ++ + +F+ ++++D+V W +I
Sbjct: 362 SAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMI 421
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
+ + G +A+ L + A ++ + ++ VS+L AC + +G + +
Sbjct: 422 AGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKI 481
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMP 339
+ ++DM R G + K+ + MP
Sbjct: 482 EPTVEHYACIVDMLARTGDLIKAYRFIENMP 512
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 11/120 (9%)
Query: 245 FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA- 303
F+++ + WN +++ +SG ++ L + ++ + V+ ++ T V + L +
Sbjct: 1 FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60
Query: 304 ----------LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L G G + V N+L+ Y + + +RK+F M ++++SWN +I+ Y
Sbjct: 61 HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120
>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 152/320 (47%), Gaps = 65/320 (20%)
Query: 46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP 105
Y E +++F +M+ PDH+ P V KACS L + RVG V+D ++ +
Sbjct: 118 YVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVG---------- 167
Query: 106 LLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWN 165
+D + + N+L+ Y KC L+ + ++ +D+VSWN
Sbjct: 168 --------------------LDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWN 207
Query: 166 AMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL 225
+M+AGYA G ++ + EM+ + + T++ + ++ V+
Sbjct: 208 SMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQ---------- 257
Query: 226 RHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK 285
+IH ++F +++ ++++ WN +I+ +V + +A+ L + +K
Sbjct: 258 --YIH------------NMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMK 303
Query: 286 PNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKI 334
P+ VTI S+LPAC L+AL G L + NAL+DMY +CG ++++R +
Sbjct: 304 PDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDV 363
Query: 335 FVLMPHKNLVSWNVMISVYG 354
F M +++VSW M+S YG
Sbjct: 364 FDKMRLRDVVSWTSMMSAYG 383
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 85/168 (50%), Gaps = 23/168 (13%)
Query: 210 QVKGVKLGKAIHG-YVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWN 257
Q G+K +H V+ H+ + +A G + +F++ ++VV +N
Sbjct: 47 QYPGIKTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFN 106
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL-----------AALPQ 306
+I ++V + V+AL + + ++ P+ T VL AC L A +
Sbjct: 107 VMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKV 166
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
GL T F+ NAL+ MYG+CG ++++RK+ MP++++VSWN M++ Y
Sbjct: 167 GLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYA 214
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/277 (20%), Positives = 115/277 (41%), Gaps = 54/277 (19%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W M+ +Y E V+LF M + G++PD + AC +L +G+ ++ Y+
Sbjct: 273 SWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYI 332
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ N ++ LLD++ KCG +E +F++M
Sbjct: 333 EKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKM------------------------- 367
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+ +D+VSW +M++ Y G + L +M+ + P++I+ VL+AC+
Sbjct: 368 -----RLRDVVSWTSMMSAYGRSGQGYDAVALF--AKMLDSGQNPDSIAFVSVLSACSHT 420
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+ G RH+ + T ++ F ++ F R+G+V +
Sbjct: 421 GLLDQG--------RHYFRMMTEQYGIVPRIEHF-----------ACMVDLFGRAGEVEE 461
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
A ++ + ++PN ++L AC + + GL
Sbjct: 462 AYSFIKQM---PMEPNERVWGALLSACRVHSKMDIGL 495
>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g18750, chloroplastic; Flags: Precursor
gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 168/346 (48%), Gaps = 55/346 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ Y G E+ +++F M+ G+ D V+ C++ + +G+ V+
Sbjct: 263 SWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHS-- 320
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I +K AC R D F N+L+D Y+KC L +
Sbjct: 321 IGVK----ACFSRE--DRFC----------------------NTLLDMYSKCGDLDSAKA 352
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ + +VS+ +M+AGYA G E L +EME + + P+ +++ VL CA+
Sbjct: 353 VFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEME--EEGISPDVYTVTAVLNCCARY 410
Query: 212 KGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ + GK +H ++ L I +S A CG + + VF+++ +D++ WN+II
Sbjct: 411 RLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTII 470
Query: 261 SAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPACLKLAALPQG-------LGTGS 312
+ ++ +AL L ++ P+ T+ VLPAC L+A +G + G
Sbjct: 471 GGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGY 530
Query: 313 F----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
F V N+L+DMY +CGA+ + +F + K+LVSW VMI+ YG
Sbjct: 531 FSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYG 576
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/343 (24%), Positives = 162/343 (47%), Gaps = 54/343 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M G + + LF M+ GV D + V K+ S L+ G+ ++ +++
Sbjct: 163 WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFIL 222
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
K G E S V NSL+ FY K + + +
Sbjct: 223 -------------------KSGFGERNS-----------VGNSLVAFYLKNQRVDSARKV 252
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ ++D++SWN+++ GY G E+ ++ ++M+ + ++ + ++ V A CA +
Sbjct: 253 FDEMTERDVISWNSIINGYVSNGLAEKGLSVF--VQMLVSGIEIDLATIVSVFAGCADSR 310
Query: 213 GVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ LG+A+H ++ + + + CG + + +VF ++S R VV + S+I+
Sbjct: 311 LISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIA 370
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGT 310
+ R G +A+ L ++ + P+ T+ +VL C + L +G LG
Sbjct: 371 GYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGF 430
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
FV NAL+DMY +CG++Q++ +F M K+++SWN +I Y
Sbjct: 431 DIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGY 473
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 152/331 (45%), Gaps = 54/331 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
++TSM+ Y G E V LF M ++G+ PD + V C+ + GK V++++
Sbjct: 364 SYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWI 423
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
++ D V+N+L+D YAKC ++ +
Sbjct: 424 KE------------------------------NDLGFDIFVSNALMDMYAKCGSMQEAEL 453
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS+++ KD++SWN ++ GY+ + E +L + + + + P+ +++ VL ACA +
Sbjct: 454 VFSEMRVKDIISWNTIIGGYSKNCYANEALSLFN-LLLEEKRFSPDERTVACVLPACASL 512
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
G+ IHGY++R+ + + CG ++ + +F+ ++++D+V W +I
Sbjct: 513 SAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMI 572
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
+ + G +A+ L + A ++ + ++ VS+L AC + +G + +
Sbjct: 573 AGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKI 632
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMP 339
+ ++DM R G + K+ + MP
Sbjct: 633 EPTVEHYACIVDMLARTGDLIKAYRFIENMP 663
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 87/183 (47%), Gaps = 24/183 (13%)
Query: 193 DMQPNTISLSGVLAACAQVKGVKLGKAI------HGYVLRHHIH-----LSTACGFVICS 241
D+ P T L VL CA K +K GK + +G+V+ ++ + T CG + +
Sbjct: 91 DIDPRT--LCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEA 148
Query: 242 CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
VF+++ + WN +++ +SG ++ L + ++ + V+ ++ T V + L
Sbjct: 149 SRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSL 208
Query: 302 AA-----------LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ L G G + V N+L+ Y + + +RK+F M ++++SWN +I
Sbjct: 209 RSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSII 268
Query: 351 SVY 353
+ Y
Sbjct: 269 NGY 271
>gi|297818196|ref|XP_002876981.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322819|gb|EFH53240.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 693
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 163/344 (47%), Gaps = 29/344 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W ++ Y +G+ +E V +F+ M++ VRP + V ACS VGK ++
Sbjct: 230 SWNVIVRRYLEMGFNDEAVVMFFKMLELNVRPLNHTVSSVMLACSRSLALEVGKVIHAIA 289
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSH 150
+ I + V + D+++KC R+E +F++ +D S + YA + +
Sbjct: 290 VKISVVADTVVSTSIFDMYVKCDRLESARRVFDQTKSKDLKSWTSAMSGYAMSGITREAR 349
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP-NTISLSGVLAACA 209
F + ++++VSWNAML GY E + LD + +++ +++ + ++L +L C+
Sbjct: 350 ELFDLMPERNIVSWNAMLGGYVRA---HEWDDALDFLTLMRKEIEDIDNVTLVWILNVCS 406
Query: 210 QVKGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLST-RDVVVWN 257
+ V++GK HG++ RH ++ CG + + F Q+S RD V WN
Sbjct: 407 GISDVQMGKQAHGFIYRHGYDMNVIVANALLDMYGKCGTLQSANIWFRQMSELRDEVSWN 466
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF---- 313
++++ R G+ AL + + KP+ T+ ++L C + AL G F
Sbjct: 467 ALLTGVARVGRSEQALSFFEGMQM-EAKPSKYTLATLLAGCANIPALNLGKAIHGFLIRN 525
Query: 314 -------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ A++DMY +C + ++F ++L+ WN +I
Sbjct: 526 GYNIDVVIRGAMVDMYSKCRCFDYAIEVFKEAATRDLILWNSII 569
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 157/332 (47%), Gaps = 57/332 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+G Y +++ ++ LM + D+ + CS + D ++GK + ++
Sbjct: 362 SWNAMLGGYVRAHEWDDALDFLTLMRKEIEDIDNVTLVWILNVCSGISDVQMGKQAHGFI 421
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ D + +V N+L+D Y KC L+ ++
Sbjct: 422 YRHGY------------------------------DMNVIVANALLDMYGKCGTLQSANI 451
Query: 152 KFSKIKQ-KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ + +D VSWNA+L G A G E+ + + M+M + +P+ +L+ +LA CA
Sbjct: 452 WFRQMSELRDEVSWNALLTGVARVGRSEQALSFFEGMQM---EAKPSKYTLATLLAGCAN 508
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACG------FVICSC-----SVFNQLSTRDVVVWNSI 259
+ + LGKAIHG+++R+ ++ + C C VF + +TRD+++WNSI
Sbjct: 509 IPALNLGKAIHGFLIRNGYNIDVVIRGAMVDMYSKCRCFDYAIEVFKEAATRDLILWNSI 568
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----- 314
I R+G+ + +L + VKP+ VT ++L AC++ + G S +
Sbjct: 569 IRGCCRNGRSKEVFELFMLLEDEGVKPDHVTFSAILQACIREGHVELGFQYFSSMSTKYL 628
Query: 315 -------WNALIDMYGRCGAIQKSRKIFVLMP 339
++ ++++Y + G +++ + +LMP
Sbjct: 629 ILPQIEHYDCMVELYCKYGCLRQLEEFLLLMP 660
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 81/374 (21%), Positives = 155/374 (41%), Gaps = 86/374 (22%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ G +E+ +F+ M GVR V K+C + D R+ ++ +
Sbjct: 129 SWNAVITACAQNGVSDEVFRMFHRMNRDGVRATETSFAGVLKSCGLVLDLRLLMQLHCAV 188
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + GN +DL S++D Y KC+ + +
Sbjct: 189 VKYGYSGN-------IDL-----------------------ETSIVDVYGKCQVMSDARR 218
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I VSWN ++ Y GF +E + +M++ +++P ++S V+ AC++
Sbjct: 219 VFDEIVNPSDVSWNVIVRRYLEMGFNDEAVVMF--FKMLELNVRPLNHTVSSVMLACSRS 276
Query: 212 KGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRD-------- 252
+++GK IH ++ + T C + + VF+Q ++D
Sbjct: 277 LALEVGKVIHAIAVKISVVADTVVSTSIFDMYVKCDRLESARRVFDQTKSKDLKSWTSAM 336
Query: 253 -----------------------VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289
+V WN+++ +VR+ + DALD L + + V
Sbjct: 337 SGYAMSGITREARELFDLMPERNIVSWNAMLGGYVRAHEWDDALDFLTLMRKEIEDIDNV 396
Query: 290 TIVSVLPACLKLAALPQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIFVLM 338
T+V +L C ++ + G F++ NAL+DMYG+CG +Q + F M
Sbjct: 397 TLVWILNVCSGISDVQMGKQAHGFIYRHGYDMNVIVANALLDMYGKCGTLQSANIWFRQM 456
Query: 339 PH-KNLVSWNVMIS 351
++ VSWN +++
Sbjct: 457 SELRDEVSWNALLT 470
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 119/254 (46%), Gaps = 25/254 (9%)
Query: 123 FEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTN 182
F + FL+N + I+ Y KC + + F ++ ++D SWNA++ A G +EV
Sbjct: 90 FSPLPPSFLLNRA-IEAYGKCGCVDDARELFEQMPERDGGSWNAVITACAQNGVSDEVFR 148
Query: 183 LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH----HIHLSTACGFV 238
+ M + ++ S +GVL +C V ++L +H V+++ +I L T+ V
Sbjct: 149 MFHRMN--RDGVRATETSFAGVLKSCGLVLDLRLLMQLHCAVVKYGYSGNIDLETSIVDV 206
Query: 239 ICSCSV-------FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI 291
C V F+++ V WN I+ ++ G +A+ + ++ NV+P T+
Sbjct: 207 YGKCQVMSDARRVFDEIVNPSDVSWNVIVRRYLEMGFNDEAVVMFFKMLELNVRPLNHTV 266
Query: 292 VSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340
SV+ AC + AL G + + V ++ DMY +C ++ +R++F
Sbjct: 267 SSVMLACSRSLALEVGKVIHAIAVKISVVADTVVSTSIFDMYVKCDRLESARRVFDQTKS 326
Query: 341 KNLVSWNVMISVYG 354
K+L SW +S Y
Sbjct: 327 KDLKSWTSAMSGYA 340
>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
Length = 1702
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 158/346 (45%), Gaps = 57/346 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-GVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
W +++ Y+ Y+E++ F MI + PDHF P V KAC+ + D +G V+
Sbjct: 508 QWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHG- 566
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
L +K G +E D V N+L+ FY ++ +
Sbjct: 567 ------------------LVVKTGLVE-----------DVFVGNALVSFYGTHGFVTDAL 597
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD--MQPNTISLSGVLAAC 208
F + +++LVSWN+M+ ++ GF EE LL EM D P+ +L VL C
Sbjct: 598 QLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVC 657
Query: 209 AQVKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWN 257
A+ + + LGK +HG+ ++ + + + CG + + +F + ++VV WN
Sbjct: 658 AREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWN 717
Query: 258 SIISAFVRSGQVVDALDLLRDVIVA--NVKPNTVTIVSVLPACLKLAALP---------- 305
+++ F G D+LR ++ +VK + VTI++ +P C + LP
Sbjct: 718 TMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSL 777
Query: 306 -QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
Q V NA + Y +CG++ ++++F + K + SWN +I
Sbjct: 778 KQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALI 823
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 140/255 (54%), Gaps = 24/255 (9%)
Query: 122 LFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVT 181
L +E + LV N+ + YAKC L + F I+ K + SWNA++ G+A +
Sbjct: 777 LKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSN--DPRL 834
Query: 182 NLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH------HIHLSTAC 235
+L ++M + + P++ ++ +L+AC+++K ++LGK +HG+++R+ ++LS
Sbjct: 835 SLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLS 894
Query: 236 GFVICS--CSV---FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
++ C C+V F+ + + +V WN++I+ ++++G AL + R +++ ++ ++
Sbjct: 895 LYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGIS 954
Query: 291 IVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
++ V AC L +L G L +F+ +LIDMY + G+I +S K+F +
Sbjct: 955 MMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLK 1014
Query: 340 HKNLVSWNVMISVYG 354
K+ SWN MI YG
Sbjct: 1015 EKSTASWNAMIMGYG 1029
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 134/273 (49%), Gaps = 34/273 (12%)
Query: 111 IKCGRM--EITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAML 168
I+ GR ++ SG + D L +I YA C S F ++ K+L WNA++
Sbjct: 455 IEMGRKIHQLVSGSTRLRNDDVLCTR-IITMYAMCGSPDDSRFVFDALRSKNLFQWNAVI 513
Query: 169 AGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-- 226
+ Y+ +EV EM + TD+ P+ + V+ ACA + V +G A+HG V++
Sbjct: 514 SSYSRNELYDEVLETFIEM-ISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTG 572
Query: 227 --HHIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLR 277
+ + A GFV + +F+ + R++V WNS+I F +G ++ LL
Sbjct: 573 LVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLG 632
Query: 278 DVIVAN----VKPNTVTIVSVLPACLKLAALPQGLGTGSFVW-------------NALID 320
+++ N P+ T+V+VLP C + + GLG G W NAL+D
Sbjct: 633 EMMEENGDGAFMPDVATLVTVLPVCAREREI--GLGKGVHGWAVKLRLDKELVLNNALMD 690
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
MY +CG I ++ IF + +KN+VSWN M+ +
Sbjct: 691 MYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGF 723
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 85/398 (21%), Positives = 169/398 (42%), Gaps = 77/398 (19%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYN 41
+G+ VH ++ G+ F+G+ L+ + +W SM+ +++
Sbjct: 560 IGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFS 619
Query: 42 VLGYYEEIVNLFYLMI----DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
G+ EE L M+ D PD V C+ ++ +GK V+ + + ++
Sbjct: 620 DNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLR-- 677
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
+D++ ++NN+L+D Y+KC + + F
Sbjct: 678 ----------------------------LDKELVLNNALMDMYSKCGCITNAQMIFKMNN 709
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
K++VSWN M+ G++ G ++L +M D++ + +++ + C +
Sbjct: 710 NKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSL 769
Query: 218 KAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
K +H Y L+ + CG + + VF+ + ++ V WN++I +S
Sbjct: 770 KELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQS 829
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVW 315
+LD + ++ + P++ T+ S+L AC KL +L G L FV+
Sbjct: 830 NDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVY 889
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+++ +Y CG + + +F M K+LVSWN +I+ Y
Sbjct: 890 LSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGY 927
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/326 (24%), Positives = 137/326 (42%), Gaps = 55/326 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++G + ++ M G+ PD F + ACS+LK R+GK+V+ ++
Sbjct: 818 SWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFI 877
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I E + V +L L+I CG + LF+ M+
Sbjct: 878 IRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMED----------------------- 914
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
K LVSWN ++ GY GF + + +M+ +Q IS+ V AC+ +
Sbjct: 915 -------KSLVSWNTVITGYLQNGFPDRALGVF--RQMVLYGIQLCGISMMPVFGACSLL 965
Query: 212 KGVKLGKAIHGYVLRHHIHLST--AC---------GFVICSCSVFNQLSTRDVVVWNSII 260
++LG+ H Y L+H + AC G + S VFN L + WN++I
Sbjct: 966 PSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMI 1025
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-----TGSFV- 314
+ G +A+ L ++ P+ +T + VL AC + +GL SF
Sbjct: 1026 MGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGL 1085
Query: 315 ------WNALIDMYGRCGAIQKSRKI 334
+ +IDM GR G + K+ ++
Sbjct: 1086 KPNLKHYACVIDMLGRAGQLDKALRV 1111
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 24/178 (13%)
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYV-----LRHH-------IHLSTACGFVICSCSVFNQ 247
+L +L A + K +++G+ IH V LR+ I + CG S VF+
Sbjct: 441 ALGLLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDA 500
Query: 248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVLPACLKLAALPQ 306
L ++++ WN++IS++ R+ + L+ ++I ++ P+ T V+ AC ++ +
Sbjct: 501 LRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGI 560
Query: 307 GLG-------TG----SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
GL TG FV NAL+ YG G + + ++F +MP +NLVSWN MI V+
Sbjct: 561 GLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVF 618
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 89/200 (44%), Gaps = 36/200 (18%)
Query: 12 IVCGVELC---AFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVC 68
I CG ELC A + + +W +++ Y G+ + + +F M+ G++
Sbjct: 897 IHCG-ELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISM 955
Query: 69 PKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ 128
V+ ACS L R+G++ + Y + E +A FI C
Sbjct: 956 MPVFGACSLLPSLRLGREAHAYALKHLLEDDA---------FIAC--------------- 991
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
SLID YAK + S F+ +K+K SWNAM+ GY + G +E L +EM+
Sbjct: 992 ------SLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQ 1045
Query: 189 MIQTDMQPNTISLSGVLAAC 208
+T P+ ++ GVL AC
Sbjct: 1046 --RTGHNPDDLTFLGVLTAC 1063
>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 934
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 96/389 (24%), Positives = 173/389 (44%), Gaps = 72/389 (18%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMY 40
E QVHAH+I CG+ F+G+ LL + +WTS+M Y
Sbjct: 76 EGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEIEEPNIVSWTSLMVGY 135
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G +E+++++ + GV + V ++C L D +G V
Sbjct: 136 AYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGYQV------------- 182
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
L IK G +D V NSLI + C ++ + C F +K++D
Sbjct: 183 ------LGSVIKSG-----------LDTTVSVANSLISMFGNCDSIEEASCVFDDMKERD 225
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+SWN+++ G E+ +M T + + I++S +L C + ++ G+ +
Sbjct: 226 TISWNSIITASVHNGHCEKSLEYFSQMRY--THAKTDYITISALLPVCGSAQNLRWGRGL 283
Query: 221 HGYVLRHHIHLST-ACGFVICSCS----------VFNQLSTRDVVVWNSIISAFVRSGQV 269
HG V++ + + C ++ S VF+++ RD++ WNS++++ V +G
Sbjct: 284 HGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHVDNGNY 343
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP--------QGLGTGSFVWNALIDM 321
AL+LL +++ N VT + L AC L L GL + NAL+ M
Sbjct: 344 PRALELLIEMLQTRKATNYVTFTTALSACYNLETLKIVHAFVILLGLHHNLIIGNALVTM 403
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
YG+ G++ ++++ +MP ++ V+WN +I
Sbjct: 404 YGKFGSMAAAQRVCKIMPDRDEVTWNALI 432
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 156/344 (45%), Gaps = 53/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W ++M + +G+Y++ + F M++ GVRP +V + AC D M
Sbjct: 25 SWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYVAASLVTAC----------DRSGCM 74
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F+ +A V IKCG + D V SL+ FY ++
Sbjct: 75 TEGAFQVHAHV--------IKCG-----------LACDVFVGTSLLHFYGTFGWVAEVDM 115
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I++ ++VSW +++ GYA G +EV ++ + + + N +++ V+ +C +
Sbjct: 116 VFKEIEEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLR--RDGVYCNENAMATVIRSCGVL 173
Query: 212 KGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSII 260
LG + G V++ + + + C + + VF+ + RD + WNSII
Sbjct: 174 VDKMLGYQVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSII 233
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQGLG 309
+A V +G +L+ + + K + +TI ++LP C L + GL
Sbjct: 234 TASVHNGHCEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLE 293
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ V N+L+ MY + G + + +F M ++L+SWN M++ +
Sbjct: 294 SNVCVCNSLLSMYSQAGKSEDAEFVFHKMRERDLISWNSMMASH 337
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 94/397 (23%), Positives = 170/397 (42%), Gaps = 85/397 (21%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYN 41
LG QV +I G++ + + L+ +F N W S++
Sbjct: 178 LGYQVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASV 237
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G+ E+ + F M + D+ + C ++ R G+ ++ ++ E N C
Sbjct: 238 HNGHCEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVC 297
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
V LL ++ + G+ E D +F+ F K++++DL
Sbjct: 298 VCNSLLSMYSQAGKSE---------DAEFV---------------------FHKMRERDL 327
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
+SWN+M+A + G LL +EM+QT N ++ + L+AC ++ +K+ +H
Sbjct: 328 ISWNSMMASHVDNGNYPRALELL--IEMLQTRKATNYVTFTTALSACYNLETLKI---VH 382
Query: 222 GYV----LRHHIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ-- 268
+V L H++ + A G + + V + RD V WN++I + +
Sbjct: 383 AFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGGHADNKEPN 442
Query: 269 -VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----P-------QGLGTGSFVW 315
++A +LLR+ V N +TIV++L A L L P G +FV
Sbjct: 443 AAIEAFNLLRE---EGVPVNYITIVNLLSAFLSPDDLLDHGMPIHAHIVVAGFELETFVQ 499
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
++LI MY +CG + S IF ++ +KN +WN ++S
Sbjct: 500 SSLITMYAQCGDLNTSNYIFDVLANKNSSTWNAILSA 536
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 100/234 (42%), Gaps = 25/234 (10%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
+ V +SLI YA+C L S+ F + K+ +WNA+L+ A G EE L+ ++
Sbjct: 495 ETFVQSSLITMYAQCGDLNTSNYIFDVLANKNSSTWNAILSANAHYGPGEEALKLI--IK 552
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH-----------HIHLSTACGF 237
M + + S S A + + G+ +H +++H + + CG
Sbjct: 553 MRNDGIHLDQFSFSVAHAIIGNLTLLDEGQQLHSLIIKHGFESNDYVLNATMDMYGKCGE 612
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ + Q +R WN +ISA R G A + +++ ++P+ VT VS+L A
Sbjct: 613 IDDVFRILPQPRSRSQRSWNILISALARHGFFQQAREAFHEMLDLGLRPDHVTFVSLLSA 672
Query: 298 CLKLAALPQGLG------------TGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
C + +GL TG +ID+ GR G + ++ MP
Sbjct: 673 CSHGGLVDEGLAYFSSMSTKFGVPTGIEHCVCIIDLLGRAGKLTEAENFINKMP 726
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 75/345 (21%), Positives = 140/345 (40%), Gaps = 60/345 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SMM + G Y + L M+ ++ AC L+ ++ V+ ++
Sbjct: 329 SWNSMMASHVDNGNYPRALELLIEMLQTRKATNYVTFTTALSACYNLETLKI---VHAFV 385
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + N + L+ ++ K G M A R K+
Sbjct: 386 ILLGLHHNLIIGNALVTMYGKFGSMA-----------------------AAQRVCKI--- 419
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP-NTISLSGVLAACAQ 210
+ +D V+WNA++ G+A +E ++ +++ + P N I++ +L+A
Sbjct: 420 ----MPDRDEVTWNALIGGHADN---KEPNAAIEAFNLLREEGVPVNYITIVNLLSAFLS 472
Query: 211 VKGV-KLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNS 258
+ G IH +++ L T CG + S +F+ L+ ++ WN+
Sbjct: 473 PDDLLDHGMPIHAHIVVAGFELETFVQSSLITMYAQCGDLNTSNYIFDVLANKNSSTWNA 532
Query: 259 IISAFVRSGQVVDALDLL---------RDVIVANVKPNTVTIVSVLPACLKLAAL--PQG 307
I+SA G +AL L+ D +V + +++L +L +L G
Sbjct: 533 ILSANAHYGPGEEALKLIIKMRNDGIHLDQFSFSVAHAIIGNLTLLDEGQQLHSLIIKHG 592
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+ +V NA +DMYG+CG I +I ++ SWN++IS
Sbjct: 593 FESNDYVLNATMDMYGKCGEIDDVFRILPQPRSRSQRSWNILISA 637
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 111/236 (47%), Gaps = 25/236 (10%)
Query: 140 YAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI 199
Y+K ++ + F K+ +++ SWN +++G+ G+ ++ M++ ++P++
Sbjct: 2 YSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFF--CHMLEHGVRPSSY 59
Query: 200 SLSGVLAACAQVKGVKLGK-AIHGYVLR-----------HHIHLSTACGFVICSCSVFNQ 247
+ ++ AC + + G +H +V++ +H G+V VF +
Sbjct: 60 VAASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKE 119
Query: 248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL------ 301
+ ++V W S++ + +G V + + + R + V N + +V+ +C L
Sbjct: 120 IEEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLG 179
Query: 302 -----AALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+ + GL T V N+LI M+G C +I+++ +F M ++ +SWN +I+
Sbjct: 180 YQVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITA 235
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/319 (20%), Positives = 116/319 (36%), Gaps = 75/319 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
++ G+ +HAH++V G EL F+ S L+ ++ W +++
Sbjct: 477 LDHGMPIHAHIVVAGFELETFVQSSLITMYAQCGDLNTSNYIFDVLANKNSSTWNAILSA 536
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
G EE + L M + G+ D F + L G+ ++ +I FE N
Sbjct: 537 NAHYGPGEEALKLIIKMRNDGIHLDQFSFSVAHAIIGNLTLLDEGQQLHSLIIKHGFESN 596
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V +D++ KCG E+D F + + + +
Sbjct: 597 DYVLNATMDMYGKCG----------EIDDVFRI--------------------LPQPRSR 626
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
SWN +++ A GF ++ EM+ ++P+ ++ +L+AC+ V G A
Sbjct: 627 SQRSWNILISALARHGFFQQAREAFH--EMLDLGLRPDHVTFVSLLSACSHGGLVDEGLA 684
Query: 220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
Y G C C II R+G++ +A + + +
Sbjct: 685 ---YFSSMSTKFGVPTGIEHCVC----------------IIDLLGRAGKLTEAENFINKM 725
Query: 280 IVANVKPNTVTIVSVLPAC 298
V P + S+L AC
Sbjct: 726 ---PVPPTDLVWRSLLAAC 741
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
VF+++ R+ WN+++S FVR G A+ ++ V+P++ S++ AC +
Sbjct: 14 VFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYVAASLVTACDRSGC 73
Query: 304 LPQ------------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ + GL FV +L+ YG G + + +F + N+VSW ++
Sbjct: 74 MTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEIEEPNIVSWTSLMV 133
Query: 352 VYG 354
Y
Sbjct: 134 GYA 136
>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
Length = 1753
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 113/442 (25%), Positives = 193/442 (43%), Gaps = 92/442 (20%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN------------------------WTSMMG 38
L Q+H+ +IV G AFL ++++ V+ W S++
Sbjct: 887 LSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILR 946
Query: 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
GY EE + ++ M GV D F P V +AC+ + ++ + V+ +++ + F+
Sbjct: 947 ANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQW 1006
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYA---KCR-YLKVSHCKF 153
N V L+ ++ K GRM+ +FE M V+ N+++ YA C ++
Sbjct: 1007 NLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMG 1066
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG 213
S + +LV+W ++L+ +A G E L M M + +L+ VL+ +
Sbjct: 1067 SAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRM--RGIGATAEALAVVLSVSVDLAA 1124
Query: 214 VKLGKAIHGYVLRH------HIHLSTAC-----GFVICSCSVFNQLSTRDVVVWNSIISA 262
GK IHGYV++ + S C G V + +F ++ T+++V WN++IS+
Sbjct: 1125 FDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISS 1184
Query: 263 ---------------------------------------FVRSGQVVDALDLLRDVIVAN 283
F GQ +AL+L R + +A
Sbjct: 1185 YADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAK 1244
Query: 284 VKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSR 332
VK N+VTI SVL C +LAAL G + V N LI+MY + G+ ++
Sbjct: 1245 VKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGN 1304
Query: 333 KIFVLMPHKNLVSWNVMISVYG 354
+F + +K+L+SWN M++ YG
Sbjct: 1305 LVFEKIENKDLISWNTMVAGYG 1326
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 91/369 (24%), Positives = 173/369 (46%), Gaps = 36/369 (9%)
Query: 17 ELCAFLGSQLLEV-FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKAC 75
E+ +GS LE WTS++ + G + E + LF M +G+ V
Sbjct: 1060 EMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVS 1119
Query: 76 SELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-N 134
+L + GK ++ Y++ FE VK L+ L+ K G + LF E+ +V+ N
Sbjct: 1120 VDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWN 1179
Query: 135 SLIDFYAKCRYLKVSHCKFSKIKQKD--------LVSWNAMLAGYALGGFREEVTNLLDE 186
+LI YA + + F ++++ D +VSW+A++ G+A G EE L
Sbjct: 1180 ALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRR 1239
Query: 187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTAC 235
M++ + ++ N+++++ VL+ CA++ + LG+ IHG+V+R I++ T
Sbjct: 1240 MQLAK--VKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKS 1297
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
G VF ++ +D++ WN++++ + G +A+ +I +P+ VT V+VL
Sbjct: 1298 GSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVL 1357
Query: 296 PACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFVLMP-HKN 342
AC + +G + + ++D+ GR G +Q++ K+ MP N
Sbjct: 1358 SACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPN 1417
Query: 343 LVSWNVMIS 351
W +++
Sbjct: 1418 ACVWGALLN 1426
>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 591
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/401 (24%), Positives = 187/401 (46%), Gaps = 60/401 (14%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G ++HA ++ G+E ++ + L++++ +W M+ Y
Sbjct: 127 GEKIHAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVR 186
Query: 43 LGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+EE V+++ M ++ +P+ AC+ L++ +GK+++DY I+ + +
Sbjct: 187 CKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDY-IANELDLTPI 245
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNN-----SLIDFYAKCRYLKVSHCKFSKI 156
+ LLD++ KCG + + +F+ M +V N S++ Y C L + F +
Sbjct: 246 MGNALLDMYCKCGCVSVAREIFDAM----IVKNVNCWTSMVTGYVICGQLDQARYLFERS 301
Query: 157 KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKL 216
+D+V W AM+ GY E+ L EM++ ++P+ + +L CAQ+ ++
Sbjct: 302 PSRDVVLWTAMINGYVQFNHFEDAIALFGEMQI--RGVEPDKFIVVTLLTGCAQLGALEQ 359
Query: 217 GKAIHGYVLRHHIHL----STA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVR 265
GK IH Y+ + I + STA CG + S +FN L D W SII
Sbjct: 360 GKWIHNYIDENRIKMDAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAM 419
Query: 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---LGTGSFVWN------ 316
+G+ +AL+L + +KP+ +T V+VL AC + +G + S +++
Sbjct: 420 NGKTSEALELFEAMQTCGLKPDDITFVAVLSACGHAGLVEEGRKLFHSMSSIYHIEPNLE 479
Query: 317 ---ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
ID+ GR G +Q++ ++ +P +N +++ +YG
Sbjct: 480 HYGCFIDLLGRAGLLQEAEELVKKLPDQNN---EIIVPLYG 517
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 88/359 (24%), Positives = 161/359 (44%), Gaps = 83/359 (23%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G ++LF + ++GV PD++ P V K + + R G+ ++ +++ E + V
Sbjct: 87 GSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVREGEKIHAFVVKTGLEFDPYVC 146
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
L+D++ + G +E + +FEEM ++D VS
Sbjct: 147 NSLMDMYAELGLVEGFTQVFEEM------------------------------PERDAVS 176
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
WN M++GY EE ++ M+M +++ +PN ++ L+ACA ++ ++LGK IH Y
Sbjct: 177 WNIMISGYVRCKRFEEAVDVYRRMQM-ESNEKPNEATVVSTLSACAVLRNLELGKEIHDY 235
Query: 224 VLRH------------------------------------HIHLSTACGFVIC-----SC 242
+ + S G+VIC +
Sbjct: 236 IANELDLTPIMGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQAR 295
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
+F + +RDVV+W ++I+ +V+ DA+ L ++ + V+P+ +V++L C +L
Sbjct: 296 YLFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLG 355
Query: 303 ALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
AL QG + + V ALI+MY +CG I+KS +IF + + SW +I
Sbjct: 356 ALEQGKWIHNYIDENRIKMDAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSII 414
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 11/121 (9%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP--ACL-- 299
+FN + + ++N +I AFV+ G + A+ L + + V P+ T VL C+
Sbjct: 64 IFNHIHHPSLFIYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGE 123
Query: 300 -----KLAA--LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
K+ A + GL +V N+L+DMY G ++ ++F MP ++ VSWN+MIS
Sbjct: 124 VREGEKIHAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISG 183
Query: 353 Y 353
Y
Sbjct: 184 Y 184
>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 882
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 181/392 (46%), Gaps = 77/392 (19%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCN----------------------WTSMMGMYNVL 43
++HA +I G++ F +L++ + + W S++ ++
Sbjct: 25 RIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVSPAKNVYIWNSIIRAFSKN 84
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G++ + + + + + V PD + P V KAC+ L D +G VY ++ + FE
Sbjct: 85 GWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQILEMGFE------ 138
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
D V N+L+D Y++ L + F ++ +DLVS
Sbjct: 139 ------------------------SDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVS 174
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
WN++++GY+ G+ EE + E+ + + P++ ++S VL A A + VK G+ +HG+
Sbjct: 175 WNSLISGYSSHGYYEEALEIYHELR--NSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGF 232
Query: 224 VLRHHIHLSTACGFVICSC-----------SVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
L+ ++ + + + VF+++ RD V +N++I +++ V ++
Sbjct: 233 TLKSGVNSVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEES 292
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPAC-----LKLAA------LPQGLGTGSFVWNALIDM 321
+ + + + KP+ +T+ SVL AC L LA L G S V N LID+
Sbjct: 293 VKMFLENL-DQFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDV 351
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
Y +CG + +R +F M K+ VSWN +IS Y
Sbjct: 352 YAKCGDMITARDVFNSMECKDTVSWNSIISGY 383
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 97/395 (24%), Positives = 178/395 (45%), Gaps = 78/395 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
E+G V+ ++ G E ++G+ L++++ +W S++ Y
Sbjct: 123 EMGDLVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGY 182
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+ GYYEE + +++ + + + PD F V A + L + G+ ++ + + +
Sbjct: 183 SSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVS 242
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
V LL +++K R +F+EM +D
Sbjct: 243 VVNNGLLAMYLKFSRPTDARRVFDEM------------------------------VVRD 272
Query: 161 LVSWNAMLAGY-ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
V++N M+ GY L E V L+ ++ +P+ ++++ VL AC ++ + L K
Sbjct: 273 SVTYNTMICGYLKLEMVEESVKMFLENLDQF----KPDILTVTSVLCACGHLRDLSLAKY 328
Query: 220 IHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
I+ Y+LR L + CG +I + VFN + +D V WNSIIS +++SG
Sbjct: 329 IYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGD 388
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNA 317
+++A+ L + +++ + + +T + ++ +LA L G G S V NA
Sbjct: 389 LMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIKSGIYIDLSVSNA 448
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
LIDMY +CG + S KIF M + V+WN +IS
Sbjct: 449 LIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISA 483
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/345 (27%), Positives = 155/345 (44%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+ +M+ Y L EE V +F +D+ +PD V AC L+D + K +Y+YM
Sbjct: 275 TYNTMICGYLKLEMVEESVKMFLENLDQ-FKPDILTVTSVLCACGHLRDLSLAKYIYNYM 333
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F + VK N LID YAKC + +
Sbjct: 334 LRAGFVLESTVK------------------------------NILIDVYAKCGDMITARD 363
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ ++ KD VSWN++++GY G E L M +++ Q + I+ +++ ++
Sbjct: 364 VFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEE--QADHITYLMLISLSTRL 421
Query: 212 KGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSII 260
+K GK +H ++ I++ + CG V S +FN + T D V WN++I
Sbjct: 422 ADLKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVI 481
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLG 309
SA VR G L + + V P+ T + LP C LAA L G
Sbjct: 482 SACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYE 541
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + NALI+MY +CG ++ S ++F M +++V+W MI YG
Sbjct: 542 SELQIGNALIEMYSKCGCLESSFRVFERMSRRDVVTWTGMIYAYG 586
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 139/331 (41%), Gaps = 55/331 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ Y G E + LF +M+ + DH + + L D + GK ++
Sbjct: 375 SWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLH--- 431
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
N I SG++ D V+N+LID YAKC + S
Sbjct: 432 ------SNG-----------------IKSGIY----IDLSVSNALIDMYAKCGEVGDSLK 464
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ + D V+WN +++ A F + T L +M + + P+ + L CA +
Sbjct: 465 IFNSMGTLDTVTWNTVIS--ACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPMCASL 522
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+LGK IH +LR I + + CG + S VF ++S RDVV W +I
Sbjct: 523 AAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLESSFRVFERMSRRDVVTWTGMI 582
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
A+ G+ AL+ D+ + + P++V ++++ AC + +GL +
Sbjct: 583 YAYGMYGEGEKALESFVDMEKSGIVPDSVVFIALIYACSHSGLVEKGLACFEKMKTHYKI 642
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMP 339
+ ++D+ R I K+ + MP
Sbjct: 643 DPMIEHYACVVDLLSRSQKISKAEEFIQAMP 673
>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
Length = 602
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 101/395 (25%), Positives = 174/395 (44%), Gaps = 48/395 (12%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLL-------------EVFCN--------WTSMMGMYNV 42
G +VHA ++ G F+ LL +VF WT ++ Y
Sbjct: 110 GEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVC 169
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+ + E+ + LF M + G+ PD V AC L D V K ++ ++ E +A V
Sbjct: 170 VTFPEKALELFRTMREVGLTPDMVAVSTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFV 229
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
L+ + +CG ++ F+E ++ +V N++I + L++ F + +D+
Sbjct: 230 SSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDV 289
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSWN+M+ G+A G +E EME + + PN ++L L+ACA + G IH
Sbjct: 290 VSWNSMIGGFARIGQYQEALTWFHEMEF--SGVSPNALTLLSTLSACASHGALDTGAWIH 347
Query: 222 GYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
YV ++ I + + CG + + +F + + RD+ W SI+ G+
Sbjct: 348 AYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGE 407
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------LGTGSFV--WNAL 318
AL + A V+P+ VT+V VL AC L QG G V + +
Sbjct: 408 KALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGXM 467
Query: 319 IDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+D+ GR G ++++ + + MP N + W +S
Sbjct: 468 VDLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLSA 502
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 97/219 (44%), Gaps = 22/219 (10%)
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG 213
S++ ++ WN M+ G LL M+ ++ ++PN + +L A +
Sbjct: 47 SRLDCANVFVWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQE 106
Query: 214 VKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISA 262
VK G+ +H V+R S ACG V VF+++ +V+W II A
Sbjct: 107 VKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRA 166
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTG 311
+V AL+L R + + P+ V + +V+ AC L L G+
Sbjct: 167 YVCVTFPEKALELFRTMREVGLTPDMVAVSTVVSACGLLGDLGVAKAMHCFIEKSGIEVD 226
Query: 312 SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+FV + LI YG CG++ + + F P KN+V WN MI
Sbjct: 227 AFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMI 265
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 13/124 (10%)
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL--RDVIVANVKPNTVTIVSVLPACLK 300
S ++L +V VWN++I V +G + LL + A ++PN T + +L A +
Sbjct: 44 SAASRLDCANVFVWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVS 103
Query: 301 LAALPQG-------LGTG----SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
+ +G + TG FV AL+ Y CG + K R++F M LV W ++
Sbjct: 104 GQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLI 163
Query: 350 ISVY 353
I Y
Sbjct: 164 IRAY 167
>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
Length = 685
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 162/351 (46%), Gaps = 34/351 (9%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ Y G +E + LF M+ G PD V AC+ L R G+ V+ M
Sbjct: 215 SWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRM 274
Query: 92 I-SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVS 149
+ S +F + + L+D++ KCGR +F+ M + + S+I YAK + +
Sbjct: 275 VKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDA 334
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F ++ +K++V+WN ++A YA EE L + + + + P + VL ACA
Sbjct: 335 QAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLF--VRLKRESVWPTHYTYGNVLNACA 392
Query: 210 QVKGVKLGKAIHGYVLRHHIHLSTA-----------------CGFVICSCSVFNQLSTRD 252
+ ++LG+ H +VL+ + G + VF +++ RD
Sbjct: 393 NLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARD 452
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC------------LK 300
V WN++I + ++G+ DAL L ++ +N +P++VT++ VL AC +
Sbjct: 453 NVSWNAMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQ 512
Query: 301 LAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
G+ + +ID+ GR G +++ ++ MP + V W ++
Sbjct: 513 SMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPDAVLWASLL 563
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 125/286 (43%), Gaps = 62/286 (21%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D + +L+D YAKC + + F + ++++VSWN+++ Y G +E L +
Sbjct: 181 DVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEALALF--VR 238
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH------------IHLSTACG 236
M++ P+ ++L+ V++ACA + + G+ +H +++ + + CG
Sbjct: 239 MMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCG 298
Query: 237 FVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA----LDLLRDVIVA---------- 282
+ VF++++ R VV S+I+ + +S V DA L ++ +VA
Sbjct: 299 RTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAH 358
Query: 283 -----------------NVKPNTVTIVSVLPACLKLAALP-----------------QGL 308
+V P T +VL AC LA L G
Sbjct: 359 NSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGP 418
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ FV N+L+DMY + G+I K+F M ++ VSWN MI Y
Sbjct: 419 ESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYA 464
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 130/283 (45%), Gaps = 26/283 (9%)
Query: 96 FEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFS 154
F G + LL + + G + +F+ M ++ N+L+ A+ + F
Sbjct: 46 FAGETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFG 105
Query: 155 KIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGV 214
I D S+NA++A A G + L M D N S + L+ACA K
Sbjct: 106 AIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMH--ADDFVLNAYSFASALSACASEKAS 163
Query: 215 KLGKAIHGYVLRH----HIHLSTACGFVICSCS-------VFNQLSTRDVVVWNSIISAF 263
+ G+ +H V + +++ TA + C VF+ + R++V WNS+I+ +
Sbjct: 164 RTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCY 223
Query: 264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGSF--- 313
++G V +AL L ++ P+ VT+ SV+ AC LAA +G + + F
Sbjct: 224 EQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFRED 283
Query: 314 --VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ NAL+DMY +CG +++ +F M +++VS MI+ Y
Sbjct: 284 MVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYA 326
>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Brachypodium distachyon]
Length = 670
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/341 (24%), Positives = 157/341 (46%), Gaps = 54/341 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT M+ + G ++ ++ M +G +P+ + AC +++ G VY +
Sbjct: 190 SWTLMISAFAQCGQWDNVLRSLDEMQSEGTKPNKITIISLLSACGQVRAVDKGLWVYARV 249
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
E + ++ L+ +++KCG M D + + + + +
Sbjct: 250 DEYGIEADVDIRNALIGMYVKCGCMS--------------------DAWKTFKGMPIRNT 289
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
K SWN ++ G+ G +E + + EM+ + P+ I+L VL+ AQ+
Sbjct: 290 K----------SWNTLIDGFVQNGKHKEALTMFE--EMLSDGVIPDVITLVSVLSTYAQL 337
Query: 212 KGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ G+ +H Y+ H IH + CG + + +F ++ RD+V W +++
Sbjct: 338 GDLQQGRYLHNYIKDHEIHCDIILQNSLINMYAKCGDMAAAEIIFENMARRDIVSWTAMV 397
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
+V+ Q A +L D+ V +V + + +VS+L AC +L AL +G S++
Sbjct: 398 CGYVKGLQFRTAFNLFDDMKVRDVMASEMALVSLLSACSQLGALDKGREIHSYIKEKSVR 457
Query: 315 ---W--NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
W +AL+DMY +CG I + +IF M HK ++WN MI
Sbjct: 458 TDMWLESALVDMYAKCGCIDAAAEIFSRMRHKQTLAWNAMI 498
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 88/346 (25%), Positives = 156/346 (45%), Gaps = 57/346 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYR---VGKDVYD 89
W M+ YN + + LF M GV PD++ V ++ + ++ G V+
Sbjct: 87 WNCMIRGYNSCHAPMDALELFRAMRRSGVSPDNYTMAAVAQSSAAFASWKGRATGDAVHA 146
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
+ I F DLF+ G LI+FY + ++ +
Sbjct: 147 LVQRIGFAS---------DLFVMSG---------------------LINFYGASKSVEDA 176
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F ++ ++D+VSW M++ +A G + V LDEM+ T +PN I++ +L+AC
Sbjct: 177 RKVFEEMHERDVVSWTLMISAFAQCGQWDNVLRSLDEMQSEGT--KPNKITIISLLSACG 234
Query: 210 QVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNS 258
QV+ V G ++ V + I + CG + + F + R+ WN+
Sbjct: 235 QVRAVDKGLWVYARVDEYGIEADVDIRNALIGMYVKCGCMSDAWKTFKGMPIRNTKSWNT 294
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV---- 314
+I FV++G+ +AL + +++ V P+ +T+VSVL +L L QG +++
Sbjct: 295 LIDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLSTYAQLGDLQQGRYLHNYIKDHE 354
Query: 315 -------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
N+LI+MY +CG + + IF M +++VSW M+ Y
Sbjct: 355 IHCDIILQNSLINMYAKCGDMAAAEIIFENMARRDIVSWTAMVCGY 400
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 160/345 (46%), Gaps = 56/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ + G ++E + +F M+ GV PD V ++L D + G+ +++Y
Sbjct: 291 SWNTLIDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLSTYAQLGDLQQGRYLHNY- 349
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ D I C D ++ NSLI+ YAKC + +
Sbjct: 350 --------------IKDHEIHC---------------DIILQNSLINMYAKCGDMAAAEI 380
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + ++D+VSW AM+ GY G NL D+M++ D+ + ++L +L+AC+Q+
Sbjct: 381 IFENMARRDIVSWTAMVCGYVKGLQFRTAFNLFDDMKV--RDVMASEMALVSLLSACSQL 438
Query: 212 KGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ G+ IH Y+ +R + L +A CG + + +F+++ + + WN++I
Sbjct: 439 GALDKGREIHSYIKEKSVRTDMWLESALVDMYAKCGCIDAAAEIFSRMRHKQTLAWNAMI 498
Query: 261 SAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----- 314
GQ +A+ L ++ + + KP+ +T+ VL AC + + +GL + +
Sbjct: 499 GGLASQGQGKEAVALFEQLLKLRDPKPDAITLKVVLCACTHVGMVDEGLHYFNLMLTLGI 558
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ ++D+ GR G + ++ MP N V W +++
Sbjct: 559 VPDNEHYGCIVDLLGRAGLLDEAYNFIQKMPIQPNPVIWGSLLAA 603
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 106/226 (46%), Gaps = 27/226 (11%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL---AACA 209
F ++ Q + WN M+ GY + L M ++ + P+ +++ V AA A
Sbjct: 76 FDRMAQPTAIVWNCMIRGYNSCHAPMDALELFRAMR--RSGVSPDNYTMAAVAQSSAAFA 133
Query: 210 QVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
KG G A+H +V+ I+ A V + VF ++ RDVV W
Sbjct: 134 SWKGRATGDAVHALVQRIGFASDLFVMSGLINFYGASKSVEDARKVFEEMHERDVVSWTL 193
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV---- 314
+ISAF + GQ + L L ++ KPN +TI+S+L AC ++ A+ +GL + V
Sbjct: 194 MISAFAQCGQWDNVLRSLDEMQSEGTKPNKITIISLLSACGQVRAVDKGLWVYARVDEYG 253
Query: 315 -------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
NALI MY +CG + + K F MP +N SWN +I +
Sbjct: 254 IEADVDIRNALIGMYVKCGCMSDAWKTFKGMPIRNTKSWNTLIDGF 299
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 14/125 (11%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA- 302
VF++++ +VWN +I + +DAL+L R + + V P+ T+ +V + A
Sbjct: 75 VFDRMAQPTAIVWNCMIRGYNSCHAPMDALELFRAMRRSGVSPDNYTMAAVAQSSAAFAS 134
Query: 303 -----------ALPQGLGTGS--FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
AL Q +G S FV + LI+ YG +++ +RK+F M +++VSW +M
Sbjct: 135 WKGRATGDAVHALVQRIGFASDLFVMSGLINFYGASKSVEDARKVFEEMHERDVVSWTLM 194
Query: 350 ISVYG 354
IS +
Sbjct: 195 ISAFA 199
>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Cucumis sativus]
Length = 990
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 108/387 (27%), Positives = 175/387 (45%), Gaps = 53/387 (13%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMID-- 58
+ LG VH + G+ + F+G+ +M+ +Y G+ +E V LF M +
Sbjct: 226 IHLGKSVHGMAVKMGLIMDLFVGN----------AMIALYGKCGFLDEAVELFDKMPEQN 275
Query: 59 --------KGVRPDHFVCPKVYKACSELKDYRVG--KDVYDYMISIKFEGNACVKRPLLD 108
+G + F + Y+A L + G DV + + C +D
Sbjct: 276 LISWNSLIRGFSENGFWL-EAYRAFRSLLESGDGLIPDVATMVTLLP----VCSGEGNVD 330
Query: 109 LFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAML 168
+ + M + GL E+ +V N+LID Y+KC L + F KI+ K +VSWN+M+
Sbjct: 331 VGMVIHGMAVKLGLVHEL----MVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMI 386
Query: 169 AGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH 228
Y+ GF E +LL +M M + M+ N +++ +L AC + + +A+HGY LRH
Sbjct: 387 GAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHS 446
Query: 229 IHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLR 277
CG ++ + VF ++T+ V WN++I ++G + ALD
Sbjct: 447 FQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYF 506
Query: 278 DVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCG 326
++ + P+ +IVS+L AC +L L GL SFV +L+ +Y C
Sbjct: 507 EMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCS 566
Query: 327 AIQKSRKIFVLMPHKNLVSWNVMISVY 353
R F M KN V WN M+S Y
Sbjct: 567 KPFYGRTYFETMGDKNSVCWNAMLSGY 593
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 158/343 (46%), Gaps = 55/343 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +++ Y Y+E ++ F +I +PD+F P + KAC+ D +GK V+
Sbjct: 177 WNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMA 236
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + ++DLF V N++I Y KC +L +
Sbjct: 237 VKMGL---------IMDLF---------------------VGNAMIALYGKCGFLDEAVE 266
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K+ +++L+SWN+++ G++ GF E + + P+ ++ +L C+
Sbjct: 267 LFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGE 326
Query: 212 KGVKLGKAIHGYVLR----HH-------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
V +G IHG ++ H I + + CG + + +F ++ + VV WNS+I
Sbjct: 327 GNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMI 386
Query: 261 SAFVRSGQVVDALDLLRDVIVAN--VKPNTVTIVSVLPACLKLA-----------ALPQG 307
A+ R G V + DLLR + + ++ N VTI+++LPACL+ + +L
Sbjct: 387 GAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHS 446
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ NA I Y +CG++ + +F M K++ SWN +I
Sbjct: 447 FQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVI 489
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 131/246 (53%), Gaps = 24/246 (9%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
L+NN+ I YAKC L + F + K + SWNA++ G+A G + + L EM
Sbjct: 452 LINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNG--DPIKALDFYFEMT 509
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICS----CS--- 243
+ + P+ S+ +L AC ++ ++ GK IHG+VLR+ + +++ + S CS
Sbjct: 510 RLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPF 569
Query: 244 ----VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
F + ++ V WN+++S + ++ +AL L R ++ ++P+ + I S+L AC
Sbjct: 570 YGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACS 629
Query: 300 KLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
+L+AL G L +FV +L+DMY + G + S++IF + K + SWNV
Sbjct: 630 QLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNV 689
Query: 349 MISVYG 354
MI+ +G
Sbjct: 690 MITGFG 695
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 139/279 (49%), Gaps = 36/279 (12%)
Query: 109 LFIKCGR---MEITSGLFE------EMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
L KCG+ +EI L E + DF++N LI Y+ C Y S F ++ K
Sbjct: 113 LLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNK 172
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ-TDMQPNTISLSGVLAACAQVKGVKLGK 218
+L WNA+++GY +E + +E+I T+ QP+ + ++ AC + LGK
Sbjct: 173 NLFQWNALVSGYVRNELYDEAIHTF--LELISVTEFQPDNFTFPCLIKACTGKCDIHLGK 230
Query: 219 AIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
++HG +V I L CGF+ + +F+++ ++++ WNS+I F +G
Sbjct: 231 SVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENG 290
Query: 268 QVVDALDLLRDVIVA--NVKPNTVTIVSVLPAC-----------LKLAALPQGLGTGSFV 314
++A R ++ + + P+ T+V++LP C + A+ GL V
Sbjct: 291 FWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMV 350
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
NALIDMY +CG + ++ +F + +K++VSWN MI Y
Sbjct: 351 CNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAY 389
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 150/333 (45%), Gaps = 55/333 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++G + G + ++ ++ M G+ PD F + AC L + GK+++ ++
Sbjct: 484 SWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFV 543
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ E N+ V LL L+ C + FY +
Sbjct: 544 LRNGLEMNSFVAVSLLSLYFHCSK----------------------PFYGRTY------- 574
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + K+ V WNAML+GY+ E +L +M+ ++P+ I+++ +L AC+Q+
Sbjct: 575 -FETMGDKNSVCWNAMLSGYSQNELPNEALSLF--RQMLSDGLEPDEIAIASILGACSQL 631
Query: 212 KGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ LGK +H + L++ + + GF+ S +FN+L+ ++V WN +I
Sbjct: 632 SALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMI 691
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
+ F GQ A++L D+ ++ +P+ T + VL AC + +GL + +
Sbjct: 692 TGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKL 751
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMPHK 341
+ +IDM GR G + ++ MP +
Sbjct: 752 EPELEHYACVIDMLGRAGRLNEALNFINEMPEE 784
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 104/239 (43%), Gaps = 55/239 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
++ G ++H ++ G+E+ +F+ LL ++ + W +M+
Sbjct: 533 LQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSG 592
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y+ E ++LF M+ G+ PD + ACS+L +GK+V+ + +
Sbjct: 593 YSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFAL------- 645
Query: 100 ACVKRPLL-DLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
K L+ D F+ C SL+D YAK +L S F+++
Sbjct: 646 ---KNSLMEDNFVAC---------------------SLMDMYAKSGFLGHSQRIFNRLNG 681
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
K++ SWN M+ G+ + G + L ++M+ ++D QP+ + GVL AC V G
Sbjct: 682 KEVASWNVMITGFGVHGQGNKAVELFEDMK--RSDKQPDRFTFLGVLQACCHAGLVSEG 738
>gi|242046440|ref|XP_002461091.1| hypothetical protein SORBIDRAFT_02g040530 [Sorghum bicolor]
gi|241924468|gb|EER97612.1| hypothetical protein SORBIDRAFT_02g040530 [Sorghum bicolor]
Length = 695
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 102/344 (29%), Positives = 170/344 (49%), Gaps = 54/344 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT+M+G G + E++ L M +G RPD + V AC ++K+ R G ++
Sbjct: 218 WTAMIGGTVHGGDWLEVMTLLKRMKSEGFRPDSMILATVIPACGKVKELRTGTALH---- 273
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
CV +KCG + D V N+L+D Y KC L +
Sbjct: 274 -------GCV--------VKCG-----------VGVDTCVLNALVDMYCKCARLDFAASL 307
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I KD++SW+ ++AG++ +L EM + + ++PN+ +L+ +L + ++++
Sbjct: 308 FWSIDHKDVISWSTIIAGHSQNRRYHVSVSLFSEM--VASGVKPNSTTLASILPSLSELR 365
Query: 213 GVKLGKAIHGYVLR----HHIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNSIIS 261
+ GK IH + LR H L++A G + + VF D+VV NS+I
Sbjct: 366 LFRYGKEIHCFSLRNGLEHSEFLASALIDFYSRQGSIKEAEIVFEFTPKNDLVVSNSMIG 425
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-------- 313
+V + AL LLR ++ ++P+ VT+VSVLP C + + L QG ++
Sbjct: 426 GYVVNEDSESALRLLRALLKEGLRPDRVTVVSVLPLCNQHSRLLQGKELHAYAIRHNISS 485
Query: 314 ---VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V NAL DMY +CG ++ + +IF+LM +N V++N +IS G
Sbjct: 486 CCSVSNALTDMYCKCGCLELAFEIFLLMTERNTVTYNTLISSLG 529
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 98/394 (24%), Positives = 176/394 (44%), Gaps = 74/394 (18%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCN-----------------------WTSMMGMYNV 42
++HA L+V G L +QL+ + W +++
Sbjct: 62 RLHAALLVRGYRTSTVLAAQLVRAYARLRDGGLGHAVRVFDGMLTRNSFAWNAVIKGLVD 121
Query: 43 LGYYEEIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G + E + ++ M+ D V D F P V KAC+ L G+ V + E +
Sbjct: 122 AGRFSEALQWYWDMVGDGSVVADRFTYPPVLKACAALGVVEQGRKVQE-----NVEADIA 176
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
++F++C +L+D +AKC L + F ++ +DL
Sbjct: 177 RGIAKCNVFVQC---------------------ALVDMFAKCGCLGEARNVFESMEVRDL 215
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
+W AM+ G GG EV LL M+ +P+++ L+ V+ AC +VK ++ G A+H
Sbjct: 216 AAWTAMIGGTVHGGDWLEVMTLLKRMK--SEGFRPDSMILATVIPACGKVKELRTGTALH 273
Query: 222 GYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
G V++ + + T C + + S+F + +DV+ W++II+ ++ +
Sbjct: 274 GCVVKCGVGVDTCVLNALVDMYCKCARLDFAASLFWSIDHKDVISWSTIIAGHSQNRRYH 333
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALI 319
++ L +++ + VKPN+ T+ S+LP+ +L +L GL F+ +ALI
Sbjct: 334 VSVSLFSEMVASGVKPNSTTLASILPSLSELRLFRYGKEIHCFSLRNGLEHSEFLASALI 393
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
D Y R G+I+++ +F P +LV N MI Y
Sbjct: 394 DFYSRQGSIKEAEIVFEFTPKNDLVVSNSMIGGY 427
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 79/375 (21%), Positives = 159/375 (42%), Gaps = 76/375 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ G +H ++ CGV + + + L++++C +W++++
Sbjct: 266 LRTGTALHGCVVKCGVGVDTCVLNALVDMYCKCARLDFAASLFWSIDHKDVISWSTIIAG 325
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
++ Y V+LF M+ GV+P+ + + SEL+ +R GK+++ + + E
Sbjct: 326 HSQNRRYHVSVSLFSEMVASGVKPNSTTLASILPSLSELRLFRYGKEIHCFSLRNGLE-- 383
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+FL + +LIDFY++ +K + F +
Sbjct: 384 ---------------------------HSEFLAS-ALIDFYSRQGSIKEAEIVFEFTPKN 415
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
DLV N+M+ GY + E + L +++ ++P+ +++ VL C Q + GK
Sbjct: 416 DLVVSNSMIGGYVVNEDSE--SALRLLRALLKEGLRPDRVTVVSVLPLCNQHSRLLQGKE 473
Query: 220 IHGYVLRHHIH----LSTACGFVICSC-------SVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H Y +RH+I +S A + C C +F ++ R+ V +N++IS+ + G
Sbjct: 474 LHAYAIRHNISSCCSVSNALTDMYCKCGCLELAFEIFLLMTERNTVTYNTLISSLGKHGH 533
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL------------GTGSFVWN 316
A L + V P+ VT V++L C + +GL ++
Sbjct: 534 AEQAFFLFDLMKRDGVSPDKVTFVALLSCCSHEGLIDKGLCFYDSMLRDYNISPDKEHYS 593
Query: 317 ALIDMYGRCGAIQKS 331
++D+Y R G + +
Sbjct: 594 CIVDLYSRSGRLDAA 608
>gi|302815759|ref|XP_002989560.1| hypothetical protein SELMODRAFT_129917 [Selaginella moellendorffii]
gi|300142738|gb|EFJ09436.1| hypothetical protein SELMODRAFT_129917 [Selaginella moellendorffii]
Length = 744
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 95/341 (27%), Positives = 157/341 (46%), Gaps = 50/341 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+WT+M+ Y G + L+ M ++K VRPD V ACS L D GK++Y
Sbjct: 278 SWTAMITAYAQNGRERLALELYRRMELEKRVRPDRVTYAAVLGACSGLGDLSTGKEIYAR 337
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ S F+ +A +K SL+ + KC L+ +
Sbjct: 338 VCSSDFDVDAALK------------------------------TSLVGLHGKCHCLEDAK 367
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F I +D +++NAMLA YA G ++ NL +M M ++P S + L AC
Sbjct: 368 EVFESISSRDRLAYNAMLAAYAQNGHPDDALNLYRQM-MDLEGVEPTDTSFAVALMACTA 426
Query: 211 VKGVKLGKAIHGYVLRHHIHL-----STACGF------VICSCSVFNQLSTRDVVVWNSI 259
+K + GK++HG + I L +T GF + + +F Q+ +DV ++++
Sbjct: 427 LKDLVTGKSLHGRIQVAGIKLDEVLATTLVGFYGEVGSLEEAERIFEQMPVKDVFSYSAM 486
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-------LPQGLGTGS 312
I A+ ++G A+ + ++ +KP+ V +SVL AC A L G
Sbjct: 487 IGAYSQNGCEGRAMTIYAEMDQQGIKPDEVAFISVLSACSSNLATEVHTEILHAGFEADG 546
Query: 313 FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ AL+ MY + G +++SR+IF M ++ VSW MIS +
Sbjct: 547 ALGTALVCMYAKSGNLEESRRIFGAMKSRDSVSWTAMISAF 587
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 129/262 (49%), Gaps = 26/262 (9%)
Query: 114 GRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYAL 173
GR + + +D++ LV NSLI Y KC L + F +++KD V+WN M+ +
Sbjct: 29 GRQLHAAAIARRLDRETLVANSLIAMYGKCHSLAEAERLFHGLERKDPVTWNTMIGAFTH 88
Query: 174 GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK----AIHGYVLRHHI 229
G +L M N+++ GVL AC+ + + LG+ +I G R +
Sbjct: 89 NGQPRLAVDLYARM----GSGDRNSVTFLGVLEACSALGDLDLGRTVDSSIAGSEWRDDV 144
Query: 230 HLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
+ TA C + + F+ + ++VV WN++++++ R+G AL LR++ +
Sbjct: 145 VVGTAVVGMYGRCRSIEDARQRFDSMPVKNVVSWNALVTSYARNGHPCGALRALREMDLD 204
Query: 283 NVKPNTVTIVSVLPACLKLAALPQGLG-----------TGSFVWNALIDMYGRCGAIQKS 331
K N VT + V+ +L +L G G+ + NALI MYG+ +++S
Sbjct: 205 GTKLNPVTFLLVIEVATQLGSLSLGRSIHLRVTRGGDGGGTRLENALISMYGKLENLEES 264
Query: 332 RKIFVLMPHKNLVSWNVMISVY 353
++F M +K++VSW MI+ Y
Sbjct: 265 LRVFEAMANKDVVSWTAMITAY 286
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 158/349 (45%), Gaps = 40/349 (11%)
Query: 35 SMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM--- 91
S++ MY E LF+ + R D + A + R+ D+Y M
Sbjct: 50 SLIAMYGKCHSLAEAERLFHGL----ERKDPVTWNTMIGAFTHNGQPRLAVDLYARMGSG 105
Query: 92 --ISIKFEG--NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147
S+ F G AC LDL GR +S E D +V +++ Y +CR ++
Sbjct: 106 DRNSVTFLGVLEACSALGDLDL----GRTVDSSIAGSEWRDDVVVGTAVVGMYGRCRSIE 161
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
+ +F + K++VSWNA++ YA G L EM++ T + P T L V+
Sbjct: 162 DARQRFDSMPVKNVVSWNALVTSYARNGHPCGALRALREMDLDGTKLNPVTFLL--VIEV 219
Query: 208 CAQVKGVKLGKAIHGYVLRHHIHLSTACGFVIC-----------SCSVFNQLSTRDVVVW 256
Q+ + LG++IH V R T + S VF ++ +DVV W
Sbjct: 220 ATQLGSLSLGRSIHLRVTRGGDGGGTRLENALISMYGKLENLEESLRVFEAMANKDVVSW 279
Query: 257 NSIISAFVRSGQVVDALDLLRDV-IVANVKPNTVTIVSVLPACLKLAALPQG-------- 307
++I+A+ ++G+ AL+L R + + V+P+ VT +VL AC L L G
Sbjct: 280 TAMITAYAQNGRERLALELYRRMELEKRVRPDRVTYAAVLGACSGLGDLSTGKEIYARVC 339
Query: 308 ---LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ + +L+ ++G+C ++ ++++F + ++ +++N M++ Y
Sbjct: 340 SSDFDVDAALKTSLVGLHGKCHCLEDAKEVFESISSRDRLAYNAMLAAY 388
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 11/79 (13%)
Query: 286 PNTVTIVSVLPAC-----------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKI 334
P+ T+VS + AC L AA+ + L + V N+LI MYG+C ++ ++ ++
Sbjct: 8 PHRTTLVSAISACASSGNLARGRQLHAAAIARRLDRETLVANSLIAMYGKCHSLAEAERL 67
Query: 335 FVLMPHKNLVSWNVMISVY 353
F + K+ V+WN MI +
Sbjct: 68 FHGLERKDPVTWNTMIGAF 86
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 67/325 (20%), Positives = 125/325 (38%), Gaps = 84/325 (25%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLL----------------------EVFCNWTSMMGMYN 41
G +H + V G++L L + L+ +VF ++++M+G Y+
Sbjct: 433 GKSLHGRIQVAGIKLDEVLATTLVGFYGEVGSLEEAERIFEQMPVKDVF-SYSAMIGAYS 491
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G + ++ M +G++PD V ACS + +V+ ++ FE +
Sbjct: 492 QNGCEGRAMTIYAEMDQQGIKPDEVAFISVLSACSS----NLATEVHTEILHAGFEADGA 547
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ L+ ++ K G +E + +F M K +D
Sbjct: 548 LGTALVCMYAKSGNLEESRRIFGAM------------------------------KSRDS 577
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSW AM++ +A G E L M + D + +T L+ +L + +Q GV A
Sbjct: 578 VSWTAMISAFARHGC--EAKLLFQGMALDGIDAKGST--LTSMLVSYSQ-SGV---DAAR 629
Query: 222 GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281
G+ + T SC ++ RSG+V +A +L+ +
Sbjct: 630 GFFMAMQGDFGTCPAAEHYSC----------------LVDLLARSGRVGEAKELVDSM-- 671
Query: 282 ANVKPNTVTIVSVLPACLKLAALPQ 306
++P+ V +++L AC L Q
Sbjct: 672 -PLEPDFVPWMTLLGACKTHGDLEQ 695
>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
Length = 1309
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 156/330 (47%), Gaps = 55/330 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W+ M+G + +G Y F +I G RPD++ P V +AC +LK+ ++G+ ++
Sbjct: 803 SWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHH-- 860
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I KF +D D V +L+D Y KCR ++ +
Sbjct: 861 IVYKFG----------------------------LDLDHFVCAALVDMYGKCREIEDARF 892
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K+ ++DLV+W M+ GYA G E L D+M + + P+ +++ V+ ACA++
Sbjct: 893 LFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMR--EEGVVPDKVAMVTVVFACAKL 950
Query: 212 KGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSII 260
+ + I Y+ R L CG V + +F+++ ++V+ W+++I
Sbjct: 951 GAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMI 1010
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW----- 315
+A+ GQ ALDL ++ + + PN +T+VS+L AC + +GL S +W
Sbjct: 1011 AAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSV 1070
Query: 316 -------NALIDMYGRCGAIQKSRKIFVLM 338
++D+ GR G + ++ K+ M
Sbjct: 1071 RXDVKHYTCVVDLLGRAGRLDEALKLIXSM 1100
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 156/330 (47%), Gaps = 55/330 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W+ M+G + +G Y F +I G RPD++ P V +AC +LK+ ++G+ ++
Sbjct: 127 SWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHH-- 184
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I KF +D D V +L+D Y KCR ++ +
Sbjct: 185 IVYKFG----------------------------LDLDHFVCAALVDMYVKCREIEDARF 216
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K++++DLV+W M+ GYA G E L ++M + + P+ +++ V+ ACA++
Sbjct: 217 LFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMR--EEGVVPDKVAMVTVVFACAKL 274
Query: 212 KGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSII 260
+ + I Y+ R L CG V + +F+++ ++V+ W+++I
Sbjct: 275 GAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMI 334
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW----- 315
+A+ GQ ALDL ++ + + P+ +T+ S+L AC + +GL S +W
Sbjct: 335 AAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSV 394
Query: 316 -------NALIDMYGRCGAIQKSRKIFVLM 338
++D+ GR G + ++ K+ M
Sbjct: 395 RTDVKHYTCVVDLLGRAGRLDEALKLIKSM 424
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 129/259 (49%), Gaps = 40/259 (15%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYA--------LGGFR 177
M ++ +V N LI FY+ R L ++ F + +D VSW+ M+ G+A G FR
Sbjct: 90 MLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFR 149
Query: 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH------GYVLRHHIHL 231
E +I+ +P+ +L V+ AC +K +++G+ IH G L H +
Sbjct: 150 E----------LIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCA 199
Query: 232 STACGFVIC-----SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286
+ +V C + +F+++ RD+V W +I + G+ ++L L + V P
Sbjct: 200 ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVP 259
Query: 287 NTVTIVSVLPACLKLAALPQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIF 335
+ V +V+V+ AC KL A+ + ++ A+IDMY +CG ++ +R+IF
Sbjct: 260 DKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIF 319
Query: 336 VLMPHKNLVSWNVMISVYG 354
M KN++SW+ MI+ YG
Sbjct: 320 DRMEEKNVISWSAMIAAYG 338
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 126/259 (48%), Gaps = 40/259 (15%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYA--------LGGFR 177
M Q+ +V N L+ FY+ R L ++ F + +D VSW+ M+ G+A G FR
Sbjct: 766 MLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFR 825
Query: 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST---- 233
E +I+ +P+ +L V+ AC +K +++G+ IH V + + L
Sbjct: 826 E----------LIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCA 875
Query: 234 -------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286
C + + +F+++ RD+V W +I + G ++L L + V P
Sbjct: 876 ALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVP 935
Query: 287 NTVTIVSVLPACLKLAALPQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIF 335
+ V +V+V+ AC KL A+ + ++ A+IDM+ +CG ++ +R+IF
Sbjct: 936 DKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIF 995
Query: 336 VLMPHKNLVSWNVMISVYG 354
M KN++SW+ MI+ YG
Sbjct: 996 DRMEEKNVISWSAMIAAYG 1014
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 90/203 (44%), Gaps = 33/203 (16%)
Query: 16 VELCAFLGSQLLEV-FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKA 74
+E FL ++ E WT M+G Y G E + LF M ++GV PD V A
Sbjct: 887 IEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFA 946
Query: 75 CSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNN 134
C++L + + DY+ KF+ + + ++D+ KCG +E +F+ M+
Sbjct: 947 CAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRME------- 999
Query: 135 SLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDM 194
+K+++SW+AM+A Y G + +L M+++ +
Sbjct: 1000 -----------------------EKNVISWSAMIAAYGYHGQGRKALDLFP--MMLRSGI 1034
Query: 195 QPNTISLSGVLAACAQVKGVKLG 217
PN I+L +L AC+ V+ G
Sbjct: 1035 LPNKITLVSLLYACSHAGLVEEG 1057
>gi|222622042|gb|EEE56174.1| hypothetical protein OsJ_05117 [Oryza sativa Japonica Group]
Length = 545
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/346 (25%), Positives = 166/346 (47%), Gaps = 27/346 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
++TS+M ++ L ++ + +++F I G RPD F A L D R+G V+ +
Sbjct: 86 SFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQRIGSVVHGLI 145
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSH 150
+ V L+D++ +CG+ E +F+ M +D + S++ Y KC + +
Sbjct: 146 FRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKCVGVDSAL 205
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ K VSW A++ G+ ++ + L +M+ +PN I++ GVL+ACA
Sbjct: 206 SFFYQMPMKSTVSWTALITGHVQD--KQPIQALELFGKMLLEGHRPNHITIVGVLSACAD 263
Query: 211 VKGVKLGKAIHGY-----------VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ + LG+AIHGY V + + G + + SVF ++ +D W ++
Sbjct: 264 IGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTWTTM 323
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------ 307
IS+F G A++L D++ + + PN+VT VSVL AC + +G
Sbjct: 324 ISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVSVLSACSHAGLIQEGRELFDKMREVYH 383
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ + ++D+ GR G ++++ + M ++V W ++S
Sbjct: 384 IDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVIWRSLLSA 429
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/250 (19%), Positives = 108/250 (43%), Gaps = 45/250 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+++ + + + LF M+ +G RP+H V AC+++ +G+ ++ Y
Sbjct: 218 SWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSACADIGALDLGRAIHGY- 276
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
G + +V N+L+D YAK + +
Sbjct: 277 -----------------------------GSKSNATTNIIVTNALMDMYAKSGSIASAFS 307
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +++ KD +W M++ + + G + L +M+++ + PN+++ VL+AC+
Sbjct: 308 VFEEVQMKDAFTWTTMISSFTVQGNGRKAVELF--WDMLRSGILPNSVTFVSVLSACSHA 365
Query: 212 KGVKLGKAIHGYV---------LRHH---IHLSTACGFVICSCSVFNQLSTR-DVVVWNS 258
++ G+ + + L H+ + L G + + ++ + + D+V+W S
Sbjct: 366 GLIQEGRELFDKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVIWRS 425
Query: 259 IISAFVRSGQ 268
++SA + G
Sbjct: 426 LLSACLAHGN 435
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 23/168 (13%)
Query: 209 AQVKGVKLGKAIHGYVLRHHIH---LSTAC---------GFVICSCSVFNQLSTRDVVVW 256
Q K ++ + IH L H +H S +C G + +F+++ D++ +
Sbjct: 28 TQCKTIRELQRIHAQALTHGLHPNQQSISCKIFRSYAEFGRPADAGRLFDEIPHPDIISF 87
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LP 305
S++S ++ A+ + I + +P+ V L A L
Sbjct: 88 TSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQRIGSVVHGLIFR 147
Query: 306 QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
GL + V NAL+DMY RCG + +R +F M K+ V+W M+ Y
Sbjct: 148 CGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGY 195
>gi|147784524|emb|CAN61725.1| hypothetical protein VITISV_032420 [Vitis vinifera]
Length = 763
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 96/347 (27%), Positives = 163/347 (46%), Gaps = 56/347 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVR-PDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W SM+ ++ LGY E + F M+ +GV P+ F+ V+ ACS L G+ ++
Sbjct: 232 SWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHG- 290
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+SIKF + +D SL D YAKC L +
Sbjct: 291 -MSIKFG----------------------------LGRDVFAGCSLCDMYAKCGLLSCAR 321
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F +I + DLV+WNA++AG+A GG +E +M + P+ I++ +L AC
Sbjct: 322 VVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMR--HQGLIPDEITVRSLLCACTS 379
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTA-CGFVI---CSCS-------VFNQLS-TRDVVVWNS 258
+ G +HGY+ + + L C ++ CS F ++ D+V WN+
Sbjct: 380 PSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNA 439
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQG 307
I++A + Q + LL+ + ++ +P+ +T+ +VL A + AL G
Sbjct: 440 ILTACMHHDQAEEVFGLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTG 499
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L V N LID+Y +CG+++ +RKIF + + ++VSW+ +I Y
Sbjct: 500 LNCDISVTNGLIDLYAKCGSLKTARKIFDSVINPDVVSWSSLILGYA 546
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 156/344 (45%), Gaps = 54/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTS++ Y+ G + ++ M+ GV PD F + KACS L D +G+ ++ ++
Sbjct: 131 SWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHV 190
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ +F + + L+ ++ K +N +ID L V
Sbjct: 191 LKSEFGAHIIAQNALISMYTK--------------------SNVIID------ALDV--- 221
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS++ +DL+SW +M+AG++ G+ E EM + Q PN V +AC+ +
Sbjct: 222 -FSRMATRDLISWGSMIAGFSQLGYELEALCYFKEM-LHQGVYLPNEFIFGSVFSACSSL 279
Query: 212 KGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ G+ +HG ++ + + CG + C+ VF Q+ D+V WN+II
Sbjct: 280 LQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAII 339
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------- 313
+ F G +A+ + + P+ +T+ S+L AC + L QG+ +
Sbjct: 340 AGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHGYINKMGLD 399
Query: 314 ----VWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
V N L+ MY +C ++ + F M + +LVSWN +++
Sbjct: 400 LDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTA 443
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 144/305 (47%), Gaps = 57/305 (18%)
Query: 74 ACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN 133
ACS L+ G+ ++D+M+ K P D +
Sbjct: 72 ACSYLRSLEHGRKIHDHMLKSK-------SHP-----------------------DLTLQ 101
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD-EMEMIQT 192
N +++ Y KC LK + F + ++++VSW +++AGY+ G + N L+ +M+Q+
Sbjct: 102 NHILNMYGKCGSLKDAQKVFDAMPERNVVSWTSVIAGYSQNG---QGGNALEFYFQMLQS 158
Query: 193 DMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICS 241
+ P+ + ++ AC+ + + LG+ +H +VL+ I + T +I +
Sbjct: 159 GVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNVIIDA 218
Query: 242 CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK-PNTVTIVSVLPACLK 300
VF++++TRD++ W S+I+ F + G ++AL ++++ V PN SV AC
Sbjct: 219 LDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSS 278
Query: 301 L-----------AALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L ++ GLG F +L DMY +CG + +R +F + +LV+WN +
Sbjct: 279 LLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAI 338
Query: 350 ISVYG 354
I+ +
Sbjct: 339 IAGFA 343
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 148/345 (42%), Gaps = 57/345 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +++ + G +E + F M +G+ PD + AC+ + G V+ Y+
Sbjct: 335 WNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHGYIN 394
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ +D D V N+L+ YAKC L+ +
Sbjct: 395 KMG------------------------------LDLDVPVCNTLLTMYAKCSELRDAIFF 424
Query: 153 FSKIK-QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +++ DLVSWNA+L EEV LL M + Q +P+ I+L+ VL A A+
Sbjct: 425 FEEMRCNADLVSWNAILTACMHHDQAEEVFGLLKLMCISQ--HRPDYITLTNVLGASAET 482
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+++G +H Y L+ I L CG + + +F+ + DVV W+S+I
Sbjct: 483 VSIEIGNQVHCYALKTGLNCDISVTNGLIDLYAKCGSLKTARKIFDSVINPDVVSWSSLI 542
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---LGTGSFVW-- 315
+ + G +AL L + + +VKPN VT V VL AC + + +G GT +
Sbjct: 543 LGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWQLYGTMEKEFGI 602
Query: 316 -------NALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ ++D+ R G + ++ M ++V W +++
Sbjct: 603 VPTREHCSCMVDLLARAGCLNEAEAFIHQMAFDPDIVVWKTLLAA 647
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 86/172 (50%), Gaps = 22/172 (12%)
Query: 204 VLAACAQVKGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRD 252
+++AC+ ++ ++ G+ IH ++L+ H +++ CG + + VF+ + R+
Sbjct: 69 LISACSYLRSLEHGRKIHDHMLKSKSHPDLTLQNHILNMYGKCGSLKDAQKVFDAMPERN 128
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----- 307
VV W S+I+ + ++GQ +AL+ ++ + V P+ T S++ AC L + G
Sbjct: 129 VVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHA 188
Query: 308 ------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G NALI MY + I + +F M ++L+SW MI+ +
Sbjct: 189 HVLKSEFGAHIIAQNALISMYTKSNVIIDALDVFSRMATRDLISWGSMIAGF 240
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 14/133 (10%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W+S++ Y GY EE + LF M V+P+H V ACS + G +Y M
Sbjct: 537 SWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWQLYGTM 596
Query: 92 -----ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM--DQDFLVNNSLIDFYAKCR 144
I E +C ++DL + G + +M D D +V +L+ A C+
Sbjct: 597 EKEFGIVPTREHCSC----MVDLLARAGCLNEAEAFIHQMAFDPDIVVWKTLL---AACK 649
Query: 145 YLKVSHCKFSKIK 157
+ + + + +K
Sbjct: 650 SVHQALARRTNLK 662
>gi|302817788|ref|XP_002990569.1| hypothetical protein SELMODRAFT_131810 [Selaginella moellendorffii]
gi|300141737|gb|EFJ08446.1| hypothetical protein SELMODRAFT_131810 [Selaginella moellendorffii]
Length = 564
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 95/396 (23%), Positives = 168/396 (42%), Gaps = 84/396 (21%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+E G Q H+ + G+E L S L+ ++ W M+
Sbjct: 75 LEEGKQFHSRFVESGLESSLILDSALMNMYGRCGSAEEARKIFDRIPVKNVVCWNVMIAA 134
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G++ E + L+Y D ++PD V AC+ + +DV
Sbjct: 135 YAQNGHFSEALELYY---DMNLKPDRVTFLNVLHACTLESGRLIHQDV------------ 179
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+++GL ++D V N+L++ + KC L + F +I +
Sbjct: 180 ------------------VSAGL----ERDKFVGNALVNMFGKCGSLSDAKRVFDRIAFR 217
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D++SWNA+++ Y G R+E L M+ + +QPN+++ +L AC+ ++ ++
Sbjct: 218 DVISWNALMSVYIQQGHRKEAFELFKRMD--KAGLQPNSVTYLSLLPACSSLEQLR---E 272
Query: 220 IHGYVLRHHIHLSTACGFVIC----------SCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
IH + + G + S +VF ++ R VV W +I V G
Sbjct: 273 IHQELADQGLEQDEQVGNTLITAYNKFSLEDSVAVFERMKRRSVVSWTCMIMGMVEHGYG 332
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNAL 318
ALDL R+++V V+P+ V +V L AC + L +G + T FV A+
Sbjct: 333 GRALDLYREMVVEGVRPDAVALVCALDACTSVENLAEGRKIHRLVEGTTMVTDVFVATAV 392
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
++MYG+CG ++ +F M + +WN +I Y
Sbjct: 393 VNMYGKCGKFAEAEAVFQGMKTTTVATWNSLIGAYA 428
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/335 (25%), Positives = 150/335 (44%), Gaps = 52/335 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W M+G Y G ++ + LF M+D G+R D ACS + GK +
Sbjct: 25 SWNLMLGAYCNNGSGDQALELFKQMVDVHGIRADRVTFVTAATACSLVGSLEEGKQFHSR 84
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ E + + L++++ +CG E +F+
Sbjct: 85 FVESGLESSLILDSALMNMYGRCGSAEEARKIFD-------------------------- 118
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+I K++V WN M+A YA G E L +M +++P+ ++ VL AC
Sbjct: 119 ----RIPVKNVVCWNVMIAAYAQNGHFSEALELYYDM-----NLKPDRVTFLNVLHACTL 169
Query: 211 VKG-------VKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAF 263
G V G +V +++ CG + + VF++++ RDV+ WN+++S +
Sbjct: 170 ESGRLIHQDVVSAGLERDKFVGNALVNMFGKCGSLSDAKRVFDRIAFRDVISWNALMSVY 229
Query: 264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL--------PQGLGTGSFVW 315
++ G +A +L + + A ++PN+VT +S+LPAC L L QGL V
Sbjct: 230 IQQGHRKEAFELFKRMDKAGLQPNSVTYLSLLPACSSLEQLREIHQELADQGLEQDEQVG 289
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
N LI Y + +++ S +F M +++VSW MI
Sbjct: 290 NTLITAYNKF-SLEDSVAVFERMKRRSVVSWTCMI 323
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 120/232 (51%), Gaps = 22/232 (9%)
Query: 140 YAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI 199
Y KC ++ + F+ IK+ SWN ML Y G ++ L +M + ++ + +
Sbjct: 2 YGKCGSVEEARAVFNSIKRSSCFSWNLMLGAYCNNGSGDQALELFKQMVDVH-GIRADRV 60
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQL 248
+ AC+ V ++ GK H + + S CG + +F+++
Sbjct: 61 TFVTAATACSLVGSLEEGKQFHSRFVESGLESSLILDSALMNMYGRCGSAEEARKIFDRI 120
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-------LKL 301
++VV WN +I+A+ ++G +AL+L D+ N+KP+ VT ++VL AC +
Sbjct: 121 PVKNVVCWNVMIAAYAQNGHFSEALELYYDM---NLKPDRVTFLNVLHACTLESGRLIHQ 177
Query: 302 AALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ GL FV NAL++M+G+CG++ ++++F + ++++SWN ++SVY
Sbjct: 178 DVVSAGLERDKFVGNALVNMFGKCGSLSDAKRVFDRIAFRDVISWNALMSVY 229
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/397 (23%), Positives = 169/397 (42%), Gaps = 81/397 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
+E G +H ++ G+E F+G+ L+ +F +W ++M +
Sbjct: 169 LESGRLIHQDVVSAGLERDKFVGNALVNMFGKCGSLSDAKRVFDRIAFRDVISWNALMSV 228
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G+ +E LF M G++P+ + ACS L+ R
Sbjct: 229 YIQQGHRKEAFELFKRMDKAGLQPNSVTYLSLLPACSSLEQLRE---------------- 272
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ + L D + ++QD V N+LI Y K L+ S F ++K++
Sbjct: 273 --IHQELAD---------------QGLEQDEQVGNTLITAYNKFS-LEDSVAVFERMKRR 314
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+VSW M+ G G+ +L EM+ ++P+ ++L L AC V+ + G+
Sbjct: 315 SVVSWTCMIMGMVEHGYGGRALDLY--REMVVEGVRPDAVALVCALDACTSVENLAEGRK 372
Query: 220 IH----GYVLRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH G + + ++TA CG + +VF + T V WNS+I A+ + G
Sbjct: 373 IHRLVEGTTMVTDVFVATAVVNMYGKCGKFAEAEAVFQGMKTTTVATWNSLIGAYAQHGH 432
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WN 316
DAL L + ++ +P+ VT++ L AC L L + S + +
Sbjct: 433 ATDALKLYERMELSGTRPDGVTLLCALFACSHLGLLDRAREFYSGMVEDYQVEAVPAHFG 492
Query: 317 ALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
L+D++ R G I ++ ++ MP ++ +W +++
Sbjct: 493 CLVDLFCRAGWIDEAEELIASMPVRPHISAWTALLNA 529
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
MYG+CG+++++R +F + + SWN+M+ Y
Sbjct: 1 MYGKCGSVEEARAVFNSIKRSSCFSWNLMLGAY 33
>gi|296089760|emb|CBI39579.3| unnamed protein product [Vitis vinifera]
Length = 459
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/347 (27%), Positives = 166/347 (47%), Gaps = 54/347 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
+ SM+ Y++ G E + LF M ++G+ PD F + K+CS + D R+GK V+ +I
Sbjct: 75 FNSMIKGYSLCGPSENSLLLFSQMKNRGIWPDEFTFAPLLKSCSGICDNRIGKGVHGVVI 134
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHC 151
+ FE + ++ ++DL+ CGRME +F+EM D+D
Sbjct: 135 VVGFERFSSIRIGIIDLYTSCGRMEDAKKVFDEMLDRD---------------------- 172
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
++ + +VSWN+M+AG G E L EM +P+ ++ +L CA++
Sbjct: 173 ----MRDRSVVSWNSMIAGLEQSGRDGEALELF--REMWDHGFEPDDATVVTILPVCARL 226
Query: 212 KGVKLGKAIHGY-----VLRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
V +G+ IH Y +LR I + + CG + + VFN++ ++VV WN++
Sbjct: 227 GAVDVGEWIHSYAESSRLLRDFISVGNSLVDFYCKCGILETAWRVFNEMPQKNVVSWNAM 286
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG--LGTGSFV--- 314
IS +G+ DL ++I V+PN T V VL C + +G L T V
Sbjct: 287 ISGLTFNGKGELGADLFEEMINKGVRPNDATFVGVLSCCAHAGLVERGRNLFTSMTVDHK 346
Query: 315 -------WNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISVY 353
+ ++D+ R G ++++R + MP + N V W ++S Y
Sbjct: 347 MEPKLEHFGCMVDLLARNGCMEEARDLVRTMPMRPNAVLWGSLLSAY 393
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 122/227 (53%), Gaps = 30/227 (13%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + + +L+ +N+M+ GY+L G E L +M+ + P+ + + +L +C+ +
Sbjct: 64 FHQTQNPNLLLFNSMIKGYSLCGPSENSLLLFSQMK--NRGIWPDEFTFAPLLKSCSGIC 121
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRD-----VVVW 256
++GK +HG V+ I L T+CG + + VF+++ RD VV W
Sbjct: 122 DNRIGKGVHGVVIVVGFERFSSIRIGIIDLYTSCGRMEDAKKVFDEMLDRDMRDRSVVSW 181
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF--- 313
NS+I+ +SG+ +AL+L R++ +P+ T+V++LP C +L A+ G S+
Sbjct: 182 NSMIAGLEQSGRDGEALELFREMWDHGFEPDDATVVTILPVCARLGAVDVGEWIHSYAES 241
Query: 314 ---------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
V N+L+D Y +CG ++ + ++F MP KN+VSWN MIS
Sbjct: 242 SRLLRDFISVGNSLVDFYCKCGILETAWRVFNEMPQKNVVSWNAMIS 288
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 113/262 (43%), Gaps = 44/262 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ G E + LF M D G PD + C+ L VG+ ++ Y
Sbjct: 180 SWNSMIAGLEQSGRDGEALELFREMWDHGFEPDDATVVTILPVCARLGAVDVGEWIHSYA 239
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
S + LL FI G NSL+DFY KC L+ +
Sbjct: 240 ESSR----------LLRDFISVG-------------------NSLVDFYCKCGILETAWR 270
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+++ QK++VSWNAM++G G E +L +EM I ++PN + GVL+ CA
Sbjct: 271 VFNEMPQKNVVSWNAMISGLTFNGKGELGADLFEEM--INKGVRPNDATFVGVLSCCAHA 328
Query: 212 KGVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTR-DVVVWNS 258
V+ G+ + + H + L G + + + + R + V+W S
Sbjct: 329 GLVERGRNLFTSMTVDHKMEPKLEHFGCMVDLLARNGCMEEARDLVRTMPMRPNAVLWGS 388
Query: 259 IISAFVRSGQVVDALDLLRDVI 280
++SA+ G V A ++++I
Sbjct: 389 LLSAYRTIGDVKHAECAVKELI 410
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 27/159 (16%)
Query: 220 IHGYVLRHHIHLSTA-CGFVICSCS----------VFNQLSTRDVVVWNSIISAFVRSGQ 268
IH ++LRHH+H S I C VF+Q +++++NS+I + G
Sbjct: 28 IHAHILRHHLHQSNQILSHFISVCGALDKMGYANLVFHQTQNPNLLLFNSMIKGYSLCGP 87
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKL-----------AALPQGLGTGSFVWNA 317
++L L + + P+ T +L +C + + G S +
Sbjct: 88 SENSLLLFSQMKNRGIWPDEFTFAPLLKSCSGICDNRIGKGVHGVVIVVGFERFSSIRIG 147
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNL-----VSWNVMIS 351
+ID+Y CG ++ ++K+F M +++ VSWN MI+
Sbjct: 148 IIDLYTSCGRMEDAKKVFDEMLDRDMRDRSVVSWNSMIA 186
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 15/175 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY--- 88
+W +M+ G E +LF MI+KGVRP+ V C+ G++++
Sbjct: 282 SWNAMISGLTFNGKGELGADLFEEMINKGVRPNDATFVGVLSCCAHAGLVERGRNLFTSM 341
Query: 89 --DYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD--QDFLVNNSLIDFYAKCR 144
D+ + K E C ++DL + G ME L M + ++ SL+ Y
Sbjct: 342 TVDHKMEPKLEHFGC----MVDLLARNGCMEEARDLVRTMPMRPNAVLWGSLLSAYRTIG 397
Query: 145 YLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI 199
+K + C ++ + L WN+ Y L DE+E ++ M+ I
Sbjct: 398 DVKHAECAVKELIE--LEPWNS--GNYVLLSNVYAEDGKWDEVEKVRALMKEKNI 448
>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Brachypodium distachyon]
Length = 822
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/396 (23%), Positives = 169/396 (42%), Gaps = 75/396 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q H + VE A + + L++++C +WT+M+
Sbjct: 231 LEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKLFDCMENRNLVSWTTMIAG 290
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y E + +F+ + +G +PD F C + +C L G+ V+ + I E +
Sbjct: 291 YMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAIWQGRQVHAHAIKANLESD 350
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
VK L+D++ KC + +FE + +D
Sbjct: 351 EYVKNSLIDMYAKCEHLTEARAVFEALAED------------------------------ 380
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D +S+NAM+ GY+ G ++ +M ++P+ ++ +L + ++L K
Sbjct: 381 DAISYNAMIEGYSRLGDLAGAIDVFSKMRY--CSLKPSPLTFVSLLGVSSSQSAIELSKQ 438
Query: 220 IHGYVLRHHIHLSTACG-----------FVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IHG +++ L G V + +VFN + RD+V+WN++I ++ Q
Sbjct: 439 IHGLIVKSGTSLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQ 498
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWNA 317
+A+ L + V+ + PN T V+++ L ++ G + V NA
Sbjct: 499 GEEAVKLFNQLQVSGLAPNEFTFVALVTVASTLVSMFHGQQFHAQIIKAGADSDHHVSNA 558
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
LIDMY +CG I++ R +F K+++ WN MIS Y
Sbjct: 559 LIDMYAKCGFIKEGRLLFESTLGKDVICWNSMISTY 594
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/393 (22%), Positives = 171/393 (43%), Gaps = 75/393 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ G QVH + G++ ++G+ L+ ++ WT+++
Sbjct: 130 VSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITG 189
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y+ +G + LF M GVRPD FV ACS L G+ + Y I E +
Sbjct: 190 YSQIGQGGVALELFGKMGLDGVRPDRFVLASAVSACSALGFLEGGRQTHGYAYRIAVETD 249
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
A V L+DL+ KC R+ + LF+ M+ +
Sbjct: 250 ASVINALIDLYCKCSRLSLARKLFDCME------------------------------NR 279
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+LVSW M+AGY E + ++ Q QP+ + + +L +C + + G+
Sbjct: 280 NLVSWTTMIAGYMQNSCDAEAMAMF--WQLSQEGWQPDVFACASILNSCGSLAAIWQGRQ 337
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H + ++ + I + C + + +VF L+ D + +N++I + R G
Sbjct: 338 VHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYSRLGD 397
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVL-----PACLKLAALPQGLGTGS------FVWNA 317
+ A+D+ + ++KP+ +T VS+L + ++L+ GL S + ++
Sbjct: 398 LAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTSLDLYAGSS 457
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
LID+Y + ++ ++ +F LM ++++V WN MI
Sbjct: 458 LIDVYSKFSLVEDAKAVFNLMHNRDMVIWNAMI 490
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 118/247 (47%), Gaps = 22/247 (8%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D + N L+ Y+K ++ + F ++ K+LVSW + ++ +A G E+ L +
Sbjct: 45 DLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCEEDAVALFAAFQ 104
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGF 237
PN L+ L ACAQ + V G+ +HG YV I+L G
Sbjct: 105 RASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVGC 164
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ + VF+ L ++ V W ++I+ + + GQ AL+L + + V+P+ + S + A
Sbjct: 165 IDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVSA 224
Query: 298 CLKLAALPQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
C L L G T + + NALID+Y +C + +RK+F M ++NLVSW
Sbjct: 225 CSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKLFDCMENRNLVSW 284
Query: 347 NVMISVY 353
MI+ Y
Sbjct: 285 TTMIAGY 291
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/348 (22%), Positives = 152/348 (43%), Gaps = 60/348 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLF--YLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
+W S + M+ G E+ V LF + G P+ F+ +AC++ + G+ V+
Sbjct: 79 SWGSAISMHAQHGCEEDAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFGQQVHG 138
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
+ I +GN V +LI+ YAK + +
Sbjct: 139 VAVRIGLDGN------------------------------VYVGTALINLYAKVGCIDAA 168
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + K+ V+W A++ GY+ G L +M + ++P+ L+ ++AC+
Sbjct: 169 MLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGL--DGVRPDRFVLASAVSACS 226
Query: 210 QVKGVKLGKAIHGYVLRHHIHLSTACGFV------ICSCS-------VFNQLSTRDVVVW 256
+ ++ G+ HGY R I + T + C CS +F+ + R++V W
Sbjct: 227 ALGFLEGGRQTHGYAYR--IAVETDASVINALIDLYCKCSRLSLARKLFDCMENRNLVSW 284
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG--------- 307
++I+ ++++ +A+ + + +P+ S+L +C LAA+ QG
Sbjct: 285 TTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAIWQGRQVHAHAIK 344
Query: 308 --LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L + +V N+LIDMY +C + ++R +F + + +S+N MI Y
Sbjct: 345 ANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGY 392
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 87/378 (23%), Positives = 164/378 (43%), Gaps = 45/378 (11%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRP 63
G QVHAH I +E ++ + L++ MY + E +F + +
Sbjct: 335 GRQVHAHAIKANLESDEYVKNSLID----------MYAKCEHLTEARAVFEALAED---- 380
Query: 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITS--- 120
D + + S L D DV+ M + + LL + +E++
Sbjct: 381 DAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIH 440
Query: 121 GLFEEMDQ--DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFRE 178
GL + D +SLID Y+K ++ + F+ + +D+V WNAM+ G A E
Sbjct: 441 GLIVKSGTSLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQGE 500
Query: 179 EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR------HH---- 228
E L +++++ + + PN + ++ + + + G+ H +++ HH
Sbjct: 501 EAVKLFNQLQV--SGLAPNEFTFVALVTVASTLVSMFHGQQFHAQIIKAGADSDHHVSNA 558
Query: 229 -IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
I + CGF+ +F +DV+ WNS+IS + + GQ +AL + R + V+PN
Sbjct: 559 LIDMYAKCGFIKEGRLLFESTLGKDVICWNSMISTYAQHGQAEEALYVFRMMGGTGVEPN 618
Query: 288 TVTIVSVLPACLKLAALPQGL------------GTGSFVWNALIDMYGRCGAIQKSRKIF 335
VT V VL AC + +GL G+ + ++++++GR G + +++
Sbjct: 619 YVTFVGVLSACAHAGLVDEGLRHFDFMKTKYAIEPGTEHYASVVNLFGRSGKLHAAKEFI 678
Query: 336 VLMPHKNLVS-WNVMISV 352
MP + + W ++S
Sbjct: 679 ERMPIEPAAAVWRSLLSA 696
>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 152/320 (47%), Gaps = 65/320 (20%)
Query: 46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP 105
Y E +++F +M+ PDH+ P V KACS L + RVG V+D ++ +
Sbjct: 118 YVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVG---------- 167
Query: 106 LLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWN 165
+D + + N+L+ Y KC L+ + ++ +D+VSWN
Sbjct: 168 --------------------LDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWN 207
Query: 166 AMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL 225
+M+AGYA G ++ + EM+ + + T++ + ++ V+
Sbjct: 208 SMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQ---------- 257
Query: 226 RHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK 285
+IH ++F +++ ++++ WN +I+ +V + +A+ L + +K
Sbjct: 258 --YIH------------NMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMK 303
Query: 286 PNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKI 334
P+ VTI S+LPAC L+AL G L + NAL+DMY +CG ++++R +
Sbjct: 304 PDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDV 363
Query: 335 FVLMPHKNLVSWNVMISVYG 354
F M +++VSW M+S YG
Sbjct: 364 FDKMRLRDVVSWTSMMSAYG 383
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 85/168 (50%), Gaps = 23/168 (13%)
Query: 210 QVKGVKLGKAIHG-YVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWN 257
Q G+K +H V+ H+ + +A G + +F++ ++VV +N
Sbjct: 47 QYPGIKTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFN 106
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL-----------AALPQ 306
+I ++V + V+AL + + ++ P+ T VL AC L A +
Sbjct: 107 VMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKV 166
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
GL T F+ NAL+ MYG+CG ++++RK+ MP++++VSWN M++ Y
Sbjct: 167 GLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYA 214
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/277 (20%), Positives = 114/277 (41%), Gaps = 54/277 (19%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W M+ +Y E V+LF M + G++PD + AC +L +G+ ++ Y+
Sbjct: 273 SWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYI 332
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
N ++ LLD++ KCG +E +F++M
Sbjct: 333 EKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKM------------------------- 367
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+ +D+VSW +M++ Y G + L +M+ + P++I+ VL+AC+
Sbjct: 368 -----RLRDVVSWTSMMSAYGRSGQGYDAVALF--AKMLDSGQNPDSIAFVSVLSACSHT 420
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+ G RH+ + T ++ F ++ F R+G+V +
Sbjct: 421 GLLDQG--------RHYFRMMTEQYGIVPRIEHF-----------ACMVDLFGRAGEVEE 461
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
A ++ + ++PN ++L AC + + GL
Sbjct: 462 AYSFIKQM---PMEPNERVWGALLSACRVHSKMDIGL 495
>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
Length = 602
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 101/395 (25%), Positives = 174/395 (44%), Gaps = 48/395 (12%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLL-------------EVFCN--------WTSMMGMYNV 42
G +VHA ++ G F+ LL +VF WT ++ Y
Sbjct: 110 GEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVC 169
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+ + E+ + LF M + G+ PD V AC L D V K ++ ++ E +A V
Sbjct: 170 VTFPEKALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFV 229
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
L+ + +CG ++ F+E ++ +V N++I + L++ F + +D+
Sbjct: 230 SSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDV 289
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSWN+M+ G+A G +E EME + + PN ++L L+ACA + G IH
Sbjct: 290 VSWNSMIGGFARIGQYQEALTWFHEMEF--SGVSPNALTLLSTLSACASHGALDTGAWIH 347
Query: 222 GYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
YV ++ I + + CG + + +F + + RD+ W SI+ G+
Sbjct: 348 AYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGE 407
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------LGTGSFV--WNAL 318
AL + A V+P+ VT+V VL AC L QG G V + +
Sbjct: 408 KALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGCM 467
Query: 319 IDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+D+ GR G ++++ + + MP N + W +S
Sbjct: 468 VDLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLSA 502
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 97/219 (44%), Gaps = 22/219 (10%)
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG 213
S++ ++ WN M+ G LL M+ ++ ++PN + +L A +
Sbjct: 47 SRLDCANVFVWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQE 106
Query: 214 VKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISA 262
VK G+ +H V+R S ACG V VF+++ +V+W II A
Sbjct: 107 VKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRA 166
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTG 311
+V AL+L R + + P+ V I +V+ AC L L G+
Sbjct: 167 YVCVTFPEKALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKSGIEVD 226
Query: 312 SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+FV + LI YG CG++ + + F P KN+V WN MI
Sbjct: 227 AFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMI 265
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 13/124 (10%)
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL--RDVIVANVKPNTVTIVSVLPACLK 300
S ++L +V VWN++I V +G + LL + A ++PN T + +L A +
Sbjct: 44 SAASRLDCANVFVWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVS 103
Query: 301 -----------LAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
+ + G FV AL+ Y CG + K R++F M LV W ++
Sbjct: 104 GQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLI 163
Query: 350 ISVY 353
I Y
Sbjct: 164 IRAY 167
>gi|218189919|gb|EEC72346.1| hypothetical protein OsI_05579 [Oryza sativa Indica Group]
Length = 545
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/346 (25%), Positives = 166/346 (47%), Gaps = 27/346 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
++TS+M ++ L ++ + +++F I G RPD F A L D R+G V+ +
Sbjct: 86 SFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQRIGSVVHGLI 145
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSH 150
+ V L+D++ +CG+ E +F+ M +D + S++ Y KC + +
Sbjct: 146 FRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKCVGVDSAL 205
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ K VSW A++ G+ ++ + L +M+ +PN I++ GVL+ACA
Sbjct: 206 SFFYQMPMKSTVSWTALITGHVQD--KQPIQALELFGKMLLEGHRPNHITIVGVLSACAD 263
Query: 211 VKGVKLGKAIHGY-----------VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ + LG+AIHGY V + + G + + SVF ++ +D W ++
Sbjct: 264 IGALDLGRAIHGYGSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTWTTM 323
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------ 307
IS+F G A++L D++ + + PN+VT VSVL AC + +G
Sbjct: 324 ISSFTVQGNGRKAVELFWDMLRSGILPNSVTFVSVLSACSHAGLIQEGRELFDKMREVYH 383
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ + ++D+ GR G ++++ + M ++V W ++S
Sbjct: 384 IDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVIWRSLLSA 429
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/250 (19%), Positives = 108/250 (43%), Gaps = 45/250 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+++ + + + LF M+ +G RP+H V AC+++ +G+ ++ Y
Sbjct: 218 SWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSACADIGALDLGRAIHGY- 276
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
G + +V N+L+D YAK + +
Sbjct: 277 -----------------------------GSKSNATTNIIVTNALMDMYAKSGSIASAFS 307
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +++ KD +W M++ + + G + L +M+++ + PN+++ VL+AC+
Sbjct: 308 VFEEVQMKDAFTWTTMISSFTVQGNGRKAVELF--WDMLRSGILPNSVTFVSVLSACSHA 365
Query: 212 KGVKLGKAIHGYV---------LRHH---IHLSTACGFVICSCSVFNQLSTR-DVVVWNS 258
++ G+ + + L H+ + L G + + ++ + + D+V+W S
Sbjct: 366 GLIQEGRELFDKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVIWRS 425
Query: 259 IISAFVRSGQ 268
++SA + G
Sbjct: 426 LLSACLAHGN 435
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 23/168 (13%)
Query: 209 AQVKGVKLGKAIHGYVLRHHIH---LSTAC---------GFVICSCSVFNQLSTRDVVVW 256
Q K ++ + IH L H +H S +C G + +F+++ D++ +
Sbjct: 28 TQCKTIRELQRIHAQALTHGLHPNQQSISCKIFRSYAEFGRPADAGRLFDEIPHPDIISF 87
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LP 305
S++S ++ A+ + I + +P+ V L A L
Sbjct: 88 TSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGALSASGGLGDQRIGSVVHGLIFR 147
Query: 306 QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
GL + V NAL+DMY RCG + +R +F M K+ V+W M+ Y
Sbjct: 148 CGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGY 195
>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 802
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 165/341 (48%), Gaps = 33/341 (9%)
Query: 46 YEEIVNLF--YLMIDKGVRPDHFV---CPKVYK----ACSELKDYRVGKDVYDYMISIKF 96
+EEI+ LF + + V H + P++Y AC + +GK V+ + + F
Sbjct: 35 FEEIIELFCQQNRLKEAVDYLHRIPQPSPRLYSTLIAACLRHRKLELGKRVHAHTKASNF 94
Query: 97 EGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSK 155
+ L+ ++ KCG + LF+E+ Q L + N++I YA ++ + F +
Sbjct: 95 IPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDE 154
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
+ +D SWNA+++GY G+ E +L M+ ++ N +LS LAA A + ++
Sbjct: 155 MPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESS-NCNMFTLSSALAAAAAISSLR 213
Query: 216 LGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
GK IHGY++R + L CG + + +F+Q++ +D+V W ++I
Sbjct: 214 RGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCF 273
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSF 313
G+ + L RD++ + V+PN T VL AC LAA G SF
Sbjct: 274 EDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSF 333
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+AL+ +Y +CG + +R++F MP +LVSW +I Y
Sbjct: 334 AASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYA 374
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 151/334 (45%), Gaps = 56/334 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W +++ Y G+Y E ++LF +M + + + F A + + R GK+++ Y
Sbjct: 162 SWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGY 221
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+I SGL E+D+ +V +L+D Y KC L +
Sbjct: 222 LIR--------------------------SGL--ELDE--VVWTALLDLYGKCGSLNEAR 251
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ KD+VSW M+ G ++E +L +++ + ++PN + +GVL ACA
Sbjct: 252 GIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLF--RDLMGSGVRPNEYTFAGVLNACAD 309
Query: 211 VKGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ ++GK +HGY+ R +H+ + CG + VFNQ+ D+V W S+
Sbjct: 310 LAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSL 369
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----- 314
I + ++GQ AL ++ + KP+ +T V VL AC + GL V
Sbjct: 370 IVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHG 429
Query: 315 -------WNALIDMYGRCGAIQKSRKIFVLMPHK 341
+ +ID+ R G +++ I MP K
Sbjct: 430 LVHTADHYACVIDLLARSGRFKEAENIIDNMPMK 463
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/316 (21%), Positives = 131/316 (41%), Gaps = 75/316 (23%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNV 42
G ++H +LI G+EL + + LL+++ +WT+M+
Sbjct: 215 GKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFE 274
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G +E +LF ++ GVRP+ + V AC++L ++GK+V+ YM + ++ +
Sbjct: 275 DGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFA 334
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L+ ++ KCG E +F +M + DLV
Sbjct: 335 ASALVHVYSKCGNTETARRVFNQM------------------------------PRPDLV 364
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW +++ GYA G + + ++++ +P+ I+ GVL+AC V +G
Sbjct: 365 SWTSLIVGYAQNGQPDMALQFFE--SLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFH 422
Query: 223 YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
V H + TA + +C +I RSG+ +A +++ ++
Sbjct: 423 SVKEKHGLVHTADHY---AC----------------VIDLLARSGRFKEAENIIDNM--- 460
Query: 283 NVKPNTVTIVSVLPAC 298
+KP+ S+L C
Sbjct: 461 PMKPDKFLWASLLGGC 476
>gi|449433319|ref|XP_004134445.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Cucumis sativus]
Length = 606
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 166/346 (47%), Gaps = 56/346 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WT+++ G + + F M+ VRP+ F P V KA + L+ GK ++
Sbjct: 75 TWTALIAGSVQNGCFVSALLHFSDMLSDCVRPNDFTFPCVLKASTGLRMDTTGKQLHAL- 133
Query: 92 ISIKFEGNACVKRPLL-DLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
VK L+ D+F+ C S+ D Y+K +L ++
Sbjct: 134 ---------AVKEGLINDVFVGC---------------------SVFDMYSKLGFLNDAY 163
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ ++L +WNA ++ L G E+ +++ +E+++ +P++I+ L AC+
Sbjct: 164 KVFDEMPHRNLETWNAYISNSVLHGRPED--SVIAFIELLRVGGKPDSITFCAFLNACSD 221
Query: 211 VKGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
G+ G +HG+++R ++ +S CG V CS VF+++ R+ V W+S+
Sbjct: 222 KLGLGPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSL 281
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS------- 312
I+A+V++ + A L +++P + SVL AC L+ + G +
Sbjct: 282 IAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACV 341
Query: 313 ----FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
FV +AL+DMYG+CG+I + + F MP +NLVSWN ++ Y
Sbjct: 342 EQNIFVASALVDMYGKCGSIDNAEQAFNAMPERNLVSWNALLGGYA 387
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 120/248 (48%), Gaps = 27/248 (10%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
Q+ V+N LIDFY KC ++ S F ++ +++ VSW++++A Y E+ + L +
Sbjct: 242 QNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLF--L 299
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTA-------CG 236
+ D++P +S VL ACA + ++ G+++ ++ +I +++A CG
Sbjct: 300 RARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCG 359
Query: 237 FVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVL 295
+ + FN + R++V WN+++ + G A+ LL ++ A + P+ V+++ L
Sbjct: 360 SIDNAEQAFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICAL 419
Query: 296 PACLKLAALPQGLG------------TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
AC + L G+ G + L+D+ GR G ++ + MP
Sbjct: 420 SACSRAGDLKTGMKIFESMKERYGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPFPPT 479
Query: 344 VS-WNVMI 350
+S W ++
Sbjct: 480 ISIWGALL 487
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 114/242 (47%), Gaps = 24/242 (9%)
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
N L++ YAK +L + + +V+W A++AG G V+ LL +M+
Sbjct: 46 NHLVNMYAKLDHLNSAKLILELAPCRSVVTWTALIAGSVQNGCF--VSALLHFSDMLSDC 103
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSC 242
++PN + VL A ++ GK +H ++ + + + GF+ +
Sbjct: 104 VRPNDFTFPCVLKASTGLRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAY 163
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL-KL 301
VF+++ R++ WN+ IS V G+ D++ +++ KP+++T + L AC KL
Sbjct: 164 KVFDEMPHRNLETWNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCAFLNACSDKL 223
Query: 302 AALP----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
P G G V N LID YG+CG ++ S +F M +N VSW+ +I+
Sbjct: 224 GLGPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIA 283
Query: 352 VY 353
Y
Sbjct: 284 AY 285
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 31/189 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W+S++ Y E+ LF + + P F+ V AC+ L + G+ V
Sbjct: 277 SWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALA 336
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ ACV +Q+ V ++L+D Y KC + +
Sbjct: 337 V------KACV------------------------EQNIFVASALVDMYGKCGSIDNAEQ 366
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ + +++LVSWNA+L GYA G + LL+EM + P+ +SL L+AC++
Sbjct: 367 AFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTS-AAGIVPSYVSLICALSACSRA 425
Query: 212 KGVKLGKAI 220
+K G I
Sbjct: 426 GDLKTGMKI 434
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 23/175 (13%)
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYVLR------------HHIHLSTACGFVICSCSVFNQ 247
SL+ V+ V+ LG+A H +L+ H +++ + + +
Sbjct: 8 SLASVVELAVSVRSSLLGRAAHAQILKTLKTPFPAFLYNHLVNMYAKLDHLNSAKLILEL 67
Query: 248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA----- 302
R VV W ++I+ V++G V AL D++ V+PN T VL A L
Sbjct: 68 APCRSVVTWTALIAGSVQNGCFVSALLHFSDMLSDCVRPNDFTFPCVLKASTGLRMDTTG 127
Query: 303 ------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
A+ +GL FV ++ DMY + G + + K+F MPH+NL +WN IS
Sbjct: 128 KQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAYIS 182
>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
Length = 707
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 105/344 (30%), Positives = 161/344 (46%), Gaps = 58/344 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKA--CSELKDYRVGKDVYD 89
+WT+M+ Y +E + +F LM + FV V A C E D GK V+
Sbjct: 180 SWTTMISGYASKQMAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCPEFVD--SGKQVH- 236
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
CV +K G +E S L N+L+ YAKC L S
Sbjct: 237 -----------CV-------VVKNGVLEFVSVL-----------NALVTMYAKCGNLNYS 267
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F K+ ++W+A++ GY+ G + L +M P+ +L GVL AC+
Sbjct: 268 LMLFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHY--AGFVPSEFTLVGVLKACS 325
Query: 210 QVKGVKLGKAIHGYVLRH----HIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNS 258
V ++ GK HGY+L+ I+ +TA GF + F+ L D+V+W S
Sbjct: 326 DVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTS 385
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------G 307
II+ +V++G+ +AL + + + + PN +T+ SVL AC LAAL Q G
Sbjct: 386 IIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAALEQGKQIHARTIKYG 445
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
LG + +AL MY +CG++++ IF M +++VSWN MIS
Sbjct: 446 LGPELSIRSALSTMYAKCGSLEEGVLIFRRMLQRDIVSWNAMIS 489
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 145/325 (44%), Gaps = 55/325 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W++++ Y+ G + + LF M G P F V KACS++ GK + Y+
Sbjct: 281 TWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYL 340
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ +E +L+D YAK + +
Sbjct: 341 LKSGYE------------------------------TQIYTATALVDMYAKFGFTGDARK 370
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + + DLV W +++AGY G EE ++ M+M + PN ++++ VL AC+ +
Sbjct: 371 GFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQM--RKILPNELTMASVLKACSNL 428
Query: 212 KGVKLGKAIHGYVLRHHI--------HLST---ACGFVICSCSVFNQLSTRDVVVWNSII 260
++ GK IH +++ + LST CG + +F ++ RD+V WN++I
Sbjct: 429 AALEQGKQIHARTIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFRRMLQRDIVSWNAMI 488
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA--- 317
S ++G +AL+L ++ + KP+ +T V+VL AC + + +G + +++
Sbjct: 489 SGLSQNGHGREALELFEEMRLEGTKPDHITFVTVLSACSHMGIVKRGWAYFNMMFDEFCL 548
Query: 318 ---------LIDMYGRCGAIQKSRK 333
++D+ R G + ++++
Sbjct: 549 VPRVEHYACMVDVLSRAGKLNEAKE 573
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 119/247 (48%), Gaps = 24/247 (9%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D V +SL++FY K + + F ++ +++LVSW M++GYA +E + M
Sbjct: 146 DVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGYASKQMAKEALGVFGLMR 205
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGF 237
+++ ++ N + VL+A + V GK +H V+++ + + CG
Sbjct: 206 LVEGNL--NEFVFTSVLSALVCPEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGN 263
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ S +F S ++ + W+++I+ + ++G AL L + A P+ T+V VL A
Sbjct: 264 LNYSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKA 323
Query: 298 CLKLAALPQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
C +AA+ +G T ++ AL+DMY + G +RK F + +LV W
Sbjct: 324 CSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLW 383
Query: 347 NVMISVY 353
+I+ Y
Sbjct: 384 TSIIAGY 390
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 115/254 (45%), Gaps = 36/254 (14%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM- 187
++L NN LI FYAKC +L + F +K K++VS+N ++ G + G + +N + E+
Sbjct: 43 NYLANN-LIKFYAKCGHLHGAKLVFENLKHKNVVSYNCLIHGLSHNGSKG--SNFVLELF 99
Query: 188 -EMIQTDMQPNTISLSGVLAACA------------QVKGVKLGKAIHGYVLRHHIHLSTA 234
MI ++ P+ + GV A A V G+K +V ++
Sbjct: 100 RRMIANNILPDAHTFPGVFTAAALNLGCNFDARQVHVLGIKTASIDDVFVGSSLVNFYCK 159
Query: 235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV 294
G V + +F+++ R++V W ++IS + +AL + + + N SV
Sbjct: 160 VGCVFEARKLFDRMPERNLVSWTTMISGYASKQMAKEALGVFGLMRLVEGNLNEFVFTSV 219
Query: 295 LPACLKLAALPQGLGTGS---------------FVWNALIDMYGRCGAIQKSRKIFVLMP 339
L A + P+ + +G V NAL+ MY +CG + S +F +
Sbjct: 220 LSALV----CPEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFEMCS 275
Query: 340 HKNLVSWNVMISVY 353
KN ++W+ +I+ Y
Sbjct: 276 DKNAITWSALITGY 289
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 100/240 (41%), Gaps = 53/240 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+E G Q H +L+ G E + + L++++ WTS++
Sbjct: 330 IEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAG 389
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G EE ++++ M + + P+ V KACS L GK ++ I
Sbjct: 390 YVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAALEQGKQIHARTIKYGLGPE 449
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
++ L ++ KCG +E + L+ F ++ Q+
Sbjct: 450 LSIRSALSTMYAKCGSLE----------EGVLI--------------------FRRMLQR 479
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSWNAM++G + G E L +EM + T +P+ I+ VL+AC+ + VK G A
Sbjct: 480 DIVSWNAMISGLSQNGHGREALELFEEMRLEGT--KPDHITFVTVLSACSHMGIVKRGWA 537
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 34/189 (17%)
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIHGYVLR------------HHIHLSTACGFVICSCS 243
P S +L A K +K G+ +H ++++ + I CG + +
Sbjct: 5 PQNRSFYNLLIQYADQKSLKKGQILHAHIIKIPYLSSCNYLANNLIKFYAKCGHLHGAKL 64
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVD--ALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
VF L ++VV +N +I +G L+L R +I N+ P+ T P
Sbjct: 65 VFENLKHKNVVSYNCLIHGLSHNGSKGSNFVLELFRRMIANNILPDAHT----FPGVFTA 120
Query: 302 AALPQG------------LGTGS----FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
AAL G + T S FV ++L++ Y + G + ++RK+F MP +NLVS
Sbjct: 121 AALNLGCNFDARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVS 180
Query: 346 WNVMISVYG 354
W MIS Y
Sbjct: 181 WTTMISGYA 189
>gi|15218851|ref|NP_171853.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180299|sp|Q9LR69.1|PPR8_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g03540
gi|9280645|gb|AAF86514.1|AC002560_7 F21B7.16 [Arabidopsis thaliana]
gi|91805735|gb|ABE65596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332189463|gb|AEE27584.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 609
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 164/348 (47%), Gaps = 62/348 (17%)
Query: 28 EVFCNWTSMMGMYNVLGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKD 86
+V C WT+++ ++ YEE + LFY M KG+ PD V AC L+ + GK+
Sbjct: 228 DVIC-WTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKE 286
Query: 87 VYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL 146
++ +I T+G+ + +V +SL+D Y KC +
Sbjct: 287 IHGKLI--------------------------TNGI----GSNVVVESSLLDMYGKCGSV 316
Query: 147 KVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
+ + F+ + +K+ VSW+A+L GY G E+ + EME + + VL
Sbjct: 317 REARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIFREME------EKDLYCFGTVLK 370
Query: 207 ACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVV 255
ACA + V+LGK IHG +R I L G + + V++++S R+++
Sbjct: 371 ACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDSASRVYSKMSIRNMIT 430
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC------------LKLAA 303
WN+++SA ++G+ +A+ D++ +KP+ ++ +++L AC L A
Sbjct: 431 WNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISFIAILTACGHTGMVDEGRNYFVLMA 490
Query: 304 LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMI 350
G+ G+ ++ +ID+ GR G +++ + +N S W V++
Sbjct: 491 KSYGIKPGTEHYSCMIDLLGRAGLFEEAENLLERAECRNDASLWGVLL 538
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/393 (24%), Positives = 175/393 (44%), Gaps = 79/393 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF----------------------CNWTSMMGMYN 41
GIQ HAH++ G+E +G+ LL ++ +WTSMM Y
Sbjct: 80 GIQFHAHVVKSGLETDRNVGNSLLSLYFKLGPGMRETRRVFDGRFVKDAISWTSMMSGYV 139
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+ + + +F M+ G+ + F KACSEL + R+G+ + +I+ FE N
Sbjct: 140 TGKEHVKALEVFVEMVSFGLDANEFTLSSAVKACSELGEVRLGRCFHGVVITHGFEWNHF 199
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ L L+ VN +D + F ++ + D+
Sbjct: 200 ISSTLAYLYG--------------------VNREPVD----------ARRVFDEMPEPDV 229
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
+ W A+L+ ++ EE L M + + P+ + VL AC ++ +K GK IH
Sbjct: 230 ICWTAVLSAFSKNDLYEEALGLFYAMHRGK-GLVPDGSTFGTVLTACGNLRRLKQGKEIH 288
Query: 222 GYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
G ++ + I + CG V + VFN +S ++ V W++++ + ++G+
Sbjct: 289 GKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHE 348
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGSF----VWNALI 319
A+++ R++ + + +VL AC LAA+ G + G F V +ALI
Sbjct: 349 KAIEIFREM----EEKDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALI 404
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
D+YG+ G I + +++ M +N+++WN M+S
Sbjct: 405 DLYGKSGCIDSASRVYSKMSIRNMITWNAMLSA 437
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 131/252 (51%), Gaps = 26/252 (10%)
Query: 126 MDQDFLVNNSLIDFYAKC-RYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLL 184
++ D V NSL+ Y K ++ + F KD +SW +M++GY G +E V L
Sbjct: 92 LETDRNVGNSLLSLYFKLGPGMRETRRVFDGRFVKDAISWTSMMSGYVTG--KEHVKALE 149
Query: 185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH----LSTACGFV-- 238
+EM+ + N +LS + AC+++ V+LG+ HG V+ H +S+ ++
Sbjct: 150 VFVEMVSFGLDANEFTLSSAVKACSELGEVRLGRCFHGVVITHGFEWNHFISSTLAYLYG 209
Query: 239 -----ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIV 292
+ + VF+++ DV+ W +++SAF ++ +AL L + + P+ T
Sbjct: 210 VNREPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFG 269
Query: 293 SVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK 341
+VL AC L L QG +G+ V ++L+DMYG+CG+++++R++F M K
Sbjct: 270 TVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKK 329
Query: 342 NLVSWNVMISVY 353
N VSW+ ++ Y
Sbjct: 330 NSVSWSALLGGY 341
>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 701
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/340 (26%), Positives = 156/340 (45%), Gaps = 38/340 (11%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W+S++ Y + F M V P+ V P + KA + LK +++ ++ +
Sbjct: 78 WSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACTV 137
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ + + + L++ + K +F + + S ID K
Sbjct: 138 RLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGE------SGIDCVKKV--------- 182
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + +D+VSWN ++AG+A G E +++ EM ++P++ +LS +L A+
Sbjct: 183 FDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGK-NGKLKPDSFTLSSILPIFAEHV 241
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
V GK IHGY +R+ I + C + CS F L +D + WNSII+
Sbjct: 242 DVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIA 301
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGT 310
V++G+ L R ++ NVKP V+ SV+PAC L AL G
Sbjct: 302 GCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDD 361
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
F+ ++L+DMY +CG I+ +R +F + +++V+W +I
Sbjct: 362 NEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAII 401
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/332 (24%), Positives = 146/332 (43%), Gaps = 72/332 (21%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W +++ + G Y E +++ M G ++PD F + +E D GK+++ Y
Sbjct: 193 SWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGY 252
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ F+G D + +SLID YAKC L+ S
Sbjct: 253 AVRNGFDG------------------------------DVFIGSSLIDMYAKCNRLECSL 282
Query: 151 CKFSKIKQKDLVSWNAMLAG--------YALGGFREEVTNLLDEMEMIQTDMQPNTISLS 202
F + +KD +SWN+++AG LG FR M++ +++P +S S
Sbjct: 283 RAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRR----------MLKENVKPMAVSFS 332
Query: 203 GVLAACAQVKGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTR 251
V+ ACA + + LG+ +HG ++R + + CG + + VF+++ R
Sbjct: 333 SVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKR 392
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ----- 306
D+V W +II G +DA+ L +++ V+P V ++VL AC + +
Sbjct: 393 DMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYF 452
Query: 307 -------GLGTGSFVWNALIDMYGRCGAIQKS 331
G+ G + A+ D+ GR G ++++
Sbjct: 453 NSMERDFGIAPGLEHYAAVADLLGRAGRLEEA 484
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 72/124 (58%), Gaps = 12/124 (9%)
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV-IVANVKPNTVTIVSVLPAC 298
C VF+ + RDVV WN++I+ F ++G V+ALD++R++ +KP++ T+ S+LP
Sbjct: 178 CVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIF 237
Query: 299 LKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
+ A+ G F+ ++LIDMY +C ++ S + F ++P K+ +SWN
Sbjct: 238 AEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWN 297
Query: 348 VMIS 351
+I+
Sbjct: 298 SIIA 301
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 101/235 (42%), Gaps = 53/235 (22%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF--CN-------------------WTSMMGMYNV 42
G ++H + + G + F+GS L++++ CN W S++
Sbjct: 246 GKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQ 305
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G ++ + F M+ + V+P V AC+ L +G+ ++ ++ + F+ N +
Sbjct: 306 NGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFI 365
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L+D++ KCG +++ RY+ F +I ++D+V
Sbjct: 366 ASSLVDMYAKCGNIKM------------------------ARYV------FDRIDKRDMV 395
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+W A++ G A+ G + +L + M++ ++P ++ VL AC+ V G
Sbjct: 396 AWTAIIMGCAMHGHALDAVSLFE--NMLEDGVRPCYVAFMAVLTACSHAGLVDEG 448
>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Cucumis sativus]
Length = 990
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 108/387 (27%), Positives = 175/387 (45%), Gaps = 53/387 (13%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMID-- 58
+ LG VH + G+ + F+G+ +M+ +Y G+ +E V LF M +
Sbjct: 226 IHLGKSVHGMAVKMGLIMDLFVGN----------AMIALYGKCGFLDEAVELFDKMPEQN 275
Query: 59 --------KGVRPDHFVCPKVYKACSELKDYRVG--KDVYDYMISIKFEGNACVKRPLLD 108
+G + F + Y+A L + G DV + + C +D
Sbjct: 276 LISWNSLIRGFSENGFWL-EAYRAFRSLLESGDGLIPDVATMVTLLP----VCSGEGNVD 330
Query: 109 LFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAML 168
+ + M + GL E+ +V N+LID Y+KC L + F KI+ K +VSWN+M+
Sbjct: 331 VGMVIHGMAVKLGLVHEL----MVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMI 386
Query: 169 AGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH 228
Y+ GF E +LL +M M + M+ N +++ +L AC + + +A+HGY LRH
Sbjct: 387 GAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHS 446
Query: 229 IHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLR 277
CG ++ + VF ++T+ V WN++I ++G + ALD
Sbjct: 447 FQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYF 506
Query: 278 DVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCG 326
++ + P+ +IVS+L AC +L L GL SFV +L+ +Y C
Sbjct: 507 EMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCS 566
Query: 327 AIQKSRKIFVLMPHKNLVSWNVMISVY 353
R F M KN V WN M+S Y
Sbjct: 567 KPFYGRTYFERMGDKNSVCWNAMLSGY 593
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 158/343 (46%), Gaps = 55/343 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +++ Y Y+E ++ F +I +PD+F P + KAC+ D +GK V+
Sbjct: 177 WNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMA 236
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + ++DLF V N++I Y KC +L +
Sbjct: 237 VKMGL---------IMDLF---------------------VGNAMIALYGKCGFLDEAVE 266
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K+ +++L+SWN+++ G++ GF E + + P+ ++ +L C+
Sbjct: 267 LFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGE 326
Query: 212 KGVKLGKAIHGYVLR----HH-------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
V +G IHG ++ H I + + CG + + +F ++ + VV WNS+I
Sbjct: 327 GNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMI 386
Query: 261 SAFVRSGQVVDALDLLRDVIVAN--VKPNTVTIVSVLPACLKLA-----------ALPQG 307
A+ R G V + DLLR + + ++ N VTI+++LPACL+ + +L
Sbjct: 387 GAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHS 446
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ NA I Y +CG++ + +F M K++ SWN +I
Sbjct: 447 FQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVI 489
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 132/246 (53%), Gaps = 24/246 (9%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
L+NN+ I YAKC L + F + K + SWNA++ G+A G + + L EM
Sbjct: 452 LINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNG--DPIKALDFYFEMT 509
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICS----CS--- 243
+ + P+ S+ +L AC ++ ++ GK IHG+VLR+ + +++ + S CS
Sbjct: 510 RLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPF 569
Query: 244 ----VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
F ++ ++ V WN+++S + ++ +AL L R ++ ++P+ + I S+L AC
Sbjct: 570 YGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACS 629
Query: 300 KLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
+L+AL G L +FV +L+DMY + G + S++IF + K + SWNV
Sbjct: 630 QLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNV 689
Query: 349 MISVYG 354
MI+ +G
Sbjct: 690 MITGFG 695
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 139/279 (49%), Gaps = 36/279 (12%)
Query: 109 LFIKCGR---MEITSGLFE------EMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
L KCG+ +EI L E + DF++N LI Y+ C Y S F ++ K
Sbjct: 113 LLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNK 172
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ-TDMQPNTISLSGVLAACAQVKGVKLGK 218
+L WNA+++GY +E + +E+I T+ QP+ + ++ AC + LGK
Sbjct: 173 NLFQWNALVSGYVRNELYDEAIHTF--LELISVTEFQPDNFTFPCLIKACTGKCDIHLGK 230
Query: 219 AIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
++HG +V I L CGF+ + +F+++ ++++ WNS+I F +G
Sbjct: 231 SVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENG 290
Query: 268 QVVDALDLLRDVIVA--NVKPNTVTIVSVLPAC-----------LKLAALPQGLGTGSFV 314
++A R ++ + + P+ T+V++LP C + A+ GL V
Sbjct: 291 FWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMV 350
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
NALIDMY +CG + ++ +F + +K++VSWN MI Y
Sbjct: 351 CNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAY 389
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 151/333 (45%), Gaps = 55/333 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++G + G + ++ ++ M G+ PD F + AC L + GK+++ ++
Sbjct: 484 SWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFV 543
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ E N+ V LL L+ C + FY +
Sbjct: 544 LRNGLEMNSFVAVSLLSLYFHCSK----------------------PFYGRTY------- 574
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ K+ V WNAML+GY+ E +L +M+ ++P+ I+++ +L AC+Q+
Sbjct: 575 -FERMGDKNSVCWNAMLSGYSQNELPNEALSLF--RQMLSDGLEPDEIAIASILGACSQL 631
Query: 212 KGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ LGK +H + L++ + + GF+ S +FN+L+ ++V WN +I
Sbjct: 632 SALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMI 691
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
+ F GQ A++L D+ ++ +P+ T + VL AC + +GL + +
Sbjct: 692 TGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKL 751
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMPHK 341
+ +IDM GR G + ++ MP +
Sbjct: 752 EPELEHYACVIDMLGRAGRLNEALNFINEMPEE 784
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 104/239 (43%), Gaps = 55/239 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
++ G ++H ++ G+E+ +F+ LL ++ + W +M+
Sbjct: 533 LQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSG 592
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y+ E ++LF M+ G+ PD + ACS+L +GK+V+ + +
Sbjct: 593 YSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFAL------- 645
Query: 100 ACVKRPLL-DLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
K L+ D F+ C SL+D YAK +L S F+++
Sbjct: 646 ---KNSLMEDNFVAC---------------------SLMDMYAKSGFLGHSQRIFNRLNG 681
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
K++ SWN M+ G+ + G + L ++M+ ++D QP+ + GVL AC V G
Sbjct: 682 KEVASWNVMITGFGVHGQGNKAVELFEDMK--RSDKQPDRFTFLGVLQACCHAGLVSEG 738
>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 805
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 165/343 (48%), Gaps = 55/343 (16%)
Query: 29 VFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY 88
+ CN +M+ Y G Y E + LF LM + + D C KAC+ DY +G ++
Sbjct: 96 LLCN--AMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEI- 152
Query: 89 DYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKV 148
I+S + + M+++ V +S+I F K +
Sbjct: 153 -----------------------------ISSAVEKGMEKNRFVGSSMISFLVKFGKIGE 183
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
+ F + KD+V WN+++ GY G + L EM + ++P+ I+++ ++ AC
Sbjct: 184 AQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLF--FEMHGSGIKPSPITMTSLIQAC 241
Query: 209 AQVKGVKLGKAIHGY-----------VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWN 257
+ +KLGK +HGY VL + + + G + + VF ++ TR++V WN
Sbjct: 242 GGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWN 301
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----QGLGTGS 312
++IS VR+G V ++ DL ++ ++ + TIVS+L C + A+L G S
Sbjct: 302 AMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIRS 361
Query: 313 FVWN-----ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
F N A++D+Y +CG+++++ +F M +N+++W M+
Sbjct: 362 FESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAML 404
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 99/397 (24%), Positives = 181/397 (45%), Gaps = 77/397 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLL----------------------EVFCNWTSMMGM 39
E+G+++ + + G+E F+GS ++ +V C W S++G
Sbjct: 147 EMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVC-WNSIIGG 205
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G ++ LF+ M G++P + +AC + + ++GK ++ Y++ +
Sbjct: 206 YVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLG---- 261
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ D LV S +D Y+K ++ + F K+ +
Sbjct: 262 --------------------------LGNDILVLTSFVDMYSKMGDIESARWVFYKMPTR 295
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+LVSWNAM++G G E +L + +++ + ++ +L C+Q + GK
Sbjct: 296 NLVSWNAMISGCVRNGLVGESFDLFHRL--VRSSGGFDLTTIVSLLQGCSQTASLATGKI 353
Query: 220 IHGYVLRH---HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
+HG +R ++ LSTA CG + + VFN++ R+V+ W +++ ++G
Sbjct: 354 LHGCAIRSFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHA 413
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LGTGSFVWN--AL 318
DAL L + + N+VT VS++ +C L +L +G LG + N AL
Sbjct: 414 EDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTAL 473
Query: 319 IDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISVYG 354
+DMY +CG I + +IF K++V WN MI+ YG
Sbjct: 474 VDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYG 510
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/313 (27%), Positives = 142/313 (45%), Gaps = 35/313 (11%)
Query: 63 PDHFVCPKVYKACSELKDYRVGK--DVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITS 120
P HF+ K + C+ LKD + + + +S+ E + + +++K +I +
Sbjct: 4 PFHFIANKPFSTCNPLKDGQFNQLPTIIHNFLSLLRESSKNL------IWVKSTHAQIIT 57
Query: 121 GLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEV 180
+ D V L+ Y+ R L+ + F + Q + NAML GY G E
Sbjct: 58 ---NSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQSGRYRET 114
Query: 181 TNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI-----------HGYVLRHHI 229
L M +++ ++ S + L ACA ++G I + +V I
Sbjct: 115 LELFGLMR--SRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMI 172
Query: 230 HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289
G + + VF+ + +DVV WNSII +V++G A L ++ + +KP+ +
Sbjct: 173 SFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPI 232
Query: 290 TIVSVLPAC-----LKLAA------LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLM 338
T+ S++ AC LKL L GLG V + +DMY + G I+ +R +F M
Sbjct: 233 TMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKM 292
Query: 339 PHKNLVSWNVMIS 351
P +NLVSWN MIS
Sbjct: 293 PTRNLVSWNAMIS 305
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 122/240 (50%), Gaps = 26/240 (10%)
Query: 124 EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNL 183
+ + +++ +++D Y+KC LK + F+++K +++++W AML G A G E+ L
Sbjct: 360 RSFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRL 419
Query: 184 LDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-----------HHIHLS 232
+M+ + + N+++ ++ +CA + +K G++IHG++ R + +
Sbjct: 420 FAQMQ--EEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMY 477
Query: 233 TACGFVICSCSVFNQLS-TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI 291
CG + + +F+ S ++DVV+WNS+I+ + G A+ + +I +KPN T
Sbjct: 478 AKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTF 537
Query: 292 VSVLPACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFVLMP 339
+S+L AC + QG+ + + + L+D+ R G ++++ + MP
Sbjct: 538 LSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKMP 597
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY---- 88
W SM+ Y + G+ + V +++ MI++G++P+ + ACS + G ++
Sbjct: 502 WNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSME 561
Query: 89 -DYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126
D+ I + AC L+DL + GR E L E+M
Sbjct: 562 RDHNIRPIEKHYAC----LVDLLSRAGRFEEAQALIEKM 596
>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
Length = 667
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 95/372 (25%), Positives = 177/372 (47%), Gaps = 80/372 (21%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDV--YDY 90
W M+ Y +G ++E + LF +M++KG+ K ++ SEL D +DV ++
Sbjct: 30 WNFMVSEYAKIGDFKESICLFKIMVEKGIEG------KRSESASELFDKLCDRDVISWNS 83
Query: 91 MISIKFEGNACVKRPL------------------LDLFIKCGRMEITS--------GLFE 124
MIS + N +R L + + + C + S +
Sbjct: 84 MIS-GYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAKSGTLSLGKAVHSLAIKS 142
Query: 125 EMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLL 184
++ +N+L+D Y+KC L + F K+ ++++VSW +M+AGY G+ + LL
Sbjct: 143 SFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILL 202
Query: 185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI-----------HLST 233
+ME + ++ + ++++ +L ACA+ + GK +H Y+ +++ +
Sbjct: 203 QQME--KEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYA 260
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
CG + + SVF+ + +D++ WN++ V +KP++ T+
Sbjct: 261 KCGSMEGANSVFSTMVVKDIISWNTM---------------------VGELKPDSRTMAC 299
Query: 294 VLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
+LPAC L+AL +G + V NAL+D+Y +CG + +R +F ++P K+
Sbjct: 300 ILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKD 359
Query: 343 LVSWNVMISVYG 354
LVSW VMI+ YG
Sbjct: 360 LVSWTVMIAGYG 371
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 144/331 (43%), Gaps = 76/331 (22%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ Y G+ + + L M +GV+ D + AC+ GKDV+DY
Sbjct: 181 SWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDY- 239
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
IK M S LF V N+L+D YAKC ++ ++
Sbjct: 240 -------------------IKANNM--ASNLF--------VCNALMDMYAKCGSMEGANS 270
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS + KD++SWN M+ +++P++ +++ +L ACA +
Sbjct: 271 VFSTMVVKDIISWNTMVG-----------------------ELKPDSRTMACILPACASL 307
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ GK IHGY+LR+ + L CG + + +F+ + ++D+V W +I
Sbjct: 308 SALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMI 367
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN---- 316
+ + G +A+ ++ A ++P+ V+ +S+L AC L QG + N
Sbjct: 368 AGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNI 427
Query: 317 --------ALIDMYGRCGAIQKSRKIFVLMP 339
++D+ R G + K+ K +P
Sbjct: 428 EPKLEHYACMVDLLSRTGNLSKAYKFIETLP 458
Score = 38.1 bits (87), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L+ Y CG +++ R++F M KN+ WN M+S Y
Sbjct: 2 LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYA 38
>gi|115466810|ref|NP_001057004.1| Os06g0185700 [Oryza sativa Japonica Group]
gi|55773755|dbj|BAD72438.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113595044|dbj|BAF18918.1| Os06g0185700 [Oryza sativa Japonica Group]
gi|125596287|gb|EAZ36067.1| hypothetical protein OsJ_20377 [Oryza sativa Japonica Group]
Length = 673
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 136/247 (55%), Gaps = 24/247 (9%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D V NSL+D YAK L+ + F ++ ++++VSW +ML+G G EE L +EM
Sbjct: 156 DGFVMNSLVDMYAKAGDLENARKVFDRVPERNVVSWTSMLSGSIQNGIAEEGLVLFNEMR 215
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-----------ACGF 237
Q ++ P+ ++ VLAACA + G+ G+ IHG V+++ + ++ C
Sbjct: 216 --QDNVHPSEYTMVSVLAACAMLGGLHQGRWIHGSVIKYGLSTNSFISASLLDMYAKCEK 273
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
V + VF++L D+V+W ++I + ++ + +DAL L ++ PN+VTI +V+ A
Sbjct: 274 VEDARRVFDELEFVDIVLWTAMIVGYTQNKRPLDALQLFLHKKFVSIVPNSVTIATVISA 333
Query: 298 CLKLAALPQG---------LGT--GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
+L LP G LGT V NAL+DMY +C A+ ++ IF + K++V+W
Sbjct: 334 SAQLRHLPLGRSVHAIGVKLGTMESDVVRNALVDMYAKCQALPEANSIFGRILIKDVVAW 393
Query: 347 NVMISVY 353
N M++ Y
Sbjct: 394 NSMMAGY 400
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/345 (23%), Positives = 160/345 (46%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ G EE + LF M V P + V AC+ L G+ ++ +
Sbjct: 190 SWTSMLSGSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVLAACAMLGGLHQGRWIHGSV 249
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I N+ ++ SL+D YAKC ++ +
Sbjct: 250 IKYGLSTNS------------------------------FISASLLDMYAKCEKVEDARR 279
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +++ D+V W AM+ GY + L + + + PN+++++ V++A AQ+
Sbjct: 280 VFDELEFVDIVLWTAMIVGYTQNKRPLDALQLFLHKKFVS--IVPNSVTIATVISASAQL 337
Query: 212 KGVKLGKAIHGY----------VLRHH-IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ + LG+++H V+R+ + + C + + S+F ++ +DVV WNS++
Sbjct: 338 RHLPLGRSVHAIGVKLGTMESDVVRNALVDMYAKCQALPEANSIFGRILIKDVVAWNSMM 397
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG----------- 309
+ + +G ++L L + + + P+ +++V+ L AC+ LA L G G
Sbjct: 398 AGYSENGMANESLVLFNRMRMQGISPDAISVVNALSACVCLADLHIGKGFHTYAIKYAFM 457
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ +V AL+++Y +C + ++++F M +N V+W+ MI YG
Sbjct: 458 SNIYVNTALLNLYSKCADLPSAQRVFNDMTDRNSVTWSAMIGGYG 502
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 88/386 (22%), Positives = 166/386 (43%), Gaps = 76/386 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G +H +I G+ +F+ + LL+++ WT+M+ Y
Sbjct: 242 GRWIHGSVIKYGLSTNSFISASLLDMYAKCEKVEDARRVFDELEFVDIVLWTAMIVGYTQ 301
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+ + LF + P+ V A ++L+ +G+ V+
Sbjct: 302 NKRPLDALQLFLHKKFVSIVPNSVTIATVISASAQLRHLPLGRSVHA------------- 348
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+ +K G ME +V N+L+D YAKC+ L ++ F +I KD+V
Sbjct: 349 ------IGVKLGTMESD-----------VVRNALVDMYAKCQALPEANSIFGRILIKDVV 391
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+WN+M+AGY+ G E L + M M + P+ IS+ L+AC + + +GK H
Sbjct: 392 AWNSMMAGYSENGMANESLVLFNRMRM--QGISPDAISVVNALSACVCLADLHIGKGFHT 449
Query: 223 YVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
Y +++ +I+++TA C + + VFN ++ R+ V W+++I + G
Sbjct: 450 YAIKYAFMSNIYVNTALLNLYSKCADLPSAQRVFNDMTDRNSVTWSAMIGGYGMQGDSAG 509
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNALI 319
++DL +++ N+ PN V S+L AC + G + + ++
Sbjct: 510 SIDLFNEMLKENIHPNEVVFTSILSACSHTGMVTAGKEYFDSMARHFNITPSMKHYACMV 569
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVS 345
D+ R G ++++ + MP K +S
Sbjct: 570 DVMARAGNLEEALEFIQNMPIKAGIS 595
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 105/239 (43%), Gaps = 21/239 (8%)
Query: 136 LIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ 195
L+ YA L + + D ++ ML G + L +M
Sbjct: 61 LLSCYAALGDLASARGVLDGTPRPDAYAYRVMLGWLVDAGSHADAVALHRDMRRRCPAAA 120
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIH----------GYVLRHHIHLSTACGFVICSCSVF 245
+ LS L AC + + G+ +H G+V+ + + G + + VF
Sbjct: 121 QADVVLSLALKACVRSADFRYGRRLHCDVVKAGGADGFVMNSLVDMYAKAGDLENARKVF 180
Query: 246 NQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP 305
+++ R+VV W S++S +++G + L L ++ NV P+ T+VSVL AC L L
Sbjct: 181 DRVPERNVVSWTSMLSGSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVLAACAMLGGLH 240
Query: 306 Q-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
Q GL T SF+ +L+DMY +C ++ +R++F + ++V W MI Y
Sbjct: 241 QGRWIHGSVIKYGLSTNSFISASLLDMYAKCEKVEDARRVFDELEFVDIVLWTAMIVGY 299
>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 749
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 166/355 (46%), Gaps = 65/355 (18%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT+++ Y + + LF M++ G P ++ V ACS L+ GK V+ Y+I
Sbjct: 127 WTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLI 186
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+D D + NSL FY+K R L+ +
Sbjct: 187 KY------------------------------HIDFDTSIGNSLSSFYSKFRRLEFAIKA 216
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F IK+KD++SW ++++ G + +L M+M+ M+PN +L+ VL+AC +
Sbjct: 217 FKIIKEKDVISWTSVISSCCDNG--QAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVML 274
Query: 213 GVKLGKAIH------GY----VLRHHI-HLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ LG IH GY ++++ I +L CG++I + +F + T ++V WN++I+
Sbjct: 275 TLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIA 334
Query: 262 AFVRSGQVVD-----------ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG--- 307
+ + + AL + + + + +KP+ T SVL C L AL QG
Sbjct: 335 GHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQI 394
Query: 308 ----LGTGSF----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ +G V AL+ MY +CG+I K+ K F+ MP + ++SW MI+ +
Sbjct: 395 HGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFA 449
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 126/246 (51%), Gaps = 24/246 (9%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
+D V L++ Y+KC ++ +H F + ++++ +W +L GY L +
Sbjct: 91 EDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLF--I 148
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICS------ 241
+M++ P+ +L VL AC+ ++ ++ GK +H Y++++HI T+ G + S
Sbjct: 149 KMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFR 208
Query: 242 -----CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296
F + +DV+ W S+IS+ +GQ +L D++ +KPN T+ SVL
Sbjct: 209 RLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLS 268
Query: 297 ACLKLAALPQG---------LGTGS--FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
AC + L G LG GS + N+++ +Y +CG + +++K+F M NLV+
Sbjct: 269 ACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVT 328
Query: 346 WNVMIS 351
WN MI+
Sbjct: 329 WNAMIA 334
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/405 (21%), Positives = 167/405 (41%), Gaps = 84/405 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G QVHA+LI ++ +G+ L + +WTS++
Sbjct: 175 IEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISS 234
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
G ++ F M+ G++P+ + V AC + +G ++ I + +
Sbjct: 235 CCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGY--- 291
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
L+ NS++ Y KC +L + F ++
Sbjct: 292 ---------------------------GSSILIKNSIMYLYLKCGWLIEAQKLFEGMETL 324
Query: 160 DLVSWNAMLAGYA---------LGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+LV+WNAM+AG+A + + T L ++ ++ M+P+ + S VL+ C+
Sbjct: 325 NLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSN 384
Query: 211 VKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ ++ G+ IHG +++ + + CG + + F ++ +R ++ W S+
Sbjct: 385 LVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSM 444
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----- 314
I+ F R G AL L D+ + +KPN VT V VL AC + L +
Sbjct: 445 ITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYN 504
Query: 315 -------WNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMIS 351
+ LIDMY R G ++++ + M + N W+++I+
Sbjct: 505 IKPVMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIA 549
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 77/170 (45%), Gaps = 22/170 (12%)
Query: 204 VLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRD 252
+L C + IHG++++ H + + CG + + VF+ L R+
Sbjct: 64 LLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRN 123
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS 312
V W ++++ +V++ + AL L ++ A P+ T+ VL AC L ++ G +
Sbjct: 124 VNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHA 183
Query: 313 F-----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ + N+L Y + ++ + K F ++ K+++SW +IS
Sbjct: 184 YLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVIS 233
Score = 38.1 bits (87), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G FV L+++Y +CG ++ + K+F +P +N+ +W +++ Y
Sbjct: 88 GFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGY 134
>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 1024
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 161/332 (48%), Gaps = 27/332 (8%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT+M+ Y EE + +F LM+ V P+ V ACS++ + +GK V++ +
Sbjct: 326 WTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVE 385
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + LLD+++KC + LF+ M +D S+++ YAKC L+ +
Sbjct: 386 EKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARR 445
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +K+ V W+AM+AGY+ +E L EM++ + P +L VL+AC Q+
Sbjct: 446 FFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFH--EMMERGVVPIEHTLVSVLSACGQL 503
Query: 212 KGVKLGKAIHGY-----VLRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ LG IH Y ++ + L A CG + + VF+ + R+++ WN++
Sbjct: 504 TCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTM 563
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------G 307
I+ + +G+ A+++ + +PN +T VS+L AC + + G
Sbjct: 564 IAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYG 623
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+ + ++D+ GR G ++++ K+ MP
Sbjct: 624 IKPERGHYACMVDLLGRTGLLEEAYKLIANMP 655
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 134/282 (47%), Gaps = 56/282 (19%)
Query: 127 DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDE 186
D + LV N LI FYA+ LK + F + KD+V+W M+ GYA EE + +
Sbjct: 289 DCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFE- 347
Query: 187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACG------FVIC 240
M+ + ++PN ++L V++AC+ + +++GK +H V ++ S + +V C
Sbjct: 348 -LMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKC 406
Query: 241 SC-----SVFNQLSTRDVVVWNSIISAFVRSGQVVDA----------------------- 272
C +F++++T+DV W S+++ + + G + A
Sbjct: 407 DCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYS 466
Query: 273 --------LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF----------- 313
L L +++ V P T+VSVL AC +L L G +
Sbjct: 467 QNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSV 526
Query: 314 -VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ NA++DMY +CG+I + ++F MP +NL+SWN MI+ Y
Sbjct: 527 TLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYA 568
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 111/231 (48%), Gaps = 24/231 (10%)
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
L +H F++++Q + WN M+ GY R+ + + M Q ++ ++ S L
Sbjct: 207 LHYAHTIFNRVEQPNTFMWNTMIRGYQ--NARKPIFAFSFFVYMFQLRVEMDSRSFVFAL 264
Query: 206 AACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVV 254
AC Q + V G++++ V + IH G + + VF++ S +DVV
Sbjct: 265 KACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVV 324
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV 314
W ++I + +A+++ +++++V+PN VT+++V+ AC + L G V
Sbjct: 325 TWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKV 384
Query: 315 -----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
NAL+DMY +C + +R++F M K++ SW M++ Y
Sbjct: 385 EEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYA 435
>gi|359492699|ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like [Vitis vinifera]
Length = 1545
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 101/427 (23%), Positives = 185/427 (43%), Gaps = 100/427 (23%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMY 40
ELG ++HA + + E+ F+ ++L+ ++ W++M+G Y
Sbjct: 102 ELGRKLHARIGLL-EEMNPFVETKLVSMYAKCGSLGEARKVFGEMRERNLYAWSAMIGAY 160
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+ + E+V F+ M++ G+ PD F+ PK+ +AC D GK ++ +I N
Sbjct: 161 SREQMWREVVQHFFFMMEDGIVPDEFLLPKILQACGNCGDAETGKLIHSLVIRCGMNFNI 220
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V +L ++ KCGR+ FE MD +D + NS+I Y + L+ SH F K++++
Sbjct: 221 RVSNSILAVYAKCGRLSCARRFFENMDYRDRVSWNSIITGYCQKGELEKSHQLFEKMQEE 280
Query: 160 ----DLVSWNAMLAGYALGGFREEVTNLLDEM---------------------------- 187
LV+WN ++ Y+ G ++ L+ +M
Sbjct: 281 GIEPGLVTWNILINSYSQSGKCDDAMELMKKMESFRIVPDVFTWTSMISGFAQNNRRSQA 340
Query: 188 -----EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-----------HHIHL 231
EM+ ++PN ++++ ++ACA +K +K G +H ++ I +
Sbjct: 341 LELFREMLLAGIEPNGVTVTSGISACASLKALKKGMELHSVAVKIGCVEDLLVGNSLIDM 400
Query: 232 STACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI 291
+ G + + VF+ + +DV WNS+I + ++G A DL + ++V PN VT
Sbjct: 401 YSKSGELEDARRVFDMILKKDVYTWNSMIGGYCQAGYCGKAYDLFIKMHESDVPPNVVT- 459
Query: 292 VSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLV-----SW 346
WNA+I Y + G ++ +F M L+ SW
Sbjct: 460 -----------------------WNAMISGYIQNGDEDQAMDLFHRMEKDGLIKRDTASW 496
Query: 347 NVMISVY 353
N +I+ Y
Sbjct: 497 NSLIAGY 503
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/337 (26%), Positives = 154/337 (45%), Gaps = 63/337 (18%)
Query: 28 EVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDV 87
+VF WTSM+ + + + LF M+ G+ P+ AC+ LK + G ++
Sbjct: 320 DVF-TWTSMISGFAQNNRRSQALELFREMLLAGIEPNGVTVTSGISACASLKALKKGMEL 378
Query: 88 YDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147
+ + I CV +D LV NSLID Y+K L+
Sbjct: 379 HSVAVKI-----GCV-------------------------EDLLVGNSLIDMYSKSGELE 408
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
+ F I +KD+ +WN+M+ GY G+ + +L ++M ++D+ PN ++ + +++
Sbjct: 409 DARRVFDMILKKDVYTWNSMIGGYCQAGYCGKAYDLF--IKMHESDVPPNVVTWNAMISG 466
Query: 208 CAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
Q G L H + + L RD WNS+I+ ++++G
Sbjct: 467 YIQN-----GDEDQAMDLFHRMEK--------------DGLIKRDTASWNSLIAGYLQNG 507
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLGTGSFVWN 316
AL + R + ++PN+VT++S+LPAC L A L + LG+ V N
Sbjct: 508 HKNKALGIFRQMQSFCIRPNSVTMLSILPACANLVAAKKVKEIHGCILRRNLGSELSVAN 567
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
LID Y + G I ++ IF + K+++SWN +I+ Y
Sbjct: 568 CLIDTYAKSGNIVYAQTIFQGISSKDIISWNSLIAGY 604
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 84/191 (43%), Gaps = 23/191 (12%)
Query: 184 LDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG----------YVLRHHIHLST 233
LD + ++++PNT +L +C +LG+ +H +V + +
Sbjct: 73 LDAIAQGGSNVKPNTYMQ--LLQSCIDQGSAELGRKLHARIGLLEEMNPFVETKLVSMYA 130
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
CG + + VF ++ R++ W+++I A+ R + + ++ + P+ +
Sbjct: 131 KCGSLGEARKVFGEMRERNLYAWSAMIGAYSREQMWREVVQHFFFMMEDGIVPDEFLLPK 190
Query: 294 VLPACLKLAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKN 342
+L AC G S V N+++ +Y +CG + +R+ F M +++
Sbjct: 191 ILQACGNCGDAETGKLIHSLVIRCGMNFNIRVSNSILAVYAKCGRLSCARRFFENMDYRD 250
Query: 343 LVSWNVMISVY 353
VSWN +I+ Y
Sbjct: 251 RVSWNSIITGY 261
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 37/188 (19%)
Query: 31 CNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W S++ Y G+ + + +F M +RP+ + AC+ L + K+++
Sbjct: 494 ASWNSLIAGYLQNGHKNKALGIFRQMQSFCIRPNSVTMLSILPACANLVAAKKVKEIH-- 551
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
C+ R + + V N LID YAK + +
Sbjct: 552 ---------GCILR-------------------RNLGSELSVANCLIDTYAKSGNIVYAQ 583
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT-------ISLSG 203
F I KD++SWN+++AGY L G + +L D+M + T SLSG
Sbjct: 584 TIFQGISSKDIISWNSLIAGYVLHGCSDSALDLFDQMTKMGVKPSRGTFLSIIYAFSLSG 643
Query: 204 VLAACAQV 211
++ QV
Sbjct: 644 MVDKGKQV 651
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 16/112 (14%)
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIV---ANVKPNTVTIVSVLPACLKLAALPQGLG-- 309
V ++ ++ ++G++ DA+ L D I +NVKPNT + +L +C+ + G
Sbjct: 52 VTDAHLNHLCKNGRLADAIACL-DAIAQGGSNVKPNTY--MQLLQSCIDQGSAELGRKLH 108
Query: 310 --------TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
FV L+ MY +CG++ ++RK+F M +NL +W+ MI Y
Sbjct: 109 ARIGLLEEMNPFVETKLVSMYAKCGSLGEARKVFGEMRERNLYAWSAMIGAY 160
>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
Length = 693
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 102/341 (29%), Positives = 159/341 (46%), Gaps = 62/341 (18%)
Query: 40 YNVL-------GYYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
YNVL G+ E+ ++LF M+D V PD K+CS + VG+ + Y
Sbjct: 86 YNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAY- 144
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
VKR L+ D V +SLI YA CR + +
Sbjct: 145 ---------AVKRGLM--------------------ADRFVLSSLIHMYASCRDVAAAQL 175
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +++ +V WNA++ Y G EV + M ++ + + I+L V+ AC ++
Sbjct: 176 LFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGM--LEVGVAFDEITLVSVVTACGRI 233
Query: 212 KGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
KLGK + YV L + +L TA CG + + +F+ + +RDVV W+++I
Sbjct: 234 GDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMI 293
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW----- 315
S + ++ Q +AL L ++ +A V+PN VT+VSVL AC L AL G S++
Sbjct: 294 SGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLS 353
Query: 316 ------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
AL+D Y +CG I + + F MP KN +W +I
Sbjct: 354 LTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALI 394
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/343 (23%), Positives = 152/343 (44%), Gaps = 56/343 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +++ Y G + E+V +F M++ GV D V AC + D ++GK V +Y+
Sbjct: 188 WNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVD 247
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
N + L+D++ KCG + K R L
Sbjct: 248 EKGLVRNRNLMTALIDMYAKCGEL------------------------GKARRL------ 277
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ +D+V+W+AM++GY E L EM++ +++PN +++ VL+ACA +
Sbjct: 278 FDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQL--AEVEPNDVTMVSVLSACAVLG 335
Query: 213 GVKLGKAIHGYVLRHHIHLSTACG------FVICSC-----SVFNQLSTRDVVVWNSIIS 261
++ GK +H Y+ R + L+ G + C C F + ++ W ++I
Sbjct: 336 ALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIK 395
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GLG 309
+G+ +AL+L + A+++P VT + VL AC + + G+
Sbjct: 396 GMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIK 455
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMIS 351
+ + ++D+ GR G I ++ + MP N V W ++S
Sbjct: 456 PRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLS 498
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 111/212 (52%), Gaps = 23/212 (10%)
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
+N ++ G E+ +L EM + + + P+ +++ L +C+++ + +G+ I Y
Sbjct: 86 YNVLMRALLHAGHPEDALHLFVEMLDVAS-VCPDQHTVACALKSCSRMCTLDVGRGIQAY 144
Query: 224 -----------VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
VL IH+ +C V + +F+ + VV+WN+II+A++++G ++
Sbjct: 145 AVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEV 204
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNALIDM 321
+++ + ++ V + +T+VSV+ AC ++ G +V ALIDM
Sbjct: 205 VEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDM 264
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
Y +CG + K+R++F M +++V+W+ MIS Y
Sbjct: 265 YAKCGELGKARRLFDGMQSRDVVAWSAMISGY 296
>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
Length = 596
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 94/379 (24%), Positives = 172/379 (45%), Gaps = 75/379 (19%)
Query: 5 IQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNVL 43
Q HAH++ G++ F+ + L+ + + WT+M+ +
Sbjct: 123 FQFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRN 182
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G E + F M GV + V KA +++D R G+ V+
Sbjct: 183 GSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHG-------------- 228
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
L+++ GR++ D + +SL+D Y KC + F ++ +++V+
Sbjct: 229 -----LYLETGRVKC----------DVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVT 273
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
W A++AGY R +L EM+++D+ PN +LS VL+ACA V + G+ +H Y
Sbjct: 274 WTALIAGYVQS--RCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCY 331
Query: 224 VLRHHIHLSTACG------FVICSCS-----VFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
++++ I ++T G +V C C VF +L ++V W ++I+ F G DA
Sbjct: 332 MIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDA 391
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-----TGSFV-------WNALID 320
DL ++ ++V PN VT ++VL AC + +G G F + ++D
Sbjct: 392 FDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMELKADHYACMVD 451
Query: 321 MYGRCGAIQKSRKIFVLMP 339
++GR G +++++ + MP
Sbjct: 452 LFGRKGLLEEAKALIERMP 470
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 126/252 (50%), Gaps = 25/252 (9%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
+D D V NSLI Y+ + F + KD+V+W AM+ G+ G E ++
Sbjct: 134 LDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEA--MVY 191
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH-------HIHLSTACGFV 238
+EM +T + N +++ VL A +V+ V+ G+++HG L I S +
Sbjct: 192 FVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYG 251
Query: 239 ICSC-----SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
CSC VF+++ +R+VV W ++I+ +V+S + + +++ ++V PN T+ S
Sbjct: 252 KCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSS 311
Query: 294 VLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
VL AC + AL +G + + LID+Y +CG ++++ +F + KN
Sbjct: 312 VLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKN 371
Query: 343 LVSWNVMISVYG 354
+ +W MI+ +
Sbjct: 372 VYTWTAMINGFA 383
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 99/212 (46%), Gaps = 22/212 (10%)
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG---------- 213
W++++ ++ G + L M + + P+ + +L A +++
Sbjct: 70 WDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRDSNPFQFHAHI 129
Query: 214 VKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
VK G +V I ++ G + +F+ +DVV W ++I FVR+G +A+
Sbjct: 130 VKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAM 189
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGS-----FVWNALIDM 321
++ V N +T+VSVL A K+ + G L TG F+ ++L+DM
Sbjct: 190 VYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDM 249
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
YG+C ++K+F MP +N+V+W +I+ Y
Sbjct: 250 YGKCSCYDDAQKVFDEMPSRNVVTWTALIAGY 281
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 160/318 (50%), Gaps = 30/318 (9%)
Query: 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL 107
E + L++ M+ G++PDH P V KAC+E G V+ +++ FE ++ + L+
Sbjct: 149 EALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLI 208
Query: 108 DLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCK--FSKIKQKDLVSW 164
L+ + LF +D + N++ID Y K ++++ H + F ++ +D++SW
Sbjct: 209 HLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVK--HVEMGHARMVFDRMVCRDVISW 266
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
N M+ GYA+ G E L D+M + ++P ++ +L+ACA + + G +H Y+
Sbjct: 267 NTMINGYAICGKPNEALALFDQMRAV--GVKPTEATVVSLLSACAHLGALDKGLHLHTYI 324
Query: 225 LRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
+ I +++ CG + + VFN + ++DV+ WN+II+ G V +A
Sbjct: 325 NDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQ 384
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------LGTGSFV--WNALIDM 321
L +++ A V+PN +T V++L AC + +G G V + +ID+
Sbjct: 385 QLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDL 444
Query: 322 YGRCGAIQKSRKIFVLMP 339
R G ++++ ++ MP
Sbjct: 445 LARAGFLEEAMELIGTMP 462
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 32/189 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y + G E + LF M GV+P + AC+ L G ++ Y+
Sbjct: 265 SWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYI 324
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ E N+ V L+D++ KCG++ + + +F M+
Sbjct: 325 NDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAME------------------------ 360
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
KD+++WN ++AG A+ G +E L EM+ + ++PN I+ +L+AC+
Sbjct: 361 ------SKDVLAWNTIIAGMAIHGNVKEAQQLFKEMK--EAGVEPNDITFVAILSACSHA 412
Query: 212 KGVKLGKAI 220
V G+ +
Sbjct: 413 GMVDEGQKL 421
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 80/180 (44%), Gaps = 23/180 (12%)
Query: 197 NTISLSGVLAACAQVKGVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSV 244
N S +L+ K ++ K +H ++ HH LS F+ + ++
Sbjct: 63 NPPSNPQILSLFNPCKTLRHLKQVHAQIITHHNSPFQLSALASLSALSPFPTFLAYAKTI 122
Query: 245 FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC------ 298
F+ L ++NS+I A S ++AL L ++ + +KP+ +T V+ AC
Sbjct: 123 FHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVT 182
Query: 299 -----LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ + G S++ ++LI +Y + ++++F L +++VSWN MI Y
Sbjct: 183 WFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGY 242
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 159/345 (46%), Gaps = 44/345 (12%)
Query: 48 EIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPL 106
E + LF M+ D V+P+ F P V KAC+ R GK ++ ++ F + V L
Sbjct: 104 EALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNL 163
Query: 107 LDLFIKCGRMEITSGLF-----------------EEMDQDFLVNNSLIDFYAKCRYLKVS 149
+ +++ C ME LF + D + ++ N +ID + +K +
Sbjct: 164 VRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSA 223
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F ++ + +VSWN M++GYA G E NL EM+ +++ PN ++L VL A A
Sbjct: 224 KNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQ--SSNIDPNYVTLVSVLPAIA 281
Query: 210 QVKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNS 258
++ ++LGK IH Y ++ + + + CG + + VF L R+ + W++
Sbjct: 282 RIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSA 341
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV---- 314
II AF G+ DA+ + A V PN V + +L AC + +G S +
Sbjct: 342 IIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVV 401
Query: 315 --------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ ++D+ GR G ++++ ++ MP + V W ++
Sbjct: 402 GLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALL 446
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 79/130 (60%), Gaps = 11/130 (8%)
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
G + + ++F+++ R VV WN +IS + ++G ++A++L +++ +N+ PN VT+VSVL
Sbjct: 218 GDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVL 277
Query: 296 PACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLV 344
PA ++ AL G + + +AL+DMY +CG+I K+ ++F +P +N +
Sbjct: 278 PAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAI 337
Query: 345 SWNVMISVYG 354
+W+ +I +
Sbjct: 338 TWSAIIGAFA 347
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 104/256 (40%), Gaps = 50/256 (19%)
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYA-KCRYLKVSHCKFSKIKQKDLV 162
+ L +FIK G++ QD L +I F A R + + F ++ + +
Sbjct: 36 KQLHAIFIKTGQI-----------QDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCF 84
Query: 163 SWNAMLAGYALGG---FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
WN +L A + E L M + ++PN + VL ACA+ ++ GK
Sbjct: 85 CWNTILRILAETNDEHLQSEALMLFSAM-LCDGRVKPNRFTFPSVLKACARASRLREGKQ 143
Query: 220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
IHG +++ H D V ++++ +V + DA L
Sbjct: 144 IHGLIVKFGFH--------------------EDEFVISNLVRMYVMCAVMEDAYSLF--- 180
Query: 280 IVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-WNALIDMYGRCGAIQKSRKIFVLM 338
+V +C L + G+ V WN +ID R G I+ ++ +F M
Sbjct: 181 --------CKNVVDFDGSCQ--MELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEM 230
Query: 339 PHKNLVSWNVMISVYG 354
P +++VSWNVMIS Y
Sbjct: 231 PPRSVVSWNVMISGYA 246
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/290 (19%), Positives = 123/290 (42%), Gaps = 58/290 (20%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W M+ Y G++ E +NLF M + P++ V A + + +GK ++ Y
Sbjct: 237 SWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYA 296
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
K E + + L+D++ KCG ++ +FE
Sbjct: 297 GKNKVEIDDVLGSALVDMYSKCGSIDKALQVFE--------------------------- 329
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+ +++ ++W+A++ +A+ G E+ ++ M + + PN ++ G+L+AC+
Sbjct: 330 ---TLPKRNAITWSAIIGAFAMHGRAEDA--IIHFHLMGKAGVTPNDVAYIGILSACSHA 384
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V+ G++ H+ G L R + + ++ R+G + +
Sbjct: 385 GLVEEGRSFFS-------HMVKVVG-----------LQPR-IEHYGCMVDLLGRAGHLEE 425
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDM 321
A +L+R++ ++P+ V ++L AC + + L G V L+++
Sbjct: 426 AEELIRNM---PIEPDDVIWKALLGAC----KMHKNLKMGERVAETLMEL 468
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 62/152 (40%), Gaps = 30/152 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ELG +H + VE+ LGS L++++ W++++G
Sbjct: 286 LELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGA 345
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI----- 94
+ + G E+ + F+LM GV P+ + ACS G+ + +M+ +
Sbjct: 346 FAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQP 405
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126
+ E C ++DL + G +E L M
Sbjct: 406 RIEHYGC----MVDLLGRAGHLEEAEELIRNM 433
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 155/322 (48%), Gaps = 58/322 (18%)
Query: 52 LFY-LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLF 110
LFY LM+ +G+ PD F P ++K+C L + GK ++ + + F +A ++ L++++
Sbjct: 126 LFYQLMMLQGLDPDRFTFPSLFKSCGVLCE---GKQLHCHSTKLGFASDAYIQNTLMNMY 182
Query: 111 IKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAG 170
CG + +F++M VN K +VSW M+
Sbjct: 183 SNCGCLVSARKVFDKM-----VN-------------------------KSVVSWATMIGA 212
Query: 171 YALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LR 226
YA E L ME+ ++PN I+L VL ACA+ + ++ K +H Y+ +
Sbjct: 213 YAQWDLPHEAIKLFRRMEI--ASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIG 270
Query: 227 HHIHLSTACGFVICSC-------SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
H L++A V C C +FN++ +++ WN +I+ V +AL L ++
Sbjct: 271 FHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEM 330
Query: 280 IVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW-----------NALIDMYGRCGAI 328
++ VK + VT+ S+L AC L AL G ++ AL+DMY +CG+I
Sbjct: 331 QLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSI 390
Query: 329 QKSRKIFVLMPHKNLVSWNVMI 350
+ + ++F MP K++++W +I
Sbjct: 391 ESAMRVFQEMPEKDVMTWTALI 412
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/380 (22%), Positives = 160/380 (42%), Gaps = 76/380 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G Q+H H G A++ + L+ ++ N W +M+G Y
Sbjct: 156 GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQ 215
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
E + LF M V+P+ V AC+ +D K V+ Y+ + +
Sbjct: 216 WDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVL 275
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L+D++ KCG + L F+K+ +K+L
Sbjct: 276 TSALMDVYCKCGCYPLARDL------------------------------FNKMPEKNLF 305
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
WN M+ G+ EE +L +EM++ + ++ + ++++ +L AC + ++LGK +H
Sbjct: 306 CWNIMINGHVEDSDYEEALSLFNEMQL--SGVKGDKVTMASLLIACTHLGALELGKWLHV 363
Query: 223 YVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
Y+ + I + A CG + + VF ++ +DV+ W ++I GQ +
Sbjct: 364 YIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLK 423
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA------------LI 319
AL+L ++ ++ VKP+ +T V VL AC + +G+ + + N ++
Sbjct: 424 ALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMV 483
Query: 320 DMYGRCGAIQKSRKIFVLMP 339
DM GR G I ++ + MP
Sbjct: 484 DMLGRAGRIAEAEDLIQNMP 503
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 109/218 (50%), Gaps = 21/218 (9%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA--- 209
F++I + N+++ GY + L ++ M+Q + P+ + + +C
Sbjct: 97 FNQIPNPTTFTCNSIIRGYTNKNLPRQAI-LFYQLMMLQ-GLDPDRFTFPSLFKSCGVLC 154
Query: 210 -----QVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
KLG A Y+ +++ + CG ++ + VF+++ + VV W ++I A+
Sbjct: 155 EGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYA 214
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSF 313
+ +A+ L R + +A+VKPN +T+V+VL AC + L G+G +
Sbjct: 215 QWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTV 274
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ +AL+D+Y +CG +R +F MP KNL WN+MI+
Sbjct: 275 LTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMIN 312
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/324 (21%), Positives = 135/324 (41%), Gaps = 85/324 (26%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+E QVH ++ G+ L S L++V+C W M+
Sbjct: 254 LETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMING 313
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ YEE ++LF M GV+ D + AC+ L +GK
Sbjct: 314 HVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGK-------------- 359
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
L ++I+ ++E+ D + +L+D YAKC ++ + F ++ +K
Sbjct: 360 ------WLHVYIEKEKIEV----------DVALGTALVDMYAKCGSIESAMRVFQEMPEK 403
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+++W A++ G A+ G + L EM+M ++++P+ I+ GVLAAC+
Sbjct: 404 DVMTWTALIVGLAMCGQGLKALELFHEMQM--SEVKPDAITFVGVLAACSHA-------- 453
Query: 220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTR-----DVVVWNSIISAFVRSGQVVDALD 274
G V + FN + + + + ++ R+G++ +A D
Sbjct: 454 ----------------GLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAED 497
Query: 275 LLRDVIVANVKPNTVTIVSVLPAC 298
L++++ +A P+ +V +L AC
Sbjct: 498 LIQNMPMA---PDYFVLVGLLSAC 518
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
VFNQ+ NSII + A+ + +++ + P+ T S+ +C L
Sbjct: 96 VFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE 155
Query: 304 LPQ--------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
Q G + +++ N L++MY CG + +RK+F M +K++VSW MI Y
Sbjct: 156 GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYA 214
>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 848
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 98/396 (24%), Positives = 178/396 (44%), Gaps = 80/396 (20%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYN 41
L ++HA L+V G F+ +L+ ++ + W SM+ Y
Sbjct: 91 LAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYV 150
Query: 42 VLGYYEEIVNLFY-LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G++ E ++ FY L++ + D + P V KAC L D G+ ++ ++ + F+
Sbjct: 151 RNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVD---GRKIHCWVFKLGFQ--- 204
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
D V SLI Y++ ++ ++ F + +D
Sbjct: 205 ---------------------------WDVFVAASLIHMYSRFGFVGIARSLFDDMPFRD 237
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+ SWNAM++G G + ++LDEM + +M ++++++ +L CAQ+ + I
Sbjct: 238 MGSWNAMISGLIQNGNAAQALDVLDEMRLEGINM--DSVTVASILPVCAQLGDISTATLI 295
Query: 221 HGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H YV++H I++ G + + VF Q+ RDVV WNSII+A+ ++
Sbjct: 296 HLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDP 355
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----W--------NA 317
V A + + ++P+ +T+VS+ + F+ W NA
Sbjct: 356 VTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNA 415
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
++DMY + G I + K+F L+P K++VSWN +IS Y
Sbjct: 416 VMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGY 451
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 126/250 (50%), Gaps = 26/250 (10%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
+ V+N+LI+ YAK L + F ++ +D+VSWN+++A Y +M+
Sbjct: 307 ELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQ 366
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH------------IHLSTACG 236
+ ++P+ ++L + + AQ + K +++HG+++R + + G
Sbjct: 367 L--NGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLG 424
Query: 237 FVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVL 295
+ + VFN + +DVV WN++IS + ++G +A+++ R + +K N T VS+L
Sbjct: 425 VIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSIL 484
Query: 296 PACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLV 344
A + AL QG L FV LID+YG+CG + + +F +P ++ V
Sbjct: 485 AAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSV 544
Query: 345 SWNVMISVYG 354
WN +IS +G
Sbjct: 545 PWNAIISCHG 554
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 86/388 (22%), Positives = 162/388 (41%), Gaps = 74/388 (19%)
Query: 7 VHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNVLGY 45
+H ++I G+E F+ + L+ ++ +W S++ Y
Sbjct: 295 IHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDD 354
Query: 46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP 105
F+ M G+ PD + ++ +DY+ + V+ +++ +R
Sbjct: 355 PVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIM----------RRG 404
Query: 106 LLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWN 165
L ME ++ N+++D YAK + +H F+ I KD+VSWN
Sbjct: 405 WL--------MEAV-----------VIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWN 445
Query: 166 AMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL 225
+++GY G E + ME + +++ N + +LAA A V ++ G IHG+++
Sbjct: 446 TLISGYTQNGLASEAIEVYRMMEECR-EIKLNQGTWVSILAAYAHVGALQQGMRIHGHLI 504
Query: 226 RHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALD 274
+ ++HL CG ++ + +F Q+ V WN+IIS G AL
Sbjct: 505 KTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALK 564
Query: 275 LLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALIDMYG 323
L R++ VKP+ VT +S+L AC + + G+ + ++D+ G
Sbjct: 565 LFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQEYGIKPSLKHYGCMVDLLG 624
Query: 324 RCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
R G ++ + MP H + W ++
Sbjct: 625 RAGFLEMAYDFIKDMPLHPDASIWGALL 652
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 67/151 (44%), Gaps = 29/151 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
++ G+++H HLI + L F+G+ L++++ W +++
Sbjct: 493 LQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISC 552
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY----DYMISIK 95
+ + G+ E+ + LF M D+GV+PDH + ACS GK + +Y I
Sbjct: 553 HGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQEYGIKPS 612
Query: 96 FEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126
+ C ++DL + G +E+ ++M
Sbjct: 613 LKHYGC----MVDLLGRAGFLEMAYDFIKDM 639
>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 999
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 87/385 (22%), Positives = 174/385 (45%), Gaps = 68/385 (17%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
+LG Q+H ++ G + ++ S L++++ +WT+M+ Y
Sbjct: 455 DLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGY 514
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+ E +NLF M D+G++ D+ AC+ ++ G+ ++ +
Sbjct: 515 TQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIH---------AQS 565
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
C+ SG D + N+L+ YA+C ++ ++ F +I KD
Sbjct: 566 CL-----------------SGY----SDDLSIGNALVSLYARCGKVREAYAAFDQIYAKD 604
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
VSWN++++G+A G+ EE N+ +M + ++ N+ + ++A A + V++GK I
Sbjct: 605 NVSWNSLVSGFAQSGYFEEALNIFAQMN--KAGLEINSFTFGSAVSAAANIANVRIGKQI 662
Query: 221 HGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280
HG + + T + +++ + T D + WNS+I+ + + G +AL L D+
Sbjct: 663 HGMIRKTGYDSETEVSNAL--ITLYAKCGTIDDISWNSMITGYSQHGCGFEALKLFEDMK 720
Query: 281 VANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA------------LIDMYGRCGAI 328
+V PN VT V VL AC + + +G+ + A ++D+ GR G +
Sbjct: 721 QLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLL 780
Query: 329 QKSRKIFVLMP-HKNLVSWNVMISV 352
++++ MP + + W ++S
Sbjct: 781 SRAKRFVEEMPIQPDAMVWRTLLSA 805
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/378 (24%), Positives = 166/378 (43%), Gaps = 73/378 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNL------FYLMI 57
G Q H++ I G+ + LL+++ + + + Y ++ NL F M
Sbjct: 371 GKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQ 430
Query: 58 DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRME 117
+G+ P+ F P + K C+ L +G+ ++ ++ F+ N V L+D++ K G+++
Sbjct: 431 IEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLD 490
Query: 118 ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFR 177
LK+ F ++K+ D+VSW AM+AGY
Sbjct: 491 --------------------------HALKI----FRRLKENDVVSWTAMIAGYTQHDKF 520
Query: 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH------GY-----VLR 226
E NL EM+ ++ + I + ++ACA ++ + G+ IH GY +
Sbjct: 521 TEALNLFKEMQ--DQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGN 578
Query: 227 HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286
+ L CG V + + F+Q+ +D V WNS++S F +SG +AL++ + A ++
Sbjct: 579 ALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEI 638
Query: 287 NTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIF 335
N+ T S + A +A + G + + V NALI +Y +CG I
Sbjct: 639 NSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDD----- 693
Query: 336 VLMPHKNLVSWNVMISVY 353
+SWN MI+ Y
Sbjct: 694 --------ISWNSMITGY 703
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 138/326 (42%), Gaps = 67/326 (20%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W + + + LF M+ K V D + V + CS
Sbjct: 131 WNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLRGCS---------------- 174
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
GNA R + + K ITSG + + N LID Y K +L +
Sbjct: 175 -----GNAVSFRFVEQIHAKT----ITSGF----ESSTFICNPLIDLYFKNGFLSSAKKV 221
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F +K +D VSW AM++G + G+ EE L ++ VL+AC +V+
Sbjct: 222 FENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI----------------VLSACTKVE 265
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ GK +HG VL+ + L + G + + +F+ +S RD V +NS+IS
Sbjct: 266 FFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLIS 325
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-------- 313
+ G + AL L + + + KP+ VT+ S+L AC + ALP G S+
Sbjct: 326 GLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTS 385
Query: 314 ---VWNALIDMYGRCGAIQKSRKIFV 336
V +L+D+Y +C I+ + + F+
Sbjct: 386 DIVVEGSLLDLYVKCSDIKTAHEFFL 411
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 93/230 (40%), Gaps = 21/230 (9%)
Query: 136 LIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ 195
LIDFY L + F ++ + L WN + + V L M +
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFD 162
Query: 196 PNTISLSGVLAACA------------QVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCS 243
++ VL C+ K + G ++ I L GF+ +
Sbjct: 163 ERIFAV--VLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKK 220
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
VF L RD V W ++IS ++G +A+ L ++++ T V +L
Sbjct: 221 VFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIVLS-----ACTKVEFFEFGKQLHG 275
Query: 304 L--PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
L QG + ++V NAL+ +Y R G + + +IF M ++ VS+N +IS
Sbjct: 276 LVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLIS 325
>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 887
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 155/344 (45%), Gaps = 54/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ Y+ G + + ++ M G PD V KAC D +G+ ++ ++
Sbjct: 227 SWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACYIAGDIDLGRQLHAHV 286
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I F + + L+ ++ G++E S +
Sbjct: 287 IKSWFGHHLTSQNALISMYTNFGQIEHASNV----------------------------- 317
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F++I KDL+SW M+ GY G+R E L ++ + Q QPN V +AC+ +
Sbjct: 318 -FTRIPTKDLISWGTMITGYIQLGYRVEALYLFRDL-LRQGTYQPNEFIFGSVFSACSSL 375
Query: 212 KGVKLGKAIHG----YVLRHHI-------HLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ GK +HG + LR ++ + GF+ + F Q+ D+V WN+II
Sbjct: 376 LELEYGKQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAII 435
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------- 313
+AF +G +A+D R +I + P+++T +S+L C L QG S+
Sbjct: 436 AAFADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHSYIVKIGFD 495
Query: 314 ----VWNALIDMYGRCGAIQKSRKIFV-LMPHKNLVSWNVMISV 352
V N+L+ MY +C + + +F + + NLVSWN ++S
Sbjct: 496 KEITVCNSLLTMYTKCSHLHDALNVFRDISRNANLVSWNAILSA 539
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 104/400 (26%), Positives = 180/400 (45%), Gaps = 79/400 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
++LG Q+HAH+I + L+ ++ N W +M+
Sbjct: 276 IDLGRQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPTKDLISWGTMITG 335
Query: 40 YNVLGYYEEIVNLFYLMIDKGV-RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
Y LGY E + LF ++ +G +P+ F+ V+ ACS L + GK V+
Sbjct: 336 YIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQVH---------- 385
Query: 99 NACVKRPLL-DLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
CVK L ++F C SL D YAK +L + F +IK
Sbjct: 386 GMCVKFGLRRNVFAGC---------------------SLCDMYAKFGFLPSAKMAFCQIK 424
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
D+VSWNA++A +A G E + +MI + P++I+ +L C + G
Sbjct: 425 NPDIVSWNAIIAAFADNGDANEAIDFF--RQMIHIGLTPDSITYISLLCTCGSPVRLNQG 482
Query: 218 KAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTR-DVVVWNSIISAFVR 265
+ IH Y+++ + + T C + + +VF +S ++V WN+I+SA ++
Sbjct: 483 RQIHSYIVKIGFDKEITVCNSLLTMYTKCSHLHDALNVFRDISRNANLVSWNAILSACLQ 542
Query: 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFV 314
Q + L +++ + KP+++TI ++L C +L +L GL V
Sbjct: 543 KKQEGETFRLYKEMHFSGNKPDSITITTLLGTCAELTSLGVGNQVHCYSIKSGLILDVSV 602
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
N LIDMY +CG+++ +R +F + ++VSW+ +I Y
Sbjct: 603 CNGLIDMYAKCGSLKHARDVFDSTQNLDIVSWSSLIVGYA 642
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 125/247 (50%), Gaps = 25/247 (10%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
++ N +I+ Y KC +K + F ++ ++VSW +M++GY+ G + ++ ++M
Sbjct: 195 ILQNHMINMYGKCGSMKDARKVFDTMQLPNVVSWTSMISGYSQNGQANDA--IIMYIQMT 252
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HH-------IHLSTACGFVI 239
++ P+ ++ V+ AC + LG+ +H +V++ HH I + T G +
Sbjct: 253 RSGQFPDQLTFGSVIKACYIAGDIDLGRQLHAHVIKSWFGHHLTSQNALISMYTNFGQIE 312
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVLPAC 298
+ +VF ++ T+D++ W ++I+ +++ G V+AL L RD++ +PN SV AC
Sbjct: 313 HASNVFTRIPTKDLISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSAC 372
Query: 299 LKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
L L GL F +L DMY + G + ++ F + + ++VSWN
Sbjct: 373 SSLLELEYGKQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWN 432
Query: 348 VMISVYG 354
+I+ +
Sbjct: 433 AIIAAFA 439
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 139/340 (40%), Gaps = 65/340 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEV-------------FC--------NWTSMMGM 39
+E G QVH + G+ F G L ++ FC +W +++
Sbjct: 378 LEYGKQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIAA 437
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ G E ++ F MI G+ PD + C G+ ++ Y++ I F
Sbjct: 438 FADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHSYIVKIGF--- 494
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKI-KQ 158
D++ V NSL+ Y KC +L + F I +
Sbjct: 495 ---------------------------DKEITVCNSLLTMYTKCSHLHDALNVFRDISRN 527
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+LVSWNA+L+ E L EM + +P++I+++ +L CA++ + +G
Sbjct: 528 ANLVSWNAILSACLQKKQEGETFRLYKEMHF--SGNKPDSITITTLLGTCAELTSLGVGN 585
Query: 219 AIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
+H Y ++ I + CG + + VF+ D+V W+S+I + + G
Sbjct: 586 QVHCYSIKSGLILDVSVCNGLIDMYAKCGSLKHARDVFDSTQNLDIVSWSSLIVGYAQCG 645
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
+AL+L R + V+PN VT + L AC + + +G
Sbjct: 646 LGHEALNLFRIMTNLGVQPNEVTYLGALSACSHIGLVEEG 685
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 95/200 (47%), Gaps = 24/200 (12%)
Query: 176 FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR--------- 226
++E + ++ + +P+T + ++ ACA + + K IH +VL+
Sbjct: 139 YKEALEAFDFHLKNSNSHFEPST--YTSLVLACANFRSLDYAKKIHDHVLKSNYQPSIIL 196
Query: 227 --HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV 284
H I++ CG + + VF+ + +VV W S+IS + ++GQ DA+ + + +
Sbjct: 197 QNHMINMYGKCGSMKDARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQ 256
Query: 285 KPNTVTIVSVLPACLKLAALPQGLGTGSFV---W--------NALIDMYGRCGAIQKSRK 333
P+ +T SV+ AC + G + V W NALI MY G I+ +
Sbjct: 257 FPDQLTFGSVIKACYIAGDIDLGRQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASN 316
Query: 334 IFVLMPHKNLVSWNVMISVY 353
+F +P K+L+SW MI+ Y
Sbjct: 317 VFTRIPTKDLISWGTMITGY 336
>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 566
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 94/395 (23%), Positives = 180/395 (45%), Gaps = 48/395 (12%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNV 42
G +HA ++ G E ++ + L+ ++ +W S++ Y
Sbjct: 96 GSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYGQ 155
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+ E++ +F M GV+ D KV AC+ L ++ V + DY+ E + +
Sbjct: 156 CKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLGEWGVADAMVDYIEENNVEIDVYL 215
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
L+D++ + G + + G+F++M LV+ N++I Y K L + F + Q+D+
Sbjct: 216 GNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDV 275
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
+SW M+ Y+ G E L EM+++ ++P+ I+++ VL+ACA + +G+A H
Sbjct: 276 ISWTNMITSYSQAGQFTEALRLFK--EMMESKVKPDEITVASVLSACAHTGSLDVGEAAH 333
Query: 222 GYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y+ ++ I + CG V + VF ++ +D V W SIIS +G
Sbjct: 334 DYIQKYDVKADIYVGNALIDMYCKCGVVEKALEVFKEMRKKDSVSWTSIISGLAVNGFAD 393
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNAL 318
ALD ++ V+P+ V +L AC + +GL + + +
Sbjct: 394 SALDYFSRMLREVVQPSHGAFVGILLACAHAGLVDKGLEYFESMEKVYGLKPEMKHYGCV 453
Query: 319 IDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+D+ R G +Q++ + MP ++V W +++S
Sbjct: 454 VDLLSRSGNLQRAFEFIKEMPVTPDVVIWRILLSA 488
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/372 (22%), Positives = 167/372 (44%), Gaps = 85/372 (22%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W M+ ++V E + ++ LM +G+ ++ ++KAC+ + D G ++ ++
Sbjct: 45 WNIMIRGWSVSDQPNEAIRMYNLMYRQGLLGNNLTYLFLFKACARVPDVSCGSTIHARVL 104
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ FE + V+N+LI+ Y C +L ++
Sbjct: 105 KLGFESH------------------------------LYVSNALINMYGSCGHLGLAQKV 134
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ ++DLVSWN+++ GY EV + + M + ++ + +++ V+ AC +
Sbjct: 135 FDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRV--AGVKGDAVTMVKVVLACTSLG 192
Query: 213 GVKLGKAIHGYVLRHHI--------------------HLSTA------------------ 234
+ A+ Y+ +++ HL+
Sbjct: 193 EWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAMIM 252
Query: 235 ----CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
G ++ + +F+ +S RDV+ W ++I+++ ++GQ +AL L ++++ + VKP+ +T
Sbjct: 253 GYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEIT 312
Query: 291 IVSVLPACLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLMP 339
+ SVL AC +L G +V NALIDMY +CG ++K+ ++F M
Sbjct: 313 VASVLSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKALEVFKEMR 372
Query: 340 HKNLVSWNVMIS 351
K+ VSW +IS
Sbjct: 373 KKDSVSWTSIIS 384
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 111/228 (48%), Gaps = 24/228 (10%)
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
+H F +I + L WN M+ G+++ E + + M + + N ++ + AC
Sbjct: 30 AHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMYNLM--YRQGLLGNNLTYLFLFKAC 87
Query: 209 AQVKGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWN 257
A+V V G IH VL+ H+++S A CG + + VF+++ RD+V WN
Sbjct: 88 ARVPDVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQKVFDEMPERDLVSWN 147
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQ 306
S++ + + + + L + + VA VK + VT+V V+ AC L
Sbjct: 148 SLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLGEWGVADAMVDYIEEN 207
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ ++ N LIDMYGR G + +R +F M +NLVSWN MI YG
Sbjct: 208 NVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAMIMGYG 255
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 114/251 (45%), Gaps = 45/251 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ Y+ G + E + LF M++ V+PD V AC+ VG+ +DY+
Sbjct: 277 SWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEITVASVLSACAHTGSLDVGEAAHDYI 336
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
K++ A D V N+LID Y KC ++ +
Sbjct: 337 Q--KYDVKA----------------------------DIYVGNALIDMYCKCGVVEKALE 366
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++++KD VSW ++++G A+ GF + + M++ +QP+ + G+L ACA
Sbjct: 367 VFKEMRKKDSVSWTSIISGLAVNGFADSALDYFS--RMLREVVQPSHGAFVGILLACAHA 424
Query: 212 KGVKLG-------KAIHGY--VLRHH---IHLSTACGFVICSCSVFNQLS-TRDVVVWNS 258
V G + ++G ++H+ + L + G + + ++ T DVV+W
Sbjct: 425 GLVDKGLEYFESMEKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKEMPVTPDVVIWRI 484
Query: 259 IISAFVRSGQV 269
++SA G +
Sbjct: 485 LLSASQVHGNI 495
>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 94/379 (24%), Positives = 172/379 (45%), Gaps = 75/379 (19%)
Query: 5 IQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNVL 43
Q HAH++ G++ F+ + L+ + + WT+M+ +
Sbjct: 123 FQFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRN 182
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G E + F M GV + V KA +++D R G+ V+
Sbjct: 183 GSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHG-------------- 228
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
L+++ GR++ D + +SL+D Y KC + F ++ +++V+
Sbjct: 229 -----LYLETGRVKC----------DVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVT 273
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
W A++AGY R +L EM+++D+ PN +LS VL+ACA V + G+ +H Y
Sbjct: 274 WTALIAGYVQS--RCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCY 331
Query: 224 VLRHHIHLSTACG------FVICSCS-----VFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
++++ I ++T G +V C C VF +L ++V W ++I+ F G DA
Sbjct: 332 MIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDA 391
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-----TGSFV-------WNALID 320
DL ++ ++V PN VT ++VL AC + +G G F + ++D
Sbjct: 392 FDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVD 451
Query: 321 MYGRCGAIQKSRKIFVLMP 339
++GR G +++++ + MP
Sbjct: 452 LFGRKGLLEEAKALIERMP 470
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 126/252 (50%), Gaps = 25/252 (9%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
+D D V NSLI Y+ + F + KD+V+W AM+ G+ G E ++
Sbjct: 134 LDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEA--MVY 191
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH-------HIHLSTACGFV 238
+EM +T + N +++ VL A +V+ V+ G+++HG L I S +
Sbjct: 192 FVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYG 251
Query: 239 ICSC-----SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
CSC VF+++ +R+VV W ++I+ +V+S + + +++ ++V PN T+ S
Sbjct: 252 KCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSS 311
Query: 294 VLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
VL AC + AL +G + + LID+Y +CG ++++ +F + KN
Sbjct: 312 VLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKN 371
Query: 343 LVSWNVMISVYG 354
+ +W MI+ +
Sbjct: 372 VYTWTAMINGFA 383
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 99/212 (46%), Gaps = 22/212 (10%)
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG---------- 213
W++++ ++ G + L M + + P+ + +L A +++
Sbjct: 70 WDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRDSNPFQFHAHI 129
Query: 214 VKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
VK G +V I ++ G + +F+ +DVV W ++I FVR+G +A+
Sbjct: 130 VKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAM 189
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGS-----FVWNALIDM 321
++ V N +T+VSVL A K+ + G L TG F+ ++L+DM
Sbjct: 190 VYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDM 249
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
YG+C ++K+F MP +N+V+W +I+ Y
Sbjct: 250 YGKCSCYDDAQKVFDEMPSRNVVTWTALIAGY 281
>gi|297827565|ref|XP_002881665.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327504|gb|EFH57924.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 836
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 161/345 (46%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +MM Y G +EE++ LF +M + VR + +A + + + G +++Y
Sbjct: 267 SWGTMMAAYAHNGSFEEVLELFDVMRNYDVRMNKVAAASALQAAAYVGNLEKGIAIHEYT 326
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + V L++++ KCG +E+ L
Sbjct: 327 VQQGMMSDISVATSLINMYSKCGELELAEQL----------------------------- 357
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F KIK +D+VSW+AM+A + G +E +L +M++T +PN ++L+ VL CA V
Sbjct: 358 -FIKIKDRDVVSWSAMIASFEQAGQHDEALSLF--RDMMRTHFKPNAVTLTSVLQGCAGV 414
Query: 212 KGVKLGKAIHGYVLRHHI--HLSTA---------CGFVICSCSVFNQLSTRDVVVWNSII 260
+LGK+IH Y ++ + L TA CG + F +L +D + +N++
Sbjct: 415 AASRLGKSIHCYAIKADVESELETATAVISMYAKCGLFSPTLKAFERLPIKDAIAFNALA 474
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLG 309
+ + G A D+ +++ + V P++ T+V +L C + + G
Sbjct: 475 QGYTQIGDASKAFDVYKNMKLHGVCPDSGTMVGMLQTCALCSDYARGSCVYGQIIKHGFD 534
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISVY 353
+ V +ALIDM+ +C A+ ++ +F K+ VSWN+M++ Y
Sbjct: 535 SECHVAHALIDMFTKCDALAAAKSLFDKCGFEKSTVSWNIMMNGY 579
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 108/395 (27%), Positives = 172/395 (43%), Gaps = 77/395 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
E G+++H + G E ++G+ L+E++C W +M+
Sbjct: 117 EEGLRIHDLIAEMGFESDVYIGTALVEMYCKAGDLVSARQVFDKMPVKDIVTWNTMVSGL 176
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G E + LF M V DH + A S+L+ + +
Sbjct: 177 AQNGCSSEALRLFRDMHSSFVDIDHVSLYNLIPAVSKLE-----------------KNDV 219
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
C R L L IK G TS ++ LID Y KC L + C F ++ KD
Sbjct: 220 C--RCLHGLVIKKG---FTSAF----------SSGLIDMYCKCADLYAAECVFEEVFSKD 264
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
SW M+A YA G EEV L D M D++ N ++ + L A A V ++ G AI
Sbjct: 265 ESSWGTMMAAYAHNGSFEEVLELFDVMR--NYDVRMNKVAAASALQAAAYVGNLEKGIAI 322
Query: 221 HGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H Y ++ I++ + CG + + +F ++ RDVV W+++I++F ++GQ
Sbjct: 323 HEYTVQQGMMSDISVATSLINMYSKCGELELAEQLFIKIKDRDVVSWSAMIASFEQAGQH 382
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------VWNAL 318
+AL L RD++ + KPN VT+ SVL C +AA G + A+
Sbjct: 383 DEALSLFRDMMRTHFKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKADVESELETATAV 442
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
I MY +CG + K F +P K+ +++N + Y
Sbjct: 443 ISMYAKCGLFSPTLKAFERLPIKDAIAFNALAQGY 477
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/346 (23%), Positives = 161/346 (46%), Gaps = 55/346 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W++M+ + G ++E ++LF M+ +P+ V + C+ + R+GK ++ Y
Sbjct: 368 SWSAMIASFEQAGQHDEALSLFRDMMRTHFKPNAVTLTSVLQGCAGVAASRLGKSIHCYA 427
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I +++ + ++I YAKC +
Sbjct: 428 IKA------------------------------DVESELETATAVISMYAKCGLFSPTLK 457
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ KD +++NA+ GY G + ++ M++ + P++ ++ G+L CA
Sbjct: 458 AFERLPIKDAIAFNALAQGYTQIGDASKAFDVYKNMKL--HGVCPDSGTMVGMLQTCALC 515
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLS-TRDVVVWNSI 259
G ++G +++H I + T C + + S+F++ + V WN +
Sbjct: 516 SDYARGSCVYGQIIKHGFDSECHVAHALIDMFTKCDALAAAKSLFDKCGFEKSTVSWNIM 575
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------ 313
++ ++ GQ +A+ R + V +PN VT V+++ A +LAAL G+ S
Sbjct: 576 MNGYLLHGQAEEAIATFRQMKVEKFQPNAVTFVNIVRAAAELAALSLGMSVHSSLIQFGF 635
Query: 314 -----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V N+L+DMY +CG I+ S+K F+ + +KN+VSWN M+S Y
Sbjct: 636 CSHTPVGNSLVDMYAKCGMIESSKKCFIEIRNKNMVSWNTMLSAYA 681
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/342 (22%), Positives = 156/342 (45%), Gaps = 53/342 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLF-YLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W SM+ Y G ++E + +F Y+ KG+ PD + KAC+ D+ G ++D +
Sbjct: 67 WNSMIRGYTRAGLHKEALEVFGYMSEAKGIDPDKYTFTFALKACAGSMDFEEGLRIHDLI 126
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ FE D + +L++ Y K L +
Sbjct: 127 AEMGFE------------------------------SDVYIGTALVEMYCKAGDLVSARQ 156
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K+ KD+V+WN M++G A G E L +M D+ + +SL ++ A +++
Sbjct: 157 VFDKMPVKDIVTWNTMVSGLAQNGCSSEALRLFRDMHSSFVDI--DHVSLYNLIPAVSKL 214
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFV--ICSCS-------VFNQLSTRDVVVWNSIISA 262
+ + + +HG V++ + + G + C C+ VF ++ ++D W ++++A
Sbjct: 215 EKNDVCRCLHGLVIKKGFTSAFSSGLIDMYCKCADLYAAECVFEEVFSKDESSWGTMMAA 274
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF--------- 313
+ +G + L+L + +V+ N V S L A + L +G+ +
Sbjct: 275 YAHNGSFEEVLELFDVMRNYDVRMNKVAAASALQAAAYVGNLEKGIAIHEYTVQQGMMSD 334
Query: 314 --VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V +LI+MY +CG ++ + ++F+ + +++VSW+ MI+ +
Sbjct: 335 ISVATSLINMYSKCGELELAEQLFIKIKDRDVVSWSAMIASF 376
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 111/242 (45%), Gaps = 21/242 (8%)
Query: 133 NNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQT 192
+N LI+ Y+ + +S + +V WN+M+ GY G +E + M +
Sbjct: 36 HNQLINAYSLFQRPDLSRKIVDSVPYPGVVLWNSMIRGYTRAGLHKEALEVFGYMSEAK- 94
Query: 193 DMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICS 241
+ P+ + + L ACA + G IH + +++ TA G ++ +
Sbjct: 95 GIDPDKYTFTFALKACAGSMDFEEGLRIHDLIAEMGFESDVYIGTALVEMYCKAGDLVSA 154
Query: 242 CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA---- 297
VF+++ +D+V WN+++S ++G +AL L RD+ + V + V++ +++PA
Sbjct: 155 RQVFDKMPVKDIVTWNTMVSGLAQNGCSSEALRLFRDMHSSFVDIDHVSLYNLIPAVSKL 214
Query: 298 -----CLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
C L L G S + LIDMY +C + + +F + K+ SW M++
Sbjct: 215 EKNDVCRCLHGLVIKKGFTSAFSSGLIDMYCKCADLYAAECVFEEVFSKDESSWGTMMAA 274
Query: 353 YG 354
Y
Sbjct: 275 YA 276
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 118/280 (42%), Gaps = 44/280 (15%)
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y +G + +++ M GV PD + + C+ DY G VY +I F
Sbjct: 477 YTQIGDASKAFDVYKNMKLHGVCPDSGTMVGMLQTCALCSDYARGSCVYGQIIKHGF--- 533
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK-Q 158
D + V ++LID + KC L + F K +
Sbjct: 534 ---------------------------DSECHVAHALIDMFTKCDALAAAKSLFDKCGFE 566
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
K VSWN M+ GY L G EE +M++ QPN ++ ++ A A++ + LG
Sbjct: 567 KSTVSWNIMMNGYLLHGQAEEAIATFRQMKV--EKFQPNAVTFVNIVRAAAELAALSLGM 624
Query: 219 AIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
++H +++ + + CG + S F ++ +++V WN+++SA+ G
Sbjct: 625 SVHSSLIQFGFCSHTPVGNSLVDMYAKCGMIESSKKCFIEIRNKNMVSWNTMLSAYAAHG 684
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
A+ L + +KP++V+ +SVL AC +G
Sbjct: 685 LANCAVSLFLSMQENELKPDSVSFLSVLSACRHAGLAEEG 724
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 85/197 (43%), Gaps = 32/197 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W MM Y + G EE + F M + +P+ + +A +EL +G V+ +
Sbjct: 571 SWNIMMNGYLLHGQAEEAIATFRQMKVEKFQPNAVTFVNIVRAAAELAALSLGMSVHSSL 630
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I F C P V NSL+D YAKC ++ S
Sbjct: 631 IQFGF----CSHTP--------------------------VGNSLVDMYAKCGMIESSKK 660
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I+ K++VSWN ML+ YA G +L + M + +++P+++S VL+AC
Sbjct: 661 CFIEIRNKNMVSWNTMLSAYAAHGLANCAVSLF--LSMQENELKPDSVSFLSVLSACRHA 718
Query: 212 KGVKLGKAIHGYVLRHH 228
+ GK I + H
Sbjct: 719 GLAEEGKRIFKEMEERH 735
>gi|224083626|ref|XP_002307076.1| predicted protein [Populus trichocarpa]
gi|222856525|gb|EEE94072.1| predicted protein [Populus trichocarpa]
Length = 733
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 93/355 (26%), Positives = 159/355 (44%), Gaps = 50/355 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTS++G+ G+ E +NLF+ M V PD V + R GK + +
Sbjct: 303 SWTSVIGVCARFGFMNECLNLFWDMQVDDVYPDGIVVSCILLGFGNSMMVREGKAFHGLI 362
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFE-------------------------EM 126
+ + + V LL ++ K G + LF+ +
Sbjct: 363 VRRNYVLDDTVNNALLSMYCKFGTLNPAEKLFDGVHEWSKESWNTMVFGYVHCYIIKNSV 422
Query: 127 DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDE 186
D+D + NSLID Y K L ++ F + Q+D+V+WN +++ Y G E L DE
Sbjct: 423 DEDVSIANSLIDMYGKGGNLSIAWKMFCRT-QRDVVTWNTLISSYTHSGHYAEAITLFDE 481
Query: 187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA-------C 235
M I + PN+ +L VL+AC + ++ GK +H Y+ ++ L TA C
Sbjct: 482 M--ISEKLNPNSATLVIVLSACCHLPSLEKGKMVHQYIKEGGFELNVSLGTALVDMYAKC 539
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
G + S +FN + +DV+ WN +IS + G A+++ + + +NVKPN +T +S+L
Sbjct: 540 GQLEQSRELFNSMKEKDVISWNVMISGYGLHGDANSAMEVFQQMEQSNVKPNAITFLSLL 599
Query: 296 PACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
AC + +G + + + D+ GR G +Q++ + MP
Sbjct: 600 SACTHAGYVDEGKQLFDRMQYYSIKPNLKHFACMADLLGRSGNLQEAEDLVQSMP 654
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 140/300 (46%), Gaps = 78/300 (26%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
+V +SL+ Y+KC ++ +H F ++ KD+ SW +++ A GF E NL +M++
Sbjct: 271 VVQSSLLSMYSKCGNVEEAHNSFCQVVDKDVFSWTSVIGVCARFGFMNECLNLFWDMQV- 329
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHG------YVLRHHIH---LSTAC------ 235
D+ P+ I +S +L V+ GKA HG YVL ++ LS C
Sbjct: 330 -DDVYPDGIVVSCILLGFGNSMMVREGKAFHGLIVRRNYVLDDTVNNALLSMYCKFGTLN 388
Query: 236 ----------------------GFVIC---------SCSVFNQL---------------- 248
G+V C S+ N L
Sbjct: 389 PAEKLFDGVHEWSKESWNTMVFGYVHCYIIKNSVDEDVSIANSLIDMYGKGGNLSIAWKM 448
Query: 249 ---STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP 305
+ RDVV WN++IS++ SG +A+ L ++I + PN+ T+V VL AC L +L
Sbjct: 449 FCRTQRDVVTWNTLISSYTHSGHYAEAITLFDEMISEKLNPNSATLVIVLSACCHLPSLE 508
Query: 306 QG------LGTGSFVWN-----ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+G + G F N AL+DMY +CG +++SR++F M K+++SWNVMIS YG
Sbjct: 509 KGKMVHQYIKEGGFELNVSLGTALVDMYAKCGQLEQSRELFNSMKEKDVISWNVMISGYG 568
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 90/392 (22%), Positives = 158/392 (40%), Gaps = 73/392 (18%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNVLG 44
+ HA +I G F+ S+L+ ++ + W S++ + G
Sbjct: 50 KSHALIITTGNANNVFISSKLISLYASFRKPHSSTYVFDSTNQKDTFLWNSIIKSHFSNG 109
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
Y + + + M P+ F P + C+EL GK ++ ++S
Sbjct: 110 NYFKAFDFYIQMRYDNTPPNQFTIPMIVATCAELLWLEEGKYIHG-LVS----------- 157
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
SGLF E + V +S + YAKC ++ + F +I +D+VSW
Sbjct: 158 --------------KSGLFAE---NSAVGSSFVYMYAKCGVMEDASLMFDEIVVRDVVSW 200
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQP-NTISLSGVLAACAQVKGVKLGKAIHGY 223
A++ GY E+ L EM I D + N+ +L G AC + + G+ +HG
Sbjct: 201 TALVIGYVHNDDSEKGLECLCEMRRIGGDGEKVNSRTLEGGFQACGNLGAMIAGRCLHGL 260
Query: 224 VLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
++ + S + CG V + + F Q+ +DV W S+I R G + +
Sbjct: 261 AVKTGLGCSQVVQSSLLSMYSKCGNVEEAHNSFCQVVDKDVFSWTSVIGVCARFGFMNEC 320
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------VWNALIDM 321
L+L D+ V +V P+ + + +L + +G V NAL+ M
Sbjct: 321 LNLFWDMQVDDVYPDGIVVSCILLGFGNSMMVREGKAFHGLIVRRNYVLDDTVNNALLSM 380
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
Y + G + + K+F + + SWN M+ Y
Sbjct: 381 YCKFGTLNPAEKLFDGVHEWSKESWNTMVFGY 412
>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 133/243 (54%), Gaps = 25/243 (10%)
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
N+L+D YAKC L + F + + +V+W +++A YA G +E L EM+ +
Sbjct: 37 NTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMD--REG 94
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSC 242
+ P+ +++ VL ACA ++ GK +H Y+ + + + CG + +
Sbjct: 95 VSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDAN 154
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
SVF ++ +D++ WN++I + ++ +AL L D+++ +KP+ T+ +LPAC LA
Sbjct: 155 SVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVL-EMKPDGTTLACILPACASLA 213
Query: 303 ALPQG-------LGTGSF----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+L +G L G F V NAL+DMY +CG +R +F ++P K+L++W VMI+
Sbjct: 214 SLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIA 273
Query: 352 VYG 354
YG
Sbjct: 274 GYG 276
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/364 (24%), Positives = 164/364 (45%), Gaps = 59/364 (16%)
Query: 14 CGVELCAFLGSQLLEV--FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKV 71
CGV A L L+ V WTS++ Y G +E + LF+ M +GV PD F V
Sbjct: 46 CGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTV 105
Query: 72 YKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFL 131
AC+ GKDV++Y+ +M +
Sbjct: 106 LHACACNGSLENGKDVHNYIRE------------------------------NDMQSNIF 135
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V N+L+D YAKC ++ ++ F ++ KD++SWN M+ GY+ E +L +M +
Sbjct: 136 VCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVL-- 193
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVIC 240
+M+P+ +L+ +L ACA + + GK +HG++LR+ + + CG +
Sbjct: 194 -EMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVL 252
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ +F+ + T+D++ W +I+ + G +A+ ++ A ++P+ V+ +S+L AC
Sbjct: 253 ARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSH 312
Query: 301 LAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWN 347
L +G + + + ++D+ R G + + K MP + W
Sbjct: 313 SGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWG 372
Query: 348 VMIS 351
++S
Sbjct: 373 ALLS 376
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 91/172 (52%), Gaps = 22/172 (12%)
Query: 204 VLAACAQVKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRD 252
+L ACA V LG+A+HG ++ +H T CG + + VF+ +S R
Sbjct: 4 ILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRT 63
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----- 307
VV W S+I+A+ R G +A+ L ++ V P+ TI +VL AC +L G
Sbjct: 64 VVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHN 123
Query: 308 ------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ + FV NAL+DMY +CG+++ + +F+ MP K+++SWN MI Y
Sbjct: 124 YIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGY 175
>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 755
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 166/355 (46%), Gaps = 65/355 (18%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT+++ Y + + LF M++ G P ++ V ACS L+ GK V+ Y+I
Sbjct: 133 WTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLI 192
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+D D + NSL FY+K R L+ +
Sbjct: 193 KY------------------------------HIDFDTSIGNSLSSFYSKFRRLEFAIKA 222
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F IK+KD++SW ++++ G + +L M+M+ M+PN +L+ VL+AC +
Sbjct: 223 FKIIKEKDVISWTSVISSCCDNG--QAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVML 280
Query: 213 GVKLGKAIH------GY----VLRHHI-HLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ LG IH GY ++++ I +L CG++I + +F + T ++V WN++I+
Sbjct: 281 TLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIA 340
Query: 262 AFVRSGQVVD-----------ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG--- 307
+ + + AL + + + + +KP+ T SVL C L AL QG
Sbjct: 341 GHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQI 400
Query: 308 ----LGTGSF----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ +G V AL+ MY +CG+I K+ K F+ MP + ++SW MI+ +
Sbjct: 401 HGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFA 455
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 126/246 (51%), Gaps = 24/246 (9%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
+D V L++ Y+KC ++ +H F + ++++ +W +L GY L +
Sbjct: 97 EDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLF--I 154
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICS------ 241
+M++ P+ +L VL AC+ ++ ++ GK +H Y++++HI T+ G + S
Sbjct: 155 KMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFR 214
Query: 242 -----CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296
F + +DV+ W S+IS+ +GQ +L D++ +KPN T+ SVL
Sbjct: 215 RLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLS 274
Query: 297 ACLKLAALPQG---------LGTGS--FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
AC + L G LG GS + N+++ +Y +CG + +++K+F M NLV+
Sbjct: 275 ACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVT 334
Query: 346 WNVMIS 351
WN MI+
Sbjct: 335 WNAMIA 340
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/405 (21%), Positives = 166/405 (40%), Gaps = 84/405 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G QVHA+LI ++ +G+ L + +WTS++
Sbjct: 181 IEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISS 240
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
G ++ F M+ G++P+ + V AC + +G ++ I + +
Sbjct: 241 CCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGY--- 297
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
L+ NS++ Y KC +L + F ++
Sbjct: 298 ---------------------------GSSILIKNSIMYLYLKCGWLIEAQKLFEGMETL 330
Query: 160 DLVSWNAMLAGYA---------LGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+LV+WNAM+AG+A + + T L ++ ++ M+P+ + S VL+ C+
Sbjct: 331 NLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSN 390
Query: 211 VKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ ++ G+ IHG +++ + + CG + + F ++ +R ++ W S+
Sbjct: 391 LVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSM 450
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----- 314
I+ F R G AL L D+ + +KPN VT V VL AC + L +
Sbjct: 451 ITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYN 510
Query: 315 -------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMIS 351
+ LIDMY R G ++++ + M N W+++I+
Sbjct: 511 IKPVMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIA 555
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 77/170 (45%), Gaps = 22/170 (12%)
Query: 204 VLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRD 252
+L C + IHG++++ H + + CG + + VF+ L R+
Sbjct: 70 LLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRN 129
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS 312
V W ++++ +V++ + AL L ++ A P+ T+ VL AC L ++ G +
Sbjct: 130 VNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHA 189
Query: 313 F-----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ + N+L Y + ++ + K F ++ K+++SW +IS
Sbjct: 190 YLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVIS 239
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G FV L+++Y +CG ++ + K+F +P +N+ +W +++ Y
Sbjct: 94 GFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGY 140
>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 620
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 152/331 (45%), Gaps = 52/331 (15%)
Query: 46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP 105
+ E ++L+ M+ G PD F P + K+C+ L G+ ++ ++I E V
Sbjct: 31 FTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVIRGGCEAEPFVLTA 90
Query: 106 LLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWN 165
L+ ++ KCG +E +FEE + V +N
Sbjct: 91 LISMYCKCGLVEDARKVFEENPHSSQLG----------------------------VCYN 122
Query: 166 AMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG--- 222
A+++GY + + M+ +T + +++++ G++ C + + LG+++HG
Sbjct: 123 ALISGYTANSKVSDAAFMFRRMK--ETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECV 180
Query: 223 --------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALD 274
VL I + CG V +F+++ + ++ WN++IS + ++G D L+
Sbjct: 181 KGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLE 240
Query: 275 LLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNALIDMYG 323
L + + V P+ T+VSVL +C L A G G F+ NALI MY
Sbjct: 241 LFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYA 300
Query: 324 RCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
RCG + K+R +F +MP K+LVSW MI YG
Sbjct: 301 RCGNLAKARAVFDIMPVKSLVSWTAMIGCYG 331
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 88/382 (23%), Positives = 159/382 (41%), Gaps = 78/382 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------WTSMMGM-YNVL--GY 45
G Q+H H+I G E F+ + L+ ++C +S +G+ YN L GY
Sbjct: 69 GQQLHCHVIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGY 128
Query: 46 Y-----EEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+ +F M + GV D + C+ + +G+ ++
Sbjct: 129 TANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLH----------GE 178
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
CVK G + E+ V NS I Y KC ++ F ++ K
Sbjct: 179 CVK----------------GGTYSEV----AVLNSFITMYMKCGSVESGRRLFDEMPVKG 218
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
L++WNA+++GY+ G +V L ++M+ + + P+ +L VL++CA + K+G+ +
Sbjct: 219 LITWNAVISGYSQNGLAYDVLELFEQMK--SSGVCPDPFTLVSVLSSCAHLGAKKIGQEV 276
Query: 221 HGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
V ++ LS A CG + + +VF+ + + +V W ++I + G
Sbjct: 277 GELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMG 336
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNA 317
L L D+I ++P+ V VL AC +G L G ++
Sbjct: 337 ETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSC 396
Query: 318 LIDMYGRCGAIQKSRKIFVLMP 339
L+D+ GR G + ++ + MP
Sbjct: 397 LVDLLGRAGRLDEAMEFIDSMP 418
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 100/216 (46%), Gaps = 26/216 (12%)
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
SWN L A E +L M+++ P+ S +L +CA + G+ +H
Sbjct: 16 TSWNVRLRELAYQSLFTESISLY--RSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLH 73
Query: 222 GYVLRHH-----------IHLSTACGFVICSCSVF--NQLSTRDVVVWNSIISAFVRSGQ 268
+V+R I + CG V + VF N S++ V +N++IS + + +
Sbjct: 74 CHVIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSK 133
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQGLGTGSFVWNA 317
V DA + R + V ++VTI+ ++P C L + G + V N+
Sbjct: 134 VSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNS 193
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
I MY +CG+++ R++F MP K L++WN +IS Y
Sbjct: 194 FITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGY 229
>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
[Vitis vinifera]
Length = 781
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 157/344 (45%), Gaps = 54/344 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ ++E + +F M+ G+ D V +EL+D +G + +
Sbjct: 175 WNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAM 234
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ F +A V L L+ KCG +E L
Sbjct: 235 KVGFHSHAYVITGLACLYSKCGEIETARLL------------------------------ 264
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F +I Q DLVS+NAM++GY E L E+ + + + N+ S+ G++
Sbjct: 265 FGQIGQPDLVSYNAMISGYTCNNETESSVRLFKEL--LVSGEKVNSSSIVGLIPVFFPFG 322
Query: 213 GVKLGKAIHGYVLRHHIHLS----TACGFVICSCS-------VFNQLSTRDVVVWNSIIS 261
+ L + IHG+ + + + TA V + +F++ S + + WN++IS
Sbjct: 323 HLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMIS 382
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGT 310
+ ++G A+ L +++ V+PN VT+ S+L AC +L AL G +
Sbjct: 383 GYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFES 442
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
FV ALIDMY +CG+I +++++F +MP KN V+WN MIS YG
Sbjct: 443 NIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYG 486
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 119/229 (51%), Gaps = 25/229 (10%)
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
+L Y++ ++ + F + +K L SWNAM++GYA G E+ +L EM+ + +
Sbjct: 347 TALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQ--KCE 404
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH----HIHLSTA-------CGFVICSC 242
++PN ++++ +L+ACAQ+ + LGK +H + R +I +STA CG + +
Sbjct: 405 VRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQ 464
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
+F+ + ++ V WN++IS + G +AL+L +++ + V P VT +SVL AC
Sbjct: 465 RLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAG 524
Query: 303 ALPQG-------LGTGSFV-----WNALIDMYGRCGAIQKSRKIFVLMP 339
+ +G + F + ++D+ GR G + K+ MP
Sbjct: 525 LVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMP 573
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 113/270 (41%), Gaps = 54/270 (20%)
Query: 30 FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
+W +M+ Y G E+ ++LF M VRP+ + AC++L +GK V+D
Sbjct: 374 LASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHD 433
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
+ FE N V+ +LID YAKC + +
Sbjct: 434 LINRESFESN------------------------------IFVSTALIDMYAKCGSITEA 463
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
FS + +K+ V+WNAM++GY L G+ E NL + EM+ + + P ++ VL AC+
Sbjct: 464 QRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFN--EMLHSRVSPTGVTFLSVLYACS 521
Query: 210 QVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
V+ G I ++ H F L + ++ R+G +
Sbjct: 522 HAGLVREGDEIFRSMVHDH---------------GFEPLPEH----YACMVDLLGRAGNL 562
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACL 299
ALD +R + V+P ++L AC+
Sbjct: 563 DKALDFIRKM---PVEPGPPVWGALLGACM 589
>gi|15237290|ref|NP_200097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171558|sp|Q9FLX6.1|PP430_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g52850, chloroplastic; Flags: Precursor
gi|10177099|dbj|BAB10433.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332008885|gb|AED96268.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 893
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 91/395 (23%), Positives = 174/395 (44%), Gaps = 76/395 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLG---------------- 44
+E G +H+++IV G+ L L + L++ + ++ M VL
Sbjct: 240 LEFGKTIHSNIIVRGIPLNVVLKTSLVDFYSQFSKMEDAVRVLNSSGEQDVFLWTSVVSG 299
Query: 45 -----YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+E V F M G++P++F + CS ++ GK ++ I + FE +
Sbjct: 300 FVRNLRAKEAVGTFLEMRSLGLQPNNFTYSAILSLCSAVRSLDFGKQIHSQTIKVGFEDS 359
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK-FSKIKQ 158
V N+L+D Y KC +V + F +
Sbjct: 360 TDV------------------------------GNALVDMYMKCSASEVEASRVFGAMVS 389
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
++VSW ++ G GF ++ LL MEM++ +++PN ++LSGVL AC++++ V+
Sbjct: 390 PNVVSWTTLILGLVDHGFVQDCFGLL--MEMVKREVEPNVVTLSGVLRACSKLRHVRRVL 447
Query: 219 AIHGYVLRHHIHLSTACGFVICSC-----------SVFNQLSTRDVVVWNSIISAFVRSG 267
IH Y+LR H+ G + +V + RD + + S+++ F G
Sbjct: 448 EIHAYLLRRHVDGEMVVGNSLVDAYASSRKVDYAWNVIRSMKRRDNITYTSLVTRFNELG 507
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWN 316
+ AL ++ + ++ + +++ + A L AL G + V N
Sbjct: 508 KHEMALSVINYMYGDGIRMDQLSLPGFISASANLGALETGKHLHCYSVKSGFSGAASVLN 567
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+L+DMY +CG+++ ++K+F + ++VSWN ++S
Sbjct: 568 SLVDMYSKCGSLEDAKKVFEEIATPDVVSWNGLVS 602
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 86/341 (25%), Positives = 149/341 (43%), Gaps = 56/341 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT M+ + + ++LF M+ G P+ F V ++C+ L+D G V+ +I
Sbjct: 92 WTVMISAFTKSQEFASALSLFEEMMASGTHPNEFTFSSVVRSCAGLRDISYGGRVHGSVI 151
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
FEGN+ V L DL+ KCG+ F C
Sbjct: 152 KTGFEGNSVVGSSLSDLYSKCGQ-----------------------FKEACEL------- 181
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
FS ++ D +SW M++ +L G R+ L EM++ + PN + +L A + +
Sbjct: 182 FSSLQNADTISWTMMIS--SLVGARKWREALQFYSEMVKAGVPPNEFTFVKLLGASSFL- 238
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVIC-----------SCSVFNQLSTRDVVVWNSIIS 261
G++ GK IH ++ I L+ + + V N +DV +W S++S
Sbjct: 239 GLEFGKTIHSNIIVRGIPLNVVLKTSLVDFYSQFSKMEDAVRVLNSSGEQDVFLWTSVVS 298
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGT 310
FVR+ + +A+ ++ ++PN T ++L C + +L G
Sbjct: 299 GFVRNLRAKEAVGTFLEMRSLGLQPNNFTYSAILSLCSAVRSLDFGKQIHSQTIKVGFED 358
Query: 311 GSFVWNALIDMYGRCGAIQ-KSRKIFVLMPHKNLVSWNVMI 350
+ V NAL+DMY +C A + ++ ++F M N+VSW +I
Sbjct: 359 STDVGNALVDMYMKCSASEVEASRVFGAMVSPNVVSWTTLI 399
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 87/394 (22%), Positives = 162/394 (41%), Gaps = 77/394 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G +VH +I G E + +GS L +++ +WT M+
Sbjct: 143 GGRVHGSVIKTGFEGNSVVGSSLSDLYSKCGQFKEACELFSSLQNADTISWTMMISSLVG 202
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+ E + + M+ GV P+ F K+ A S L GK ++ +I N +
Sbjct: 203 ARKWREALQFYSEMVKAGVPPNEFTFVKLLGASSFL-GLEFGKTIHSNIIVRGIPLNVVL 261
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
K L+D + + +ME D ++N+S ++D+
Sbjct: 262 KTSLVDFYSQFSKME---------DAVRVLNSS---------------------GEQDVF 291
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
W ++++G+ +E +EM +QPN + S +L+ C+ V+ + GK IH
Sbjct: 292 LWTSVVSGFVRNLRAKEAVGTF--LEMRSLGLQPNNFTYSAILSLCSAVRSLDFGKQIHS 349
Query: 223 YVLRHHIHLSTACG------FVICSCS------VFNQLSTRDVVVWNSIISAFVRSGQVV 270
++ ST G ++ CS S VF + + +VV W ++I V G V
Sbjct: 350 QTIKVGFEDSTDVGNALVDMYMKCSASEVEASRVFGAMVSPNVVSWTTLILGLVDHGFVQ 409
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------VWNALI 319
D LL +++ V+PN VT+ VL AC KL + + L ++ V N+L+
Sbjct: 410 DCFGLLMEMVKREVEPNVVTLSGVLRACSKLRHVRRVLEIHAYLLRRHVDGEMVVGNSLV 469
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
D Y + + + M ++ +++ +++ +
Sbjct: 470 DAYASSRKVDYAWNVIRSMKRRDNITYTSLVTRF 503
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/331 (20%), Positives = 145/331 (43%), Gaps = 65/331 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF----------------------CNWTSMMG 38
++ G Q+H+ I G E +G+ L++++ +WT+++
Sbjct: 341 LDFGKQIHSQTIKVGFEDSTDVGNALVDMYMKCSASEVEASRVFGAMVSPNVVSWTTLIL 400
Query: 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
G+ ++ L M+ + V P+ V +ACS+L+ R +++ Y+
Sbjct: 401 GLVDHGFVQDCFGLLMEMVKREVEPNVVTLSGVLRACSKLRHVRRVLEIHAYL------- 453
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
L +D + +V NSL+D YA R + + +K+
Sbjct: 454 -----------------------LRRHVDGEMVVGNSLVDAYASSRKVDYAWNVIRSMKR 490
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+D +++ +++ + G E ++++ M ++ + +SL G ++A A + ++ GK
Sbjct: 491 RDNITYTSLVTRFNELGKHEMALSVINYM--YGDGIRMDQLSLPGFISASANLGALETGK 548
Query: 219 AIHGY-----------VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
+H Y VL + + + CG + + VF +++T DVV WN ++S +G
Sbjct: 549 HLHCYSVKSGFSGAASVLNSLVDMYSKCGSLEDAKKVFEEIATPDVVSWNGLVSGLASNG 608
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ AL ++ + +P++VT + +L AC
Sbjct: 609 FISSALSAFEEMRMKETEPDSVTFLILLSAC 639
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/379 (21%), Positives = 152/379 (40%), Gaps = 103/379 (27%)
Query: 5 IQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNVL 43
+++HA+L+ V+ +G+ L++ + + +TS++ +N L
Sbjct: 447 LEIHAYLLRRHVDGEMVVGNSLVDAYASSRKVDYAWNVIRSMKRRDNITYTSLVTRFNEL 506
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G +E +++ M G+R D P A + L GK ++ Y + F G A V
Sbjct: 507 GKHEMALSVINYMYGDGIRMDQLSLPGFISASANLGALETGKHLHCYSVKSGFSGAASVL 566
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
NSL+D Y+KC L+ + F +I D+VS
Sbjct: 567 ------------------------------NSLVDMYSKCGSLEDAKKVFEEIATPDVVS 596
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG------ 217
WN +++G A GF + +EM M +T +P++++ +L+AC+ + LG
Sbjct: 597 WNGLVSGLASNGFISSALSAFEEMRMKET--EPDSVTFLILLSACSNGRLTDLGLEYFQV 654
Query: 218 -KAIHGY--VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALD 274
K I+ + H++HL G R+G++ +A
Sbjct: 655 MKKIYNIEPQVEHYVHLVGILG----------------------------RAGRLEEATG 686
Query: 275 LLRDVIVANVKPNTVTIVSVLPACLKLAALP-------QGLG---TGSFVWNALIDMYGR 324
++ + ++KPN + ++L AC L +GL + ++ L D+Y
Sbjct: 687 VVETM---HLKPNAMIFKTLLRACRYRGNLSLGEDMANKGLALAPSDPALYILLADLYDE 743
Query: 325 CGAIQKSRKIFVLMPHKNL 343
G + ++K LM K L
Sbjct: 744 SGKPELAQKTRNLMTEKRL 762
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 112/257 (43%), Gaps = 27/257 (10%)
Query: 118 ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFR 177
I GL E +D L NN L+ Y K + + F ++ + + +W M++ +
Sbjct: 50 IKFGLLENLD---LCNN-LLSLYLKTDGIWNARKLFDEMSHRTVFAWTVMISAFTKSQEF 105
Query: 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH------- 230
+L +EM + + PN + S V+ +CA ++ + G +HG V++
Sbjct: 106 ASALSLFEEM--MASGTHPNEFTFSSVVRSCAGLRDISYGGRVHGSVIKTGFEGNSVVGS 163
Query: 231 ----LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286
L + CG +C +F+ L D + W +IS+ V + + +AL +++ A V P
Sbjct: 164 SLSDLYSKCGQFKEACELFSSLQNADTISWTMMISSLVGARKWREALQFYSEMVKAGVPP 223
Query: 287 NTVTIVSVLPACLKLA----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFV 336
N T V +L A L + +G+ + +L+D Y + ++ + ++
Sbjct: 224 NEFTFVKLLGASSFLGLEFGKTIHSNIIVRGIPLNVVLKTSLVDFYSQFSKMEDAVRVLN 283
Query: 337 LMPHKNLVSWNVMISVY 353
+++ W ++S +
Sbjct: 284 SSGEQDVFLWTSVVSGF 300
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 93/346 (26%), Positives = 163/346 (47%), Gaps = 86/346 (24%)
Query: 63 PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGL 122
P+ F P V KA SELK RVG V+ I + F +DL+I
Sbjct: 124 PNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFG---------MDLYIL---------- 164
Query: 123 FEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTN 182
NSL+ FY C L ++ F I KD+VSWN+M++ +A G E+
Sbjct: 165 -----------NSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALE 213
Query: 183 LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS---------- 232
L +ME + ++ PN++++ GVL+ACA+ ++ G+ + Y+ R I +
Sbjct: 214 LFLKME--RENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDM 271
Query: 233 -TACGFVICSCSVFNQLSTRDV-------------------------------VVWNSII 260
T CG V + +F+++ RDV WN +I
Sbjct: 272 YTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLI 331
Query: 261 SAFVRSGQVVDALDLLRDVIVANV-KPNTVTIVSVLPACLKLAALP-----------QGL 308
SA+ ++G+ +AL + ++ ++ + KP+ VT+VS L AC +L A+ +G+
Sbjct: 332 SAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGI 391
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ ++L+DMY +CG+++K+ ++F + +++ W+ MI+ G
Sbjct: 392 VLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLG 437
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 145/288 (50%), Gaps = 13/288 (4%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ + E+ + LF M + V P+ V AC++ D G+ V Y+
Sbjct: 194 SWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYI 253
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSH 150
+ + + +LD++ KCG ++ LF+EM ++D ++D YAK +
Sbjct: 254 ERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAAR 313
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F+ + K++ +WN +++ Y G +E + +E+++ + +P+ ++L L+ACAQ
Sbjct: 314 LVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKI-AKPDEVTLVSTLSACAQ 372
Query: 211 VKGVKLGKAIHGYVLRHHI----HLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ + LG IH Y+ R I HL ++ CG + + VF + RDV VW+++
Sbjct: 373 LGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAM 432
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
I+ G+ A+DL ++ A VKPN+VT +VL AC + +G
Sbjct: 433 IAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEG 480
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 131/267 (49%), Gaps = 34/267 (12%)
Query: 114 GRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYAL 173
RM T F+ L S + ++ Y + F +I Q +L +WN ++ YA
Sbjct: 46 ARMLRTGLFFDPFSASKLFTASALSSFSTLDY---ARNLFDQIPQPNLYTWNTLIRAYAS 102
Query: 174 GG--FREEVT--NLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG------- 222
F+ V +LLD+ E + PN + V+ A +++K ++G A+HG
Sbjct: 103 SSDPFQSFVIFLDLLDKCEDL-----PNKFTFPFVIKAASELKASRVGTAVHGMAIKLSF 157
Query: 223 ----YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRD 278
Y+L + ACG + + +F +S +DVV WNS+ISAF + DAL+L
Sbjct: 158 GMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLK 217
Query: 279 VIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW-----------NALIDMYGRCGA 327
+ NV PN+VT+V VL AC K L G S++ NA++DMY +CG+
Sbjct: 218 MERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGS 277
Query: 328 IQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ ++K+F MP +++ SW +M+ Y
Sbjct: 278 VDDAQKLFDEMPERDVFSWTIMLDGYA 304
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 111/244 (45%), Gaps = 46/244 (18%)
Query: 33 WTSMMGMYNVLGYYEEIVNLF-YLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W ++ Y G +E + +F L + K +PD AC++L +G ++ Y
Sbjct: 327 WNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVY- 385
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
IK EG + + C + +SL+D YAKC L+ +
Sbjct: 386 --IKREG----------IVLNCHLI-----------------SSLVDMYAKCGSLEKALE 416
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++++D+ W+AM+AG + G + +L EM+ + ++PN+++ + VL AC+
Sbjct: 417 VFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQ--EAKVKPNSVTFTNVLCACSHA 474
Query: 212 KGVKLGK-------AIHGYV--LRHH---IHLSTACGFVICSCSVFNQLSTR-DVVVWNS 258
V G+ ++G V ++H+ + + GF+ + + N++ST VW +
Sbjct: 475 GLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGA 534
Query: 259 IISA 262
++ A
Sbjct: 535 LLGA 538
>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 683
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 91/352 (25%), Positives = 166/352 (47%), Gaps = 39/352 (11%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-GVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W M+ Y +E+ +N+F M ++ G+ PD AC+ LK +GK ++ Y
Sbjct: 205 SWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHY 264
Query: 91 MI-SIKFE---GNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRY 145
+ ++KF GNA LLD++ KCG + I +FEEM ++ + +++ YA C
Sbjct: 265 VRDNVKFTPIIGNA-----LLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGE 319
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
L+ + F +D+V W AM+ GY +E L EM++ + ++P+ + +L
Sbjct: 320 LEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRK--VKPDKFIVVSLL 377
Query: 206 AACAQVKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVV 254
CAQ ++ GK IH ++ + I + CGF+ + +F L +D
Sbjct: 378 TGCAQTGAIEQGKWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTA 437
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV 314
W SII +G+ AL+L + A V+P+ +T + VL AC + +G + +
Sbjct: 438 SWTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNSM 497
Query: 315 ------------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ L+D+ GR G + ++ ++ +P +N + + +YG
Sbjct: 498 RMEYQIKPKVEHYGCLVDLLGRAGLLNEAEELIKKIPDENKA---ITVPLYG 546
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 94/360 (26%), Positives = 158/360 (43%), Gaps = 85/360 (23%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G Y+ + LF + + G+ PD+F P V+KA I + G
Sbjct: 116 GNYKRTLVLFSKLREDGLWPDNFTYPFVFKA-------------------IGYLGEVSKA 156
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
L L K G ++ D V NSLID YA+ V F ++ +D++S
Sbjct: 157 EKLRGLVTKTG-----------LEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVIS 205
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
WN M++GY E+ N+ M+ ++ + P+ ++ L+AC +K ++LGK IH Y
Sbjct: 206 WNVMISGYVKCRRFEDAINVFCRMQE-ESGLMPDEATVVSTLSACTALKRLELGKKIHHY 264
Query: 224 VLRHHIHLSTACG------FVICSC-----SVFNQLST---------------------- 250
V R ++ + G + C C +VF ++ +
Sbjct: 265 V-RDNVKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEA 323
Query: 251 ---------RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
RDVV+W ++I+ +V+ + +A+ L R++ + VKP+ +VS+L C +
Sbjct: 324 RELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQT 383
Query: 302 AALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
A+ QG F V ALI+MY +CG I+K+ +IF + K+ SW +I
Sbjct: 384 GAIEQGKWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSII 443
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------ 306
++++N II AF + G L L + + P+ T V A L + +
Sbjct: 102 LLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSKAEKLRG 161
Query: 307 -----GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
GL ++V N+LIDMY + + +F MP ++++SWNVMIS Y
Sbjct: 162 LVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGY 213
>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 89/366 (24%), Positives = 175/366 (47%), Gaps = 29/366 (7%)
Query: 11 LIVCGVELCA--FLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVC 68
L+ CG L A + +W S++ Y G +E +L+Y M + V PD
Sbjct: 200 LVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTM 259
Query: 69 PKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ 128
V A ++L++ +G+ ++ + + + L+D++IKC +E LFE M +
Sbjct: 260 IGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTK 319
Query: 129 DFLVN-NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
+V+ +++ YAK L+ + F+++ +KD+V WNA++ G+ +E L EM
Sbjct: 320 KTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEM 379
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA-----------CG 236
+ + + P+ I++ L+AC+Q+ + +G +H YV +H++ ++ A CG
Sbjct: 380 Q--ASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCG 437
Query: 237 FVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296
+ + VF ++ R+ + W +II GQ A+ ++I + P+ +T + VL
Sbjct: 438 NIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLS 497
Query: 297 ACLKLAALPQGLG-----TGSF-------VWNALIDMYGRCGAIQKSRKIFVLMP-HKNL 343
AC + QG T + ++ L+D+ GR G ++++ ++ MP +
Sbjct: 498 ACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDA 557
Query: 344 VSWNVM 349
V W +
Sbjct: 558 VVWGAL 563
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 82/353 (23%), Positives = 158/353 (44%), Gaps = 86/353 (24%)
Query: 52 LFYLMIDKGVR-PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLF 110
L+ M+ KG PD++ P ++K C+ ++ ++I + F
Sbjct: 141 LYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVIQLGF-------------- 186
Query: 111 IKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAG 170
D D V+N++I C L + F + +DLVSWN+++ G
Sbjct: 187 ----------------DSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIING 230
Query: 171 YALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH 230
Y G +E +L +M + ++ P+ +++ GV++A AQ++ + LG+ +H + ++
Sbjct: 231 YVRCGLADEAFDLY--YKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLN 288
Query: 231 LSTAC------------------------------------------GFVICSCSVFNQL 248
L+ G + + +FN++
Sbjct: 289 LTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEM 348
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
+DVV+WN++I FV++ + +AL L ++ ++V P+ +T+V+ L AC +L AL G+
Sbjct: 349 PEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGI 408
Query: 309 GTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+V AL+DMY +CG I+K+ ++F MP +N ++W +I
Sbjct: 409 WMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAII 461
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 125/284 (44%), Gaps = 40/284 (14%)
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNS-----LIDFYAKCRYLKVSHCK--FSKIK 157
PLL L C M + +M L+++ L+ F A + + +C +
Sbjct: 56 PLLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNNAA 115
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ-----PNTISLSGVLAACAQVK 212
+ SWN + GY E N ++ + + + ++ P+ + + CA
Sbjct: 116 NLNXFSWNMAIRGYV------ESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFS 169
Query: 213 GVKLGKAIHGYVLR---------HH--IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
I G+V++ H+ IH+ +CG ++ + +F++ RD+V WNSII+
Sbjct: 170 LSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIIN 229
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGT 310
+VR G +A DL + NV P+ VT++ V+ A +L L GL
Sbjct: 230 GYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNL 289
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ NAL+DMY +C I+ ++ +F M K +VSW M+ Y
Sbjct: 290 TVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYA 333
>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Glycine max]
Length = 733
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 144/301 (47%), Gaps = 32/301 (10%)
Query: 76 SELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNS 135
SE+ +VG D + + I++K ++ + + G+ T + + D+ V N+
Sbjct: 214 SEMWRSKVGYDSHTFAIALKASADSSL--------LHHGKAIHTQTIKQGFDESSFVINT 265
Query: 136 LIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ 195
L Y KC F K++ D+VSW +++ Y G E M ++ +
Sbjct: 266 LATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMR--KSYVS 323
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSV 244
PN + + V+++CA + K G+ IHG+VLR I L + CG + + V
Sbjct: 324 PNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLV 383
Query: 245 FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL 304
F+ ++ +D++ W++IIS + + G +A D L + KPN + SVL C +A L
Sbjct: 384 FHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALL 443
Query: 305 PQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
Q G+ + V +A+I MY +CG++Q++ KIF M +++SW MI+ Y
Sbjct: 444 EQGKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMINGY 503
Query: 354 G 354
Sbjct: 504 A 504
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/343 (23%), Positives = 151/343 (44%), Gaps = 56/343 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+++ Y +G E V F M V P+ + V +C+ L + G+ ++ ++
Sbjct: 293 SWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHV 352
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + GL + V NS+I Y+KC LK +
Sbjct: 353 LRL--------------------------GLVNALS----VANSIITLYSKCGLLKSASL 382
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F I +KD++SW+ +++ Y+ GG+ +E + L M + +PN +LS VL+ C +
Sbjct: 383 VFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMR--REGPKPNEFALSSVLSVCGSM 440
Query: 212 KGVKLGKAIHGYVL----RHH-------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ GK +H ++L H I + + CG V + +FN + D++ W ++I
Sbjct: 441 ALLEQGKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMI 500
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------L 308
+ + G +A++L + +KP+ V + VL AC + G +
Sbjct: 501 NGYAEHGYSQEAINLFEKISSVGLKPDYVMFIGVLTACNHAGMVDLGFYYFMLMTNVYRI 560
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ LID+ R G + ++ I MP H + V W+ ++
Sbjct: 561 SPSKEHYGCLIDLLCRAGRLSEAEHIIRSMPFHTDDVVWSTLL 603
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/345 (23%), Positives = 154/345 (44%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMY-NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+WT+++ Y N YE ++ + + G + D F+ KAC+ + G+ ++ +
Sbjct: 90 SWTTLIAGYVNASDSYEALILFSNMWVHPGPQRDQFMISVALKACALGVNICFGELLHGF 149
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ + V L+D+++K G++E CR
Sbjct: 150 SVKSGLIHSVFVSSALIDMYMKVGKIE-----------------------QGCRV----- 181
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F K+ +++VSW A++AG G+ E LL EM ++ + ++ + + L A A
Sbjct: 182 --FEKMMTRNVVSWTAIIAGLVHAGYNME--GLLYFSEMWRSKVGYDSHTFAIALKASAD 237
Query: 211 VKGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSI 259
+ GKAIH ++ S+ CG +F ++ DVV W ++
Sbjct: 238 SSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTL 297
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGL 308
IS +V+ G+ A++ + + + V PN T +V+ +C LAA L GL
Sbjct: 298 ISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGL 357
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V N++I +Y +CG ++ + +F + K+++SW+ +ISVY
Sbjct: 358 VNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVY 402
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 103/234 (44%), Gaps = 29/234 (12%)
Query: 142 KCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISL 201
K RY+ F K+ +D +SW ++AGY E L M + Q + +
Sbjct: 75 KARYM------FDKMTHRDEISWTTLIAGYVNASDSYEALILFSNM-WVHPGPQRDQFMI 127
Query: 202 SGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLST 250
S L ACA + G+ +HG+ ++ H + +S+A G + C VF ++ T
Sbjct: 128 SVALKACALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMT 187
Query: 251 RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA-----------CL 299
R+VV W +II+ V +G ++ L ++ + V ++ T L A +
Sbjct: 188 RNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAI 247
Query: 300 KLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ QG SFV N L MY +CG ++F M ++VSW +IS Y
Sbjct: 248 HTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTY 301
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 97/235 (41%), Gaps = 53/235 (22%)
Query: 4 GIQVHAHLIVCGV--------------ELCAFLGSQLL-------EVFCNWTSMMGMYNV 42
G Q+H H++ G+ C L S L + +W++++ +Y+
Sbjct: 345 GEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQ 404
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
GY +E + M +G +P+ F V C + GK V+ +++ I + A V
Sbjct: 405 GGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMV 464
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
++ ++ KCG ++ S +F M K D++
Sbjct: 465 HSAIISMYSKCGSVQEASKIFNGM------------------------------KINDII 494
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
SW AM+ GYA G+ +E NL +++ + ++P+ + GVL AC V LG
Sbjct: 495 SWTAMINGYAEHGYSQEAINLFEKISSV--GLKPDYVMFIGVLTACNHAGMVDLG 547
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 30/152 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G QVHAHL+ G++ A + S ++ ++ +WT+M+
Sbjct: 443 LEQGKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMING 502
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACS-----ELKDYRVGKDVYDYMISI 94
Y GY +E +NLF + G++PD+ + V AC+ +L Y Y IS
Sbjct: 503 YAEHGYSQEAINLFEKISSVGLKPDYVMFIGVLTACNHAGMVDLGFYYFMLMTNVYRISP 562
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126
E C L+DL + GR+ + M
Sbjct: 563 SKEHYGC----LIDLLCRAGRLSEAEHIIRSM 590
>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Glycine max]
Length = 741
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 100/395 (25%), Positives = 178/395 (45%), Gaps = 52/395 (13%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNVLG 44
+VH I CG+ AFLG+ L+ + +WTSM Y G
Sbjct: 153 EVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNCG 212
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
+ +F M GV+P+ + ACSELKD + G+ ++ + + N V
Sbjct: 213 LPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCS 272
Query: 105 PLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK---- 159
L+ L+ +C ++ +F+ M +D + N ++ Y R FS++ K
Sbjct: 273 ALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEA 332
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D +WNA++ G G E+ +L +M+ + +PN I++S L AC+ ++ +++GK
Sbjct: 333 DEATWNAVIGGCMENGQTEKAVEMLRKMQNL--GFKPNQITISSFLPACSILESLRMGKE 390
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H YV RH +++ CG + S +VF+ + +DVV WN++I A G
Sbjct: 391 VHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGN 450
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL------GTGSFV------WN 316
+ L L ++ + +KPN+VT VL C + +GL G V +
Sbjct: 451 GREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYA 510
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMI 350
++D++ R G + ++ + MP + S W ++
Sbjct: 511 CMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALL 545
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 99/374 (26%), Positives = 164/374 (43%), Gaps = 89/374 (23%)
Query: 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS 93
++++ + G E + L+ + +G++P + V V KAC D K+V+D
Sbjct: 101 STLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACGASGDASRVKEVHDDA-- 158
Query: 94 IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKF 153
I+CG M D + N+LI Y KC+ ++ + F
Sbjct: 159 -----------------IRCGMM-----------SDAFLGNALIHAYGKCKCVEGARRVF 190
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG 213
+ KD+VSW +M + Y G L EM ++PN+++LS +L AC+++K
Sbjct: 191 DDLVVKDVVSWTSMSSCYVNCGLPR--LGLAVFCEMGWNGVKPNSVTLSSILPACSELKD 248
Query: 214 VKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISA 262
+K G+AIHG+ +RH + L C V + VF+ + RDVV WN +++A
Sbjct: 249 LKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTA 308
Query: 263 F-----------------------------------VRSGQVVDALDLLRDVIVANVKPN 287
+ + +GQ A+++LR + KPN
Sbjct: 309 YFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPN 368
Query: 288 TVTIVSVLPACLKLAALPQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIFV 336
+TI S LPAC L +L G +V+ AL+ MY +CG + SR +F
Sbjct: 369 QITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFD 428
Query: 337 LMPHKNLVSWNVMI 350
++ K++V+WN MI
Sbjct: 429 MICRKDVVAWNTMI 442
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 103/223 (46%), Gaps = 24/223 (10%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I Q D + + +++ + G E L + ++P+ V AC
Sbjct: 89 FDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLR--ARGIKPHNSVFLTVAKACGASG 146
Query: 213 GVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
K +H +R IH C V + VF+ L +DVV W S+ S
Sbjct: 147 DASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSS 206
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGT 310
+V G L + ++ VKPN+VT+ S+LPAC +L A+ G+
Sbjct: 207 CYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIE 266
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
FV +AL+ +Y RC +++++R +F LMPH+++VSWN +++ Y
Sbjct: 267 NVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAY 309
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC----- 298
+F+ + D +++ISAF G +A+ L + +KP+ ++V AC
Sbjct: 88 LFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACGASGD 147
Query: 299 ------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+ A+ G+ + +F+ NALI YG+C ++ +R++F + K++VSW M S
Sbjct: 148 ASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSC 207
Query: 353 Y 353
Y
Sbjct: 208 Y 208
>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
Length = 601
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 164/342 (47%), Gaps = 56/342 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +++ ++ + ++ + + + GV PD P + KA S+L++ ++ + +
Sbjct: 72 WNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRN----ENPFQFYA 127
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
I +K G +D D V NSL+ +A C Y+ S
Sbjct: 128 HI----------------VKFG-----------LDFDAFVQNSLVSAFAHCGYVDCSRRL 160
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + +KD+VSW A++ G G E +EM + ++ + +++ VL A A ++
Sbjct: 161 FIETAKKDVVSWTALINGCLRNGRAVEALECF--VEMRSSGVEVDEVTIVSVLCAAAMLR 218
Query: 213 GVKLGKAIHG------------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
V G+ +HG YV + + + CG+ + VFN++ TR++V W ++I
Sbjct: 219 DVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALI 278
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
+ +V+ + +AL + +++I+ ++PN T+ S L AC +L +L QG LG
Sbjct: 279 AGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLG 338
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
S + AL+DMY +CG + ++ +F +P K++ W MI+
Sbjct: 339 LNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMIN 380
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/382 (24%), Positives = 164/382 (42%), Gaps = 75/382 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMY 40
E Q +AH++ G++ AF+ + L+ F + WT+++
Sbjct: 120 ENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGC 179
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G E + F M GV D V A + L+D G+ V+ +
Sbjct: 180 LRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGF---------- 229
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
+++ GR+ D V ++L+D Y+KC Y + F+++ ++
Sbjct: 230 ---------YVESGRV----------IWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRN 270
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
LVSW A++AGY +E + EM I ++PN +++ L ACAQ+ + G+ +
Sbjct: 271 LVSWGALIAGYVQCNRYKEALKVFQEM--IIEGIEPNQSTVTSALTACAQLGSLDQGRWL 328
Query: 221 HGYVLRHHIHLSTACGFVI------CSCS-----VFNQLSTRDVVVWNSIISAFVRSGQV 269
H YV R + L++ G + C C VF +L +DV W ++I+ G
Sbjct: 329 HEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDA 388
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNA 317
+ +L+L +I + V+PN VT + VL AC + +GL + +
Sbjct: 389 LSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGC 448
Query: 318 LIDMYGRCGAIQKSRKIFVLMP 339
++D+ GR G ++++ K MP
Sbjct: 449 MVDLLGRAGRLEEAIKFIESMP 470
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 134/285 (47%), Gaps = 39/285 (13%)
Query: 100 ACVKRPLLDLFIKCGRME---------ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
A ++ +L F KCG + ITSGL F +++ L + + L +
Sbjct: 5 ATLRHSILCCFHKCGTFDHLKQTTSILITSGL---AHHTFFLSDIL---RSATKDLGYTL 58
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ + WN ++ G++ + V L+ + + P+ + +L A ++
Sbjct: 59 LLFDRLATPYIFLWNTIIRGFSASSQPQMV--LVAYSRLRNHGVIPDRHTFPLLLKAFSK 116
Query: 211 VKG----------VKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ VK G +V + CG+V CS +F + + +DVV W ++I
Sbjct: 117 LRNENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALI 176
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGSF 313
+ +R+G+ V+AL+ ++ + V+ + VTIVSVL A L + G + +G
Sbjct: 177 NGCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRV 236
Query: 314 VWN-----ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+W+ AL+DMY +CG + K+F MP +NLVSW +I+ Y
Sbjct: 237 IWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGY 281
>gi|357118484|ref|XP_003560984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
mitochondrial-like [Brachypodium distachyon]
Length = 678
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 133/248 (53%), Gaps = 24/248 (9%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D V N+L+D YAK LK + F +I +++VSW +ML+G G +E L +EM
Sbjct: 161 DLFVMNNLVDMYAKGGDLKNARKVFDRIPDRNVVSWTSMLSGCLQNGLAKEGLVLFNEMR 220
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI---HLSTA--------CGF 237
Q + P+ +++ VL AC + + G+ IHG V++H + H TA CG
Sbjct: 221 --QESILPSEYTMASVLMACTMLGSLHQGRLIHGSVMKHGLVSNHFITAAMLDMYVKCGE 278
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ VF++LS D+V+W ++I + ++G +DAL L D + PN+VTI +VL A
Sbjct: 279 AEDARQVFDELSFVDLVLWTTMIVGYTQNGSPLDALLLFVDDKFMRIVPNSVTIATVLSA 338
Query: 298 CLKLAALPQG---------LGT--GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
+L L G LG V NAL+DMY +C A+ ++ IF + +K++V+W
Sbjct: 339 SAQLRNLSLGRSIHGISVKLGAVENDVVMNALVDMYAKCKALSDAKGIFGRVLNKDVVTW 398
Query: 347 NVMISVYG 354
N +I+ Y
Sbjct: 399 NSLIAGYA 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 154/345 (44%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ G +E + LF M + + P + V AC+ L G+ ++ +
Sbjct: 195 SWTSMLSGCLQNGLAKEGLVLFNEMRQESILPSEYTMASVLMACTMLGSLHQGRLIHGSV 254
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ N + +LD+++KC G E+ Q
Sbjct: 255 MKHGLVSNHFITAAMLDMYVKC-------GEAEDARQ----------------------- 284
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ DLV W M+ GY G + L + + ++ + PN+++++ VL+A AQ+
Sbjct: 285 VFDELSFVDLVLWTTMIVGYTQNGSPLDALLLFVDDKFMR--IVPNSVTIATVLSASAQL 342
Query: 212 KGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ + LG++IHG V+ + + C + + +F ++ +DVV WNS+I
Sbjct: 343 RNLSLGRSIHGISVKLGAVENDVVMNALVDMYAKCKALSDAKGIFGRVLNKDVVTWNSLI 402
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLG 309
+ + + DAL L + V P+ +++V+ L AC+ L A+
Sbjct: 403 AGYAENDMGSDALMLFSHMRVQGSLPDAISVVNALSACVCLGDLLIGKCFHTYAVKHAFM 462
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ +V AL+++Y +C + ++++F M +N V+W MI YG
Sbjct: 463 SNIYVNTALLNLYNKCADLPSAQRVFSEMNDRNTVTWGAMIGGYG 507
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 134/279 (48%), Gaps = 47/279 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVR--PDHFVCPKVYKACSELKDYRVGKDVYDY 90
WT+M+ Y G + + LF + DK +R P+ V A ++L++ +G+ ++
Sbjct: 297 WTTMIVGYTQNGSPLDALLLF--VDDKFMRIVPNSVTIATVLSASAQLRNLSLGRSIHG- 353
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ +K G +E + +V N+L+D YAKC+ L +
Sbjct: 354 ------------------ISVKLGAVE-----------NDVVMNALVDMYAKCKALSDAK 384
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ KD+V+WN+++AGYA + L M +Q + P+ IS+ L+AC
Sbjct: 385 GIFGRVLNKDVVTWNSLIAGYAENDMGSDALMLFSHMR-VQGSL-PDAISVVNALSACVC 442
Query: 211 VKGVKLGKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ + +GK H Y ++H +I+++TA C + + VF++++ R+ V W ++
Sbjct: 443 LGDLLIGKCFHTYAVKHAFMSNIYVNTALLNLYNKCADLPSAQRVFSEMNDRNTVTWGAM 502
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
I + G ++DL +++ N++PN S+L C
Sbjct: 503 IGGYGMQGDSAGSIDLFNEMLKDNIQPNEAVFTSILSTC 541
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 82/199 (41%), Gaps = 25/199 (12%)
Query: 176 FREEVTNLLDEMEMIQTDMQPNTISL-SGVLAACAQVKGVKLGKA---IHGYV--LRHHI 229
FR T ++ + P+ L +L AC + ++ A HG + LR H
Sbjct: 5 FRPSATPDAHSVDHLPRASSPDANPLLHRLLPACTTLPSLRALHARLLAHGLLRGLRAHT 64
Query: 230 HLST---ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286
L + A G + + V ++ D + + +G+ +A+ + RD+ P
Sbjct: 65 KLLSCYAALGDLASARRVLDETPHPDAYTYKVALGWHAAAGRHAEAVAVHRDM--RRRCP 122
Query: 287 NTVTIVSVLPACLKLAALPQGLGTGS--------------FVWNALIDMYGRCGAIQKSR 332
V VL LK A G G FV N L+DMY + G ++ +R
Sbjct: 123 AEQEDVVVLSLALKAAVRSADFGYGRRLHCDVVKAGGGDLFVMNNLVDMYAKGGDLKNAR 182
Query: 333 KIFVLMPHKNLVSWNVMIS 351
K+F +P +N+VSW M+S
Sbjct: 183 KVFDRIPDRNVVSWTSMLS 201
>gi|449523774|ref|XP_004168898.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g14850-like [Cucumis sativus]
Length = 606
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 166/346 (47%), Gaps = 56/346 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WT+++ G + + F M+ VRP+ F P V KA + L+ GK ++
Sbjct: 75 TWTALIAGSVQNGCFVSALLHFSDMLSDCVRPNDFTFPCVLKASTGLRMDTTGKQLHAL- 133
Query: 92 ISIKFEGNACVKRPLL-DLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
VK L+ D+F+ C S+ D Y+K +L ++
Sbjct: 134 ---------AVKEGLINDVFVGC---------------------SVFDMYSKLGFLNDAY 163
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ ++L +WNA ++ L G E+ +++ +E+++ +P++I+ L AC+
Sbjct: 164 KVFDEMPHRNLETWNAYISNSVLHGRPED--SVIAFIELLRVGGKPDSITFCXFLNACSD 221
Query: 211 VKGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
G+ G +HG+++R ++ +S CG V CS VF+++ R+ V W+S+
Sbjct: 222 KLGLGPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSL 281
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS------- 312
I+A+V++ + A L +++P + SVL AC L+ + G +
Sbjct: 282 IAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACV 341
Query: 313 ----FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
FV +AL+DMYG+CG+I + + F MP +NLVSWN ++ Y
Sbjct: 342 EQNIFVASALVDMYGKCGSIDNAEQAFNAMPERNLVSWNALLGGYA 387
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 120/248 (48%), Gaps = 27/248 (10%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
Q+ V+N LIDFY KC ++ S F ++ +++ VSW++++A Y E+ + L +
Sbjct: 242 QNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLF--L 299
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTA-------CG 236
+ D++P +S VL ACA + ++ G+++ ++ +I +++A CG
Sbjct: 300 RARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCG 359
Query: 237 FVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVL 295
+ + FN + R++V WN+++ + G A+ LL ++ A + P+ V+++ L
Sbjct: 360 SIDNAEQAFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICAL 419
Query: 296 PACLKLAALPQGLG------------TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
AC + L G+ G + L+D+ GR G ++ + MP
Sbjct: 420 SACSRAGDLKTGMKIFESMKERYGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPFPPT 479
Query: 344 VS-WNVMI 350
+S W ++
Sbjct: 480 ISIWGALL 487
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 113/242 (46%), Gaps = 24/242 (9%)
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
N L++ YAK +L + + +V+W A++AG G V+ LL +M+
Sbjct: 46 NHLVNMYAKLDHLNSAKLILELAPCRSVVTWTALIAGSVQNGCF--VSALLHFSDMLSDC 103
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSC 242
++PN + VL A ++ GK +H ++ + + + GF+ +
Sbjct: 104 VRPNDFTFPCVLKASTGLRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAY 163
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL-KL 301
VF+++ R++ WN+ IS V G+ D++ +++ KP+++T L AC KL
Sbjct: 164 KVFDEMPHRNLETWNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCXFLNACSDKL 223
Query: 302 AALP----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
P G G V N LID YG+CG ++ S +F M +N VSW+ +I+
Sbjct: 224 GLGPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIA 283
Query: 352 VY 353
Y
Sbjct: 284 AY 285
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 31/189 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W+S++ Y E+ LF + + P F+ V AC+ L + G+ V
Sbjct: 277 SWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALA 336
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ ACV +Q+ V ++L+D Y KC + +
Sbjct: 337 V------KACV------------------------EQNIFVASALVDMYGKCGSIDNAEQ 366
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ + +++LVSWNA+L GYA G + LL+EM + P+ +SL L+AC++
Sbjct: 367 AFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTS-AAGIVPSYVSLICALSACSRA 425
Query: 212 KGVKLGKAI 220
+K G I
Sbjct: 426 GDLKTGMKI 434
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 23/175 (13%)
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYVLR------------HHIHLSTACGFVICSCSVFNQ 247
SL+ V+ V+ LG+A H +L+ H +++ + + +
Sbjct: 8 SLASVVELAVSVRSSLLGRAAHAQILKTLKTPFPAFLYNHLVNMYAKLDHLNSAKLILEL 67
Query: 248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA----- 302
R VV W ++I+ V++G V AL D++ V+PN T VL A L
Sbjct: 68 APCRSVVTWTALIAGSVQNGCFVSALLHFSDMLSDCVRPNDFTFPCVLKASTGLRMDTTG 127
Query: 303 ------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
A+ +GL FV ++ DMY + G + + K+F MPH+NL +WN IS
Sbjct: 128 KQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAYIS 182
>gi|255570475|ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534500|gb|EEF36200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 491
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 165/345 (47%), Gaps = 27/345 (7%)
Query: 21 FLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD 80
FLG + F W +++ + + + LF M+ P+++ ++KAC++L +
Sbjct: 68 FLGLRHRSTFI-WNTVIRAFAEKNEPRKAIMLFKNMLYSNFLPNNYTYSFLFKACTDLNN 126
Query: 81 YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFE-EMDQDFLVNNSLIDF 139
+G + I + +E V+ L+ +F G M+ LF+ ++D + +LI+
Sbjct: 127 LYLGLACHCQSIKLGWEFYDFVQNGLVHMFAIFGCMDSARKLFDLSSNRDVITWTALING 186
Query: 140 YAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI 199
Y + + + F K+ +++ VSW+AM+ GY GF EE L + M + + PN
Sbjct: 187 YVRAGQVLIGRELFDKMPERNSVSWSAMITGYVRVGFFEEALELFNAM--LISGFWPNHA 244
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQL 248
+ + ACA + + G+ IH Y+ R+ + L CG + +CS+F +L
Sbjct: 245 GIVCAINACASLGALDQGRWIHCYIKRNRMDLDRVMGAALIDMYAKCGCIEIACSIFGEL 304
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
RDV V+ +IS GQ A++L + V PN VT VSVL AC ++ + +GL
Sbjct: 305 RNRDVHVYTCLISGLANHGQSATAVELFERMHSEGVVPNEVTFVSVLNACSRMGLVDKGL 364
Query: 309 ----------GTGSFV--WNALIDMYGRCGAIQKSRKIFVLMPHK 341
G V + L+D+ GR G +++++K+ MP K
Sbjct: 365 RIFENMSKIYGDEPQVQHYGCLVDLLGRAGKLEEAKKLVKEMPMK 409
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 121/293 (41%), Gaps = 67/293 (22%)
Query: 124 EEMDQDFLVNNSLIDFYAKCR---YLKVSHCKFS---------KIKQKDLVSWNAMLAGY 171
+++ V+ +L D YA + + +S +FS ++ + WN ++ +
Sbjct: 27 KQIQTHLTVSGTLKDPYAAAKIISFCALSSNQFSLSHAYRLFLGLRHRSTFIWNTVIRAF 86
Query: 172 ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV-----------KGVKLGKAI 220
A + L M + ++ PN + S + AC + + +KLG
Sbjct: 87 AEKNEPRKAIMLFKNM--LYSNFLPNNYTYSFLFKACTDLNNLYLGLACHCQSIKLGWEF 144
Query: 221 HGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV---------- 270
+ +V +H+ G + + +F+ S RDV+ W ++I+ +VR+GQV+
Sbjct: 145 YDFVQNGLVHMFAIFGCMDSARKLFDLSSNRDVITWTALINGYVRAGQVLIGRELFDKMP 204
Query: 271 ---------------------DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG 309
+AL+L ++++ PN IV + AC L AL QG
Sbjct: 205 ERNSVSWSAMITGYVRVGFFEEALELFNAMLISGFWPNHAGIVCAINACASLGALDQGRW 264
Query: 310 TGSFVWN-----------ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
++ ALIDMY +CG I+ + IF + ++++ + +IS
Sbjct: 265 IHCYIKRNRMDLDRVMGAALIDMYAKCGCIEIACSIFGELRNRDVHVYTCLIS 317
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 11/121 (9%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
+F L R +WN++I AF + A+ L ++++ +N PN T + AC L
Sbjct: 67 LFLGLRHRSTFIWNTVIRAFAEKNEPRKAIMLFKNMLYSNFLPNNYTYSFLFKACTDLNN 126
Query: 304 LPQGLGTG-----------SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
L GL FV N L+ M+ G + +RK+F L ++++++W +I+
Sbjct: 127 LYLGLACHCQSIKLGWEFYDFVQNGLVHMFAIFGCMDSARKLFDLSSNRDVITWTALING 186
Query: 353 Y 353
Y
Sbjct: 187 Y 187
>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 89/366 (24%), Positives = 175/366 (47%), Gaps = 29/366 (7%)
Query: 11 LIVCGVELCA--FLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVC 68
L+ CG L A + +W S++ Y G +E +L+Y M + V PD
Sbjct: 200 LVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTM 259
Query: 69 PKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ 128
V A ++L++ +G+ ++ + + + L+D++IKC +E LFE M +
Sbjct: 260 IGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTK 319
Query: 129 DFLVN-NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
+V+ +++ YAK L+ + F+++ +KD+V WNA++ G+ +E L EM
Sbjct: 320 KTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEM 379
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA-----------CG 236
+ + + P+ I++ L+AC+Q+ + +G +H YV +H++ ++ A CG
Sbjct: 380 Q--ASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCG 437
Query: 237 FVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296
+ + VF ++ R+ + W +II GQ A+ ++I + P+ +T + VL
Sbjct: 438 NIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLS 497
Query: 297 ACLKLAALPQGLG-----TGSF-------VWNALIDMYGRCGAIQKSRKIFVLMP-HKNL 343
AC + QG T + ++ L+D+ GR G ++++ ++ MP +
Sbjct: 498 ACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDA 557
Query: 344 VSWNVM 349
V W +
Sbjct: 558 VVWGAL 563
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 82/353 (23%), Positives = 158/353 (44%), Gaps = 86/353 (24%)
Query: 52 LFYLMIDKGVR-PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLF 110
L+ M+ KG PD++ P ++K C+ ++ ++I + F
Sbjct: 141 LYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVIQLGF-------------- 186
Query: 111 IKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAG 170
D D V+N++I C L + F + +DLVSWN+++ G
Sbjct: 187 ----------------DSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIING 230
Query: 171 YALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH 230
Y G +E +L +M + ++ P+ +++ GV++A AQ++ + LG+ +H + ++
Sbjct: 231 YVRCGLADEAFDLY--YKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLN 288
Query: 231 LSTAC------------------------------------------GFVICSCSVFNQL 248
L+ G + + +FN++
Sbjct: 289 LTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEM 348
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
+DVV+WN++I FV++ + +AL L ++ ++V P+ +T+V+ L AC +L AL G+
Sbjct: 349 PEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGI 408
Query: 309 GTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+V AL+DMY +CG I+K+ ++F MP +N ++W +I
Sbjct: 409 WMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAII 461
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 126/284 (44%), Gaps = 40/284 (14%)
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNS-----LIDFYAKCRYLKVSHCK--FSKIK 157
PLL L C M + +M L+++ L+ F A + + +C +
Sbjct: 56 PLLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNNAA 115
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ-----PNTISLSGVLAACAQVK 212
++ SWN + GY E N ++ + + + ++ P+ + + CA
Sbjct: 116 NLNVFSWNMAIRGYV------ESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFS 169
Query: 213 GVKLGKAIHGYVLR---------HH--IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
I G+V++ H+ IH+ +CG ++ + +F++ RD+V WNSII+
Sbjct: 170 LSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIIN 229
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGT 310
+VR G +A DL + NV P+ VT++ V+ A +L L GL
Sbjct: 230 GYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNL 289
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ NAL+DMY +C I+ ++ +F M K +VSW M+ Y
Sbjct: 290 TVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYA 333
>gi|224088613|ref|XP_002308496.1| predicted protein [Populus trichocarpa]
gi|222854472|gb|EEE92019.1| predicted protein [Populus trichocarpa]
Length = 621
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 165/344 (47%), Gaps = 28/344 (8%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W SM+ Y G+++E L+ M G +P+ V +AC + +D G +V+ Y+
Sbjct: 193 WNSMIAGYAQAGFFKECKELYREMGALPGFKPNAVTVLSVLQACMQSQDLVFGMEVHRYI 252
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSH 150
+ K E + V L+ L+ KCG ++ LF+EM ++D + ++I Y +
Sbjct: 253 VDNKVELDVLVCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGYMAHGVVDKGM 312
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++K + L +WNA+++G E V +L+ EM+ + +PN ++LS VL +
Sbjct: 313 ELFREMKSRVLSTWNAVISGLVQNNRHEGVVDLVREMQGL--GFRPNAVTLSSVLPTLSY 370
Query: 211 VKGVKLGKAIHGYVLRH----HIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNSI 259
+K GK IHGY +++ +I+++TA GF+ + VF+Q R +++W +I
Sbjct: 371 FSNLKGGKEIHGYAVKNGYDRNIYVATAIIDTYAKLGFLFGAQYVFDQSKERSLIIWTAI 430
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------G 307
ISA G AL +++ ++P+ VT +VL AC + + G
Sbjct: 431 ISAHAAHGDANSALTFFDEMLSNGIQPDHVTFTAVLAACAHCGMVDKAWEIFNSMSKKYG 490
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ + ++ + GR G + ++ + MP N W ++
Sbjct: 491 IQPLGEHYACMVGVLGRAGRLSQATEFISTMPIEPNAKVWGALL 534
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 130/280 (46%), Gaps = 54/280 (19%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
+D V N+LI FY+KC + + F K++++D+V+WN+M+AGYA GF +E L EM
Sbjct: 157 EDVFVENALISFYSKCLGVGFARKLFDKMRERDVVTWNSMIAGYAQAGFFKECKELYREM 216
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS-----------TACG 236
+ +PN +++ VL AC Q + + G +H Y++ + + L CG
Sbjct: 217 GAL-PGFKPNAVTVLSVLQACMQSQDLVFGMEVHRYIVDNKVELDVLVCNALIGLYAKCG 275
Query: 237 FVICSCSVFNQLSTRDVV-------------------------------VWNSIISAFVR 265
+ + +F+++S +D V WN++IS V+
Sbjct: 276 SLDYARELFDEMSEKDEVTYGAIISGYMAHGVVDKGMELFREMKSRVLSTWNAVISGLVQ 335
Query: 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFV 314
+ + +DL+R++ +PN VT+ SVLP + A+ G +V
Sbjct: 336 NNRHEGVVDLVREMQGLGFRPNAVTLSSVLPTLSYFSNLKGGKEIHGYAVKNGYDRNIYV 395
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
A+ID Y + G + ++ +F ++L+ W +IS +
Sbjct: 396 ATAIIDTYAKLGFLFGAQYVFDQSKERSLIIWTAIISAHA 435
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 128/252 (50%), Gaps = 27/252 (10%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D + LI+ Y+K +++ + F +I K+ S+NA+L Y + +E NL +
Sbjct: 51 DNYLGARLINLYSKTKHIHHARHVFDQIPHKNTFSYNALLIAYTMNNHHKETINLFSSLL 110
Query: 189 MIQTDM-QPNTISLS---GVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLST 233
+ + QPN S++ L++ V V LGK IH +VLR I +
Sbjct: 111 LSSSGDLQPNNYSITCLLKSLSSLLMVTDVCLGKEIHCFVLRRGLVEDVFVENALISFYS 170
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV-IVANVKPNTVTIV 292
C V + +F+++ RDVV WNS+I+ + ++G + +L R++ + KPN VT++
Sbjct: 171 KCLGVGFARKLFDKMRERDVVTWNSMIAGYAQAGFFKECKELYREMGALPGFKPNAVTVL 230
Query: 293 SVLPACLKLAALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMPHK 341
SVL AC++ L G+ + V NALI +Y +CG++ +R++F M K
Sbjct: 231 SVLQACMQSQDLVFGMEVHRYIVDNKVELDVLVCNALIGLYAKCGSLDYARELFDEMSEK 290
Query: 342 NLVSWNVMISVY 353
+ V++ +IS Y
Sbjct: 291 DEVTYGAIISGY 302
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/319 (20%), Positives = 126/319 (39%), Gaps = 72/319 (22%)
Query: 9 AHLIV-CGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFV 67
AH +V G+EL + S++L W +++ +E +V+L M G RP+
Sbjct: 304 AHGVVDKGMELFREMKSRVLST---WNAVISGLVQNNRHEGVVDLVREMQGLGFRPNAVT 360
Query: 68 CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD 127
V S + + GK+++ Y + + D
Sbjct: 361 LSSVLPTLSYFSNLKGGKEIHGYAVKNGY------------------------------D 390
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
++ V ++ID YAK +L + F + K++ L+ W A+++ +A G D
Sbjct: 391 RNIYVATAIIDTYAKLGFLFGAQYVFDQSKERSLIIWTAIISAHAAHGDANSALTFFD-- 448
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQ 247
EM+ +QP+ ++ + VLAACA CG V + +FN
Sbjct: 449 EMLSNGIQPDHVTFTAVLAACAH------------------------CGMVDKAWEIFNS 484
Query: 248 LSTRDVVV-----WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
+S + + + ++ R+G++ A + + + ++PN V A L A
Sbjct: 485 MSKKYGIQPLGEHYACMVGVLGRAGRLSQATEFISTM---PIEPN----AKVWGALLHGA 537
Query: 303 ALPQGLGTGSFVWNALIDM 321
+L + G F + L ++
Sbjct: 538 SLCVDVELGKFACDHLFEI 556
>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
Length = 745
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 161/341 (47%), Gaps = 54/341 (15%)
Query: 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS 93
T+M+G Y G + ++ ++ M +G+ PD F + ACS GK ++ +++
Sbjct: 139 TAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGACSSPDFLLDGKHIHKHILE 198
Query: 94 IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKF 153
K GN V+ N+LI YAKC LK S F
Sbjct: 199 SKHFGNISVR------------------------------NALITMYAKCGSLKDSKSLF 228
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG 213
+ KD+VSWNAM+A Y L G ++ +L M + P+ + S +L ACA K
Sbjct: 229 LTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTL--GHTPDIYTFSSILGACASPKR 286
Query: 214 VKLGKAIH----------GYVLRHH-IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISA 262
++ G+ +H + ++++ I + T CG + + F + +++ WN++++A
Sbjct: 287 LEDGRMLHVRITARGFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGAWNTMLAA 346
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTG 311
+ + + DAL L +++++ P+ T SV+ +C L AL + G
Sbjct: 347 YAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGFEKD 406
Query: 312 SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+ AL++MY +CG++ ++K F + +K++VSW+ MI+
Sbjct: 407 VILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAA 447
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 145/346 (41%), Gaps = 55/346 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W+ ++ Y Y+E + ++ M+ K + D + V AC++L D G+ V
Sbjct: 35 SWSILVECYVQNAMYQEALEVYKEMVRKEISIDAYTLSSVLAACTKLLDVEEGRMVQRKA 94
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ FE +D +V SLI +AKC L+ +
Sbjct: 95 EELGFE------------------------------KDVVVATSLIHLFAKCGCLEEAES 124
Query: 152 KFSKI-KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + +D++S AM+ Y G + + +M ++P+ + + +L AC+
Sbjct: 125 VFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTY--WKMRSQGLEPDAFTYAAILGACSS 182
Query: 211 VKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ GK IH ++L I + CG + S S+F + +DVV WN++
Sbjct: 183 PDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSWNAM 242
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQGL 308
I+A+ G DA L + P+ T S+L AC L + +G
Sbjct: 243 IAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITARGF 302
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ N LI M+ RCG+++ +R+ F + K L +WN M++ Y
Sbjct: 303 DRDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYA 348
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 126/248 (50%), Gaps = 25/248 (10%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D + N +I Y KC+ + + F +IKQ++ SW+ ++ Y +E + EM
Sbjct: 1 DTFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEM- 59
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH------GY-----VLRHHIHLSTACGF 237
++ ++ + +LS VLAAC ++ V+ G+ + G+ V IHL CG
Sbjct: 60 -VRKEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGC 118
Query: 238 VICSCSVFNQL-STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296
+ + SVF + + RD++ ++I A+VR G+ ALD + ++P+ T ++L
Sbjct: 119 LEEAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILG 178
Query: 297 ACLKLAALPQG-------LGTGSF----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
AC L G L + F V NALI MY +CG+++ S+ +F+ M K++VS
Sbjct: 179 ACSSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVS 238
Query: 346 WNVMISVY 353
WN MI+ Y
Sbjct: 239 WNAMIAAY 246
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 84/349 (24%), Positives = 151/349 (43%), Gaps = 63/349 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y + G+ ++ +LF+ M G PD + + AC+ K G+ ++ +
Sbjct: 238 SWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRI 297
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F+ + ++ L+ +F +CG +E RY
Sbjct: 298 TARGFDRDFAMQNNLISMFTRCGSLESAR-----------------------RY------ 328
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F I++K+L +WN MLA YA F + L M+ P+ + S V+ +CA +
Sbjct: 329 -FYSIEKKELGAWNTMLAAYAQ--FDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASL 385
Query: 212 KGVKLGKAIH--------------GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWN 257
++ GK IH G L +++ CG + + F+ +S +DVV W+
Sbjct: 386 GALREGKFIHECSTSCGFEKDVILGTAL---VNMYAKCGSLADAKKSFDGISNKDVVSWS 442
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK----------LAALPQG 307
++I+A + G +AL+L + + + N VT SVL AC L Q
Sbjct: 443 AMIAASAQHGHAEEALELSHLMNLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQD 502
Query: 308 LGTGSFVWN--ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G N ID+ GR G ++++ + MP K VS+ ++++ G
Sbjct: 503 FGIERDEENTVGFIDLLGRAGWLKEAEHVLHTMPFK--VSFVALVTLLG 549
>gi|108711657|gb|ABF99452.1| Calreticulin family protein, expressed [Oryza sativa Japonica
Group]
Length = 1111
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 90/333 (27%), Positives = 152/333 (45%), Gaps = 60/333 (18%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W++M+G Y + G Y +++ L M+++GV PD F+ ++ +AC+ +D +G+ ++ I
Sbjct: 116 WSAMIGAYAIRGMYSDVLALAVTMVEEGVLPDRFLITRILQACAYAEDLELGRALHSMAI 175
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F G +D V NS++ YAKC L +
Sbjct: 176 RRGFMGRV---------------------------KDVPVGNSVLVMYAKCGDLGWARKV 208
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F K+ +DL +WN+M+ GY EE +LLD M Q QP ++ + ++++ A+
Sbjct: 209 FDKMVCRDLGTWNSMIFGYCRSAEWEEARHLLDSMR--QEGTQPGVVTWNTLISSYARFG 266
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
+ + + G + + DVV W S++S FV + +A
Sbjct: 267 DLDVAMELLGQMEESGV--------------------APDVVTWTSLVSGFVHMDRSDEA 306
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGS----FVWNALIDM 321
L + +A V+PN ++I + AC L L Q + GS N+L+DM
Sbjct: 307 LRCFIRMRLAGVEPNGMSIACAISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDM 366
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
Y +CG I + +IF +P K++ SWN MIS Y
Sbjct: 367 YAKCGEIVAAWRIFSGIPDKDIFSWNSMISGYA 399
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 87/382 (22%), Positives = 161/382 (42%), Gaps = 62/382 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WTS++ + + +E + F M GV P+ AC+ LK K+++ + I
Sbjct: 290 WTSLVSGFVHMDRSDEALRCFIRMRLAGVEPNGMSIACAISACASLKLLNQAKELHSHAI 349
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHC 151
+ N L+D++ KCG + +F + D+D NS+I YA+ Y ++
Sbjct: 350 KVGSVNNVLSGNSLVDMYAKCGEIVAAWRIFSGIPDKDIFSWNSMISGYAQAGYCGKAYE 409
Query: 152 KFSKIK----QKDLVSWNAMLAGYALGGFREEVTNLLDEME------------------- 188
F K++ ++++++WN M++GY G E L ME
Sbjct: 410 LFCKMENYGVRRNVITWNTMISGYIRNGDDERAFELFQMMESHGVKRDTATWNILIAGSV 469
Query: 189 ---------MIQTDMQ-----PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS-- 232
I MQ P+ I++ ++ A + + IH + H++ L
Sbjct: 470 HNGYYDRAIRIFRQMQALLRRPDYITILSIIPAFTNLVASWKVREIHACIFHHNLELDGK 529
Query: 233 ---------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283
+ G + +C+VF+ S+R+++ WN II A V G +ALDL +
Sbjct: 530 IANALINAYSKSGNLASACAVFDMHSSRNIISWNCIILAHVLHGSPNEALDLFCQMKQEG 589
Query: 284 VKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN------------ALIDMYGRCGAIQKS 331
V P+ T+V+V+ A + +G T + N A++D+ GR G ++++
Sbjct: 590 VVPDHTTLVTVIKAYGLTGKVSEGSQTFFNMANDYNITPELDHYAAMVDLLGRSGRLKEA 649
Query: 332 RKIFVLMPH-KNLVSWNVMISV 352
++ MP N W+ ++
Sbjct: 650 YELIDEMPLIPNSTVWDTFLTA 671
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 105/242 (43%), Gaps = 44/242 (18%)
Query: 130 FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
F+ LI ++ L + F + ++DL++W+AM+ YA+ G +V L + M
Sbjct: 82 FVAETKLITVHSCAGRLGDAREVFDGMGRRDLLAWSAMIGAYAIRGMYSDVLALA--VTM 139
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH--------------LSTAC 235
++ + P+ ++ +L ACA + ++LG+A+H +R + C
Sbjct: 140 VEEGVLPDRFLITRILQACAYAEDLELGRALHSMAIRRGFMGRVKDVPVGNSVLVMYAKC 199
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
G + + VF+++ RD+ WNS+I + RS + +A LL + +P VT
Sbjct: 200 GDLGWARKVFDKMVCRDLGTWNSMIFGYCRSAEWEEARHLLDSMRQEGTQPGVVT----- 254
Query: 296 PACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK----NLVSWNVMIS 351
WN LI Y R G + + ++ M ++V+W ++S
Sbjct: 255 -------------------WNTLISSYARFGDLDVAMELLGQMEESGVAPDVVTWTSLVS 295
Query: 352 VY 353
+
Sbjct: 296 GF 297
>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
[Vitis vinifera]
gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
Length = 601
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 164/342 (47%), Gaps = 56/342 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +++ ++ + ++ + + + GV PD P + KA S+L++ ++ + +
Sbjct: 72 WNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRN----ENPFQFYA 127
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
I +K G +D D V NSL+ +A C Y+ S
Sbjct: 128 HI----------------VKFG-----------LDFDAFVQNSLVSAFAHCGYVDCSRRL 160
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + +KD+VSW A++ G G E +EM + ++ + +++ VL A A ++
Sbjct: 161 FIETAKKDVVSWTALINGCLRNGRAVEALECF--VEMRSSGVEVDEVTVVSVLCAAAMLR 218
Query: 213 GVKLGKAIHG------------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
V G+ +HG YV + + + CG+ + VFN++ TR++V W ++I
Sbjct: 219 DVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALI 278
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
+ +V+ + +AL + +++I+ ++PN T+ S L AC +L +L QG LG
Sbjct: 279 AGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLG 338
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
S + AL+DMY +CG + ++ +F +P K++ W MI+
Sbjct: 339 LNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMIN 380
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/382 (24%), Positives = 164/382 (42%), Gaps = 75/382 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMY 40
E Q +AH++ G++ AF+ + L+ F + WT+++
Sbjct: 120 ENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGC 179
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G E + F M GV D V A + L+D G+ V+ +
Sbjct: 180 LRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGF---------- 229
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
+++ GR+ D V ++L+D Y+KC Y + F+++ ++
Sbjct: 230 ---------YVESGRV----------IWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRN 270
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
LVSW A++AGY +E + EM I ++PN +++ L ACAQ+ + G+ +
Sbjct: 271 LVSWGALIAGYVQCNRYKEALKVFQEM--IIEGIEPNQSTVTSALTACAQLGSLDQGRWL 328
Query: 221 HGYVLRHHIHLSTACGFVI------CSCS-----VFNQLSTRDVVVWNSIISAFVRSGQV 269
H YV R + L++ G + C C VF +L +DV W ++I+ G
Sbjct: 329 HEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDA 388
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNA 317
+ +L+L +I + V+PN VT + VL AC + +GL + +
Sbjct: 389 LSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGC 448
Query: 318 LIDMYGRCGAIQKSRKIFVLMP 339
++D+ GR G ++++ K MP
Sbjct: 449 MVDLLGRAGRLEEAIKFIESMP 470
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 133/285 (46%), Gaps = 39/285 (13%)
Query: 100 ACVKRPLLDLFIKCGRME---------ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
A ++ +L F KCG + ITSGL F +++ L + + L +
Sbjct: 5 ATLRHSILCCFHKCGTFDHLNQTTSILITSGL---AHHTFFLSDLL---RSATKDLGYTL 58
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ + WN ++ ++ + V L+ + + P+ + +L A ++
Sbjct: 59 LLFDRLATPYIFLWNTIVRSFSASSQPQMV--LVAYSRLRNHGVIPDRHTFPLLLKAFSK 116
Query: 211 VKG----------VKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ VK G +V + CG+V CS +F + + +DVV W ++I
Sbjct: 117 LRNENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALI 176
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGSF 313
+ +R+G+ V+AL+ ++ + V+ + VT+VSVL A L + G + +G
Sbjct: 177 NGCLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRV 236
Query: 314 VWN-----ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+W+ AL+DMY +CG + K+F MP +NLVSW +I+ Y
Sbjct: 237 IWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGY 281
>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g30700; AltName: Full=Protein DYW9
gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 792
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 158/346 (45%), Gaps = 60/346 (17%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M+ Y Y E + +F +I++ R D + A +EL++ R+G ++
Sbjct: 188 WNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLA 247
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ V + L+ KCG++++ S LF E
Sbjct: 248 TKTGCYSHDYVLTGFISLYSKCGKIKMGSALFRE-------------------------- 281
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
++ D+V++NAM+ GY G E +L E+ + ++ +T L + V
Sbjct: 282 ----FRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSST------LVSLVPV 331
Query: 212 KG-VKLGKAIHGYVLR----HHIHLSTACGFVICSCS-------VFNQLSTRDVVVWNSI 259
G + L AIHGY L+ H +STA V + +F++ + + WN++
Sbjct: 332 SGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAM 391
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------L 308
IS + ++G DA+ L R++ + PN VTI +L AC +L AL G
Sbjct: 392 ISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDF 451
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ +V ALI MY +CG+I ++R++F LM KN V+WN MIS YG
Sbjct: 452 ESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYG 497
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 112/203 (55%), Gaps = 17/203 (8%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V+ +L Y+K ++ + F + +K L SWNAM++GY G E+ +L EM+ +
Sbjct: 356 VSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQ--K 413
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVIC 240
++ PN ++++ +L+ACAQ+ + LGK +H V I++STA CG +
Sbjct: 414 SEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAE 473
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ +F+ ++ ++ V WN++IS + GQ +AL++ +++ + + P VT + VL AC
Sbjct: 474 ARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSH 533
Query: 301 LAALPQGLGTGSFVWNALIDMYG 323
+ + G ++N++I YG
Sbjct: 534 AGLVKE----GDEIFNSMIHRYG 552
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 129/261 (49%), Gaps = 20/261 (7%)
Query: 112 KCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGY 171
+ GR+ + + D + L+ ++++ Y K ++ + F ++ +KD + WN M++GY
Sbjct: 136 RAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGY 195
Query: 172 ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG--------- 222
E + ++ + ++ + +T +L +L A A+++ ++LG IH
Sbjct: 196 RKNEMYVESIQVFRDL-INESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYS 254
Query: 223 --YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280
YVL I L + CG + ++F + D+V +N++I + +G+ +L L ++++
Sbjct: 255 HDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELM 314
Query: 281 VANVKPNTVTIVSVLPACLKLA--------ALPQGLGTGSFVWNALIDMYGRCGAIQKSR 332
++ + + T+VS++P L L + + V AL +Y + I+ +R
Sbjct: 315 LSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESAR 374
Query: 333 KIFVLMPHKNLVSWNVMISVY 353
K+F P K+L SWN MIS Y
Sbjct: 375 KLFDESPEKSLPSWNAMISGY 395
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 106/224 (47%), Gaps = 24/224 (10%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F +++ D+ +N ++ G+++ ++ + TD++PN+ + + ++A + +
Sbjct: 75 FLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRK-STDLKPNSSTYAFAISAASGFR 133
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVIC-----------SCSVFNQLSTRDVVVWNSIIS 261
+ G+ IHG + G I + VF+++ +D ++WN++IS
Sbjct: 134 DDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMIS 193
Query: 262 AFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPACLKLAALPQGLGTGS-------- 312
+ ++ V+++ + RD+I + + +T T++ +LPA +L L G+ S
Sbjct: 194 GYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCY 253
Query: 313 ---FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+V I +Y +CG I+ +F ++V++N MI Y
Sbjct: 254 SHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGY 297
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 32/189 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G E+ ++LF M P+ + AC++L +GK V+D +
Sbjct: 387 SWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLV 446
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
S FE + V+ +LI YAKC + +
Sbjct: 447 RSTDFESS------------------------------IYVSTALIGMYAKCGSIAEARR 476
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +K+ V+WN M++GY L G +E N+ EM+ + + P ++ VL AC+
Sbjct: 477 LFDLMTKKNEVTWNTMISGYGLHGQGQEALNIF--YEMLNSGITPTPVTFLCVLYACSHA 534
Query: 212 KGVKLGKAI 220
VK G I
Sbjct: 535 GLVKEGDEI 543
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPD--HFVCPKVYKACSELKDYRVGKDVYD 89
W +M+ Y + G +E +N+FY M++ G+ P F+C V ACS + G ++++
Sbjct: 488 TWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLC--VLYACSHAGLVKEGDEIFN 545
Query: 90 YMI-SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126
MI FE + ++D+ + G ++ E M
Sbjct: 546 SMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAM 583
>gi|242043708|ref|XP_002459725.1| hypothetical protein SORBIDRAFT_02g009440 [Sorghum bicolor]
gi|241923102|gb|EER96246.1| hypothetical protein SORBIDRAFT_02g009440 [Sorghum bicolor]
Length = 691
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 93/351 (26%), Positives = 168/351 (47%), Gaps = 39/351 (11%)
Query: 40 YNVL-------GYYEEIVNLFYLMIDK-GVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
YNVL G + + MIDK V PD F PKV +AC+E + +G+ V+
Sbjct: 126 YNVLISACLSHGLPRHALAAYQEMIDKDAVPPDAFTYPKVLRACAETANLALGRAVHVRA 185
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSH 150
+G+ + L+ ++ KCG + G+FE M+ +D + NS+I YA + +
Sbjct: 186 ADAGMDGHLFCQNALVSMYAKCGDVVAARGVFEGMEHRDVVSWNSMISGYAASGQWREAV 245
Query: 151 CKFSKIKQK----DLVSWNAMLAGY-ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
F +++ + + V+WN + GY + +R V + D M++ + ++L
Sbjct: 246 ELFRRMQAEGAEVNSVTWNTIAGGYIQMHDYRAAVGLIRD---MVRGGASIDFVTLVIGS 302
Query: 206 AACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVV 254
AC++ ++LGK IHG +R H + C + + +F + +V
Sbjct: 303 NACSRAGWLRLGKEIHGLAVRMQCHEIDSVINAVITMYARCNDMEHALMLFRMMRCPGLV 362
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL---------- 304
WN++I+ F S A + R+++ ++V+PN VT+V+ L C ++A L
Sbjct: 363 AWNTMIAGFALSDDAEAASRIFREMVCSDVQPNYVTVVTYLALCARVANLQHGRELHTHI 422
Query: 305 -PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
QG +WN+LIDMY + G + ++ +F M +++S+ MI+ +G
Sbjct: 423 IKQGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDHDMISFTSMIAGFG 473
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 158/340 (46%), Gaps = 38/340 (11%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVG----KDV 87
+W SM+ Y G + E V LF M +G + + ++ DYR +D+
Sbjct: 227 SWNSMISGYAASGQWREAVELFRRMQAEGAEVNSVTWNTIAGGYIQMHDYRAAVGLIRDM 286
Query: 88 YDYMISIKF-----EGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAK 142
SI F NAC + L L + + + E+D V N++I YA+
Sbjct: 287 VRGGASIDFVTLVIGSNACSRAGWLRLGKEIHGLAVRMQC-HEIDS---VINAVITMYAR 342
Query: 143 CRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLS 202
C ++ + F ++ LV+WN M+AG+AL E + + EM + +D+QPN +++
Sbjct: 343 CNDMEHALMLFRMMRCPGLVAWNTMIAGFALSDDAEAASRIFREM--VCSDVQPNYVTVV 400
Query: 203 GVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTR 251
LA CA+V ++ G+ +H ++++ I + + G + + +VF+ +
Sbjct: 401 TYLALCARVANLQHGRELHTHIIKQGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDH 460
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---- 307
D++ + S+I+ F G+ + +L + +I + + P+ + +V+VL AC + +G
Sbjct: 461 DMISFTSMIAGFGMQGKGIVSLRFFKRMIDSGIMPDAIIMVTVLSACSHSGLVDEGEELF 520
Query: 308 --------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+ ++ ++D+Y R G ++K+ ++ P
Sbjct: 521 DKMVKSYGIKPQMEHYSCMVDLYARAGLLEKAEELLNQTP 560
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 64/151 (42%), Gaps = 30/151 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++ G ++H H+I G + L + L++++ ++TSM+
Sbjct: 412 LQHGRELHTHIIKQGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDHDMISFTSMIAG 471
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD-----YMISI 94
+ + G + F MID G+ PD + V ACS G++++D Y I
Sbjct: 472 FGMQGKGIVSLRFFKRMIDSGIMPDAIIMVTVLSACSHSGLVDEGEELFDKMVKSYGIKP 531
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEE 125
+ E +C ++DL+ + G +E L +
Sbjct: 532 QMEHYSC----MVDLYARAGLLEKAEELLNQ 558
>gi|225438217|ref|XP_002263704.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49740-like [Vitis vinifera]
Length = 729
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 162/338 (47%), Gaps = 54/338 (15%)
Query: 36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIK 95
M+G +G EE + +F M + +RP V +CS RV V+ I +
Sbjct: 258 MIGGLASVGRDEEALIMFKEMQEACLRPTELTFVSVMSSCSSA---RVSHQVHAQAIKMG 314
Query: 96 FEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSK 155
FE AC V+N+ + Y+ C L H F +
Sbjct: 315 FE--ACTP----------------------------VSNAAMTMYSSCGNLHAVHMVFDR 344
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
+++KDL+SWN ++ YA G F +L ++M + ++P+ ++ +LA+ ++ VK
Sbjct: 345 LEEKDLISWNIIIMNYAQGNFYRLA--ILAFLQMQRAGIEPDEFTIGSLLASSESLEIVK 402
Query: 216 LGKA-IHGYVLRHHIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
+ +A + L I +S A G + + VFN +S+ +++ WN+IIS F+ +G
Sbjct: 403 MFQALVSKNGLNSKIEVSNALVSAFSKHGQIEQAYQVFNNMSSPNLISWNTIISGFLFNG 462
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGSF----VWN 316
+ L+ +++++ +KPN T+ VL C ++AL G L +G F + N
Sbjct: 463 FTLQGLEQFYELLMSTLKPNAYTLSIVLSICASISALRHGKQIHGYILRSGVFSVTSLGN 522
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
ALI MY +CG + S +IF +M +++VSWN MIS Y
Sbjct: 523 ALITMYAKCGDLDWSLRIFNVMNGRDIVSWNAMISAYA 560
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 162/330 (49%), Gaps = 30/330 (9%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH 65
QVHA I G E C + + + ++ + ++ ++ V EE + + +I +
Sbjct: 305 QVHAQAIKMGFEACTPVSNAAMTMYSSCGNLHAVHMVFDRLEEKDLISWNIIIMNYAQGN 364
Query: 66 FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEE 125
F + + L+ R G + ++ I G+ L++ + +GL +
Sbjct: 365 FYRLAI---LAFLQMQRAGIEPDEFTI-----GSLLASSESLEIVKMFQALVSKNGLNSK 416
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
++ V+N+L+ ++K ++ ++ F+ + +L+SWN +++G+ GF + L
Sbjct: 417 IE----VSNALVSAFSKHGQIEQAYQVFNNMSSPNLISWNTIISGFLFNGFT--LQGLEQ 470
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA----------- 234
E++ + ++PN +LS VL+ CA + ++ GK IHGY+LR + T+
Sbjct: 471 FYELLMSTLKPNAYTLSIVLSICASISALRHGKQIHGYILRSGVFSVTSLGNALITMYAK 530
Query: 235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVS 293
CG + S +FN ++ RD+V WN++ISA+ + G+ +A+ + + VKP+ T +
Sbjct: 531 CGDLDWSLRIFNVMNGRDIVSWNAMISAYAQHGKGKEAVHFFKAMQDSGGVKPDQATFTA 590
Query: 294 VLPACLKLAALPQGLGTGSFVWNALIDMYG 323
VL AC + G+ ++N++++ YG
Sbjct: 591 VLSACSHAGLVDD----GTRIFNSMVNDYG 616
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 141/324 (43%), Gaps = 49/324 (15%)
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACS-ELKDYRVGKDVYDYMISIKFEGNACVK 103
+ E +NLF M GVR D + V CS EL D+ G++V+ +I F A V
Sbjct: 165 HTEIALNLFREMHQLGVRHDKYTFASVLSLCSLELLDF--GREVHTLVIKTGFLVRASVI 222
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
LL ++ G++ +FEE + D ++
Sbjct: 223 NALLTMYFNSGKVADAYEVFEEAESTV----------------------------HDDIT 254
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK--------GVK 215
+N M+ G A G EE + EM+ + ++P ++ V+++C+ + +K
Sbjct: 255 FNVMIGGLASVGRDEEALIMFKEMQ--EACLRPTELTFVSVMSSCSSARVSHQVHAQAIK 312
Query: 216 LGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDL 275
+G V + + ++CG + VF++L +D++ WN II + + A+
Sbjct: 313 MGFEACTPVSNAAMTMYSSCGNLHAVHMVFDRLEEKDLISWNIIIMNYAQGNFYRLAILA 372
Query: 276 LRDVIVANVKPNTVTIVSVLPACLKLAAL--------PQGLGTGSFVWNALIDMYGRCGA 327
+ A ++P+ TI S+L + L + GL + V NAL+ + + G
Sbjct: 373 FLQMQRAGIEPDEFTIGSLLASSESLEIVKMFQALVSKNGLNSKIEVSNALVSAFSKHGQ 432
Query: 328 IQKSRKIFVLMPHKNLVSWNVMIS 351
I+++ ++F M NL+SWN +IS
Sbjct: 433 IEQAYQVFNNMSSPNLISWNTIIS 456
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/316 (23%), Positives = 139/316 (43%), Gaps = 25/316 (7%)
Query: 61 VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITS 120
++PDHF AC+ L+ G ++ Y I + V LL + K +
Sbjct: 49 LKPDHFTLSSTLTACANLRYAASGNQLHAYSIQTGLKAYTHVGNTLLSFYAKSKDLVSVQ 108
Query: 121 GLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREE 179
+F E++ D +L+ K + + F++ + V WNA++ G A E
Sbjct: 109 RVFNEIENPDVYSWTTLLSACTKLGQIGYACHLFNQTPRMIPVVWNAIITGCAENKHTEI 168
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH------GYVLRHHI---- 229
NL EM Q ++ + + + VL+ C+ ++ + G+ +H G+++R +
Sbjct: 169 ALNLFREMH--QLGVRHDKYTFASVLSLCS-LELLDFGREVHTLVIKTGFLVRASVINAL 225
Query: 230 -HLSTACGFVICSCSVFNQLST--RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286
+ G V + VF + + D + +N +I G+ +AL + +++ A ++P
Sbjct: 226 LTMYFNSGKVADAYEVFEEAESTVHDDITFNVMIGGLASVGRDEEALIMFKEMQEACLRP 285
Query: 287 NTVTIVSVLPAC--------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLM 338
+T VSV+ +C + A+ G + V NA + MY CG + +F +
Sbjct: 286 TELTFVSVMSSCSSARVSHQVHAQAIKMGFEACTPVSNAAMTMYSSCGNLHAVHMVFDRL 345
Query: 339 PHKNLVSWNVMISVYG 354
K+L+SWN++I Y
Sbjct: 346 EEKDLISWNIIIMNYA 361
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 87/222 (39%), Gaps = 30/222 (13%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G Q+H +++ GV LG+ L+ ++ +W +M+ Y
Sbjct: 502 GKQIHGYILRSGVFSVTSLGNALITMYAKCGDLDWSLRIFNVMNGRDIVSWNAMISAYAQ 561
Query: 43 LGYYEEIVNLFYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS-IKFEGNA 100
G +E V+ F M D G V+PD V ACS G +++ M++ FE A
Sbjct: 562 HGKGKEAVHFFKAMQDSGGVKPDQATFTAVLSACSHAGLVDDGTRIFNSMVNDYGFEPGA 621
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKC------RYLKVSHCKFS 154
++DL + G +E L +V++ ++ C R ++
Sbjct: 622 DHLSCIVDLLGRAGYLEEAERLINSKHLK-IVSSIWWTLFSACAAHGNLRLGRIVAGFLL 680
Query: 155 KIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP 196
+I+Q D + + YA G EE N D M+ + QP
Sbjct: 681 EIEQNDPAVYVLLSNIYAAAGQWEEAANTRDLMQKTRVAKQP 722
>gi|242067895|ref|XP_002449224.1| hypothetical protein SORBIDRAFT_05g006590 [Sorghum bicolor]
gi|241935067|gb|EES08212.1| hypothetical protein SORBIDRAFT_05g006590 [Sorghum bicolor]
Length = 570
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 151/329 (45%), Gaps = 52/329 (15%)
Query: 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL 107
+ + L+ M GV PDH+ P V AC+ + R+G+ V+ + +G+ V+ L+
Sbjct: 104 DALALYKRMRAAGVAPDHYTYPIVLPACAAARQPRLGRAVHGDAVRFALDGDGFVRCTLI 163
Query: 108 DLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAM 167
++ + G + +F E S + +VSW AM
Sbjct: 164 AMYFQEGEVADAELVFAE----------------------------SHGSSRTVVSWTAM 195
Query: 168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH 227
+AGY F E L M + + PN I+L L + + G+ +HG+V+R
Sbjct: 196 VAGYVQNYFFGEALALFSTM--VAEGVLPNEITLISFLPCLQGQEWLDAGEMVHGFVIRS 253
Query: 228 ----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL 276
+I L+ A CG + + ++F ++ R +V WN++++ + + G VV+A+
Sbjct: 254 GFDANIPLANALIAMYGKCGSIPMAEALFEGMAVRSLVSWNTMVAIYEQHGDVVEAIKFF 313
Query: 277 RDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWNALIDMYGRC 325
++ V + VT+VSVL AC + AL GL + + N L+DMY +C
Sbjct: 314 HRMLTEKVGFDCVTLVSVLSACGRSGALETGKWVHEFARSHGLDADARIGNVLVDMYAKC 373
Query: 326 GAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G I +RK+F + + +VSW+ MIS Y
Sbjct: 374 GEIADARKVFDCLHVRGVVSWSAMISAYA 402
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 140/327 (42%), Gaps = 57/327 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY-RVGKDVYDY 90
+WT+M+ Y ++ E + LF M+ +GV P+ + C + +++ G+ V+ +
Sbjct: 191 SWTAMVAGYVQNYFFGEALALFSTMVAEGVLPNEITLIS-FLPCLQGQEWLDAGEMVHGF 249
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+I F+ N PL N+LI Y KC + ++
Sbjct: 250 VIRSGFDANI----PL--------------------------ANALIAMYGKCGSIPMAE 279
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + + LVSWN M+A Y G E M + + + ++L VL+AC +
Sbjct: 280 ALFEGMAVRSLVSWNTMVAIYEQHGDVVEAIKFFHRM--LTEKVGFDCVTLVSVLSACGR 337
Query: 211 VKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
++ GK +H + H + + CG + + VF+ L R VV W+++
Sbjct: 338 SGALETGKWVHEFARSHGLDADARIGNVLVDMYAKCGEIADARKVFDCLHVRGVVSWSAM 397
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----- 314
ISA+ G +AL L + V+PN+ T +VL AC + +GL + +
Sbjct: 398 ISAYANHGDSEEALKLFCLMKSEGVRPNSFTFTAVLVACGHSGLVNEGLKHFNSILSDYQ 457
Query: 315 -------WNALIDMYGRCGAIQKSRKI 334
+ ++DM GR G + ++ +I
Sbjct: 458 MSPTLEHYACIVDMLGRAGRLVEAYEI 484
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 54/132 (40%), Gaps = 23/132 (17%)
Query: 244 VFNQLSTRDVVVWNSII--------SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
VF+ RD +WN+++ + VDAL L + + A V P+ T VL
Sbjct: 69 VFDAAPVRDAYMWNTLLRAHAHSHSHSQSSHSHAVDALALYKRMRAAGVAPDHYTYPIVL 128
Query: 296 PACLKLAALPQ------------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLM--PHK 341
PAC A P+ L FV LI MY + G + + +F +
Sbjct: 129 PAC-AAARQPRLGRAVHGDAVRFALDGDGFVRCTLIAMYFQEGEVADAELVFAESHGSSR 187
Query: 342 NLVSWNVMISVY 353
+VSW M++ Y
Sbjct: 188 TVVSWTAMVAGY 199
>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 783
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 98/391 (25%), Positives = 171/391 (43%), Gaps = 75/391 (19%)
Query: 7 VHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNVLGY 45
+HAH I+ G F+GS L++++C W +M+
Sbjct: 130 LHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCC 189
Query: 46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP 105
+++ + LF M+ GVR D V A +EL++ +VG
Sbjct: 190 FDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVG--------------------- 228
Query: 106 LLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWN 165
+ I+C ++I G + V LI Y+KC + + F +I + DL+++N
Sbjct: 229 ---MGIQCLALKIGFGFCD------YVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYN 279
Query: 166 AMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL 225
AM++G+ G E L E+ + +TI G++ + + L +IHG+ +
Sbjct: 280 AMISGFTANGGTECSVKLFRELLFSGERVSSSTIV--GLIPLHSPFGHLHLACSIHGFCV 337
Query: 226 RHHIHLSTACGFVICSC-----------SVFNQLSTRDVVVWNSIISAFVRSGQVVDALD 274
+ I L+ + +F++ + VV WN++IS + ++G A+
Sbjct: 338 KSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAIS 397
Query: 275 LLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYG 323
L ++++ PN VTI ++L AC +L +L G L +V AL+DMY
Sbjct: 398 LFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYA 457
Query: 324 RCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+CG I ++ ++F M KN V+WN MI YG
Sbjct: 458 KCGNISEAWQLFDSMSEKNTVTWNTMIFGYG 488
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 116/231 (50%), Gaps = 25/231 (10%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V+ + Y K + ++ F + +K +V+WNAM++GY G E +L EM ++
Sbjct: 347 VSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEM--MK 404
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVIC 240
T+ PN ++++ +L+ACAQ+ + GK +H + L +I++STA CG +
Sbjct: 405 TEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISE 464
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ +F+ +S ++ V WN++I + G +AL L +++ P+ VT +SVL AC
Sbjct: 465 AWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSH 524
Query: 301 LAALPQGLGTGSFVWNA------------LIDMYGRCGAIQKSRKIFVLMP 339
+ +G + N ++D+ GR G ++K+ + MP
Sbjct: 525 AGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMP 575
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 116/241 (48%), Gaps = 24/241 (9%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
+ L DF A + + F + + D+ +N ++ G++L +L +
Sbjct: 50 LTQKLFDFSAT----RHARALFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRR-N 104
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKA---IHGY---VLRHHIHLSTACGF--VICSCS 243
T++ P+ + + +AAC+ K + L A I GY V + C F V+ +
Sbjct: 105 TNLSPDNFTYAFAVAACSNDKHLMLLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARK 164
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
VF+ + RD V+WN++I+ V++ D++ L R+++ V+ ++ T+ +VLPA +L
Sbjct: 165 VFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQE 224
Query: 304 LPQGLGTG-----------SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
L G+G +V LI +Y +CG + +R +F + +L+++N MIS
Sbjct: 225 LKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISG 284
Query: 353 Y 353
+
Sbjct: 285 F 285
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 107/268 (39%), Gaps = 56/268 (20%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y G E ++LF M+ P+ + AC++L GK V+ +
Sbjct: 379 WNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIK 438
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
S E ++ + V+ +L+D YAKC + +
Sbjct: 439 S------------------------------ENLEPNIYVSTALVDMYAKCGNISEAWQL 468
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + +K+ V+WN M+ GY L G+ E L + EM+ P+ ++ VL AC+
Sbjct: 469 FDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYN--EMLHLGYNPSAVTFLSVLYACSHAG 526
Query: 213 GVKLGKAI-HGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V G+ I H V ++ I + + ++ RSGQ+
Sbjct: 527 LVGEGEEIFHNMVNKYRIEPL--------------------IEHYACMVDILGRSGQLEK 566
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACL 299
AL+ ++ + V+P ++L AC+
Sbjct: 567 ALEFIKKM---PVEPGPAVWGTLLGACM 591
>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 130/244 (53%), Gaps = 24/244 (9%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
++ LI Y KC L + F +++++++VSW AM++GY+ GF E +L ++M++
Sbjct: 47 LSTRLIILYTKCECLGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLF--VQMLR 104
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTA-------CGFVIC 240
+D +PN + + VL++C G +LG+ IH ++ + +HI + ++ G +
Sbjct: 105 SDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHE 164
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ VF L RDVV +IIS + + G +AL+L + + N VT S+L A
Sbjct: 165 ARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSG 224
Query: 301 LAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
LAAL G S V N+LIDMY +CG + +RKIF MP + ++SWN M
Sbjct: 225 LAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAM 284
Query: 350 ISVY 353
+ Y
Sbjct: 285 LVGY 288
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/382 (21%), Positives = 165/382 (43%), Gaps = 78/382 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G +VHAH+I +L ++L+ ++ +WT+M+ Y+
Sbjct: 29 GQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERNVVSWTAMISGYSQ 88
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G+ E ++LF M+ P+ F V +C+ + +G+ ++ ++ +E +
Sbjct: 89 RGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENH--- 145
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
V +SL+D YAK + + F + ++D+V
Sbjct: 146 ---------------------------IFVGSSLLDMYAKAGRIHEARGVFECLPERDVV 178
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
S A+++GYA G EE L ++ + M N ++ + +L A + + + GK +H
Sbjct: 179 SCTAIISGYAQLGLDEEALELFCRLQ--REGMSSNYVTYASLLTALSGLAALDHGKQVHS 236
Query: 223 YVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+VLR I + + CG + + +FN + R V+ WN+++ + + G+ ++
Sbjct: 237 HVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIE 296
Query: 272 ALDLLRDVIVAN-VKPNTVTIVSVLPACLKLAALPQGL-------------GTGSFVWNA 317
+ L + + N VKP++VT ++VL C +GL G +
Sbjct: 297 VVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGC 356
Query: 318 LIDMYGRCGAIQKSRKIFVLMP 339
+ID+ GR G ++++ ++ MP
Sbjct: 357 VIDLLGRAGRVEEAFELIKKMP 378
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 86/173 (49%), Gaps = 22/173 (12%)
Query: 204 VLAACAQVKGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRD 252
+L C + V+ G+ +H ++++ I L T C + C+ VF+++ R+
Sbjct: 16 LLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERN 75
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS 312
VV W ++IS + + G +AL L ++ ++ +PN T +VL +C + G S
Sbjct: 76 VVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHS 135
Query: 313 -----------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
FV ++L+DMY + G I ++R +F +P +++VS +IS Y
Sbjct: 136 HIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 188
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 99/230 (43%), Gaps = 52/230 (22%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
ELG Q+H+H+ E F+GS LL+++ + T+++ Y
Sbjct: 128 ELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGY 187
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
LG EE + LF + +G+ ++ + A S L GK V+ +++
Sbjct: 188 AQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVL-------- 239
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
R L ++ ++ NSLID Y+KC L + F+ + +
Sbjct: 240 ---RCELPFYV-------------------VLQNSLIDMYSKCGNLNYARKIFNNMPVRT 277
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
++SWNAML GY+ G EV L M + ++P++++ VL+ C+
Sbjct: 278 VISWNAMLVGYSKHGKGIEVVKLFKLMRE-ENKVKPDSVTFLAVLSGCSH 326
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 97/219 (44%), Gaps = 35/219 (15%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++ G QVH+H++ C + L + L++++ +W +M+
Sbjct: 228 LDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVG 287
Query: 40 YNVLGYYEEIVNLFYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
Y+ G E+V LF LM ++ V+PD V CS G +++D M++ E
Sbjct: 288 YSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEI 347
Query: 99 NACVKRP--LLDLFIKCGRMEITSGLFEEM--DQDFLVNNSLIDFYAKCRYLKVSH---- 150
A ++ ++DL + GR+E L ++M + + SL+ CR ++
Sbjct: 348 EAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLL---GACRVHSNTNIGEF 404
Query: 151 --CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
C+ +I+ ++ ++ + YA G E+V N+ + M
Sbjct: 405 VGCRLLEIEPENAGNYVILSNLYASAGRWEDVRNVRELM 443
>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 790
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 92/366 (25%), Positives = 172/366 (46%), Gaps = 44/366 (12%)
Query: 22 LGSQLLEVFCN------WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKAC 75
LG +LLE + + +M+ Y G+Y+E + + M+ G+ D F P V +AC
Sbjct: 237 LGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRAC 296
Query: 76 SELKDYRVGKDVYDYMI-----SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDF 130
+ ++GK V+ Y++ S F+ + L+ L+ KCG+ + +FE+M
Sbjct: 297 ATAGLLQLGKQVHAYVLRREDFSFHFDNS------LVSLYYKCGKFDEARAIFEKMPAKD 350
Query: 131 LVN-NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
LV+ N+L+ Y ++ + F ++K+K+++SW M++G A GF EE L M+
Sbjct: 351 LVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMK- 409
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-----------HHIHLSTACGFV 238
+ +P + SG + +CA + G+ H +L+ I + CG V
Sbjct: 410 -REGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVV 468
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ VF + D V WN++I+A + G +A+D+ +++ ++P+ +T+++VL AC
Sbjct: 469 EEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTAC 528
Query: 299 LKLAALPQG------------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS- 345
+ QG + G+ + LID+ R G + + +P K
Sbjct: 529 SHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEI 588
Query: 346 WNVMIS 351
W ++S
Sbjct: 589 WEALLS 594
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/382 (22%), Positives = 160/382 (41%), Gaps = 79/382 (20%)
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+N GY +NLF M +G +PD+F V + + D D ++F
Sbjct: 125 HNNDGY--SAINLFCKMKHEGFKPDNFTFASVLAGLALVAD--------DEKQCVQFHAA 174
Query: 100 A---------CVKRPLLDLFIKCGR----MEITSGLFEE-MDQDFLVNNSLIDFYAKCRY 145
A V L+ ++ KC + +F+E +++D +++ Y K Y
Sbjct: 175 ALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGY 234
Query: 146 LKVSHCKFSKIKQK-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGV 204
+ + LV++NAM++GY GF +E ++ M+ + ++ + + V
Sbjct: 235 FDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMV--RRMVSSGIELDEFTYPSV 292
Query: 205 LAACAQVKGVKLGKAIHGYVLRHH----------IHLSTACGFVICSCSVFNQLSTRDVV 254
+ ACA ++LGK +H YVLR + L CG + ++F ++ +D+V
Sbjct: 293 IRACATAGLLQLGKQVHAYVLRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLV 352
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANV------------------------------ 284
WN+++S +V SG + +A + +++ N+
Sbjct: 353 SWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREG 412
Query: 285 -KPNTVTIVSVLPACLKLAA-----------LPQGLGTGSFVWNALIDMYGRCGAIQKSR 332
+P + +C L A L G + NALI MY +CG ++++R
Sbjct: 413 FEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEAR 472
Query: 333 KIFVLMPHKNLVSWNVMISVYG 354
++F MP + VSWN +I+ G
Sbjct: 473 QVFRTMPCLDSVSWNALIAALG 494
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/338 (22%), Positives = 143/338 (42%), Gaps = 73/338 (21%)
Query: 82 RVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFY 140
++ + V+ +I+ F+ A + L+D++ K + LF+E+ + D + +++ Y
Sbjct: 31 QLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGY 90
Query: 141 AKCRYLKVSHCKFSKIK--QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT 198
+ ++ F K +D V +NAM+ G++ NL +M+ +P+
Sbjct: 91 CASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMK--HEGFKPDN 148
Query: 199 ISLSGVLAA----------CAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCS----- 243
+ + VLA C Q L K+ GY+ +S A V C+
Sbjct: 149 FTFASVLAGLALVADDEKQCVQFHAAAL-KSGAGYI----TSVSNALVSVYSKCASSPSL 203
Query: 244 ------VFNQLSTRD--------------------------------VVVWNSIISAFVR 265
VF+++ +D +V +N++IS +V
Sbjct: 204 LHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVN 263
Query: 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW---------- 315
G +AL+++R ++ + ++ + T SV+ AC L G ++V
Sbjct: 264 RGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFD 323
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
N+L+ +Y +CG ++R IF MP K+LVSWN ++S Y
Sbjct: 324 NSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGY 361
>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930 [Vitis vinifera]
gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
Length = 743
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 86/363 (23%), Positives = 174/363 (47%), Gaps = 34/363 (9%)
Query: 24 SQLLEVF--------CNWTSMMGMYNVLGYYEEIVNLFYLMI-DKGVRPDHFVCPKVYKA 74
SQ+ ++F +W + Y G + V ++ LM+ D + + +
Sbjct: 88 SQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLIL 147
Query: 75 CSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVN 133
CS+ + +G+ + ++ F + V PL+D++ K G + F+EM +++ ++
Sbjct: 148 CSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMC 207
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
N++I +C ++ S F +K++D +SW M+ G G E ++ EM +
Sbjct: 208 NTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFA 267
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSC 242
M + + VL AC + + GK IH YV+R + + + C + +
Sbjct: 268 M--DQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAE 325
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
+VF ++ ++V+ W +++ + ++G +A+ + ++ V+P+ T+ SV+ +C LA
Sbjct: 326 TVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLA 385
Query: 303 ALPQGL---------GTGSF--VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+L +G G SF V NALI +YG+CG+ + S ++F M ++ VSW +++
Sbjct: 386 SLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLA 445
Query: 352 VYG 354
Y
Sbjct: 446 GYA 448
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 151/344 (43%), Gaps = 56/344 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT M+ G E +++F M G D F V AC L GK ++ Y+
Sbjct: 237 SWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYV 296
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + N V ++L+D Y+KCR +K +
Sbjct: 297 IRTDHKDNV------------------------------FVGSALVDMYSKCRSIKSAET 326
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ QK+++SW AML GY GF EE + EM+ + ++P+ +L V+++CA +
Sbjct: 327 VFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQ--RNGVEPDDFTLGSVISSCANL 384
Query: 212 KGVKLGKAIHGYVL-----------RHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ G H L I L CG S +F +++ RD V W +++
Sbjct: 385 ASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALL 444
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL----------GT 310
+ + + G+ + + L ++ +KP+ VT + VL AC + + +GL G
Sbjct: 445 AGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGI 504
Query: 311 GSFV--WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMIS 351
V +ID+ GR G ++++R MP H ++V W ++S
Sbjct: 505 MPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLS 548
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/336 (24%), Positives = 149/336 (44%), Gaps = 55/336 (16%)
Query: 73 KACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLV 132
K C E ++ K ++ ++ + + L+ + K G + +F+ + Q L
Sbjct: 13 KLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQPNLF 72
Query: 133 N-NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
+ N+++ Y+K L F+ + +D VSWN ++GYA G + + M +
Sbjct: 73 SWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLM-LKD 131
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVIC 240
M N I+ S +L C++ + V LG+ I+G +L+ + + T G +
Sbjct: 132 AAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYD 191
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQV------------------------------- 269
+ F+++ R+VV+ N++I+ +R G +
Sbjct: 192 AKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLE 251
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNAL 318
+ALD+ R++ +A + T SVL AC L AL +G + FV +AL
Sbjct: 252 REALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSAL 311
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+DMY +C +I+ + +F MP KN++SW M+ YG
Sbjct: 312 VDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYG 347
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 101/246 (41%), Gaps = 53/246 (21%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G Q+HA++I + F+GS L++++ +WT+M+ Y
Sbjct: 289 GKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQ 348
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G+ EE V +F+ M GV PD F V +C+ L G + + V
Sbjct: 349 NGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITV 408
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L+ L+ KCG E + LF EM+ +D V
Sbjct: 409 SNALITLYGKCGSTENSHRLFTEMN------------------------------IRDEV 438
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW A+LAGYA G E L + M+ ++P+ ++ GVL+AC++ V+ G
Sbjct: 439 SWTALLAGYAQFGKANETIGLFE--RMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFE 496
Query: 223 YVLRHH 228
+++ H
Sbjct: 497 SMIKEH 502
>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 95/372 (25%), Positives = 178/372 (47%), Gaps = 80/372 (21%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDV--YDY 90
W M+ Y +G ++E + LF +M++KG+ K ++ SEL D +DV ++
Sbjct: 168 WNFMVSEYAKIGDFKESICLFKIMVEKGIEG------KRPESASELFDKLCDRDVISWNS 221
Query: 91 MISIKFEGNACVKRPL------------------LDLFIKC--------GRMEITSGLFE 124
MIS + N +R L + + + C G+ + +
Sbjct: 222 MIS-GYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS 280
Query: 125 EMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLL 184
++ +N+L+D Y+KC L + F K+ ++++VSW +M+AGY G+ + LL
Sbjct: 281 SFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILL 340
Query: 185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI-----------HLST 233
+ME + ++ + ++++ +L ACA+ + GK +H Y+ +++ +
Sbjct: 341 QQME--KEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYA 398
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
CG + + SVF+ + +D++ WN++ V +KP++ T+
Sbjct: 399 KCGSMEGANSVFSTMVVKDIISWNTM---------------------VGELKPDSRTMAC 437
Query: 294 VLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
+LPAC L+AL +G + V NAL+D+Y +CG + +R +F ++P K+
Sbjct: 438 ILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKD 497
Query: 343 LVSWNVMISVYG 354
LVSW VMI+ YG
Sbjct: 498 LVSWTVMIAGYG 509
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 144/331 (43%), Gaps = 76/331 (22%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ Y G+ + + L M +GV+ D + AC+ GKDV+DY
Sbjct: 319 SWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDY- 377
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
IK M S LF V N+L+D YAKC ++ ++
Sbjct: 378 -------------------IKANNM--ASNLF--------VCNALMDMYAKCGSMEGANS 408
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS + KD++SWN M+ +++P++ +++ +L ACA +
Sbjct: 409 VFSTMVVKDIISWNTMVG-----------------------ELKPDSRTMACILPACASL 445
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ GK IHGY+LR+ + L CG + + +F+ + ++D+V W +I
Sbjct: 446 SALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMI 505
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN---- 316
+ + G +A+ ++ A ++P+ V+ +S+L AC L QG + N
Sbjct: 506 AGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNI 565
Query: 317 --------ALIDMYGRCGAIQKSRKIFVLMP 339
++D+ R G + K+ K +P
Sbjct: 566 EPKLEHYACMVDLLSRTGNLSKAYKFIETLP 596
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 97/252 (38%), Gaps = 79/252 (31%)
Query: 179 EVTNLLDEMEMI----QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA 234
++ +L + ME++ +++++ T VL CA +K + GK +H + + + + A
Sbjct: 78 QLGDLENAMELVCMCQKSELETKT--YGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEA 135
Query: 235 CGFVICS----CS-------VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL------- 276
G + S C VF+ + ++V +WN ++S + + G +++ L
Sbjct: 136 LGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKG 195
Query: 277 ------------------RDVIVAN--------------------------VKPNTVTIV 292
RDVI N + + TI+
Sbjct: 196 IEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATII 255
Query: 293 SVLPACLKLAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHK 341
SVL C L G S N L+DMY +CG + + ++F M +
Sbjct: 256 SVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGER 315
Query: 342 NLVSWNVMISVY 353
N+VSW MI+ Y
Sbjct: 316 NVVSWTSMIAGY 327
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 13/113 (11%)
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS 312
V +N+ I F + G + +A++L+ + + T T SVL C L +L G S
Sbjct: 66 VTDYNAKILHFCQLGDLENAMELV--CMCQKSELETKTYGSVLQLCAGLKSLTDGKKVHS 123
Query: 313 FVWN-----------ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + L+ Y CG +++ R++F M KN+ WN M+S Y
Sbjct: 124 IIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYA 176
>gi|357119036|ref|XP_003561252.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g71490-like [Brachypodium distachyon]
Length = 692
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 91/349 (26%), Positives = 166/349 (47%), Gaps = 36/349 (10%)
Query: 40 YNVL-------GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
YN+L G+ + + M V PD F P V +AC+E D +G+ V+ + +
Sbjct: 130 YNILISSCLRHGFPRHALAAYQQMARSAVLPDAFTYPSVLRACAEAGDLALGRAVHLHGL 189
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHC 151
+ G+ + L+ ++ K G + +FE M Q +V+ NS+I Y +
Sbjct: 190 ATGVGGHLFFQNALVSMYAKSGDLVAARKVFEGMAQKDVVSWNSMISAYVAVGQWVQAVE 249
Query: 152 KFSKIKQKDL----VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
F +++ ++ V+WN + Y L+ EM+ + ++L A
Sbjct: 250 LFERMRAEEAEVNSVTWNTIAGVYINTRDHRAAVGLI--REMVSDGAAVDFVTLVIGSNA 307
Query: 208 CAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVW 256
C++V ++LGK IHG +R + I + C + +C +F L+ VV W
Sbjct: 308 CSRVGWLRLGKEIHGLAVRMNCDGVESVANALITMYARCKHMDSACLLFKMLACPGVVTW 367
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-- 314
N++I++F S + +A L+ +++ A V+PN VT+V++L C ++A L G S +
Sbjct: 368 NTMIASFALSDEAEEASRLVHEMVGAGVQPNYVTVVTLLALCARVANLQHGQELHSHIVK 427
Query: 315 ---------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
WN+LIDMY + G + ++ +F M ++++S+ MI+ YG
Sbjct: 428 NGFKGYRLLWNSLIDMYSKSGXLSVAQNVFDTMDDRDMISYTXMIAGYG 476
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 89/390 (22%), Positives = 178/390 (45%), Gaps = 63/390 (16%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ LG VH H + GV F + L+ ++ +W SM+
Sbjct: 178 LALGRAVHLHGLATGVGGHLFFQNALVSMYAKSGDLVAARKVFEGMAQKDVVSWNSMISA 237
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS------ 93
Y +G + + V LF M + + + +D+R + M+S
Sbjct: 238 YVAVGQWVQAVELFERMRAEEAEVNSVTWNTIAGVYINTRDHRAAVGLIREMVSDGAAVD 297
Query: 94 ---IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFL--VNNSLIDFYAKCRYLKV 148
+ NAC + +++ G+ EI GL M+ D + V N+LI YA+C+++
Sbjct: 298 FVTLVIGSNACSRVG----WLRLGK-EI-HGLAVRMNCDGVESVANALITMYARCKHMDS 351
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
+ F + +V+WN M+A +AL EE + L+ EM + +QPN +++ +LA C
Sbjct: 352 ACLLFKMLACPGVVTWNTMIASFALSDEAEEASRLVHEM--VGAGVQPNYVTVVTLLALC 409
Query: 209 AQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWN 257
A+V ++ G+ +H +++++ I + + G + + +VF+ + RD++ +
Sbjct: 410 ARVANLQHGQELHSHIVKNGFKGYRLLWNSLIDMYSKSGXLSVAQNVFDTMDDRDMISYT 469
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-----TGS 312
+I+ + G+ AL L +I + +KP+ +++V+VL AC + +G T S
Sbjct: 470 XMIAGYGMQGKGTIALRLFDQMIDSGIKPDHISMVTVLSACSHSGLVTEGEKLFDKMTSS 529
Query: 313 FV-------WNALIDMYGRCGAIQKSRKIF 335
+ ++ ++D+Y R G ++K+ +
Sbjct: 530 YGIKPQMEHYSCMVDLYARSGLLEKAEGML 559
>gi|334188487|ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic; Flags: Precursor
gi|9759241|dbj|BAB09765.1| unnamed protein product [Arabidopsis thaliana]
gi|332009773|gb|AED97156.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 544
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 86/331 (25%), Positives = 167/331 (50%), Gaps = 30/331 (9%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
+T+M+ + G + V+L++ MI V PD++V V KAC D +V ++++ ++
Sbjct: 95 YTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKAC----DLKVCREIHAQVL 150
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F + V +++++ K G + +F+EM D+D + +I+ Y++C ++K +
Sbjct: 151 KLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECGFIKEALE 210
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +K KD V W AM+ G + L EM+M ++ N + VL+AC+ +
Sbjct: 211 LFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQM--ENVSANEFTAVCVLSACSDL 268
Query: 212 KGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSII 260
++LG+ +H +V + LS + CG + + VF + +DV+ +N++I
Sbjct: 269 GALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMI 328
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL---GTGSFVWNA 317
S G V+A++ RD++ +PN VT+V++L AC L GL + V+N
Sbjct: 329 SGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNV 388
Query: 318 ---------LIDMYGRCGAIQKSRKIFVLMP 339
++D+ GR G ++++ + +P
Sbjct: 389 EPQIEHYGCIVDLLGRVGRLEEAYRFIENIP 419
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 123/278 (44%), Gaps = 59/278 (21%)
Query: 127 DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDE 186
DQD V LI + + ++ FS + ++ + AM+ G+ G + +L
Sbjct: 58 DQDAFVVFELIRVCSTLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHR 117
Query: 187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL--------------------- 225
M I + P+ ++ VL AC +K+ + IH VL
Sbjct: 118 M--IHNSVLPDNYVITSVLKAC----DLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKS 171
Query: 226 ---------------RHHIHLS------TACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
R H+ + + CGF+ + +F + +D V W ++I V
Sbjct: 172 GELVNAKKMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLV 231
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSF 313
R+ ++ AL+L R++ + NV N T V VL AC L AL Q + +F
Sbjct: 232 RNKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNF 291
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
V NALI+MY RCG I ++R++F +M K+++S+N MIS
Sbjct: 292 VGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMIS 329
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 88/184 (47%), Gaps = 21/184 (11%)
Query: 191 QTDMQPNTISLS------GVLAACAQVKGV-----KLGKAIH---GYVLRHHIHLSTACG 236
+ D NT+ LS VL +C + V K+ + H +V+ I + +
Sbjct: 16 RRDPDSNTLRLSRRKTLISVLRSCKNIAHVPSIHAKIIRTFHDQDAFVVFELIRVCSTLD 75
Query: 237 FVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296
V + VF+ +S +V ++ ++I FV SG+ D + L +I +V P+ I SVL
Sbjct: 76 SVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLK 135
Query: 297 AC-------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
AC + L G G+ V ++++YG+ G + ++K+F MP ++ V+ VM
Sbjct: 136 ACDLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVM 195
Query: 350 ISVY 353
I+ Y
Sbjct: 196 INCY 199
>gi|449442521|ref|XP_004139030.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like isoform 1 [Cucumis sativus]
gi|449442523|ref|XP_004139031.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like isoform 2 [Cucumis sativus]
Length = 517
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 94/381 (24%), Positives = 167/381 (43%), Gaps = 79/381 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNV 42
G+++HAHLI G F+ + LL + +WTS++ +
Sbjct: 82 GLEIHAHLIKSGHLSDIFIQNSLLHFYILDGDVSSASLIFDSIPDPDVVSWTSIISGLSK 141
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
LG+ +E ++ F M VRP+ ACS L+ ++GK ++
Sbjct: 142 LGFEKEALSKFLSM---NVRPNSTTLVTALSACSSLRCLKLGKAIHGL------------ 186
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
RM + +++ ++ N+L+DFY +C YL+ + F K+ ++D+V
Sbjct: 187 ------------RMRTLN------EENVILENALLDFYVRCAYLRSAENLFEKMPKRDVV 228
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW M+ GYA G EE + M + + PN +L VL+AC+ + + LG+ +H
Sbjct: 229 SWTTMIGGYAQSGLCEEAVRVFQNMVHVGEAI-PNEATLVNVLSACSSISALHLGQWVHS 287
Query: 223 YVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y+ H I++ CG + + +F + +D+V W++IIS +G
Sbjct: 288 YINSRHDVIIDGNVGNALINMYVKCGNMEMAILIFKAIEHKDIVSWSTIISGLAMNGLGK 347
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL---GTGSFVWN---------AL 318
A L ++V V P+ +T + +L AC + QG+ V+N +
Sbjct: 348 QAFVLFSLMLVHGVSPDDITFLGLLSACSHGGLINQGMMVFEAMKDVYNISPQMRHYACM 407
Query: 319 IDMYGRCGAIQKSRKIFVLMP 339
+DMYG+ G + ++ MP
Sbjct: 408 VDMYGKAGLLDEAEAFIKEMP 428
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 88/331 (26%), Positives = 160/331 (48%), Gaps = 59/331 (17%)
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
+ E + L+ M+ +HF KAC L + G +++ ++I
Sbjct: 43 FPENGLFLYNQMLRYPSSHNHFTFTYALKACCFLHQTQKGLEIHAHLI------------ 90
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
K G + D + NSL+ FY + + F I D+VSW
Sbjct: 91 -------KSGHL-----------SDIFIQNSLLHFYILDGDVSSASLIFDSIPDPDVVSW 132
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
++++G + GF +E + + + +++PN+ +L L+AC+ ++ +KLGKAIHG
Sbjct: 133 TSIISGLSKLGFEKEALS-----KFLSMNVRPNSTTLVTALSACSSLRCLKLGKAIHGLR 187
Query: 225 LR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
+R ++ L A C ++ + ++F ++ RDVV W ++I + +SG +A+
Sbjct: 188 MRTLNEENVILENALLDFYVRCAYLRSAENLFEKMPKRDVVSWTTMIGGYAQSGLCEEAV 247
Query: 274 DLLRDVI-VANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------------VWNALID 320
+ ++++ V PN T+V+VL AC ++AL G S+ V NALI+
Sbjct: 248 RVFQNMVHVGEAIPNEATLVNVLSACSSISALHLGQWVHSYINSRHDVIIDGNVGNALIN 307
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
MY +CG ++ + IF + HK++VSW+ +IS
Sbjct: 308 MYVKCGNMEMAILIFKAIEHKDIVSWSTIIS 338
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 104/234 (44%), Gaps = 32/234 (13%)
Query: 148 VSHCKFSKIKQKDLVS-----WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLS 202
+S +F++I K L + +N +L F E L ++M ++ N + +
Sbjct: 10 ISIAQFTQIHAKLLTNPKPHIFNPLLGSLVNSIFPENGLFLYNQM--LRYPSSHNHFTFT 67
Query: 203 GVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTR 251
L AC + + G IH ++++ +H G V + +F+ +
Sbjct: 68 YALKACCFLHQTQKGLEIHAHLIKSGHLSDIFIQNSLLHFYILDGDVSSASLIFDSIPDP 127
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----LKLAALPQ 306
DVV W SIIS + G +AL + NV+PN+ T+V+ L AC LKL
Sbjct: 128 DVVSWTSIISGLSKLGFEKEALS---KFLSMNVRPNSTTLVTALSACSSLRCLKLGKAIH 184
Query: 307 GLGTGSF------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
GL + + NAL+D Y RC ++ + +F MP +++VSW MI Y
Sbjct: 185 GLRMRTLNEENVILENALLDFYVRCAYLRSAENLFEKMPKRDVVSWTTMIGGYA 238
>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1028
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 105/436 (24%), Positives = 182/436 (41%), Gaps = 89/436 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+E G Q+H +I G+E ++ G L++++ WT +
Sbjct: 176 VEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSG 235
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKV---YKACSELKDYRV------GKDVYDY 90
Y G EE V +F M +G RPDH V Y + +LKD R+ DV +
Sbjct: 236 YVKAGLPEEAVIVFERMRGEGHRPDHLAFVTVINTYISLGKLKDARLLFGEMPSPDVVAW 295
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITS------------GLFEEMD----------- 127
+ I G + ++ F+ + + S G+ +D
Sbjct: 296 NVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIK 355
Query: 128 ----QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNL 183
+ V +SL+ Y+KC ++ + F +++++ V WNAM+ GYA G +V L
Sbjct: 356 LGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMEL 415
Query: 184 LDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLS 232
M+M + + + + +L+ CA +++G H +++ + +
Sbjct: 416 F--MDMKSSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMY 473
Query: 233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
CG + + +F + RD V WN+II +V+ +A DL + + + +
Sbjct: 474 AKCGALEDARQIFEHMCDRDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLA 533
Query: 293 SVLPACLKLAALPQG---------------LGTGSFVWNALIDMYGRCGAIQKSRKIFVL 337
S L AC + L QG L TGS +LIDMY +CG I+ +RK+F
Sbjct: 534 STLKACTNVHGLYQGKQVHCLSVKCGLDRVLHTGS----SLIDMYSKCGIIEDARKVFSS 589
Query: 338 MPHKNLVSWNVMISVY 353
MP ++VS N +I+ Y
Sbjct: 590 MPEWSVVSMNALIAGY 605
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/431 (22%), Positives = 181/431 (41%), Gaps = 80/431 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN--------------------WTSMMGMY 40
+ +G VH+ ++ G++ LG+ +++++ W SM+ MY
Sbjct: 76 LRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFNSLEKDVTAWNSMLSMY 135
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+ +G +++ F + + + P+ F V + + G+ ++ MI + E N+
Sbjct: 136 SSIGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLERNS 195
Query: 101 CVKRPLLDLFIKCGRME------------------------ITSGLFEEM---------- 126
L+D++ KC R+ + +GL EE
Sbjct: 196 YCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMRGE 255
Query: 127 --DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLL 184
D L ++I+ Y LK + F ++ D+V+WN M++G+ G E+ +
Sbjct: 256 GHRPDHLAFVTVINTYISLGKLKDARLLFGEMPSPDVVAWNVMISGHGKRGC--EIVAIE 313
Query: 185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLST 233
+ M ++ ++ +L VL+A V + LG +H YV + + +
Sbjct: 314 YFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYS 373
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
C + + VF L R+ V+WN++I + +G+ ++L D+ + + T S
Sbjct: 374 KCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTS 433
Query: 294 VLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
+L C L G L FV NAL+DMY +CGA++ +R+IF M ++
Sbjct: 434 LLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMCDRD 493
Query: 343 LVSWNVMISVY 353
VSWN +I Y
Sbjct: 494 NVSWNTIIGGY 504
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/401 (24%), Positives = 181/401 (45%), Gaps = 81/401 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E+G Q H+ +I + F+G+ L++++ +W +++G
Sbjct: 444 LEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMCDRDNVSWNTIIGG 503
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y E +LF M G+ D KAC+ + GK V+
Sbjct: 504 YVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQVH----------- 552
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
C L +KCG +D+ +SLID Y+KC ++ + FS + +
Sbjct: 553 -C-------LSVKCG-----------LDRVLHTGSSLIDMYSKCGIIEDARKVFSSMPEW 593
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+VS NA++AGY+ E V EM+ + P+ I+ + ++ AC + + + LG
Sbjct: 594 SVVSMNALIAGYSQNNLEEAVVLF---QEMLTKGVNPSEITFATIVEACHKPESLTLGTQ 650
Query: 220 IHGYVLR-------HHIHLSTACGFVICS------CSVFNQLST-RDVVVWNSIISAFVR 265
HG +++ ++ +S G + S C++F++LS+ + +V+W ++S +
Sbjct: 651 FHGQIIKWGFSSEGEYLGISL-LGLYMNSRRMAEACALFSELSSPKSIVLWTGMMSGHSQ 709
Query: 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW---------- 315
+G +AL +++ P+ T V+VL C L++L +G S ++
Sbjct: 710 NGFYEEALKFYKEMRHDGALPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELT 769
Query: 316 -NALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISVYG 354
N LIDMY +CG ++ S ++F M + N+VSWN +I+ Y
Sbjct: 770 SNTLIDMYAKCGDMKSSSQVFDEMRRRSNVVSWNSLINGYA 810
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 87/373 (23%), Positives = 150/373 (40%), Gaps = 76/373 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC----------------NWTSMMGMYNVLGY-- 45
G QVH + CG++ GS L++++ W+ + + GY
Sbjct: 548 GKQVHCLSVKCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALIAGYSQ 607
Query: 46 --YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA-CV 102
EE V LF M+ KGV P + +AC + + +G + +I F +
Sbjct: 608 NNLEEAVVLFQEMLTKGVNPSEITFATIVEACHKPESLTLGTQFHGQIIKWGFSSEGEYL 667
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
LL L++ RM LF E+ K +V
Sbjct: 668 GISLLGLYMNSRRMAEACALFSELSS-----------------------------PKSIV 698
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
W M++G++ GF EE EM P+ + VL C+ + ++ G+AIH
Sbjct: 699 LWTGMMSGHSQNGFYEEALKFYKEMR--HDGALPDQATFVTVLRVCSVLSSLREGRAIHS 756
Query: 223 YV--LRHH---------IHLSTACGFVICSCSVFNQLSTR-DVVVWNSIISAFVRSGQVV 270
+ L H I + CG + S VF+++ R +VV WNS+I+ + ++G
Sbjct: 757 LIFHLAHDLDELTSNTLIDMYAKCGDMKSSSQVFDEMRRRSNVVSWNSLINGYAKNGYAE 816
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----LGTGSFVWNA-------L 318
DAL + + +++ P+ +T + VL AC + G + G + A +
Sbjct: 817 DALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACM 876
Query: 319 IDMYGRCGAIQKS 331
+D+ GR G +Q++
Sbjct: 877 VDLLGRWGYLQEA 889
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 102/243 (41%), Gaps = 54/243 (22%)
Query: 1 MELGIQVHAHLIVCGVEL-CAFLGSQLLEVFCN----------------------WTSMM 37
+ LG Q H +I G +LG LL ++ N WT MM
Sbjct: 645 LTLGTQFHGQIIKWGFSSEGEYLGISLLGLYMNSRRMAEACALFSELSSPKSIVLWTGMM 704
Query: 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
++ G+YEE + + M G PD V + CS L R G+ ++ + + +
Sbjct: 705 SGHSQNGFYEEALKFYKEMRHDGALPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHD 764
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
+ L+D++ KCG M+ +S +F+EM +
Sbjct: 765 LDELTSNTLIDMYAKCGDMKSSSQVFDEMR-----------------------------R 795
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+ ++VSWN+++ GYA G+ E+ + D M Q+ + P+ I+ GVL AC+ V G
Sbjct: 796 RSNVVSWNSLINGYAKNGYAEDALKIFDSMR--QSHIMPDEITFLGVLTACSHAGKVSDG 853
Query: 218 KAI 220
+ I
Sbjct: 854 RKI 856
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 124/259 (47%), Gaps = 38/259 (14%)
Query: 107 LDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNA 166
L L ++ G+ + L +D + + N+++D YAKC + + +F+ + +KD+ +WN+
Sbjct: 72 LALALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFNSL-EKDVTAWNS 130
Query: 167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR 226
ML+ Y+ G +V L + + + + PN + S VL+ A+ V+ G+ IH +++
Sbjct: 131 MLSMYSSIGQPGKV--LRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIK 188
Query: 227 HHIHLSTACG------FVIC-----SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDL 275
+ ++ CG + C + VF+ + + V W + S +V++G +A+ +
Sbjct: 189 MGLERNSYCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIV 248
Query: 276 LRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIF 335
+ +P+ + V+V I+ Y G ++ +R +F
Sbjct: 249 FERMRGEGHRPDHLAFVTV------------------------INTYISLGKLKDARLLF 284
Query: 336 VLMPHKNLVSWNVMISVYG 354
MP ++V+WNVMIS +G
Sbjct: 285 GEMPSPDVVAWNVMISGHG 303
>gi|356531824|ref|XP_003534476.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
chloroplastic-like [Glycine max]
Length = 682
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 162/344 (47%), Gaps = 53/344 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ + E++ M+++GV+P+ V V E+ R+G++ + Y++
Sbjct: 285 WGAMLAGFAHNRLQREVLEYVRWMVEEGVKPNSVVMTIVIPVIGEVCARRLGQEFHAYVV 344
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
K + V +SLID Y KC + +
Sbjct: 345 KTK-----------------------------SYSKLVPVQSSLIDMYCKCGDMISARRV 375
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F K++++V W A+++GYA G E+ L + M Q +P+ ++L+ VL CAQ++
Sbjct: 376 FYGSKERNVVCWTALMSGYAANGKLEQA--LRSTIWMQQEGFRPDVVTLATVLPVCAQLR 433
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ GK IH Y L+H + + + CG V S +F+ + R+V+ W ++I
Sbjct: 434 ALEQGKQIHAYALKHWFLPNVSVASSLMTMYSKCGVVEYSRRLFDNMEQRNVISWTAMID 493
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----LKLAA------LPQGLGT 310
+++ +G + +AL ++R + ++ +P++V I +L C +KL L + +
Sbjct: 494 SYIENGYLCEALGVIRSMQLSKHRPDSVAIGRMLSVCGERKLVKLGKEIHGQILKRDFTS 553
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
FV LI+MYG G I K+ +F +P K ++W +I YG
Sbjct: 554 VHFVSAELINMYGFFGDINKANLVFNAVPVKGSMTWTALIRAYG 597
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 93/396 (23%), Positives = 177/396 (44%), Gaps = 78/396 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G +VH H+ + G+E +FL ++L+ ++ W +++ V
Sbjct: 132 GREVHTHIRINGLENNSFLRTKLVHMYTACGSLEDAQKLFDGLPCESVYPWNALLRGTVV 191
Query: 43 LG--YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G Y +++ + M GV + + V K+ + + + G + +I N
Sbjct: 192 SGKRQYIDVLKTYTEMRALGVELNVYSFSNVIKSFAGARAFSQGLKTHGLLIKNGLVDNY 251
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
++ L+D++ KCG++ + +FEE I ++D
Sbjct: 252 ILRTSLIDMYFKCGKVRLACRVFEE------------------------------IPERD 281
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+V W AMLAG+A + EV + M++ ++PN++ ++ V+ +V +LG+
Sbjct: 282 VVVWGAMLAGFAHNRLQREVLEYV--RWMVEEGVKPNSVVMTIVIPVIGEVCARRLGQEF 339
Query: 221 HGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
H YV++ I + CG +I + VF R+VV W +++S + +G+
Sbjct: 340 HAYVVKTKSYSKLVPVQSSLIDMYCKCGDMISARRVFYGSKERNVVCWTALMSGYAANGK 399
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------VWNA 317
+ AL + +P+ VT+ +VLP C +L AL QG ++ V ++
Sbjct: 400 LEQALRSTIWMQQEGFRPDVVTLATVLPVCAQLRALEQGKQIHAYALKHWFLPNVSVASS 459
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L+ MY +CG ++ SR++F M +N++SW MI Y
Sbjct: 460 LMTMYSKCGVVEYSRRLFDNMEQRNVISWTAMIDSY 495
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 145/331 (43%), Gaps = 53/331 (16%)
Query: 47 EEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPL 106
+E + + + +G+ D V AC K G++V+ ++ E N+ ++ L
Sbjct: 95 KEALTILDYVDQRGIPVDATTFSSVVAACIRAKSLPQGREVHTHIRINGLENNSFLRTKL 154
Query: 107 LDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNA 166
+ ++ CG +E LF+ + C+ + WNA
Sbjct: 155 VHMYTACGSLEDAQKLFDGLP-----------------------CE-------SVYPWNA 184
Query: 167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG---- 222
+L G + G R+ + L EM ++ N S S V+ + A + G HG
Sbjct: 185 LLRGTVVSGKRQYIDVLKTYTEMRALGVELNVYSFSNVIKSFAGARAFSQGLKTHGLLIK 244
Query: 223 ------YVLRHH-IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDL 275
Y+LR I + CG V +C VF ++ RDVVVW ++++ F + + L+
Sbjct: 245 NGLVDNYILRTSLIDMYFKCGKVRLACRVFEEIPERDVVVWGAMLAGFAHNRLQREVLEY 304
Query: 276 LRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGSF-----VWNALIDMYG 323
+R ++ VKPN+V + V+P ++ A G + T S+ V ++LIDMY
Sbjct: 305 VRWMVEEGVKPNSVVMTIVIPVIGEVCARRLGQEFHAYVVKTKSYSKLVPVQSSLIDMYC 364
Query: 324 RCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+CG + +R++F +N+V W ++S Y
Sbjct: 365 KCGDMISARRVFYGSKERNVVCWTALMSGYA 395
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 133/301 (44%), Gaps = 50/301 (16%)
Query: 14 CGVELCA---FLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPK 70
CG + A F GS+ V C WT++M Y G E+ + M +G RPD
Sbjct: 366 CGDMISARRVFYGSKERNVVC-WTALMSGYAANGKLEQALRSTIWMQQEGFRPDVVTLAT 424
Query: 71 VYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDF 130
V C++L+ GK ++ Y + F N V
Sbjct: 425 VLPVCAQLRALEQGKQIHAYALKHWFLPNVSVA--------------------------- 457
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
+SL+ Y+KC ++ S F ++Q++++SW AM+ Y G+ E ++ M++
Sbjct: 458 ---SSLMTMYSKCGVVEYSRRLFDNMEQRNVISWTAMIDSYIENGYLCEALGVIRSMQL- 513
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH---HIHLSTA--------CGFVI 239
+ +P+++++ +L+ C + K VKLGK IHG +L+ +H +A G +
Sbjct: 514 -SKHRPDSVAIGRMLSVCGERKLVKLGKEIHGQILKRDFTSVHFVSAELINMYGFFGDIN 572
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ VFN + + + W ++I A+ + DA++L + PN T ++L C
Sbjct: 573 KANLVFNAVPVKGSMTWTALIRAYGYNELYQDAVNLFDQM---RYSPNHFTFEAILSICD 629
Query: 300 K 300
K
Sbjct: 630 K 630
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------L 308
I F R ++ +AL +L V + + T SV+ AC++ +LPQG L
Sbjct: 85 IKRFARQNKLKEALTILDYVDQRGIPVDATTFSSVVAACIRAKSLPQGREVHTHIRINGL 144
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
SF+ L+ MY CG+++ ++K+F +P +++ WN ++
Sbjct: 145 ENNSFLRTKLVHMYTACGSLEDAQKLFDGLPCESVYPWNALL 186
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/201 (20%), Positives = 78/201 (38%), Gaps = 35/201 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ Y GY E + + M RPD ++ C E K ++GK+++ +
Sbjct: 487 SWTAMIDSYIENGYLCEALGVIRSMQLSKHRPDSVAIGRMLSVCGERKLVKLGKEIHGQI 546
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F V L++++ G F ++++ LV
Sbjct: 547 LKRDFTSVHFVSAELINMY----------GFFGDINKANLV------------------- 577
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ + K ++W A++ Y ++ NL D+M PN + +L+ C +
Sbjct: 578 -FNAVPVKGSMTWTALIRAYGYNELYQDAVNLFDQMR-----YSPNHFTFEAILSICDKA 631
Query: 212 KGVKLGKAIHGYVLRHHIHLS 232
V I + R+ I S
Sbjct: 632 GFVDDACRIFNSMPRYKIEAS 652
>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
Length = 605
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 94/332 (28%), Positives = 160/332 (48%), Gaps = 55/332 (16%)
Query: 46 YEEIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
+E+ + +F M+ G R D V A +EL++ ++G +
Sbjct: 11 FEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQI----------------- 53
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
L L IKCG S L LI ++KC ++++ F +I++KDL+S
Sbjct: 54 --LCLAIKCGFYSHVSLL-----------TGLISLFSKCGEVEIARLLFGEIRKKDLISC 100
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
NAM++G+ G E+ L E+ + + + ++ ++ G++ + L IHG+
Sbjct: 101 NAMISGFTCNGETEDSVRLFKEL--LSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFC 158
Query: 225 LR----HHIHLSTACGFVICSCS-------VFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
++ H +STA V C + +F++ + + + WN++IS ++G A+
Sbjct: 159 VKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAI 218
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMY 322
L + + NV PN VT+ S+L AC ++ AL G + +V ALIDMY
Sbjct: 219 SLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMY 278
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+CG+I +R++F LMP KN V+WN MIS YG
Sbjct: 279 AKCGSITVARELFDLMPEKNEVTWNAMISGYG 310
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 117/231 (50%), Gaps = 25/231 (10%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V+ +L Y + + + F + +K L SWNAM++G G + +L M+ +
Sbjct: 169 VSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQ--K 226
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVIC 240
++ PN ++++ +L+ACAQ+ + LG+ +H + ++++STA CG +
Sbjct: 227 NNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITV 286
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ +F+ + ++ V WN++IS + G +AL L D++ ++VKP +T +SVL AC
Sbjct: 287 ARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSH 346
Query: 301 LAALPQGLG-----TGSFVWNAL-------IDMYGRCGAIQKSRKIFVLMP 339
+ +G G F + L +D+ GR G ++K+ + MP
Sbjct: 347 AGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMP 397
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 109/272 (40%), Gaps = 54/272 (19%)
Query: 28 EVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDV 87
+ +W +M+ G + ++LF M V P+ + AC+++ +G+ V
Sbjct: 196 KTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWV 255
Query: 88 YDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147
+ + S +FE N V+ +LID YAKC +
Sbjct: 256 HSLIKSNRFESNV------------------------------YVSTALIDMYAKCGSIT 285
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
V+ F + +K+ V+WNAM++GY L G +E L +M+ + ++P ++ VL A
Sbjct: 286 VARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLF--YDMLSSSVKPTGLTFLSVLYA 343
Query: 208 CAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
C+ VK G I + + H C + R+G
Sbjct: 344 CSHAGLVKEGDGIF-HTMVHDFGFEPLAEHYACMVDILG------------------RAG 384
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
Q+ AL+ ++ + V+P ++L AC+
Sbjct: 385 QLKKALEFIKAM---PVEPGPPVWGALLGACM 413
>gi|224066771|ref|XP_002302207.1| predicted protein [Populus trichocarpa]
gi|222843933|gb|EEE81480.1| predicted protein [Populus trichocarpa]
Length = 709
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 161/343 (46%), Gaps = 27/343 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W ++ Y +G E V +F+ M +RP + ACS+++ + G ++
Sbjct: 226 TWNIIVRRYLEVGDENEAVVMFFKMFRAKLRPLSYTFSNALVACSDMRAVKEGMQIHGVA 285
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFE-EMDQDFLVNNSLIDFYAKCRYLKVSH 150
I FE V L+D+++KCG +E +F+ +D + S++ YA ++ +
Sbjct: 286 TKINFEEEEVVLSSLIDMYVKCGEIESARRVFDLPGSRDLISWTSMVSAYAMSGRMREAR 345
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ ++++VS+NA+LAGY EE + + M +T + I+ +L C+
Sbjct: 346 ELFDEMPERNMVSYNALLAGYIRSLQWEEALDFV--YLMCRTTENIDHITFQLMLNVCSG 403
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVI----CSCSV-------FNQL-STRDVVVWNS 258
+ V +GK +HG++ RH +T G + C C F+Q+ +RD V WN
Sbjct: 404 LSDVDMGKQVHGFIYRHGWLSNTVIGNALLDMYCKCGNLRSAGVWFHQMKQSRDSVSWNV 463
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF----- 313
+++++ R A+ + R+ + KP+ ++L AC AL QG F
Sbjct: 464 LLTSYARRQMSEQAMSIFRE-MQWETKPHKFIFATLLAACANTFALDQGKQIHGFMIRNG 522
Query: 314 ------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ AL+DMY +C ++ + +F ++LV WN MI
Sbjct: 523 YDIDTVIAGALLDMYSKCRCLEYALIVFREADKRDLVLWNSMI 565
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 121/247 (48%), Gaps = 25/247 (10%)
Query: 130 FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
FL+N + ID Y KCR L+ + F ++ Q+D SWNAM+ E+ + +M
Sbjct: 93 FLLNRA-IDTYGKCRCLEDAKELFDEMPQRDGGSWNAMIRACLQCVRPEKALSYFGDMH- 150
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFV 238
+ + N ++ S L AC V + L + IHG ++++ + + CG +
Sbjct: 151 -KQGVYANEVTFSSALRACGDVLELCLSRQIHGLIVKYGFCGNVIVGSSLVDVYGKCGAM 209
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
S +F+++ + V WN I+ ++ G +A+ + + A ++P + T + L AC
Sbjct: 210 SESRRIFDEIENPNNVTWNIIVRRYLEVGDENEAVVMFFKMFRAKLRPLSYTFSNALVAC 269
Query: 299 LKLAALPQGLG-----------TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
+ A+ +G+ V ++LIDMY +CG I+ +R++F L ++L+SW
Sbjct: 270 SDMRAVKEGMQIHGVATKINFEEEEVVLSSLIDMYVKCGEIESARRVFDLPGSRDLISWT 329
Query: 348 VMISVYG 354
M+S Y
Sbjct: 330 SMVSAYA 336
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 121/282 (42%), Gaps = 52/282 (18%)
Query: 37 MGMYNVL--GY-----YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
M YN L GY +EE ++ YLM DH + CS L D +GK V+
Sbjct: 356 MVSYNALLAGYIRSLQWEEALDFVYLMCRTTENIDHITFQLMLNVCSGLSDVDMGKQVHG 415
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
++ + N ++ N+L+D Y KC L+ +
Sbjct: 416 FIYRHGWLSNT------------------------------VIGNALLDMYCKCGNLRSA 445
Query: 150 HCKFSKIKQ-KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
F ++KQ +D VSWN +L YA E+ ++ EM Q + +P+ + +LAAC
Sbjct: 446 GVWFHQMKQSRDSVSWNVLLTSYARRQMSEQAMSIFREM---QWETKPHKFIFATLLAAC 502
Query: 209 AQVKGVKLGKAIHGYVLRHHIHLSTACG------FVICSC-----SVFNQLSTRDVVVWN 257
A + GK IHG+++R+ + T + C C VF + RD+V+WN
Sbjct: 503 ANTFALDQGKQIHGFMIRNGYDIDTVIAGALLDMYSKCRCLEYALIVFREADKRDLVLWN 562
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
S+I G+ AL L + KP+ VT +L AC+
Sbjct: 563 SMILGCCHLGRGKLALRLFGFMEEEGTKPDNVTFQGILLACV 604
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 78/362 (21%), Positives = 148/362 (40%), Gaps = 86/362 (23%)
Query: 47 EEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPL 106
E+ ++ F M +GV + +AC ++ + + + ++ ++ F GN V L
Sbjct: 140 EKALSYFGDMHKQGVYANEVTFSSALRACGDVLELCLSRQIHGLIVKYGFCGNVIVGSSL 199
Query: 107 LDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNA 166
+D++ KCG M + +F+E I+ + V+WN
Sbjct: 200 VDVYGKCGAMSESRRIFDE------------------------------IENPNNVTWNI 229
Query: 167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG---- 222
++ Y G E + +M + ++P + + S L AC+ ++ VK G IHG
Sbjct: 230 IVRRYLEVGDENEAVVMF--FKMFRAKLRPLSYTFSNALVACSDMRAVKEGMQIHGVATK 287
Query: 223 -------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDL 275
VL I + CG + + VF+ +RD++ W S++SA+ SG++ +A +L
Sbjct: 288 INFEEEEVVLSSLIDMYVKCGEIESARRVFDLPGSRDLISWTSMVSAYAMSGRMREAREL 347
Query: 276 LRDVIVANV-------------------------------KPNTVTIVSVLPACLKLAAL 304
++ N+ + +T +L C L+ +
Sbjct: 348 FDEMPERNMVSYNALLAGYIRSLQWEEALDFVYLMCRTTENIDHITFQLMLNVCSGLSDV 407
Query: 305 PQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIFVLMPH-KNLVSWNVMISV 352
G F++ NAL+DMY +CG ++ + F M ++ VSWNV+++
Sbjct: 408 DMGKQVHGFIYRHGWLSNTVIGNALLDMYCKCGNLRSAGVWFHQMKQSRDSVSWNVLLTS 467
Query: 353 YG 354
Y
Sbjct: 468 YA 469
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 20/163 (12%)
Query: 202 SGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
S +L AC L +AI Y C + + +F+++ RD WN++I
Sbjct: 81 SQLLGACPTPPTFLLNRAIDTY---------GKCRCLEDAKELFDEMPQRDGGSWNAMIR 131
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC---LKLAALPQ--------GLGT 310
A ++ + AL D+ V N VT S L AC L+L Q G
Sbjct: 132 ACLQCVRPEKALSYFGDMHKQGVYANEVTFSSALRACGDVLELCLSRQIHGLIVKYGFCG 191
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V ++L+D+YG+CGA+ +SR+IF + + N V+WN+++ Y
Sbjct: 192 NVIVGSSLVDVYGKCGAMSESRRIFDEIENPNNVTWNIIVRRY 234
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 94/240 (39%), Gaps = 55/240 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC----------------------NWTSMMG 38
+++G QVH + G +G+ LL+++C +W ++
Sbjct: 407 VDMGKQVHGFIYRHGWLSNTVIGNALLDMYCKCGNLRSAGVWFHQMKQSRDSVSWNVLLT 466
Query: 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
Y E+ +++F M +P F+ + AC+ GK ++ +MI +
Sbjct: 467 SYARRQMSEQAMSIFREM-QWETKPHKFIFATLLAACANTFALDQGKQIHGFMIRNGY-- 523
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
D D ++ +L+D Y+KCR L+ + F + +
Sbjct: 524 ----------------------------DIDTVIAGALLDMYSKCRCLEYALIVFREADK 555
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+DLV WN+M+ G G + L ME + +P+ ++ G+L AC V L +
Sbjct: 556 RDLVLWNSMILGCCHLGRGKLALRLFGFME--EEGTKPDNVTFQGILLACVYEGHVDLAR 613
>gi|223635626|sp|O65543.2|PP343_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g31070, mitochondrial; Flags: Precursor
Length = 624
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 136/254 (53%), Gaps = 25/254 (9%)
Query: 124 EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNL 183
E M + L++ +L+D Y K + F +++ K+ VSW AM++G E +L
Sbjct: 190 ERMQESVLLSTALVDMYLKFDDHAAAFHVFDQMEVKNEVSWTAMISGCVANQNYEMGVDL 249
Query: 184 LDEMEMIQTDMQPNTISLSGVLAACAQVK-GVKLGKAIHGYVLRHHIH----LSTA---- 234
M+ + +++PN ++L VL AC ++ G L K IHG+ RH H L+ A
Sbjct: 250 FRAMQ--RENLRPNRVTLLSVLPACVELNYGSSLVKEIHGFSFRHGCHADERLTAAFMTM 307
Query: 235 ---CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI 291
CG V S +F RDVV+W+S+IS + +G + ++LL + ++ N+VT+
Sbjct: 308 YCRCGNVSLSRVLFETSKVRDVVMWSSMISGYAETGDCSEVMNLLNQMRKEGIEANSVTL 367
Query: 292 VSVLPAC-----LKLAA------LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340
++++ AC L A+ L G + + NALIDMY +CG++ +R++F +
Sbjct: 368 LAIVSACTNSTLLSFASTVHSQILKCGFMSHILLGNALIDMYAKCGSLSAAREVFYELTE 427
Query: 341 KNLVSWNVMISVYG 354
K+LVSW+ MI+ YG
Sbjct: 428 KDLVSWSSMINAYG 441
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/345 (22%), Positives = 154/345 (44%), Gaps = 56/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK-DYRVGKDVYDY 90
+WT+M+ YE V+LF M + +RP+ V AC EL + K+++ +
Sbjct: 229 SWTAMISGCVANQNYEMGVDLFRAMQRENLRPNRVTLLSVLPACVELNYGSSLVKEIHGF 288
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ + + ++ +CG + ++ LFE
Sbjct: 289 SFRHGCHADERLTAAFMTMYCRCGNVSLSRVLFETS------------------------ 324
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
K +D+V W++M++GYA G EV NLL++M + ++ N+++L +++AC
Sbjct: 325 ------KVRDVVMWSSMISGYAETGDCSEVMNLLNQMR--KEGIEANSVTLLAIVSACTN 376
Query: 211 VKGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ +H +L+ HI L A CG + + VF +L+ +D+V W+S+
Sbjct: 377 STLLSFASTVHSQILKCGFMSHILLGNALIDMYAKCGSLSAAREVFYELTEKDLVSWSSM 436
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC--LKLAALPQGLGTGSFVWN- 316
I+A+ G +AL++ + +I + + + +++L AC L Q + T + ++
Sbjct: 437 INAYGLHGHGSEALEIFKGMIKGGHEVDDMAFLAILSACNHAGLVEEAQTIFTQAGKYHM 496
Query: 317 --------ALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMISV 352
I++ GR G I + ++ + MP K W+ ++S
Sbjct: 497 PVTLEHYACYINLLGRFGKIDDAFEVTINMPMKPSARIWSSLLSA 541
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 105/266 (39%), Gaps = 55/266 (20%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W+SM+ Y G E++NL M +G+ + + AC+ V+ ++
Sbjct: 332 WSSMISGYAETGDCSEVMNLLNQMRKEGIEANSVTLLAIVSACTNSTLLSFASTVHSQIL 391
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
KCG M L+ N+LID YAKC L +
Sbjct: 392 -------------------KCGFM-----------SHILLGNALIDMYAKCGSLSAAREV 421
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ +KDLVSW++M+ Y L G E + MI+ + + ++ +L+AC
Sbjct: 422 FYELTEKDLVSWSSMINAYGLHGHGSEALEIFK--GMIKGGHEVDDMAFLAILSACNHAG 479
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
V+ + I ++H+ ++ + + I+ R G++ DA
Sbjct: 480 LVEEAQTIFTQAGKYHMPVT--------------------LEHYACYINLLGRFGKIDDA 519
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPAC 298
++ I +KP+ S+L AC
Sbjct: 520 FEV---TINMPMKPSARIWSSLLSAC 542
>gi|255541480|ref|XP_002511804.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548984|gb|EEF50473.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 607
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 156/344 (45%), Gaps = 54/344 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT+M+ Y+ G + F M +GV + F P + AC + D+ G V+ ++
Sbjct: 189 WTAMLTGYSHNGDGFRAIKCFRDMRAEGVESNQFTFPSILTACGAVSDHVFGVQVHGCIV 248
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F N V ++L+D YAKCR L ++
Sbjct: 249 RSGFGAN------------------------------IFVQSALVDMYAKCRDLNSANRV 278
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
++ D+VSWN+M+ G GF E +L +EM D++ + + VL + A +K
Sbjct: 279 LENMEVNDVVSWNSMIVGCVREGFEAEALSLFNEMHA--RDIKIDDYTYPSVLNSFASMK 336
Query: 213 GVKLGKAIH---------GYVLRHH--IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ K+ H Y L ++ + + G + + +VFNQ+ +DVV W S+++
Sbjct: 337 DIQSAKSAHCLIIKTGFGAYTLVNNALVDMYAKQGNLDYAFTVFNQMPDKDVVSWTSLVT 396
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLGT 310
+ +G DA+ L D+ +A V P+ + + SVL AC +L L GL +
Sbjct: 397 GYSYNGSYEDAIKLFCDMRIAGVCPDQIVLASVLSACAELTVTEFGQQVHATILKSGLCS 456
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ N+L+ MY +CG I+ + +F M ++++SW +I Y
Sbjct: 457 SLSIDNSLVTMYAKCGGIEDANYVFDSMQIRDVISWTALIVGYA 500
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 148/337 (43%), Gaps = 64/337 (18%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYN 41
G+QVH ++ G F+ S L++++ +W SM+
Sbjct: 239 FGVQVHGCIVRSGFGANIFVQSALVDMYAKCRDLNSANRVLENMEVNDVVSWNSMIVGCV 298
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G+ E ++LF M + ++ D + P V + + +KD + K + C
Sbjct: 299 REGFEAEALSLFNEMHARDIKIDDYTYPSVLNSFASMKDIQSAKSAH------------C 346
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
L IK G T LVNN+L+D YAK L + F+++ KD+
Sbjct: 347 -------LIIKTGFGAYT-----------LVNNALVDMYAKQGNLDYAFTVFNQMPDKDV 388
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSW +++ GY+ G E+ L +M + + P+ I L+ VL+ACA++ + G+ +H
Sbjct: 389 VSWTSLVTGYSYNGSYEDAIKLFCDMRI--AGVCPDQIVLASVLSACAELTVTEFGQQVH 446
Query: 222 GYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
+L+ + + CG + + VF+ + RDV+ W ++I + ++G+
Sbjct: 447 ATILKSGLCSSLSIDNSLVTMYAKCGGIEDANYVFDSMQIRDVISWTALIVGYAQNGRGK 506
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
D+L +I KP+ +T + +L AC + G
Sbjct: 507 DSLHFYDQMIATGTKPDFITFIGLLFACSHTGLVEDG 543
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 144/343 (41%), Gaps = 53/343 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W+S++ + + E L+ M +G RP+H+ + + CS + G+ ++ Y I
Sbjct: 87 WSSLISGFCKYEFDIEAFELYLQMQFEGQRPNHYTLGSILRLCSRTGFLQKGERIHGYAI 146
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ + N V L+DL+ KC + +FE +V +S
Sbjct: 147 KTRLDANVFVVTSLVDLYAKCECISEAEYIFE------MVADS----------------- 183
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
K+ +W AML GY+ G +M ++ N + +L AC V
Sbjct: 184 ------KNHATWTAMLTGYSHNGDGFRAIKCFRDMRA--EGVESNQFTFPSILTACGAVS 235
Query: 213 GVKLGKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIIS 261
G +HG ++R +I + +A C + + V + DVV WNS+I
Sbjct: 236 DHVFGVQVHGCIVRSGFGANIFVQSALVDMYAKCRDLNSANRVLENMEVNDVVSWNSMIV 295
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGT 310
VR G +AL L ++ ++K + T SVL + + + G G
Sbjct: 296 GCVREGFEAEALSLFNEMHARDIKIDDYTYPSVLNSFASMKDIQSAKSAHCLIIKTGFGA 355
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ V NAL+DMY + G + + +F MP K++VSW +++ Y
Sbjct: 356 YTLVNNALVDMYAKQGNLDYAFTVFNQMPDKDVVSWTSLVTGY 398
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 134/289 (46%), Gaps = 28/289 (9%)
Query: 88 YDYMISIK--FEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCR 144
+ Y+I+ + F +A L+ K GR++ +F+++ ++D N++I YA
Sbjct: 8 HSYIIARQTGFSYSAIKSNQQLNDLSKSGRIDEARHIFDKLPERDEFSWNTMIAAYANSG 67
Query: 145 YLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGV 204
L + F + K ++W+++++G+ F E L +M+ +PN +L +
Sbjct: 68 RLTDAKQLFCEAPLKSSITWSSLISGFCKYEFDIEAFELYLQMQF--EGQRPNHYTLGSI 125
Query: 205 LAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLS-TRD 252
L C++ ++ G+ IHGY ++ + L C + + +F ++ +++
Sbjct: 126 LRLCSRTGFLQKGERIHGYAIKTRLDANVFVVTSLVDLYAKCECISEAEYIFEMVADSKN 185
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA--------- 303
W ++++ + +G A+ RD+ V+ N T S+L AC ++
Sbjct: 186 HATWTAMLTGYSHNGDGFRAIKCFRDMRAEGVESNQFTFPSILTACGAVSDHVFGVQVHG 245
Query: 304 --LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ G G FV +AL+DMY +C + + ++ M ++VSWN MI
Sbjct: 246 CIVRSGFGANIFVQSALVDMYAKCRDLNSANRVLENMEVNDVVSWNSMI 294
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 32/187 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTS++ Y+ G YE+ + LF M GV PD V V AC+EL G+ V+ +
Sbjct: 390 SWTSLVTGYSYNGSYEDAIKLFCDMRIAGVCPDQIVLASVLSACAELTVTEFGQQVHATI 449
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ SGL + ++NSL+ YAKC ++ ++
Sbjct: 450 LK--------------------------SGLCSSLS----IDNSLVTMYAKCGGIEDANY 479
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +D++SW A++ GYA G ++ + D +MI T +P+ I+ G+L AC+
Sbjct: 480 VFDSMQIRDVISWTALIVGYAQNGRGKDSLHFYD--QMIATGTKPDFITFIGLLFACSHT 537
Query: 212 KGVKLGK 218
V+ G+
Sbjct: 538 GLVEDGR 544
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
+F + + + W+S+IS F + ++A +L + +PN T+ S+L C +
Sbjct: 75 LFCEAPLKSSITWSSLISGFCKYEFDIEAFELYLQMQFEGQRPNHYTLGSILRLCSRTGF 134
Query: 304 LPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH-KNLVSWNVMIS 351
L +G L FV +L+D+Y +C I ++ IF ++ KN +W M++
Sbjct: 135 LQKGERIHGYAIKTRLDANVFVVTSLVDLYAKCECISEAEYIFEMVADSKNHATWTAMLT 194
Query: 352 VY 353
Y
Sbjct: 195 GY 196
>gi|15235810|ref|NP_194836.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|2980759|emb|CAA18186.1| putative protein [Arabidopsis thaliana]
gi|7270009|emb|CAB79825.1| putative protein [Arabidopsis thaliana]
gi|332660453|gb|AEE85853.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 613
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 136/254 (53%), Gaps = 25/254 (9%)
Query: 124 EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNL 183
E M + L++ +L+D Y K + F +++ K+ VSW AM++G E +L
Sbjct: 179 ERMQESVLLSTALVDMYLKFDDHAAAFHVFDQMEVKNEVSWTAMISGCVANQNYEMGVDL 238
Query: 184 LDEMEMIQTDMQPNTISLSGVLAACAQVK-GVKLGKAIHGYVLRHHIH----LSTA---- 234
M+ + +++PN ++L VL AC ++ G L K IHG+ RH H L+ A
Sbjct: 239 FRAMQ--RENLRPNRVTLLSVLPACVELNYGSSLVKEIHGFSFRHGCHADERLTAAFMTM 296
Query: 235 ---CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI 291
CG V S +F RDVV+W+S+IS + +G + ++LL + ++ N+VT+
Sbjct: 297 YCRCGNVSLSRVLFETSKVRDVVMWSSMISGYAETGDCSEVMNLLNQMRKEGIEANSVTL 356
Query: 292 VSVLPAC-----LKLAA------LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340
++++ AC L A+ L G + + NALIDMY +CG++ +R++F +
Sbjct: 357 LAIVSACTNSTLLSFASTVHSQILKCGFMSHILLGNALIDMYAKCGSLSAAREVFYELTE 416
Query: 341 KNLVSWNVMISVYG 354
K+LVSW+ MI+ YG
Sbjct: 417 KDLVSWSSMINAYG 430
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/345 (22%), Positives = 154/345 (44%), Gaps = 56/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK-DYRVGKDVYDY 90
+WT+M+ YE V+LF M + +RP+ V AC EL + K+++ +
Sbjct: 218 SWTAMISGCVANQNYEMGVDLFRAMQRENLRPNRVTLLSVLPACVELNYGSSLVKEIHGF 277
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ + + ++ +CG + ++ LFE
Sbjct: 278 SFRHGCHADERLTAAFMTMYCRCGNVSLSRVLFETS------------------------ 313
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
K +D+V W++M++GYA G EV NLL++M + ++ N+++L +++AC
Sbjct: 314 ------KVRDVVMWSSMISGYAETGDCSEVMNLLNQMR--KEGIEANSVTLLAIVSACTN 365
Query: 211 VKGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ +H +L+ HI L A CG + + VF +L+ +D+V W+S+
Sbjct: 366 STLLSFASTVHSQILKCGFMSHILLGNALIDMYAKCGSLSAAREVFYELTEKDLVSWSSM 425
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC--LKLAALPQGLGTGSFVWN- 316
I+A+ G +AL++ + +I + + + +++L AC L Q + T + ++
Sbjct: 426 INAYGLHGHGSEALEIFKGMIKGGHEVDDMAFLAILSACNHAGLVEEAQTIFTQAGKYHM 485
Query: 317 --------ALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMISV 352
I++ GR G I + ++ + MP K W+ ++S
Sbjct: 486 PVTLEHYACYINLLGRFGKIDDAFEVTINMPMKPSARIWSSLLSA 530
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 105/266 (39%), Gaps = 55/266 (20%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W+SM+ Y G E++NL M +G+ + + AC+ V+ ++
Sbjct: 321 WSSMISGYAETGDCSEVMNLLNQMRKEGIEANSVTLLAIVSACTNSTLLSFASTVHSQIL 380
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
KCG M L+ N+LID YAKC L +
Sbjct: 381 -------------------KCGFM-----------SHILLGNALIDMYAKCGSLSAAREV 410
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ +KDLVSW++M+ Y L G E + MI+ + + ++ +L+AC
Sbjct: 411 FYELTEKDLVSWSSMINAYGLHGHGSEALEIFK--GMIKGGHEVDDMAFLAILSACNHAG 468
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
V+ + I ++H+ ++ + + I+ R G++ DA
Sbjct: 469 LVEEAQTIFTQAGKYHMPVT--------------------LEHYACYINLLGRFGKIDDA 508
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPAC 298
++ I +KP+ S+L AC
Sbjct: 509 FEV---TINMPMKPSARIWSSLLSAC 531
>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
Length = 638
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 169/345 (48%), Gaps = 29/345 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+G Y G E+ +LF M +G D F + ACS+ + +G+ V+ M
Sbjct: 180 SWNSMIGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRM 239
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSH 150
+ + ++ L+D++ KCG + + FE M +V+ S++ K + +
Sbjct: 240 LVSGSRVDLILESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTKHGSVNAAR 299
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
C F + ++++VSWNAM++ Y G E +L ++M+ + P+ I+L VL+A +
Sbjct: 300 CWFDHMPERNIVSWNAMISCYVQRGQCHEALDLYNQMQ--SQGLAPDEITLVAVLSASGR 357
Query: 211 VKGVKLGKAIHGYVLRHHIH------------LSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ + +GK +H Y+ R +I+ + CG V + S+F+++ R+VV WN
Sbjct: 358 IGDLTVGKMVHLYI-RDNIYNPDVSLVNSLLDMYAKCGQVDTAISLFSEMCNRNVVSWNV 416
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---LGTGSFVW 315
II G+ +D + R ++ + P+ +T V++L AC L G + V+
Sbjct: 417 IIGGLAMHGRALDTITFFRSMVTDSFAPDGITFVALLSACSHGGLLETGQHYFESMRHVY 476
Query: 316 NA---------LIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMI 350
N ++D+ GR G ++K+ + MP K ++V W ++
Sbjct: 477 NVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALL 521
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 153/357 (42%), Gaps = 85/357 (23%)
Query: 47 EEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPL 106
E + L M+ +G+ P+ F P V KAC+ + V+ + + G
Sbjct: 94 REALRLHRGMLRRGILPNEFTLPFVVKACTIAQAREHALAVHGVALRLGLVGQV------ 147
Query: 107 LDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNA 166
V N+L+ YA L S F ++ +++VSWN+
Sbjct: 148 ------------------------FVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNS 183
Query: 167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL- 225
M+ GYA G EV +L EM + + +L +L AC+Q +++G+ +H +L
Sbjct: 184 MIGGYAQAGDTREVCSLFGEMR--RQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRMLV 241
Query: 226 ---RHHIHLSTA-------CG---------------------FVICSCSV---------- 244
R + L +A CG ++C+ +
Sbjct: 242 SGSRVDLILESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTKHGSVNAARCW 301
Query: 245 FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL 304
F+ + R++V WN++IS +V+ GQ +ALDL + + P+ +T+V+VL A ++ L
Sbjct: 302 FDHMPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSASGRIGDL 361
Query: 305 PQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
G ++ N+L+DMY +CG + + +F M ++N+VSWNV+I
Sbjct: 362 TVGKMVHLYIRDNIYNPDVSLVNSLLDMYAKCGQVDTAISLFSEMCNRNVVSWNVII 418
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 24/220 (10%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I D V +N ++ Y E L M++ + PN +L V+ AC +
Sbjct: 69 FDGIPGPDRVMYNTIIRAYCNSSCPREALRL--HRGMLRRGILPNEFTLPFVVKACTIAQ 126
Query: 213 GVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ A+HG LR +H + G + S F+++ R+VV WNS+I
Sbjct: 127 AREHALAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIG 186
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGSFV 314
+ ++G + L ++ + T+VS+L AC + L G L +GS V
Sbjct: 187 GYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRV 246
Query: 315 ----WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+AL+DMYG+CG + +R+ F +MP K++VSW M+
Sbjct: 247 DLILESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSML 286
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 105/252 (41%), Gaps = 47/252 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G E ++L+ M +G+ PD V A + D VGK V+ Y
Sbjct: 312 SWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSASGRIGDLTVGKMVHLY- 370
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I ++ + D + NSL+D YAKC + +
Sbjct: 371 --------------------------IRDNIY---NPDVSLVNSLLDMYAKCGQVDTAIS 401
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS++ +++VSWN ++ G A+ G + M + P+ I+ +L+AC+
Sbjct: 402 LFSEMCNRNVVSWNVIIGGLAMHGRALDTITFFRSM--VTDSFAPDGITFVALLSACSHG 459
Query: 212 KGVKLGKAI-----HGYVLRHHIHLSTAC--------GFVICSCSVFNQLSTR-DVVVWN 257
++ G+ H Y ++H + AC G + + + ++ + DVVVW
Sbjct: 460 GLLETGQHYFESMRHVYNVKHEVE-HYACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWG 518
Query: 258 SIISAFVRSGQV 269
+++ A G V
Sbjct: 519 ALLGACRIHGNV 530
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 12/136 (8%)
Query: 231 LSTACGFVICSCS-VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289
L+ A V+C +F+ + D V++N+II A+ S +AL L R ++ + PN
Sbjct: 54 LAKAGHGVLCHARRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEF 113
Query: 290 TIVSVLPAC-----------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLM 338
T+ V+ AC + AL GL FV NAL+ Y G++ SR+ F M
Sbjct: 114 TLPFVVKACTIAQAREHALAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEM 173
Query: 339 PHKNLVSWNVMISVYG 354
+N+VSWN MI Y
Sbjct: 174 VDRNVVSWNSMIGGYA 189
>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Glycine max]
Length = 778
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 100/393 (25%), Positives = 171/393 (43%), Gaps = 71/393 (18%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGY----------------- 45
LG+ +HAH +V G + F+ S L++++C ++ + V
Sbjct: 121 LGMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLV 180
Query: 46 ----YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
Y++ V +F M+ +GVR D V A +E+++ +VG + + + F
Sbjct: 181 RNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFH---- 236
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
D ++ G LI ++KC + + F I++ DL
Sbjct: 237 -----FDDYVLTG---------------------LISVFSKCEDVDTARLLFGMIRKPDL 270
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEM----EMIQTDMQPNTISLSGV-----LAACAQVK 212
VS+NA+++G++ G E E+ + + + I +S LA C Q
Sbjct: 271 VSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGF 330
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
VK G + V + + + + +F++ S + V WN++IS + +SG A
Sbjct: 331 CVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMA 390
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDM 321
+ L ++++ PN VTI S+L AC +L AL G L +V ALIDM
Sbjct: 391 ISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDM 450
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
Y +CG I ++ ++F L KN V+WN MI YG
Sbjct: 451 YAKCGNISEASQLFDLTSEKNTVTWNTMIFGYG 483
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 119/231 (51%), Gaps = 25/231 (10%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V+ +L Y++ + ++ F + +K + +WNAM++GYA G E +L EM +
Sbjct: 342 VSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEM--MT 399
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVIC 240
T+ PN ++++ +L+ACAQ+ + GK++H + L +I++STA CG +
Sbjct: 400 TEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISE 459
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ +F+ S ++ V WN++I + G +AL L +++ +P++VT +SVL AC
Sbjct: 460 ASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSH 519
Query: 301 LAALPQGLGTGSFVWNA------------LIDMYGRCGAIQKSRKIFVLMP 339
+ +G + N ++D+ GR G ++K+ + MP
Sbjct: 520 AGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMP 570
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 111/268 (41%), Gaps = 56/268 (20%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y G E ++LF M+ P+ + AC++L GK V+ +
Sbjct: 374 WNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIK 433
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
S + ++Q+ V+ +LID YAKC + +
Sbjct: 434 S------------------------------KNLEQNIYVSTALIDMYAKCGNISEASQL 463
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F +K+ V+WN M+ GY L G+ +E L + EM+ QP++++ VL AC+
Sbjct: 464 FDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFN--EMLHLGFQPSSVTFLSVLYACSHAG 521
Query: 213 GVKLGKAI-HGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V+ G I H V ++ I L+ + ++ R+GQ+
Sbjct: 522 LVREGDEIFHAMVNKYRI----------------EPLAEH----YACMVDILGRAGQLEK 561
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACL 299
AL+ +R + V+P ++L AC+
Sbjct: 562 ALEFIRKM---PVEPGPAVWGTLLGACM 586
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 111/222 (50%), Gaps = 29/222 (13%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ-TDMQPNTISLSGVLAACAQV 211
F + + D+ +N ++ G++ F + +++ +++ T + P+ + + ++A
Sbjct: 63 FFSVPKPDIFLFNVLIKGFS---FSPDASSISFYTHLLKNTTLSPDNFTYAFAISASPDD 119
Query: 212 KGVKLGKAIHGYVL----RHHIHLSTACGFVICSCS-------VFNQLSTRDVVVWNSII 260
LG +H + + ++ +++A + C S VF+++ RD V+WN++I
Sbjct: 120 N---LGMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMI 176
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGT---------- 310
+ VR+ D++ + +D++ V+ ++ T+ +VLPA ++ + G+G
Sbjct: 177 TGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFH 236
Query: 311 -GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+V LI ++ +C + +R +F ++ +LVS+N +IS
Sbjct: 237 FDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALIS 278
>gi|449439011|ref|XP_004137281.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39350-like [Cucumis sativus]
Length = 787
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 102/379 (26%), Positives = 170/379 (44%), Gaps = 67/379 (17%)
Query: 5 IQVHAHLIV----CGVELCAFLGSQLLEVFCN-----WTSMMGMYNVLGYYEEIVNLFYL 55
I + +HL V CG C L +L + + W +++ MY G++ + + +F
Sbjct: 117 IHLPSHLAVSYAFCG---CVPLARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDS 173
Query: 56 MIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG 114
MI G PD + P V KACS + VG + G A V
Sbjct: 174 MICSGKCWPDKYTFPLVIKACSVMSMLNVG---------VLIHGRALV------------ 212
Query: 115 RMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALG 174
SG M V NSL+ Y C + ++ F+ + ++ +VSWN M++G+
Sbjct: 213 -----SGFSSNM----FVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQN 263
Query: 175 GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH---- 230
G EE + + M + ++P++ ++ L +C +K ++LG +H V ++H+
Sbjct: 264 GRPEEALAVFNSM--MDARVEPDSATIVSALPSCGHLKELELGIKVHKLVQKNHLQEKIE 321
Query: 231 -------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283
+ + CG + + VF + +DV+ W S+I+ ++ +G AL L + +
Sbjct: 322 VRNALVDMYSRCGGMDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDG 381
Query: 284 VKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSR 332
V PN VT+ S+L AC L L QG L + V ALIDMY +C A+ S
Sbjct: 382 VVPNAVTLASLLSACASLCCLKQGKSLHAWVMRKKLDSDVLVVTALIDMYAKCNAVSYSF 441
Query: 333 KIFVLMPHKNLVSWNVMIS 351
++F K V WN ++S
Sbjct: 442 QVFAKTSMKRTVPWNALLS 460
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 123/258 (47%), Gaps = 24/258 (9%)
Query: 118 ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFR 177
ITSGL + L ++ + YA C + ++ F + L WNA++ Y GF
Sbjct: 106 ITSGLLHSPNFIHLPSHLAVS-YAFCGCVPLARKLFDDLSDPSLFLWNAIIKMYVDKGFH 164
Query: 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG-----------YVLR 226
+ + D M + P+ + V+ AC+ + + +G IHG +V
Sbjct: 165 FDALRVFDSM-ICSGKCWPDKYTFPLVIKACSVMSMLNVGVLIHGRALVSGFSSNMFVQN 223
Query: 227 HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286
+ + CG V + VFN + R VV WN++IS + ++G+ +AL + ++ A V+P
Sbjct: 224 SLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSMMDARVEP 283
Query: 287 NTVTIVSVLPACLKLAALPQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIF 335
++ TIVS LP+C L L G+ V NAL+DMY RCG + ++ +F
Sbjct: 284 DSATIVSALPSCGHLKELELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCGGMDEASLVF 343
Query: 336 VLMPHKNLVSWNVMISVY 353
K++++W MI+ Y
Sbjct: 344 AETKEKDVITWTSMINGY 361
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 78/344 (22%), Positives = 145/344 (42%), Gaps = 58/344 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WTSM+ Y + G + + L M GV P+ + AC+ L + GK ++ +++
Sbjct: 354 WTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSACASLCCLKQGKSLHAWVM 413
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
K +D D LV +LID YAKC + S
Sbjct: 414 RKK------------------------------LDSDVLVVTALIDMYAKCNAVSYSFQV 443
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+K K V WNA+L+G E L M+ +++ N + + V+ A A +
Sbjct: 444 FAKTSMKRTVPWNALLSGLIHNELAREAVGLFK--SMLIEEVEANHATFNSVIPAYAILA 501
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLST--RDVVVWNSI 259
+K +H Y++R I + + CG + + +F+++ +D++VW+ +
Sbjct: 502 DLKQVMNLHSYLVRSGFISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVL 561
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----- 314
I+ + G A+ L ++ + ++PN +T SVL AC + GL ++
Sbjct: 562 IAGYGMHGHGETAVLLFNQMVHSGMQPNEITFTSVLHACSHRGLVDDGLTLFKYMIENYP 621
Query: 315 -------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ ++D+ GR G + ++ + MP +N W ++
Sbjct: 622 SSPLPNHYTCVVDLLGRAGRLDEAYDLIKSMPFQQNHSIWGALL 665
>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
Length = 1151
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 100/402 (24%), Positives = 173/402 (43%), Gaps = 91/402 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
++ G Q+H++L G+ + LL+++ W M+
Sbjct: 260 LQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVA 319
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ + + LF M G+RP+ F P + + C+ ++ +G+ ++ + FE
Sbjct: 320 FGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFE-- 377
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D V+ LID Y+K +L+ + +K+K
Sbjct: 378 ----------------------------SDMYVSGVLIDMYSKYGWLEKARRVLEMLKEK 409
Query: 160 DLVSWNAMLAGY--------ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
D+VSW +M+AGY AL F+ EM + + P+ I L+ ++ CA +
Sbjct: 410 DVVSWTSMIAGYVQHECCKDALAAFK----------EMQKCGIWPDNIGLASAISGCAGI 459
Query: 212 KGVKLGKAIH------GY-----VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ G IH GY + ++L CG + + S F ++ +D + N ++
Sbjct: 460 NAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLV 519
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTG-S 312
S F +SG +AL + + + VK N T VS L A LA + QG + TG S
Sbjct: 520 SGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHS 579
Query: 313 F---VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
F V NALI +YG+CG+ + ++ F M +N VSWN +I+
Sbjct: 580 FETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIIT 621
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 154/344 (44%), Gaps = 54/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G EE + L+ M GV P +V V +C++
Sbjct: 110 SWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKA------------- 156
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+LF + GR+ G + V N++I Y +C +++
Sbjct: 157 ----------------ELFAQ-GRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAER 199
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +D V++N +++G+A G E + +EM+ + + P+ +++S +LAACA +
Sbjct: 200 VFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQF--SGLSPDCVTISSLLAACASL 257
Query: 212 KGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ G +H Y+ + I L CG V + +FN +VV+WN ++
Sbjct: 258 GDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLML 317
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQGLG 309
AF + + + +L + A ++PN T +L C + ++ G
Sbjct: 318 VAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFE 377
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ +V LIDMY + G ++K+R++ ++ K++VSW MI+ Y
Sbjct: 378 SDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGY 421
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/397 (21%), Positives = 169/397 (42%), Gaps = 77/397 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++LG Q+H+ + G E ++ L++++ +WTSM+
Sbjct: 361 IDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAG 420
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y ++ + F M G+ PD+ C+ + R G ++ + + G
Sbjct: 421 YVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSG- 479
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D + N+L++ YA+C ++ + F +++ K
Sbjct: 480 -----------------------------DVSIWNALVNLYARCGRIREAFSSFEEMELK 510
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D ++ N +++G+A G EE + M M Q+ ++ N + L+A A + +K GK
Sbjct: 511 DGITGNGLVSGFAQSGLHEEALKVF--MRMDQSGVKHNVFTFVSALSASANLAEIKQGKQ 568
Query: 220 IHGYVLRHHIHLSTACGFVICS----CSVF-------NQLSTRDVVVWNSIISAFVRSGQ 268
IH V++ T G + S C F +++S R+ V WN+II++ + G+
Sbjct: 569 IHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGR 628
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WN 316
++ALDL + +KPN VT + VL AC + + +GL + +
Sbjct: 629 GLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYA 688
Query: 317 ALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ID++GR G + +++K MP + + W ++S
Sbjct: 689 CVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSA 725
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 119/246 (48%), Gaps = 24/246 (9%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
+V N LID Y+K + + F ++ +D VSW AML+GYA G EE L +M
Sbjct: 78 IVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMH-- 135
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVI 239
+ + P LS VL++C + + G+ IH +H I L CG
Sbjct: 136 RAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFR 195
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ VF + RD V +N++IS + G AL++ ++ + + P+ VTI S+L AC
Sbjct: 196 LAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACA 255
Query: 300 KLAALPQGLGTGSFVWNA-----------LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
L L +G S+++ A L+D+Y +CG ++ + IF N+V WN+
Sbjct: 256 SLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNL 315
Query: 349 MISVYG 354
M+ +G
Sbjct: 316 MLVAFG 321
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 303 ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
A+ +GLG V N LID+Y + G + +R++F + ++ VSW M+S Y
Sbjct: 68 AVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGY 118
>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
Length = 839
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 96/392 (24%), Positives = 166/392 (42%), Gaps = 77/392 (19%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVL---------------------G 44
Q+HAH I +G+ +++V+ S++ G
Sbjct: 258 QLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTG 317
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
E + LF M G+ D V+ AC+E+K Y G V+ I F+ + CV+
Sbjct: 318 LGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVCVR- 376
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
N+++D Y KC+ L ++ F +++Q+D VSW
Sbjct: 377 -----------------------------NAILDLYGKCKALVEAYLVFQEMEQRDSVSW 407
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
NA++A E+ L+EM ++ M+P+ + VL ACA ++ ++ G +HG
Sbjct: 408 NAIIAALEQNECYEDTIAYLNEM--LRYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKA 465
Query: 225 LRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
++ + L CG + + + +++ +++V WNSIIS F + Q +A
Sbjct: 466 IKSGLGLDAFVSSTVVDMYCKCGMITEAQKLHDRIGGQELVSWNSIISGFSLNKQSEEAQ 525
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNALIDM 321
+++ VKP+ T +VL C LA + G LG ++ + L+DM
Sbjct: 526 KFFSEMLDIGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGD-EYISSTLVDM 584
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
Y +CG + S +F + VSWN MI Y
Sbjct: 585 YAKCGNMPDSLLMFEKAQKLDFVSWNAMICGY 616
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 152/345 (44%), Gaps = 56/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ YE+ + M+ G+ PD F V KAC+ L+ G V+
Sbjct: 406 SWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYGSVVH--- 462
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
G A I SGL D V+++++D Y KC + +
Sbjct: 463 ------GKA-----------------IKSGL----GLDAFVSSTVVDMYCKCGMITEAQK 495
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+I ++LVSWN++++G++L EE EM + ++P+ + + VL CA +
Sbjct: 496 LHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEM--LDIGVKPDHFTYATVLDTCANL 553
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++LGK IHG +++ + + CG + S +F + D V WN++I
Sbjct: 554 ATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKAQKLDFVSWNAMI 613
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----LGTGSFV- 314
+ GQ +AL++ + ANV PN T V+VL AC + L G L T +
Sbjct: 614 CGYALHGQGFEALEMFERMQQANVVPNHATFVAVLRACSHVGLLDDGCRYFYLMTSRYKL 673
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ ++D+ GR Q++ K MP + V W ++S+
Sbjct: 674 EPQLEHFACMVDILGRSKGPQEALKFIRSMPLEADAVIWKTLLSI 718
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/396 (23%), Positives = 169/396 (42%), Gaps = 75/396 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSM---------MGMYNVLGY------ 45
+ LG+Q+HA + G+E+ GS L++++ S+ MG N + +
Sbjct: 152 LALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGERNSVSWGAAIAG 211
Query: 46 ------YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y + LF M G+ V+++C+ + + ++ + I KF
Sbjct: 212 CVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTARQLHAHAIKNKFSA- 270
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D +V +++D YAK L + F +
Sbjct: 271 -----------------------------DRVVGTAIVDVYAKADSLVDARRAFFSLPNH 301
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+ + NAM+ G G E L M ++ + + +SLSGV +ACA+VKG G
Sbjct: 302 TVQACNAMMVGLVRTGLGAEALQLFQ--FMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQ 359
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H ++ + L C ++ + VF ++ RD V WN+II+A ++
Sbjct: 360 VHCLAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNEC 419
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNA 317
D + L +++ ++P+ T SVL AC L A+ GLG +FV +
Sbjct: 420 YEDTIAYLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSST 479
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
++DMY +CG I +++K+ + + LVSWN +IS +
Sbjct: 480 VVDMYCKCGMITEAQKLHDRIGGQELVSWNSIISGF 515
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 102/232 (43%), Gaps = 53/232 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G VH I G+ L AF+ S +++++C +W S++
Sbjct: 455 LEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQKLHDRIGGQELVSWNSIISG 514
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+++ EE F M+D GV+PDHF V C+ L +GK ++ +I
Sbjct: 515 FSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCANLATIELGKQIHGQIIK------ 568
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+EM D ++++L+D YAKC + S F K ++
Sbjct: 569 ------------------------QEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKAQKL 604
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
D VSWNAM+ GYAL G E + + M+ Q ++ PN + VL AC+ V
Sbjct: 605 DFVSWNAMICGYALHGQGFEALEMFERMQ--QANVVPNHATFVAVLRACSHV 654
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 75/344 (21%), Positives = 145/344 (42%), Gaps = 56/344 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ Y G + + V L M +GV PD + KAC L+D +G ++
Sbjct: 103 SWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTLAVLLKACGGLEDLALGVQIHAVA 162
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ E M++ +G ++L+D Y KCR L+ +
Sbjct: 163 VKTGLE------------------MDVRAG------------SALVDMYGKCRSLEDALR 192
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDE-MEMIQTDMQPNTISLSGVLAACAQ 210
F + +++ VSW A +AG E+ T L+ ++M + + + + + V +CA
Sbjct: 193 FFHGMGERNSVSWGAAIAGCVQ---NEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAA 249
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVICSC-----------SVFNQLSTRDVVVWNSI 259
+ + + +H + +++ G I F L V N++
Sbjct: 250 ITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAM 309
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------ 313
+ VR+G +AL L + + + + + V++ V AC ++ QGL
Sbjct: 310 MVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGF 369
Query: 314 -----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
V NA++D+YG+C A+ ++ +F M ++ VSWN +I+
Sbjct: 370 DVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAA 413
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 123/291 (42%), Gaps = 25/291 (8%)
Query: 83 VGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYA 141
G+ + M+ F V LL ++ +CG G+F+ M +D + N+++ YA
Sbjct: 22 TGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFDVMPHRDTVSWNTMLTAYA 81
Query: 142 KCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISL 201
+ F + D+VSWNA+L+GY G + L +EM + + P+ +L
Sbjct: 82 HAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGL--SVEMARRGVAPDRTTL 139
Query: 202 SGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVIC-----------SCSVFNQLST 250
+ +L AC ++ + LG IH ++ + + G + + F+ +
Sbjct: 140 AVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGE 199
Query: 251 RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------L 299
R+ V W + I+ V++ Q L+L + + + SV +C L
Sbjct: 200 RNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTARQL 259
Query: 300 KLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
A+ V A++D+Y + ++ +R+ F +P+ + + N M+
Sbjct: 260 HAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMM 310
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-- 298
+ S+F + DVV WN+++S + + G D++ L ++ V P+ T+ +L AC
Sbjct: 89 AASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTLAVLLKACGG 148
Query: 299 ---------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
+ A+ GL +AL+DMYG+C +++ + + F M +N VSW
Sbjct: 149 LEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGERNSVSWGAA 208
Query: 350 IS 351
I+
Sbjct: 209 IA 210
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 304 LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L G +FV N L+ MY RCG +R +F +MPH++ VSWN M++ Y
Sbjct: 31 LVSGFMPTTFVSNCLLQMYARCGGAAHARGVFDVMPHRDTVSWNTMLTAY 80
>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
Length = 695
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 148/322 (45%), Gaps = 67/322 (20%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G + + F M ++G + V ACS+L D + GK ++
Sbjct: 134 GCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIH--------------- 178
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
GR+ TS + + V N+L + YAKC L + F ++ K++VS
Sbjct: 179 ----------GRIVATS-----LGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVS 223
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
WN+M++GY G E T L EM+ + + P+ +++S +L+A Q
Sbjct: 224 WNSMISGYLQNGQPETCTKLFCEMQ--SSGLMPDQVTISNILSAYFQ------------- 268
Query: 224 VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283
CG++ +C F ++ +D V W +++ ++G+ DAL L R++++ N
Sbjct: 269 -----------CGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLEN 317
Query: 284 VKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSR 332
V+P+ TI SV+ +C +LA+L QG V +AL+DMY +CG +
Sbjct: 318 VRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAW 377
Query: 333 KIFVLMPHKNLVSWNVMISVYG 354
+F M +N++SWN MI Y
Sbjct: 378 IVFKRMLTRNVISWNSMILGYA 399
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 117/280 (41%), Gaps = 64/280 (22%)
Query: 111 IKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAG 170
++ R++ L D + N L+ YAK L + F K+ ++D+ SWNAML+
Sbjct: 39 VQAKRLQTHMDLHLYQPTDTFLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSA 98
Query: 171 YALGGFREEVTNLLDEM-----------------------------EMIQTDMQPNTISL 201
Y+ G E++ + D+M M + + +
Sbjct: 99 YSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTH 158
Query: 202 SGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLST 250
VL AC+Q+ +K GK IHG +V ++ CG + + +F+++
Sbjct: 159 VSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVN 218
Query: 251 RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGT 310
++VV WNS+IS ++++GQ L ++ + + P+ VTI ++L A
Sbjct: 219 KNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSA------------- 265
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
Y +CG I ++ K F + K+ V W M+
Sbjct: 266 -----------YFQCGYIDEACKTFREIKEKDKVCWTTMM 294
Score = 40.8 bits (94), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
T +F+ N L+ +Y + G + +R +F M +++ SWN M+S Y
Sbjct: 56 TDTFLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYS 100
>gi|147862347|emb|CAN84022.1| hypothetical protein VITISV_004991 [Vitis vinifera]
Length = 566
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 150/334 (44%), Gaps = 65/334 (19%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
NW M+ GY+EE + F LM + G+ + F V K C L D+ GK+V+
Sbjct: 95 NW--MVSALAFHGYHEEAIGYFSLMQELGIVANKFTFSIVLKQCVGLMDFNKGKEVH--- 149
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
CV + G + S V NS ID Y KC ++
Sbjct: 150 ---------CV-------ISRTGLGNVVS-----------VANSXIDMYCKCGHVGYGRK 182
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + ++D+VSW +M+ GY G EE L + M++ ++PN + + ++A A+
Sbjct: 183 VFDGMIERDVVSWTSMICGYCNIGTLEEALVLFERMKV--EGLEPNDFTWNXMIAGYAR- 239
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
FV+ S V L D+V WN++IS F +S + V+
Sbjct: 240 ------------------DGDCNGAFVLFSRMVREGL-VPDLVTWNAMISGFTQSLKAVE 280
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALID 320
A L +D+ VA +KPN VT+ +LPAC + ++ + G FV ALID
Sbjct: 281 AWRLFQDMXVAGIKPNQVTVTGLLPACGLMGSIHRGKELHGLIYRMGXDMNVFVATALID 340
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
Y +CG ++ + +F +P KN+ SWN MI YG
Sbjct: 341 XYSKCGTVKDAWDVFDRIPIKNVASWNAMIGCYG 374
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 23/169 (13%)
Query: 208 CAQVKGVKLGKAIHGYVLRHHIHLS------------TACGFVICSCSVFNQLSTRDVVV 255
C + K ++ GK +H +L I ++ +CG + + V + +V
Sbjct: 34 CLKCKALQPGKQVHAMLLASRIDMNILSMSSKLVGMYASCGDLQSARLVLERTQNPNVFA 93
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------- 307
+N ++SA G +A+ + + N T VL C+ L +G
Sbjct: 94 FNWMVSALAFHGYHEEAIGYFSLMQELGIVANKFTFSIVLKQCVGLMDFNKGKEVHCVIS 153
Query: 308 ---LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
LG V N+ IDMY +CG + RK+F M +++VSW MI Y
Sbjct: 154 RTGLGNVVSVANSXIDMYCKCGHVGYGRKVFDGMIERDVVSWTSMICGY 202
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 80/204 (39%), Gaps = 36/204 (17%)
Query: 26 LLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGK 85
L+ W +M+ + E LF M G++P+ + AC + GK
Sbjct: 258 LVPDLVTWNAMISGFTQSLKAVEAWRLFQDMXVAGIKPNQVTVTGLLPACGLMGSIHRGK 317
Query: 86 DVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRY 145
+++ + + + N V L+D + KCG ++ +F+
Sbjct: 318 ELHGLIYRMGXDMNVFVATALIDXYSKCGTVKDAWDVFD--------------------- 356
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
+I K++ SWNAM+ Y G + L + M+ MQ N I+L VL
Sbjct: 357 ---------RIPIKNVASWNAMIGCYGKHGLVDSSIQLFERMQ--AEGMQANHITLISVL 405
Query: 206 AACAQ----VKGVKLGKAIHGYVL 225
+AC+ KG+ + + + Y L
Sbjct: 406 SACSHGGLVEKGLTIFRMVEAYEL 429
>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Glycine max]
Length = 923
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 90/354 (25%), Positives = 159/354 (44%), Gaps = 53/354 (14%)
Query: 22 LGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY 81
S L + +W +++ Y + +N F M + +PD + A +
Sbjct: 306 FASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNL 365
Query: 82 RVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYA 141
GK+V+ Y I +GL D + + N+LID YA
Sbjct: 366 LNGKEVHAYAIR--------------------------NGL----DSNMQIGNTLIDMYA 395
Query: 142 KCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISL 201
KC +K F + +KDL+SW ++AGYA E NL ++++ D+ P + +
Sbjct: 396 KCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDP--MMI 453
Query: 202 SGVLAACAQVKGVKLGKAIHGYVLRHH----------IHLSTACGFVICSCSVFNQLSTR 251
VL AC+ +K + IHGYV + +++ G + F + ++
Sbjct: 454 GSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHRDYARRAFESIRSK 513
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTG 311
D+V W S+I+ V +G V+AL+L + N++P+++ I+S L A L++L +G
Sbjct: 514 DIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIH 573
Query: 312 SF-----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
F + ++L+DMY CG ++ SRK+F + ++L+ W MI+ G
Sbjct: 574 GFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANG 627
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 104/396 (26%), Positives = 168/396 (42%), Gaps = 79/396 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNV 42
G Q+HA L+ L AFL ++LL ++ W +MMG +
Sbjct: 65 GQQLHARLLKS--HLSAFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVS 122
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G Y E + L+ M GV D P V KAC L + R+G +++
Sbjct: 123 SGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHG------------- 169
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKI--KQKD 160
+ +KCG E V N+LI Y KC L + F I +++D
Sbjct: 170 ------VAVKCGFGEFV-----------FVCNALIAMYGKCGDLGGARVLFDGIMMEKED 212
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
VSWN++++ + G E +L M+ + + NT + L VKLG I
Sbjct: 213 TVSWNSIISAHVTEGKCLEALSLFRRMQ--EVGVASNTYTFVAALQGVEDPSFVKLGMGI 270
Query: 221 HGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
HG L+ + I + CG + + VF + RD V WN+++S V++
Sbjct: 271 HGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELY 330
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNAL 318
DAL+ RD+ + KP+ V++++++ A + A+ GL + + N L
Sbjct: 331 RDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTL 390
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
IDMY +C ++ F M K+L+SW +I+ Y
Sbjct: 391 IDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYA 426
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/382 (22%), Positives = 168/382 (43%), Gaps = 77/382 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G +VHA+ I G++ +G+ L++++ +WT+++ Y
Sbjct: 368 GKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQ 427
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+ E +NLF + KG+ D + V +ACS LK ++++ Y+
Sbjct: 428 NECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVF---------- 477
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
KR L D+ ++ N++++ Y + + + F I+ KD+V
Sbjct: 478 KRDLADIMLQ---------------------NAIVNVYGEVGHRDYARRAFESIRSKDIV 516
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW +M+ G E L ++ QT++QP++I++ L+A A + +K GK IHG
Sbjct: 517 SWTSMITCCVHNGLPVEALELFYSLK--QTNIQPDSIAIISALSATANLSSLKKGKEIHG 574
Query: 223 YVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+++R L CG V S +F+ + RD+++W S+I+A G +
Sbjct: 575 FLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNE 634
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNALI 319
A+ L + + NV P+ +T +++L AC + +G L + ++
Sbjct: 635 AIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMV 694
Query: 320 DMYGRCGAIQKSRKIFVLMPHK 341
D+ R +++++ + MP K
Sbjct: 695 DLLSRSNSLEEAYQFVRSMPIK 716
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 93/172 (54%), Gaps = 22/172 (12%)
Query: 204 VLAACAQVKGVKLGKAIHGYVLRHHI---------HLSTACGFVICSCSVFNQLSTRDVV 254
+L C VK + G+ +H +L+ H+ H+ CG + + VF++++ R +
Sbjct: 52 LLDLCVAVKALPQGQQLHARLLKSHLSAFLATKLLHMYEKCGSLKDAVKVFDEMTERTIF 111
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------A 303
WN+++ AFV SG+ ++A++L +++ V V + T SVL AC L A
Sbjct: 112 TWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVA 171
Query: 304 LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIF--VLMPHKNLVSWNVMISVY 353
+ G G FV NALI MYG+CG + +R +F ++M ++ VSWN +IS +
Sbjct: 172 VKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAH 223
>gi|255549932|ref|XP_002516017.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544922|gb|EEF46437.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 472
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 128/248 (51%), Gaps = 24/248 (9%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D ++ L++ Y C L + F KI +++L WN ++ GYA G E L +
Sbjct: 121 DRVLAPKLVNLYCICNSLCEARLLFDKIPKRNLFLWNVLIRGYAWYGPYEASIQLY--YK 178
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGF 237
+ + P+ + VL AC+ + ++ G+ IH V+R I + + CG
Sbjct: 179 IFDYGLVPDNFTFPFVLKACSALSAIEDGRLIHEQVMRSGWERDVFVGAALIDMYSKCGC 238
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
V + VF++ RD V+WNS+++A+ ++G+ +L L ++++A V+P T+V+V+ A
Sbjct: 239 VDNAREVFHKFPVRDAVLWNSMLAAYSQNGKPDKSLALCSEMVLAGVRPTEATLVTVISA 298
Query: 298 CLKLAALPQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
+AALPQG F W LIDMY +CG ++ ++ +F + KN+VSW
Sbjct: 299 SADIAALPQGRELHGFAWRRRFESNDKVKTTLIDMYAKCGTMKVAQNLFEQLRDKNVVSW 358
Query: 347 NVMISVYG 354
N +I+ Y
Sbjct: 359 NAIITGYA 366
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 83/327 (25%), Positives = 142/327 (43%), Gaps = 65/327 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G Q+HA L G++ L +L+ ++C W ++ Y
Sbjct: 106 GKQLHASLCHVGLQFDRVLAPKLVNLYCICNSLCEARLLFDKIPKRNLFLWNVLIRGYAW 165
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G YE + L+Y + D G+ PD+F P V KACS L G+ +++ ++ +E + V
Sbjct: 166 YGPYEASIQLYYKIFDYGLVPDNFTFPFVLKACSALSAIEDGRLIHEQVMRSGWERDVFV 225
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L+D++ KCG ++ +F K +D V
Sbjct: 226 GAALIDMYSKCGCVDNAREVFH------------------------------KFPVRDAV 255
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
WN+MLA Y+ G ++ L EM+ ++P +L V++A A + + G+ +HG
Sbjct: 256 LWNSMLAAYSQNGKPDKSLALCS--EMVLAGVRPTEATLVTVISASADIAALPQGRELHG 313
Query: 223 YVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+ R I + CG + + ++F QL ++VV WN+II+ + G +
Sbjct: 314 FAWRRRFESNDKVKTTLIDMYAKCGTMKVAQNLFEQLRDKNVVSWNAIITGYAMHGYSNE 373
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPAC 298
L +L D + KP+ +T V VL AC
Sbjct: 374 VL-ILFDRMREEAKPDHITFVGVLLAC 399
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 102/230 (44%), Gaps = 54/230 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+E G +H ++ G E F+G+ L++++ W SM+
Sbjct: 204 IEDGRLIHEQVMRSGWERDVFVGAALIDMYSKCGCVDNAREVFHKFPVRDAVLWNSMLAA 263
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y+ G ++ + L M+ GVRP V A +++ G++++ + +FE N
Sbjct: 264 YSQNGKPDKSLALCSEMVLAGVRPTEATLVTVISASADIAALPQGRELHGFAWRRRFESN 323
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
VK +LID YAKC +KV+ F +++ K
Sbjct: 324 DKVK------------------------------TTLIDMYAKCGTMKVAQNLFEQLRDK 353
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
++VSWNA++ GYA+ G+ EV L D M + + +P+ I+ GVL AC+
Sbjct: 354 NVVSWNAIITGYAMHGYSNEVLILFDRM---REEAKPDHITFVGVLLACS 400
>gi|357120534|ref|XP_003561982.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Brachypodium distachyon]
Length = 989
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 96/364 (26%), Positives = 170/364 (46%), Gaps = 59/364 (16%)
Query: 14 CGVELCAFLGSQLLEV--FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKV 71
CG ++ Q +EV +W +++ Y + E V LF+ M +G++ D +
Sbjct: 491 CGELSSSYKLFQKMEVRMLISWNTIISGYAEIRDLEASVKLFFQMRQEGLQFDVVTLIGL 550
Query: 72 YKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFL 131
+ S +D VG+ ++ L +K G + D
Sbjct: 551 ISSISVAEDTTVGESLHS-------------------LAVKSG-----------CNMDIS 580
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
+ N+LI Y+ C ++ F + ++ VS+N ++ GY EE+ L +M++
Sbjct: 581 LTNTLITMYSNCGSVEACQRLFDNLSSRNTVSYNVLMTGYRKNNLSEEILPLF--RQMVK 638
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTAC-GFVIC---------- 240
+ +PN I++ +L C + + GK++H Y +R+ L T+ IC
Sbjct: 639 NEQEPNHITVLNLLPVC---QNHQQGKSVHCYAIRNFSTLETSFFTSAICMYSRFNNVDY 695
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
SC +FN + R+++VWN+I+SA V+ A D R + N+KP+ VT++S++ AC +
Sbjct: 696 SCKLFNSVGERNIIVWNAILSACVQCKLADTAFDFFRQMHFLNMKPDEVTMMSLVSACAQ 755
Query: 301 LAA-----------LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L L +G G V NALIDM+ RCG++ +R++F K+ V+W+ M
Sbjct: 756 LGNSDLGECVTALILQKGFGGTLLVVNALIDMHSRCGSLSFARELFDSSVVKDSVTWSAM 815
Query: 350 ISVY 353
I+ Y
Sbjct: 816 INSY 819
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 152/332 (45%), Gaps = 56/332 (16%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G++ E+++L+ + G D+F P V KAC+ + +G++++ ++ EGN V+
Sbjct: 121 GFHRELLDLYRTLCTFG--SDNFTFPPVIKACAAVSCLPLGREMHCRVLRTGHEGNVGVQ 178
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
LLD+ YAK ++ S F + QKDL+S
Sbjct: 179 TALLDM------------------------------YAKAGWIGASRTVFDFMGQKDLIS 208
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
WNAM++GY+L G E EM+ Q M+ N +L + AC G ++H +
Sbjct: 209 WNAMISGYSLNGSLREAVEATQEMQ--QDGMRANASTLVCIAGACGAAGDSDAGGSLHAF 266
Query: 224 VLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
L+ I L A + S +F+ +D+V +NS+ISA+++ G+ ++
Sbjct: 267 ALKCGVLGDESLAPALISLYAALDDLSSSRVLFDLQHVKDLVSYNSMISAYMQHGKWKES 326
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKL-----------AALPQGLGTGSFVWNALIDM 321
D+ R + A + PN VT++SVLP C + GL V +AL+ M
Sbjct: 327 FDVFRQMHCAGLGPNLVTVISVLPTCSDFFGVNLGDSVHGMVIKFGLAEQISVVSALVSM 386
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
Y + G + ++ +F KN + WN +IS Y
Sbjct: 387 YSKLGELDSAKHLFDSCTEKNNLLWNSIISGY 418
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 90/356 (25%), Positives = 155/356 (43%), Gaps = 57/356 (16%)
Query: 21 FLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD 80
F+G + L +W +M+ Y++ G E V M G+R + + AC D
Sbjct: 200 FMGQKDL---ISWNAMISGYSLNGSLREAVEATQEMQQDGMRANASTLVCIAGACGAAGD 256
Query: 81 YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFY 140
G ++ + + KCG + D + +LI Y
Sbjct: 257 SDAGGSLHAFAL-------------------KCGVL-----------GDESLAPALISLY 286
Query: 141 AKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTIS 200
A L S F KDLVS+N+M++ Y G +E ++ +M + PN ++
Sbjct: 287 AALDDLSSSRVLFDLQHVKDLVSYNSMISAYMQHGKWKESFDVFRQMHC--AGLGPNLVT 344
Query: 201 LSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLS 249
+ VL C+ GV LG ++HG V++ + + + G + + +F+ +
Sbjct: 345 VISVLPTCSDFFGVNLGDSVHGMVIKFGLAEQISVVSALVSMYSKLGELDSAKHLFDSCT 404
Query: 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----LKLA-- 302
++ ++WNSIIS ++ + + ALD + + NV P+ T++ V+ C L++A
Sbjct: 405 EKNNLLWNSIISGYLVNNEWNMALDTFCKMQIENVAPDATTVIKVIYGCRHIKDLRMAKS 464
Query: 303 ----ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
A+ V NAL+ MYG CG + S K+F M + L+SWN +IS Y
Sbjct: 465 IHAYAVRNRFELNQSVMNALLAMYGDCGELSSSYKLFQKMEVRMLISWNTIISGYA 520
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/339 (22%), Positives = 150/339 (44%), Gaps = 51/339 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ Y V + ++ F M + V PD KV C +KD R+ K ++ Y +
Sbjct: 411 WNSIISGYLVNNEWNMALDTFCKMQIENVAPDATTVIKVIYGCRHIKDLRMAKSIHAYAV 470
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+FE N V N+L+ Y C L S+
Sbjct: 471 RNRFELNQSVM------------------------------NALLAMYGDCGELSSSYKL 500
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F K++ + L+SWN +++GYA E L +M Q +Q + ++L G++++ + +
Sbjct: 501 FQKMEVRMLISWNTIISGYAEIRDLEASVKLF--FQMRQEGLQFDVVTLIGLISSISVAE 558
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+G+++H ++ I + + CG V +F+ LS+R+ V +N +++
Sbjct: 559 DTTVGESLHSLAVKSGCNMDISLTNTLITMYSNCGSVEACQRLFDNLSSRNTVSYNVLMT 618
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC--------LKLAALPQGLGTGSF 313
+ ++ + L L R ++ +PN +T++++LP C + A+ +
Sbjct: 619 GYRKNNLSEEILPLFRQMVKNEQEPNHITVLNLLPVCQNHQQGKSVHCYAIRNFSTLETS 678
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+ + I MY R + S K+F + +N++ WN ++S
Sbjct: 679 FFTSAICMYSRFNNVDYSCKLFNSVGERNIIVWNAILSA 717
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/332 (20%), Positives = 139/332 (41%), Gaps = 65/332 (19%)
Query: 40 YNVL--GYY-----EEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
YNVL GY EEI+ LF M+ P+H + C ++++ GK V+ Y I
Sbjct: 613 YNVLMTGYRKNNLSEEILPLFRQMVKNEQEPNHITVLNLLPVC---QNHQQGKSVHCYAI 669
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F ++ F S I Y++ + S
Sbjct: 670 RN----------------------------FSTLETSFFT--SAICMYSRFNNVDYSCKL 699
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+ + +++++ WNA+L+ + + +M + +M+P+ +++ +++ACAQ+
Sbjct: 700 FNSVGERNIIVWNAILSACVQCKLADTAFDFFRQMHFL--NMKPDEVTMMSLVSACAQLG 757
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
LG+ + +L+ I + + CG + + +F+ +D V W+++I+
Sbjct: 758 NSDLGECVTALILQKGFGGTLLVVNALIDMHSRCGSLSFARELFDSSVVKDSVTWSAMIN 817
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC------------LKLAALPQGLG 309
++ G AL + +I + VKP+ +T V +L AC K + G+
Sbjct: 818 SYSMHGDCESALAIFSMMIDSGVKPDDITFVIILSACSHSGFVEQARALFKSLQIDHGIT 877
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK 341
+ ++D+ GR G + ++ + M +
Sbjct: 878 PRMEHYACMVDLLGRSGHLDEAYDVVRSMSFR 909
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 105/219 (47%), Gaps = 26/219 (11%)
Query: 157 KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKL 216
++ + S N + ++ GF E+ +L + +D + V+ ACA V + L
Sbjct: 103 RRPTVYSLNLAVRCFSDHGFHRELLDLYRTLCTFGSD----NFTFPPVIKACAAVSCLPL 158
Query: 217 GKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVR 265
G+ +H VLR ++ + TA G++ S +VF+ + +D++ WN++IS +
Sbjct: 159 GREMHCRVLRTGHEGNVGVQTALLDMYAKAGWIGASRTVFDFMGQKDLISWNAMISGYSL 218
Query: 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQGLGTGSFV 314
+G + +A++ +++ ++ N T+V + AC L AL G+ +
Sbjct: 219 NGSLREAVEATQEMQQDGMRANASTLVCIAGACGAAGDSDAGGSLHAFALKCGVLGDESL 278
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
ALI +Y + SR +F L K+LVS+N MIS Y
Sbjct: 279 APALISLYAALDDLSSSRVLFDLQHVKDLVSYNSMISAY 317
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY---- 88
W++M+ Y++ G E + +F +MID GV+PD + ACS + ++
Sbjct: 812 WSAMINSYSMHGDCESALAIFSMMIDSGVKPDDITFVIILSACSHSGFVEQARALFKSLQ 871
Query: 89 -DYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLID-FYAKCRY 145
D+ I+ + E AC ++DL + G ++ + M F + SL++ CR+
Sbjct: 872 IDHGITPRMEHYAC----MVDLLGRSGHLDEAYDVVRSM--SFRPSESLLESLLGACRF 924
>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
Length = 716
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 154/330 (46%), Gaps = 55/330 (16%)
Query: 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL 107
+ + L+ M ++G+ D F+ + AC++L+ G+ +++++I F
Sbjct: 13 QALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFR---------- 62
Query: 108 DLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAM 167
D + +L+ YAKC L + F ++ KDL +W+++
Sbjct: 63 --------------------TDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSI 102
Query: 168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH 227
+A YA G E L MI ++PN ++ + L CA V G+ G+AIH +L
Sbjct: 103 IAAYARAGRGEMAVVLY--RRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILAS 160
Query: 228 HI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL 276
+ ++ C ++ + VF + R+V + ++ISA+V++G+ +AL+L
Sbjct: 161 KVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELF 220
Query: 277 -RDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGR 324
R V ++PN T ++L A L L +G T V NAL+ MYG+
Sbjct: 221 SRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGK 280
Query: 325 CGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
CG+ ++RK+F M +N++SW MI+ Y
Sbjct: 281 CGSPVEARKVFDSMTARNVISWTSMIAAYA 310
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/397 (22%), Positives = 173/397 (43%), Gaps = 80/397 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+E G ++H HLI+ G L + LL+++ W+S++
Sbjct: 46 LEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAA 105
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPD--HFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
Y G E V L+ MI +GV P+ F C C+ + G+ ++ +++ K
Sbjct: 106 YARAGRGEMAVVLYRRMIAEGVEPNVVTFAC--ALGGCASVAGLADGRAIHQRILASK-- 161
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
+ QD ++ +SL++ Y KC + + F +K
Sbjct: 162 ----------------------------VPQDDVLQDSLLNMYLKCDEMVEARKVFEGMK 193
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+++ S+ AM++ Y G E L M ++ ++PN + + +L A + ++ G
Sbjct: 194 ARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEA-IEPNAYTFATILGAVEGLGNLEKG 252
Query: 218 KAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
+ +H ++ + + CG + + VF+ ++ R+V+ W S+I+A+ +
Sbjct: 253 RKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQH 312
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA--------- 317
G +AL+L + + +V+P+ V+ S L AC L AL +G V A
Sbjct: 313 GNPQEALNLFKRM---DVEPSGVSFSSALNACALLGALDEGREIHHRVVEANLASPQMET 369
Query: 318 -LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L+ MY RCG++ +R++F M ++ S N MI+ +
Sbjct: 370 SLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAF 406
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 153/344 (44%), Gaps = 59/344 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
++T+M+ Y G + E + LF M + + P+ + + A L + G+ V+ +
Sbjct: 199 SYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRH 258
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ S F D + +V N+L+ Y KC +
Sbjct: 259 LASRGF------------------------------DTNVVVQNALVTMYGKCGSPVEAR 288
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + ++++SW +M+A YA G +E NL M D++P+ +S S L ACA
Sbjct: 289 KVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRM-----DVEPSGVSFSSALNACAL 343
Query: 211 VKGVKLGKAIHGYVLRHHI---HLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ + G+ IH V+ ++ + T+ CG + + VFN++ TRD N++I
Sbjct: 344 LGALDEGREIHHRVVEANLASPQMETSLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMI 403
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK----------LAALPQGLGT 310
+AF + G+ AL + R + + + +T VSVL AC L +L G
Sbjct: 404 AAFTQHGRKKQALRIYRKMEQEGIPADGITFVSVLVACSHTSLVADCRDFLQSLVMDHGV 463
Query: 311 GSFVWNAL--IDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMIS 351
V + L +D+ GR G + + ++ MP++ + V+W ++S
Sbjct: 464 VPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQADAVAWMTLLS 507
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 57/107 (53%), Gaps = 11/107 (10%)
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------G 307
+I+A VR G+ + AL+L ++ + + + S++ AC KL AL + G
Sbjct: 1 MIAACVREGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITG 60
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
T + AL+ MY +CG++ ++++F M K+L +W+ +I+ Y
Sbjct: 61 FRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYA 107
>gi|414884271|tpg|DAA60285.1| TPA: hypothetical protein ZEAMMB73_421255 [Zea mays]
Length = 686
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 99/403 (24%), Positives = 188/403 (46%), Gaps = 52/403 (12%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGM-------------YNVL---- 43
+ +G+Q+H + G+ + L LL + + S++ YNVL
Sbjct: 74 IRIGLQLHGLSLSAGLSCYSHLLPHLLSFYSHHPSLLPTASSLAAGSTSPEPYNVLISAC 133
Query: 44 ---GYYEEIVNLFYLMIDK-GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
G + + M+DK V PD F PKV +AC+E D +G+ V+ + +G+
Sbjct: 134 LNHGLPRHALAAYQKMVDKDAVPPDAFTYPKVLRACAETADLVLGRAVHVRAAAAGMDGH 193
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIK- 157
+ L+ ++ KCG + +F+ MD +D + NS+I YA + + F +++
Sbjct: 194 LFFQNALVSMYAKCGDLAAARRVFDGMDNRDVVSWNSMISGYAASGQWREAVELFRQMQA 253
Query: 158 ---QKDLVSWNAMLAGY-ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG 213
+ + V+WN + GY + +R + + D M++ + + ++L AC++
Sbjct: 254 EGAEANSVTWNTIAGGYIQMRDYRAALGLIRD---MVRGGAEVDFVTLVIGSNACSRAGW 310
Query: 214 VKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISA 262
++LGK IHG +R H + C + + +F + +V WN++++
Sbjct: 311 LRLGKEIHGLAVRMQCHEIDSVVNAVITMYARCNDMERALMLFRTMRCPGLVAWNTMLAG 370
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTG 311
F A L R+++ ++V+PN VT+V+ L C ++A L QG
Sbjct: 371 FALLDDAEAASRLFREMVCSDVQPNYVTVVTYLALCARVANLQHGQELHAHIIRQGFKRY 430
Query: 312 SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+WN+LIDMY + G + ++ +F M ++++S+ MI+ YG
Sbjct: 431 CLLWNSLIDMYSKSGRLSVAQNVFDTMDDRDMISFTSMIAGYG 473
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 80/340 (23%), Positives = 158/340 (46%), Gaps = 38/340 (11%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y G + E V LF M +G + + +++DYR + M
Sbjct: 227 SWNSMISGYAASGQWREAVELFRQMQAEGAEANSVTWNTIAGGYIQMRDYRAALGLIRDM 286
Query: 92 ISIKFE---------GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAK 142
+ E NAC + L L + + + E+D V N++I YA+
Sbjct: 287 VRGGAEVDFVTLVIGSNACSRAGWLRLGKEIHGLAVRMQC-HEIDS---VVNAVITMYAR 342
Query: 143 CRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLS 202
C ++ + F ++ LV+WN MLAG+AL E + L EM+ +D+QPN +++
Sbjct: 343 CNDMERALMLFRTMRCPGLVAWNTMLAGFALLDDAEAASRLF--REMVCSDVQPNYVTVV 400
Query: 203 GVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTR 251
LA CA+V ++ G+ +H +++R I + + G + + +VF+ + R
Sbjct: 401 TYLALCARVANLQHGQELHAHIIRQGFKRYCLLWNSLIDMYSKSGRLSVAQNVFDTMDDR 460
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ----- 306
D++ + S+I+ + G+ + +L + +I + + P+ + +V+VL AC + +
Sbjct: 461 DMISFTSMIAGYGMQGKGIVSLRFFKQMIDSGIMPDAIIMVTVLSACSHSGLVDEGEELF 520
Query: 307 -------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
G+ ++ ++D+Y R G ++K+ ++ P
Sbjct: 521 DKMVSSYGIKPQMEHYSCMVDLYARAGLLEKAEELLNQTP 560
>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Vitis vinifera]
Length = 633
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 93/394 (23%), Positives = 174/394 (44%), Gaps = 79/394 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF----------------------CNWTSMMGMYN 41
G+Q+HAH+I G+E F+G+ LL ++ +WTSM+ Y
Sbjct: 78 GLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYV 137
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+G + LF+ M+ GV P+ F V KACSEL D ++G+ + ++ F
Sbjct: 138 RVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGF----- 192
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
D ++++ ++LID + + L + F ++ + D
Sbjct: 193 -------------------------DSNYVIASALIDMHGRNCALDDARQLFDELLEPDA 227
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
+ W ++++ F +E M+ M P+ + VL AC + +K GK +H
Sbjct: 228 ICWTSIISALTRNDFFDEALRFFYSMQR-DHGMCPDGFTFGTVLTACGNLGRLKQGKEVH 286
Query: 222 GYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
V+ + + CG V S +F+++ ++ V W++++ + ++G
Sbjct: 287 AKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFK 346
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGSF----VWNALI 319
+ + R + K + ++L C LAA+ QG + G + V +AL+
Sbjct: 347 SVIQIFRKM----EKVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALV 402
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
D+Y +CG I+ ++ IF MP +NL++WN MI +
Sbjct: 403 DLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGF 436
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/352 (23%), Positives = 155/352 (44%), Gaps = 63/352 (17%)
Query: 7 VHAHLIVCGVELCAFLGSQLLE--VFCNWTSMMGMYNVLGYYEEIVNLFYLMI-DKGVRP 63
+ H C ++ L +LLE C WTS++ +++E + FY M D G+ P
Sbjct: 203 IDMHGRNCALDDARQLFDELLEPDAIC-WTSIISALTRNDFFDEALRFFYSMQRDHGMCP 261
Query: 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLF 123
D F V AC L + GK+V+ +I+ F GN
Sbjct: 262 DGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNV----------------------- 298
Query: 124 EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNL 183
+V +SL+D Y KC + S F ++ K+ VSW+A+L GY G + V +
Sbjct: 299 -------VVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQI 351
Query: 184 LDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLS 232
+ME + + +L CA + V+ GK +H +R + L
Sbjct: 352 FRKMEKV------DLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLY 405
Query: 233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
CG + + ++F+Q+ R+++ WNS+I F ++G+ +AL + ++ +KP+ ++ +
Sbjct: 406 AKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFI 465
Query: 293 SVLPACLKLAALPQ------------GLGTGSFVWNALIDMYGRCGAIQKSR 332
+L AC + + G+ G ++ ++D+ GR G ++++
Sbjct: 466 GILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAE 517
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 88/187 (47%), Gaps = 28/187 (14%)
Query: 194 MQPNTISLSGVLAA-----CAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSC------ 242
+ P IS VL A C +V G IH +V++ + G + +
Sbjct: 50 IDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGT 109
Query: 243 ------SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296
VF+ L +DV+ W S+IS +VR G+ +++L+L ++ V+PN T+ +V+
Sbjct: 110 DFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIK 169
Query: 297 ACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
AC +L L +G + + +ALIDM+GR A+ +R++F + + +
Sbjct: 170 ACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAIC 229
Query: 346 WNVMISV 352
W +IS
Sbjct: 230 WTSIISA 236
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
S+ L+ D S I +SG++ AL LL+ + + V S+L C K+
Sbjct: 14 SLLTPLNLSDNTNPFSKILQLCKSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVL 73
Query: 303 ALPQGLGTGS-----------FVWNALIDMYGRCGA-IQKSRKIFVLMPHKNLVSWNVMI 350
A GL + FV N+L+ +Y + G ++RK+F + K+++SW MI
Sbjct: 74 AFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMI 133
Query: 351 SVY 353
S Y
Sbjct: 134 SGY 136
>gi|302782465|ref|XP_002973006.1| hypothetical protein SELMODRAFT_98207 [Selaginella moellendorffii]
gi|300159607|gb|EFJ26227.1| hypothetical protein SELMODRAFT_98207 [Selaginella moellendorffii]
Length = 698
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 95/352 (26%), Positives = 171/352 (48%), Gaps = 31/352 (8%)
Query: 28 EVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDV 87
+V C W++M+ + G+ E + L+ MI VRP+ V AC+ L D G V
Sbjct: 156 DVLC-WSTMISAEAMAGHDREALELYREMI-LSVRPNASTLATVLAACTRLGDLSSGALV 213
Query: 88 YDYMISIKFEGNACVKRPLLDLFIKCGR-MEITSGLFEEMDQDFLVN-NSLIDFYAKCRY 145
D I + +A V L++L+ + G + LF+ M +V+ N+++ +A+
Sbjct: 214 RDGAIQSGLDRDAVVGTTLVNLYARFGDVIAAREVLFDSMKDRTVVSWNAMVTAFAQNAR 273
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
+ + F ++ K ++SWNAM+AG+ G ++ L M++ +QP+ ++ VL
Sbjct: 274 VDEAEKLFREMPDKSVISWNAMIAGFGQNGRPKQALELFRRMDL--EGLQPSRMTYCSVL 331
Query: 206 AACAQVKGVKLGKAI---HGYVLRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVV 255
ACA + LG+ I L I ++ + CG + F +++ RDVV
Sbjct: 332 DACANLTASSLGRFICDGMDEALAKDISVANSICNMYGKCGLPELARQTFLEMTYRDVVS 391
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LG 309
W +II+A+ ++G +ALD+ R ++ A V+PN +T+++ L AC A +G L
Sbjct: 392 WTAIIAAYSQNGYSSEALDIFRIMVQAGVEPNGITLINTLSACSHGALFDEGSDIFSSLV 451
Query: 310 TGSFV--------WNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
+G + + ID+ GR G ++ + + MP K V+W ++S
Sbjct: 452 SGDYYGVTANESHFLCAIDLLGRAGYLKDAETLITKMPFKAGAVAWTSLLSA 503
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/378 (22%), Positives = 180/378 (47%), Gaps = 59/378 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKG--VRPDHFVCPKVYKACSELKDYRVGKDVYD 89
+W ++ Y G +E + L+ ++ ++ D F+ V AC+ LK G ++++
Sbjct: 25 SWAIIISAYVGAGKEQEALCLYRTLVRSSTEIQADAFIFSSVLAACARLKCLEQGLEIHE 84
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKV 148
++ + + ++ L+ ++ KCGR++ +F+ + +D + N+++ A+ +L+V
Sbjct: 85 RIVKRGVKQDVGLQNALVTMYAKCGRIDRAKQVFDRITHRDVVSWNAMVSANAEAGHLEV 144
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
+ + ++ D++ W+ M++ A+ G E L EM + ++PN +L+ VLAAC
Sbjct: 145 ALKIYQEMVSADVLCWSTMISAEAMAGHDREALELYREMIL---SVRPNASTLATVLAAC 201
Query: 209 AQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSV-FNQLSTRDVVVW 256
++ + G + ++ ++L G VI + V F+ + R VV W
Sbjct: 202 TRLGDLSSGALVRDGAIQSGLDRDAVVGTTLVNLYARFGDVIAAREVLFDSMKDRTVVSW 261
Query: 257 NSIISAFVRSGQVVD-------------------------------ALDLLRDVIVANVK 285
N++++AF ++ +V + AL+L R + + ++
Sbjct: 262 NAMVTAFAQNARVDEAEKLFREMPDKSVISWNAMIAGFGQNGRPKQALELFRRMDLEGLQ 321
Query: 286 PNTVTIVSVLPACLKLAA----------LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIF 335
P+ +T SVL AC L A + + L V N++ +MYG+CG + +R+ F
Sbjct: 322 PSRMTYCSVLDACANLTASSLGRFICDGMDEALAKDISVANSICNMYGKCGLPELARQTF 381
Query: 336 VLMPHKNLVSWNVMISVY 353
+ M ++++VSW +I+ Y
Sbjct: 382 LEMTYRDVVSWTAIIAAY 399
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 123/269 (45%), Gaps = 55/269 (20%)
Query: 140 YAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI 199
Y C L+ + F + ++ SW +++ Y G +E L + T++Q +
Sbjct: 2 YRDCGRLEDARAVFDSMPLRNEFSWAIIISAYVGAGKEQEALCLYRTLVRSSTEIQADAF 61
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQL 248
S VLAACA++K ++ G IH +++ + + CG + + VF+++
Sbjct: 62 IFSSVLAACARLKCLEQGLEIHERIVKRGVKQDVGLQNALVTMYAKCGRIDRAKQVFDRI 121
Query: 249 STRDVVVWNSIISAFVRSGQV-------------------------------VDALDLLR 277
+ RDVV WN+++SA +G + +AL+L R
Sbjct: 122 THRDVVSWNAMVSANAEAGHLEVALKIYQEMVSADVLCWSTMISAEAMAGHDREALELYR 181
Query: 278 DVIVANVKPNTVTIVSVLPACLKL-----------AALPQGLGTGSFVWNALIDMYGRCG 326
++I++ V+PN T+ +VL AC +L A+ GL + V L+++Y R G
Sbjct: 182 EMILS-VRPNASTLATVLAACTRLGDLSSGALVRDGAIQSGLDRDAVVGTTLVNLYARFG 240
Query: 327 AIQKSRKI-FVLMPHKNLVSWNVMISVYG 354
+ +R++ F M + +VSWN M++ +
Sbjct: 241 DVIAAREVLFDSMKDRTVVSWNAMVTAFA 269
>gi|222635654|gb|EEE65786.1| hypothetical protein OsJ_21486 [Oryza sativa Japonica Group]
Length = 749
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 94/385 (24%), Positives = 167/385 (43%), Gaps = 70/385 (18%)
Query: 4 GIQVHAHLIVCG-----VELCA--FLGSQLLEVF----CNWTSMMGMYNVLGYYEEIVNL 52
G +VH HL+ +L LG+ L+ ++ +W S++ + G + + L
Sbjct: 63 GRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRNPVSWASVIAAHVQNGRAGDALGL 122
Query: 53 FYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIK 112
F M+ G D F +AC+EL D G+ V+ +
Sbjct: 123 FSSMLRSGTAADQFALGSAVRACTELGDVGTGRQVHAH---------------------- 160
Query: 113 CGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYA 172
L E D +V N+L+ Y+K + F +IK KDL+SW +++AG+A
Sbjct: 161 --------ALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFA 212
Query: 173 LGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS 232
GF E + EM +++ PN AC V + G+ IHG +++ +
Sbjct: 213 QQGFEMEALQVFREM-IVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRD 271
Query: 233 TACGFVICSCS--------------VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRD 278
+V CS S F ++ D+V WNSI++A+ G + +AL L +
Sbjct: 272 L---YVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSE 328
Query: 279 VIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------VWNALIDMYGRCGA 327
+ + ++P+ +T+ +L AC+ AL G S+ V N+L+ MY RC
Sbjct: 329 MRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSD 388
Query: 328 IQKSRKIFVLMPHKNLVSWNVMISV 352
+ + +F + +++V+WN +++
Sbjct: 389 LSSAMDVFHEIKDQDVVTWNSILTA 413
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 151/346 (43%), Gaps = 57/346 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ Y+V G E + LF M D G+RPD + AC VG+D
Sbjct: 305 SWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCAC-------VGRDAL--- 354
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ G R + +K G +D D V NSL+ YA+C L +
Sbjct: 355 ----YHG-----RLIHSYLVKLG-----------LDGDVSVCNSLLSMYARCSDLSSAMD 394
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +IK +D+V+WN++L A EEV L + + + + ISL+ VL+A A++
Sbjct: 395 VFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSL--DRISLNNVLSASAEL 452
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQL-STRDVVVWNSI 259
++ K +H Y + I CG + + +F + + RDV W+S+
Sbjct: 453 GYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSL 512
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW---- 315
I + + G +A DL + ++PN VT + VL AC ++ + +G S +
Sbjct: 513 IVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYG 572
Query: 316 --------NALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ ++D+ R G + ++ MP +++ W +++
Sbjct: 573 IVPTREHCSCIVDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAA 618
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 98/218 (44%), Gaps = 25/218 (11%)
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
++ VSW +++A + G + L M +++ + +L + AC ++ V G+
Sbjct: 98 RNPVSWASVIAAHVQNGRAGDALGLFSSM--LRSGTAADQFALGSAVRACTELGDVGTGR 155
Query: 219 AIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
+H + L+ + + + G V +F ++ +D++ W SII+ F + G
Sbjct: 156 QVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFAQQG 215
Query: 268 QVVDALDLLRDVIV-ANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVW 315
++AL + R++IV + PN S AC + + G L +V
Sbjct: 216 FEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVG 275
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+L DMY RC + +R F + +LVSWN +++ Y
Sbjct: 276 CSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAY 313
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 83/169 (49%), Gaps = 20/169 (11%)
Query: 202 SGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTAC--GFVICSCSVFNQLST---RDVVVW 256
+ +++AC++++ + G+ +H RH + S++ + + + N L T R+ V W
Sbjct: 48 AALVSACSRLRSLPQGRRVH----RHLVASSSSSPDAQLAGNTVLGNHLITMYGRNPVSW 103
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALP 305
S+I+A V++G+ DAL L ++ + + + S + AC +L AL
Sbjct: 104 ASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQVHAHALK 163
Query: 306 QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G+ V NAL+ MY + G + +F + K+L+SW +I+ +
Sbjct: 164 SERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFA 212
>gi|15231572|ref|NP_189286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273843|sp|Q9LRV2.1|PP256_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g26540
gi|9293933|dbj|BAB01836.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332643655|gb|AEE77176.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 700
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 162/344 (47%), Gaps = 29/344 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W ++ Y +G+ +E V +F+ M++ VRP + V ACS VGK ++
Sbjct: 230 SWNVIVRRYLEMGFNDEAVVMFFKMLELNVRPLNHTVSSVMLACSRSLALEVGKVIHAIA 289
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSH 150
+ + + V + D+++KC R+E +F++ +D S + YA + +
Sbjct: 290 VKLSVVADTVVSTSVFDMYVKCDRLESARRVFDQTRSKDLKSWTSAMSGYAMSGLTREAR 349
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP-NTISLSGVLAACA 209
F + ++++VSWNAML GY E LD + +++ +++ + ++L +L C+
Sbjct: 350 ELFDLMPERNIVSWNAMLGGYVHA---HEWDEALDFLTLMRQEIENIDNVTLVWILNVCS 406
Query: 210 QVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLST-RDVVVWN 257
+ V++GK HG++ RH + + CG + + F Q+S RD V WN
Sbjct: 407 GISDVQMGKQAHGFIYRHGYDTNVIVANALLDMYGKCGTLQSANIWFRQMSELRDEVSWN 466
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF---- 313
++++ R G+ AL + V KP+ T+ ++L C + AL G F
Sbjct: 467 ALLTGVARVGRSEQALSFFEGMQV-EAKPSKYTLATLLAGCANIPALNLGKAIHGFLIRD 525
Query: 314 -------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ A++DMY +C + ++F ++L+ WN +I
Sbjct: 526 GYKIDVVIRGAMVDMYSKCRCFDYAIEVFKEAATRDLILWNSII 569
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 153/332 (46%), Gaps = 57/332 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+G Y ++E ++ LM + D+ + CS + D ++GK + ++
Sbjct: 362 SWNAMLGGYVHAHEWDEALDFLTLMRQEIENIDNVTLVWILNVCSGISDVQMGKQAHGFI 421
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ D + +V N+L+D Y KC L+ ++
Sbjct: 422 YRHGY------------------------------DTNVIVANALLDMYGKCGTLQSANI 451
Query: 152 KFSKIKQ-KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ + +D VSWNA+L G A G E+ + + M Q + +P+ +L+ +LA CA
Sbjct: 452 WFRQMSELRDEVSWNALLTGVARVGRSEQALSFFEGM---QVEAKPSKYTLATLLAGCAN 508
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACG------FVICSC-----SVFNQLSTRDVVVWNSI 259
+ + LGKAIHG+++R + + C C VF + +TRD+++WNSI
Sbjct: 509 IPALNLGKAIHGFLIRDGYKIDVVIRGAMVDMYSKCRCFDYAIEVFKEAATRDLILWNSI 568
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----- 314
I R+G+ + +L + VKP+ VT + +L AC++ + G S +
Sbjct: 569 IRGCCRNGRSKEVFELFMLLENEGVKPDHVTFLGILQACIREGHVELGFQYFSSMSTKYH 628
Query: 315 -------WNALIDMYGRCGAIQKSRKIFVLMP 339
++ +I++Y + G + + + +LMP
Sbjct: 629 ISPQVEHYDCMIELYCKYGCLHQLEEFLLLMP 660
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 81/374 (21%), Positives = 154/374 (41%), Gaps = 86/374 (22%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ G +E+ +F M GVR V K+C + D R+ + ++ +
Sbjct: 129 SWNAVITACAQNGVSDEVFRMFRRMNRDGVRATETSFAGVLKSCGLILDLRLLRQLHCAV 188
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + GN +DL S++D Y KCR + +
Sbjct: 189 VKYGYSGN-------VDL-----------------------ETSIVDVYGKCRVMSDARR 218
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I VSWN ++ Y GF +E + +M++ +++P ++S V+ AC++
Sbjct: 219 VFDEIVNPSDVSWNVIVRRYLEMGFNDEAVVMF--FKMLELNVRPLNHTVSSVMLACSRS 276
Query: 212 KGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSII 260
+++GK IH ++ + T C + + VF+Q ++D+ W S +
Sbjct: 277 LALEVGKVIHAIAVKLSVVADTVVSTSVFDMYVKCDRLESARRVFDQTRSKDLKSWTSAM 336
Query: 261 SAFVRSGQVVDALDLL-----RDVIVANV--------------------------KPNTV 289
S + SG +A +L R+++ N + V
Sbjct: 337 SGYAMSGLTREARELFDLMPERNIVSWNAMLGGYVHAHEWDEALDFLTLMRQEIENIDNV 396
Query: 290 TIVSVLPACLKLAALPQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIFVLM 338
T+V +L C ++ + G F++ NAL+DMYG+CG +Q + F M
Sbjct: 397 TLVWILNVCSGISDVQMGKQAHGFIYRHGYDTNVIVANALLDMYGKCGTLQSANIWFRQM 456
Query: 339 PH-KNLVSWNVMIS 351
++ VSWN +++
Sbjct: 457 SELRDEVSWNALLT 470
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 120/254 (47%), Gaps = 25/254 (9%)
Query: 123 FEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTN 182
F + FL+N + I+ Y KC + + F ++ ++D SWNA++ A G +EV
Sbjct: 90 FSPLPPIFLLNRA-IEAYGKCGCVDDARELFEEMPERDGGSWNAVITACAQNGVSDEVFR 148
Query: 183 LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH----HIHLSTACGFV 238
+ M + ++ S +GVL +C + ++L + +H V+++ ++ L T+ V
Sbjct: 149 MFRRMN--RDGVRATETSFAGVLKSCGLILDLRLLRQLHCAVVKYGYSGNVDLETSIVDV 206
Query: 239 ICSCSV-------FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI 291
C V F+++ V WN I+ ++ G +A+ + ++ NV+P T+
Sbjct: 207 YGKCRVMSDARRVFDEIVNPSDVSWNVIVRRYLEMGFNDEAVVMFFKMLELNVRPLNHTV 266
Query: 292 VSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340
SV+ AC + AL G + + V ++ DMY +C ++ +R++F
Sbjct: 267 SSVMLACSRSLALEVGKVIHAIAVKLSVVADTVVSTSVFDMYVKCDRLESARRVFDQTRS 326
Query: 341 KNLVSWNVMISVYG 354
K+L SW +S Y
Sbjct: 327 KDLKSWTSAMSGYA 340
>gi|302822082|ref|XP_002992701.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
gi|300139547|gb|EFJ06286.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
Length = 941
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 95/354 (26%), Positives = 153/354 (43%), Gaps = 67/354 (18%)
Query: 31 CNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
C WT+++ Y G E + M +G+R + V CS L+ GK V+
Sbjct: 178 CTWTTVIAAYTRHGKLECAFATWSKMHQEGLRSNEITFLTVLDTCSSLEVLETGKHVH-- 235
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKC-RYLKVS 149
R+ + SGL D + NSLI Y KC R+ +
Sbjct: 236 ------------------------RLALGSGL----DFSLRMENSLISMYGKCSRHPDEA 267
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F +I + ++SW+A +A Y G E + M + ++PN +L+ VL ACA
Sbjct: 268 REVFLRISRPSVISWSAFIAAY---GQHWEAIKTFELMNL--EGVKPNATTLTSVLRACA 322
Query: 210 QVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
V + G+ IH VL L C V + VF+ + +D V WN+
Sbjct: 323 TVGAHEQGRRIHALVLAGPYTQNTTVLNAAASLYAKCSRVADASRVFSSIPCKDAVSWNA 382
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------ 306
I+SA+ + G DA+ L R + V P+ +T +++L +C + A L Q
Sbjct: 383 IVSAYAKQGLFRDAIFLSRQMQVEGFVPDDITFITILYSCSQSALLKQYGNSKSLTDGRQ 442
Query: 307 --------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
GL +++ N L+ MYGRCG++ +R F + +N+ SW ++IS+
Sbjct: 443 VHSQMISNGLDGDTYLGNLLVQMYGRCGSLDDARAAFQGIHQRNVFSWTILISL 496
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 95/348 (27%), Positives = 153/348 (43%), Gaps = 51/348 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSE---LKDYRVGKDVY 88
+W +++ Y G + + + L M +G PD + +CS+ LK Y K +
Sbjct: 379 SWNAIVSAYAKQGLFRDAIFLSRQMQVEGFVPDDITFITILYSCSQSALLKQYGNSKSLT 438
Query: 89 DYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKV 148
D GR + + +D D + N L+ Y +C L
Sbjct: 439 D------------------------GRQVHSQMISNGLDGDTYLGNLLVQMYGRCGSLDD 474
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
+ F I Q+++ SW +++ G E LL M++ T + N I+ +L AC
Sbjct: 475 ARAAFQGIHQRNVFSWTILISLLVQNGEASEGLELLKSMDLEGT--EANKITFISLLGAC 532
Query: 209 AQVKGVKLGKAIHGYV----LRHHIHLSTACGFVICSCS-------VFNQLSTRDVVVWN 257
+ + LGK IH + L I S A + +C VF ++ RDVV W
Sbjct: 533 SVTGDLSLGKTIHERIRTKGLESDIITSNALLNMYTTCESLDEARLVFERMVFRDVVSWT 592
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQ 306
IISA+ +G ++AL L R + +P+ VT++SVL AC L AL
Sbjct: 593 IIISAYAHAGYPLEALQLYRRMEQEFSRPDAVTLISVLEACASLRALVEGKAIHERIVAS 652
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G+ T FV A++ YG+C A++ +R++F + K++V WN MI Y
Sbjct: 653 GVETDVFVGTAVVSFYGKCEAVEDARQVFDRILDKDIVCWNAMIGAYA 700
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/395 (23%), Positives = 178/395 (45%), Gaps = 76/395 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G QVH+ +I G++ +LG+ L++++ +WT ++ +
Sbjct: 440 GRQVHSQMISNGLDGDTYLGNLLVQMYGRCGSLDDARAAFQGIHQRNVFSWTILISLLVQ 499
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G E + L M +G + + ACS D +GK +++ I+ +G
Sbjct: 500 NGEASEGLELLKSMDLEGTEANKITFISLLGACSVTGDLSLGKTIHE---RIRTKG---- 552
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
++ D + +N+L++ Y C L + F ++ +D+V
Sbjct: 553 -----------------------LESDIITSNALLNMYTTCESLDEARLVFERMVFRDVV 589
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW +++ YA G+ E L ME Q +P+ ++L VL ACA ++ + GKAIH
Sbjct: 590 SWTIIISAYAHAGYPLEALQLYRRME--QEFSRPDAVTLISVLEACASLRALVEGKAIHE 647
Query: 223 YVLRHHIHLSTACGFVICS----CS-------VFNQLSTRDVVVWNSIISAFVRSGQVVD 271
++ + G + S C VF+++ +D+V WN++I A+ ++
Sbjct: 648 RIVASGVETDVFVGTAVVSFYGKCEAVEDARQVFDRILDKDIVCWNAMIGAYAQNHCEEK 707
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQGLGTGSFVWNALID 320
A L +++ + PN VT++++L +C L A +G + + V NALI+
Sbjct: 708 AFALYLEMVENQMPPNDVTLITLLDSCSSTCKMERGSSLHREAAARGYLSHTSVVNALIN 767
Query: 321 MYGRC-GAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
MY +C G ++ ++ F + KN+VSW+ +++ Y
Sbjct: 768 MYAKCCGNLEAAQTAFESVASKNVVSWSSIVAAYA 802
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 139/306 (45%), Gaps = 55/306 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT ++ Y GY E + L+ M + RPD V +AC+ L+ GK +++ +
Sbjct: 590 SWTIIISAYAHAGYPLEALQLYRRMEQEFSRPDAVTLISVLEACASLRALVEGKAIHERI 649
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
++ SG+ + D V +++ FY KC ++ +
Sbjct: 650 VA--------------------------SGV----ETDVFVGTAVVSFYGKCEAVEDARQ 679
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I KD+V WNAM+ YA E+ L +EM++ M PN ++L +L +C+
Sbjct: 680 VFDRILDKDIVCWNAMIGAYAQNHCEEKAFALY--LEMVENQMPPNDVTLITLLDSCSST 737
Query: 212 KGVKLGKAIH------GYVLRHHIHLSTA--------CGFVICSCSVFNQLSTRDVVVWN 257
++ G ++H GY+ H + A CG + + + F +++++VV W+
Sbjct: 738 CKMERGSSLHREAAARGYL--SHTSVVNALINMYAKCCGNLEAAQTAFESVASKNVVSWS 795
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA 317
SI++A+ R+G+ A +L + V PN VT SVL AC +G W+
Sbjct: 796 SIVAAYARNGEEDRARNLFWTMNQDGVLPNIVTFTSVLHACSHAGLADEG-------WSY 848
Query: 318 LIDMYG 323
+ M G
Sbjct: 849 FLSMQG 854
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/319 (24%), Positives = 142/319 (44%), Gaps = 55/319 (17%)
Query: 59 KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEI 118
+GV D AC+ L D GK ++ ++S
Sbjct: 4 EGVPGDEITLLNAVSACAALGDSLQGKQIHARILS------------------------- 38
Query: 119 TSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFRE 178
SGL L++NSL+ Y KC ++ + F ++ ++DL+SWNAM+ YA +
Sbjct: 39 -SGL----GASVLLSNSLVYMYGKCGSVEEARNAFDRMPERDLISWNAMITVYAQHECGK 93
Query: 179 EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH---------- 228
+ L + T +P+ ++ + +L AC +K G+ +H + L
Sbjct: 94 QAIQLYAYSRLEGT--KPDEVTFASLLNACFASGDLKFGRMLHEHFLGTSFVSDQIVCNG 151
Query: 229 -IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
I + + CG + + +VF DV W ++I+A+ R G++ A + ++ N
Sbjct: 152 LISMYSDCGSLDDATAVFEWSFRPDVCTWTTVIAAYTRHGKLECAFATWSKMHQEGLRSN 211
Query: 288 TVTIVSVLPACLKLAALPQG-------LGTG-SF---VWNALIDMYGRCGA-IQKSRKIF 335
+T ++VL C L L G LG+G F + N+LI MYG+C ++R++F
Sbjct: 212 EITFLTVLDTCSSLEVLETGKHVHRLALGSGLDFSLRMENSLISMYGKCSRHPDEAREVF 271
Query: 336 VLMPHKNLVSWNVMISVYG 354
+ + +++SW+ I+ YG
Sbjct: 272 LRISRPSVISWSAFIAAYG 290
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/395 (20%), Positives = 160/395 (40%), Gaps = 79/395 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNV 42
G Q+HA ++ G+ L + L+ ++ +W +M+ +Y
Sbjct: 29 GKQIHARILSSGLGASVLLSNSLVYMYGKCGSVEEARNAFDRMPERDLISWNAMITVYAQ 88
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
++ + L+ +G +PD + AC D + G+ ++++ + F + V
Sbjct: 89 HECGKQAIQLYAYSRLEGTKPDEVTFASLLNACFASGDLKFGRMLHEHFLGTSFVSDQIV 148
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L+ ++ CG ++ + +FE F + D+
Sbjct: 149 CNGLISMYSDCGSLDDATAVFE--------------------------WSF----RPDVC 178
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH- 221
+W ++A Y G E +M Q ++ N I+ VL C+ ++ ++ GK +H
Sbjct: 179 TWTTVIAAYTRHGKLECAFATWSKMH--QEGLRSNEITFLTVLDTCSSLEVLETGKHVHR 236
Query: 222 ---GYVLRHHIHLSTACGFVICSCS--------VFNQLSTRDVVVWNSIISAFVRSGQVV 270
G L + + + + CS VF ++S V+ W++ I+A+ + + +
Sbjct: 237 LALGSGLDFSLRMENSLISMYGKCSRHPDEAREVFLRISRPSVISWSAFIAAYGQHWEAI 296
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALI 319
+L+ + VKPN T+ SVL AC + A QG + V NA
Sbjct: 297 KTFELMN---LEGVKPNATTLTSVLRACATVGAHEQGRRIHALVLAGPYTQNTTVLNAAA 353
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+Y +C + + ++F +P K+ VSWN ++S Y
Sbjct: 354 SLYAKCSRVADASRVFSSIPCKDAVSWNAIVSAYA 388
>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
Length = 708
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 93/394 (23%), Positives = 174/394 (44%), Gaps = 79/394 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF----------------------CNWTSMMGMYN 41
G+Q+HAH+I G+E F+G+ LL ++ +WTSM+ Y
Sbjct: 137 GLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYV 196
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+G + LF+ M+ GV P+ F V KACSEL D ++G+ + ++ F
Sbjct: 197 RVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGF----- 251
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
D ++++ ++LID + + L + F ++ + D
Sbjct: 252 -------------------------DSNYVIASALIDMHGRNCALDDARQLFDELLEPDA 286
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
+ W ++++ F +E M+ M P+ + VL AC + +K GK +H
Sbjct: 287 ICWTSIISALTRNDFFDEALRFFYSMQR-DHGMCPDGFTFGTVLTACGNLGRLKQGKEVH 345
Query: 222 GYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
V+ + + CG V S +F+++ ++ V W++++ + ++G
Sbjct: 346 AKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFK 405
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGSF----VWNALI 319
+ + R + K + ++L C LAA+ QG + G + V +AL+
Sbjct: 406 SVIQIFRKM----EKVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALV 461
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
D+Y +CG I+ ++ IF MP +NL++WN MI +
Sbjct: 462 DLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGF 495
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/352 (23%), Positives = 155/352 (44%), Gaps = 63/352 (17%)
Query: 7 VHAHLIVCGVELCAFLGSQLLE--VFCNWTSMMGMYNVLGYYEEIVNLFYLMI-DKGVRP 63
+ H C ++ L +LLE C WTS++ +++E + FY M D G+ P
Sbjct: 262 IDMHGRNCALDDARQLFDELLEPDAIC-WTSIISALTRNDFFDEALRFFYSMQRDHGMCP 320
Query: 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLF 123
D F V AC L + GK+V+ +I+ F GN
Sbjct: 321 DGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNV----------------------- 357
Query: 124 EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNL 183
+V +SL+D Y KC + S F ++ K+ VSW+A+L GY G + V +
Sbjct: 358 -------VVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQI 410
Query: 184 LDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLS 232
+ME + + +L CA + V+ GK +H +R + L
Sbjct: 411 FRKMEKV------DLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLY 464
Query: 233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
CG + + ++F+Q+ R+++ WNS+I F ++G+ +AL + ++ +KP+ ++ +
Sbjct: 465 AKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFI 524
Query: 293 SVLPACLKLAALPQ------------GLGTGSFVWNALIDMYGRCGAIQKSR 332
+L AC + + G+ G ++ ++D+ GR G ++++
Sbjct: 525 GILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAE 576
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 88/187 (47%), Gaps = 28/187 (14%)
Query: 194 MQPNTISLSGVLAA-----CAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSC------ 242
+ P IS VL A C +V G IH +V++ + G + +
Sbjct: 109 IDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGT 168
Query: 243 ------SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296
VF+ L +DV+ W S+IS +VR G+ +++L+L ++ V+PN T+ +V+
Sbjct: 169 DFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIK 228
Query: 297 ACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
AC +L L +G + + +ALIDM+GR A+ +R++F + + +
Sbjct: 229 ACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAIC 288
Query: 346 WNVMISV 352
W +IS
Sbjct: 289 WTSIISA 295
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 12/108 (11%)
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS----- 312
S I +SG++ AL LL+ + + V S+L C K+ A GL +
Sbjct: 88 SKILQLCKSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKS 147
Query: 313 ------FVWNALIDMYGRCGA-IQKSRKIFVLMPHKNLVSWNVMISVY 353
FV N+L+ +Y + G ++RK+F + K+++SW MIS Y
Sbjct: 148 GLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGY 195
>gi|212275047|ref|NP_001130303.1| uncharacterized protein LOC100191397 [Zea mays]
gi|194688792|gb|ACF78480.1| unknown [Zea mays]
Length = 706
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 100/388 (25%), Positives = 172/388 (44%), Gaps = 68/388 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL--KDYRVGK---- 85
++T+MMG G ++ + LF M G+R D V AC++ DY V +
Sbjct: 109 SFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQL 168
Query: 86 --DVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYA- 141
++ ++ F + V L+DL+ K +M+ +FE + +V+ N LI Y
Sbjct: 169 AQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQ 228
Query: 142 ----------------------------------KCRYLKVSHCKFSKIKQKDLVSWNAM 167
K R + + F KI + + +WN +
Sbjct: 229 LGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIPKPSVTTWNTL 288
Query: 168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH 227
L+GY +E +L M+ ++QP+ +L+ +L++C+++ +LGK +H +R
Sbjct: 289 LSGYGQEELHQETIDLFRRMQ--HQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVRL 346
Query: 228 HIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL 276
+H + + CG V + +FN ++ RDVV WNS+IS +A D L
Sbjct: 347 LLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFL 406
Query: 277 RDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGS----FVWNALIDMYGRC 325
+ + + P + S++ C +L+++PQG L G +V +LIDMY +
Sbjct: 407 KQMRENGMFPTESSYASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKS 466
Query: 326 GAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G + +R F M KNLV+WN MI Y
Sbjct: 467 GNMDDARLFFNCMIVKNLVAWNEMIHGY 494
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/344 (21%), Positives = 148/344 (43%), Gaps = 56/344 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +++ Y ++E ++LF M + V+PD + +CS L ++ +GK V+ +
Sbjct: 285 WNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASV 344
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ D+F+ G LID Y+KC + ++
Sbjct: 345 RLLLHN---------DMFVASG---------------------LIDIYSKCGQVGIALII 374
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+ + ++D+V WN+M++G A+ EE + L +M + M P S + ++ CA++
Sbjct: 375 FNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMR--ENGMFPTESSYASMINLCARLS 432
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ G+ +H VL+ I + G + + FN + +++V WN +I
Sbjct: 433 SIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIVKNLVAWNEMIH 492
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK----------LAALPQGLGTG 311
+ ++G A++L ++ KP++VT ++VL C ++ G
Sbjct: 493 GYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAVTFFNSMESNYGIT 552
Query: 312 SFV--WNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
V + LID R + + MP+K + + W V+++
Sbjct: 553 PLVEHYTCLIDALARAARFAEVEAVIGKMPYKDDPILWEVLLAA 596
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/347 (21%), Positives = 141/347 (40%), Gaps = 58/347 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ G E + ++ M+ +G+ P +F V AC + G+ +
Sbjct: 8 SWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLA 67
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + +G+ V N L+ Y KC + +
Sbjct: 68 VKVGLDGHQ------------------------------FVENGLLGMYTKCGSVADAVR 97
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + + VS+ AM+ G A GG ++ L M +T ++ + +++S VL ACAQ
Sbjct: 98 LFDGMPSPNEVSFTAMMGGLAQGGAVDDALRLFARMS--RTGIRVDPVAVSSVLGACAQA 155
Query: 212 --------KGVKLGKAIHGYVLRHHIHLSTACGFVIC-----------SCSVFNQLSTRD 252
+ ++L ++IH V+R G + + VF LS+
Sbjct: 156 CAGDYNVARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVS 215
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG--- 309
+V WN +I+ + + G A+++L + + +PN VT ++L +C+K +P
Sbjct: 216 IVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIKARDVPSARAMFD 275
Query: 310 ----TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
WN L+ YG+ Q++ +F M H+N+ ++V
Sbjct: 276 KIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAV 322
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 107/229 (46%), Gaps = 32/229 (13%)
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
+ ++ VSWN ++A A G E + M+Q + P +L+ VL+AC V +
Sbjct: 1 MPDRNAVSWNTVIAAVARSGSPGEALEMY--QGMLQEGLAPTNFTLASVLSACGAVAALD 58
Query: 216 LGKAIHGYVLR-----HH------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
G+ HG ++ H + + T CG V + +F+ + + + V + +++
Sbjct: 59 DGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLA 118
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-------------------LP 305
+ G V DAL L + ++ + V + SVL AC + A +
Sbjct: 119 QGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVR 178
Query: 306 QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+G G+ V N+L+D+Y + + ++ K+F + ++VSWN++I+ YG
Sbjct: 179 KGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYG 227
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 27/217 (12%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGV 61
ELG QVH+ + + F+ S L+++ Y+ G + +F +M ++ V
Sbjct: 334 ELGKQVHSASVRLLLHNDMFVASGLIDI----------YSKCGQVGIALIIFNMMTERDV 383
Query: 62 RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRME-ITS 120
VC S L + + ++ +D++ ++ G + + C R+ I
Sbjct: 384 -----VCWN--SMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMINLCARLSSIPQ 436
Query: 121 G-------LFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYAL 173
G L + DQ+ V SLID YAK + + F+ + K+LV+WN M+ GYA
Sbjct: 437 GRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIVKNLVAWNEMIHGYAQ 496
Query: 174 GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
GF E+ L + M+ T +P++++ VL C+
Sbjct: 497 NGFGEKAVELFE--YMLTTKQKPDSVTFIAVLTGCSH 531
>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1026
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 83/332 (25%), Positives = 161/332 (48%), Gaps = 26/332 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W SM+ G E + ++ M + VRP+ + +CS+++D +GK+ + Y+
Sbjct: 226 TWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYI 285
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSH 150
E + L+D+++KCG + LF+ M Q LV+ +++ YA+ +L V+
Sbjct: 286 KEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAR 345
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
KI +K +V WNA+++G +E L EM+ I+T ++P+ +++ L+AC+Q
Sbjct: 346 EILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQ-IRT-IEPDKVTMVNCLSACSQ 403
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ + +G IH Y+ RH + + A CG + + VF ++ R+ + W ++
Sbjct: 404 LGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAV 463
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----- 314
I G DAL +I + P+ +T + VL AC + +G S +
Sbjct: 464 ICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFN 523
Query: 315 -------WNALIDMYGRCGAIQKSRKIFVLMP 339
++ ++D+ GR G ++++ ++ MP
Sbjct: 524 VSPKLKHYSCMVDLLGRAGHLEEAEELVKNMP 555
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 133/275 (48%), Gaps = 55/275 (20%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D V+N+ I C L V++ F+K + +DLV+WN+M+ G G E + EME
Sbjct: 192 DIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEME 251
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA-----------CGF 237
++PN I++ G++++C+QV+ + LGK H Y+ H + + CG
Sbjct: 252 --AEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGE 309
Query: 238 VICSCSVFNQLSTR-------------------------------DVVVWNSIISAFVRS 266
++ + +F+ ++ + VV WN+IIS V++
Sbjct: 310 LLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQA 369
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------W 315
Q +AL L ++ + ++P+ VT+V+ L AC +L AL G+ ++
Sbjct: 370 KQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALG 429
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
AL+DMY +CG I ++ ++F +P +N ++W +I
Sbjct: 430 TALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVI 464
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 133/281 (47%), Gaps = 30/281 (10%)
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNS-----LIDFYAKCRYLKVSHCK--FSK 155
+ PLL + +C + + +M L+ N L+ F A ++ +C +
Sbjct: 57 ENPLLSILERCKSLVQLKQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILYR 116
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
IK+ ++ SWNA + GY G E L M ++ ++P+ + +L C
Sbjct: 117 IKELNVFSWNAAIRGYVESGDIEGGFMLYKRM-LLGGTLKPDNHTYPLLLKGCCGQYSSC 175
Query: 216 LGKAIHGYVLR---------HHIHLST--ACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
LG + G+VL+ H+ ++ +CG + + VFN+ RD+V WNS+I+ V
Sbjct: 176 LGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCV 235
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSF 313
+ G ++A+ + +++ V+PN +T++ ++ +C ++ L GL
Sbjct: 236 KRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIP 295
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ NAL+DMY +CG + +R +F M K LVSW M+ Y
Sbjct: 296 LTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYA 336
>gi|7262690|gb|AAF43948.1|AC012188_25 Contains similarity to a hypothetical protein from Arabidopsis
thaliana gb|AC004044.1 and contains two domains PF|01535
of unknown function [Arabidopsis thaliana]
Length = 455
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 152/305 (49%), Gaps = 14/305 (4%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G+ E+ + LF M+ GVRP+ V ACS D + + + +
Sbjct: 146 SWNAMLSGYAQNGFTEDALRLFNDMLRLGVRPNETTWVIVISACSFRADPSLTRSLVKLI 205
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM--DQDFLVNNSLIDFYAKCRYLKVS 149
+ N VK LLD+ KC ++ +F E+ ++ + N++I Y + + +
Sbjct: 206 DEKRVRLNCFVKTALLDMHAKCRDIQSARRIFNELGTQRNLVTWNAMISGYTRIGDMSSA 265
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + ++++VSWN+++AGYA G ++M + D +P+ +++ VL+AC
Sbjct: 266 RQLFDTMPKRNVVSWNSLIAGYAHNGQAALAIEFFEDM-IDYGDSKPDEVTMISVLSACG 324
Query: 210 QVKGVKLGKAIHGYVLRHHIHLSTAC-----------GFVICSCSVFNQLSTRDVVVWNS 258
+ ++LG I Y+ ++ I L+ + G + + VF+++ RDVV +N+
Sbjct: 325 HMADLELGDCIVDYIRKNQIKLNDSGYRSLIFMYARGGNLWEAKRVFDEMKERDVVSYNT 384
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNAL 318
+ +AF +G V+ L+LL + ++P+ VT SVL AC + L +G + N L
Sbjct: 385 LFTAFAANGDGVETLNLLSKMKDEGIEPDRVTYTSVLTACNRAGLLKEGQRIFKSIRNPL 444
Query: 319 IDMYG 323
D Y
Sbjct: 445 ADHYA 449
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/382 (22%), Positives = 165/382 (43%), Gaps = 94/382 (24%)
Query: 60 GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEIT 119
G+ PD F P V K+ R G + + F + V+ ++D+++K +E
Sbjct: 16 GIMPDAFSFPVVIKSAG-----RFGILFQALVEKLGFFKDPYVRNVIMDMYVKHESVESA 70
Query: 120 SGLFEEMDQ--------------------------DFLVNNSLIDF------YAKCRYLK 147
+F+++ Q D + N ++ + +AK + L+
Sbjct: 71 RKVFDQISQRKGSDWNVMISGYWKWGNKEEACKLFDMMPENDVVSWTVMITGFAKVKDLE 130
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
+ F ++ +K +VSWNAML+GYA GF E+ L + +M++ ++PN + V++A
Sbjct: 131 NARKYFDRMPEKSVVSWNAMLSGYAQNGFTEDALRLFN--DMLRLGVRPNETTWVIVISA 188
Query: 208 CAQVKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLST------ 250
C+ L +++ + + L+ C + + +FN+L T
Sbjct: 189 CSFRADPSLTRSLVKLIDEKRVRLNCFVKTALLDMHAKCRDIQSARRIFNELGTQRNLVT 248
Query: 251 --------------------------RDVVVWNSIISAFVRSGQVVDALDLLRDVI-VAN 283
R+VV WNS+I+ + +GQ A++ D+I +
Sbjct: 249 WNAMISGYTRIGDMSSARQLFDTMPKRNVVSWNSLIAGYAHNGQAALAIEFFEDMIDYGD 308
Query: 284 VKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSR 332
KP+ VT++SVL AC +A L G ++ + +LI MY R G + +++
Sbjct: 309 SKPDEVTMISVLSACGHMADLELGDCIVDYIRKNQIKLNDSGYRSLIFMYARGGNLWEAK 368
Query: 333 KIFVLMPHKNLVSWNVMISVYG 354
++F M +++VS+N + + +
Sbjct: 369 RVFDEMKERDVVSYNTLFTAFA 390
>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
small; Tetratricopeptide-like helical [Medicago
truncatula]
Length = 971
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 83/332 (25%), Positives = 161/332 (48%), Gaps = 26/332 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W SM+ G E + ++ M + VRP+ + +CS+++D +GK+ + Y+
Sbjct: 226 TWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYI 285
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSH 150
E + L+D+++KCG + LF+ M Q LV+ +++ YA+ +L V+
Sbjct: 286 KEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAR 345
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
KI +K +V WNA+++G +E L EM+ I+T ++P+ +++ L+AC+Q
Sbjct: 346 EILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQ-IRT-IEPDKVTMVNCLSACSQ 403
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ + +G IH Y+ RH + + A CG + + VF ++ R+ + W ++
Sbjct: 404 LGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAV 463
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----- 314
I G DAL +I + P+ +T + VL AC + +G S +
Sbjct: 464 ICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFN 523
Query: 315 -------WNALIDMYGRCGAIQKSRKIFVLMP 339
++ ++D+ GR G ++++ ++ MP
Sbjct: 524 VSPKLKHYSCMVDLLGRAGHLEEAEELVKNMP 555
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 133/275 (48%), Gaps = 55/275 (20%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D V+N+ I C L V++ F+K + +DLV+WN+M+ G G E + EME
Sbjct: 192 DIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEME 251
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS-----------TACGF 237
++PN I++ G++++C+QV+ + LGK H Y+ H + + CG
Sbjct: 252 --AEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGE 309
Query: 238 VICSCSVFNQLSTR-------------------------------DVVVWNSIISAFVRS 266
++ + +F+ ++ + VV WN+IIS V++
Sbjct: 310 LLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQA 369
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------W 315
Q +AL L ++ + ++P+ VT+V+ L AC +L AL G+ ++
Sbjct: 370 KQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALG 429
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
AL+DMY +CG I ++ ++F +P +N ++W +I
Sbjct: 430 TALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVI 464
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 133/281 (47%), Gaps = 30/281 (10%)
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNS-----LIDFYAKCRYLKVSHCK--FSK 155
+ PLL + +C + + +M L+ N L+ F A ++ +C +
Sbjct: 57 ENPLLSILERCKSLVQLKQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILYR 116
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
IK+ ++ SWNA + GY G E L M ++ ++P+ + +L C
Sbjct: 117 IKELNVFSWNAAIRGYVESGDIEGGFMLYKRM-LLGGTLKPDNHTYPLLLKGCCGQYSSC 175
Query: 216 LGKAIHGYVLR---------HHIHLST--ACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
LG + G+VL+ H+ ++ +CG + + VFN+ RD+V WNS+I+ V
Sbjct: 176 LGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCV 235
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSF 313
+ G ++A+ + +++ V+PN +T++ ++ +C ++ L GL
Sbjct: 236 KRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIP 295
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ NAL+DMY +CG + +R +F M K LVSW M+ Y
Sbjct: 296 LTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYA 336
>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 740
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 97/405 (23%), Positives = 183/405 (45%), Gaps = 63/405 (15%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+ LG Q+H +I G E +GS LL+++ + ++MG
Sbjct: 152 VSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGG 211
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
G E+ + LF +G+ D + K L + K+ + +K EG
Sbjct: 212 LLACGMIEDALQLF-----RGMEKDSVSWSAMIKG---LAQNGMEKEAIECFREMKIEGL 263
Query: 100 ACVKRPLLDLFIKCGRM-------EITSGLFEEMDQDFL-VNNSLIDFYAKCRYLKVSHC 151
+ P + CG + +I + + QD + V ++LID Y KC+ L +
Sbjct: 264 KMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKT 323
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++KQK++VSW AM+ GY G E + ++M ++ + P+ +L ++ACA +
Sbjct: 324 VFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIF--LDMQRSGIDPDHYTLGQAISACANI 381
Query: 212 KGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
++ G HG + H+I +S + CG + S +FN+++ RD V W +++
Sbjct: 382 SSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMV 441
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA--- 317
SA+ + G+ V+A+ L ++ +KP+ VT+ V+ AC + + +G + N
Sbjct: 442 SAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGI 501
Query: 318 ---------LIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
+ID++ R G I+++ MP + + + W ++S
Sbjct: 502 VPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSA 546
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 150/296 (50%), Gaps = 30/296 (10%)
Query: 83 VGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYA 141
+GK ++ +I + FE V PLLD++ K G + +F +D ++ ++ N+L+
Sbjct: 154 LGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLL 213
Query: 142 KCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM--EMIQTDMQPNTI 199
C ++ + F + +KD VSW+AM+ G A G +E EM E ++ D P
Sbjct: 214 ACGMIEDALQLFRGM-EKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYP--- 269
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTACGFVICSC-------SVFNQL 248
VL AC + + G+ IH ++R HI++ +A + C C +VF+++
Sbjct: 270 -FGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRM 328
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG- 307
++VV W +++ + ++G+ +A+ + D+ + + P+ T+ + AC +++L +G
Sbjct: 329 KQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGS 388
Query: 308 ------LGTGSF----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ G V N+L+ +YG+CG I S ++F M ++ VSW M+S Y
Sbjct: 389 QFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAY 444
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 125/289 (43%), Gaps = 60/289 (20%)
Query: 122 LFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEV 180
+F+ + Q L + N+L+ Y+K +L F K+ +D V+WN ++ GY+L G V
Sbjct: 60 VFDGIPQPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGL---V 116
Query: 181 TNLLDEMEMIQTDMQPN--TISLSGVLAACAQVKGVKLGKAIHGYVL------------- 225
+ + D N ++L +L + V LGK IHG V+
Sbjct: 117 GAAVKAYNTMMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSP 176
Query: 226 -----------------------RHHIHLST------ACGFVICSCSVFNQLSTRDVVVW 256
R+ + +T ACG + + +F + +D V W
Sbjct: 177 LLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGME-KDSVSW 235
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG--------- 307
+++I ++G +A++ R++ + +K + SVLPAC L A+ G
Sbjct: 236 SAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIR 295
Query: 308 --LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L +V +ALIDMY +C + ++ +F M KN+VSW M+ YG
Sbjct: 296 TNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYG 344
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 158/335 (47%), Gaps = 35/335 (10%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNVLG 44
Q+HA +I G+ L +L+ ++ W ++ + G
Sbjct: 45 QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTING 104
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
E+ + L+ M+ +G+ D F P V KAC+ +GK V+ +I F G+ V+
Sbjct: 105 LSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQN 164
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
L+D + KCG +FE+M +V+ ++I C L+ + F +I K++VS
Sbjct: 165 NLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVS 224
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
W AM+ GY EE L M+ ++ PN ++ ++ AC ++ + LG+ IH Y
Sbjct: 225 WTAMINGYIRNQQPEEALELFKRMQA--ENIFPNEYTMVSLIKACTEMGILTLGRGIHDY 282
Query: 224 VLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
+++ ++L TA CG + + VF + + + WNS+I++ G +A
Sbjct: 283 AIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEA 342
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
L+L ++ NVKP+ +T + VL AC+ + + +G
Sbjct: 343 LNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEG 377
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 136/273 (49%), Gaps = 35/273 (12%)
Query: 114 GRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYAL 173
GRM + D V+++LID Y+KC LK + F +I +++VSW +M+ GY
Sbjct: 1161 GRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQ 1220
Query: 174 GGFREEVTNLL--------DEMEMIQTDMQP-NTISLSGVLAACAQVKGVKLGKAIHGYV 224
E+ N L +E E+ + P +++ + VL+AC++V G + + +HG+V
Sbjct: 1221 N---EQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFV 1277
Query: 225 LRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
++ S CG + S VF+ + +D + WNS+I+ + +SG +AL
Sbjct: 1278 VKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEAL 1337
Query: 274 DLLRDVIV-ANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDM 321
++ ++ V+ N VT+ +VL AC AL G L V ++IDM
Sbjct: 1338 EVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDM 1397
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
Y +CG ++ ++K F M KN+ SW M++ YG
Sbjct: 1398 YCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYG 1430
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/400 (23%), Positives = 167/400 (41%), Gaps = 84/400 (21%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY-- 40
G H V G E F+ S L++++ +WTSM+ Y
Sbjct: 1161 GRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQ 1220
Query: 41 -----NVLGYYEEIVNLFYLMIDKGVRP-DHFVCPKVYKACSELKDYRVGKDVYDYMISI 94
N L +++ + + D P D V V ACS + + + V+ +++
Sbjct: 1221 NEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKK 1280
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFS 154
F+G+ V N+L+D YAKC VS F
Sbjct: 1281 GFDGS------------------------------IGVGNTLMDAYAKCGQPLVSKKVFD 1310
Query: 155 KIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGV 214
+++KD +SWN+M+A YA G E + M + ++ N ++LS VL ACA +
Sbjct: 1311 WMEEKDDISWNSMIAVYAQSGLSGEALEVFHGM-VRHVGVRYNAVTLSAVLLACAHAGAL 1369
Query: 215 KLGKAIHGYVLRHHIHLSTACGFVI----CSC-------SVFNQLSTRDVVVWNSIISAF 263
+ GK IH V++ + + G I C C F+++ ++V W ++++ +
Sbjct: 1370 RAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGY 1429
Query: 264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTG 311
G+ +ALD+ ++ A VKPN +T VSVL AC + +G + G
Sbjct: 1430 GMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPG 1489
Query: 312 SFVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMI 350
+ ++D++GR G + ++ + M K + V W ++
Sbjct: 1490 IEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLL 1529
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 130/290 (44%), Gaps = 59/290 (20%)
Query: 118 ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFR 177
I SGL D L+ LI Y+ + + F +I+ +WN ++ + G
Sbjct: 51 IRSGL----SNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLS 106
Query: 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH---------- 227
E+ L+ M+ + + + V+ AC + LGK +HG ++++
Sbjct: 107 EQA--LMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQN 164
Query: 228 ----------HIHLS----------------------TACGFVICSCSVFNQLSTRDVVV 255
H + +CG + + +F+++ +++VV
Sbjct: 165 NLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVS 224
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG------ 309
W ++I+ ++R+ Q +AL+L + + N+ PN T+VS++ AC ++ L G G
Sbjct: 225 WTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAI 284
Query: 310 -----TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G ++ ALIDMY +CG+I+ + ++F MP K+L +WN MI+ G
Sbjct: 285 KNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLG 334
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 32/197 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ Y EE + LF M + + P+ + + KAC+E+ +G+ ++DY
Sbjct: 224 SWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYA 283
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I C I G++ + +LID Y+KC +K +
Sbjct: 284 IK------------------NC----IEIGVY--------LGTALIDMYSKCGSIKDAIE 313
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +K L +WN+M+ + G +E NL EME + +++P+ I+ GVL AC +
Sbjct: 314 VFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERV--NVKPDAITFIGVLCACVHI 371
Query: 212 KGVKLGKAIHGYVLRHH 228
K VK G A + +H+
Sbjct: 372 KNVKEGCAYFTRMTQHY 388
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 119/269 (44%), Gaps = 57/269 (21%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-GVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W SM+ +Y G E + +F+ M+ GVR + V AC+ R GK ++D
Sbjct: 1319 SWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQ 1378
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+I + E N CV S+ID Y KC ++++
Sbjct: 1379 VIKMDLEYNVCV------------------------------GTSIIDMYCKCGRVEMAK 1408
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++K+K++ SW AM+AGY + G +E ++ +M++ ++PN I+ VLAAC+
Sbjct: 1409 KTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIF--YKMVRAGVKPNYITFVSVLAACSH 1466
Query: 211 VKGVKLGKAIHGY-VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
V+ G H + ++H + C ++ F R+G +
Sbjct: 1467 AGLVEEG--WHWFNAMKHKYDIEPGIEHYGC------------------MVDLFGRAGCL 1506
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+A +L++ + +KP+ V S+L AC
Sbjct: 1507 NEAYNLIKRM---KMKPDFVVWGSLLGAC 1532
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 11/113 (9%)
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---- 307
+V WNS+I+ R G V+AL + + P + + +C L L G
Sbjct: 1106 NVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSH 1165
Query: 308 -------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
T FV +ALIDMY +CG ++ +R +F +P +N+VSW MI+ Y
Sbjct: 1166 QQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGY 1218
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 11/153 (7%)
Query: 210 QVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
K ++ G + + R IHL + G + + +F Q+ WN II A +G
Sbjct: 47 HAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLS 106
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWNAL 318
AL L ++++ + + T V+ AC ++ G FV N L
Sbjct: 107 EQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNL 166
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
ID Y +CG + + K+F M +N+VSW +IS
Sbjct: 167 IDFYFKCGHTRFALKVFEKMRVRNVVSWTTVIS 199
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 35/175 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ G +H +I +E +G+ +++++C +WT+M+
Sbjct: 1369 LRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAG 1428
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD-----YMISI 94
Y + G +E +++FY M+ GV+P++ V ACS G ++ Y I
Sbjct: 1429 YGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEP 1488
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFE--EMDQDFLVNNSLIDFYAKCRYLK 147
E C ++DLF + G + L + +M DF+V SL+ CR K
Sbjct: 1489 GIEHYGC----MVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLL---GACRIHK 1536
>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
Length = 669
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 86/341 (25%), Positives = 157/341 (46%), Gaps = 54/341 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ G++++++ + M +G+ P+ + AC + + G+ VY+
Sbjct: 189 SWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYN-- 246
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ G+ I + D + N+LI Y KC L +
Sbjct: 247 --------------------QVGKFGI--------EADVDIRNALISMYTKCGCLSDALE 278
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + + SWN ++ G+ +E + +EM + + P+ I+L VL+ACAQ+
Sbjct: 279 AFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEM--LLHGVTPDGITLVSVLSACAQL 336
Query: 212 KGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ G +H Y+ + I ++ CG + + VF ++ +DVV W ++
Sbjct: 337 GELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMV 396
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
+V+ Q A +L ++ +A V + + +VS+L AC +L AL +G S++
Sbjct: 397 CGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVA 456
Query: 315 -----WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+AL+DMY +CG I + +IF M HK +SWN MI
Sbjct: 457 KDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMI 497
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 131/247 (53%), Gaps = 24/247 (9%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D V + L+++Y R ++ + F ++ ++D+VSW +M++ A G ++V +L EM+
Sbjct: 155 DVFVMSGLVNYYGAFRSVEEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQ 214
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGF 237
+ PN +++ +L+AC Q + V G+ ++ V + I + T CG
Sbjct: 215 --AEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGC 272
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ + F + R WN++I FV++ + +AL + ++++ V P+ +T+VSVL A
Sbjct: 273 LSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSA 332
Query: 298 CLKLAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
C +L L +G+ S++ N+LI+MY +CG + + ++F M K++VSW
Sbjct: 333 CAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSW 392
Query: 347 NVMISVY 353
VM+ Y
Sbjct: 393 TVMVCGY 399
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 79/345 (22%), Positives = 155/345 (44%), Gaps = 56/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ + ++E + +F M+ GV PD V AC++L + R G V+ Y
Sbjct: 290 SWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSY- 348
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
IK G C D ++ NSLI+ YAKC + +
Sbjct: 349 --IKDNGICC---------------------------DNILTNSLINMYAKCGDMAAAER 379
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +KD+VSW M+ GY G NL +EM++ ++ + ++L +L+AC+Q+
Sbjct: 380 VFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKI--AEVVAHEMALVSLLSACSQL 437
Query: 212 KGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ G+ IH Y+ ++ + CG + + +F ++ + + WN++I
Sbjct: 438 GALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMI 497
Query: 261 SAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVLPACLKLAALPQGLG---------- 309
+G +A++L ++ + + KP+ +T+ +VL AC + + +GL
Sbjct: 498 GGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGMVDEGLRYFYLMSSLGV 557
Query: 310 -TGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ + ++D+ GR G + ++ MP N V W +++
Sbjct: 558 VPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPVIWGSLLAA 602
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 127/292 (43%), Gaps = 39/292 (13%)
Query: 96 FEGNACVKRP----LLDLFIKCGRMEITSGLFEEMDQDFLVNNS--------LIDFYAKC 143
F GNA RP LL C + L + + L ++S L+ A
Sbjct: 6 FHGNASQARPIRHHLLAYLDACASRAHLAELHGRLVRAHLTSDSFVAGRLIALLASPAAR 65
Query: 144 RYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSG 203
++ + F + Q + WN M+ GY+ + + EM + + P+ +++
Sbjct: 66 HDMRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMR--RRGVSPDNYTMAA 123
Query: 204 VLAACAQVKGVKL---GKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLS 249
V++A A G+K G AIH +V+ ++ A V + VF ++
Sbjct: 124 VVSASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEMY 183
Query: 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL- 308
RDVV W S+ISA + G L +L ++ + PN VTI+S+L AC + A+ +G
Sbjct: 184 ERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRW 243
Query: 309 ---GTGSF-------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
G F + NALI MY +CG + + + F MP + SWN +I
Sbjct: 244 VYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLI 295
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 113/267 (42%), Gaps = 54/267 (20%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT M+ Y + NLF M V + ACS+L G++++ Y+
Sbjct: 391 SWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYI 450
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + C++ L+D++ KCG ++ S +F
Sbjct: 451 EEMNVAKDLCLESALVDMYAKCGCIDTASEIFR--------------------------- 483
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
K++ K +SWNAM+ G A G+ +E L D+M +Q D +P+ I+L VL ACA V
Sbjct: 484 ---KMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQ-DPKPDGITLKAVLGACAHV 539
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V G LR + +L ++ G V D + I+ R+G + +
Sbjct: 540 GMVDEG-------LR-YFYLMSSLGVV------------PDTEHYGCIVDLLGRAGMLDE 579
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPAC 298
A ++ + ++PN V S+L AC
Sbjct: 580 AFHFIKKM---PIEPNPVIWGSLLAAC 603
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 14/123 (11%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
VF+ ++ + VWN +I + DAL + R++ V P+ T+ +V+ A A
Sbjct: 74 VFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAG 133
Query: 304 LPQ--------------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L G + FV + L++ YG +++++ K+F M +++VSW M
Sbjct: 134 LKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYERDVVSWTSM 193
Query: 350 ISV 352
IS
Sbjct: 194 ISA 196
>gi|225456719|ref|XP_002268090.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 529
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 163/342 (47%), Gaps = 55/342 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +++ Y EE + ++ + KG++ D + V KAC G+ ++ +
Sbjct: 47 WNTIIRGYLEGNDPEEAILVYNHVRKKGLKVDTYTLVFVIKACGLRPVILEGEQIHGQIF 106
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ FE ++ LL+L+ GLF+E C ++
Sbjct: 107 KLGFEFEVIIQTALLNLY----------GLFDE----------------DCGLQQI---- 136
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ Q+DLV WNA++A YA G +V + +M++++++PN ++ +L+ C+ ++
Sbjct: 137 FDEMPQRDLVMWNALIAAYAHGNCPYKVREV--SYDMVRSNVKPNGVTAVSILSVCSSLR 194
Query: 213 GVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ GKA+HGYV ++ I + CG + + VF + R+VV W S+I+
Sbjct: 195 ALREGKAVHGYVTKNLIEFDVFVHNALIVVYSKCGSIRDAVQVFQLMPMRNVVSWTSLIN 254
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LG 309
+ + +AL + + N++P+ +T++ V+ C KL + G L
Sbjct: 255 GYSDNNCPNEALGFFKQMEAENIRPDEITVLGVVCMCSKLRSFELGEWISQYVVKIGLLK 314
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ NAL+DM+ +CG I ++ +IF M K +VSW +MI
Sbjct: 315 ESPAIANALMDMHAKCGNINRACQIFDGMEEKTIVSWTIMIQ 356
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 113/221 (51%), Gaps = 24/221 (10%)
Query: 155 KIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGV 214
+I D +WN ++ GY G EE + + + + ++ +T +L V+ AC +
Sbjct: 38 QIDGLDTYTWNTIIRGYLEGNDPEEAILVYNHVR--KKGLKVDTYTLVFVIKACGLRPVI 95
Query: 215 KLGKAIHGYVLR----HHIHLSTAC----GFVICSC---SVFNQLSTRDVVVWNSIISAF 263
G+ IHG + + + + TA G C +F+++ RD+V+WN++I+A+
Sbjct: 96 LEGEQIHGQIFKLGFEFEVIIQTALLNLYGLFDEDCGLQQIFDEMPQRDLVMWNALIAAY 155
Query: 264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS----------- 312
++ D++ +NVKPN VT VS+L C L AL +G
Sbjct: 156 AHGNCPYKVREVSYDMVRSNVKPNGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEFDV 215
Query: 313 FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
FV NALI +Y +CG+I+ + ++F LMP +N+VSW +I+ Y
Sbjct: 216 FVHNALIVVYSKCGSIRDAVQVFQLMPMRNVVSWTSLINGY 256
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/393 (19%), Positives = 159/393 (40%), Gaps = 78/393 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF------CN---------------WTSMMGMYNV 42
G Q+H + G E + + LL ++ C W +++ Y
Sbjct: 98 GEQIHGQIFKLGFEFEVIIQTALLNLYGLFDEDCGLQQIFDEMPQRDLVMWNALIAAYAH 157
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
++ + Y M+ V+P+ + CS L+ R GK V+ Y
Sbjct: 158 GNCPYKVREVSYDMVRSNVKPNGVTAVSILSVCSSLRALREGKAVHGY------------ 205
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+T L E D V+N+LI Y+KC ++ + F + +++V
Sbjct: 206 ---------------VTKNLIE---FDVFVHNALIVVYSKCGSIRDAVQVFQLMPMRNVV 247
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW +++ GY+ E +ME +++P+ I++ GV+ C++++ +LG+ I
Sbjct: 248 SWTSLINGYSDNNCPNEALGFFKQME--AENIRPDEITVLGVVCMCSKLRSFELGEWISQ 305
Query: 223 YVLR------------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
YV++ + + CG + +C +F+ + + +V W +I G +
Sbjct: 306 YVVKIGLLKESPAIANALMDMHAKCGNINRACQIFDGMEEKTIVSWTIMIQGLAMHGHGL 365
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNAL 318
AL + KP+++ +S+L AC + +G S + + +
Sbjct: 366 SALVRFCQMQREGFKPDSLVFLSLLSACSHAGLVDEGWRCFSSMEADYHISPWMEHYGCM 425
Query: 319 IDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMI 350
+D+ R G + ++ K MP K +++ W ++
Sbjct: 426 VDILCRAGLVDEAFKFVQNMPIKPDMIVWRTLL 458
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 98/223 (43%), Gaps = 37/223 (16%)
Query: 1 MELGIQVHAHLIV----CGVELCAFLGSQLLEV--FCNWTSMMGMYNVLGYYEEIVNLFY 54
+E + VH LIV CG A QL+ + +WTS++ Y+ E + F
Sbjct: 211 IEFDVFVHNALIVVYSKCGSIRDAVQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGFFK 270
Query: 55 LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG 114
M + +RPD V CS+L+ + +G+ + Y++ I
Sbjct: 271 QMEAENIRPDEITVLGVVCMCSKLRSFELGEWISQYVVKI-------------------- 310
Query: 115 RMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALG 174
GL +E + N+L+D +AKC + + F +++K +VSW M+ G A+
Sbjct: 311 ------GLLKESPA---IANALMDMHAKCGNINRACQIFDGMEEKTIVSWTIMIQGLAMH 361
Query: 175 GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
G ++ L+ +M + +P+++ +L+AC+ V G
Sbjct: 362 G--HGLSALVRFCQMQREGFKPDSLVFLSLLSACSHAGLVDEG 402
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 11/122 (9%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-LKLA 302
+ +Q+ D WN+II ++ +A+ + V +K +T T+V V+ AC L+
Sbjct: 35 IADQIDGLDTYTWNTIIRGYLEGNDPEEAILVYNHVRKKGLKVDTYTLVFVIKACGLRPV 94
Query: 303 ALPQ----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
L G + AL+++YG ++IF MP ++LV WN +I+
Sbjct: 95 ILEGEQIHGQIFKLGFEFEVIIQTALLNLYGLFDEDCGLQQIFDEMPQRDLVMWNALIAA 154
Query: 353 YG 354
Y
Sbjct: 155 YA 156
>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Glycine max]
Length = 563
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 153/329 (46%), Gaps = 61/329 (18%)
Query: 52 LFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111
L+ MI+ G PDHF P V KAC + D GK ++ ++ FE +A LL +++
Sbjct: 91 LYRQMIENGYSPDHFTFPFVLKACCVIADQDCGKCIHSCIVKSGFEADAYTATGLLHMYV 150
Query: 112 KCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGY 171
C M+ SGL KV F I + ++V+W ++AGY
Sbjct: 151 SCADMK--SGL------------------------KV----FDNIPKWNVVAWTCLIAGY 180
Query: 172 ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----- 226
E + ++M +++PN I++ L ACA + + G+ +H + +
Sbjct: 181 VKNNQPYEALKVFEDMS--HWNVEPNEITMVNALIACAHSRDIDTGRWVHQRIRKAGYDP 238
Query: 227 ------HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
+I L+TA CG + + +FN++ R++V WNS+I+A+ + + +AL
Sbjct: 239 FMSTSNSNIILATAILEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQEAL 298
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMY 322
DL D+ + V P+ T +SVL C AL G+ T + AL+DMY
Sbjct: 299 DLFFDMWTSGVYPDKATFLSVLSVCAHQCALALGQTVHAYLLKTGIATDISLATALLDMY 358
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ G + ++KIF + K++V W MI+
Sbjct: 359 AKTGELGNAQKIFSSLQKKDVVMWTSMIN 387
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 117/256 (45%), Gaps = 41/256 (16%)
Query: 134 NSLIDFYAKCRYLKVSHCKF--SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
+ LIDF + +++ +I + WN+M+ G+ + ++ LL +MI+
Sbjct: 40 SKLIDFCVDSEFGDINYADLVLRQIHNPSVYIWNSMIRGF-VNSHNPRMSMLLYR-QMIE 97
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIH-----------GYVLRHHIHLSTACGFVIC 240
P+ + VL AC + GK IH Y +H+ +C +
Sbjct: 98 NGYSPDHFTFPFVLKACCVIADQDCGKCIHSCIVKSGFEADAYTATGLLHMYVSCADMKS 157
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
VF+ + +VV W +I+ +V++ Q +AL + D+ NV+PN +T+V+ L AC
Sbjct: 158 GLKVFDNIPKWNVVAWTCLIAGYVKNNQPYEALKVFEDMSHWNVEPNEITMVNALIAC-- 215
Query: 301 LAALPQGLGTGSFVWN----------------------ALIDMYGRCGAIQKSRKIFVLM 338
A + + TG +V A+++MY +CG ++ +R +F M
Sbjct: 216 --AHSRDIDTGRWVHQRIRKAGYDPFMSTSNSNIILATAILEMYAKCGRLKIARDLFNKM 273
Query: 339 PHKNLVSWNVMISVYG 354
P +N+VSWN MI+ Y
Sbjct: 274 PQRNIVSWNSMINAYN 289
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 74/344 (21%), Positives = 151/344 (43%), Gaps = 50/344 (14%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT ++ Y E + +F M V P+ AC+ +D G+ V+
Sbjct: 173 WTCLIAGYVKNNQPYEALKVFEDMSHWNVEPNEITMVNALIACAHSRDIDTGRWVHQR-- 230
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+++ D F+ + + ++ ++++ YAKC LK++
Sbjct: 231 ---------IRKAGYDPFMSTS------------NSNIILATAILEMYAKCGRLKIARDL 269
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+K+ Q+++VSWN+M+ Y +E +L +M + + P+ + VL+ CA
Sbjct: 270 FNKMPQRNIVSWNSMINAYNQYERHQEALDLF--FDMWTSGVYPDKATFLSVLSVCAHQC 327
Query: 213 GVKLGKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ LG+ +H Y+L+ I L+TA G + + +F+ L +DVV+W S+I+
Sbjct: 328 ALALGQTVHAYLLKTGIATDISLATALLDMYAKTGELGNAQKIFSSLQKKDVVMWTSMIN 387
Query: 262 AFVRSGQVVDALDLLRDVIV-ANVKPNTVTIVSVLPAC------------LKLAALPQGL 308
G +AL + + + +++ P+ +T + VL AC +L G+
Sbjct: 388 GLAMHGHGNEALSMFQTMQEDSSLVPDHITYIGVLFACSHVGLVEEAKKHFRLMTEMYGM 447
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMIS 351
G + ++D+ R G +++ ++ M N+ W +++
Sbjct: 448 VPGREHYGCMVDLLSRAGHFREAERLMETMTVQPNIAIWGALLN 491
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 31/187 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ YN ++E ++LF+ M GV PD V C+ +G+ V+ Y+
Sbjct: 280 SWNSMINAYNQYERHQEALDLFFDMWTSGVYPDKATFLSVLSVCAHQCALALGQTVHAYL 339
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + + LLD++ K G + +
Sbjct: 340 LKTGIATDISLATALLDMYAKTGELGNAQKI----------------------------- 370
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS +++KD+V W +M+ G A+ G E ++ M+ + + P+ I+ GVL AC+ V
Sbjct: 371 -FSSLQKKDVVMWTSMINGLAMHGHGNEALSMFQTMQE-DSSLVPDHITYIGVLFACSHV 428
Query: 212 KGVKLGK 218
V+ K
Sbjct: 429 GLVEEAK 435
>gi|147833266|emb|CAN77478.1| hypothetical protein VITISV_013730 [Vitis vinifera]
Length = 1009
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/323 (26%), Positives = 147/323 (45%), Gaps = 71/323 (21%)
Query: 46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP 105
++E+ + F LM+ +G+ PD ++ P + KACS + R+GK V+ ++I
Sbjct: 164 WDELFSXFRLMVYEGMLPDKYLVPTILKACSAMLLXRIGKMVHGFVIR------------ 211
Query: 106 LLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWN 165
+ ++ D V N+LI FY+ C L S F ++++D+VSW
Sbjct: 212 ------------------KSVESDVFVGNALIHFYSNCGDLGSSRSVFHSMQERDVVSWT 253
Query: 166 AMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL 225
A+++ Y G +E ++ M++ ++P+ IS S +L+ A+ + L
Sbjct: 254 ALISAYMEEGLXDEAKHIFHLMQL--DGVKPDLISWSALLSGFARNGEIDL--------- 302
Query: 226 RHHIHLSTACGFVICSCSVFNQLSTR----DVVVWNSIISAFVRSGQVVDALDLLRDVIV 281
+ ++ R V WN IIS V++G + DALD+ ++
Sbjct: 303 ---------------ALETLEEMPERGLQPTVNSWNGIISGCVQNGYLEDALDMFSRMLW 347
Query: 282 ANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWNALIDMYGRCGAIQK 330
PN +TI S+LPAC L AL G+ +V ++IDMY +CG+
Sbjct: 348 YPEDPNIITIASILPACTGLKALRLGKAIHXIAXKHGIVGNVYVEGSVIDMYSKCGSYDY 407
Query: 331 SRKIFVLMPHKNLVSWNVMISVY 353
+ K+F +KN WN MI+ Y
Sbjct: 408 AEKVFXKAENKNTAMWNEMIAAY 430
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/383 (23%), Positives = 177/383 (46%), Gaps = 73/383 (19%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
GY E+ +++F M+ P+ + AC+ LK R+GK ++ GN V+
Sbjct: 333 GYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKALRLGKAIHXIAXKHGIVGNVYVE 392
Query: 104 RPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---- 158
++D++ KCG + +F + + ++ + N +I Y ++ + +++
Sbjct: 393 GSVIDMYSKCGSYDYAEKVFXKAENKNTAMWNEMIAAYVNEGKVEDALGLLRSMQKDGWK 452
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEM------------------------------- 187
D++++N +L+G+A G + + LL EM
Sbjct: 453 PDVITYNTILSGHARNGLKTQAXELLSEMVQMGLKPNVVSFNVLISGFQQSGLSYEALKV 512
Query: 188 --------------EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH----HI 229
E++ M+PN I+++G L ACA + GK IHGY LR+ +I
Sbjct: 513 FRIMQSPSDGCNPNEVLNLSMRPNPITITGALPACADLNLWCQGKEIHGYTLRNGFEPNI 572
Query: 230 HLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
+S+A C + + VF ++ R+ V WN++++ ++ + Q +AL L +++
Sbjct: 573 FVSSALVDMYAKCHDMDSANKVFFRIDGRNTVSWNALMAGYINNKQPEEALKLFLEMLGE 632
Query: 283 NVKPNTVTIVSVLPACLKLAALPQGLGTGSF------------VWNALIDMYGRCGAIQK 330
++P+++T + + PAC +AA+ G G + + +ALIDMY +CG+I
Sbjct: 633 GLQPSSITFMILFPACGDIAAIRFGRGLHGYAAKCQLDELKNAIXSALIDMYAKCGSILD 692
Query: 331 SRKIFVLMPHKNLVSWNVMISVY 353
++ +F K++ WN MIS +
Sbjct: 693 AKSVFDSEVEKDVPLWNAMISAF 715
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 125/272 (45%), Gaps = 51/272 (18%)
Query: 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL 107
E++NL +RP+ AC++L + GK+++ Y + FE N
Sbjct: 527 EVLNL-------SMRPNPITITGALPACADLNLWCQGKEIHGYTLRNGFEPN-------- 571
Query: 108 DLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAM 167
V+++L+D YAKC + ++ F +I ++ VSWNA+
Sbjct: 572 ----------------------IFVSSALVDMYAKCHDMDSANKVFFRIDGRNTVSWNAL 609
Query: 168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH 227
+AGY EE L +EM+ +QP++I+ + AC + ++ G+ +HGY +
Sbjct: 610 MAGYINNKQPEEALKLF--LEMLGEGLQPSSITFMILFPACGDIAAIRFGRGLHGYAAKC 667
Query: 228 H------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDL 275
I + CG ++ + SVF+ +DV +WN++ISAF G +A +
Sbjct: 668 QLDELKNAIXSALIDMYAKCGSILDAKSVFDSEVEKDVPLWNAMISAFSVHGMARNAFAV 727
Query: 276 LRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
+ + + P+ +T VS+L AC + + +G
Sbjct: 728 FXQMELLGIXPDHITFVSLLSACARDGLVEEG 759
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 105/236 (44%), Gaps = 42/236 (17%)
Query: 132 VNNSLIDFYAKCRY-LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
+ N L+ Y K ++ L+ + +I + + ++ A++ Y +E+ + M+
Sbjct: 118 IGNKLVVLYCKNQWSLEDARKLLDEIPNRTVPAYAALIRSYCRSEQWDELFSXF--RLMV 175
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVI 239
M P+ + +L AC+ + ++GK +HG+V+R IH + CG +
Sbjct: 176 YEGMLPDKYLVPTILKACSAMLLXRIGKMVHGFVIRKSVESDVFVGNALIHFYSNCGDLG 235
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
S SVF+ + RDVV W ++ISA++ G +A + + + VKP+ ++
Sbjct: 236 SSRSVFHSMQERDVVSWTALISAYMEEGLXDEAKHIFHLMQLDGVKPDLIS--------- 286
Query: 300 KLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLV----SWNVMIS 351
W+AL+ + R G I + + MP + L SWN +IS
Sbjct: 287 ---------------WSALLSGFARNGEIDLALETLEEMPERGLQPTVNSWNGIIS 327
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC----- 298
+ +++ R V + ++I ++ RS Q + R ++ + P+ + ++L AC
Sbjct: 139 LLDEIPNRTVPAYAALIRSYCRSEQWDELFSXFRLMVYEGMLPDKYLVPTILKACSAMLL 198
Query: 299 LKLAALPQG------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
++ + G + + FV NALI Y CG + SR +F M +++VSW +IS
Sbjct: 199 XRIGKMVHGFVIRKSVESDVFVGNALIHFYSNCGDLGSSRSVFHSMQERDVVSWTALISA 258
Query: 353 Y 353
Y
Sbjct: 259 Y 259
>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1125
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 169/392 (43%), Gaps = 75/392 (19%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNVLG 44
QVH+H+I G + + + LL+ +C + +++ Y+ G
Sbjct: 219 QVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEG 278
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
+ E +NLF+ M + G RP F + A +L D G+ V+ +++ F N V
Sbjct: 279 FNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVAN 338
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
LLD + K R+ S LF EM + D +S+
Sbjct: 339 ALLDFYSKHDRVVEASKLFYEM------------------------------PEVDGISY 368
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
N ++ YA G +E L E++ D + + +L+ A + +G+ IH
Sbjct: 369 NVLVTCYAWNGRVKESLELFKELQFTGFDRR--NFPFATLLSIAAISLNLDIGRQIHSQT 426
Query: 225 L-----------RHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
+ + + CG + +F+ L+ + V W ++IS++V+ G D L
Sbjct: 427 IVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGL 486
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGS----FVWNALIDMY 322
L ++ A + + T S++ AC LA+L G +G+G F +AL+DMY
Sbjct: 487 KLFVEMQRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMY 546
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+CG+I+ + ++F MP +N VSWN +IS Y
Sbjct: 547 AKCGSIKDALQMFQEMPVRNSVSWNALISAYA 578
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/363 (21%), Positives = 149/363 (41%), Gaps = 62/363 (17%)
Query: 17 ELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACS 76
E S WT ++G Y + E LF M G+ PDH + +
Sbjct: 150 EARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFT 209
Query: 77 ELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSL 136
E + V+ ++I + ++ V LLD
Sbjct: 210 EFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDS--------------------------- 242
Query: 137 IDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP 196
Y K R L ++ F+ I ++D V++NA+L GY+ GF E NL +M+ + +P
Sbjct: 243 ---YCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQ--EVGYRP 297
Query: 197 NTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVF 245
+ + +L A Q+ ++ G+ +HG+V++ + + + V+ + +F
Sbjct: 298 TEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLF 357
Query: 246 NQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP 305
++ D + +N +++ + +G+V ++L+L +++ ++ L +AA+
Sbjct: 358 YEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATL----LSIAAIS 413
Query: 306 QGLGTGS---------------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
L G V N+L+DMY +CG ++ +IF + ++ V W MI
Sbjct: 414 LNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMI 473
Query: 351 SVY 353
S Y
Sbjct: 474 SSY 476
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 85/387 (21%), Positives = 169/387 (43%), Gaps = 53/387 (13%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMID-K 59
+E G QVH ++ C F+ + LL+ + ++ E LFY M +
Sbjct: 315 IEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVV----------EASKLFYEMPEVD 364
Query: 60 GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPL--------LDLFI 111
G+ + V + RV K+ + ++F G P + L +
Sbjct: 365 GISYNVLVTCYAWNG-------RV-KESLELFKELQFTGFDRRNFPFATLLSIAAISLNL 416
Query: 112 KCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGY 171
GR + + + + LV NSL+D YAKC ++ FS + + V W AM++ Y
Sbjct: 417 DIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSY 476
Query: 172 ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH--- 228
G E+ L EM+ + + + + + ++ ACA + + LGK +H +++
Sbjct: 477 VQKGLHEDGLKLFVEMQ--RAKIGADAATYASIVRACASLASLTLGKQLHSHIIGSGYIS 534
Query: 229 --------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280
+ + CG + + +F ++ R+ V WN++ISA+ ++G L L +++
Sbjct: 535 NVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMV 594
Query: 281 VANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAI 328
+ ++P++V+++S+L AC + +GL + + + IDM R G
Sbjct: 595 RSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGRF 654
Query: 329 QKSRKIFVLMP-HKNLVSWNVMISVYG 354
++ K+ MP + + W+ +++ G
Sbjct: 655 DEAEKLMAQMPFEPDEIMWSSVLNSCG 681
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 131/287 (45%), Gaps = 25/287 (8%)
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVS 149
+I F N L+ F++ G + LF+EM ++ N++I Y K L +
Sbjct: 92 IIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSGNLSEA 151
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + Q+ V+W ++ GYA E L +EM + + P+ +SL+ +L+
Sbjct: 152 RTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLF--IEMGRHGIDPDHVSLATLLSGFT 209
Query: 210 QVKGVKLGKAIHGYVLR--HHIHLSTACGFVICSC---------SVFNQLSTRDVVVWNS 258
+ V + +H +V++ + L + + C +FN + RD V +N+
Sbjct: 210 EFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNA 269
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTG------S 312
+++ + + G +A++L + +P T ++L A ++L + G +
Sbjct: 270 LLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCN 329
Query: 313 FVW-----NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
FVW NAL+D Y + + ++ K+F MP + +S+NV+++ Y
Sbjct: 330 FVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYA 376
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 16/120 (13%)
Query: 246 NQLSTRDVV-VWNSII------SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
N L+ D + VW +I + S Q L L+ ++I KP T +V+ L A
Sbjct: 27 NYLNKNDSIKVWTCVICLIFTNAGHFGSKQYELTLSLMNNII----KPCTRNLVTTLTAP 82
Query: 299 -----LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ + + G ++ N L+ + + G + +RK+F MPHKN+ S N MI Y
Sbjct: 83 KPHLHVDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGY 142
>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Glycine max]
Length = 638
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/337 (25%), Positives = 161/337 (47%), Gaps = 42/337 (12%)
Query: 55 LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG 114
++ + V P+ F P V KAC+ + GK V+ ++ + V LL +++ CG
Sbjct: 107 MLSEATVEPNQFTFPSVLKACAVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCG 166
Query: 115 RMEITSGLF---------------EEMDQDF--LVNNSLIDFYAKCRYLKVSHCKFSKIK 157
ME + LF +E ++F ++ N ++D YA+ LK + F ++
Sbjct: 167 SMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMA 226
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
Q+ +VSWN M++GYA GF +E + M M D+ PN ++L VL A +++ ++LG
Sbjct: 227 QRSVVSWNVMISGYAQNGFYKEAIEIFHRM-MQMGDVLPNRVTLVSVLPAISRLGVLELG 285
Query: 218 KAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
K +H Y ++ I + CG + + VF +L +V+ WN++I
Sbjct: 286 KWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMH 345
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA--------- 317
G+ D + L + + P+ VT +++L AC + +G + + N+
Sbjct: 346 GKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEH 405
Query: 318 ---LIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMI 350
++D+ GR G ++++ ++ + MP K + V W ++
Sbjct: 406 YGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALL 442
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 33/189 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W M+ Y G+Y+E + +F+ M+ G V P+ V A S L +GK V+ Y
Sbjct: 232 SWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLY 291
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
K + + L+D++ KCG +E +FE
Sbjct: 292 AEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFE-------------------------- 325
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
++ Q ++++WNA++ G A+ G ++ N L ME + + P+ ++ +L+AC+
Sbjct: 326 ----RLPQNNVITWNAVIGGLAMHGKANDIFNYLSRME--KCGISPSDVTYIAILSACSH 379
Query: 211 VKGVKLGKA 219
V G++
Sbjct: 380 AGLVDEGRS 388
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 90/235 (38%), Gaps = 75/235 (31%)
Query: 195 QPNTISLSGVL-----AACAQVKG--------VKLGKAIHGYVLRHHIHLSTACGF--VI 239
QPNT S L AC ++ VK G+ + + LS F +
Sbjct: 7 QPNTASYYPRLDVPQIKACKSMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIG 66
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRS-GQVVDALDLLRDVIV-ANVKPNTVTIVSVLPA 297
+ SVF+QL R+ WN++I A + + +DAL + ++ A V+PN T SVL A
Sbjct: 67 YALSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKA 126
Query: 298 CLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQK---------------- 330
C +A L + GL FV L+ MY CG+++
Sbjct: 127 CAVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVR 186
Query: 331 -------------------------------SRKIFVLMPHKNLVSWNVMISVYG 354
+R++F M +++VSWNVMIS Y
Sbjct: 187 NLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYA 241
>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 790
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/369 (25%), Positives = 172/369 (46%), Gaps = 44/369 (11%)
Query: 19 CAFLGSQLLE------VFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVY 72
C LG +LL+ + +M+ Y G Y+E + + M+ G+ D F P V
Sbjct: 234 CFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVI 293
Query: 73 KACSELKDYRVGKDVYDYMI-----SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD 127
+AC+ + ++GK V+ Y++ S F+ + L+ L+ KCG+ +FE+M
Sbjct: 294 RACANARLLQLGKQVHAYVLRREDFSFHFDNS------LVTLYYKCGKFNEARAIFEKMP 347
Query: 128 QDFLVN-NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDE 186
LV+ N+L+ Y ++ + F ++K+K+++SW M++G A GF EE L
Sbjct: 348 AKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSC 407
Query: 187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-----------HHIHLSTAC 235
M+ + +P + SG + +CA + G+ H +++ I + C
Sbjct: 408 MK--REGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKC 465
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
G V + VF + D V WN++I+A + G V+A+D+ +++ ++P+ +T ++VL
Sbjct: 466 GVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVL 525
Query: 296 PACLKLAALPQG------------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
AC + QG + G+ + LID+ R G ++ I +P K
Sbjct: 526 TACSHAGLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPT 585
Query: 344 VS-WNVMIS 351
W ++S
Sbjct: 586 AEIWEALLS 594
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 88/401 (21%), Positives = 155/401 (38%), Gaps = 117/401 (29%)
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+N GY +NLF M +G +PD F V + + D D ++F
Sbjct: 125 HNNDGY--SAINLFCKMKHEGFKPDDFTYASVLAGLALVVD--------DEKQCVQFHAA 174
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKC----RYLKVSHCKFSK 155
A +K G +TS V+N+L+ Y++C L + F
Sbjct: 175 A----------LKSGAGYVTS-----------VSNALVSVYSRCASSPSLLHSARKVFDD 213
Query: 156 IKQKDLVSWNAMLAGYALGG---FREEVTNLLDE-------------------------- 186
I +KD SW M+ GY G +E+ +DE
Sbjct: 214 IPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEM 273
Query: 187 -MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----------IHLSTAC 235
M+ + ++ + + V+ ACA + ++LGK +H YVLR + L C
Sbjct: 274 VRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDFSFHFDNSLVTLYYKC 333
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV----------- 284
G + ++F ++ +D+V WN+++S +V SG + +A + +++ N+
Sbjct: 334 GKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLA 393
Query: 285 --------------------KPNTVTIVSVLPACLKLAA-----------LPQGLGTGSF 313
+P + +C L A + G +
Sbjct: 394 ENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLS 453
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
NALI MY +CG +++++++F MP + VSWN +I+ G
Sbjct: 454 AGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALG 494
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 75/338 (22%), Positives = 145/338 (42%), Gaps = 73/338 (21%)
Query: 82 RVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFY 140
++ + V+ +I+ F+ +A + L+D++ K ++ LF+E+ + D + +++ Y
Sbjct: 31 QLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVSGY 90
Query: 141 AKCRYLKVSHCKFSK--IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT 198
+ ++ F + + +D V +NAM+ G++ NL +M+ +P+
Sbjct: 91 CASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMK--HEGFKPDD 148
Query: 199 ISLSGVLAA----------CAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCS----- 243
+ + VLA C Q L K+ GYV +S A V C+
Sbjct: 149 FTYASVLAGLALVVDDEKQCVQFHAAAL-KSGAGYV----TSVSNALVSVYSRCASSPSL 203
Query: 244 ------VFNQLSTRD--------------------------------VVVWNSIISAFVR 265
VF+ + +D +V +N++IS +V
Sbjct: 204 LHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVN 263
Query: 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW---------- 315
G +AL+++R ++ + ++ + T SV+ AC L G ++V
Sbjct: 264 CGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDFSFHFD 323
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
N+L+ +Y +CG ++R IF MP K+LVSWN ++S Y
Sbjct: 324 NSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGY 361
>gi|359489798|ref|XP_002274780.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 804
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 155/344 (45%), Gaps = 54/344 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W++M+ G Y E +F M GV P+H + AC+ + GK+++ + I
Sbjct: 78 WSAMVSACVKSGQYGEAFEIFRAMQYDGVEPNHVSIVSILPACANVGALLFGKEIHGFSI 137
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F PL + V+NSL+D YAKCR K S
Sbjct: 138 KKMF-------HPLTN-----------------------VHNSLVDMYAKCRNFKASMLV 167
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F +I +KDL+SW ++ G E M+ + + + ++ A Q
Sbjct: 168 FDQILEKDLISWTTIIRGCIENDCPREAFKAFSRMQF--SCFGADETIVQDLIVAIIQAD 225
Query: 213 GVKLGKAIHGYVLRH----HIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNSIIS 261
K G A HG++L++ + + TA G + + VF+QL+ +D + W+++IS
Sbjct: 226 EHKFGIAFHGFLLKNGLLAFVSIGTALLQMYAKFGELESAIIVFDQLNKKDYISWSAMIS 285
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQGLGT 310
S +AL+ + + + +PN +T VS+L AC ++ A G +
Sbjct: 286 VHAHSRHPYNALETFKQMQSTDERPNEITFVSLLQACSLIGAQELGESIQAHATKAGYLS 345
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+F+ +ALID+Y + G I + R IF +P K+LV W+ MI+ YG
Sbjct: 346 NAFLSSALIDLYCKFGRINQGRAIFNEIPTKDLVCWSSMINGYG 389
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 99/183 (54%), Gaps = 21/183 (11%)
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTA-CGF-----V 238
M+ T+ +PN +++ V+ A + + + + I G V++ + ++TA GF +
Sbjct: 1 MLMTEQRPNHVTVLSVIRAISGLGLEDMMRVICGSVIKLGFESEVSVATALIGFYSDYDM 60
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+FNQ +D+V+W++++SA V+SGQ +A ++ R + V+PN V+IVS+LPAC
Sbjct: 61 GIVWKIFNQTPIKDLVLWSAMVSACVKSGQYGEAFEIFRAMQYDGVEPNHVSIVSILPAC 120
Query: 299 LKLAALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
+ AL G F V N+L+DMY +C + S +F + K+L+SW
Sbjct: 121 ANVGALLFGKEIHGFSIKKMFHPLTNVHNSLVDMYAKCRNFKASMLVFDQILEKDLISWT 180
Query: 348 VMI 350
+I
Sbjct: 181 TII 183
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 27/220 (12%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
+ +L+ YAK L+ + F ++ +KD +SW+AM++ +A R L +M
Sbjct: 248 IGTALLQMYAKFGELESAIIVFDQLNKKDYISWSAMISVHAHS--RHPYNALETFKQMQS 305
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTA-----CGF--VIC 240
TD +PN I+ +L AC+ + +LG++I + + + LS+A C F +
Sbjct: 306 TDERPNEITFVSLLQACSLIGAQELGESIQAHATKAGYLSNAFLSSALIDLYCKFGRINQ 365
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
++FN++ T+D+V W+S+I+ + +G +AL+ +++ VKPN V +SVL AC
Sbjct: 366 GRAIFNEIPTKDLVCWSSMINGYGLNGCGDEALETFSNMLACGVKPNEVVFISVLSACSH 425
Query: 301 LAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340
+G W+ M + G I K +PH
Sbjct: 426 CGLEHEG-------WSCFSSMEQKYGIIPK-------LPH 451
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 112/254 (44%), Gaps = 33/254 (12%)
Query: 127 DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDE 186
+ + V +LI FY+ + + F++ KDLV W+AM++ G E +
Sbjct: 42 ESEVSVATALIGFYSDYD-MGIVWKIFNQTPIKDLVLWSAMVSACVKSGQYGEAFEIFRA 100
Query: 187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTAC 235
M+ ++PN +S+ +L ACA V + GK IHG+ ++ H + C
Sbjct: 101 MQY--DGVEPNHVSIVSILPACANVGALLFGKEIHGFSIKKMFHPLTNVHNSLVDMYAKC 158
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALD---------------LLRDVI 280
S VF+Q+ +D++ W +II + + +A +++D+I
Sbjct: 159 RNFKASMLVFDQILEKDLISWTTIIRGCIENDCPREAFKAFSRMQFSCFGADETIVQDLI 218
Query: 281 VANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340
VA ++ + L L GL + AL+ MY + G ++ + +F +
Sbjct: 219 VAIIQADEHKFGIAFHGFL----LKNGLLAFVSIGTALLQMYAKFGELESAIIVFDQLNK 274
Query: 341 KNLVSWNVMISVYG 354
K+ +SW+ MISV+
Sbjct: 275 KDYISWSAMISVHA 288
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/230 (20%), Positives = 87/230 (37%), Gaps = 53/230 (23%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
+ GI H L+ G+ +G+ LL+++ +W++M+ ++
Sbjct: 228 KFGIAFHGFLLKNGLLAFVSIGTALLQMYAKFGELESAIIVFDQLNKKDYISWSAMISVH 287
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+ + F M RP+ + +ACS + +G+ + + + NA
Sbjct: 288 AHSRHPYNALETFKQMQSTDERPNEITFVSLLQACSLIGAQELGESIQAHATKAGYLSNA 347
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
+ L+DL+ K GR+ +F E I KD
Sbjct: 348 FLSSALIDLYCKFGRINQGRAIFNE------------------------------IPTKD 377
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
LV W++M+ GY L G +E M+ ++PN + VL+AC+
Sbjct: 378 LVCWSSMINGYGLNGCGDEALETFS--NMLACGVKPNEVVFISVLSACSH 425
>gi|15223763|ref|NP_172899.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806395|sp|Q9M9R6.2|PPR43_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g14470
gi|332191047|gb|AEE29168.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 540
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 152/305 (49%), Gaps = 14/305 (4%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G+ E+ + LF M+ GVRP+ V ACS D + + + +
Sbjct: 231 SWNAMLSGYAQNGFTEDALRLFNDMLRLGVRPNETTWVIVISACSFRADPSLTRSLVKLI 290
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM--DQDFLVNNSLIDFYAKCRYLKVS 149
+ N VK LLD+ KC ++ +F E+ ++ + N++I Y + + +
Sbjct: 291 DEKRVRLNCFVKTALLDMHAKCRDIQSARRIFNELGTQRNLVTWNAMISGYTRIGDMSSA 350
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + ++++VSWN+++AGYA G ++M + D +P+ +++ VL+AC
Sbjct: 351 RQLFDTMPKRNVVSWNSLIAGYAHNGQAALAIEFFEDM-IDYGDSKPDEVTMISVLSACG 409
Query: 210 QVKGVKLGKAIHGYVLRHHIHLSTAC-----------GFVICSCSVFNQLSTRDVVVWNS 258
+ ++LG I Y+ ++ I L+ + G + + VF+++ RDVV +N+
Sbjct: 410 HMADLELGDCIVDYIRKNQIKLNDSGYRSLIFMYARGGNLWEAKRVFDEMKERDVVSYNT 469
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNAL 318
+ +AF +G V+ L+LL + ++P+ VT SVL AC + L +G + N L
Sbjct: 470 LFTAFAANGDGVETLNLLSKMKDEGIEPDRVTYTSVLTACNRAGLLKEGQRIFKSIRNPL 529
Query: 319 IDMYG 323
D Y
Sbjct: 530 ADHYA 534
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 88/408 (21%), Positives = 175/408 (42%), Gaps = 94/408 (23%)
Query: 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS 93
SM ++ + +++ L+ G+ PD F P V K+ R G +
Sbjct: 75 NSMFKYFSKMDMANDVLRLYEQRSRCGIMPDAFSFPVVIKSAG-----RFGILFQALVEK 129
Query: 94 IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ------------------------- 128
+ F + V+ ++D+++K +E +F+++ Q
Sbjct: 130 LGFFKDPYVRNVIMDMYVKHESVESARKVFDQISQRKGSDWNVMISGYWKWGNKEEACKL 189
Query: 129 -DFLVNNSLIDF------YAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVT 181
D + N ++ + +AK + L+ + F ++ +K +VSWNAML+GYA GF E+
Sbjct: 190 FDMMPENDVVSWTVMITGFAKVKDLENARKYFDRMPEKSVVSWNAMLSGYAQNGFTEDAL 249
Query: 182 NLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS--------- 232
L + +M++ ++PN + V++AC+ L +++ + + L+
Sbjct: 250 RLFN--DMLRLGVRPNETTWVIVISACSFRADPSLTRSLVKLIDEKRVRLNCFVKTALLD 307
Query: 233 --TACGFVICSCSVFNQLST--------------------------------RDVVVWNS 258
C + + +FN+L T R+VV WNS
Sbjct: 308 MHAKCRDIQSARRIFNELGTQRNLVTWNAMISGYTRIGDMSSARQLFDTMPKRNVVSWNS 367
Query: 259 IISAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV--- 314
+I+ + +GQ A++ D+I + KP+ VT++SVL AC +A L G ++
Sbjct: 368 LIAGYAHNGQAALAIEFFEDMIDYGDSKPDEVTMISVLSACGHMADLELGDCIVDYIRKN 427
Query: 315 --------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ +LI MY R G + +++++F M +++VS+N + + +
Sbjct: 428 QIKLNDSGYRSLIFMYARGGNLWEAKRVFDEMKERDVVSYNTLFTAFA 475
>gi|413935694|gb|AFW70245.1| hypothetical protein ZEAMMB73_875976 [Zea mays]
Length = 807
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/388 (25%), Positives = 172/388 (44%), Gaps = 68/388 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL--KDYRVGK---- 85
++T+MMG G ++ + LF M G+R D V AC++ DY V +
Sbjct: 210 SFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQL 269
Query: 86 --DVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYA- 141
++ ++ F + V L+DL+ K +M+ +FE + +V+ N LI Y
Sbjct: 270 AQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQ 329
Query: 142 ----------------------------------KCRYLKVSHCKFSKIKQKDLVSWNAM 167
K R + + F KI + + +WN +
Sbjct: 330 LGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIPKPSVTTWNTL 389
Query: 168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH 227
L+GY +E +L M+ ++QP+ +L+ +L++C+++ +LGK +H +R
Sbjct: 390 LSGYGQEELHQETIDLFRRMQ--HQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVRL 447
Query: 228 HIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL 276
+H + + CG V + +FN ++ RDVV WNS+IS +A D L
Sbjct: 448 LLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFL 507
Query: 277 RDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGS----FVWNALIDMYGRC 325
+ + + P + S++ C +L+++PQG L G +V +LIDMY +
Sbjct: 508 KQMRENGMFPTESSYASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKS 567
Query: 326 GAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G + +R F M KNLV+WN MI Y
Sbjct: 568 GNMDDARLFFNCMIVKNLVAWNEMIHGY 595
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/344 (21%), Positives = 148/344 (43%), Gaps = 56/344 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +++ Y ++E ++LF M + V+PD + +CS L ++ +GK V+ +
Sbjct: 386 WNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASV 445
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ D+F+ G LID Y+KC + ++
Sbjct: 446 RLLLHN---------DMFVASG---------------------LIDIYSKCGQVGIALII 475
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+ + ++D+V WN+M++G A+ EE + L +M + M P S + ++ CA++
Sbjct: 476 FNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMR--ENGMFPTESSYASMINLCARLS 533
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ G+ +H VL+ I + G + + FN + +++V WN +I
Sbjct: 534 SIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIVKNLVAWNEMIH 593
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK----------LAALPQGLGTG 311
+ ++G A++L ++ KP++VT ++VL C ++ G
Sbjct: 594 GYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAVTFFNSMESNYGIT 653
Query: 312 SFV--WNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
V + LID R + + MP+K + + W V+++
Sbjct: 654 PLVEHYTCLIDALARAARFAEVEAVIGKMPYKDDPILWEVLLAA 697
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/347 (21%), Positives = 141/347 (40%), Gaps = 58/347 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ G E + ++ M+ +G+ P +F V AC + G+ +
Sbjct: 109 SWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLA 168
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + +G+ V N L+ Y KC + +
Sbjct: 169 VKVGLDGHQ------------------------------FVENGLLGMYTKCGSVADAVR 198
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + + VS+ AM+ G A GG ++ L M +T ++ + +++S VL ACAQ
Sbjct: 199 LFDGMPSPNEVSFTAMMGGLAQGGAVDDALRLFARMS--RTGIRVDPVAVSSVLGACAQA 256
Query: 212 --------KGVKLGKAIHGYVLRHHIHLSTACGFVIC-----------SCSVFNQLSTRD 252
+ ++L ++IH V+R G + + VF LS+
Sbjct: 257 CAGDYNVARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVS 316
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG--- 309
+V WN +I+ + + G A+++L + + +PN VT ++L +C+K +P
Sbjct: 317 IVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIKARDVPSARAMFD 376
Query: 310 ----TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
WN L+ YG+ Q++ +F M H+N+ ++V
Sbjct: 377 KIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAV 423
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 114/246 (46%), Gaps = 34/246 (13%)
Query: 141 AKCRYLKVSHCK--FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT 198
A CR ++ + ++ ++ VSWN ++A A G E + M+Q + P
Sbjct: 85 AACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMY--QGMLQEGLAPTN 142
Query: 199 ISLSGVLAACAQVKGVKLGKAIHGYVLR-----HH------IHLSTACGFVICSCSVFNQ 247
+L+ VL+AC V + G+ HG ++ H + + T CG V + +F+
Sbjct: 143 FTLASVLSACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDG 202
Query: 248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA---- 303
+ + + V + +++ + G V DAL L + ++ + V + SVL AC + A
Sbjct: 203 MPSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYN 262
Query: 304 ---------------LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
+ +G G+ V N+L+D+Y + + ++ K+F + ++VSWN+
Sbjct: 263 VARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNI 322
Query: 349 MISVYG 354
+I+ YG
Sbjct: 323 LITGYG 328
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 74/143 (51%), Gaps = 13/143 (9%)
Query: 221 HGYVLRHHIHLSTAC--GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRD 278
H V ++ +S AC G + + + ++ R+ V WN++I+A RSG +AL++ +
Sbjct: 73 HPNVYSYNAAISAACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQG 132
Query: 279 VIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGA 327
++ + P T+ SVL AC +AAL GL FV N L+ MY +CG+
Sbjct: 133 MLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGS 192
Query: 328 IQKSRKIFVLMPHKNLVSWNVMI 350
+ + ++F MP N VS+ M+
Sbjct: 193 VADAVRLFDGMPSPNEVSFTAMM 215
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 27/217 (12%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGV 61
ELG QVH+ + + F+ S L+++ Y+ G + +F +M ++ V
Sbjct: 435 ELGKQVHSASVRLLLHNDMFVASGLIDI----------YSKCGQVGIALIIFNMMTERDV 484
Query: 62 RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRME-ITS 120
VC S L + + ++ +D++ ++ G + + C R+ I
Sbjct: 485 -----VCWN--SMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMINLCARLSSIPQ 537
Query: 121 G-------LFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYAL 173
G L + DQ+ V SLID YAK + + F+ + K+LV+WN M+ GYA
Sbjct: 538 GRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIVKNLVAWNEMIHGYAQ 597
Query: 174 GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
GF E+ L + M+ T +P++++ VL C+
Sbjct: 598 NGFGEKAVELFE--YMLTTKQKPDSVTFIAVLTGCSH 632
>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 734
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 107/391 (27%), Positives = 170/391 (43%), Gaps = 75/391 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G Q H+ + G ++GS LL ++C +W +M+ Y
Sbjct: 137 GKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGYAS 196
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
++ V +F LM + + F V A + DV+ Y
Sbjct: 197 SDIADKAVEVFELMRREEEIQNEFALTSVLSALT--------SDVFVY-----------T 237
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
R + L IK G + I S V N+L+ YAKC L + F K+ +
Sbjct: 238 GRQVHSLAIKNGLLAIVS-----------VANALVTMYAKCGSLDDAVRTFEFSGDKNSI 286
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+W+AM+ GYA GG ++ L ++M + + P+ +L GV+ AC+ + V GK +H
Sbjct: 287 TWSAMVTGYAQGGDSDKALKLFNKMH--SSGVLPSEFTLVGVINACSDLCAVVEGKQMHS 344
Query: 223 -----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
YVL + + CG + + F + DVV+W SII+ +V++G
Sbjct: 345 FAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFECVQQPDVVLWTSIITGYVQNGDYEG 404
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------VWNALID 320
L+L + + V PN +T+ SVL AC LAAL QG + + +AL
Sbjct: 405 GLNLYGKMQMERVIPNELTMASVLRACSSLAALDQGKQMHARIIKYGFKLEVPIGSALSA 464
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
MY +CG++ IF MP ++++SWN MIS
Sbjct: 465 MYTKCGSLDDGYLIFWRMPSRDVISWNAMIS 495
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 134/286 (46%), Gaps = 43/286 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W++M+ Y G ++ + LF M GV P F V ACS+L GK ++ +
Sbjct: 288 WSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVEGKQMHSFAF 347
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ F GL V ++++D YAKC L +
Sbjct: 348 KLGF------------------------GL------QLYVLSAVVDMYAKCGSLADARKG 377
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++Q D+V W +++ GY G E NL +M+M + + PN ++++ VL AC+ +
Sbjct: 378 FECVQQPDVVLWTSIITGYVQNGDYEGGLNLYGKMQMER--VIPNELTMASVLRACSSLA 435
Query: 213 GVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ GK +H ++++ L T CG + +F ++ +RDV+ WN++IS
Sbjct: 436 ALDQGKQMHARIIKYGFKLEVPIGSALSAMYTKCGSLDDGYLIFWRMPSRDVISWNAMIS 495
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
++G AL+L +++ +KP+ VT V++L AC + + +G
Sbjct: 496 GLSQNGHGNKALELFEKMLLEGIKPDPVTFVNLLSACSHMGLVDRG 541
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/330 (23%), Positives = 138/330 (41%), Gaps = 61/330 (18%)
Query: 50 VNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLD 108
++LF M+ V P+ V+ A S L D GK + + G+ V LL+
Sbjct: 102 ISLFRRMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLN 161
Query: 109 LFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAML 168
++ K G F R L F ++ +++ VSW M+
Sbjct: 162 MYCKTG------------------------FVFDARKL------FDRMPERNTVSWATMI 191
Query: 169 AGYALGGFRE---EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL 225
+GYA + EV L+ E IQ N +L+ VL+A V G+ +H +
Sbjct: 192 SGYASSDIADKAVEVFELMRREEEIQ-----NEFALTSVLSALTSDVFVYTGRQVHSLAI 246
Query: 226 RHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALD 274
++ + + CG + + F ++ + W+++++ + + G AL
Sbjct: 247 KNGLLAIVSVANALVTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALK 306
Query: 275 LLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------VWNALIDMYG 323
L + + V P+ T+V V+ AC L A+ +G SF V +A++DMY
Sbjct: 307 LFNKMHSSGVLPSEFTLVGVINACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYA 366
Query: 324 RCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+CG++ +RK F + ++V W +I+ Y
Sbjct: 367 KCGSLADARKGFECVQQPDVVLWTSIITGY 396
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 28/187 (14%)
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSV 244
P L L C K + G+ +H YV ++L + + ++
Sbjct: 9 PQHRQLLQDLIECTHNKNILKGRTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHALTL 68
Query: 245 FNQLST--RDVVVWNSIISAFVRSGQVVD---ALDLLRDVIVAN-VKPNTVTIVSVLPAC 298
F+ ++ +D V WNS+I+AF ++ A+ L R ++ AN V PN T+ V A
Sbjct: 69 FDSINDNDKDDVSWNSLINAFSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAA 128
Query: 299 LKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
L+ A+ G +V ++L++MY + G + +RK+F MP +N VSW
Sbjct: 129 SNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWA 188
Query: 348 VMISVYG 354
MIS Y
Sbjct: 189 TMISGYA 195
>gi|357128207|ref|XP_003565766.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33680-like [Brachypodium distachyon]
Length = 734
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 122/244 (50%), Gaps = 24/244 (9%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V NSL+ YAK + + F K+++ ++W+AM+ GY+ G E + +M
Sbjct: 257 VENSLVTMYAKAGCMDAAFHVFESSKERNSITWSAMITGYSQNGNAESAVRMFSQMH--A 314
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVIC 240
P +L GVL AC+ V + GK HG YV + + CG +
Sbjct: 315 AGFPPTEFTLVGVLNACSDVGTLMEGKQAHGLMVKLGFEVQVYVKSALVDMYAKCGCIGD 374
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ FNQ S D+V+W ++++ V++G+ AL L + V PNT+TI S+L AC
Sbjct: 375 AKECFNQFSELDIVLWTAMVTGHVQNGEFEQALMLYARMDKEGVFPNTLTITSLLRACAG 434
Query: 301 LAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
LAAL G G G+ V +AL MY +CG ++ +F MPH+++++WN +
Sbjct: 435 LAALEPGKQLHTQILKFGFGLGASVGSALSTMYSKCGNLEDGMVVFRRMPHRDVIAWNSI 494
Query: 350 ISVY 353
IS +
Sbjct: 495 ISGF 498
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 133/287 (46%), Gaps = 43/287 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W++M+ Y+ G E V +F M G P F V ACS++ GK + M
Sbjct: 288 TWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNACSDVGTLMEGKQAHGLM 347
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + FE VK ++L+D YAKC + +
Sbjct: 348 VKLGFEVQVYVK------------------------------SALVDMYAKCGCIGDAKE 377
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F++ + D+V W AM+ G+ G E+ L M+ + + PNT++++ +L ACA +
Sbjct: 378 CFNQFSELDIVLWTAMVTGHVQNGEFEQALMLYARMD--KEGVFPNTLTITSLLRACAGL 435
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICS----CS-------VFNQLSTRDVVVWNSII 260
++ GK +H +L+ L + G + + C VF ++ RDV+ WNSII
Sbjct: 436 AALEPGKQLHTQILKFGFGLGASVGSALSTMYSKCGNLEDGMVVFRRMPHRDVIAWNSII 495
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
S F ++G+ DA++L ++ + P+ VT ++VL AC + + +G
Sbjct: 496 SGFSQNGRGNDAINLFEEMKLEGTAPDPVTFINVLCACSHMGLVDRG 542
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 114/246 (46%), Gaps = 23/246 (9%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
+ V+ +L++ Y K + + F ++ ++ VSW AM+AGYA +E L +M
Sbjct: 151 SNVFVSTALLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAARKCSQEAFELFRQM 210
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACG 236
+ + + N + VL+A + G+ +G +HG V++ + + G
Sbjct: 211 -LGECPLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDGMVGFVSVENSLVTMYAKAG 269
Query: 237 FVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296
+ + VF R+ + W+++I+ + ++G A+ + + A P T+V VL
Sbjct: 270 CMDAAFHVFESSKERNSITWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLN 329
Query: 297 ACLKLAALPQG---------LG--TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
AC + L +G LG +V +AL+DMY +CG I +++ F ++V
Sbjct: 330 ACSDVGTLMEGKQAHGLMVKLGFEVQVYVKSALVDMYAKCGCIGDAKECFNQFSELDIVL 389
Query: 346 WNVMIS 351
W M++
Sbjct: 390 WTAMVT 395
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 109/257 (42%), Gaps = 44/257 (17%)
Query: 132 VNNSLIDFYAKCR--YLKVSHCKFSKIKQ--KDLVSWNAMLAGY-------ALGGFREEV 180
V+NSLI FY+ +L + F+ I +D+ SWN++L AL FR +
Sbjct: 49 VSNSLITFYSSFPRLFLPAAFAVFADIPAAARDVASWNSLLNPLSHHRPLAALSHFRSML 108
Query: 181 TNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-----HHIHLSTAC 235
++ + + P+ S + A A+ G +H + ++ +STA
Sbjct: 109 SS---------STILPSPHSFAAAFTAAARAHSASAGAVVHALACKLPSASSNVFVSTAL 159
Query: 236 -------GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA-NVKPN 287
G + + VF+++ R+ V W ++++ + +A +L R ++ + N
Sbjct: 160 LNMYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAARKCSQEAFELFRQMLGECPLHKN 219
Query: 288 TVTIVSVLPACLKLAALPQGL---------GTGSFV--WNALIDMYGRCGAIQKSRKIFV 336
+VL A LP G+ G FV N+L+ MY + G + + +F
Sbjct: 220 EFVATAVLSAISVPLGLPMGVQVHGLVVKDGMVGFVSVENSLVTMYAKAGCMDAAFHVFE 279
Query: 337 LMPHKNLVSWNVMISVY 353
+N ++W+ MI+ Y
Sbjct: 280 SSKERNSITWSAMITGY 296
>gi|297843162|ref|XP_002889462.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335304|gb|EFH65721.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 608
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 164/348 (47%), Gaps = 62/348 (17%)
Query: 28 EVFCNWTSMMGMYNVLGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKD 86
+V C WT+++ ++ YEE + LFY M KG+ PD V AC L+ + GK+
Sbjct: 227 DVIC-WTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKE 285
Query: 87 VYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL 146
++ +I T+G+ + +V +SL+D Y K +
Sbjct: 286 IHGKLI--------------------------TNGI----GSNVVVESSLLDMYGKSGSV 315
Query: 147 KVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
+ + F+ + +K++VSW+A+L GY G E+ + EME + + VL
Sbjct: 316 REARQVFNGMPRKNIVSWSALLGGYCQNGEHEKAIEMFREME------EKDLYCFGTVLK 369
Query: 207 ACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVV 255
ACA + V+LGK IHG +R I L G + + V++++S R+++
Sbjct: 370 ACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDYASRVYSKMSVRNMIT 429
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC------------LKLAA 303
WN+++SA ++G+ +A+ D++ +KP+ ++ ++VL AC L A
Sbjct: 430 WNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISFIAVLTACGHTGLVEEGRNYFALMA 489
Query: 304 LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMI 350
G+ G+ ++ +ID+ GR G +++ + +N S W V++
Sbjct: 490 KSYGIKPGTEHYSCMIDLLGRAGLFEEAENLLDRAECRNDASLWGVLL 537
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/393 (23%), Positives = 175/393 (44%), Gaps = 79/393 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF----------------------CNWTSMMGMYN 41
G+Q HAH++ G+E +G+ LL ++ +WTSMM Y
Sbjct: 79 GLQFHAHVVKSGLETDRNVGNSLLSLYFKLGPDMRETRRVFDGMFVKDAISWTSMMSGYV 138
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+ + + +F M+ G++P+ F KAC EL + R+G+ + +I+ FE N
Sbjct: 139 ASKEHVKALEVFVEMVSFGLQPNKFTLSSAVKACFELGEVRLGRCFHGVVITHGFEWNHV 198
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ L ++ VN +D + F ++ + D+
Sbjct: 199 ISSTLAYMYG--------------------VNKEPVD----------ARRVFDEMPEPDV 228
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
+ W A+L+ ++ EE L M + + P+ + VL AC ++ +K GK IH
Sbjct: 229 ICWTAVLSAFSKNDLYEEALGLFYAMHRGK-GLVPDGSTFGTVLTACGNLRRLKQGKEIH 287
Query: 222 GYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
G ++ + I + G V + VFN + +++V W++++ + ++G+
Sbjct: 288 GKLITNGIGSNVVVESSLLDMYGKSGSVREARQVFNGMPRKNIVSWSALLGGYCQNGEHE 347
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGSF----VWNALI 319
A+++ R++ + + +VL AC LAA+ G + G F V +ALI
Sbjct: 348 KAIEMFREM----EEKDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALI 403
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
D+YG+ G I + +++ M +N+++WN M+S
Sbjct: 404 DLYGKSGCIDYASRVYSKMSVRNMITWNAMLSA 436
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 138/260 (53%), Gaps = 30/260 (11%)
Query: 118 ITSGLFEEMDQDFLVNNSLIDFYAKCRY-LKVSHCKFSKIKQKDLVSWNAMLAGYALGGF 176
+ SGL E D++ V NSL+ Y K ++ + F + KD +SW +M++GY
Sbjct: 87 VKSGL--ETDRN--VGNSLLSLYFKLGPDMRETRRVFDGMFVKDAISWTSMMSGYVAS-- 140
Query: 177 REEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH----LS 232
+E V L +EM+ +QPN +LS + AC ++ V+LG+ HG V+ H +S
Sbjct: 141 KEHVKALEVFVEMVSFGLQPNKFTLSSAVKACFELGEVRLGRCFHGVVITHGFEWNHVIS 200
Query: 233 TACGFV-------ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN-V 284
+ ++ + + VF+++ DV+ W +++SAF ++ +AL L + +
Sbjct: 201 STLAYMYGVNKEPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGL 260
Query: 285 KPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRK 333
P+ T +VL AC L L QG +G+ V ++L+DMYG+ G+++++R+
Sbjct: 261 VPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKSGSVREARQ 320
Query: 334 IFVLMPHKNLVSWNVMISVY 353
+F MP KN+VSW+ ++ Y
Sbjct: 321 VFNGMPRKNIVSWSALLGGY 340
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 12/99 (12%)
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLGTGSFVW 315
GQ+ DA+ +L + + + S+L C K+ + + GL T V
Sbjct: 39 GQLTDAIRILNSTHSSEISAKSNLYASLLQTCRKVFSFIHGLQFHAHVVKSGLETDRNVG 98
Query: 316 NALIDMYGRCGA-IQKSRKIFVLMPHKNLVSWNVMISVY 353
N+L+ +Y + G ++++R++F M K+ +SW M+S Y
Sbjct: 99 NSLLSLYFKLGPDMRETRRVFDGMFVKDAISWTSMMSGY 137
>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
Length = 669
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/341 (25%), Positives = 157/341 (46%), Gaps = 54/341 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ G++++++ + M +G+ P+ + AC + + G+ VY+
Sbjct: 189 SWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYN-- 246
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ G+ I + D + N+LI Y KC L +
Sbjct: 247 --------------------QVGKFGI--------EADVDIRNALISMYTKCGCLSDALE 278
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + + SWN ++ G+ +E + +EM + + P+ I+L VL+ACAQ+
Sbjct: 279 AFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEM--LLHGVTPDGITLVSVLSACAQL 336
Query: 212 KGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ G +H Y+ + I ++ CG + + VF ++ +DVV W ++
Sbjct: 337 GELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMV 396
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
+V+ Q A +L ++ +A V + + +VS+L AC +L AL +G S++
Sbjct: 397 CGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVA 456
Query: 315 -----WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+AL+DMY +CG I + +IF M HK +SWN MI
Sbjct: 457 KDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMI 497
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 131/247 (53%), Gaps = 24/247 (9%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D V + L+++Y R +K + F ++ ++D+VSW +M++ A G ++V +L EM+
Sbjct: 155 DVFVMSGLVNYYGAFRSVKEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQ 214
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGF 237
+ PN +++ +L+AC Q + V G+ ++ V + I + T CG
Sbjct: 215 --AEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGC 272
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ + F + R WN++I FV++ + +AL + ++++ V P+ +T+VSVL A
Sbjct: 273 LSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSA 332
Query: 298 CLKLAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
C +L L +G+ S++ N+LI+MY +CG + + ++F M K++VSW
Sbjct: 333 CAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSW 392
Query: 347 NVMISVY 353
VM+ Y
Sbjct: 393 TVMVCGY 399
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/345 (22%), Positives = 155/345 (44%), Gaps = 56/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ + ++E + +F M+ GV PD V AC++L + R G V+ Y
Sbjct: 290 SWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSY- 348
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
IK G C D ++ NSLI+ YAKC + +
Sbjct: 349 --IKDNGICC---------------------------DNILTNSLINMYAKCGDMAAAER 379
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +KD+VSW M+ GY G NL +EM++ ++ + ++L +L+AC+Q+
Sbjct: 380 VFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKI--AEVVAHEMALVSLLSACSQL 437
Query: 212 KGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ G+ IH Y+ ++ + CG + + +F ++ + + WN++I
Sbjct: 438 GALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMI 497
Query: 261 SAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVLPACLKLAALPQGLG---------- 309
+G +A++L ++ + + KP+ +T+ +VL AC + + +GL
Sbjct: 498 GGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGMVDEGLRYFYLMSSLGV 557
Query: 310 -TGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ + ++D+ GR G + ++ MP N V W +++
Sbjct: 558 VPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPVIWGSLLAA 602
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 127/292 (43%), Gaps = 39/292 (13%)
Query: 96 FEGNACVKRP----LLDLFIKCGRMEITSGLFEEMDQDFLVNNS--------LIDFYAKC 143
F GNA RP LL C + L + + L ++S L+ A
Sbjct: 6 FHGNASQARPIRHHLLAYLDACASRAHLAELHGRLVRAHLTSDSFVAGRLIALLASPAAR 65
Query: 144 RYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSG 203
++ + F + Q + WN M+ GY+ + + EM + + P+ +++
Sbjct: 66 HDMRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMR--RRGVSPDNYTMAA 123
Query: 204 VLAACAQVKGVKL---GKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLS 249
V++A A G+K G AIH +V+ ++ A V + VF ++
Sbjct: 124 VVSASAAFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVKEASKVFEEMY 183
Query: 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL- 308
RDVV W S+ISA + G L +L ++ + PN VTI+S+L AC + A+ +G
Sbjct: 184 ERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRW 243
Query: 309 ---GTGSF-------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
G F + NALI MY +CG + + + F MP + SWN +I
Sbjct: 244 VYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLI 295
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 113/267 (42%), Gaps = 54/267 (20%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT M+ Y + NLF M V + ACS+L G++++ Y+
Sbjct: 391 SWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYI 450
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + C++ L+D++ KCG ++ S +F
Sbjct: 451 EEMNVAKDLCLESALVDMYAKCGCIDTASEIFR--------------------------- 483
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
K++ K +SWNAM+ G A G+ +E L D+M +Q D +P+ I+L VL ACA V
Sbjct: 484 ---KMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQ-DPKPDGITLKAVLGACAHV 539
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V G LR + +L ++ G V D + I+ R+G + +
Sbjct: 540 GMVDEG-------LR-YFYLMSSLGVV------------PDTEHYGCIVDLLGRAGMLDE 579
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPAC 298
A ++ + ++PN V S+L AC
Sbjct: 580 AFHFIKKM---PIEPNPVIWGSLLAAC 603
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 14/123 (11%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
VF+ ++ + VWN +I + DAL + R++ V P+ T+ +V+ A A
Sbjct: 74 VFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAG 133
Query: 304 LPQ--------------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L G + FV + L++ YG +++++ K+F M +++VSW M
Sbjct: 134 LKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVKEASKVFEEMYERDVVSWTSM 193
Query: 350 ISV 352
IS
Sbjct: 194 ISA 196
>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Brachypodium distachyon]
Length = 554
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/390 (22%), Positives = 182/390 (46%), Gaps = 59/390 (15%)
Query: 5 IQVHAHLIVCGVELCAFLGSQLLEVFCN----------------------WTSMMGMYNV 42
++VHAH + + ++L +Q++ CN +M+ Y
Sbjct: 30 LRVHAHAVRLSLSQSSYLATQIVH-LCNAHGRVAHATRVFSQVREPNLHLHNAMIKAYAQ 88
Query: 43 LGYYEEIVNLFYLMIDKGVRP-------DHFVCPKVYKACSELKDYRVGKDVYDYMISIK 95
+ + + ++ M+ + P D F P + KAC L +GK V+ +++
Sbjct: 89 NHRHLDAITVYIRMLRRRPFPWISCTGGDRFTYPFLLKACGGLMALDLGKQVHGHVVRSG 148
Query: 96 FEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFS 154
E NA V+ L++++ + G + + +F+ M ++D + N++I +A+ ++ + F+
Sbjct: 149 CESNAIVQNSLIEMYTRAGDLVLARKVFDGMQERDVVSWNTVISAHARLGQMRKARAVFN 208
Query: 155 KIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNTISLSGVLAACAQVKG 213
+ K +VSW A+++GY G + + ++ ++Q + +P+ +S+ VL ACAQ+
Sbjct: 209 SMPDKTVVSWTALVSGYTAAG---DFSGAVEAFRLMQMEGFEPDDVSIVAVLPACAQLGA 265
Query: 214 VKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISA 262
++LG+ I+ Y RH + + CG + + +FN ++ +DV+ W++++
Sbjct: 266 LELGRWIYAYCNRHQMLRETYVCNALVEMYAKCGCIDQALQLFNGMAEKDVISWSTMVGG 325
Query: 263 FVRSGQVVDALDLLRDV-IVANVKPNTVTIVSVLPACLKLAALPQGLG------------ 309
G+ +A+ L ++ VKPN +T V +L AC L +GL
Sbjct: 326 LAAHGRAQEAVQLFTEMERQGTVKPNGITFVGLLSACSHAGLLDEGLDYFDRMNDVYGIE 385
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
G + ++D+ R G IQ++ + MP
Sbjct: 386 PGVEHYGCIVDLLCRSGQIQRTLDLISDMP 415
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 125/267 (46%), Gaps = 66/267 (24%)
Query: 147 KVSHCK--FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSG- 203
+V+H FS++++ +L NAM+ YA + + + M++ P IS +G
Sbjct: 60 RVAHATRVFSQVREPNLHLHNAMIKAYAQNHRHLDAITVY--IRMLRRRPFP-WISCTGG 116
Query: 204 -------VLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVF 245
+L AC + + LGK +HG+V+R I + T G ++ + VF
Sbjct: 117 DRFTYPFLLKACGGLMALDLGKQVHGHVVRSGCESNAIVQNSLIEMYTRAGDLVLARKVF 176
Query: 246 NQLSTRDVVVWNSIISAFVRSGQV-------------------------------VDALD 274
+ + RDVV WN++ISA R GQ+ A++
Sbjct: 177 DGMQERDVVSWNTVISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVE 236
Query: 275 LLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYG 323
R + + +P+ V+IV+VLPAC +L AL G + ++V NAL++MY
Sbjct: 237 AFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNRHQMLRETYVCNALVEMYA 296
Query: 324 RCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+CG I ++ ++F M K+++SW+ M+
Sbjct: 297 KCGCIDQALQLFNGMAEKDVISWSTMV 323
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 113/268 (42%), Gaps = 55/268 (20%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+++ Y G + V F LM +G PD V AC++L +G+ +Y Y
Sbjct: 217 SWTALVSGYTAAGDFSGAVEAFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAY- 275
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
C R +M ++ V N+L++ YAKC + +
Sbjct: 276 ---------------------CNR--------HQMLRETYVCNALVEMYAKCGCIDQALQ 306
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ + +KD++SW+ M+ G A G +E L EME Q ++PN I+ G+L+AC+
Sbjct: 307 LFNGMAEKDVISWSTMVGGLAAHGRAQEAVQLFTEMER-QGTVKPNGITFVGLLSACSHA 365
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+ G L + ++ G V + I+ RSGQ+
Sbjct: 366 GLLDEG-------LDYFDRMNDVYGI------------EPGVEHYGCIVDLLCRSGQIQR 406
Query: 272 ALDLLRDVIVANVKPNTVTI-VSVLPAC 298
LDL+ D+ + P I SVL AC
Sbjct: 407 TLDLISDMPL----PADAKIWGSVLNAC 430
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 26/176 (14%)
Query: 205 LAACAQVK--------GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVW 256
L ACA + V+L + Y+ +HL A G V + VF+Q+ ++ +
Sbjct: 20 LRACASFRDLLRVHAHAVRLSLSQSSYLATQIVHLCNAHGRVAHATRVFSQVREPNLHLH 79
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKP-------NTVTIVSVLPACLKLAALP---- 305
N++I A+ ++ + +DA+ + ++ P + T +L AC L AL
Sbjct: 80 NAMIKAYAQNHRHLDAITVYIRMLRRRPFPWISCTGGDRFTYPFLLKACGGLMALDLGKQ 139
Query: 306 -------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G + + V N+LI+MY R G + +RK+F M +++VSWN +IS +
Sbjct: 140 VHGHVVRSGCESNAIVQNSLIEMYTRAGDLVLARKVFDGMQERDVVSWNTVISAHA 195
>gi|356546093|ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33680-like [Glycine max]
Length = 775
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 108/393 (27%), Positives = 169/393 (43%), Gaps = 77/393 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G Q HA + F S LL ++C +W +M+ Y
Sbjct: 135 GRQAHALAVKTACSHDVFAASSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMISGYAS 194
Query: 43 LGYYEEIVNLFYLMI--DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+E LF LM +KG + FV V A + G+ V+
Sbjct: 195 QELADEAFELFKLMRHEEKGKNENEFVFTSVLSALTCYMLVNTGRQVHS----------- 243
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
L +K G + I S V N+L+ Y KC L+ + F K+
Sbjct: 244 --------LAMKNGLVCIVS-----------VANALVTMYVKCGSLEDALKTFELSGNKN 284
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
++W+AM+ G+A G ++ L +M Q+ P+ +L GV+ AC+ + G+ +
Sbjct: 285 SITWSAMVTGFAQFGDSDKALKLFYDMH--QSGELPSEFTLVGVINACSDACAIVEGRQM 342
Query: 221 HGY-----------VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
HGY VL + + CG ++ + F + DVV+W SII+ +V++G
Sbjct: 343 HGYSLKLGYELQLYVLSALVDMYAKCGSIVDARKGFECIQQPDVVLWTSIITGYVQNGDY 402
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG--LGTGSFVWN---------AL 318
AL+L + + V PN +T+ SVL AC LAAL QG + G +N AL
Sbjct: 403 EGALNLYGKMQLGGVIPNDLTMASVLKACSNLAALDQGKQMHAGIIKYNFSLEIPIGSAL 462
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
MY +CG++ +IF MP ++++SWN MIS
Sbjct: 463 SAMYAKCGSLDDGYRIFWRMPARDVISWNAMIS 495
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 133/286 (46%), Gaps = 43/286 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W++M+ + G ++ + LFY M G P F V ACS+ G+ ++ Y +
Sbjct: 288 WSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINACSDACAIVEGRQMHGYSL 347
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ +E L L+ V ++L+D YAKC + +
Sbjct: 348 KLGYE---------LQLY---------------------VLSALVDMYAKCGSIVDARKG 377
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I+Q D+V W +++ GY G E NL +M++ + PN ++++ VL AC+ +
Sbjct: 378 FECIQQPDVVLWTSIITGYVQNGDYEGALNLYGKMQL--GGVIPNDLTMASVLKACSNLA 435
Query: 213 GVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ GK +H +++++ L CG + +F ++ RDV+ WN++IS
Sbjct: 436 ALDQGKQMHAGIIKYNFSLEIPIGSALSAMYAKCGSLDDGYRIFWRMPARDVISWNAMIS 495
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
++G+ + L+L + + KP+ VT V++L AC + + +G
Sbjct: 496 GLSQNGRGNEGLELFEKMCLEGTKPDNVTFVNLLSACSHMGLVDRG 541
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/350 (21%), Positives = 139/350 (39%), Gaps = 57/350 (16%)
Query: 26 LLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGK 85
L+ F + +V+ + ++V M K + P+ V+ A S L D R G+
Sbjct: 82 LINAFSQQQAHAPSLHVMHLFRQLV-----MAHKTIVPNAHTLTGVFTAASTLSDSRAGR 136
Query: 86 DVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRY 145
+ + + LL+++ K G + LF+EM
Sbjct: 137 QAHALAVKTACSHDVFAASSLLNMYCKTGLVFEARDLFDEM------------------- 177
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
+++ VSW M++GYA +E L M + N + VL
Sbjct: 178 -----------PERNAVSWATMISGYASQELADEAFELFKLMRHEEKGKNENEFVFTSVL 226
Query: 206 AACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVV 254
+A V G+ +H +++ + + CG + + F ++ +
Sbjct: 227 SALTCYMLVNTGRQVHSLAMKNGLVCIVSVANALVTMYVKCGSLEDALKTFELSGNKNSI 286
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------- 307
W+++++ F + G AL L D+ + P+ T+V V+ AC A+ +G
Sbjct: 287 TWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINACSDACAIVEGRQMHGYS 346
Query: 308 LGTGS----FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L G +V +AL+DMY +CG+I +RK F + ++V W +I+ Y
Sbjct: 347 LKLGYELQLYVLSALVDMYAKCGSIVDARKGFECIQQPDVVLWTSIITGY 396
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 116/250 (46%), Gaps = 27/250 (10%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFRE---EVTNLLDEME 188
+ NSLI+ YAKC + ++ F I KD+VSWN ++ ++ V +L ++
Sbjct: 47 IANSLINLYAKCSHFSKANLVFDSINNKDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLV 106
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTA-------CGF 237
M + PN +L+GV A + + + G+ H ++ H + +++ G
Sbjct: 107 MAHKTIVPNAHTLTGVFTAASTLSDSRAGRQAHALAVKTACSHDVFAASSLLNMYCKTGL 166
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI--VANVKPNTVTIVSVL 295
V + +F+++ R+ V W ++IS + +A +L + + N SVL
Sbjct: 167 VFEARDLFDEMPERNAVSWATMISGYASQELADEAFELFKLMRHEEKGKNENEFVFTSVL 226
Query: 296 PA--CLKLA---------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLV 344
A C L A+ GL V NAL+ MY +CG+++ + K F L +KN +
Sbjct: 227 SALTCYMLVNTGRQVHSLAMKNGLVCIVSVANALVTMYVKCGSLEDALKTFELSGNKNSI 286
Query: 345 SWNVMISVYG 354
+W+ M++ +
Sbjct: 287 TWSAMVTGFA 296
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 11/76 (14%)
Query: 289 VTIVSVLPACLKLAALPQG-------LGTGSF----VWNALIDMYGRCGAIQKSRKIFVL 337
+ ++ L C + L +G L TGSF + N+LI++Y +C K+ +F
Sbjct: 11 LQVLRALVHCTRHKQLRKGRALHARILVTGSFSSTQIANSLINLYAKCSHFSKANLVFDS 70
Query: 338 MPHKNLVSWNVMISVY 353
+ +K++VSWN +I+ +
Sbjct: 71 INNKDVVSWNCLINAF 86
>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
Length = 805
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/372 (25%), Positives = 176/372 (47%), Gaps = 80/372 (21%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDV--YDY 90
W M+ Y +G ++E + LF +M++KG+ K ++ EL D +DV ++
Sbjct: 168 WNFMVSEYAKIGDFKESICLFKIMVEKGIEG------KRPESAFELFDKLCDRDVISWNS 221
Query: 91 MISIKFEGNACVKRPL------------------LDLFIKC--------GRMEITSGLFE 124
MIS + N +R L + + + C G+ + +
Sbjct: 222 MIS-GYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS 280
Query: 125 EMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLL 184
++ +N+L+D Y+KC L + F K+ ++++VSW +M+AGY G + LL
Sbjct: 281 SFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLL 340
Query: 185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LST 233
+ME + ++ + ++++ +L ACA+ + GK +H Y+ +++ +
Sbjct: 341 QQME--KEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYA 398
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
CG + + SVF+ + +D++ WN++I +KP++ T+
Sbjct: 399 KCGSMEAANSVFSTMVVKDIISWNTMI---------------------GELKPDSRTMAC 437
Query: 294 VLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
VLPAC L+AL +G + V NAL+D+Y +CG + +R +F ++P K+
Sbjct: 438 VLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKD 497
Query: 343 LVSWNVMISVYG 354
LVSW VMI+ YG
Sbjct: 498 LVSWTVMIAGYG 509
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 144/331 (43%), Gaps = 76/331 (22%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ Y G + + L M +GV+ D + AC+ GKDV+DY
Sbjct: 319 SWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDY- 377
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
IK ME S LF V N+L+D YAKC ++ ++
Sbjct: 378 -------------------IKANNME--SNLF--------VCNALMDMYAKCGSMEAANS 408
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS + KD++SWN M+ +++P++ +++ VL ACA +
Sbjct: 409 VFSTMVVKDIISWNTMIG-----------------------ELKPDSRTMACVLPACASL 445
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ GK IHGY+LR+ + L CG + + +F+ + ++D+V W +I
Sbjct: 446 SALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMI 505
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN---- 316
+ + G +A+ ++ A ++P+ V+ +S+L AC L QG + N
Sbjct: 506 AGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNI 565
Query: 317 --------ALIDMYGRCGAIQKSRKIFVLMP 339
++D+ R G + K+ + +P
Sbjct: 566 EPKLEHYACMVDLLSRTGNLSKAYEFMETLP 596
Score = 45.1 bits (105), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 13/113 (11%)
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS 312
V +N+ I F + G + +A++L+ + + T T SVL C L + G S
Sbjct: 66 VTDYNAKILHFCQLGDLENAMELI--CMCQKSELETKTYGSVLQLCAGLKSFTDGKKVHS 123
Query: 313 FVWN-----------ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + L+ Y CG +++ R++F M KN+ WN M+S Y
Sbjct: 124 IIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYA 176
>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/352 (26%), Positives = 150/352 (42%), Gaps = 85/352 (24%)
Query: 52 LFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111
LF M+ G P+ F P V KAC+ Y V+ I + +ACV+
Sbjct: 124 LFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLGMGPHACVQ-------- 175
Query: 112 KCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGY 171
N+++ Y CR + + F I + +VSWN+M+AGY
Sbjct: 176 ----------------------NAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGY 213
Query: 172 ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHL 231
+ GF +E L EM+Q ++ + +L +L+A ++ + LG+ +H Y++ + +
Sbjct: 214 SKMGFCDEAILLFQ--EMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEI 271
Query: 232 STAC------------------------------------------GFVICSCSVFNQLS 249
+ G V + +FN +
Sbjct: 272 DSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMP 331
Query: 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG 309
++VV WNSII V+ GQ +A++L + ++ V P+ T+VS+L C L G
Sbjct: 332 VKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQ 391
Query: 310 TGSFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
++ N+LIDMY +CGA+Q + IF MP KN+VSWNV+I
Sbjct: 392 AHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVII 443
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/351 (23%), Positives = 168/351 (47%), Gaps = 30/351 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y+ +G+ +E + LF M+ GV D F + A S+ + +G+ V+ Y+
Sbjct: 205 SWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYI 264
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSH 150
+ E ++ V L+D++ KCG ++ +F++M D+D + S+++ YA ++ +
Sbjct: 265 VITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENAV 324
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F+ + K++VSWN+++ G E L M + + + P+ +L +L+ C+
Sbjct: 325 QIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCI--SGVMPDDATLVSILSCCSN 382
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ LGK H Y+ + I +S CG + + +F + ++VV WN I
Sbjct: 383 TGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVI 442
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------ 307
I A G +A+++ + + + + P+ +T +L AC + G
Sbjct: 443 IGALALHGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFR 502
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMIS---VYG 354
+ G + ++D+ GR G + ++ + MP K ++V W ++ +YG
Sbjct: 503 ISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPVKPDVVVWGALLGACRIYG 553
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 114/231 (49%), Gaps = 24/231 (10%)
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
L+ +H F +I Q + +N ++ GY+ + + +LL +M+ PN + VL
Sbjct: 87 LRYAHLLFDQIPQPNKFMYNHLIRGYS--NSNDPMKSLLLFRQMVSAGPMPNQFTFPFVL 144
Query: 206 AACA-----------QVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVV 254
ACA + +KLG H V + AC ++ + VF+ +S R +V
Sbjct: 145 KACAAKPFYWEAVIVHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIV 204
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK-----------LAA 303
WNS+I+ + + G +A+ L ++++ V+ + T+VS+L A K L
Sbjct: 205 SWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYI 264
Query: 304 LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ G+ S V NALIDMY +CG +Q ++ +F M K++VSW M++ Y
Sbjct: 265 VITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYA 315
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/345 (22%), Positives = 141/345 (40%), Gaps = 97/345 (28%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++LG VH ++++ GVE+ + + + L++++ +WTSM+
Sbjct: 254 LDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNA 313
Query: 40 Y-------------------NVL------------GYYEEIVNLFYLMIDKGVRPDHFVC 68
Y NV+ G Y E V LF+ M GV PD
Sbjct: 314 YANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATL 373
Query: 69 PKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ 128
+ CS D +GK + Y+ C + S
Sbjct: 374 VSILSCCSNTGDLALGKQAHCYI---------------------CDNIITVS-------- 404
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
+ NSLID YAKC L+ + F + +K++VSWN ++ AL GF EE + M+
Sbjct: 405 -VTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQ 463
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL---------RHH---IHLSTACG 236
+ + P+ I+ +G+L+AC+ V +G+ ++ H+ + L G
Sbjct: 464 --ASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFRISPGVEHYACMVDLLGRGG 521
Query: 237 FVICSCSVFNQLSTR-DVVVWNSIISAFVRSGQVVDALDLLRDVI 280
F+ + ++ ++ + DVVVW +++ A G + A +++ ++
Sbjct: 522 FLGEAMTLIQKMPVKPDVVVWGALLGACRIYGNLEIAKQIMKQLL 566
>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/372 (25%), Positives = 176/372 (47%), Gaps = 80/372 (21%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDV--YDY 90
W M+ Y +G ++E + LF +M++KG+ K ++ EL D +DV ++
Sbjct: 168 WNFMVSEYAKIGDFKESICLFKIMVEKGIEG------KRPESAFELFDKLCDRDVISWNS 221
Query: 91 MISIKFEGNACVKRPL------------------LDLFIKC--------GRMEITSGLFE 124
MIS + N +R L + + + C G+ + +
Sbjct: 222 MIS-GYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKS 280
Query: 125 EMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLL 184
++ +N+L+D Y+KC L + F K+ ++++VSW +M+AGY G + LL
Sbjct: 281 SFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLL 340
Query: 185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LST 233
+ME + ++ + ++++ +L ACA+ + GK +H Y+ +++ +
Sbjct: 341 QQME--KEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYA 398
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
CG + + SVF+ + +D++ WN++I +KP++ T+
Sbjct: 399 KCGSMEAANSVFSTMVVKDIISWNTMI---------------------GELKPDSRTMAC 437
Query: 294 VLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
VLPAC L+AL +G + V NAL+D+Y +CG + +R +F ++P K+
Sbjct: 438 VLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKD 497
Query: 343 LVSWNVMISVYG 354
LVSW VMI+ YG
Sbjct: 498 LVSWTVMIAGYG 509
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 144/331 (43%), Gaps = 76/331 (22%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ Y G + + L M +GV+ D + AC+ GKDV+DY
Sbjct: 319 SWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDY- 377
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
IK ME S LF V N+L+D YAKC ++ ++
Sbjct: 378 -------------------IKANNME--SNLF--------VCNALMDMYAKCGSMEAANS 408
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS + KD++SWN M+ +++P++ +++ VL ACA +
Sbjct: 409 VFSTMVVKDIISWNTMIG-----------------------ELKPDSRTMACVLPACASL 445
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ GK IHGY+LR+ + L CG + + +F+ + ++D+V W +I
Sbjct: 446 SALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMI 505
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN---- 316
+ + G +A+ ++ A ++P+ V+ +S+L AC L QG + N
Sbjct: 506 AGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNI 565
Query: 317 --------ALIDMYGRCGAIQKSRKIFVLMP 339
++D+ R G + K+ + +P
Sbjct: 566 EPKLEHYACMVDLLSRTGNLSKAYEFIETLP 596
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 98/252 (38%), Gaps = 79/252 (31%)
Query: 179 EVTNLLDEMEMI----QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA 234
++ +L + ME+I +++++ T + S VL CA +K GK +H + + + + A
Sbjct: 78 QLGDLENAMELICMCKKSELE--TKTYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEA 135
Query: 235 CGFVICS----CS-------VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL------- 276
G + S C VF+ + ++V +WN ++S + + G +++ L
Sbjct: 136 LGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKG 195
Query: 277 ------------------RDVIVAN--------------------------VKPNTVTIV 292
RDVI N + + TI+
Sbjct: 196 IEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATII 255
Query: 293 SVLPACLKLAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHK 341
SVL C L G S N L+DMY +CG + + ++F M +
Sbjct: 256 SVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGER 315
Query: 342 NLVSWNVMISVY 353
N+VSW MI+ Y
Sbjct: 316 NVVSWTSMIAGY 327
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 13/113 (11%)
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS 312
V +N+ I F + G + +A++L+ + + T T SVL C L + G S
Sbjct: 66 VTDYNAKILHFCQLGDLENAMELI--CMCKKSELETKTYSSVLQLCAGLKSFTDGKKVHS 123
Query: 313 FVWN-----------ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + L+ Y CG +++ R++F M KN+ WN M+S Y
Sbjct: 124 IIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYA 176
>gi|302774729|ref|XP_002970781.1| hypothetical protein SELMODRAFT_11658 [Selaginella moellendorffii]
gi|300161492|gb|EFJ28107.1| hypothetical protein SELMODRAFT_11658 [Selaginella moellendorffii]
Length = 517
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/352 (26%), Positives = 161/352 (45%), Gaps = 68/352 (19%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRP-DHFVCPKVYKACSELKDYRVGKDVYDY 90
+W+ M+ Y G+ + ++ M+ + + D ACS L D GK +++
Sbjct: 66 SWSIMIAAYAQNGHPTFALAVYREMLQRSIHAIDSTTYVSALSACSALGDLETGKSIHER 125
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
++S K E +D F+ +LI Y+KC L+ +H
Sbjct: 126 ILSSKLE---------IDAFL---------------------GTALISMYSKCGCLEEAH 155
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + +KD+V WNAM+A +A G + N + + ++QPN ++L L AC+
Sbjct: 156 ECFDCVLRKDIVVWNAMIAAFAQNGHPQRALNFFHAIP--RGELQPNNLTLVSALDACSD 213
Query: 211 VKGVKLGKAIH------------GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ ++ G+ IH G + ++L CG I + +VF+ L R VV W S
Sbjct: 214 LAALEEGRKIHALIESSPELTLGGSMGNALVNLYGKCGRAIDARAVFDALRPRTVVSWTS 273
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC----------------LKLA 302
+I+A+ ++G AL+L + + +A PN VT++SVL AC ++LA
Sbjct: 274 MIAAYAQNGHSDQALELFQRMDMA---PNGVTLLSVLQACSEHRKGSHAGKTIHAHIRLA 330
Query: 303 ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G + +AL++MYG+ G + + +F M ++ ++W MIS Y
Sbjct: 331 ----GFDGSPLLDSALVNMYGKVGNLDSAMVVFTQMRERDAITWTAMISSYA 378
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 131/268 (48%), Gaps = 26/268 (9%)
Query: 111 IKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAG 170
+ GR L +D+ L+ N L+ Y +C L + F K +++L SW+ M+A
Sbjct: 14 LHSGRRLHAQILRHRLDRHTLLCNLLVQMYGRCGCLDEARSIFDKTPERNLFSWSIMIAA 73
Query: 171 YALGGFREEVTNLLDEMEMIQTDMQP-NTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI 229
YA G L EM+Q + ++ + L+AC+ + ++ GK+IH +L +
Sbjct: 74 YAQNG--HPTFALAVYREMLQRSIHAIDSTTYVSALSACSALGDLETGKSIHERILSSKL 131
Query: 230 HLSTACGFVI------CSC-----SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRD 278
+ G + C C F+ + +D+VVWN++I+AF ++G AL+
Sbjct: 132 EIDAFLGTALISMYSKCGCLEEAHECFDCVLRKDIVVWNAMIAAFAQNGHPQRALNFFHA 191
Query: 279 VIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNALIDMYGRCG 326
+ ++PN +T+VS L AC LAAL +G L G + NAL+++YG+CG
Sbjct: 192 IPRGELQPNNLTLVSALDACSDLAALEEGRKIHALIESSPELTLGGSMGNALVNLYGKCG 251
Query: 327 AIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+R +F + + +VSW MI+ Y
Sbjct: 252 RAIDARAVFDALRPRTVVSWTSMIAAYA 279
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/400 (22%), Positives = 163/400 (40%), Gaps = 84/400 (21%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+E G +H ++ +E+ AFLG+ L+ ++ W +M+
Sbjct: 116 LETGKSIHERILSSKLEIDAFLGTALISMYSKCGCLEEAHECFDCVLRKDIVVWNAMIAA 175
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ G+ + +N F+ + ++P++ ACS+L G+ ++ + S
Sbjct: 176 FAQNGHPQRALNFFHAIPRGELQPNNLTLVSALDACSDLAALEEGRKIHALIES------ 229
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
P L L G N+L++ Y KC + F ++ +
Sbjct: 230 ----SPELTLGGSMG-------------------NALVNLYGKCGRAIDARAVFDALRPR 266
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ-VKGVKLGK 218
+VSW +M+A YA G ++ L M DM PN ++L VL AC++ KG GK
Sbjct: 267 TVVSWTSMIAAYAQNGHSDQALELFQRM-----DMAPNGVTLLSVLQACSEHRKGSHAGK 321
Query: 219 AIHGYVL-----------RHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
IH ++ +++ G + + VF Q+ RD + W ++IS++ + G
Sbjct: 322 TIHAHIRLAGFDGSPLLDSALVNMYGKVGNLDSAMVVFTQMRERDAITWTAMISSYAQHG 381
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------- 314
AL L +++ + + VT+ V AC + LG FV
Sbjct: 382 HSRQALSLFSSMLLDGIATDAVTLACVSSACSHSGDVK--LGWDYFVSSVRDFGERPTFE 439
Query: 315 -WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ + DM R G +Q++ + MP +LVSW ++S
Sbjct: 440 HYVVMSDMLSRAGRLQEAEDLLRSMPFQPDLVSWRTLLSA 479
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 89/174 (51%), Gaps = 23/174 (13%)
Query: 204 VLAACAQVKGVKLGKAIHGYVLRHHIHLST-ACGFVI-----CSC-----SVFNQLSTRD 252
+L C++ + + G+ +H +LRH + T C ++ C C S+F++ R+
Sbjct: 4 LLRQCSKQRSLHSGRRLHAQILRHRLDRHTLLCNLLVQMYGRCGCLDEARSIFDKTPERN 63
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP-NTVTIVSVLPACLKLAALPQG---- 307
+ W+ +I+A+ ++G AL + R+++ ++ ++ T VS L AC L L G
Sbjct: 64 LFSWSIMIAAYAQNGHPTFALAVYREMLQRSIHAIDSTTYVSALSACSALGDLETGKSIH 123
Query: 308 -------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L +F+ ALI MY +CG ++++ + F + K++V WN MI+ +
Sbjct: 124 ERILSSKLEIDAFLGTALISMYSKCGCLEEAHECFDCVLRKDIVVWNAMIAAFA 177
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 121/271 (44%), Gaps = 64/271 (23%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSE-LKDYRVGKDVYDY 90
+WTSM+ Y G+ ++ + LF M + P+ V +ACSE K GK ++ +
Sbjct: 270 SWTSMIAAYAQNGHSDQALELFQRM---DMAPNGVTLLSVLQACSEHRKGSHAGKTIHAH 326
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ F+G+ PLLD ++L++ Y K L +
Sbjct: 327 IRLAGFDGS-----PLLD-------------------------SALVNMYGKVGNLDSAM 356
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM--EMIQTDMQPNTISLSGVLAAC 208
F++++++D ++W AM++ YA G + +L M + I TD ++L+ V +AC
Sbjct: 357 VVFTQMRERDAITWTAMISSYAQHGHSRQALSLFSSMLLDGIATD----AVTLACVSSAC 412
Query: 209 AQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLST-RDVVVWNSIISAFVRSG 267
+ VKLG + + S F + T VV + ++S R+G
Sbjct: 413 SHSGDVKLG-----------------WDYFVSSVRDFGERPTFEHYVVMSDMLS---RAG 452
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
++ +A DLLR + +P+ V+ ++L AC
Sbjct: 453 RLQEAEDLLRSM---PFQPDLVSWRTLLSAC 480
>gi|449484874|ref|XP_004157004.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08490-like [Cucumis sativus]
Length = 881
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/404 (24%), Positives = 185/404 (45%), Gaps = 85/404 (21%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN----WTSMMGMYNVLGYYE----------- 47
+G +H+ ++ G++ +G+ L+ ++ W +N + + +
Sbjct: 164 VGKSIHSFVMKSGLDRDTLVGNALISMYAKSGQPWYDAYAAFNSIIHKDVVTWNTIISAL 223
Query: 48 -------EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY---RVGKDVYDYMISIKFE 97
+ + LF LM+++ + P++ + C+ + R GK+++ Y+
Sbjct: 224 AEKNLMFDALQLFSLMLEEPIEPNYITIACILPVCASFGNNVSCRFGKEIHGYI------ 277
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
+R E+ +D V N+L++ Y + ++ + FS +K
Sbjct: 278 ----HRR-------------------TELIEDISVCNALMNLYLRVGQMEEAEILFSHLK 314
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
Q+DLVSWN +++GY+L E + ++ + +D P++++L VL ACA + +++G
Sbjct: 315 QRDLVSWNTLISGYSLNDKWLEAVDHFCKLLCLGSD--PDSVTLISVLPACAYSQNLRIG 372
Query: 218 KAIHGYVLRHHI------------HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVR 265
K IHGY+LRH I T C V + F+ +S++D++ WNS+++AF
Sbjct: 373 KMIHGYILRHPILSEDSTVGNALVSFYTKCNDVKSAFHSFSLISSKDLISWNSVLNAFAE 432
Query: 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL---------------AALPQGLGT 310
G L LL ++ KP+ TI+S++ C+ + A L +
Sbjct: 433 FGNTTQFLRLLHLMLRERFKPDHFTILSIINFCITVLGGCKVKEVHCYSVRACLFEA-DY 491
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISVY 353
G + NAL+D Y +CG I + KIF K NLV+ N MIS Y
Sbjct: 492 GPTILNALLDAYSKCGIIDYALKIFESSSGKRNLVTCNSMISCY 535
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 84/353 (23%), Positives = 159/353 (45%), Gaps = 59/353 (16%)
Query: 30 FCNWTSMMGMYNVLGYYEEIVNLFY--LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDV 87
F +W+S + + ++E++++F G +PD+ + ++K+C+ L VGK +
Sbjct: 6 FTSWSSTIRNLCLNAKHQEVLSVFVHKFQCSSGFKPDNHIFAAIFKSCAALFAINVGKAL 65
Query: 88 YDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147
Y + V + LL+L+ +CG + LFE++++
Sbjct: 66 QGYAVKQGEIVCQSVYKGLLNLYARCGAFDECWKLFEQLNR------------------- 106
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
+D+V+WN +L+GY + L + +++P+ I+++ +L
Sbjct: 107 -----------RDVVTWNIILSGYCRSQIHDTKAIRLFVKMHAEGEVKPSAITIASILPV 155
Query: 208 CAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSC------------SVFNQLSTRDVVV 255
C++V +GK+IH +V++ + T G + S + FN + +DVV
Sbjct: 156 CSRVGKGVVGKSIHSFVMKSGLDRDTLVGNALISMYAKSGQPWYDAYAAFNSIIHKDVVT 215
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA------------ 303
WN+IISA + DAL L ++ ++PN +TI +LP C
Sbjct: 216 WNTIISALAEKNLMFDALQLFSLMLEEPIEPNYITIACILPVCASFGNNVSCRFGKEIHG 275
Query: 304 ---LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L V NAL+++Y R G ++++ +F + ++LVSWN +IS Y
Sbjct: 276 YIHRRTELIEDISVCNALMNLYLRVGQMEEAEILFSHLKQRDLVSWNTLISGY 328
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/335 (24%), Positives = 155/335 (46%), Gaps = 29/335 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ + G + + L +LM+ + +PDHF + C + K+V+ Y
Sbjct: 422 SWNSVLNAFAEFGNTTQFLRLLHLMLRERFKPDHFTILSIINFCITVLGGCKVKEVHCYS 481
Query: 92 I-SIKFEGN--ACVKRPLLDLFIKCGRMEITSGLFEEMD--QDFLVNNSLIDFYAKCRYL 146
+ + FE + + LLD + KCG ++ +FE ++ + NS+I Y C+
Sbjct: 482 VRACLFEADYGPTILNALLDAYSKCGIIDYALKIFESSSGKRNLVTCNSMISCYVNCKSP 541
Query: 147 KVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
+ FS + + DL +WN M+ YA + L +++ M+P+ +S+ +L
Sbjct: 542 NDALTIFSGMSETDLTTWNLMIRVYAENNCPRDALGLFRRLQI--KGMKPDAVSIMSLLP 599
Query: 207 ACAQVKGVKLGKAIHGYVLR---HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVW 256
C ++ +L K HGY R ++L A CG V C+ +F S +D+V++
Sbjct: 600 VCNELASFRLLKECHGYSFRSRFEDVYLDGALLDAYAKCGAVDCAYKLFESSSQKDLVMF 659
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-- 314
S+IS + G +AL + +++ + VKP+ V + S+L AC + QGL +
Sbjct: 660 TSMISGYAIHGMGEEALKVFTNMLESGVKPDHVVVTSILSACSHTGLVDQGLNIFHSMEE 719
Query: 315 ----------WNALIDMYGRCGAIQKSRKIFVLMP 339
+ ++D+ R G I+ + + MP
Sbjct: 720 VIHIKPTMEHYACVVDLLARGGRIKDAYSFVIGMP 754
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 92/379 (24%), Positives = 163/379 (43%), Gaps = 87/379 (22%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ Y++ + E V+ F ++ G PD V AC+ ++ R+GK ++ Y+
Sbjct: 320 SWNTLISGYSLNDKWLEAVDHFCKLLCLGSDPDSVTLISVLPACAYSQNLRIGKMIHGYI 379
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + P+L +D V N+L+ FY KC +K +
Sbjct: 380 L----------RHPILS-------------------EDSTVGNALVSFYTKCNDVKSAFH 410
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS I KDL+SWN++L +A G + LL M ++ +P+ ++ ++ C V
Sbjct: 411 SFSLISSKDLISWNSVLNAFAEFGNTTQFLRLLHLM--LRERFKPDHFTILSIINFCITV 468
Query: 212 KGVKLGKAIHGYVLRHHIHLS--------------TACGFV------------------- 238
G K +H Y +R + + + CG +
Sbjct: 469 LGGCKVKEVHCYSVRACLFEADYGPTILNALLDAYSKCGIIDYALKIFESSSGKRNLVTC 528
Query: 239 --ICSC-----------SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK 285
+ SC ++F+ +S D+ WN +I + + DAL L R + + +K
Sbjct: 529 NSMISCYVNCKSPNDALTIFSGMSETDLTTWNLMIRVYAENNCPRDALGLFRRLQIKGMK 588
Query: 286 PNTVTIVSVLPACLKLAALP-----QGLGTGS-----FVWNALIDMYGRCGAIQKSRKIF 335
P+ V+I+S+LP C +LA+ G S ++ AL+D Y +CGA+ + K+F
Sbjct: 589 PDAVSIMSLLPVCNELASFRLLKECHGYSFRSRFEDVYLDGALLDAYAKCGAVDCAYKLF 648
Query: 336 VLMPHKNLVSWNVMISVYG 354
K+LV + MIS Y
Sbjct: 649 ESSSQKDLVMFTSMISGYA 667
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 102/219 (46%), Gaps = 27/219 (12%)
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D SW++ + L +EV ++ + +P+ + + +CA + + +GKA
Sbjct: 5 DFTSWSSTIRNLCLNAKHQEVLSVFVHKFQCSSGFKPDNHIFAAIFKSCAALFAINVGKA 64
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+ GY ++ ++L CG +F QL+ RDVV WN I+S + RS Q
Sbjct: 65 LQGYAVKQGEIVCQSVYKGLLNLYARCGAFDECWKLFEQLNRRDVVTWNIILSGYCRS-Q 123
Query: 269 VVD--ALDLLRDVIV-ANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFV 314
+ D A+ L + VKP+ +TI S+LP C ++ + GL + V
Sbjct: 124 IHDTKAIRLFVKMHAEGEVKPSAITIASILPVCSRVGKGVVGKSIHSFVMKSGLDRDTLV 183
Query: 315 WNALIDMYGRCGAI-QKSRKIFVLMPHKNLVSWNVMISV 352
NALI MY + G + F + HK++V+WN +IS
Sbjct: 184 GNALISMYAKSGQPWYDAYAAFNSIIHKDVVTWNTIISA 222
>gi|224056897|ref|XP_002299078.1| predicted protein [Populus trichocarpa]
gi|222846336|gb|EEE83883.1| predicted protein [Populus trichocarpa]
Length = 488
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/377 (24%), Positives = 170/377 (45%), Gaps = 40/377 (10%)
Query: 6 QVHAHLIVCGV----ELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVN---LFYLMID 58
Q+HA +V G+ LCA +LLE + +M +Y +E I + Y +
Sbjct: 31 QLHAQFVVSGLLGYHPLCA---RRLLEAY---VTMSQIYYAFSIFERIPSPDVFVYNTMI 84
Query: 59 KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEI 118
+G+ D+F V KACS LK GK V+ +I + + L+ ++ G ++
Sbjct: 85 RGLTMDNFTYTFVLKACSHLKAPFEGKQVHCQIIKAGIVPDTHIHSSLIHMYTNSGSIDD 144
Query: 119 TSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFR 177
+ E +++ L N++I Y + + F + KD SW+A++ GY G
Sbjct: 145 AERVLGEFSEENTLAKNAMISGYLTEGRVDKARKMFDDMAAKDAASWSALITGYTKNGMH 204
Query: 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA--- 234
E L +M + + + PN +L +L+AC Q+ + G+ IH Y+ + + +ST
Sbjct: 205 TEALALFQDM--MVSHILPNEAALVSLLSACGQLGTLHQGRWIHAYIDKTRVLMSTKLTT 262
Query: 235 --------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286
G + C +F +++ RDVV W +ISAF G L +++ ++P
Sbjct: 263 ALIDMYAKSGSIECGYGLFQKMARRDVVTWGVMISAFAIHGHASKCFQLFDEMLADGIRP 322
Query: 287 NTVTIVSVLPACLK----------LAALPQGLGTGSFV--WNALIDMYGRCGAIQKSRKI 334
N V V++L AC + + G G + + ++D+ GR G + + ++
Sbjct: 323 NKVIFVAILSACSHAGCVEEGRQYFSQMEHGFGIKPSIEHYGCMVDLLGRAGLLADAEQL 382
Query: 335 FVLMPHK-NLVSWNVMI 350
+ MP + N + W ++
Sbjct: 383 ILSMPKQPNSIIWGSLL 399
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 112/277 (40%), Gaps = 76/277 (27%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
L L++ Y + + F +I D+ +N M+ G + F
Sbjct: 47 LCARRLLEAYVTMSQIYYAFSIFERIPSPDVFVYNTMIRGLTMDNF-------------- 92
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIH------GYVLRHHIHLST----------- 233
+ + VL AC+ +K GK +H G V HIH S
Sbjct: 93 ---------TYTFVLKACSHLKAPFEGKQVHCQIIKAGIVPDTHIHSSLIHMYTNSGSID 143
Query: 234 -------------------------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
G V + +F+ ++ +D W+++I+ + ++G
Sbjct: 144 DAERVLGEFSEENTLAKNAMISGYLTEGRVDKARKMFDDMAAKDAASWSALITGYTKNGM 203
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNA 317
+AL L +D++V+++ PN +VS+L AC +L L QG +++ A
Sbjct: 204 HTEALALFQDMMVSHILPNEAALVSLLSACGQLGTLHQGRWIHAYIDKTRVLMSTKLTTA 263
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
LIDMY + G+I+ +F M +++V+W VMIS +
Sbjct: 264 LIDMYAKSGSIECGYGLFQKMARRDVVTWGVMISAFA 300
>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
Length = 814
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/352 (28%), Positives = 170/352 (48%), Gaps = 49/352 (13%)
Query: 49 IVNLF-YLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL 107
+V LF + M G D V K+CS L+D+ G ++ + + F+ + LL
Sbjct: 141 VVELFDFRMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALL 200
Query: 108 DLFIKC--GRMEITSGL--FEEMDQ-------------------DFLVNNSLIDFYAKCR 144
D++ KC ++ GL F+EM + D ++ + +D Y KC
Sbjct: 201 DMYAKCCVQNDDLRGGLELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCN 260
Query: 145 YLK-VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSG 203
L S+ F+ + +L S+NA++ GYA E + ++ ++ + + +SLSG
Sbjct: 261 NLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQ--KSGLGLDEVSLSG 318
Query: 204 VLAACAQVKGVKLGKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRD 252
ACA +KG G +HG ++ +I ++ A CG ++ +C VF ++ +RD
Sbjct: 319 AXRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRD 378
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----- 307
V WN+II+A ++G L L ++ + ++P+ T SVL AC AL G
Sbjct: 379 AVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHN 438
Query: 308 ------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+G SFV ALIDMY +CG ++K+ K+ + + +VSWN +IS +
Sbjct: 439 RIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGF 490
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/364 (22%), Positives = 164/364 (45%), Gaps = 58/364 (15%)
Query: 14 CG--VELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKV 71
CG VE C + +W +++ + G E+ ++LF M+ G+ PD F V
Sbjct: 361 CGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSV 420
Query: 72 YKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFL 131
KAC+ + G ++++ +I + M D
Sbjct: 421 LKACAGWQALNCGMEIHNRIIKSR------------------------------MGLDSF 450
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V +LID Y+KC ++ + ++ ++ +VSWNA+++G++L EE +M ++
Sbjct: 451 VGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKM--LE 508
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVIC 240
+ P+ + + +L CA + V+LGK IH +++ + + + CG +
Sbjct: 509 MGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQD 568
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+F + RD V WN+++ + + G +AL + + + NVKPN T ++VL AC
Sbjct: 569 FQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGH 628
Query: 301 LAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWN 347
+ + +GL + ++ ++D+ GR G + K+ ++ MP + + V W
Sbjct: 629 MGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWR 688
Query: 348 VMIS 351
++S
Sbjct: 689 TLLS 692
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 146/329 (44%), Gaps = 54/329 (16%)
Query: 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL 107
E + +F L+ G+ D +AC+ +K G V+ + + N CV +L
Sbjct: 296 EALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAIL 355
Query: 108 DLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAM 167
D++ KCG + +FEEM VS +D VSWNA+
Sbjct: 356 DMYGKCGALVEACLVFEEM---------------------VS---------RDAVSWNAI 385
Query: 168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH 227
+A + G E+ +L + M+Q+ M+P+ + VL ACA + + G IH +++
Sbjct: 386 IAAHEQNGNEEKTLSLF--VWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKS 443
Query: 228 HIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL 276
+ L + CG + + + ++L+ + VV WN+IIS F Q +A
Sbjct: 444 RMGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTF 503
Query: 277 RDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRC 325
++ V P+ T ++L C L + G L + +++ + L+DMY +C
Sbjct: 504 SKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKC 563
Query: 326 GAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G +Q + IF P+++ V+WN M+ Y
Sbjct: 564 GNMQDFQLIFEKAPNRDFVTWNAMVCGYA 592
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 125/295 (42%), Gaps = 72/295 (24%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G+++H +I + L +F+G L++++ +W +++ +++
Sbjct: 433 GMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSL 492
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
EE F M++ GV PD+F + C+ L +GK ++ +I
Sbjct: 493 QKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIK--------- 543
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+E+ D ++++L+D Y+KC ++ F K +D V
Sbjct: 544 ---------------------KELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFV 582
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+WNAM+ GYA G EE + + M++ +++PN + VL AC + V+ G
Sbjct: 583 TWNAMVCGYAQHGLGEEALKIFEYMQL--ENVKPNHATFLAVLRACGHMGLVEKG----- 635
Query: 223 YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLR 277
H+ H ++ + + QL ++ ++ RSGQV AL+L+
Sbjct: 636 ---LHYFHS------MLSNYGLDPQLEH-----YSCVVDIMGRSGQVSKALELIE 676
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 110/283 (38%), Gaps = 52/283 (18%)
Query: 96 FEGNACVKRPLLDLFIKC--------GRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147
++ K+ +F +C G+ + E V N LI Y KC L
Sbjct: 35 YQATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLG 94
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM--------EMIQTDMQP--- 196
+ F + Q+D VSWNAML GYA G L D M E+ M
Sbjct: 95 FAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGT 154
Query: 197 --NTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVV 254
+ + + VL +C+ ++ G IHG L+ GF C V + D+
Sbjct: 155 VFDRTTFAVVLKSCSSLEDHGGGIQIHG--------LAVKMGF---DCDVVTGSALLDMY 203
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL--AALPQGLGTGS 312
+ + +R G L+L +++ A V L+L AL GT
Sbjct: 204 AKCCVQNDDLRGG-----LELFKEMQKAGV------------GALQLHGHALKTDFGTDV 246
Query: 313 FVWNALIDMYGRCGAIQK-SRKIFVLMPHKNLVSWNVMISVYG 354
+ A +DMY +C + S ++F +P+ NL S+N +I Y
Sbjct: 247 VIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYA 289
>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Cucumis sativus]
Length = 666
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 126/244 (51%), Gaps = 24/244 (9%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
+ LI Y KC L + F ++ QK++VSW AM++ Y+ GF E NL +EM++
Sbjct: 127 LRTRLIVLYNKCDCLGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLF--VEMLR 184
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVIC 240
+D +PN + + +L +C G + G+ IH ++ + + + G +
Sbjct: 185 SDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICD 244
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ VF+ L RDVV +IIS + + G +AL L R + + + N+VT SVL A
Sbjct: 245 AHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSG 304
Query: 301 LAALPQG-------LGTGSFVW----NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
LAAL G L +G + + N+LIDMY +CG + +R+IF MP + +SWN M
Sbjct: 305 LAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAM 364
Query: 350 ISVY 353
+ Y
Sbjct: 365 LVGY 368
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/333 (21%), Positives = 145/333 (43%), Gaps = 57/333 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ Y+ G+ E +NLF M+ P+HF + +C + G+ ++
Sbjct: 158 SWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIA 217
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I +E + V +SL+D YAK + +H
Sbjct: 218 IKRNYESH------------------------------MFVGSSLLDMYAKSGRICDAHG 247
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + ++D+V+ A+++GYA G EE L ++++ M N+++ + VL A + +
Sbjct: 248 VFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQI--EGMNSNSVTYASVLTALSGL 305
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ GK +H +VLR I + + CG V + +F+ + R + WN+++
Sbjct: 306 AALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAML 365
Query: 261 SAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPAC-------------LKLAALPQ 306
+ + G + L+L + + N VKP+++T ++VL C +
Sbjct: 366 VGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKD 425
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
G+ + ++D+ GR G ++++ MP
Sbjct: 426 GIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMP 458
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 89/173 (51%), Gaps = 22/173 (12%)
Query: 204 VLAACAQVKGVKLGKAIHGYVLRH----HIHLSTA--CGFVICSC-----SVFNQLSTRD 252
+L C + ++ G+ +H ++++ ++L T + C C +F+++ ++
Sbjct: 96 ILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQKN 155
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKL 301
VV W ++ISA+ + G +AL+L +++ ++ +PN T ++L +C +
Sbjct: 156 VVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHS 215
Query: 302 AALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
A+ + + FV ++L+DMY + G I + +F +P +++V+ +IS Y
Sbjct: 216 IAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYA 268
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 80/376 (21%), Positives = 144/376 (38%), Gaps = 93/376 (24%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNW---------------------TSMMGMY 40
E G Q+H+ I E F+GS LL+++ T+++ Y
Sbjct: 208 ETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGY 267
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+G EE + LF + +G+ + V A S L GK V+ +++
Sbjct: 268 AQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLR------- 320
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
SG + + ++ NSLID Y+KC + + F + ++
Sbjct: 321 -------------------SGQYSYV----VLLNSLIDMYSKCGNVCYARRIFDSMPERT 357
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+SWNAML GY+ G EV L M + ++P++I+ VL+ C+ + +G I
Sbjct: 358 CISWNAMLVGYSKHGMAREVLELFKLMRE-ENKVKPDSITYLAVLSGCSHGQLEDMGLEI 416
Query: 221 HGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVV-----WNSIISAFVRSGQVVDALDL 275
+N ++ +D + + ++ R+G+V +A D
Sbjct: 417 -----------------------FYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDF 453
Query: 276 LRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW-----NA-----LIDMYGRC 325
++ + P S+L +C + + G+ G + NA L ++Y
Sbjct: 454 IKKMPFV---PTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASA 510
Query: 326 GAIQKSRKIFVLMPHK 341
G + R I LM K
Sbjct: 511 GKWEDMRNIRDLMQEK 526
>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 532
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/381 (23%), Positives = 173/381 (45%), Gaps = 51/381 (13%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCN-----------------------WTSMMGMYNV 42
Q+H+HLIV L F +++ +F W +++ ++
Sbjct: 28 QMHSHLIVSASRLDPFAAGKIISLFAVSSNADISHAYKLFLSLPHRTTFIWNTIIRIFVE 87
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
++L+ M+ G P+++ V +AC++ + VG + +I + +E V
Sbjct: 88 KNENATALSLYKNMLQTGFLPNNYTFSFVLRACTD--NSPVGLASHAQVIKLGWESYDFV 145
Query: 103 KRPLLDLFIKCGRMEITSGLFE-EMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
L+ L+ +E LF+ +D + +LI+ Y K +++ + F ++ +++
Sbjct: 146 LNGLIHLYANWSSVEAARKLFDVSTCRDVITWTALINGYVKSGHVEFARELFDQMPERNE 205
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSW+AM+ GY G E L +++++ T ++PN + G L AC+ + + G+ IH
Sbjct: 206 VSWSAMITGYVHMGMFREALELFNDLQL--TGLRPNHAGIVGALTACSYLGSLDHGRWIH 263
Query: 222 GYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
YV R+ L CG + +CSVF ++ +D + S+IS GQ
Sbjct: 264 AYVDRNGTELDRVLGTALVDMYAKCGCIEIACSVFEKMPDKDAFAFTSLISGLANHGQSA 323
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL------------GTGSFVWNAL 318
DA+ L + V PN VT + VL AC ++ + +GL G + +
Sbjct: 324 DAIQLFGRMQSEKVIPNEVTFICVLSACSRMGLVDEGLRIFNCMSVVYGIEPGVQHYGCM 383
Query: 319 IDMYGRCGAIQKSRKIFVLMP 339
+D+ GR G +++++++ MP
Sbjct: 384 VDLLGRAGLLEEAKRLVREMP 404
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 112/276 (40%), Gaps = 55/276 (19%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCK--FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDE 186
D +I +A +SH F + + WN ++ + E T L
Sbjct: 41 DPFAAGKIISLFAVSSNADISHAYKLFLSLPHRTTFIWNTIIRIFVEK--NENATALSLY 98
Query: 187 MEMIQTDMQPNTISLSGVLAAC---------AQVKGVKLGKAIHGYVLRHHIHLSTACGF 237
M+QT PN + S VL AC + + +KLG + +VL IHL
Sbjct: 99 KNMLQTGFLPNNYTFSFVLRACTDNSPVGLASHAQVIKLGWESYDFVLNGLIHLYANWSS 158
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV--------------------------- 270
V + +F+ + RDV+ W ++I+ +V+SG V
Sbjct: 159 VEAARKLFDVSTCRDVITWTALINGYVKSGHVEFARELFDQMPERNEVSWSAMITGYVHM 218
Query: 271 ----DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------W 315
+AL+L D+ + ++PN IV L AC L +L G ++V
Sbjct: 219 GMFREALELFNDLQLTGLRPNHAGIVGALTACSYLGSLDHGRWIHAYVDRNGTELDRVLG 278
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
AL+DMY +CG I+ + +F MP K+ ++ +IS
Sbjct: 279 TALVDMYAKCGCIEIACSVFEKMPDKDAFAFTSLIS 314
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 9/119 (7%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC----- 298
+F L R +WN+II FV + AL L ++++ PN T VL AC
Sbjct: 66 LFLSLPHRTTFIWNTIIRIFVEKNENATALSLYKNMLQTGFLPNNYTFSFVLRACTDNSP 125
Query: 299 LKLAALPQ----GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ LA+ Q G + FV N LI +Y +++ +RK+F + +++++W +I+ Y
Sbjct: 126 VGLASHAQVIKLGWESYDFVLNGLIHLYANWSSVEAARKLFDVSTCRDVITWTALINGY 184
>gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial-like [Glycine max]
Length = 916
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 150/344 (43%), Gaps = 54/344 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W M+ + +YEE + F+ M GV+ V A + L G V+ + I
Sbjct: 185 WNVMISGHAKTAHYEEALAFFHQMSKHGVKSSRSTLASVLSAIASLAALNHGLLVHAHAI 244
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
FE + V +SLI+ Y KC+ +
Sbjct: 245 KQGFESS------------------------------IYVASSLINMYGKCQMPDDARQV 274
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I QK+++ WNAML Y+ GF V L ++MI + P+ + + +L+ CA +
Sbjct: 275 FDAISQKNMIVWNAMLGVYSQNGFLSNVMELF--LDMISCGIHPDEFTYTSILSTCACFE 332
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+++G+ +H +++ I + G + + F ++ RD + WN+II
Sbjct: 333 YLEVGRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIV 392
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGT 310
+V+ A L R +I+ + P+ V++ S+L AC + L G L T
Sbjct: 393 GYVQEEVEAGAFSLFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGLET 452
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
F ++LIDMY +CG I+ + K + MP +++VS N +I+ Y
Sbjct: 453 NLFAGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAGYA 496
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 161/343 (46%), Gaps = 71/343 (20%)
Query: 42 VLGYYEEIV-----NLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKF 96
++GY +E V +LF MI G+ PD + AC +K G+ + + +
Sbjct: 391 IVGYVQEEVEAGAFSLFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGL 450
Query: 97 EGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKI 156
E N +SLID Y+KC +K +H +S +
Sbjct: 451 ETN------------------------------LFAGSSLIDMYSKCGDIKDAHKTYSSM 480
Query: 157 KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKL 216
++ +VS NA++AGYAL +E + NLL EM+++ ++P+ I+ + ++ C V L
Sbjct: 481 PERSVVSVNALIAGYALKNTKESI-NLLHEMQIL--GLKPSEITFASLIDVCKGSAKVIL 537
Query: 217 GKAIHGYVLRHHIHLSTACGFVICSCSV----------------FNQLST-RDVVVWNSI 259
G IH +++ + CG S+ F++ S+ + +V+W ++
Sbjct: 538 GLQIHCAIVKRGL----LCGSEFLGTSLLGMYMDSQRLADANILFSEFSSLKSIVMWTAL 593
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN--- 316
IS +++ AL+L R++ N+ P+ T V+VL AC L++L G S +++
Sbjct: 594 ISGHIQNECSDVALNLYREMRDNNISPDQATFVTVLQACALLSSLHDGREIHSLIFHTGF 653
Query: 317 --------ALIDMYGRCGAIQKSRKIF-VLMPHKNLVSWNVMI 350
AL+DMY +CG ++ S ++F L K+++SWN MI
Sbjct: 654 DLDELTSSALVDMYAKCGDVKSSVQVFEELATKKDVISWNSMI 696
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 139/322 (43%), Gaps = 72/322 (22%)
Query: 47 EEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPL 106
E ++ + ++ G PD F AC++L++ +G+ V+ +CV
Sbjct: 29 ERVLQFYASFMNSGHSPDQFTFAVTLSACAKLQNLHLGRAVH-----------SCV---- 73
Query: 107 LDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL--VSW 164
IK G +E TS +LI YAKC L + F+ L VSW
Sbjct: 74 ----IKSG-LESTS----------FCQGALIHLYAKCNSLTCARTIFASAPFPHLHTVSW 118
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
A+++GY G E ++ D+M + P+ ++L VL A + LGK
Sbjct: 119 TALISGYVQAGLPHEALHIFDKM---RNSAVPDQVALVTVLNAY-----ISLGK------ 164
Query: 225 LRHHIHLSTACGFVICSCSVFNQLST--RDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
L AC +F Q+ R+VV WN +IS ++ +AL +
Sbjct: 165 ------LDDAC-------QLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKH 211
Query: 283 NVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWNALIDMYGRCGAIQKS 331
VK + T+ SVL A LAAL QG + +V ++LI+MYG+C +
Sbjct: 212 GVKSSRSTLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDA 271
Query: 332 RKIFVLMPHKNLVSWNVMISVY 353
R++F + KN++ WN M+ VY
Sbjct: 272 RQVFDAISQKNMIVWNAMLGVY 293
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 89/393 (22%), Positives = 165/393 (41%), Gaps = 78/393 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF--CN-------------------WTSMMGMYNV 42
G+ VHAH I G E ++ S L+ ++ C W +M+G+Y+
Sbjct: 236 GLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQ 295
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G+ ++ LF MI G+ PD F + C+ + VG+ ++ +I +F N V
Sbjct: 296 NGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFV 355
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L+D++ K G ++ FE M +D +
Sbjct: 356 NNALIDMYAKAGALKEAGKHFEHM------------------------------TYRDHI 385
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK---------- 212
SWNA++ GY +L MI + P+ +SL+ +L+AC +K
Sbjct: 386 SWNAIIVGYVQEEVEAGAFSLF--RRMILDGIVPDEVSLASILSACGNIKVLEAGQQFHC 443
Query: 213 -GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
VKLG + + I + + CG + + ++ + R VV N++I+ + +
Sbjct: 444 LSVKLGLETNLFAGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAGYALK-NTKE 502
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQGLGTGS-FVWNALI 319
+++LL ++ + +KP+ +T S++ C + A + +GL GS F+ +L+
Sbjct: 503 SINLLHEMQILGLKPSEITFASLIDVCKGSAKVILGLQIHCAIVKRGLLCGSEFLGTSLL 562
Query: 320 DMYGRCGAIQKSRKIFVLMPH-KNLVSWNVMIS 351
MY + + +F K++V W +IS
Sbjct: 563 GMYMDSQRLADANILFSEFSSLKSIVMWTALIS 595
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/356 (23%), Positives = 144/356 (40%), Gaps = 68/356 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYN----------------VLG 44
+E G Q H + G+E F GS L++++ + + + G
Sbjct: 435 LEAGQQFHCLSVKLGLETNLFAGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAG 494
Query: 45 Y----YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
Y +E +NL + M G++P + C +G ++ A
Sbjct: 495 YALKNTKESINLLHEMQILGLKPSEITFASLIDVCKGSAKVILGLQIH----------CA 544
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-K 159
VKR LL CG +FL SL+ Y + L ++ FS+ K
Sbjct: 545 IVKRGLL-----CG-------------SEFL-GTSLLGMYMDSQRLADANILFSEFSSLK 585
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+V W A+++G+ + NL EM ++ P+ + VL ACA + + G+
Sbjct: 586 SIVMWTALISGHIQNECSDVALNLYREMR--DNNISPDQATFVTVLQACALLSSLHDGRE 643
Query: 220 IHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTR-DVVVWNSIISAFVRSG 267
IH + L CG V S VF +L+T+ DV+ WNS+I F ++G
Sbjct: 644 IHSLIFHTGFDLDELTSSALVDMYAKCGDVKSSVQVFEELATKKDVISWNSMIVGFAKNG 703
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYG 323
AL + ++ + + P+ VT + VL AC + +G +++ +++ YG
Sbjct: 704 YAKCALKVFDEMTQSCITPDDVTFLGVLTACSHAGWVYEGRQ----IFDVMVNYYG 755
>gi|224126745|ref|XP_002319916.1| predicted protein [Populus trichocarpa]
gi|222858292|gb|EEE95839.1| predicted protein [Populus trichocarpa]
Length = 606
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 146/326 (44%), Gaps = 60/326 (18%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDK-GVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WTS++ + Y++ + FY M K G+ PD F V AC L + GK+V+ +
Sbjct: 231 WTSIISAFTRNDVYDKALGFFYSMCRKHGLSPDGFTFGTVLTACGNLGRLKQGKEVHAKV 290
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I+ GN V +SL+D Y KCR + S C
Sbjct: 291 ITSGLSGNV------------------------------FVESSLVDMYGKCRLVNQSQC 320
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ K+LVSW A+L GY G E V + E + + +T S VL ACA +
Sbjct: 321 VFDRMSVKNLVSWTALLGGYCQNGDFESVIRIFREGKKV------DTYSFGTVLRACAGL 374
Query: 212 KGVKLGKAIH-GYVLR----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
V+ GK +H YV R + L CG + + +F ++S R+++ WNS+I
Sbjct: 375 AAVRQGKEVHCQYVKRCCWRDVVTESALVDLYAKCGCIDFAYRIFVRMSVRNLITWNSMI 434
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------L 308
F ++G+ + L ++I ++P+ ++ V VL AC + QG +
Sbjct: 435 YGFAQNGRGGEVFQLFDEMIEEGIRPDYISFVGVLFACSHAGLVDQGKKYFAAMTEVYEI 494
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKI 334
G +N +ID+ GR G ++++ +
Sbjct: 495 KPGIEHYNCMIDLLGRAGLLEEAENL 520
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/391 (24%), Positives = 170/391 (43%), Gaps = 79/391 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF----------------------CNWTSMMGMYN 41
GIQ H+H I G++ F+G+ LL ++ +WTSM+ Y
Sbjct: 79 GIQFHSHAIKSGLDTDRFVGNSLLALYFKLGPNLFEARRVFDGLFYKDLISWTSMITGYV 138
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+ ++ + LF M+ G+ P+ F V KACS L D R+GK + ++ F+ N
Sbjct: 139 KVEKPKKSLELFLEMLGLGIEPNGFTLSAVIKACSGLGDLRLGKCFHGVVMVRGFDLNDV 198
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ L+D++ G +D LV F ++ Q D
Sbjct: 199 ISTALIDMY----------GRNSAVDDAILV--------------------FVELPQPDA 228
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
+ W ++++ + ++ M + + P+ + VL AC + +K GK +H
Sbjct: 229 ICWTSIISAFTRNDVYDKALGFFYSM-CRKHGLSPDGFTFGTVLTACGNLGRLKQGKEVH 287
Query: 222 GYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
V+ + + C V S VF+++S +++V W +++ + ++G
Sbjct: 288 AKVITSGLSGNVFVESSLVDMYGKCRLVNQSQCVFDRMSVKNLVSWTALLGGYCQNGDFE 347
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTG-SFV----W------NALI 319
+ + R+ K +T + +VL AC LAA+ QG +V W +AL+
Sbjct: 348 SVIRIFRE----GKKVDTYSFGTVLRACAGLAAVRQGKEVHCQYVKRCCWRDVVTESALV 403
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
D+Y +CG I + +IFV M +NL++WN MI
Sbjct: 404 DLYAKCGCIDFAYRIFVRMSVRNLITWNSMI 434
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 124/260 (47%), Gaps = 30/260 (11%)
Query: 118 ITSGLFEEMDQDFLVNNSLIDFYAKC-RYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGF 176
I SGL D D V NSL+ Y K L + F + KDL+SW +M+ GY
Sbjct: 87 IKSGL----DTDRFVGNSLLALYFKLGPNLFEARRVFDGLFYKDLISWTSMITGYVKVEK 142
Query: 177 REEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHL----S 232
++ L +EM+ ++PN +LS V+ AC+ + ++LGK HG V+ L S
Sbjct: 143 PKKSLELF--LEMLGLGIEPNGFTLSAVIKACSGLGDLRLGKCFHGVVMVRGFDLNDVIS 200
Query: 233 TAC-------GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN-V 284
TA V + VF +L D + W SIISAF R+ AL + + +
Sbjct: 201 TALIDMYGRNSAVDDAILVFVELPQPDAICWTSIISAFTRNDVYDKALGFFYSMCRKHGL 260
Query: 285 KPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRK 333
P+ T +VL AC L L QG L FV ++L+DMYG+C + +S+
Sbjct: 261 SPDGFTFGTVLTACGNLGRLKQGKEVHAKVITSGLSGNVFVESSLVDMYGKCRLVNQSQC 320
Query: 334 IFVLMPHKNLVSWNVMISVY 353
+F M KNLVSW ++ Y
Sbjct: 321 VFDRMSVKNLVSWTALLGGY 340
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 106/239 (44%), Gaps = 57/239 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
++ G +VHA +I G+ F+ S L++++ +WT+++G
Sbjct: 280 LKQGKEVHAKVITSGLSGNVFVESSLVDMYGKCRLVNQSQCVFDRMSVKNLVSWTALLGG 339
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G +E ++ +F +G + D + V +AC+ L R GK+V+ + +
Sbjct: 340 YCQNGDFESVIRIF----REGKKVDTYSFGTVLRACAGLAAVRQGKEVHCQYVKRCCWRD 395
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ L+DL+ KCG IDF + F ++ +
Sbjct: 396 VVTESALVDLYAKCG---------------------CIDFAYRI---------FVRMSVR 425
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+L++WN+M+ G+A G EV L D EMI+ ++P+ IS GVL AC+ V GK
Sbjct: 426 NLITWNSMIYGFAQNGRGGEVFQLFD--EMIEEGIRPDYISFVGVLFACSHAGLVDQGK 482
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 12/106 (11%)
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGL 308
I + +SG + +A+ +L + + S+L C K A+ GL
Sbjct: 32 IIQYCKSGSLFEAIHVLNSIDWTRLSNKPFFYASLLQTCTKAVSFTHGIQFHSHAIKSGL 91
Query: 309 GTGSFVWNALIDMYGRCGA-IQKSRKIFVLMPHKNLVSWNVMISVY 353
T FV N+L+ +Y + G + ++R++F + +K+L+SW MI+ Y
Sbjct: 92 DTDRFVGNSLLALYFKLGPNLFEARRVFDGLFYKDLISWTSMITGY 137
>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
Length = 807
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/388 (24%), Positives = 173/388 (44%), Gaps = 68/388 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSE--LKDY------RV 83
++T+MMG G ++ + LF M +R D V AC++ DY R+
Sbjct: 210 SFTAMMGGLAQSGAVDDALRLFARMSRSAIRVDPVAVSSVLGACAQACAGDYNVARAIRL 269
Query: 84 GKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYA- 141
+ ++ ++ F+ + V L+D++ K +M+ +FE M +V+ N L+ Y
Sbjct: 270 AQSIHALVVRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWNILVTGYGQ 329
Query: 142 ----------------------------------KCRYLKVSHCKFSKIKQKDLVSWNAM 167
K R + + F KI + + +WN +
Sbjct: 330 LGCYERALEVLDLMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKISKPSVTTWNTL 389
Query: 168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG----- 222
L+GY ++ L M+ ++QP+ +L+ +L+ C+++ ++LGK +H
Sbjct: 390 LSGYGQEELHQDTIELFRRMQ--HQNVQPDRTTLAVILSTCSRLGILELGKQVHSASVKL 447
Query: 223 ------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL 276
+V I + + CG V + +FN ++ RDVV WNS+IS +A D
Sbjct: 448 LLHNDMFVASGLIDMYSKCGQVGIAQIIFNMMTERDVVCWNSMISGLAIHSLNEEAFDFF 507
Query: 277 RDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGS----FVWNALIDMYGRC 325
+ + + P + S++ +C +L+++PQG L G +V ++LIDMY +C
Sbjct: 508 KQMRENGMFPTESSYASMINSCARLSSIPQGRQIHAQVLKDGYDQNVYVGSSLIDMYAKC 567
Query: 326 GAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G + +R F M KN+V+WN MI Y
Sbjct: 568 GNMDDARLFFNCMIVKNIVAWNEMIHGY 595
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/344 (22%), Positives = 147/344 (42%), Gaps = 56/344 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +++ Y +++ + LF M + V+PD + CS L +GK V+ +
Sbjct: 386 WNTLLSGYGQEELHQDTIELFRRMQHQNVQPDRTTLAVILSTCSRLGILELGKQVHSASV 445
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ D+F+ G LID Y+KC + ++
Sbjct: 446 KLLLHN---------DMFVASG---------------------LIDMYSKCGQVGIAQII 475
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+ + ++D+V WN+M++G A+ EE + +M + M P S + ++ +CA++
Sbjct: 476 FNMMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMR--ENGMFPTESSYASMINSCARLS 533
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ G+ IH VL+ I + CG + + FN + +++V WN +I
Sbjct: 534 SIPQGRQIHAQVLKDGYDQNVYVGSSLIDMYAKCGNMDDARLFFNCMIVKNIVAWNEMIH 593
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK----------LAALPQGLGTG 311
+ ++G A++L ++ KP++VT ++VL C ++ G
Sbjct: 594 GYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAIAYFNSMESNYGIR 653
Query: 312 SFV--WNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
V + LID GR G + + MP+K + + W V+++
Sbjct: 654 PLVEHYTCLIDALGRAGRFAEVVAVIDKMPYKDDAILWEVLLAA 697
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 114/246 (46%), Gaps = 34/246 (13%)
Query: 141 AKCRYLKVSHCK--FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT 198
A CR ++ + ++ ++ VSWN ++A A E + M+Q + P
Sbjct: 85 AACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSDSPGEALEMY--RGMLQEGLAPTN 142
Query: 199 ISLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQ 247
+L+ VL+AC V + G+ HG +V + + T CG V + +F+
Sbjct: 143 FTLASVLSACGAVAALDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDW 202
Query: 248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA---- 303
+S+ + V + +++ +SG V DAL L + + ++ + V + SVL AC + A
Sbjct: 203 MSSPNEVSFTAMMGGLAQSGAVDDALRLFARMSRSAIRVDPVAVSSVLGACAQACAGDYN 262
Query: 304 ---------------LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
+ +G + V N+LIDMY + + ++ K+F M ++VSWN+
Sbjct: 263 VARAIRLAQSIHALVVRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWNI 322
Query: 349 MISVYG 354
+++ YG
Sbjct: 323 LVTGYG 328
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/331 (21%), Positives = 131/331 (39%), Gaps = 58/331 (17%)
Query: 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL 107
E + ++ M+ +G+ P +F V AC + G+ + + + +GN
Sbjct: 125 EALEMYRGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGNQ------- 177
Query: 108 DLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAM 167
V N L+ Y KC + + F + + VS+ AM
Sbjct: 178 -----------------------FVENGLLGMYTKCGSVADAVRLFDWMSSPNEVSFTAM 214
Query: 168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ--------VKGVKLGKA 219
+ G A G ++ L M + P +++S VL ACAQ + ++L ++
Sbjct: 215 MGGLAQSGAVDDALRLFARMSRSAIRVDP--VAVSSVLGACAQACAGDYNVARAIRLAQS 272
Query: 220 IHGYVLRHHIHLSTACGFVIC-----------SCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH V+R G + + VF +S+ +V WN +++ + + G
Sbjct: 273 IHALVVRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWNILVTGYGQLGC 332
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-------TGSFVWNALIDM 321
AL++L + + +PN VT ++L +C+K +P WN L+
Sbjct: 333 YERALEVLDLMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKISKPSVTTWNTLLSG 392
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
YG+ Q + ++F M H+N+ ++V
Sbjct: 393 YGQEELHQDTIELFRRMQHQNVQPDRTTLAV 423
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 13/140 (9%)
Query: 224 VLRHHIHLSTAC--GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281
V ++ +S AC G + + + ++ R+ V WN++I+A RS +AL++ R ++
Sbjct: 76 VYSYNAAISAACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSDSPGEALEMYRGMLQ 135
Query: 282 ANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQK 330
+ P T+ SVL AC +AAL GL FV N L+ MY +CG++
Sbjct: 136 EGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVAD 195
Query: 331 SRKIFVLMPHKNLVSWNVMI 350
+ ++F M N VS+ M+
Sbjct: 196 AVRLFDWMSSPNEVSFTAMM 215
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 93/231 (40%), Gaps = 53/231 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+ELG QVH+ + + F+ S L++++ W SM+
Sbjct: 434 LELGKQVHSASVKLLLHNDMFVASGLIDMYSKCGQVGIAQIIFNMMTERDVVCWNSMISG 493
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ EE + F M + G+ P + +C+ L G+ ++ ++ +
Sbjct: 494 LAIHSLNEEAFDFFKQMRENGMFPTESSYASMINSCARLSSIPQGRQIHAQVLKDGY--- 550
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
DQ+ V +SLID YAKC + + F+ + K
Sbjct: 551 ---------------------------DQNVYVGSSLIDMYAKCGNMDDARLFFNCMIVK 583
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
++V+WN M+ GYA GF E+ L + M+ T +P++++ VL C+
Sbjct: 584 NIVAWNEMIHGYAQNGFGEKAVELFE--YMLTTKQKPDSVTFIAVLTGCSH 632
>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
Length = 644
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 165/347 (47%), Gaps = 29/347 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y G E +LF M +G+ D F + ACS + GK V+ ++
Sbjct: 178 SWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHL 237
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSH 150
+ + + L+D++ KCG + + F+ M V+ S++ AK + +
Sbjct: 238 LVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAAR 297
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F +I +K ++SWNAM++ Y GG E +L + M+++ + P+ +L+ VL+AC Q
Sbjct: 298 DWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLL--GLAPDEFTLAAVLSACGQ 355
Query: 211 VKGVKLGKAIHGYVLRHHIH------------LSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ + GK IH +R + H + CG V + S+F+++ +++V+ WN+
Sbjct: 356 LGDLASGKMIHD-CIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNA 414
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------- 307
II A G+ DAL R ++ P+ +T V++L AC L G
Sbjct: 415 IIGALAMHGRAQDALMFFRSMVFDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVY 474
Query: 308 -LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
+ G + ++D+ GR G + K+ + MP + ++V W ++
Sbjct: 475 NVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGA 521
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 99/424 (23%), Positives = 178/424 (41%), Gaps = 112/424 (26%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVN-------------- 51
Q+HAHL+V GV+ SQ+L +C + G++ ++ I +
Sbjct: 30 QLHAHLVVHGVDDVT---SQILASYCALPAGGGVWYARQLFDRIPDPDRFVYNSLIRAYC 86
Query: 52 ----------LFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
L MI +G+ P+ F P + KAC+ ++ + + ++ + F G
Sbjct: 87 NSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVGQV- 145
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
V N+L+ YA L S F ++ +++
Sbjct: 146 -----------------------------FVGNALLHSYASAGSLGDSRRFFDEMVDRNV 176
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSWN+M+ GYA G E +L + M + + + +L +L AC+ ++ GK +H
Sbjct: 177 VSWNSMINGYAQAGNTREACSLFEGMR--RQGLLADEFTLVSLLFACSAEGNLEFGKLVH 234
Query: 222 GYVL----RHHIHLSTA-------CGFVICS-------------------CSV------- 244
++L R + L+ A CG ++ + C++
Sbjct: 235 SHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASID 294
Query: 245 -----FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
F Q+ + ++ WN++IS +V+ G+ +ALDL + + + P+ T+ +VL AC
Sbjct: 295 AARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACG 354
Query: 300 KLAALPQGL-----------GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
+L L G G ++N+L+DMY RCG + + +F MP KN++SWN
Sbjct: 355 QLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNA 414
Query: 349 MISV 352
+I
Sbjct: 415 IIGA 418
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 66/131 (50%), Gaps = 11/131 (8%)
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
A G V + +F+++ D V+NS+I A+ S +AL LLR +I + PN T+
Sbjct: 56 AGGGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPF 115
Query: 294 VLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
+L AC ++ A G FV NAL+ Y G++ SR+ F M +N
Sbjct: 116 LLKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRN 175
Query: 343 LVSWNVMISVY 353
+VSWN MI+ Y
Sbjct: 176 VVSWNSMINGY 186
>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
Length = 855
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/370 (24%), Positives = 175/370 (47%), Gaps = 44/370 (11%)
Query: 27 LEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDK---GVRPDHFVCPKVYKACSELKDYRV 83
+E +W S++ Y G + + + M + +RPD + AC+ + +
Sbjct: 193 IEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQH 252
Query: 84 GKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAK 142
GK V+ + + + V L+ ++ KC +M + +FE + + +V+ N+++ Y++
Sbjct: 253 GKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQ 312
Query: 143 CRYLKVSHCKFSKIKQKDL----VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT 198
+ F ++++D+ ++W+A++AGYA G E ++ +M++ ++PN
Sbjct: 313 IGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLY--GLEPNV 370
Query: 199 ISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS------------------TACGFVIC 240
++L+ +L+ CA V + GK H YV+++ ++L+ C
Sbjct: 371 VTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRV 430
Query: 241 SCSVFNQLSTRD--VVVWNSIISAFVRSGQVVDALDLLRDVIV--ANVKPNTVTIVSVLP 296
+ S+F+ + +D VV W +I + + G+ DAL L + ++KPN T+ L
Sbjct: 431 ARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALM 490
Query: 297 ACLKLAALPQGLGTGSF------------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLV 344
AC +L L G ++ V N LIDMY + G I +R +F M +N+V
Sbjct: 491 ACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVV 550
Query: 345 SWNVMISVYG 354
SW +++ YG
Sbjct: 551 SWTSLMTGYG 560
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 98/392 (25%), Positives = 161/392 (41%), Gaps = 100/392 (25%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +++ LG ++ + + M G PDH+ P V KAC E+ R G V+
Sbjct: 95 WNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHA--- 151
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
I C + + + NS++ Y +C L +H
Sbjct: 152 ------------------IVCA---------NGLGSNVFICNSIVAMYGRCGALDDAHQM 184
Query: 153 FSKI---KQKDLVSWNAMLAGYALGGFREEVTNLLDEM-EMIQTDMQPNTISLSGVLAAC 208
F ++ K +D+VSWN++LA Y GG + M ++P+ I+L +L AC
Sbjct: 185 FDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPAC 244
Query: 209 AQVKGVKLGKAIHGYVLRH----HIHLSTACGFVICSCS-------VFNQLSTRDVVVWN 257
A V ++ GK +HG+ +R+ + + A + CS VF + +DVV WN
Sbjct: 245 ASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWN 304
Query: 258 -----------------------------------SIISAFVRSGQVVDALDLLRDVIVA 282
++I+ + + G +ALD+ R + +
Sbjct: 305 AMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLY 364
Query: 283 NVKPNTVTIVSVLPACLKLAALPQGLGTGSFV--------W----------NALIDMYGR 324
++PN VT+ S+L C + AL G T ++V W N LIDMY +
Sbjct: 365 GLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAK 424
Query: 325 CGAIQKSRKIF--VLMPHKNLVSWNVMISVYG 354
C + + +R IF + KN+V+W VMI Y
Sbjct: 425 CKSYRVARSIFDSIEGKDKNVVTWTVMIGGYA 456
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/412 (22%), Positives = 178/412 (43%), Gaps = 60/412 (14%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++ G QVH + G+ F+G+ L+ ++ +W +M+
Sbjct: 250 LQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTG 309
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y+ +G ++ ++LF +M ++ ++ D V ++ DV+ M E N
Sbjct: 310 YSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPN 369
Query: 100 ACVKRPLLDLFIKCGRM------------EITSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147
LL G + I + + + + D LV N LID YAKC+ +
Sbjct: 370 VVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYR 429
Query: 148 VSHCKFSKI--KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
V+ F I K K++V+W M+ GYA G + L ++ +T ++PN +LS L
Sbjct: 430 VARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCAL 489
Query: 206 AACAQVKGVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDV 253
ACA++ ++LG+ +H Y LR+ I + + G + + +VF+ + R+V
Sbjct: 490 MACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNV 549
Query: 254 VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL----- 308
V W S+++ + G+ +AL L + + +T + VL AC + QG+
Sbjct: 550 VSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHD 609
Query: 309 -------GTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
G+ + ++D+ GR G + ++ ++ M V W ++S
Sbjct: 610 MVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSA 661
>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 574
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 104/382 (27%), Positives = 164/382 (42%), Gaps = 77/382 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+E G Q+HA + G+ L ++L+ ++C W M+
Sbjct: 17 IEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKRNLFLWNVMIRG 76
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G YE ++L+Y M D G+ PD F P V KACS L GK ++ +I
Sbjct: 77 YAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIR------ 130
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
SGL + D V +LID YAKC ++ + F KI ++
Sbjct: 131 --------------------SGL----ESDVFVGAALIDMYAKCGCVESARQVFDKIDER 166
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+V WN+MLA Y+ G +E L M ++P + +AA A + GK
Sbjct: 167 DVVCWNSMLATYSQNGQPDESLALCRVMAF--NGLKPTEGTFVISIAASADNGLLPQGKE 224
Query: 220 IHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+HGY RH + G V + S+F L + VV WN++I+ + G
Sbjct: 225 LHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGH 284
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTGSFVW------N 316
+ALDL ++ + V P+ +T V VL AC L +G + + +W
Sbjct: 285 ANEALDLFKE-MKGKVLPDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYT 343
Query: 317 ALIDMYGRCGAIQKSRKIFVLM 338
+ID+ G CG ++++ K+ + M
Sbjct: 344 CMIDLLGHCGRLEEAYKLIMEM 365
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 120/246 (48%), Gaps = 24/246 (9%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
L+ L++ Y C L +H F +I +++L WN M+ GYA G E +L +M
Sbjct: 37 LLATKLVNLYCICNSLTNAHLLFDRISKRNLFLWNVMIRGYAWNGPYELAISLYYQMR-- 94
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVI 239
+ P+ + VL AC+ + ++ GK IH V+R I + CG V
Sbjct: 95 DYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVE 154
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ VF+++ RDVV WNS+++ + ++GQ ++L L R + +KP T V + A
Sbjct: 155 SARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASA 214
Query: 300 KLAALPQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
LPQG + W AL+DMY + G++ +R +F L+ K +VSWN
Sbjct: 215 DNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNA 274
Query: 349 MISVYG 354
MI+ Y
Sbjct: 275 MITGYA 280
>gi|357494773|ref|XP_003617675.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519010|gb|AET00634.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/345 (27%), Positives = 156/345 (45%), Gaps = 56/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ +Y G + V F+ M++ V PD V + D GK + +
Sbjct: 282 SWTSMIRVYARFGMMSDCVRFFWEMLENQVCPDGMVIGCILSGFGNSVDVYGGKAFHGLI 341
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + D +V+NSL+ Y K L +
Sbjct: 342 IRRHYA------------------------------PDEMVDNSLLSMYCKFGMLSFAER 371
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + Q + WN M+ GY G + L EM+ + ++ ++ + +A+C Q+
Sbjct: 372 LFQR-SQGSIEYWNFMIVGYGRIGKNVKCIQLFREMQYL--GIRSESVGIVSAIASCGQL 428
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ LG++IH V++ I + C + S +FN+ S RDV++WN++I
Sbjct: 429 GEINLGRSIHCNVIKGFVDETISVTNSLIEMYGKCDKMNVSWRIFNR-SERDVILWNALI 487
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTGSFV 314
SA + +A+ L +I+ + PNT T+V VL AC LA L +G + F
Sbjct: 488 SAHIHVKHYEEAISLFDIMIMEDQNPNTATLVVVLSACSHLAFLEKGERLHRYINEKGFK 547
Query: 315 WN-----ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
N AL+DMY +CG ++KSR++F M K+++ WN MIS YG
Sbjct: 548 LNLPLGTALVDMYAKCGQLEKSREVFDSMMEKDVICWNAMISGYG 592
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 152/329 (46%), Gaps = 55/329 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W M+ Y +G + + LF M G+R + +C +L + +G+ ++
Sbjct: 383 WNFMIVGYGRIGKNVKCIQLFREMQYLGIRSESVGIVSAIASCGQLGEINLGRSIH---- 438
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ G +D+ V NSLI+ Y KC + VS
Sbjct: 439 -----------------------CNVIKGF---VDETISVTNSLIEMYGKCDKMNVSWRI 472
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F++ ++D++ WNA+++ + EE +L D M I D PNT +L VL+AC+ +
Sbjct: 473 FNR-SERDVILWNALISAHIHVKHYEEAISLFDIM--IMEDQNPNTATLVVVLSACSHLA 529
Query: 213 GVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ G+ +H Y+ + ++ L TA CG + S VF+ + +DV+ WN++IS
Sbjct: 530 FLEKGERLHRYINEKGFKLNLPLGTALVDMYAKCGQLEKSREVFDSMMEKDVICWNAMIS 589
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------- 314
+ +G A+++ + +NVKPN +T +S+L AC + +G + +
Sbjct: 590 GYGMNGYAESAIEIFNLMEESNVKPNEITFLSLLSACAHAGLVEEGKNVFAKMQSYSVKP 649
Query: 315 ----WNALIDMYGRCGAIQKSRKIFVLMP 339
+ ++D+ GR ++++ ++ + MP
Sbjct: 650 NLKHYTCMVDLLGRSCNLEEAEELVLSMP 678
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 114/243 (46%), Gaps = 24/243 (9%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
+ +S++ Y KC + ++ FS++ KDL+SW +M+ YA G + EM++
Sbjct: 251 IQSSVLSMYCKCGVPREAYQSFSEVINKDLLSWTSMIRVYARFGMMSDCVRFF--WEMLE 308
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH---------LSTACGFVICS- 241
+ P+ + + +L+ V GKA HG ++R H LS C F + S
Sbjct: 309 NQVCPDGMVIGCILSGFGNSVDVYGGKAFHGLIIRRHYAPDEMVDNSLLSMYCKFGMLSF 368
Query: 242 CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
Q S + WN +I + R G+ V + L R++ ++ +V IVS + +C +L
Sbjct: 369 AERLFQRSQGSIEYWNFMIVGYGRIGKNVKCIQLFREMQYLGIRSESVGIVSAIASCGQL 428
Query: 302 AALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ G + V N+LI+MYG+C + S +IF ++++ WN +I
Sbjct: 429 GEINLGRSIHCNVIKGFVDETISVTNSLIEMYGKCDKMNVSWRIFN-RSERDVILWNALI 487
Query: 351 SVY 353
S +
Sbjct: 488 SAH 490
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/345 (21%), Positives = 140/345 (40%), Gaps = 53/345 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S + Y + ++ + LM + V P+HF P V + + R G +++
Sbjct: 77 WNSFLKTLFSRSLYPQFLSFYSLMRSENVLPNHFTFPMVASSYAHFMMIRSGMNLHALAC 136
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ G F E + V +S + Y++C + +
Sbjct: 137 KV--------------------------GFFPE---NSAVGSSFVSLYSRCDEMNDAVKV 167
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ-PNTISLSGVLAACAQV 211
F +I +D+V+W A++ GY G E + EM + D Q PN +L G AC +
Sbjct: 168 FDEIPVRDVVAWTALVIGYVQNGESEMGLECISEMYRVGDDSQKPNARTLEGGFLACGNL 227
Query: 212 KGVKLGKAIHGYVLRHHI----HLSTACGFVICSCSV-------FNQLSTRDVVVWNSII 260
+ G+ +HG V+++ I + ++ + C C V F+++ +D++ W S+I
Sbjct: 228 GDLVSGRCLHGLVVKNGIGCLLDIQSSVLSMYCKCGVPREAYQSFSEVINKDLLSWTSMI 287
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA-----------CLKLAALPQGLG 309
+ R G + D + +++ V P+ + I +L + +
Sbjct: 288 RVYARFGMMSDCVRFFWEMLENQVCPDGMVIGCILSGFGNSVDVYGGKAFHGLIIRRHYA 347
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V N+L+ MY + G + + ++F ++ WN MI YG
Sbjct: 348 PDEMVDNSLLSMYCKFGMLSFAERLF-QRSQGSIEYWNFMIVGYG 391
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 18/155 (11%)
Query: 214 VKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISA-FVRS--GQVV 270
V G + + ++ I L S ++F+ L +D +WNS + F RS Q +
Sbjct: 35 VTTGNSTNPFIAAKLISLYDTLNHPTSSSTLFHSLPFKDTFLWNSFLKTLFSRSLYPQFL 94
Query: 271 DALDLLRDVIVANVKPNTVTIVSV---------LPACLKLAALPQGLG---TGSFVWNAL 318
L+R NV PN T V + + + L AL +G S V ++
Sbjct: 95 SFYSLMRS---ENVLPNHFTFPMVASSYAHFMMIRSGMNLHALACKVGFFPENSAVGSSF 151
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ +Y RC + + K+F +P +++V+W ++ Y
Sbjct: 152 VSLYSRCDEMNDAVKVFDEIPVRDVVAWTALVIGY 186
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 21/138 (15%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+E G ++H ++ G +L LG+ L++++ W +M+
Sbjct: 531 LEKGERLHRYINEKGFKLNLPLGTALVDMYAKCGQLEKSREVFDSMMEKDVICWNAMISG 590
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y + GY E + +F LM + V+P+ + AC+ GK+V+ M S + N
Sbjct: 591 YGMNGYAESAIEIFNLMEESNVKPNEITFLSLLSACAHAGLVEEGKNVFAKMQSYSVKPN 650
Query: 100 ACVKRPLLDLFIKCGRME 117
++DL + +E
Sbjct: 651 LKHYTCMVDLLGRSCNLE 668
>gi|414864687|tpg|DAA43244.1| TPA: hypothetical protein ZEAMMB73_488594 [Zea mays]
Length = 658
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 132/251 (52%), Gaps = 26/251 (10%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
++QD V SL+D Y KC + + F+ + + +V+WN ++ GYAL E + D
Sbjct: 255 LEQDVKVGTSLVDMYCKCGNVLYAENVFATMLLRTVVTWNCLIGGYAL---NERPVDAFD 311
Query: 186 -EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----IHLSTA------ 234
M+M Q ++ +LAAC Q + G+++H YV+R H + L TA
Sbjct: 312 CFMQMRAEGFQVEAVTAINLLAACGQTESSLYGRSVHAYVVRRHFLPHVVLETALLEMYG 371
Query: 235 -CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
G V S +F Q++ + VV WN++I+A++ +A+ L +++ + P+ T+ +
Sbjct: 372 NVGKVESSEKIFGQMTEKTVVTWNNMIAAYIYMEMYQEAIALFLELLNQPLYPDYFTMTT 431
Query: 294 VLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
V+PA + L +L Q G G + + NA++ MY RCG I SR+IF MP K+
Sbjct: 432 VVPAFVLLGSLRQCRQMHSYIIKLGYGDSTLIMNAVMHMYARCGDIVASREIFDKMPGKD 491
Query: 343 LVSWNVMISVY 353
++SWN +I Y
Sbjct: 492 VISWNTIIIGY 502
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 130/323 (40%), Gaps = 53/323 (16%)
Query: 53 FYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIK 112
+ M+ RPD F P V K C+ G+ + +I +
Sbjct: 110 YRAMLAASARPDRFTFPVVVKCCTRAGALGEGRAAHAAVIKLG----------------- 152
Query: 113 CGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYA 172
+ D NSL+ YAK + + F + +D+VSWN M+ GY
Sbjct: 153 -------------LGADMYTANSLVALYAKLGLVGDAERVFDGMPARDIVSWNTMVDGYV 199
Query: 173 LGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-- 230
G +M ++ + + + LAAC + G+ IHGY +RH +
Sbjct: 200 SNGMGALALACFRDMN-DALRVRHDGVGVIAALAACCLESALAQGREIHGYAIRHGLEQD 258
Query: 231 ---------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281
+ CG V+ + +VF + R VV WN +I + + + VDA D +
Sbjct: 259 VKVGTSLVDMYCKCGNVLYAENVFATMLLRTVVTWNCLIGGYALNERPVDAFDCFMQMRA 318
Query: 282 ANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNALIDMYGRCGAIQK 330
+ VT +++L AC + + G ++V AL++MYG G ++
Sbjct: 319 EGFQVEAVTAINLLAACGQTESSLYGRSVHAYVVRRHFLPHVVLETALLEMYGNVGKVES 378
Query: 331 SRKIFVLMPHKNLVSWNVMISVY 353
S KIF M K +V+WN MI+ Y
Sbjct: 379 SEKIFGQMTEKTVVTWNNMIAAY 401
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/327 (20%), Positives = 140/327 (42%), Gaps = 64/327 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G ++H + I G+E +G+ L++++C W ++G Y +
Sbjct: 243 GREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVLYAENVFATMLLRTVVTWNCLIGGYAL 302
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+ + F M +G + + + AC + + G+ V+ Y++ F + +
Sbjct: 303 NERPVDAFDCFMQMRAEGFQVEAVTAINLLAACGQTESSLYGRSVHAYVVRRHFLPHVVL 362
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+ LL+++ G++E + +F +M +K +V
Sbjct: 363 ETALLEMYGNVGKVESSEKIFGQM------------------------------TEKTVV 392
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA---------CAQVKG 213
+WN M+A Y +E L +E++ + P+ +++ V+ A C Q+
Sbjct: 393 TWNNMIAAYIYMEMYQEAIALF--LELLNQPLYPDYFTMTTVVPAFVLLGSLRQCRQMHS 450
Query: 214 --VKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+KLG ++ +H+ CG ++ S +F+++ +DV+ WN+II + GQ
Sbjct: 451 YIIKLGYGDSTLIMNAVMHMYARCGDIVASREIFDKMPGKDVISWNTIIIGYAIHGQGKT 510
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPAC 298
AL++ ++ ++PN T VSVL AC
Sbjct: 511 ALEMFDEMKCNGIEPNESTFVSVLTAC 537
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 25/224 (11%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+ + N M+ G+A G + L M+ +P+ + V+ C +
Sbjct: 79 FAGVSSPGAFLHNVMIRGFADAGL--PLDALAAYRAMLAASARPDRFTFPVVVKCCTRAG 136
Query: 213 GVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ G+A H V++ + L G V + VF+ + RD+V WN+++
Sbjct: 137 ALGEGRAAHAAVIKLGLGADMYTANSLVALYAKLGLVGDAERVFDGMPARDIVSWNTMVD 196
Query: 262 AFVRSGQVVDALDLLRDVIVA-NVKPNTVTIVSVLPACLKLAALPQGLGTGSF------- 313
+V +G AL RD+ A V+ + V +++ L AC +AL QG +
Sbjct: 197 GYVSNGMGALALACFRDMNDALRVRHDGVGVIAALAACCLESALAQGREIHGYAIRHGLE 256
Query: 314 ----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V +L+DMY +CG + + +F M + +V+WN +I Y
Sbjct: 257 QDVKVGTSLVDMYCKCGNVLYAENVFATMLLRTVVTWNCLIGGY 300
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 11/131 (8%)
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
A G + + F +S+ + N +I F +G +DAL R ++ A+ +P+ T
Sbjct: 68 AAGRMDEAADAFAGVSSPGAFLHNVMIRGFADAGLPLDALAAYRAMLAASARPDRFTFPV 127
Query: 294 VLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
V+ C + AL +G LG + N+L+ +Y + G + + ++F MP ++
Sbjct: 128 VVKCCTRAGALGEGRAAHAAVIKLGLGADMYTANSLVALYAKLGLVGDAERVFDGMPARD 187
Query: 343 LVSWNVMISVY 353
+VSWN M+ Y
Sbjct: 188 IVSWNTMVDGY 198
>gi|147834193|emb|CAN75306.1| hypothetical protein VITISV_040403 [Vitis vinifera]
Length = 826
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 155/344 (45%), Gaps = 54/344 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W++M+ G Y E +F M GV P+H + AC+ + GK+++ + I
Sbjct: 157 WSAMVSACVKSGQYGEAFEIFRAMQYDGVEPNHVSIVSILPACANVGALLFGKEIHGFSI 216
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F PL + V+NSL+D YAKCR K S
Sbjct: 217 KKMF-------HPLTN-----------------------VHNSLVDMYAKCRNFKASMLV 246
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F +I +KDL+SW ++ G E M+ + + + ++ A Q
Sbjct: 247 FDQILEKDLISWTTIIRGCIENDCPREAFKAFSRMQF--SCFGADETIVQDLIVAIIQAD 304
Query: 213 GVKLGKAIHGYVLRH----HIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNSIIS 261
K G A HG++L++ + + TA G + + VF+QL+ +D + W+++IS
Sbjct: 305 EHKFGIAFHGFLLKNGLLAFVSIGTALLQMYAKFGELESAIIVFDQLNKKDYISWSAMIS 364
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQGLGT 310
S +AL+ + + + +PN +T VS+L AC ++ A G +
Sbjct: 365 VHAHSRHPYNALETFKQMQSTDERPNEITFVSLLQACSLIGAQELGESIQAHATKAGYLS 424
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+F+ +ALID+Y + G I + R IF +P K+LV W+ MI+ YG
Sbjct: 425 NAFLSSALIDLYCKFGRINQGRAIFNEIPTKDLVCWSSMINGYG 468
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 127/254 (50%), Gaps = 27/254 (10%)
Query: 122 LFEEMDQ-DFLVNNSLIDFYAKCRYLKVSHCKFS---KIKQKDLVSWNAMLAGYALGGFR 177
+FEE+ Q + + NS Y + + ++ + ++ +++SW + ++
Sbjct: 11 VFEEITQRNVFIRNSAYSLYYRSMFNTYAYYEEPVEFHGEKDNVISWTSKISSLVKQNQS 70
Query: 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLST 233
E L M M T+ +PN +++ V+ A + + + + I G V++ + ++T
Sbjct: 71 ELAVGLFKMMLM--TEQRPNHVTVLSVIRAISGLGLEDMMRVICGSVIKLGFESEVSVAT 128
Query: 234 A-CGF-----VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
A GF + +FNQ +D+V+W++++SA V+SGQ +A ++ R + V+PN
Sbjct: 129 ALIGFYSDYDMGIVWKIFNQTPIKDLVLWSAMVSACVKSGQYGEAFEIFRAMQYDGVEPN 188
Query: 288 TVTIVSVLPACLKLAALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFV 336
V+IVS+LPAC + AL G F V N+L+DMY +C + S +F
Sbjct: 189 HVSIVSILPACANVGALLFGKEIHGFSIKKMFHPLTNVHNSLVDMYAKCRNFKASMLVFD 248
Query: 337 LMPHKNLVSWNVMI 350
+ K+L+SW +I
Sbjct: 249 QILEKDLISWTTII 262
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 27/220 (12%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
+ +L+ YAK L+ + F ++ +KD +SW+AM++ +A R L +M
Sbjct: 327 IGTALLQMYAKFGELESAIIVFDQLNKKDYISWSAMISVHAHS--RHPYNALETFKQMQS 384
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTA-----CGF--VIC 240
TD +PN I+ +L AC+ + +LG++I + + + LS+A C F +
Sbjct: 385 TDERPNEITFVSLLQACSLIGAQELGESIQAHATKAGYLSNAFLSSALIDLYCKFGRINQ 444
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
++FN++ T+D+V W+S+I+ + +G +AL+ +++ VKPN V +SVL AC
Sbjct: 445 GRAIFNEIPTKDLVCWSSMINGYGLNGCGDEALETFSNMLACGVKPNEVVFISVLSACSH 504
Query: 301 LAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340
+G W+ M + G I K +PH
Sbjct: 505 CGLEHEG-------WSCFSSMEQKYGIIPK-------LPH 530
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/230 (20%), Positives = 87/230 (37%), Gaps = 53/230 (23%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
+ GI H L+ G+ +G+ LL+++ +W++M+ ++
Sbjct: 307 KFGIAFHGFLLKNGLLAFVSIGTALLQMYAKFGELESAIIVFDQLNKKDYISWSAMISVH 366
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+ + F M RP+ + +ACS + +G+ + + + NA
Sbjct: 367 AHSRHPYNALETFKQMQSTDERPNEITFVSLLQACSLIGAQELGESIQAHATKAGYLSNA 426
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
+ L+DL+ K GR+ +F E I KD
Sbjct: 427 FLSSALIDLYCKFGRINQGRAIFNE------------------------------IPTKD 456
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
LV W++M+ GY L G +E M+ ++PN + VL+AC+
Sbjct: 457 LVCWSSMINGYGLNGCGDEALETFS--NMLACGVKPNEVVFISVLSACSH 504
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 16/114 (14%)
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL---------- 301
+V+ W S IS+ V+ Q A+ L + +++ +PN VT++SV+ A L
Sbjct: 53 NVISWTSKISSLVKQNQSELAVGLFKMMLMTEQRPNHVTVLSVIRAISGLGLEDMMRVIC 112
Query: 302 -AALPQGLGTGSFVWNALIDMYGR--CGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+ + G + V ALI Y G + K IF P K+LV W+ M+S
Sbjct: 113 GSVIKLGFESEVSVATALIGFYSDYDMGIVWK---IFNQTPIKDLVLWSAMVSA 163
>gi|302786722|ref|XP_002975132.1| hypothetical protein SELMODRAFT_102729 [Selaginella moellendorffii]
gi|300157291|gb|EFJ23917.1| hypothetical protein SELMODRAFT_102729 [Selaginella moellendorffii]
Length = 404
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 148/325 (45%), Gaps = 31/325 (9%)
Query: 56 MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR 115
M +G+ P+ + A S + G+ ++ ++ + G V L+D++ KCG
Sbjct: 1 MHGEGLAPNKVTFLAILSAVSGARGLEEGRKIHTQVVESGYSGELSVGNALIDMYSKCGS 60
Query: 116 MEITSGLFEEMDQD---FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYA 172
+E F MD+ + N+++ Y KC + + F K++++D VSW M+A YA
Sbjct: 61 LEDARKTFAGMDEKNGLVSIGNAIVHMYGKCGNVADARKMFDKMRERDTVSWTTMIAVYA 120
Query: 173 LGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-- 230
G+ E + M + + P+ ++L VL AC+ V G+ G+ ++ + H
Sbjct: 121 EHGYDREALQIFKVM--LLESVAPDKVTLINVLDACSNVSGLAQGRLVYKQFVESGAHEL 178
Query: 231 ---LSTACGFVICSC-------SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280
L A + SC +F L+ RDVV WN +I+A+ + G ++L L R ++
Sbjct: 179 DLVLGNAVARMFGSCGSLREAREIFESLAARDVVSWNCLITAYAQHGSFEESLRLFRRML 238
Query: 281 VANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNALIDMYGRCGAI 328
VKP+ VT V VL AC + G + + ++D+ GR G +
Sbjct: 239 EECVKPDEVTFVGVLSACSHGGLVADGCQFFVSMVQDYQIPAEEIHYGCMVDLLGRAGRL 298
Query: 329 QKSRKIFVLMP--HKNLVSWNVMIS 351
++ ++ +P N V W ++S
Sbjct: 299 AEAEELLSRLPCAAANDVMWTSLLS 323
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 82/137 (59%), Gaps = 12/137 (8%)
Query: 229 IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288
+H+ CG V + +F+++ RD V W ++I+ + G +AL + + +++ +V P+
Sbjct: 85 VHMYGKCGNVADARKMFDKMRERDTVSWTTMIAVYAEHGYDREALQIFKVMLLESVAPDK 144
Query: 289 VTIVSVLPACLKLAALPQG-------LGTGSF-----VWNALIDMYGRCGAIQKSRKIFV 336
VT+++VL AC ++ L QG + +G+ + NA+ M+G CG+++++R+IF
Sbjct: 145 VTLINVLDACSNVSGLAQGRLVYKQFVESGAHELDLVLGNAVARMFGSCGSLREAREIFE 204
Query: 337 LMPHKNLVSWNVMISVY 353
+ +++VSWN +I+ Y
Sbjct: 205 SLAARDVVSWNCLITAY 221
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 119/276 (43%), Gaps = 52/276 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ +Y GY E + +F +M+ + V PD V ACS + G+ VY
Sbjct: 111 SWTTMIAVYAEHGYDREALQIFKVMLLESVAPDKVTLINVLDACSNVSGLAQGRLVYKQ- 169
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F++ G E+ D ++ N++ + C L+ +
Sbjct: 170 ------------------FVESGAHEL----------DLVLGNAVARMFGSCGSLREARE 201
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +D+VSWN ++ YA G EE L M++ ++P+ ++ GVL+AC+
Sbjct: 202 IFESLAARDVVSWNCLITAYAQHGSFEESLRLF--RRMLEECVKPDEVTFVGVLSACS-- 257
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
HG + ++ C F + + Q+ + + + ++ R+G++ +
Sbjct: 258 ---------HGGL------VADGCQFFVSMVQDY-QIPAEE-IHYGCMVDLLGRAGRLAE 300
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
A +LL + A N V S+L +C + L +G
Sbjct: 301 AEELLSRLPCA--AANDVMWTSLLSSCKLHSDLDRG 334
>gi|242037017|ref|XP_002465903.1| hypothetical protein SORBIDRAFT_01g047870 [Sorghum bicolor]
gi|241919757|gb|EER92901.1| hypothetical protein SORBIDRAFT_01g047870 [Sorghum bicolor]
Length = 656
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 133/251 (52%), Gaps = 26/251 (10%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
++QD V SL+D Y KC + + F+K+ + +V+WN M+ GYAL E + D
Sbjct: 253 LEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGGYAL---NERPVDAFD 309
Query: 186 -EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----IHLSTA------ 234
M+M Q ++ +L ACAQ + G+++H YV+R H + L TA
Sbjct: 310 CFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLPHVVLETALLEMYG 369
Query: 235 -CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
G V S +F Q++ + +V WN++I+A++ +A+ L +++ + P+ T+ +
Sbjct: 370 KVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIALFLELLNQPLYPDYFTMTT 429
Query: 294 VLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
V+PA + L ++ Q G G + + NA++ MY RCG I SR+IF MP K+
Sbjct: 430 VVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMNAVMHMYARCGNIVASREIFDKMPGKD 489
Query: 343 LVSWNVMISVY 353
++SWN +I Y
Sbjct: 490 VISWNTIIIGY 500
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/324 (26%), Positives = 137/324 (42%), Gaps = 55/324 (16%)
Query: 53 FYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIK 112
+ M+D G RPD F P V K C+ G+ + +I +
Sbjct: 108 YRAMLDAGARPDRFTFPVVLKCCARAGALGEGRAAHAAVIKLG----------------- 150
Query: 113 CGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYA 172
+ D NSL+ YAK + + F + +D+VSWN M+ GY
Sbjct: 151 -------------LGADVYTANSLVALYAKLGLVGDAERVFDGMPARDIVSWNTMVDGYV 197
Query: 173 LGGFREEVTNLLDEM-EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH- 230
G EM + +Q +++ + LAAC + LG+ IHGY +RH +
Sbjct: 198 SNGMGALALACFREMNDALQVGH--DSVGVIAALAACCLESALALGREIHGYAIRHGLEQ 255
Query: 231 ----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280
+ CG V + +VF ++ R VV WN +I + + + VDA D +
Sbjct: 256 DVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGGYALNERPVDAFDCFMQMR 315
Query: 281 VANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNALIDMYGRCGAIQ 329
V + VT +++L AC + + G ++V AL++MYG+ G ++
Sbjct: 316 VDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLPHVVLETALLEMYGKVGKVE 375
Query: 330 KSRKIFVLMPHKNLVSWNVMISVY 353
S KIF + K LVSWN MI+ Y
Sbjct: 376 SSEKIFGQITDKTLVSWNNMIAAY 399
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/330 (21%), Positives = 144/330 (43%), Gaps = 64/330 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ LG ++H + I G+E +G+ L++++C W M+G
Sbjct: 238 LALGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGG 297
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y + + + F M G + + + AC++ + G+ V+ Y++ F +
Sbjct: 298 YALNERPVDAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLPH 357
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
++ LL+++ K G++E + +F +I K
Sbjct: 358 VVLETALLEMYGKVGKVESSEKIF------------------------------GQITDK 387
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
LVSWN M+A Y +E L +E++ + P+ +++ V+ A + ++ K
Sbjct: 388 TLVSWNNMIAAYMYMEMYQEAIALF--LELLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQ 445
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H Y+++ +H+ CG ++ S +F+++ +DV+ WN+II + GQ
Sbjct: 446 MHSYIVKLGYGDSTLIMNAVMHMYARCGNIVASREIFDKMPGKDVISWNTIIIGYAIHGQ 505
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
AL++ ++ + ++PN T VSVL AC
Sbjct: 506 GKIALEMFDEMKCSGMEPNESTFVSVLTAC 535
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 25/224 (11%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+ + + N M+ G+A + L M+ +P+ + VL CA+
Sbjct: 77 FAGVTRPGAFLHNVMIRGFADADL--PLDALAAYRAMLDAGARPDRFTFPVVLKCCARAG 134
Query: 213 GVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ G+A H V++ + L G V + VF+ + RD+V WN+++
Sbjct: 135 ALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVFDGMPARDIVSWNTMVD 194
Query: 262 AFVRSGQVVDALDLLRDVIVA-NVKPNTVTIVSVLPACLKLAALP-----------QGLG 309
+V +G AL R++ A V ++V +++ L AC +AL GL
Sbjct: 195 GYVSNGMGALALACFREMNDALQVGHDSVGVIAALAACCLESALALGREIHGYAIRHGLE 254
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V +L+DMY +CG + + +F MP + +V+WN MI Y
Sbjct: 255 QDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGGY 298
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 81/182 (44%), Gaps = 32/182 (17%)
Query: 28 EVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDV 87
+ +W +M+ Y + Y+E + LF ++++ + PD+F V A L R K +
Sbjct: 387 KTLVSWNNMIAAYMYMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQM 446
Query: 88 YDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147
+ Y++ + + L+ N+++ YA+C +
Sbjct: 447 HSYIVKLGY------------------------------GDSTLIMNAVMHMYARCGNIV 476
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
S F K+ KD++SWN ++ GYA+ G + + DEM+ + M+PN + VL A
Sbjct: 477 ASREIFDKMPGKDVISWNTIIIGYAIHGQGKIALEMFDEMKC--SGMEPNESTFVSVLTA 534
Query: 208 CA 209
C+
Sbjct: 535 CS 536
>gi|357467901|ref|XP_003604235.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505290|gb|AES86432.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 688
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 164/343 (47%), Gaps = 53/343 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ ++ E++ M+++G+ P+ + V E+ R+G++V+ +++
Sbjct: 288 WGTMLSGFSHNRLQREVLEYVKWMVEEGIYPNSVIMTIVLPVIGEVCKRRLGQEVHAFVL 347
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
K + K P V ++LID Y KC L +
Sbjct: 348 KTK---SYAEKVP--------------------------VQSALIDMYCKCGDLSSARAV 378
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++++V W A+++GYA G E+ + M+ Q +P+ ++++ VL CAQ++
Sbjct: 379 FYSSPERNVVCWTALMSGYASVGRLEQALRAVIWMQ--QEGFRPDVVTVATVLPICAQLR 436
Query: 213 GVKLGKAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ GK IH Y L+H ++ LS++ CG V S +F + R+V+ W ++I
Sbjct: 437 ALEQGKQIHAYALKHWFLPNVSLSSSLVVMYSKCGVVEYSTRLFGDMEQRNVISWTAMID 496
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGT 310
+++ +G + +AL ++R + ++ +P++V + +L C +L L G +
Sbjct: 497 SYIENGHLYEALGVIRSMQLSKHRPDSVAMSRMLSVCGELKLLKHGKEIHGQILKRDFTS 556
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
FV LI+MYG G + K+ +F +P K ++W +I Y
Sbjct: 557 VHFVSAELINMYGALGDVDKANLVFSAVPVKGSMTWTALIRAY 599
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/402 (22%), Positives = 181/402 (45%), Gaps = 79/402 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN----------------------WTSMMG 38
+ +G Q+H H+ + G+E FL ++L++++ + W +++
Sbjct: 127 LSIGKQIHTHIRINGLEKNTFLLTKLVQMYTSCGSLEDALKLFDELPDESSVYPWNALLR 186
Query: 39 MYNVLG----YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI 94
V G Y ++V + M + GV + + V K+ + + G + +I
Sbjct: 187 GTVVFGGRKKQYIDVVKTYSKMRELGVELNVYSFSSVIKSFAAAPAFYQGLKTHALLIKN 246
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFS 154
+ ++ L+DL+ KCG++++ +FEE+ +
Sbjct: 247 GLVDSDILRTCLIDLYFKCGKVKLARRVFEEIPE-------------------------- 280
Query: 155 KIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGV 214
+++D+V W ML+G++ + EV + M++ + PN++ ++ VL +V
Sbjct: 281 --RERDVVVWGTMLSGFSHNRLQREVLEYVK--WMVEEGIYPNSVIMTIVLPVIGEVCKR 336
Query: 215 KLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISA 262
+LG+ +H +VL+ I + CG + + +VF R+VV W +++S
Sbjct: 337 RLGQEVHAFVLKTKSYAEKVPVQSALIDMYCKCGDLSSARAVFYSSPERNVVCWTALMSG 396
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV---W---- 315
+ G++ AL + + +P+ VT+ +VLP C +L AL QG ++ W
Sbjct: 397 YASVGRLEQALRAVIWMQQEGFRPDVVTVATVLPICAQLRALEQGKQIHAYALKHWFLPN 456
Query: 316 ----NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
++L+ MY +CG ++ S ++F M +N++SW MI Y
Sbjct: 457 VSLSSSLVVMYSKCGVVEYSTRLFGDMEQRNVISWTAMIDSY 498
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/330 (23%), Positives = 136/330 (41%), Gaps = 68/330 (20%)
Query: 21 FLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD 80
F S V C WT++M Y +G E+ + M +G RPD V C++L+
Sbjct: 379 FYSSPERNVVC-WTALMSGYASVGRLEQALRAVIWMQQEGFRPDVVTVATVLPICAQLRA 437
Query: 81 YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFY 140
GK ++ Y + F N + L+ ++ KCG +E ++ L
Sbjct: 438 LEQGKQIHAYALKHWFLPNVSLSSSLVVMYSKCGVVEYSTRL------------------ 479
Query: 141 AKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTIS 200
F ++Q++++SW AM+ Y G E ++ M++ + +P++++
Sbjct: 480 ------------FGDMEQRNVISWTAMIDSYIENGHLYEALGVIRSMQL--SKHRPDSVA 525
Query: 201 LSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLS 249
+S +L+ C ++K +K GK IHG +L+ I++ A G V + VF+ +
Sbjct: 526 MSRMLSVCGELKLLKHGKEIHGQILKRDFTSVHFVSAELINMYGALGDVDKANLVFSAVP 585
Query: 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG 309
+ + W ++I A+ + A+DL + PN T +L C
Sbjct: 586 VKGSMTWTALIRAYEYNELYQGAIDLFDQMRSDRFSPNPFTFEVILSVC----------- 634
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
R G + + KIF LMP
Sbjct: 635 -------------ERAGFVNDASKIFNLMP 651
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 131/308 (42%), Gaps = 56/308 (18%)
Query: 74 ACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN 133
AC +GK ++ ++ E N + L+ ++ CG +E LF+E+ +
Sbjct: 120 ACIRTNSLSIGKQIHTHIRINGLEKNTFLLTKLVQMYTSCGSLEDALKLFDELPDE---- 175
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYAL-GGFREEVTNLLDEM-EMIQ 191
+ WNA+L G + GG +++ +++ +M +
Sbjct: 176 -------------------------SSVYPWNALLRGTVVFGGRKKQYIDVVKTYSKMRE 210
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVIC 240
++ N S S V+ + A G H ++++ I L CG V
Sbjct: 211 LGVELNVYSFSSVIKSFAAAPAFYQGLKTHALLIKNGLVDSDILRTCLIDLYFKCGKVKL 270
Query: 241 SCSVFNQLSTR--DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ VF ++ R DVVVW +++S F + + L+ ++ ++ + PN+V + VLP
Sbjct: 271 ARRVFEEIPERERDVVVWGTMLSGFSHNRLQREVLEYVKWMVEEGIYPNSVIMTIVLPVI 330
Query: 299 LKLAALPQG-------LGTGSF-----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
++ G L T S+ V +ALIDMY +CG + +R +F P +N+V W
Sbjct: 331 GEVCKRRLGQEVHAFVLKTKSYAEKVPVQSALIDMYCKCGDLSSARAVFYSSPERNVVCW 390
Query: 347 NVMISVYG 354
++S Y
Sbjct: 391 TALMSGYA 398
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 100/225 (44%), Gaps = 31/225 (13%)
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
+ K+ +S + +A E +LD ++ Q + N + S ++AAC + +
Sbjct: 71 LHNKNPISIYKDIKNFARQNKLNEALAILDYVD--QNGIPVNATTFSSLIAACIRTNSLS 128
Query: 216 LGKAIHGYV-----------LRHHIHLSTACGFVICSCSVFNQLSTR-DVVVWNSIISAF 263
+GK IH ++ L + + T+CG + + +F++L V WN+++
Sbjct: 129 IGKQIHTHIRINGLEKNTFLLTKLVQMYTSCGSLEDALKLFDELPDESSVYPWNALLRGT 188
Query: 264 V----RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------ 313
V R Q +D + + V+ N + SV+ + A QGL T +
Sbjct: 189 VVFGGRKKQYIDVVKTYSKMRELGVELNVYSFSSVIKSFAAAPAFYQGLKTHALLIKNGL 248
Query: 314 -----VWNALIDMYGRCGAIQKSRKIFVLMP--HKNLVSWNVMIS 351
+ LID+Y +CG ++ +R++F +P +++V W M+S
Sbjct: 249 VDSDILRTCLIDLYFKCGKVKLARRVFEEIPERERDVVVWGTMLS 293
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 40/201 (19%), Positives = 76/201 (37%), Gaps = 32/201 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ Y G+ E + + M RPD ++ C ELK + GK+++ +
Sbjct: 490 SWTAMIDSYIENGHLYEALGVIRSMQLSKHRPDSVAMSRMLSVCGELKLLKHGKEIHGQI 549
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F V L++++ G ++D+ LV
Sbjct: 550 LKRDFTSVHFVSAELINMY----------GALGDVDKANLV------------------- 580
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS + K ++W A++ Y + +L D+M PN + +L+ C +
Sbjct: 581 -FSAVPVKGSMTWTALIRAYEYNELYQGAIDLFDQMR--SDRFSPNPFTFEVILSVCERA 637
Query: 212 KGVKLGKAIHGYVLRHHIHLS 232
V I + ++ I S
Sbjct: 638 GFVNDASKIFNLMPKYKIEAS 658
>gi|345505206|gb|AEN99827.1| chlororespiratory reduction 4, partial [Aethionema grandiflorum]
Length = 594
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 182/356 (51%), Gaps = 30/356 (8%)
Query: 18 LCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSE 77
LC+F + + + W +++ Y+ + LF LMI+ GV D F V KACS
Sbjct: 55 LCSFSAGEGEDPYL-WNAVIKSYSHGIDPRRALLLFCLMIENGVCVDKFSLSLVLKACSR 113
Query: 78 LKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSL 136
L+ + G ++ ++ + ++ L+ L++KCG + +F+ M Q D + NS+
Sbjct: 114 LEFLKEGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSM 173
Query: 137 IDFYAKCRYLKVSHCKFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDM 194
ID Y KC +K +H F + + K+L+SWN+M++GYA + + L+ + ++M
Sbjct: 174 IDGYVKCGLMKSAHKLFDLMPREIKNLISWNSMISGYA------QTADGLNTASKLFSEM 227
Query: 195 -QPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-------IHLSTACGFVICSCSVFN 246
+ + IS + ++ C + ++ K + + R I GFV + S+F+
Sbjct: 228 PEKDLISWNSMINGCVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKSLFD 287
Query: 247 QLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV-ANVKPNTVTIVSVLPACLKLAALP 305
Q+ RDVV NS+++ +V++ ++AL++ D+ +++ P+ T+V VL A +L L
Sbjct: 288 QMHQRDVVACNSMMAGYVQNKYHMEALEIFNDMEKDSHLSPDETTLVIVLSAIAQLGRLS 347
Query: 306 QGLGTGSFVWN-----------ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ + ++ ALIDM+ +CG+IQ + +F + +K++ WN MI
Sbjct: 348 KAMSMHVYIVEKRFPLGGKLGVALIDMHSKCGSIQHAISVFEGIENKSIDHWNAMI 403
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 128/267 (47%), Gaps = 26/267 (9%)
Query: 111 IKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLA 169
+K GR+E GLF+ M + D + ++ID YAK ++ + F ++ Q+D+V+ N+M+A
Sbjct: 243 VKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKSLFDQMHQRDVVACNSMMA 302
Query: 170 GYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH- 228
GY + E + ++ME + + P+ +L VL+A AQ+ + ++H Y++
Sbjct: 303 GYVQNKYHMEALEIFNDMEK-DSHLSPDETTLVIVLSAIAQLGRLSKAMSMHVYIVEKRF 361
Query: 229 ----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRD 278
I + + CG + + SVF + + + WN++I G A D+L
Sbjct: 362 PLGGKLGVALIDMHSKCGSIQHAISVFEGIENKSIDHWNAMIGGLAIHGLGELAFDMLMQ 421
Query: 279 VIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNALIDMYGRCG 326
+ +++P+ +T + VL AC + +GL + + L+D+ R G
Sbjct: 422 IERCSIQPDXITFIGVLNACSHSGLVKEGLLCFELMRRKHXIEPRLQHYGCLVDVLSRSG 481
Query: 327 AIQKSRKIFVLMP-HKNLVSWNVMISV 352
+I+ ++ + MP N V W +S
Sbjct: 482 SIELAKHLIEDMPMEPNDVIWRSFLSA 508
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 116/237 (48%), Gaps = 29/237 (12%)
Query: 140 YAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI 199
+A+C + + C FS + +D WNA++ Y+ G + LL MI+ + +
Sbjct: 45 FARCVFYEYYLCSFSAGEGEDPYLWNAVIKSYSHG--IDPRRALLLFCLMIENGVCVDKF 102
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQL 248
SLS VL AC++++ +K G IHG++ + I L CG + + VF+++
Sbjct: 103 SLSLVLKACSRLEFLKEGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRM 162
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
RD V +NS+I +V+ G + A L D++ +K N ++ S++ A GL
Sbjct: 163 PQRDSVSYNSMIDGYVKCGLMKSAHKLF-DLMPREIK-NLISWNSMISG---YAQTADGL 217
Query: 309 GTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
T S WN++I+ + G I+ ++ +F +MP +++V+W MI Y
Sbjct: 218 NTASKLFSEMPEKDLISWNSMINGCVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYA 274
>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/425 (23%), Positives = 177/425 (41%), Gaps = 82/425 (19%)
Query: 6 QVHAHLIVCGVELCAFLGSQLL----------------EVFCN--------WTSMMGMYN 41
Q HAH++ G+ F S+L+ +F W +++ Y
Sbjct: 25 QAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYA 84
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
E + +F+ M+ V PD + K+C G+ ++ +++ +
Sbjct: 85 NSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLF 144
Query: 102 VKRPLLDLFIKC-------------------------------GRMEITSGLFEEMDQDF 130
++ L+ L+ C G ME+ LF+EM +
Sbjct: 145 IQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLFDEMTERN 204
Query: 131 LVN-NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
+ + N +I Y L+ + F + K++VSWNAM+ GY+ G EV L ++M+
Sbjct: 205 VESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQ- 263
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS-----------TACGFV 238
++P+ +L VL+ACA V + G+ +H Y+ ++ I + + CG +
Sbjct: 264 -HAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSI 322
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ VFN +D+ WNSIIS G AL + +++V KPN VT V VL AC
Sbjct: 323 EKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSAC 382
Query: 299 LKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFVLMPHKNL-VS 345
+ L +G + + + ++D+ GR G ++++ ++ MP K V
Sbjct: 383 SRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVV 442
Query: 346 WNVMI 350
W ++
Sbjct: 443 WESLL 447
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 41/224 (18%)
Query: 141 AKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTIS 200
+ + + +H FS+I + WN ++ YA E + +M + + P+ +
Sbjct: 53 SHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQM--LHASVLPDKYT 110
Query: 201 LSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLS 249
+ L +C GV+ G+ IHG+VL+ IHL +CG + + + +++
Sbjct: 111 FTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRML 170
Query: 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG 309
RDVV WN+++SA+ G + A L ++ NV+
Sbjct: 171 ERDVVSWNALLSAYAERGLMELACHLFDEMTERNVES----------------------- 207
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
WN +I Y G ++++R++F P KN+VSWN MI+ Y
Sbjct: 208 -----WNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGY 246
>gi|356518834|ref|XP_003528082.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08490-like [Glycine max]
Length = 875
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/352 (25%), Positives = 159/352 (45%), Gaps = 60/352 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD---YRVGKDVY 88
+W +M+ E+ LF M+ RP++ + C+ Y G+ ++
Sbjct: 215 SWNAMIAGLAENRLVEDAFLLFSSMVKGPTRPNYATVANILPVCASFDKSVAYYCGRQIH 274
Query: 89 DYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKV 148
Y++ + E+ D V N+LI Y K ++
Sbjct: 275 SYVLQ-----------------------------WPELSADVSVCNALISLYLKVGQMRE 305
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
+ F + +DLV+WNA +AGY G + +L + ++T + P+++++ +L AC
Sbjct: 306 AEALFWTMDARDLVTWNAFIAGYTSNGEWLKALHLFGNLASLET-LLPDSVTMVSILPAC 364
Query: 209 AQVKGVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVW 256
AQ+K +K+GK IH Y+ RH + CG+ + F+ +S +D++ W
Sbjct: 365 AQLKNLKVGKQIHAYIFRHPFLFYDTAVGNALVSFYAKCGYTEEAYHTFSMISMKDLISW 424
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-------GLG 309
NSI AF L LL ++ ++P++VTI++++ C L + + +
Sbjct: 425 NSIFDAFGEKRHHSRFLSLLHCMLKLRIRPDSVTILAIIRLCASLLRVEKVKEIHSYSIR 484
Query: 310 TGSF-------VWNALIDMYGRCGAIQKSRKIFV-LMPHKNLVSWNVMISVY 353
TGS V NA++D Y +CG ++ + K+F L +NLV+ N +IS Y
Sbjct: 485 TGSLLSNTAPTVGNAILDAYSKCGNMEYANKMFQNLSEKRNLVTCNSLISGY 536
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 154/339 (45%), Gaps = 66/339 (19%)
Query: 48 EIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPL 106
+++ +F +M + P+ V C+ L D GK V+ Y+I F
Sbjct: 128 DVMRVFRMMHSSREALPNSVTVATVLPVCARLGDLDAGKCVHGYVIKSGF---------- 177
Query: 107 LDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH---CKFSKIKQKDLVS 163
DQD L N+L+ YAKC VSH F I KD+VS
Sbjct: 178 --------------------DQDTLGGNALVSMYAKCGL--VSHDAYAVFDNIAYKDVVS 215
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV-KGVKL--GKAI 220
WNAM+AG A E+ L M ++ +PN +++ +L CA K V G+ I
Sbjct: 216 WNAMIAGLAENRLVEDAFLLFSSM--VKGPTRPNYATVANILPVCASFDKSVAYYCGRQI 273
Query: 221 HGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
H YVL+ I L G + + ++F + RD+V WN+ I+ + +G+
Sbjct: 274 HSYVLQWPELSADVSVCNALISLYLKVGQMREAEALFWTMDARDLVTWNAFIAGYTSNGE 333
Query: 269 VVDALDLLRDVI-VANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW------------ 315
+ AL L ++ + + P++VT+VS+LPAC +L L G ++++
Sbjct: 334 WLKALHLFGNLASLETLLPDSVTMVSILPACAQLKNLKVGKQIHAYIFRHPFLFYDTAVG 393
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
NAL+ Y +CG +++ F ++ K+L+SWN + +G
Sbjct: 394 NALVSFYAKCGYTEEAYHTFSMISMKDLISWNSIFDAFG 432
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 163/355 (45%), Gaps = 63/355 (17%)
Query: 30 FCNWTSMMGMYNVLGYYEEIVNLFY--LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDV 87
F W S++ + + E ++LF+ L + +PDH V + K+CS L +G+ +
Sbjct: 6 FKTWGSVIWSLCLEAKHSEALSLFHHCLKGHEAFKPDHTVLAAILKSCSALLAPNLGRTL 65
Query: 88 YDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147
+ Y++ + LL+++ KCG + LF+++
Sbjct: 66 HGYVVKQGHGSCHVTNKGLLNMYAKCGMLVECLKLFDQL--------------------- 104
Query: 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ--PNTISLSGVL 205
SHC D V WN +L+G++ G + +++ M+ + + PN+++++ VL
Sbjct: 105 -SHC--------DPVVWNIVLSGFS--GSNKCDADVMRVFRMMHSSREALPNSVTVATVL 153
Query: 206 AACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSC------------SVFNQLSTRDV 253
CA++ + GK +HGYV++ T G + S +VF+ ++ +DV
Sbjct: 154 PVCARLGDLDAGKCVHGYVIKSGFDQDTLGGNALVSMYAKCGLVSHDAYAVFDNIAYKDV 213
Query: 254 VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL---KLAALPQGLGT 310
V WN++I+ + V DA L ++ +PN T+ ++LP C K A G
Sbjct: 214 VSWNAMIAGLAENRLVEDAFLLFSSMVKGPTRPNYATVANILPVCASFDKSVAYYCGRQI 273
Query: 311 GSFV--W----------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
S+V W NALI +Y + G ++++ +F M ++LV+WN I+ Y
Sbjct: 274 HSYVLQWPELSADVSVCNALISLYLKVGQMREAEALFWTMDARDLVTWNAFIAGY 328
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 100/381 (26%), Positives = 167/381 (43%), Gaps = 90/381 (23%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLF-YLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
W + + Y G + + ++LF L + + PD + AC++LK+ +VGK ++ Y
Sbjct: 320 TWNAFIAGYTSNGEWLKALHLFGNLASLETLLPDSVTMVSILPACAQLKNLKVGKQIHAY 379
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ F LF D V N+L+ FYAKC Y + ++
Sbjct: 380 IFRHPF------------LFY-----------------DTAVGNALVSFYAKCGYTEEAY 410
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME-MIQTDMQPNTISLSGVLAACA 209
FS I KDL+SWN++ + G + + L + M++ ++P+++++ ++ CA
Sbjct: 411 HTFSMISMKDLISWNSIFDAF---GEKRHHSRFLSLLHCMLKLRIRPDSVTILAIIRLCA 467
Query: 210 QVKGVKLGKAIHGYVLRHHIHLS--------------TACGFVICSCSVFNQLST-RDVV 254
+ V+ K IH Y +R LS + CG + + +F LS R++V
Sbjct: 468 SLLRVEKVKEIHSYSIRTGSLLSNTAPTVGNAILDAYSKCGNMEYANKMFQNLSEKRNLV 527
Query: 255 VWNSIISAFVRSGQVVDA-------------------------------LDLLRDVIVAN 283
NS+IS +V G DA L L ++
Sbjct: 528 TCNSLISGYVGLGSHHDANMIFSGMSETDLTTWNLMVRVYAENDCPEQALGLCHELQARG 587
Query: 284 VKPNTVTIVSVLPACLKLAALP-----QGLGTGS-----FVWNALIDMYGRCGAIQKSRK 333
+KP+TVTI+S+LP C ++A++ QG S + AL+D Y +CG I ++ K
Sbjct: 588 MKPDTVTIMSLLPVCTQMASVHLLSQCQGYIIRSCFKDLHLEAALLDAYAKCGIIGRAYK 647
Query: 334 IFVLMPHKNLVSWNVMISVYG 354
IF L K+LV + MI Y
Sbjct: 648 IFQLSAEKDLVMFTAMIGGYA 668
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/347 (22%), Positives = 155/347 (44%), Gaps = 30/347 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S+ + ++ ++L + M+ +RPD + + C+ L K+++ Y
Sbjct: 423 SWNSIFDAFGEKRHHSRFLSLLHCMLKLRIRPDSVTILAIIRLCASLLRVEKVKEIHSYS 482
Query: 92 I---SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ--DFLVNNSLIDFYAKCRYL 146
I S+ V +LD + KCG ME + +F+ + + + + NSLI Y
Sbjct: 483 IRTGSLLSNTAPTVGNAILDAYSKCGNMEYANKMFQNLSEKRNLVTCNSLISGYVGLGSH 542
Query: 147 KVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
++ FS + + DL +WN M+ YA E+ L E++ M+P+T+++ +L
Sbjct: 543 HDANMIFSGMSETDLTTWNLMVRVYAENDCPEQALGLCHELQ--ARGMKPDTVTIMSLLP 600
Query: 207 ACAQVKGVKLGKAIHGYVLR---HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVW 256
C Q+ V L GY++R +HL A CG + + +F + +D+V++
Sbjct: 601 VCTQMASVHLLSQCQGYIIRSCFKDLHLEAALLDAYAKCGIIGRAYKIFQLSAEKDLVMF 660
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL-------- 308
++I + G +AL + ++ ++P+ + S+L AC + +GL
Sbjct: 661 TAMIGGYAMHGMSEEALWIFSHMLKLGIQPDHIIFTSILSACSHAGRVDEGLKIFYSIEK 720
Query: 309 --GTGSFV--WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
G V + ++D+ R G I ++ + +P N W ++
Sbjct: 721 LHGMKPTVEQYACVVDLLARGGRISEAYSLVTSLPIEANANLWGTLL 767
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 105/218 (48%), Gaps = 25/218 (11%)
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+D +W +++ L E +L +P+ L+ +L +C+ + LG+
Sbjct: 4 RDFKTWGSVIWSLCLEAKHSEALSLFHHCLKGHEAFKPDHTVLAAILKSCSALLAPNLGR 63
Query: 219 AIHGYVLRH-----HI------HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
+HGYV++ H+ ++ CG ++ +F+QLS D VVWN ++S F S
Sbjct: 64 TLHGYVVKQGHGSCHVTNKGLLNMYAKCGMLVECLKLFDQLSHCDPVVWNIVLSGFSGSN 123
Query: 268 QV-VDALDLLRDVIVA-NVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----------- 314
+ D + + R + + PN+VT+ +VLP C +L L G +V
Sbjct: 124 KCDADVMRVFRMMHSSREALPNSVTVATVLPVCARLGDLDAGKCVHGYVIKSGFDQDTLG 183
Query: 315 WNALIDMYGRCGAI-QKSRKIFVLMPHKNLVSWNVMIS 351
NAL+ MY +CG + + +F + +K++VSWN MI+
Sbjct: 184 GNALVSMYAKCGLVSHDAYAVFDNIAYKDVVSWNAMIA 221
>gi|115468780|ref|NP_001057989.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|50725579|dbj|BAD33047.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|113596029|dbj|BAF19903.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|125597760|gb|EAZ37540.1| hypothetical protein OsJ_21869 [Oryza sativa Japonica Group]
Length = 530
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/381 (25%), Positives = 167/381 (43%), Gaps = 48/381 (12%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G + HA + G A+ GS L+E++ W M+ Y
Sbjct: 68 GRKAHAAAVKTGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIR 127
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G+Y V L M GV PD ACS +D +G+ ++ YM ++ F N V
Sbjct: 128 CGWYSAAVALSEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNV-FGFNLPV 186
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNS-LIDFYAKCRYLKVSHCKFSKIKQKDL 161
LLD++ K +E LFE+M +++ + L+ Y L + F++ K+KDL
Sbjct: 187 ANALLDMYTKNDCLEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDL 246
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
+ W AM+ G EE L +M+M + ++P+ ++ +L CA + + G+ IH
Sbjct: 247 ILWTAMINACVQHGCFEEALTLFRDMQMQR--VEPDRFTVVTLLTCCANLGALDQGEWIH 304
Query: 222 GYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y + I + + CG + S VF ++ RD W +II +GQ
Sbjct: 305 QYAEQRKMKIDAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAG 364
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNAL 318
AL+L +D+ + VKP+ VT + VL AC + +G + ++ L
Sbjct: 365 RALELFQDMQRSKVKPDGVTFIGVLSACCHGGLVDEGRKQFHAMREVYQIEPRVEHYSCL 424
Query: 319 IDMYGRCGAIQKSRKIFVLMP 339
+++ GR G + ++ ++ +P
Sbjct: 425 VNLLGRAGLLDEAERLIGDVP 445
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/359 (22%), Positives = 154/359 (42%), Gaps = 84/359 (23%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G + ++ ++Y + +G+ D F P V +A LK G+ + + F +A
Sbjct: 28 GSFARVMAVYYDLRARGLVADSFTYPFVLRAVGVLKLSVEGRKAHAAAVKTGFRWDAYTG 87
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
L++++ GR++I +F+EM + LV
Sbjct: 88 SSLMEMYTMLGRVDIARKVFDEM------------------------------PSRALVL 117
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
WN M+ Y G+ L ++ME ++ + P+ ++L + AC++ + + LG+ IH Y
Sbjct: 118 WNMMVRCYIRCGWYSAAVALSEQME--RSGVTPDRVTLVTAVTACSRARDLSLGRRIHVY 175
Query: 224 ---VLRHHIHLSTA--------------------------------------CGFVICSC 242
V ++ ++ A G + +
Sbjct: 176 MDNVFGFNLPVANALLDMYTKNDCLEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKAR 235
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
+FNQ +D+++W ++I+A V+ G +AL L RD+ + V+P+ T+V++L C L
Sbjct: 236 VLFNQCKEKDLILWTAMINACVQHGCFEEALTLFRDMQMQRVEPDRFTVVTLLTCCANLG 295
Query: 303 ALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
AL QG + + + ALIDMY +CG I+KS ++F M ++ +W +I
Sbjct: 296 ALDQGEWIHQYAEQRKMKIDAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAII 354
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 10/156 (6%)
Query: 209 AQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
A VK G Y + + T G V + VF+++ +R +V+WN ++ ++R G
Sbjct: 71 AHAAAVKTGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGW 130
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------LGTGSFVWNAL 318
A+ L + + V P+ VT+V+ + AC + L G G V NAL
Sbjct: 131 YSAAVALSEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNVFGFNLPVANAL 190
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+DMY + ++++ K+F MP +N++SW +++S YG
Sbjct: 191 LDMYTKNDCLEEAVKLFEQMPARNIISWTILVSGYG 226
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/371 (26%), Positives = 165/371 (44%), Gaps = 53/371 (14%)
Query: 4 GIQVHAHLIVCGVELCAFL-----GSQLLEVFCN-----WTSMMGMYNVLGYYEEIVNLF 53
G Q + ++ V +CA L QL + + W SM Y Y E+V LF
Sbjct: 65 GFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLF 124
Query: 54 YLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKC 113
+ M +RP+ F P V K+C ++ G+ V+ ++I F GN V L+D++
Sbjct: 125 FQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAG 184
Query: 114 GRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYA 172
G + +F EM +++ + S+I+ Y L + F ++D+V WN M++GY
Sbjct: 185 GTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYI 244
Query: 173 LGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS 232
GG E L EM M NT+ + GY ++
Sbjct: 245 EGGDMVEARKLFHEMPNRDV-MFWNTV--------------------LKGYATNGNVEAL 283
Query: 233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV-ANVKPNTVTI 291
+F ++ R++ WN++I + +G + L + ++ ++V PN T+
Sbjct: 284 EG---------LFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATL 334
Query: 292 VSVLPACLKLAAL-----------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340
V+VL AC +L AL GL +V NAL+DMY +CG I+ + +F M
Sbjct: 335 VTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDT 394
Query: 341 KNLVSWNVMIS 351
K+L+SWN +I
Sbjct: 395 KDLISWNTLIG 405
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/363 (25%), Positives = 165/363 (45%), Gaps = 49/363 (13%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVL-GYYEEIVNLFYLMIDKGVR 62
G QVH LI CG F+G+ L++++ ++ Y + +E V + MI+ +
Sbjct: 155 GEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYIL 214
Query: 63 PDHFVCPKVYKACSELKDYRVGKDV--YDYMISIKFEGNACVKRPLLDLFIKCGRMEITS 120
V + L D +DV ++ M+S EG G M
Sbjct: 215 SADLVSAR------RLFDLAPERDVVLWNIMVSGYIEG---------------GDMVEAR 253
Query: 121 GLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREE 179
LF EM ++D + N+++ YA ++ F ++ ++++ SWNA++ GYA G E
Sbjct: 254 KLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFE 313
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA- 234
V M + ++D+ PN +L VL+ACA++ + LGK +H Y L+ ++++ A
Sbjct: 314 VLGSFKRM-LSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNAL 372
Query: 235 ------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288
CG + + SVF + T+D++ WN++I + DAL+L + A KP+
Sbjct: 373 MDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDG 432
Query: 289 VTIVSVLPACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFV 336
+T + +L AC + + G + + ++DM R G ++++
Sbjct: 433 ITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVR 492
Query: 337 LMP 339
MP
Sbjct: 493 KMP 495
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 108/239 (45%), Gaps = 22/239 (9%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
+ L+ A + + + F +I ++ WN+M GYA EV L +M+ +
Sbjct: 72 ITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGM- 130
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-----------HHIHLSTACGFVIC 240
D++PN + VL +C ++ + G+ +H ++++ I + +A G V
Sbjct: 131 -DIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGD 189
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL-----RDVIVANVKPNTVTIVSVL 295
+ +F ++ R+VV W S+I+ ++ S +V A L RDV++ N+ + +
Sbjct: 190 AYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDM 249
Query: 296 PACLKL-AALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
KL +P WN ++ Y G ++ +F MP +N+ SWN +I Y
Sbjct: 250 VEARKLFHEMPN---RDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGY 305
>gi|224121686|ref|XP_002318647.1| predicted protein [Populus trichocarpa]
gi|222859320|gb|EEE96867.1| predicted protein [Populus trichocarpa]
Length = 744
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 104/399 (26%), Positives = 169/399 (42%), Gaps = 80/399 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSM-------------------MGMYNV-- 42
G+++H L+ GV+ FL S L+E++ + M ++NV
Sbjct: 161 GLEIHGFLVKKGVDSDEFLVSALIEMYMKCGDIKNAENVFERIRDNELVGRNMAVWNVMI 220
Query: 43 LGYYEE-----IVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
LGY + LF M++ G+ PD V CS+L D VGK ++ ++ +
Sbjct: 221 LGYVSNECLSLALELFVEMLELGISPDSSTVVVVLVLCSQLLDLAVGKQIHGLILGLG-- 278
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
+D D V +L++ Y KC + S F + +
Sbjct: 279 ----------------------------LDDDVRVGTALMEMYFKCGDPETSLQIFKRSQ 310
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+LV W +++ A G+ E E M+ P+ + L L AC+ + G
Sbjct: 311 NHNLVMWGSVMLNCAQNGYPNEALEFFSEF-MLDCGF-PDPVILLAALRACSFLSLKPRG 368
Query: 218 KAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
AIHG+ ++ + CG + + VF LSTRD+V WN++IS F ++
Sbjct: 369 MAIHGFAIKMGFDSDVFVGGALVDFYGKCGDMEYAQQVFYGLSTRDLVSWNALISGFAQN 428
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLGTGSFVW 315
+AL RD+ +KPNTVT+ +L C L+ L T + V
Sbjct: 429 KCADEALKAFRDMQSKQIKPNTVTMACILSVCTHLSVMILCKEVHCYLLRHWFETNALVN 488
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
N+LI Y +CG I SR +F +P +N V+WN ++ +G
Sbjct: 489 NSLISAYAKCGDIHSSRTVFEKLPVRNEVTWNSILLGFG 527
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 90/384 (23%), Positives = 160/384 (41%), Gaps = 78/384 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+ +G Q+H ++ G++ +G+ L+E++ W S+M
Sbjct: 264 LAVGKQIHGLILGLGLDDDVRVGTALMEMYFKCGDPETSLQIFKRSQNHNLVMWGSVMLN 323
Query: 40 YNVLGYYEEIVNLFY-LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
GY E + F M+D G PD + +ACS L G ++ + I + F
Sbjct: 324 CAQNGYPNEALEFFSEFMLDCGF-PDPVILLAALRACSFLSLKPRGMAIHGFAIKMGF-- 380
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
D D V +L+DFY KC ++ + F +
Sbjct: 381 ----------------------------DSDVFVGGALVDFYGKCGDMEYAQQVFYGLST 412
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+DLVSWNA+++G+A +E +M+ Q ++PNT++++ +L+ C + + L K
Sbjct: 413 RDLVSWNALISGFAQNKCADEALKAFRDMQSKQ--IKPNTVTMACILSVCTHLSVMILCK 470
Query: 219 AIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
+H Y+LRH + CG + S +VF +L R+ V WNSI+ F G
Sbjct: 471 EVHCYLLRHWFETNALVNNSLISAYAKCGDIHSSRTVFEKLPVRNEVTWNSILLGFGMHG 530
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVW 315
+ + + AN+KP+ T S+L +C + G L +
Sbjct: 531 RTDEMFATFEKMKEANIKPDHGTFTSLLSSCSHSGKVDAGWKYFNSMMEDYNLEPRVEQY 590
Query: 316 NALIDMYGRCGAIQKSRKIFVLMP 339
++D+ GR G + ++ + + MP
Sbjct: 591 TCMVDLLGRAGNLNQAYDLIMSMP 614
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/398 (21%), Positives = 179/398 (44%), Gaps = 76/398 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNV 42
G Q+H HL+ G F+ + LL ++ +W +M+ +
Sbjct: 58 GKQIHGHLLKFGFLQDIFVKNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQ 117
Query: 43 LGYYEEIVNLFYLMIDK--GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G Y + + +F M+ + G + C +C+ +K G +++ +++ + +
Sbjct: 118 SGDYVKSLVMFRRMVKECGGSYHNRVACLAALSSCASIKCLTHGLEIHGFLVKKGVDSDE 177
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
+ L+++++KCG ++ +FE + + LV ++
Sbjct: 178 FLVSALIEMYMKCGDIKNAENVFERIRDNELVG-------------------------RN 212
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEM--EMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+ WN M+ GY E +L E+ EM++ + P++ ++ VL C+Q+ + +GK
Sbjct: 213 MAVWNVMILGYV----SNECLSLALELFVEMLELGISPDSSTVVVVLVLCSQLLDLAVGK 268
Query: 219 AIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
IHG + L + + TA CG S +F + ++V+W S++ ++G
Sbjct: 269 QIHGLILGLGLDDDVRVGTALMEMYFKCGDPETSLQIFKRSQNHNLVMWGSVMLNCAQNG 328
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-----------TGSFVWN 316
+AL+ + ++ P+ V +++ L AC L+ P+G+ + FV
Sbjct: 329 YPNEALEFFSEFMLDCGFPDPVILLAALRACSFLSLKPRGMAIHGFAIKMGFDSDVFVGG 388
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
AL+D YG+CG ++ ++++F + ++LVSWN +IS +
Sbjct: 389 ALVDFYGKCGDMEYAQQVFYGLSTRDLVSWNALISGFA 426
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 29/169 (17%)
Query: 214 VKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISA 262
V GK IHG++L+ I + + CG + +F ++ RD V WN++IS
Sbjct: 55 VNKGKQIHGHLLKFGFLQDIFVKNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISG 114
Query: 263 FVRSGQVVDALDLLRDVI--VANVKPNTVTIVSVLPACLKLAALPQGL-----------G 309
F +SG V +L + R ++ N V ++ L +C + L GL
Sbjct: 115 FCQSGDYVKSLVMFRRMVKECGGSYHNRVACLAALSSCASIKCLTHGLEIHGFLVKKGVD 174
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPH-----KNLVSWNVMISVY 353
+ F+ +ALI+MY +CG I+ + +F + +N+ WNVMI Y
Sbjct: 175 SDEFLVSALIEMYMKCGDIKNAENVFERIRDNELVGRNMAVWNVMILGY 223
>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
Length = 939
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/392 (24%), Positives = 172/392 (43%), Gaps = 73/392 (18%)
Query: 4 GIQVHAHLIVCGVEL-------------CAFLGSQLL-------EVFCNWTSMMGMYNVL 43
G ++HA L+ CG E C ++ S L + + +W SM+ Y
Sbjct: 284 GRELHAALLKCGTEFNIQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQN 343
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
Y E ++ F M+ G PDH + A L G++V+ Y + + + + +
Sbjct: 344 RLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIA 403
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
L+D++IKC +E ++ +F+ M + KD VS
Sbjct: 404 NTLMDMYIKCYSVECSARVFDRM------------------------------RIKDHVS 433
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
W ++A YA E + + P + + +L AC+ +K + L K +H Y
Sbjct: 434 WTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDP--MMMGSILEACSGLKSISLLKQVHSY 491
Query: 224 VLRHH----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
+R+ I + CG V + ++F L +D+V W S+++ F +G + +A+
Sbjct: 492 AIRNGLLDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAV 551
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTGSF-----VWNALIDMY 322
L ++ A ++P++V +V +L A L++L +G L G F V ++L+DMY
Sbjct: 552 ALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMY 611
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
CG++ + K+F K++V W MI+ G
Sbjct: 612 SGCGSMNYALKVFDEAKCKDVVLWTAMINATG 643
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/399 (23%), Positives = 164/399 (41%), Gaps = 80/399 (20%)
Query: 4 GIQVHAHLIVCGV---ELCAFLGSQLLEVFC---------------------NWTSMMGM 39
G Q+HAH + G + FL ++LL ++ +W +++G
Sbjct: 74 GRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGA 133
Query: 40 YNVLGYYEEIVNLFYLMIDK----GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIK 95
G E V ++ M G PD V KAC D R G +V+ +
Sbjct: 134 CLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSG 193
Query: 96 FEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSK 155
+ + V L+ ++ KCG ++ +FE M
Sbjct: 194 LDRSTLVANALVGMYAKCGLLDSALRVFEWMRDG-------------------------- 227
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
+D+ SWN+ ++G G E +L M+ M N+ + GVL CA++ +
Sbjct: 228 ---RDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSM--NSYTTVGVLQVCAELAQLN 282
Query: 216 LGKAIHGYVLRHHIHLS----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVR 265
G+ +H +L+ + CG+V + VF ++ +D + WNS++S +V+
Sbjct: 283 HGRELHAALLKCGTEFNIQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQ 342
Query: 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFV 314
+ +A+D +++ P+ IVS+L A L A+ Q L + +
Sbjct: 343 NRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQI 402
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
N L+DMY +C +++ S ++F M K+ VSW +I+ Y
Sbjct: 403 ANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACY 441
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 148/331 (44%), Gaps = 56/331 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+++ Y Y E + F +G++ D + + +ACS LK + K V+ Y
Sbjct: 433 SWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYA 492
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + LLDL +K N +ID Y +C + +
Sbjct: 493 I----------RNGLLDLILK---------------------NRIIDIYGECGEVCYALN 521
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +KD+V+W +M+ +A G E L +M + +QP++++L G+L A A +
Sbjct: 522 IFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKM--LNAGIQPDSVALVGILGAIAGL 579
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ GK IHG+++R + + + CG + + VF++ +DVV+W ++I
Sbjct: 580 SSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMI 639
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------L 308
+A G A+ + + ++ V P+ V+ +++L AC + +G L
Sbjct: 640 NATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKL 699
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+ ++D+ GR G +++ K MP
Sbjct: 700 QPWQEHYACVVDLLGRSGQTEEAYKFIKSMP 730
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 76/343 (22%), Positives = 148/343 (43%), Gaps = 54/343 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S + G + E ++LF M G + + V + C+EL G++++ +
Sbjct: 232 SWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAAL 291
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ E N I+C N+L+ YA+C ++ +
Sbjct: 292 LKCGTEFN-----------IQC--------------------NALLVMYARCGWVDSALR 320
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I KD +SWN+ML+ Y E + EM+Q P+ + +L+A +
Sbjct: 321 VFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFG--EMVQNGFNPDHACIVSLLSAVGHL 378
Query: 212 KGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ G+ +H Y ++ + + C V CS VF+++ +D V W +II
Sbjct: 379 GRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTII 438
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------- 313
+ + +S + +A+ R +K + + + S+L AC L ++ S+
Sbjct: 439 ACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGLL 498
Query: 314 ---VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ N +ID+YG CG + + IF ++ K++V+W M++ +
Sbjct: 499 DLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCF 541
>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
Length = 1024
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/397 (22%), Positives = 175/397 (44%), Gaps = 77/397 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ELG Q+H+ +I +L A++ S L++++ +WT+M+
Sbjct: 466 LELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAG 525
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y + ++ + F M+D+G+R D AC+ L+ + G+ ++
Sbjct: 526 YTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIH---------AQ 576
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
ACV SG D N+L+ Y++C ++ S+ F + +
Sbjct: 577 ACV-----------------SGF----SSDLPFQNALVTLYSRCGKIEESYLAFEQTEAG 615
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D ++WNA+++G+ G EE + + M + + N + + A ++ +K GK
Sbjct: 616 DNIAWNALVSGFQQSGNNEEALRVF--VRMNREGIDNNNFTFGSAVKAASETANMKQGKQ 673
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H + + I + CG + + F ++ST++ V WN+II+A+ + G
Sbjct: 674 VHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGF 733
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GLGTGSFVWN 316
+ALD +I +NV+PN VT+V VL AC + + + GL +
Sbjct: 734 GSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYV 793
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
++DM R G + ++++ MP K + + W ++S
Sbjct: 794 CVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSA 830
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 150/343 (43%), Gaps = 54/343 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W M+ Y +L +F M + + P+ + P + K C L D +G+ ++ +I
Sbjct: 418 WNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQII 477
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F+ NA V L+D++ K G+++ D L+
Sbjct: 478 KTNFQLNAYVCSVLIDMYAKLGKLDTA--------WDILI-------------------- 509
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
+ KD+VSW M+AGY F ++ L +M+ ++ + + L+ ++ACA ++
Sbjct: 510 --RFAGKDVVSWTTMIAGYTQYNFDDKA--LTTFRQMLDRGIRSDEVGLTNAVSACAGLQ 565
Query: 213 GVKLGKAIHGYV-----------LRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+K G+ IH + L + CG + S F Q D + WN+++S
Sbjct: 566 ALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVS 625
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTG--- 311
F +SG +AL + + + N T S + A + A + QG TG
Sbjct: 626 GFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDS 685
Query: 312 -SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ V NALI MY +CG+I + K F+ + KN VSWN +I+ Y
Sbjct: 686 ETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAY 728
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/347 (23%), Positives = 158/347 (45%), Gaps = 59/347 (17%)
Query: 33 WTSM---MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
W M + N++G E+ LF M+ + V P+ V +AC R G +D
Sbjct: 114 WNKMIKELASRNLIG---EVFGLFVRMVSENVTPNEGTFSGVLEAC------RGGSVAFD 164
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
+ I R+ L++ + +V N LID Y++ ++ ++
Sbjct: 165 VVEQIH------------------ARI-----LYQGLRDSTVVCNPLIDLYSRNGFVDLA 201
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F ++ KD SW AM++G + E L +M ++ + P + S VL+AC
Sbjct: 202 RRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVL--GIMPTPYAFSSVLSACK 259
Query: 210 QVKGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNS 258
+++ +++G+ +HG VL+ T G +I + +F+ +S RD V +N+
Sbjct: 260 KIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNT 319
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------G 307
+I+ + G A++L + + + ++P++ T+ S++ AC L + G
Sbjct: 320 LINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLG 379
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + + AL+++Y +C I+ + F+ +N+V WNVM+ YG
Sbjct: 380 FASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYG 426
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/396 (20%), Positives = 165/396 (41%), Gaps = 75/396 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMG--------------MYNVL--- 43
+E+G Q+H ++ G ++ + L+ ++ + +++ YN L
Sbjct: 264 LEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLING 323
Query: 44 ----GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
GY E+ + LF M G+ PD + ACS G+ ++ Y + F N
Sbjct: 324 LSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASN 383
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
++ LL+L+ KC +E + +D+ F + + +
Sbjct: 384 NKIEGALLNLYAKCADIE-----------------TALDY-------------FLETEVE 413
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
++V WN ML Y L + +M++ ++ PN + +L C ++ ++LG+
Sbjct: 414 NVVLWNVMLVAYGLLDDLRNSFRIFRQMQI--EEIVPNQYTYPSILKTCIRLGDLELGEQ 471
Query: 220 IHGYVLRHHIHLST-ACGFVICSCSVFNQLST----------RDVVVWNSIISAFVRSGQ 268
IH +++ + L+ C +I + +L T +DVV W ++I+ + +
Sbjct: 472 IHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNF 531
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNA 317
AL R ++ ++ + V + + + AC L AL + G + NA
Sbjct: 532 DDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNA 591
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L+ +Y RCG I++S F + ++WN ++S +
Sbjct: 592 LVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGF 627
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/318 (22%), Positives = 130/318 (40%), Gaps = 56/318 (17%)
Query: 58 DKGVRPDHFVCPKVYKACSELK-DYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM 116
++G+RP+H + + C + G+ ++ ++ + + N C+ L D ++ G +
Sbjct: 37 NRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDL 96
Query: 117 EITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGF 176
+F+EM ++ + +WN M+ A
Sbjct: 97 YGAFKVFDEM------------------------------PERTIFTWNKMIKELASRNL 126
Query: 177 REEVTNLLDEMEMIQTDMQPNTISLSGVLAAC-AQVKGVKLGKAIHGYVLRHHIHLSTAC 235
EV L + M+ ++ PN + SGVL AC + + IH +L + ST
Sbjct: 127 IGEVFGLF--VRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVV 184
Query: 236 -----------GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV 284
GFV + VF+ L +D W ++IS ++ +A+ L D+ V +
Sbjct: 185 CNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGI 244
Query: 285 KPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRK 333
P SVL AC K+ +L G + ++V NAL+ +Y G + +
Sbjct: 245 MPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEH 304
Query: 334 IFVLMPHKNLVSWNVMIS 351
IF M ++ V++N +I+
Sbjct: 305 IFSNMSQRDAVTYNTLIN 322
>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 881
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 99/396 (25%), Positives = 164/396 (41%), Gaps = 75/396 (18%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYE-------------- 47
ELG Q+HA+ + +G+ L+++ M+ V +
Sbjct: 288 ELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGY 347
Query: 48 -------EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
E + +F + + D ACS +K Y G I+ G
Sbjct: 348 ARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEG---------IQLHG-- 396
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
L +KCG +D + V N+++D YAKC L + F ++ KD
Sbjct: 397 --------LAVKCG-----------LDFNICVANTILDMYAKCGALMEACLIFDDMEIKD 437
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
VSWNA++A + EE L + M+++ M+P+ + V+ ACA K + G +
Sbjct: 438 AVSWNAIIAAHEQNEHVEETLALF--VSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEV 495
Query: 221 HGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
HG V++ I + CG ++ + + +L R V WNSIIS F Q
Sbjct: 496 HGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQG 555
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNAL 318
+AL ++ V P+ T +VL C LA + G L + ++ + +
Sbjct: 556 ENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQILKLQLHSDVYIASTI 615
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+DMY +CG +Q SR +F P ++ V+W+ MI Y
Sbjct: 616 VDMYSKCGNMQDSRIMFEKAPKRDYVTWSAMICAYA 651
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/394 (23%), Positives = 176/394 (44%), Gaps = 77/394 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
GIQ+H + CG++ + + +L+++ +W +++ +
Sbjct: 391 GIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQ 450
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+ EE + LF M+ + PD + V KAC+ K G +V+
Sbjct: 451 NEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVH-------------- 496
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
GR+ I SG M D+ V +++ID Y KC L + +++++ V
Sbjct: 497 -----------GRV-IKSG----MGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTV 540
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SWN++++G++ E + M +Q + P+ + + VL CA + V+LGK IHG
Sbjct: 541 SWNSIISGFSSEKQGENALSYFSRM--LQVGVIPDNFTYATVLDICANLATVELGKQIHG 598
Query: 223 YVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+L+ +H + + CG + S +F + RD V W+++I A+ G D
Sbjct: 599 QILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSAMICAYAYHGLGED 658
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNALI 319
A+ L ++ + NVKPN +SVL AC + + +GL + ++ ++
Sbjct: 659 AIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSCMV 718
Query: 320 DMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
D+ GR G + ++ ++ MP + + V W ++ +
Sbjct: 719 DLLGRSGQVNEALELIESMPFEADDVIWRTLLGI 752
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/393 (24%), Positives = 171/393 (43%), Gaps = 77/393 (19%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLE-------------VFCN--------WTSMMGMYN 41
LG+QVH I G + G+ L++ +FC W++++ Y
Sbjct: 188 LGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYV 247
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+ E + L+ +M+D+G+ +++C+ L + +G ++ Y + F +
Sbjct: 248 RNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNI 307
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
V LD++ KC RM +F + SH
Sbjct: 308 VGTATLDMYAKCDRMVDARKVFNTFPNP----------------TRQSH----------- 340
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNTISLSGVLAACAQVKGVKLGKAI 220
NA++ GYA +++V L+ +Q + + ISLSG L AC+ +KG G +
Sbjct: 341 ---NALIVGYAR---QDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQL 394
Query: 221 HGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
HG ++ + + CG ++ +C +F+ + +D V WN+II+A ++ V
Sbjct: 395 HGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHV 454
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWNAL 318
+ L L ++ + ++P+ T SV+ AC AL G+G FV +A+
Sbjct: 455 EETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAI 514
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
IDMY +CG + ++ KI + + VSWN +IS
Sbjct: 515 IDMYCKCGMLVEAEKIHERLEERTTVSWNSIIS 547
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 141/307 (45%), Gaps = 25/307 (8%)
Query: 71 VYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ-D 129
+++ CS LK GK + + F V LL + KC + +F++M Q D
Sbjct: 44 IFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDKMPQRD 103
Query: 130 FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
+ N++I YA ++ + F + ++D+VSWN+ML+ Y GF + + +M +
Sbjct: 104 VISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFTKMRL 163
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFV 238
++ +Q + + + VL AC ++ LG +H ++ + + + C +
Sbjct: 164 LE--IQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKL 221
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ ++F ++ R+ V W+++I+ +VR+ + + L L + ++ + + T S +C
Sbjct: 222 DHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSC 281
Query: 299 LKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
L+A G G + V A +DMY +C + +RK+F P+ S N
Sbjct: 282 AGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHN 341
Query: 348 VMISVYG 354
+I Y
Sbjct: 342 ALIVGYA 348
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/364 (22%), Positives = 155/364 (42%), Gaps = 55/364 (15%)
Query: 13 VCGVELCAFLGSQLLEV-FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKV 71
V +E FL + E +W SM+ Y G++ + + +F M ++ D+ V
Sbjct: 117 VGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVV 176
Query: 72 YKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFL 131
KAC+ ++DY +G V+ I + F D D +
Sbjct: 177 LKACTGIEDYGLGLQVHCLAIQMGF------------------------------DSDVV 206
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
+L+D Y+ C+ L + F ++ +++ V W+A++AGY E L M +
Sbjct: 207 TGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVM--LD 264
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVIC 240
M + + + +CA + +LG +H Y L+ + + + C ++
Sbjct: 265 EGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVD 324
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ VFN N++I + R QV++AL++ R + + + + +++ L AC
Sbjct: 325 ARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSA 384
Query: 301 LAALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
+ +G+ V N ++DMY +CGA+ ++ IF M K+ VSWN +
Sbjct: 385 IKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAI 444
Query: 350 ISVY 353
I+ +
Sbjct: 445 IAAH 448
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 126/301 (41%), Gaps = 74/301 (24%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ G++VH +I G+ L F+GS +++++C +W S++
Sbjct: 489 LNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISG 548
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
++ E ++ F M+ GV PD+F V C+ L +GK ++ ++ ++ +
Sbjct: 549 FSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQILKLQLHSD 608
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ ++D++ KCG M+ + +FE K ++
Sbjct: 609 VYIASTIVDMYSKCGNMQDSRIMFE------------------------------KAPKR 638
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D V+W+AM+ YA G E+ L +EM++ +++PN VL ACA + V K
Sbjct: 639 DYVTWSAMICAYAYHGLGEDAIKLFEEMQL--QNVKPNHTIFISVLRACAHMGFVD--KG 694
Query: 220 IHGY-VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRD 278
+H + +R H L C ++ RSGQV +AL+L+
Sbjct: 695 LHYFREMRSHYGLDPQMEHYSC------------------MVDLLGRSGQVNEALELIES 736
Query: 279 V 279
+
Sbjct: 737 M 737
>gi|242066066|ref|XP_002454322.1| hypothetical protein SORBIDRAFT_04g028670 [Sorghum bicolor]
gi|241934153|gb|EES07298.1| hypothetical protein SORBIDRAFT_04g028670 [Sorghum bicolor]
Length = 637
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/344 (26%), Positives = 157/344 (45%), Gaps = 54/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W+ ++G Y +++ + F M G+ P+ V +AC L GK ++
Sbjct: 219 SWSVIIGGYARSSQWDKAWDAFSAMQCSGLLPNVSVLVMAIQACGALGCLVRGKQMHTMA 278
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + F NA V N LID Y KC ++
Sbjct: 279 VVLGFGRNATVW------------------------------NCLIDMYGKCGSMESCRR 308
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +D VSWN +++ Y G EEV ++ +M+ ++ + +L +AACA +
Sbjct: 309 VFDTAISRDQVSWNTIISSYVRLGLCEEVLEMIVQMQ--ESGFTIDRFTLGSGVAACAHL 366
Query: 212 KGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ G+A HGY++R + + + CG++ + VF+++ R+ V W++++
Sbjct: 367 ADIDSGRAFHGYLIRRALDTEVIQGTALLDMYSKCGYMDLARLVFDRMDERNYVSWDALL 426
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL---GTGSFVWN- 316
S FV +G+V ALD R + AN+K N T ++L C G G V N
Sbjct: 427 SGFVENGRVDSALDTFRQMESANIKSNQHTFANLLRLCGDRRYREYGRQIHGHAIRVINQ 486
Query: 317 -------ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
LIDMY +CG+I+ S+ +F+ M +NL+SWN ++S Y
Sbjct: 487 MNVVLETELIDMYAKCGSIEVSQLLFLRMNERNLISWNTLLSGY 530
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/345 (22%), Positives = 153/345 (44%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ Y LG EE++ + M + G D F AC+ L D G+ + Y+
Sbjct: 320 SWNTIISSYVRLGLCEEVLEMIVQMQESGFTIDRFTLGSGVAACAHLADIDSGRAFHGYL 379
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I +R L D + + +L+D Y+KC Y+ ++
Sbjct: 380 I----------RRAL--------------------DTEVIQGTALLDMYSKCGYMDLARL 409
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +++ VSW+A+L+G+ G + + +ME +++ N + + +L C
Sbjct: 410 VFDRMDERNYVSWDALLSGFVENGRVDSALDTFRQME--SANIKSNQHTFANLLRLCGDR 467
Query: 212 KGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ + G+ IHG+ +R I + CG + S +F +++ R+++ WN+++
Sbjct: 468 RYREYGRQIHGHAIRVINQMNVVLETELIDMYAKCGSIEVSQLLFLRMNERNLISWNTLL 527
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGS- 312
S +V GQ V +++ R + +A V+P+ T+ +L C L G + T S
Sbjct: 528 SGYVGDGQPVATINIYRQMEMACVRPDHYTLAGLLNLCRFQGLLRYGRQIHARLIKTSSE 587
Query: 313 ---FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ L+ MY +C + + + L+ +N + VYG
Sbjct: 588 MNVVLQTLLVHMYFKCKRWRDAHNVCTLIRERNSHVYEAFFKVYG 632
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 145/332 (43%), Gaps = 54/332 (16%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G + E+V LF M +GV + FV P V++AC+ L D R+ + V+ +I+ + V
Sbjct: 130 GRHAEVVELFCSMRREGVPVNRFVLPSVFRACACLWDRRMLQAVHGLVINCSLCQHVVVG 189
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
L +I G L+D +K F+ I Q ++VS
Sbjct: 190 TALAAAYIDFG---------------------LVDDASKV---------FNDISQPNVVS 219
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH-- 221
W+ ++ GYA ++ + M+ + + PN L + AC + + GK +H
Sbjct: 220 WSVIIGGYARSSQWDKAWDAFSAMQC--SGLLPNVSVLVMAIQACGALGCLVRGKQMHTM 277
Query: 222 ---------GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
V I + CG + VF+ +RD V WN+IIS++VR G +
Sbjct: 278 AVVLGFGRNATVWNCLIDMYGKCGSMESCRRVFDTAISRDQVSWNTIISSYVRLGLCEEV 337
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDM 321
L+++ + + + T+ S + AC LA + G L T AL+DM
Sbjct: 338 LEMIVQMQESGFTIDRFTLGSGVAACAHLADIDSGRAFHGYLIRRALDTEVIQGTALLDM 397
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
Y +CG + +R +F M +N VSW+ ++S +
Sbjct: 398 YSKCGYMDLARLVFDRMDERNYVSWDALLSGF 429
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 98/213 (46%), Gaps = 24/213 (11%)
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
S +A A G EV L M + + N L V ACA + ++ +A+HG
Sbjct: 118 SESADFVALAHAGRHAEVVELFCSMR--REGVPVNRFVLPSVFRACACLWDRRMLQAVHG 175
Query: 223 YVLR----HHIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V+ H+ + TA G V + VFN +S +VV W+ II + RS Q
Sbjct: 176 LVINCSLCQHVVVGTALAAAYIDFGLVDDASKVFNDISQPNVVSWSVIIGGYARSSQWDK 235
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALID 320
A D + + + PN +V + AC L L +G G + VWN LID
Sbjct: 236 AWDAFSAMQCSGLLPNVSVLVMAIQACGALGCLVRGKQMHTMAVVLGFGRNATVWNCLID 295
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
MYG+CG+++ R++F ++ VSWN +IS Y
Sbjct: 296 MYGKCGSMESCRRVFDTAISRDQVSWNTIISSY 328
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/197 (18%), Positives = 88/197 (44%), Gaps = 32/197 (16%)
Query: 30 FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
+ +W +++ + G + ++ F M ++ + + + C + + G+ ++
Sbjct: 419 YVSWDALLSGFVENGRVDSALDTFRQMESANIKSNQHTFANLLRLCGDRRYREYGRQIHG 478
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
+ I + + N ++ L+D++ KCG +E++ LF M+
Sbjct: 479 HAIRVINQMNVVLETELIDMYAKCGSIEVSQLLFLRMN---------------------- 516
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
+++L+SWN +L+GY G N+ +MEM ++P+ +L+G+L C
Sbjct: 517 --------ERNLISWNTLLSGYVGDGQPVATINIYRQMEM--ACVRPDHYTLAGLLNLCR 566
Query: 210 QVKGVKLGKAIHGYVLR 226
++ G+ IH +++
Sbjct: 567 FQGLLRYGRQIHARLIK 583
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 21/135 (15%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
E G Q+H H I ++ L ++L++++ +W +++ Y
Sbjct: 471 EYGRQIHGHAIRVINQMNVVLETELIDMYAKCGSIEVSQLLFLRMNERNLISWNTLLSGY 530
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G +N++ M VRPDH+ + C R G+ ++ +I E N
Sbjct: 531 VGDGQPVATINIYRQMEMACVRPDHYTLAGLLNLCRFQGLLRYGRQIHARLIKTSSEMNV 590
Query: 101 CVKRPLLDLFIKCGR 115
++ L+ ++ KC R
Sbjct: 591 VLQTLLVHMYFKCKR 605
>gi|108710611|gb|ABF98406.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 787
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/380 (25%), Positives = 172/380 (45%), Gaps = 71/380 (18%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
+T+M+ + + ++ + +F+ M+ GV P+ V KAC +G +D +
Sbjct: 213 FTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKAC-------IGAGEFDLAM 265
Query: 93 SIK--------FEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKC 143
SI + N V+ L+ L+++ G + +F+EM+ +D + +L+D YA+
Sbjct: 266 SIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAEL 325
Query: 144 RYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSG 203
L+ + ++ +++ VSW ++A + G +E +L +M+ +PN S
Sbjct: 326 GDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYS--QMLADGCRPNISCFSS 383
Query: 204 VLAACAQVKGVKLGKAIHGYVLR----HHIHLSTACGFVICSC----------------- 242
VL ACA ++ ++ G+ IH L+ +++ +S+A + C C
Sbjct: 384 VLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKN 443
Query: 243 ---------------------SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281
+F ++ R+V WNSIIS + ++ Q +DAL ++
Sbjct: 444 IVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLA 503
Query: 282 ANVKPNTVTIVSVLPACLKLAALPQG---------LGTGS--FVWNALIDMYGRCGAIQK 330
+ P +T SVL AC L +L G LG FV AL DMY + G +
Sbjct: 504 SGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDS 563
Query: 331 SRKIFVLMPHKNLVSWNVMI 350
S+++F MP +N V+W MI
Sbjct: 564 SKRVFYEMPKRNDVAWTAMI 583
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 82/345 (23%), Positives = 164/345 (47%), Gaps = 26/345 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ + G +E V+L+ M+ G RP+ V AC+ L+D R G+ +++
Sbjct: 345 SWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQT 404
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSH 150
+ + N V L+D++ KC ++ +F + Q +V NSLI Y+ + +
Sbjct: 405 LKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVEAE 464
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F K+ +++ SWN++++GYA R+ + L M+ + P I+ S VL ACA
Sbjct: 465 ELFKKMPARNVASWNSIISGYAQN--RQFIDALKSFHAMLASGQSPGEITFSSVLLACAS 522
Query: 211 VKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ +++GK +H + ++ I + TA G + S VF ++ R+ V W ++
Sbjct: 523 LCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAM 582
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GL 308
I +G +++ L D+I A + PN T +++L AC + G+
Sbjct: 583 IQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQACGI 642
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLV-SWNVMISV 352
+ + ++D+ R G + ++ + + + K+ SW ++S
Sbjct: 643 SPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALLSA 687
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 96/244 (39%), Gaps = 56/244 (22%)
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
+ AM+AG+ L ++ + EM + + PN I+L V+ AC L +I G
Sbjct: 213 FTAMIAGFVLNELPKDALGVFHEM--LSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGL 270
Query: 224 VLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV------- 264
++ + I L G + +F+++ RDVV W +++ +
Sbjct: 271 AMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEG 330
Query: 265 ------------------------RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ G +A+ L ++ +PN SVL AC
Sbjct: 331 ARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACAS 390
Query: 301 LAALPQGL-----------GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L L G FV +ALIDMY +C + ++ IF +P KN+V WN +
Sbjct: 391 LQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSL 450
Query: 350 ISVY 353
IS Y
Sbjct: 451 ISGY 454
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/327 (22%), Positives = 124/327 (37%), Gaps = 75/327 (22%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ Y + + + F+ M+ G P V AC+ L +GK V+ +
Sbjct: 477 SWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHAKI 536
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + + + V +L D YAK L S
Sbjct: 537 IKLGIK------------------------------ESIFVGTALSDMYAKSGDLDSSKR 566
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +++ V+W AM+ G A GF EE L ++M I + PN + +L AC+
Sbjct: 567 VFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDM--ISAGITPNEQTFLAILFACS-- 622
Query: 212 KGVKLGKAIHGYVLRHHIH---LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
H ++ H +H + ACG + + ++ R+G
Sbjct: 623 ---------HSGLVEHAMHYFEMMQACGI------------SPKAKHYTCMVDVLARAGH 661
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPAC---------LKLAALPQGL---GTGSFVWN 316
+ +A DLL + K + ++L AC + A Q L T +V
Sbjct: 662 LAEAEDLLLKI---ESKSEANSWAALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVL- 717
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNL 343
L +MY CG + + ++ +LM NL
Sbjct: 718 -LSNMYASCGKWKDAAEMRILMKGINL 743
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 48/195 (24%)
Query: 203 GVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISA 262
G C V G A + +++R H+ G ++ + +F+ + R VV + +++ A
Sbjct: 134 GAFRDCVSVVGAASPFA-YDFMVREHVK----AGDIVSARRLFDGMPERSVVSYTTMVDA 188
Query: 263 FVRSGQVVDALDLLR-------------------------------DVIVANVKPNTVTI 291
++ G V DA++L R +++ V PN +T+
Sbjct: 189 LMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITL 248
Query: 292 VSVLPACL-----KLAALPQGLGTGSF-------VWNALIDMYGRCGAIQKSRKIFVLMP 339
VSV+ AC+ LA GL S V N+LI +Y R G +R++F M
Sbjct: 249 VSVIKACIGAGEFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEME 308
Query: 340 HKNLVSWNVMISVYG 354
+++VSW ++ VY
Sbjct: 309 VRDVVSWTALLDVYA 323
>gi|255541646|ref|XP_002511887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549067|gb|EEF50556.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 478
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/399 (24%), Positives = 182/399 (45%), Gaps = 80/399 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMM-GMYN 41
GIQVHAHL+ G+ L +++L+V+ W +++ G+ N
Sbjct: 33 GIQVHAHLVKLGLYNVLSLQNKILDVYVKCKEFKDAHKLFDEMTVRNVVTWNTVICGLVN 92
Query: 42 VLGYYEEIV----NLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
Y+ + + F M+ V D +++AC EL +G+ ++ ++ + F+
Sbjct: 93 CGNNYKPCLYTGFSYFKKMLLDEVGFDPITLNVLFRACLELNGIEIGRQLHCLVVKLGFQ 152
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
N LVN++L+D Y KC + C F +
Sbjct: 153 LNC------------------------------LVNSALVDLYGKCGLATEARCVFDDVM 182
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
KDLV WN ML+ YAL EE + M++ ++ + + S +L +CA + +LG
Sbjct: 183 YKDLVLWNVMLSCYALNSLAEEALTVFKLMQL--ENLIGDGFTFSSMLNSCATLGSWELG 240
Query: 218 KAIHGYV--LRHHIHLSTACG---------FVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
+ IHG + L + + A G ++ + F+ ++ ++VV WN+++ A+ R
Sbjct: 241 RQIHGLICKLSFDLDILVASGIVNMYAKNEYIEDARKAFDCMTAKNVVSWNTMVVAYGRQ 300
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVW 315
G +A+ LL+++++ + P+ +T+ S+L +C ++A + GL + +
Sbjct: 301 GDGKEAMKLLKEMLLEDFAPDELTLASILSSCGSVSASCEIMQVHVYVVKFGLQSFLSIG 360
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
NA+I+ Y +CG + K F +P NLV+W +IS Y
Sbjct: 361 NAMINAYSKCGRAASALKSFNSVPEPNLVTWTSLISGYA 399
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/340 (21%), Positives = 141/340 (41%), Gaps = 64/340 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+E+G Q+H ++ G +L + S L++++ W M+
Sbjct: 136 IEIGRQLHCLVVKLGFQLNCLVNSALVDLYGKCGLATEARCVFDDVMYKDLVLWNVMLSC 195
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y + EE + +F LM + + D F + +C+ L + +G+ ++ + + F
Sbjct: 196 YALNSLAEEALTVFKLMQLENLIGDGFTFSSMLNSCATLGSWELGRQIHGLICKLSF--- 252
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D D LV + +++ YAK Y++ + F + K
Sbjct: 253 ---------------------------DLDILVASGIVNMYAKNEYIEDARKAFDCMTAK 285
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
++VSWN M+ Y G +E LL EM + D P+ ++L+ +L++C V
Sbjct: 286 NVVSWNTMVVAYGRQGDGKEAMKLLKEM--LLEDFAPDELTLASILSSCGSVSASCEIMQ 343
Query: 220 IHGYVLRH-----------HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H YV++ I+ + CG + FN + ++V W S+IS + +
Sbjct: 344 VHVYVVKFGLQSFLSIGNAMINAYSKCGRAASALKSFNSVPEPNLVTWTSLISGYAFNSL 403
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
D + + ++ A V+P+ + + VL AC PQ L
Sbjct: 404 PKDGIKMFEKMLSAGVRPDQIAFLGVLSACSHAGCHPQAL 443
>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 596
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/379 (23%), Positives = 169/379 (44%), Gaps = 75/379 (19%)
Query: 5 IQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNVL 43
Q HAH++ G + F+ + L+ + N WT+M+ +
Sbjct: 123 FQFHAHILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRN 182
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
E + F M GV + V KA + +D R G+ ++ +
Sbjct: 183 DSSLEAMTYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGF------------- 229
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
+++ GR+ D + +SL+D Y KC + F ++ +++V+
Sbjct: 230 ------YLEAGRVRC----------DVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVT 273
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
W A++AGY G E+ + +EM +++D+ PN +LS VL+ACA V + G+ +H Y
Sbjct: 274 WTALIAGYVQGRCFEKGMFVFEEM--LKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCY 331
Query: 224 VLRHHIHLSTACG------FVICSCS-----VFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
V+++ I ++T G + C C VF +L ++V W ++I+ F G + A
Sbjct: 332 VIKNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVYTWTAMINGFAAHGYAIGA 391
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNALID 320
+DL ++ ++V PN VT + VL AC + +G L + + ++D
Sbjct: 392 VDLFHTMLSSHVSPNEVTFIVVLSACAHGGLVEEGRRLFLSMKERFNLEPKADHYACMVD 451
Query: 321 MYGRCGAIQKSRKIFVLMP 339
++GR G +++++ + MP
Sbjct: 452 LFGRKGLLEEAKALIERMP 470
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 121/252 (48%), Gaps = 25/252 (9%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
D D V NSLI Y+ C + F + KD+VSW AM+ G+ E
Sbjct: 134 FDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEAMTYF- 192
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH------------IHLST 233
+EM ++ + N +++ VL A + + V+ G++IHG+ L + +
Sbjct: 193 -VEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYG 251
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
CG + VF+++ +R+VV W ++I+ +V+ + + +++ ++V PN T+ S
Sbjct: 252 KCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSS 311
Query: 294 VLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
VL AC + AL +G + + V LID Y +CG ++++ +F + KN
Sbjct: 312 VLSACAHVGALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKN 371
Query: 343 LVSWNVMISVYG 354
+ +W MI+ +
Sbjct: 372 VYTWTAMINGFA 383
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 16/118 (13%)
Query: 247 QLSTRDVVVWNSIISAFVRSGQVV--DALDLL--RDVIVANVKPNTVTIVSVLPACLKLA 302
Q+ T + +W+S++ F SG+V L L R + V P+ T +L A KL
Sbjct: 61 QIQTPSIQLWDSLVGHF--SGRVTLNRRLSFLSYRQMRRNGVVPSRHTFPPLLKAVFKLR 118
Query: 303 A----------LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
L G + FV N+LI Y CG + ++F K++VSW MI
Sbjct: 119 DANPFQFHAHILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMI 176
>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Cucumis sativus]
Length = 638
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 126/244 (51%), Gaps = 24/244 (9%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
+ LI Y KC L + F ++ Q+++VSW AM++ Y+ GF E NL +EM++
Sbjct: 99 LRTRLIVLYNKCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLF--VEMLR 156
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVIC 240
+D +PN + + +L +C G + G+ IH ++ + + + G +
Sbjct: 157 SDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICD 216
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ VF+ L RDVV +IIS + + G +AL L R + + + N+VT SVL A
Sbjct: 217 AHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSG 276
Query: 301 LAALPQG-------LGTGSFVW----NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
LAAL G L +G + + N+LIDMY +CG + +R+IF MP + +SWN M
Sbjct: 277 LAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAM 336
Query: 350 ISVY 353
+ Y
Sbjct: 337 LVGY 340
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/333 (21%), Positives = 145/333 (43%), Gaps = 57/333 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ Y+ G+ E +NLF M+ P+HF + +C + G+ ++
Sbjct: 130 SWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIA 189
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I +E + V +SL+D YAK + +H
Sbjct: 190 IKRNYESH------------------------------MFVGSSLLDMYAKSGRICDAHG 219
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + ++D+V+ A+++GYA G EE L ++++ M N+++ + VL A + +
Sbjct: 220 VFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQI--EGMNSNSVTYASVLTALSGL 277
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ GK +H +VLR I + + CG V + +F+ + R + WN+++
Sbjct: 278 AALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAML 337
Query: 261 SAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPAC-------------LKLAALPQ 306
+ + G + L+L + + N VKP+++T ++VL C +
Sbjct: 338 VGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKD 397
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
G+ + ++D+ GR G ++++ MP
Sbjct: 398 GIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMP 430
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 89/173 (51%), Gaps = 22/173 (12%)
Query: 204 VLAACAQVKGVKLGKAIHGYVLRH----HIHLSTA--CGFVICSC-----SVFNQLSTRD 252
+L C + ++ G+ +H ++++ ++L T + C C +F+++ R+
Sbjct: 68 ILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQRN 127
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKL 301
VV W ++ISA+ + G +AL+L +++ ++ +PN T ++L +C +
Sbjct: 128 VVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHS 187
Query: 302 AALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
A+ + + FV ++L+DMY + G I + +F +P +++V+ +IS Y
Sbjct: 188 IAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYA 240
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 80/376 (21%), Positives = 144/376 (38%), Gaps = 93/376 (24%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNW---------------------TSMMGMY 40
E G Q+H+ I E F+GS LL+++ T+++ Y
Sbjct: 180 ETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGY 239
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+G EE + LF + +G+ + V A S L GK V+ +++
Sbjct: 240 AQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLR------- 292
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
SG + + ++ NSLID Y+KC + + F + ++
Sbjct: 293 -------------------SGQYSYV----VLLNSLIDMYSKCGNVCYARRIFDSMPERT 329
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+SWNAML GY+ G EV L M + ++P++I+ VL+ C+ + +G I
Sbjct: 330 CISWNAMLVGYSKHGMAREVLELFKLMRE-ENKVKPDSITYLAVLSGCSHGQLEDMGLEI 388
Query: 221 HGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVV-----WNSIISAFVRSGQVVDALDL 275
+N ++ +D + + ++ R+G+V +A D
Sbjct: 389 -----------------------FYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDF 425
Query: 276 LRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW-----NA-----LIDMYGRC 325
++ + P S+L +C + + G+ G + NA L ++Y
Sbjct: 426 IKKMPFV---PTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASA 482
Query: 326 GAIQKSRKIFVLMPHK 341
G + R I LM K
Sbjct: 483 GKWEDMRNIRDLMQEK 498
>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
Length = 644
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 165/347 (47%), Gaps = 29/347 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y G E +LF M +G+ D F + ACS + GK V+ ++
Sbjct: 178 SWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHL 237
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSH 150
+ + + L+D++ KCG + + F+ M V+ S++ AK + +
Sbjct: 238 LVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAAR 297
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F +I +K ++SWNAM++ Y GG E +L + M+++ + P+ +L+ VL+AC Q
Sbjct: 298 DWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLL--GLAPDEFTLAAVLSACGQ 355
Query: 211 VKGVKLGKAIHGYVLRHHIH------------LSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ + GK IH +R + H + CG V + S+F+++ +++V+ WN+
Sbjct: 356 LGDLASGKMIHD-CIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNA 414
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------- 307
II A G+ DAL R ++ P+ +T V++L AC L G
Sbjct: 415 IIGALAMHGRAQDALMFFRSMVSDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVY 474
Query: 308 -LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
+ G + ++D+ GR G + K+ + MP + ++V W ++
Sbjct: 475 NVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGA 521
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 99/424 (23%), Positives = 179/424 (42%), Gaps = 112/424 (26%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVN-------------- 51
Q+HAHL+V GV+ + SQ+L +C + G++ ++ I +
Sbjct: 30 QLHAHLVVHGVD---DVTSQILASYCALPAGGGVWYARQLFDRIPDPDRFVYNSLIRAYC 86
Query: 52 ----------LFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
L MI +G+ P+ F P + KAC+ ++ + + ++ + F G
Sbjct: 87 NSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVGQV- 145
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
V N+L+ YA L S F ++ +++
Sbjct: 146 -----------------------------FVGNALLHSYASAGSLGDSRRFFDEMVDRNV 176
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSWN+M+ GYA G E +L + M + + + +L +L AC+ ++ GK +H
Sbjct: 177 VSWNSMINGYAQAGNTREACSLFEGMR--RQGLLADEFTLVSLLFACSAEGNLEFGKLVH 234
Query: 222 GYVL----RHHIHLSTA-------CGFVICS-------------------CSV------- 244
++L R + L+ A CG ++ + C++
Sbjct: 235 SHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASID 294
Query: 245 -----FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
F Q+ + ++ WN++IS +V+ G+ +ALDL + + + P+ T+ +VL AC
Sbjct: 295 AARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACG 354
Query: 300 KLAALPQGL-----------GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
+L L G G ++N+L+DMY RCG + + +F MP KN++SWN
Sbjct: 355 QLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNA 414
Query: 349 MISV 352
+I
Sbjct: 415 IIGA 418
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 66/131 (50%), Gaps = 11/131 (8%)
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
A G V + +F+++ D V+NS+I A+ S +AL LLR +I + PN T+
Sbjct: 56 AGGGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPF 115
Query: 294 VLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
+L AC ++ A G FV NAL+ Y G++ SR+ F M +N
Sbjct: 116 LLKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRN 175
Query: 343 LVSWNVMISVY 353
+VSWN MI+ Y
Sbjct: 176 VVSWNSMINGY 186
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 158/335 (47%), Gaps = 35/335 (10%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNVLG 44
Q+HA +I G+ L +L+ ++ W ++ + G
Sbjct: 45 QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTING 104
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
E+ + L+ M+ +G+ D F P V KAC+ +GK V+ +I F G+ V+
Sbjct: 105 LSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQN 164
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
L+D + KCG +FE+M +V+ ++I C L+ + F +I K++VS
Sbjct: 165 NLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVS 224
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
W AM+ GY EE L M+ ++ PN ++ ++ AC ++ + LG+ IH Y
Sbjct: 225 WTAMINGYIRNQQPEEALELFKRMQA--ENIFPNEYTMVSLIKACTEMGILTLGRGIHDY 282
Query: 224 VLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
+++ ++L TA CG + + VF + + + WNS+I++ G +A
Sbjct: 283 AIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEA 342
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
L+L ++ NVKP+ +T + VL AC+ + + +G
Sbjct: 343 LNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEG 377
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 136/273 (49%), Gaps = 35/273 (12%)
Query: 114 GRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYAL 173
GRM + D V+++LID Y+KC LK + F +I +++VSW +M+ GY
Sbjct: 2034 GRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQ 2093
Query: 174 GGFREEVTNLL--------DEMEMIQTDMQP-NTISLSGVLAACAQVKGVKLGKAIHGYV 224
E+ N L +E E+ + P +++ + VL+AC++V G + + +HG+V
Sbjct: 2094 N---EQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFV 2150
Query: 225 LRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
++ S CG + S VF+ + +D + WNS+I+ + +SG +AL
Sbjct: 2151 VKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEAL 2210
Query: 274 DLLRDVIV-ANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDM 321
++ ++ V+ N VT+ +VL AC AL G L V ++IDM
Sbjct: 2211 EVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDM 2270
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
Y +CG ++ ++K F M KN+ SW M++ YG
Sbjct: 2271 YCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYG 2303
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/400 (23%), Positives = 167/400 (41%), Gaps = 84/400 (21%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY-- 40
G H V G E F+ S L++++ +WTSM+ Y
Sbjct: 2034 GRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQ 2093
Query: 41 -----NVLGYYEEIVNLFYLMIDKGVRP-DHFVCPKVYKACSELKDYRVGKDVYDYMISI 94
N L +++ + + D P D V V ACS + + + V+ +++
Sbjct: 2094 NEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKK 2153
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFS 154
F+G+ V N+L+D YAKC VS F
Sbjct: 2154 GFDGSIGV------------------------------GNTLMDAYAKCGQPLVSKKVFD 2183
Query: 155 KIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGV 214
+++KD +SWN+M+A YA G E + M + ++ N ++LS VL ACA +
Sbjct: 2184 WMEEKDDISWNSMIAVYAQSGLSGEALEVFHGM-VRHVGVRYNAVTLSAVLLACAHAGAL 2242
Query: 215 KLGKAIHGYVLRHHIHLSTACGFVI----CSC-------SVFNQLSTRDVVVWNSIISAF 263
+ GK IH V++ + + G I C C F+++ ++V W ++++ +
Sbjct: 2243 RAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGY 2302
Query: 264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTG 311
G+ +ALD+ ++ A VKPN +T VSVL AC + +G + G
Sbjct: 2303 GMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPG 2362
Query: 312 SFVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMI 350
+ ++D++GR G + ++ + M K + V W ++
Sbjct: 2363 IEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLL 2402
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 130/290 (44%), Gaps = 59/290 (20%)
Query: 118 ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFR 177
I SGL D L+ LI Y+ + + F +I+ +WN ++ + G
Sbjct: 51 IRSGL----SNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLS 106
Query: 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH---------- 227
E+ L+ M+ + + + V+ AC + LGK +HG ++++
Sbjct: 107 EQA--LMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQN 164
Query: 228 ----------HIHLS----------------------TACGFVICSCSVFNQLSTRDVVV 255
H + +CG + + +F+++ +++VV
Sbjct: 165 NLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVS 224
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG------ 309
W ++I+ ++R+ Q +AL+L + + N+ PN T+VS++ AC ++ L G G
Sbjct: 225 WTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAI 284
Query: 310 -----TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G ++ ALIDMY +CG+I+ + ++F MP K+L +WN MI+ G
Sbjct: 285 KNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLG 334
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 32/197 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ Y EE + LF M + + P+ + + KAC+E+ +G+ ++DY
Sbjct: 224 SWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYA 283
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I C I G++ + +LID Y+KC +K +
Sbjct: 284 IK------------------NC----IEIGVY--------LGTALIDMYSKCGSIKDAIE 313
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +K L +WN+M+ + G +E NL EME + +++P+ I+ GVL AC +
Sbjct: 314 VFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERV--NVKPDAITFIGVLCACVHI 371
Query: 212 KGVKLGKAIHGYVLRHH 228
K VK G A + +H+
Sbjct: 372 KNVKEGCAYFTRMTQHY 388
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 119/269 (44%), Gaps = 57/269 (21%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-GVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W SM+ +Y G E + +F+ M+ GVR + V AC+ R GK ++D
Sbjct: 2192 SWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQ 2251
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+I + E N CV S+ID Y KC ++++
Sbjct: 2252 VIKMDLEYNVCV------------------------------GTSIIDMYCKCGRVEMAK 2281
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++K+K++ SW AM+AGY + G +E ++ +M++ ++PN I+ VLAAC+
Sbjct: 2282 KTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIF--YKMVRAGVKPNYITFVSVLAACSH 2339
Query: 211 VKGVKLGKAIHGY-VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
V+ G H + ++H + C ++ F R+G +
Sbjct: 2340 AGLVEEG--WHWFNAMKHKYDIEPGIEHYGC------------------MVDLFGRAGCL 2379
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+A +L++ + +KP+ V S+L AC
Sbjct: 2380 NEAYNLIKRM---KMKPDFVVWGSLLGAC 2405
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 11/120 (9%)
Query: 245 FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL 304
+ + +V WNS+I+ R G V+AL + + P + + +C L L
Sbjct: 1972 YKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDL 2031
Query: 305 PQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G T FV +ALIDMY +CG ++ +R +F +P +N+VSW MI+ Y
Sbjct: 2032 VSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGY 2091
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 11/153 (7%)
Query: 210 QVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
K ++ G + + R IHL + G + + +F Q+ WN II A +G
Sbjct: 47 HAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLS 106
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWNAL 318
AL L ++++ + + T V+ AC ++ G FV N L
Sbjct: 107 EQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNL 166
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
ID Y +CG + + K+F M +N+VSW +IS
Sbjct: 167 IDFYFKCGHTRFALKVFEKMRVRNVVSWTTVIS 199
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 36/167 (21%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ G +H +I +E +G+ +++++C +WT+M+
Sbjct: 2242 LRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAG 2301
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVG-------KDVYDYMI 92
Y + G +E +++FY M+ GV+P++ V ACS G K YD
Sbjct: 2302 YGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEP 2361
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFE--EMDQDFLVNNSLI 137
I+ G C ++DLF + G + L + +M DF+V SL+
Sbjct: 2362 GIEHYG--C----MVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLL 2402
>gi|225427607|ref|XP_002269121.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220,
mitochondrial [Vitis vinifera]
Length = 828
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 139/250 (55%), Gaps = 27/250 (10%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D + N+LID YAKC L S C F ++ +D++SWN+M+ G A + ++ +L +
Sbjct: 107 DSFLCNALIDMYAKCGELSSSECVFGGMEYRDIISWNSMMRGCAYNNYPKK--SLWYFKK 164
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-------HH------IHLSTAC 235
M + Q + +SL+ ++A A + + G+ IHG+ ++ H+ I L + C
Sbjct: 165 MAYSSEQADNVSLTCAVSASALLGELSFGQVIHGWGIKLGYKDISHNSFENSLISLYSQC 224
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV-IVANVKPNTVTIVSV 294
+ + +F ++ +D+V WN+++ + ++ +A DLL ++ ++ V+P++VT+V +
Sbjct: 225 RDIQAAEILFKEMKYKDIVSWNAMLDGLALNQRIWEAFDLLHEMQLLGCVQPDSVTVVII 284
Query: 295 LPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
+P C +L L +G +G V N+LIDMY +C ++++ +F +P ++L
Sbjct: 285 IPLCAELMLLREGRAVHGLTLRREMGLDFSVTNSLIDMYSKCKDVKRAEHVFKAIPERDL 344
Query: 344 VSWNVMISVY 353
VSWN MIS Y
Sbjct: 345 VSWNAMISGY 354
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/271 (31%), Positives = 142/271 (52%), Gaps = 30/271 (11%)
Query: 109 LFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAML 168
+ ++ GR L EM DF V NSLID Y+KC+ +K + F I ++DLVSWNAM+
Sbjct: 292 MLLREGRAVHGLTLRREMGLDFSVTNSLIDMYSKCKDVKRAEHVFKAIPERDLVSWNAMI 351
Query: 169 AGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-- 226
+GY+ G E +L +++Q+ Q + +L +L +C + ++ G++IH + L+
Sbjct: 352 SGYSQNGHSREAQHLF--RQLLQSYSQCSLSTLLAILPSCDSSEFLQFGESIHCWQLKLG 409
Query: 227 ---------HHIHLSTACGFVICSCSVFNQLS-TRDVVVWNSIISAFVRSGQVVDAL--- 273
+ + CG ++ S+ +S D+V WN++++ ++G +AL
Sbjct: 410 FANNPLAVNSLMLMYINCGDLVACFSLLQTVSAAADIVCWNTVMAGCTQNGHFWEALKAF 469
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMY 322
+L+R +V ++V + +V+ AC L L G + + V NALI MY
Sbjct: 470 NLMRQ--DPDVCHDSVALFNVISACGNLELLFAGGSLHGLALKTLMESDIRVQNALITMY 527
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
GRCG I+ +R IF ++NL SWN MIS +
Sbjct: 528 GRCGEIENARIIFGFSCNRNLCSWNCMISAF 558
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 133/264 (50%), Gaps = 33/264 (12%)
Query: 111 IKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAG 170
IK G +I+ FE NSLI Y++CR ++ + F ++K KD+VSWNAML G
Sbjct: 201 IKLGYKDISHNSFE---------NSLISLYSQCRDIQAAEILFKEMKYKDIVSWNAMLDG 251
Query: 171 YALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH 230
AL E +LL EM+++ +QP+++++ ++ CA++ ++ G+A+HG LR +
Sbjct: 252 LALNQRIWEAFDLLHEMQLLGC-VQPDSVTVVIIIPLCAELMLLREGRAVHGLTLRREMG 310
Query: 231 LS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
L + C V + VF + RD+V WN++IS + ++G +A L R +
Sbjct: 311 LDFSVTNSLIDMYSKCKDVKRAEHVFKAIPERDLVSWNAMISGYSQNGHSREAQHLFRQL 370
Query: 280 IVANVKPNTVTIVSVLPAC-----------LKLAALPQGLGTGSFVWNALIDMYGRCGAI 328
+ + + + T++++LP+C + L G N+L+ MY CG +
Sbjct: 371 LQSYSQCSLSTLLAILPSCDSSEFLQFGESIHCWQLKLGFANNPLAVNSLMLMYINCGDL 430
Query: 329 QKSRKIF-VLMPHKNLVSWNVMIS 351
+ + ++V WN +++
Sbjct: 431 VACFSLLQTVSAAADIVCWNTVMA 454
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 80/345 (23%), Positives = 145/345 (42%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y+ G+ E +LF ++ + + +C + + G+ ++ +
Sbjct: 346 SWNAMISGYSQNGHSREAQHLFRQLLQSYSQCSLSTLLAILPSCDSSEFLQFGESIHCWQ 405
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + F N L+ ++I CG + L + +
Sbjct: 406 LKLGFANNPLAVNSLMLMYINCGDLVACFSLLQTVS------------------------ 441
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
D+V WN ++AG G E + M D+ ++++L V++AC +
Sbjct: 442 -----AAADIVCWNTVMAGCTQNGHFWEALKAFNLMRQ-DPDVCHDSVALFNVISACGNL 495
Query: 212 KGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ + G ++HG L+ I + A CG + + +F R++ WN +I
Sbjct: 496 ELLFAGGSLHGLALKTLMESDIRVQNALITMYGRCGEIENARIIFGFSCNRNLCSWNCMI 555
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
SAF ++ AL+L + +PN +TIV +L AC +L L G L
Sbjct: 556 SAFSQNKDGRRALELFCHI---EFEPNEITIVGILSACTQLGVLRHGKQIHGHVIRSRLQ 612
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
SFV AL DMY CG + + +IF P +++ +WN MIS +G
Sbjct: 613 GNSFVSAALEDMYSNCGRLDTAFQIFQSSPERSVAAWNSMISAFG 657
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 108/239 (45%), Gaps = 28/239 (11%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
M+ D V N+LI Y +C ++ + F ++L SWN M++ ++ L
Sbjct: 513 MESDIRVQNALITMYGRCGEIENARIIFGFSCNRNLCSWNCMISAFSQNKDGRRALELFC 572
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTA 234
+E +PN I++ G+L+AC Q+ ++ GK IHG+V+R + + +
Sbjct: 573 HIEF-----EPNEITIVGILSACTQLGVLRHGKQIHGHVIRSRLQGNSFVSAALEDMYSN 627
Query: 235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV 294
CG + + +F R V WNS+ISAF A++L ++ +P T +S+
Sbjct: 628 CGRLDTAFQIFQSSPERSVAAWNSMISAFGFHSNGGKAIELFHEMRECGTRPTKSTFISL 687
Query: 295 LPACLKLAALPQGLGTGSFVWN------------ALIDMYGRCGAIQKSRKIFVLMPHK 341
L AC + +GL S + ++DM GR G + ++ + MP +
Sbjct: 688 LSACSHSGLVNEGLWYYSNMLELFNVEADTEHHVCMVDMLGRAGRLGEAYEFIRQMPTQ 746
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 71/121 (58%), Gaps = 11/121 (9%)
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
S ++F+++ RDV++WN++I+A V + A++L +++ V ++ T++ V+ A
Sbjct: 26 SWALFDEILYRDVILWNAMITASVENQCFGVAVNLFVELMGEGVGLDSTTLLIVVSASSH 85
Query: 301 LAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
+ L QG L + SF+ NALIDMY +CG + S +F M +++++SWN M
Sbjct: 86 MGNLTQGRVLHGISFKTGLLSDSFLCNALIDMYAKCGELSSSECVFGGMEYRDIISWNSM 145
Query: 350 I 350
+
Sbjct: 146 M 146
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 107/244 (43%), Gaps = 28/244 (11%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
+ SL+ Y++ S F +I +D++ WNAM+ NL +E++
Sbjct: 9 TSTSLLTAYSRAADFSSSWALFDEILYRDVILWNAMITASVENQCFGVAVNLF--VELMG 66
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVIC 240
+ ++ +L V++A + + + G+ +HG ++ I + CG +
Sbjct: 67 EGVGLDSTTLLIVVSASSHMGNLTQGRVLHGISFKTGLLSDSFLCNALIDMYAKCGELSS 126
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
S VF + RD++ WNS++ + +L + + ++ + + V++ + A
Sbjct: 127 SECVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMAYSSEQADNVSLTCAVSASAL 186
Query: 301 LAALPQG--------------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
L L G + SF N+LI +Y +C IQ + +F M +K++VSW
Sbjct: 187 LGELSFGQVIHGWGIKLGYKDISHNSFE-NSLISLYSQCRDIQAAEILFKEMKYKDIVSW 245
Query: 347 NVMI 350
N M+
Sbjct: 246 NAML 249
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/188 (18%), Positives = 72/188 (38%), Gaps = 35/188 (18%)
Query: 30 FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
C+W M+ ++ + LF + P+ + AC++L R GK ++
Sbjct: 548 LCSWNCMISAFSQNKDGRRALELFCHI---EFEPNEITIVGILSACTQLGVLRHGKQIHG 604
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
++I + +GN+ V L D++ CGR++ +F+
Sbjct: 605 HVIRSRLQGNSFVSAALEDMYSNCGRLDTAFQIFQSS----------------------- 641
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
++ + +WN+M++ + + L EM T +P + +L+AC+
Sbjct: 642 -------PERSVAAWNSMISAFGFHSNGGKAIELFHEMRECGT--RPTKSTFISLLSACS 692
Query: 210 QVKGVKLG 217
V G
Sbjct: 693 HSGLVNEG 700
>gi|62733531|gb|AAX95648.1| Tetratricopeptide repeat, putative [Oryza sativa Japonica Group]
Length = 888
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/380 (25%), Positives = 172/380 (45%), Gaps = 71/380 (18%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
+T+M+ + + ++ + +F+ M+ GV P+ V KAC +G +D +
Sbjct: 213 FTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKAC-------IGAGEFDLAM 265
Query: 93 SIK--------FEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKC 143
SI + N V+ L+ L+++ G + +F+EM+ +D + +L+D YA+
Sbjct: 266 SIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAEL 325
Query: 144 RYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSG 203
L+ + ++ +++ VSW ++A + G +E +L +M+ +PN S
Sbjct: 326 GDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYS--QMLADGCRPNISCFSS 383
Query: 204 VLAACAQVKGVKLGKAIHGYVLR----HHIHLSTACGFVICSC----------------- 242
VL ACA ++ ++ G+ IH L+ +++ +S+A + C C
Sbjct: 384 VLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKN 443
Query: 243 ---------------------SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281
+F ++ R+V WNSIIS + ++ Q +DAL ++
Sbjct: 444 IVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLA 503
Query: 282 ANVKPNTVTIVSVLPACLKLAALPQG---------LGTGS--FVWNALIDMYGRCGAIQK 330
+ P +T SVL AC L +L G LG FV AL DMY + G +
Sbjct: 504 SGQSPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDS 563
Query: 331 SRKIFVLMPHKNLVSWNVMI 350
S+++F MP +N V+W MI
Sbjct: 564 SKRVFYEMPKRNDVAWTAMI 583
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/345 (23%), Positives = 164/345 (47%), Gaps = 26/345 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ + G +E V+L+ M+ G RP+ V AC+ L+D R G+ +++
Sbjct: 345 SWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQT 404
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSH 150
+ + N V L+D++ KC ++ +F + Q +V NSLI Y+ + +
Sbjct: 405 LKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVEAE 464
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F K+ +++ SWN++++GYA R+ + L M+ + P I+ S VL ACA
Sbjct: 465 ELFKKMPARNVASWNSIISGYAQN--RQFIDALKSFHAMLASGQSPGEITFSSVLLACAS 522
Query: 211 VKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ +++GK +H + ++ I + TA G + S VF ++ R+ V W ++
Sbjct: 523 LCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAM 582
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GL 308
I +G +++ L D+I A + PN T +++L AC + G+
Sbjct: 583 IQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQACGI 642
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLV-SWNVMISV 352
+ + ++D+ R G + ++ + + + K+ SW ++S
Sbjct: 643 SPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALLSA 687
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 96/245 (39%), Gaps = 56/245 (22%)
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
+ AM+AG+ L ++ + EM + + PN I+L V+ AC L +I G
Sbjct: 213 FTAMIAGFVLNELPKDALGVFHEM--LSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGL 270
Query: 224 VLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV------- 264
++ + I L G + +F+++ RDVV W +++ +
Sbjct: 271 AMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEG 330
Query: 265 ------------------------RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ G +A+ L ++ +PN SVL AC
Sbjct: 331 ARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACAS 390
Query: 301 LAALPQGL-----------GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L L G FV +ALIDMY +C + ++ IF +P KN+V WN +
Sbjct: 391 LQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSL 450
Query: 350 ISVYG 354
IS Y
Sbjct: 451 ISGYS 455
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/327 (22%), Positives = 124/327 (37%), Gaps = 75/327 (22%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ Y + + + F+ M+ G P V AC+ L +GK V+ +
Sbjct: 477 SWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHAKI 536
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + + + V +L D YAK L S
Sbjct: 537 IKLGIK------------------------------ESIFVGTALSDMYAKSGDLDSSKR 566
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +++ V+W AM+ G A GF EE L ++M I + PN + +L AC+
Sbjct: 567 VFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDM--ISAGITPNEQTFLAILFACS-- 622
Query: 212 KGVKLGKAIHGYVLRHHIH---LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
H ++ H +H + ACG + + ++ R+G
Sbjct: 623 ---------HSGLVEHAMHYFEMMQACGI------------SPKAKHYTCMVDVLARAGH 661
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPAC---------LKLAALPQGL---GTGSFVWN 316
+ +A DLL + K + ++L AC + A Q L T +V
Sbjct: 662 LAEAEDLLLKI---ESKSEANSWAALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVL- 717
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNL 343
L +MY CG + + ++ +LM NL
Sbjct: 718 -LSNMYASCGKWKDAAEMRILMKGINL 743
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 48/195 (24%)
Query: 203 GVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISA 262
G C V G A + +++R H+ G ++ + +F+ + R VV + +++ A
Sbjct: 134 GAFRDCVSVVGAASPFA-YDFMVREHVK----AGDIVSARRLFDGMPERSVVSYTTMVDA 188
Query: 263 FVRSGQVVDALDLLR-------------------------------DVIVANVKPNTVTI 291
++ G V DA++L R +++ V PN +T+
Sbjct: 189 LMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITL 248
Query: 292 VSVLPACL-----KLAALPQGLGTGSF-------VWNALIDMYGRCGAIQKSRKIFVLMP 339
VSV+ AC+ LA GL S V N+LI +Y R G +R++F M
Sbjct: 249 VSVIKACIGAGEFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEME 308
Query: 340 HKNLVSWNVMISVYG 354
+++VSW ++ VY
Sbjct: 309 VRDVVSWTALLDVYA 323
>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
Length = 864
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 159/346 (45%), Gaps = 58/346 (16%)
Query: 31 CNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
CN M+G+ G E + LF M GV D V+ AC+E+K Y
Sbjct: 321 CN-AMMVGLVRT-GLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGY--------- 369
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
F+G L + C + + SG D D V N+++D Y KC+ L ++
Sbjct: 370 -----FQG----------LQVHC--LAVKSGF----DVDVCVRNAILDLYGKCKALVEAY 408
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F +++Q+D VSWNA++A E+ L+EM +++ M+P+ + VL ACA
Sbjct: 409 LVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEM--LRSGMEPDDFTYGSVLKACAG 466
Query: 211 VKGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSI 259
++ ++ G +HG ++ + L CG + + + +++ +++V WNSI
Sbjct: 467 LQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKLHDRIGGQELVSWNSI 526
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------ 307
IS F + Q +A +++ VKP+ T +VL C LA + G
Sbjct: 527 ISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEM 586
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
LG ++ + L+DMY +CG + S +F + VSWN MI Y
Sbjct: 587 LGD-EYISSTLVDMYAKCGNMPDSLLMFEKARKLDFVSWNAMICGY 631
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 153/345 (44%), Gaps = 56/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ YE+ + M+ G+ PD F V KAC+ L+ G V+
Sbjct: 421 SWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVH--- 477
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
G A I SGL D V+++++D Y KC + +
Sbjct: 478 ------GKA-----------------IKSGL----GLDAFVSSTVVDMYCKCGAITEAQK 510
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+I ++LVSWN++++G++L EE EM + ++P+ + + VL CA +
Sbjct: 511 LHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEM--LDMGVKPDHFTYATVLDTCANL 568
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++LGK IHG +++ + + CG + S +F + D V WN++I
Sbjct: 569 ATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKARKLDFVSWNAMI 628
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----LGTGSFV- 314
+ GQ ++AL++ + ANV PN T V+VL AC + L G L T +
Sbjct: 629 CGYALHGQGLEALEMFERMQRANVVPNHATFVAVLRACSHVGLLDDGCQYFHLMTSRYKL 688
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ ++D+ GR Q++ + MP + V W ++S+
Sbjct: 689 VPQLEHFACMVDILGRSKGPQEALEFIRSMPIEADAVVWKTLLSI 733
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 94/383 (24%), Positives = 172/383 (44%), Gaps = 49/383 (12%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKG 60
+ LG+Q+HA + G+E GS L++++ S+ ++ + F+ M ++
Sbjct: 167 LALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSL----------DDALRFFHGMGER- 215
Query: 61 VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITS 120
+ C + + Y G +++ + ++ G + F C M S
Sbjct: 216 ---NSVSWGAAIAGCVQNEQYTRGMELF---VQMQRLGLGVSQPAYASAFRSCAAMPCLS 269
Query: 121 --------GLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYA 172
+ D +V +++D YAK L + F + ++ + NAM+ G
Sbjct: 270 TARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLV 329
Query: 173 LGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH---- 228
G E L M ++ + + ISLSGV +ACA+VKG G +H ++
Sbjct: 330 RTGLGAEAMQLFQ--FMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVD 387
Query: 229 -------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281
+ L C ++ + VF ++ RD V WN+II+A ++ D + L +++
Sbjct: 388 VCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLR 447
Query: 282 ANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQK 330
+ ++P+ T SVL AC L A+ GLG +FV + ++DMY +CGAI +
Sbjct: 448 SGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITE 507
Query: 331 SRKIFVLMPHKNLVSWNVMISVY 353
++K+ + + LVSWN +IS +
Sbjct: 508 AQKLHDRIGGQELVSWNSIISGF 530
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 103/232 (44%), Gaps = 53/232 (22%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G+ VH I G+ L AF+ S +++++C +W S++
Sbjct: 470 LEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKLHDRIGGQELVSWNSIISG 529
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+++ EE F M+D GV+PDHF V C+ L +GK ++ +I + G+
Sbjct: 530 FSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGD 589
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ L+D++ KCG M +SL+ F K ++
Sbjct: 590 EYISSTLVDMYAKCGNMP----------------DSLL--------------MFEKARKL 619
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
D VSWNAM+ GYAL G E + + M+ + ++ PN + VL AC+ V
Sbjct: 620 DFVSWNAMICGYALHGQGLEALEMFERMQ--RANVVPNHATFVAVLRACSHV 669
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/291 (19%), Positives = 118/291 (40%), Gaps = 25/291 (8%)
Query: 83 VGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYA 141
G+ + M+ F V LL ++ +CG G+F+ M +D + N+++ Y
Sbjct: 37 TGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFDTMPHRDTVSWNTMLTAYV 96
Query: 142 KCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISL 201
+ F + D+VSWN +++GY G L MEM + + + +L
Sbjct: 97 HAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGL--SMEMSRRGVALDRTTL 154
Query: 202 SGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVIC-----------SCSVFNQLST 250
+ +L +C + + LG IH ++ + G + + F+ +
Sbjct: 155 AVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGE 214
Query: 251 RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG--- 307
R+ V W + I+ V++ Q ++L + + + S +C + L
Sbjct: 215 RNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTARQL 274
Query: 308 --------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ V A++D+Y + G + +R+ F+ +PH N+ + N M+
Sbjct: 275 HAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMM 325
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 11/122 (9%)
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ S+F + DVV WN++IS + + G +++ L ++ V + T+ +L +C
Sbjct: 104 AASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVALDRTTLAVLLKSCGG 163
Query: 301 LA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L A+ GL T +AL+DMYG+C ++ + + F M +N VSW
Sbjct: 164 LDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGERNSVSWGAA 223
Query: 350 IS 351
I+
Sbjct: 224 IA 225
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 304 LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L G +FV N L+ MY RCG + +F MPH++ VSWN M++ Y
Sbjct: 46 LVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFDTMPHRDTVSWNTMLTAY 95
>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1064
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/397 (22%), Positives = 175/397 (44%), Gaps = 77/397 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ELG Q+H+ +I +L A++ S L++++ +WT+M+
Sbjct: 506 LELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAG 565
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y + ++ + F M+D+G+R D AC+ L+ + G+ ++
Sbjct: 566 YTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIH---------AQ 616
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
ACV SG D N+L+ Y++C ++ S+ F + +
Sbjct: 617 ACV-----------------SGF----SSDLPFQNALVTLYSRCGKIEESYLAFEQTEAG 655
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D ++WNA+++G+ G EE + + M + + N + + A ++ +K GK
Sbjct: 656 DNIAWNALVSGFQQSGNNEEALRVF--VRMNREGIDNNNFTFGSAVKAASETANMKQGKQ 713
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H + + I + CG + + F ++ST++ V WN+II+A+ + G
Sbjct: 714 VHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGF 773
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GLGTGSFVWN 316
+ALD +I +NV+PN VT+V VL AC + + + GL +
Sbjct: 774 GSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYV 833
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
++DM R G + ++++ MP K + + W ++S
Sbjct: 834 CVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSA 870
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 150/343 (43%), Gaps = 54/343 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W M+ Y +L +F M + + P+ + P + K C L D +G+ ++ +I
Sbjct: 458 WNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQII 517
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F+ NA V L+D++ K G+++ D L+
Sbjct: 518 KTNFQLNAYVCSVLIDMYAKLGKLDTA--------WDILI-------------------- 549
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
+ KD+VSW M+AGY F ++ L +M+ ++ + + L+ ++ACA ++
Sbjct: 550 --RFAGKDVVSWTTMIAGYTQYNFDDKA--LTTFRQMLDRGIRSDEVGLTNAVSACAGLQ 605
Query: 213 GVKLGKAIHGYV-----------LRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+K G+ IH + L + CG + S F Q D + WN+++S
Sbjct: 606 ALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVS 665
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTG--- 311
F +SG +AL + + + N T S + A + A + QG TG
Sbjct: 666 GFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDS 725
Query: 312 -SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ V NALI MY +CG+I + K F+ + KN VSWN +I+ Y
Sbjct: 726 ETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAY 768
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/347 (23%), Positives = 157/347 (45%), Gaps = 59/347 (17%)
Query: 33 WTSM---MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
W M + N++G E+ LF M+ + V P+ V +AC R G +D
Sbjct: 154 WNKMIKELASRNLIG---EVFGLFVRMVSENVTPNEGTFSGVLEAC------RGGSVAFD 204
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
+ I R+ L++ + +V N LID Y++ ++ ++
Sbjct: 205 VVEQIH------------------ARI-----LYQGLRDSTVVCNPLIDLYSRNGFVDLA 241
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F ++ KD SW AM++G + E L +M ++ + P + S VL+AC
Sbjct: 242 RRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVL--GIMPTPYAFSSVLSACK 299
Query: 210 QVKGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNS 258
+++ +++G+ +HG VL+ T G +I + +F+ +S RD V +N+
Sbjct: 300 KIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNT 359
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQG 307
+I+ + G A++L + + + ++P++ T+ S++ AC L G
Sbjct: 360 LINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLG 419
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + + AL+++Y +C I+ + F+ +N+V WNVM+ YG
Sbjct: 420 FASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYG 466
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/396 (20%), Positives = 165/396 (41%), Gaps = 75/396 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMG--------------MYNVL--- 43
+E+G Q+H ++ G ++ + L+ ++ + +++ YN L
Sbjct: 304 LEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLING 363
Query: 44 ----GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
GY E+ + LF M G+ PD + ACS G+ ++ Y + F N
Sbjct: 364 LSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASN 423
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
++ LL+L+ KC +E + +D+ F + + +
Sbjct: 424 NKIEGALLNLYAKCADIE-----------------TALDY-------------FLETEVE 453
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
++V WN ML Y L + +M++ ++ PN + +L C ++ ++LG+
Sbjct: 454 NVVLWNVMLVAYGLLDDLRNSFRIFRQMQI--EEIVPNQYTYPSILKTCIRLGDLELGEQ 511
Query: 220 IHGYVLRHHIHLST-ACGFVICSCSVFNQLST----------RDVVVWNSIISAFVRSGQ 268
IH +++ + L+ C +I + +L T +DVV W ++I+ + +
Sbjct: 512 IHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNF 571
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNA 317
AL R ++ ++ + V + + + AC L AL + G + NA
Sbjct: 572 DDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNA 631
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L+ +Y RCG I++S F + ++WN ++S +
Sbjct: 632 LVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGF 667
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/318 (22%), Positives = 130/318 (40%), Gaps = 56/318 (17%)
Query: 58 DKGVRPDHFVCPKVYKACSELK-DYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM 116
++G+RP+H + + C + G+ ++ ++ + + N C+ L D ++ G +
Sbjct: 77 NRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDL 136
Query: 117 EITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGF 176
+F+EM ++ + +WN M+ A
Sbjct: 137 YGAFKVFDEM------------------------------PERTIFTWNKMIKELASRNL 166
Query: 177 REEVTNLLDEMEMIQTDMQPNTISLSGVLAAC-AQVKGVKLGKAIHGYVLRHHIHLSTAC 235
EV L + M+ ++ PN + SGVL AC + + IH +L + ST
Sbjct: 167 IGEVFGLF--VRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVV 224
Query: 236 -----------GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV 284
GFV + VF+ L +D W ++IS ++ +A+ L D+ V +
Sbjct: 225 CNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGI 284
Query: 285 KPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRK 333
P SVL AC K+ +L G + ++V NAL+ +Y G + +
Sbjct: 285 MPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEH 344
Query: 334 IFVLMPHKNLVSWNVMIS 351
IF M ++ V++N +I+
Sbjct: 345 IFSNMSQRDAVTYNTLIN 362
>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g08820
gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 685
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/395 (21%), Positives = 170/395 (43%), Gaps = 77/395 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
+LGI +H+ ++ CG + LL ++ WT++ Y
Sbjct: 128 KLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGY 187
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G + E ++LF M++ GV+PD + +V AC + D G+ + YM +
Sbjct: 188 TTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEM------ 241
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
EM ++ V +L++ YAKC ++ + F + +KD
Sbjct: 242 ------------------------EMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKD 277
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+V+W+ M+ GYA F +E L ++M+Q +++P+ S+ G L++CA + + LG+
Sbjct: 278 IVTWSTMIQGYASNSFPKEGIELF--LQMLQENLKPDQFSIVGFLSSCASLGALDLGEWG 335
Query: 221 HGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
+ RH I + CG + VF ++ +D+V+ N+ IS ++G V
Sbjct: 336 ISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHV 395
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNA 317
+ + + P+ T + +L C+ + GL + + +
Sbjct: 396 KLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGC 455
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMIS 351
++D++GR G + + ++ MP + N + W ++S
Sbjct: 456 MVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLS 490
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 148/328 (45%), Gaps = 54/328 (16%)
Query: 46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP 105
+ E ++LF + G+ F P V KAC+ ++G D++
Sbjct: 92 FHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHS---------------- 135
Query: 106 LLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWN 165
L +KCG + D SL+ Y+ L +H F +I + +V+W
Sbjct: 136 ---LVVKCG-----------FNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWT 181
Query: 166 AMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI----- 220
A+ +GY G E +L +M ++ ++P++ + VL+AC V + G+ I
Sbjct: 182 ALFSGYTTSGRHREAIDLFKKM--VEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYME 239
Query: 221 ------HGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALD 274
+ +V ++L CG + + SVF+ + +D+V W+++I + + + ++
Sbjct: 240 EMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIE 299
Query: 275 LLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYG 323
L ++ N+KP+ +IV L +C L AL G T F+ NALIDMY
Sbjct: 300 LFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYA 359
Query: 324 RCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+CGA+ + ++F M K++V N IS
Sbjct: 360 KCGAMARGFEVFKEMKEKDIVIMNAAIS 387
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 118/248 (47%), Gaps = 29/248 (11%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
+ L+ +L K YL SH +F I +N+++ G+ E +L +
Sbjct: 49 NLLLKRTLFFRQTKYSYLLFSHTQFPNI-----FLYNSLINGFVNNHLFHETLDLF--LS 101
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTA-------CGF 237
+ + + + + VL AC + KLG +H V++ H + T+ G
Sbjct: 102 IRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGR 161
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ + +F+++ R VV W ++ S + SG+ +A+DL + ++ VKP++ IV VL A
Sbjct: 162 LNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSA 221
Query: 298 CLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
C+ + L G + SFV L+++Y +CG ++K+R +F M K++V+W
Sbjct: 222 CVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTW 281
Query: 347 NVMISVYG 354
+ MI Y
Sbjct: 282 STMIQGYA 289
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 69/158 (43%), Gaps = 22/158 (13%)
Query: 218 KAIHGYVLRHHIHLSTACGFVIC-----------SCSVFNQLSTRDVVVWNSIISAFVRS 266
K IH ++ HH+H T ++ S +F+ ++ ++NS+I+ FV +
Sbjct: 30 KQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLINGFVNN 89
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------W 315
+ LDL + + + T VL AC + ++ G+ S V
Sbjct: 90 HLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAM 149
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+L+ +Y G + + K+F +P +++V+W + S Y
Sbjct: 150 TSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGY 187
>gi|218194384|gb|EEC76811.1| hypothetical protein OsI_14939 [Oryza sativa Indica Group]
Length = 540
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 141/276 (51%), Gaps = 20/276 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W M+ Y YEE + LF+ M V PD + V C+ ++ R GK ++ YM+
Sbjct: 138 WGVMLDCYCQARNYEEALLLFHSMKRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYML 197
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHC 151
+A V L++++ C ME+ L+ + ++D +++ +++ YAK ++++H
Sbjct: 198 VSDALIDAQVSCALMNMYASCADMEMAEKLYNRVSEKDIVLSTTMVYGYAKNGKVEIAHS 257
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ + +KD+VSW+AM+AGYA E NL +M+ ++ +QP+ I++ +L
Sbjct: 258 IFNGMPEKDVVSWSAMIAGYAESSKPMEALNLFHDMQ--RSGVQPDEITMLSIL------ 309
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+G A+ I + + CG + + VFN + ++VV W SII+A G
Sbjct: 310 ---PIGNAL--------IDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRS 358
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
AL L ++ ++PN VT + +L AC + +G
Sbjct: 359 ALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEG 394
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 124/266 (46%), Gaps = 61/266 (22%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D V +L+ YA C ++ + F + +DLV+W ML Y EE L M+
Sbjct: 103 DGFVGTALVRAYAACGRVEDARKVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMK 162
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL----------------------- 225
++ + P+ + ++ VL+ CA + ++ GKAIH Y+L
Sbjct: 163 --RSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDALIDAQVSCALMNMYASCAD 220
Query: 226 ------------RHHIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
I LST G V + S+FN + +DVV W+++I+ + S
Sbjct: 221 MEMAEKLYNRVSEKDIVLSTTMVYGYAKNGKVEIAHSIFNGMPEKDVVSWSAMIAGYAES 280
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCG 326
+ ++AL+L D+ + V+P+ +T++S+LP + NALIDM+ +CG
Sbjct: 281 SKPMEALNLFHDMQRSGVQPDEITMLSILP-----------------IGNALIDMFSKCG 323
Query: 327 AIQKSRKIFVLMPHKNLVSWNVMISV 352
++ + +F MP KN+V+W +I+
Sbjct: 324 SLTLALDVFNAMPQKNVVTWTSIITA 349
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 76/190 (40%), Gaps = 42/190 (22%)
Query: 206 AACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVR 265
A A ++G + G+V + ACG V + VF+ + RD+V W ++ + +
Sbjct: 88 AGAAHGLAFRVGAEVDGFVGTALVRAYAACGRVEDARKVFDGMPDRDLVAWGVMLDCYCQ 147
Query: 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF--VWNALID--- 320
+ +AL L + + V P+ V I +VL C L G S+ V +ALID
Sbjct: 148 ARNYEEALLLFHSMKRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDALIDAQV 207
Query: 321 ------MYGRC-------------------------------GAIQKSRKIFVLMPHKNL 343
MY C G ++ + IF MP K++
Sbjct: 208 SCALMNMYASCADMEMAEKLYNRVSEKDIVLSTTMVYGYAKNGKVEIAHSIFNGMPEKDV 267
Query: 344 VSWNVMISVY 353
VSW+ MI+ Y
Sbjct: 268 VSWSAMIAGY 277
>gi|218193589|gb|EEC76016.1| hypothetical protein OsI_13171 [Oryza sativa Indica Group]
Length = 950
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/373 (24%), Positives = 171/373 (45%), Gaps = 57/373 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY-M 91
+T+M+ + + ++ + +F+ M+ GV P+ V KAC ++ + + M
Sbjct: 213 FTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAM 272
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSH 150
S + N V+ L+ L+++ G + +F+EM+ +D + +L+D YA+ L+ +
Sbjct: 273 KSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGAR 332
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
++ +++ VSW ++A + G +E +L +M+ +PN S VL ACA
Sbjct: 333 RVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYS--QMLADGCRPNISCFSSVLGACAS 390
Query: 211 VKGVKLGKAIHGYVLR----HHIHLSTACGFVICSC------------------------ 242
++ ++ G+ IH L+ +++ +S+A + C C
Sbjct: 391 LQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSL 450
Query: 243 --------------SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288
+F ++ R+V WNSIIS + ++ Q +DAL ++ + P
Sbjct: 451 ISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGE 510
Query: 289 VTIVSVLPACLKLAALPQG---------LGTGS--FVWNALIDMYGRCGAIQKSRKIFVL 337
+T SVL AC L +L G LG FV AL DMY + G + S+++F
Sbjct: 511 ITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYE 570
Query: 338 MPHKNLVSWNVMI 350
MP +N V+W MI
Sbjct: 571 MPKRNDVAWTAMI 583
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 162/345 (46%), Gaps = 26/345 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ + G +E V+L+ M+ G RP+ V AC+ L+D R G+ +++
Sbjct: 345 SWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQT 404
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSH 150
+ + N V L+D++ KC ++ +F + Q +V NSLI Y+ + +
Sbjct: 405 LKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVEAE 464
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F K+ +++ SWN++++GYA R+ + L M+ + P I+ S VL ACA
Sbjct: 465 ELFKKMPARNVASWNSIISGYAQN--RQFIDALKSFHAMLASGQSPGEITFSSVLLACAS 522
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVI-----------CSCSVFNQLSTRDVVVWNSI 259
+ +++GK +H +++ I S G + S VF ++ R+ V W ++
Sbjct: 523 LCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAM 582
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GL 308
I +G +++ L D+I A + PN T +++L AC + G+
Sbjct: 583 IQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQACGI 642
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLV-SWNVMISV 352
+ + ++D+ R G + ++ + + + K+ SW ++S
Sbjct: 643 SPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALLSA 687
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 96/245 (39%), Gaps = 56/245 (22%)
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
+ AM+AG+ L ++ + EM + + PN I+L V+ AC L +I G
Sbjct: 213 FTAMIAGFVLNELPKDALGVFHEM--LSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGL 270
Query: 224 VLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV------- 264
++ + I L G + +F+++ RDVV W +++ +
Sbjct: 271 AMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEG 330
Query: 265 ------------------------RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ G +A+ L ++ +PN SVL AC
Sbjct: 331 ARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACAS 390
Query: 301 LAALPQGL-----------GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L L G FV +ALIDMY +C + ++ IF +P KN+V WN +
Sbjct: 391 LQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSL 450
Query: 350 ISVYG 354
IS Y
Sbjct: 451 ISGYS 455
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/327 (22%), Positives = 124/327 (37%), Gaps = 75/327 (22%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ Y + + + F+ M+ G P V AC+ L +GK V+ +
Sbjct: 477 SWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHAKI 536
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + + + V +L D YAK L S
Sbjct: 537 IKLGIK------------------------------ESIFVGTALSDMYAKSGDLDSSKR 566
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +++ V+W AM+ G A GF EE L ++M I + PN + +L AC+
Sbjct: 567 VFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDM--ISAGITPNEQTFLAILFACS-- 622
Query: 212 KGVKLGKAIHGYVLRHHIH---LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
H ++ H +H + ACG + + ++ R+G
Sbjct: 623 ---------HSGLVEHAMHYFEMMQACGI------------SPKAKHYTCMVDVLARAGH 661
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPAC---------LKLAALPQGL---GTGSFVWN 316
+ +A DLL + K + ++L AC + A Q L T +V
Sbjct: 662 LAEAEDLLLKI---ESKSEANSWAALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVL- 717
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNL 343
L +MY CG + + ++ +LM NL
Sbjct: 718 -LSNMYASCGKWKDAAEMRILMKGINL 743
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 48/195 (24%)
Query: 203 GVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISA 262
G C V G A + +++R H+ G ++ + +F+ + R VV + +++ A
Sbjct: 134 GAFRDCVSVVGAASPFA-YDFMVREHVK----AGDIVSARRLFDGMPERSVVSYTTMVDA 188
Query: 263 FVRSGQVVDALDLLR-------------------------------DVIVANVKPNTVTI 291
++ G V DA++L R +++ V PN +T+
Sbjct: 189 LMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITL 248
Query: 292 VSVLPACL-----KLAALPQGLGTGSF-------VWNALIDMYGRCGAIQKSRKIFVLMP 339
VSV+ AC+ LA GL S V N+LI +Y R G +R++F M
Sbjct: 249 VSVIKACIGAGEFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEME 308
Query: 340 HKNLVSWNVMISVYG 354
+++VSW ++ VY
Sbjct: 309 VRDVVSWTALLDVYA 323
>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Vitis vinifera]
Length = 735
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/352 (24%), Positives = 157/352 (44%), Gaps = 59/352 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ G E + F M ++P+ P K+CS L D G+ +
Sbjct: 119 SWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQQA 178
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ FE D V+++L+D Y+KC L+ +
Sbjct: 179 LIFGFE------------------------------PDLFVSSALVDMYSKCGELRDART 208
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN------TISLSGVL 205
F +I +++VSW +M+ GY L E + ++ + + I++ VL
Sbjct: 209 LFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVL 268
Query: 206 AACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVV 254
+AC++V + + +HG++++ CG + S VF+ ++ RDV+
Sbjct: 269 SACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVI 328
Query: 255 VWNSIISAFVRSGQVVDALDLL-RDVIVANVKPNTVTIVSVLPACLKLAA---------- 303
WNSII+ + ++G +++++ R V + N VT+ +VL AC +
Sbjct: 329 SWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQ 388
Query: 304 -LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ GL + FV ++IDMY +CG ++ +RK F M KN+ SW+ M++ YG
Sbjct: 389 VIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYG 440
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/400 (25%), Positives = 174/400 (43%), Gaps = 84/400 (21%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G Q H ++ G E F+ S L++++ +WTSM+ Y
Sbjct: 171 GRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQ 230
Query: 43 LGYYEEIVNLF--YLMIDKGVRPDHFVC--P----KVYKACSELKDYRVGKDVYDYMISI 94
+ LF +L+ + G D VC P V ACS + + + + V+ ++I
Sbjct: 231 NDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKR 290
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFS 154
FEG D V N+L+D YAKC L VS F
Sbjct: 291 GFEG------------------------------DLGVENTLMDAYAKCGELGVSRRVFD 320
Query: 155 KIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGV 214
+ ++D++SWN+++A YA G E + M + ++ N ++LS VL ACA
Sbjct: 321 GMAERDVISWNSIIAVYAQNGMSTESMEIFHRM-VKDGEINYNAVTLSAVLLACAHSGSQ 379
Query: 215 KLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAF 263
+LGK IH V L ++ + T+ CG V + F+++ ++V W+++++ +
Sbjct: 380 RLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGY 439
Query: 264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTG 311
G +AL++ ++ +A VKPN +T VSVL AC L +G + G
Sbjct: 440 GMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPG 499
Query: 312 SFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ ++D+ GR G ++++ + M + V W ++
Sbjct: 500 VEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALL 539
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 243 SVFNQ-LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
++FN+ + +V WNS+I+ RSG V+AL + ++KPN T + +C L
Sbjct: 106 TLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSAL 165
Query: 302 -----------AALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
AL G FV +AL+DMY +CG ++ +R +F + H+N+VSW MI
Sbjct: 166 LDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMI 225
Query: 351 SVY 353
+ Y
Sbjct: 226 TGY 228
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 84/195 (43%), Gaps = 31/195 (15%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
LG +H +I G+E F+G+ +++++C +W++M+ Y
Sbjct: 380 RLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGY 439
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+ G+ +E + +FY M GV+P++ V ACS G + M S +F+
Sbjct: 440 GMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAM-SHEFDVEP 498
Query: 101 CVKRP--LLDLFIKCGRMEITSGLFEEMD--QDFLVNNSLIDFYAKCRYLKVSHCKFSKI 156
V+ ++DL + G ++ L + M DF+V +L+ CR K + +I
Sbjct: 499 GVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALL---GACRMHK--NVDLGEI 553
Query: 157 KQKDLVSWNAMLAGY 171
+ L + GY
Sbjct: 554 SARKLFELDPKNCGY 568
>gi|302762633|ref|XP_002964738.1| hypothetical protein SELMODRAFT_583 [Selaginella moellendorffii]
gi|300166971|gb|EFJ33576.1| hypothetical protein SELMODRAFT_583 [Selaginella moellendorffii]
Length = 644
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/357 (25%), Positives = 164/357 (45%), Gaps = 62/357 (17%)
Query: 25 QLLEV----FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD 80
QLLE WT+++ Y G + + LF M +G PD +++AC ++
Sbjct: 55 QLLETSVVNLVAWTALIAAYARNGQTKLAIRLFQQMQLEGNSPDRITLVTIFEACGNPEN 114
Query: 81 YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFY 140
GK ++ Y+ +C + D ++ +SLI Y
Sbjct: 115 LEDGKKIHAYL--------SC-------------------------NSDVVLGSSLITMY 141
Query: 141 AKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTIS 200
KC L + F +++ + V+WN+++ + E L EM+Q P+ +
Sbjct: 142 GKCGSLSEACLMFQSMEEWNTVAWNSLMGAFVQHDRVEAAMELY--WEMLQCGFLPSRPT 199
Query: 201 LSGVLAACAQVKGVKLGKAIHGYVLR--HH---------IHLSTACGFVICSCSVFNQLS 249
VLAA + ++ ++ GK +H ++ H +++ CG V+ + VF+++
Sbjct: 200 FLTVLAAISSLESLRHGKLVHDTLVEAGHEDDVVVQTALVNMYGKCGSVVEAVEVFDRMP 259
Query: 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG 309
DV++W+++ISA V + ++L L R + + +PN VT+VSVL AC AL G G
Sbjct: 260 RHDVILWSAVISAHVNCAEYEESLRLFRKMQLEGNRPNNVTLVSVLSACEGPQALETGKG 319
Query: 310 TGS-----------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMISVYG 354
V NA++ MYG+CG+++ + +F +P +N V N +IS+YG
Sbjct: 320 IHECVVEAGYEGDLIVGNAIVSMYGKCGSLEDAWDVFHRVPRRNGVPIGNALISMYG 376
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 101/426 (23%), Positives = 177/426 (41%), Gaps = 104/426 (24%)
Query: 1 MELGIQVHAHL-----IVCGVELCAFLGS-----------QLLEVFCN--WTSMMGMYNV 42
+E G ++HA+L +V G L G Q +E + W S+MG +
Sbjct: 115 LEDGKKIHAYLSCNSDVVLGSSLITMYGKCGSLSEACLMFQSMEEWNTVAWNSLMGAFVQ 174
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
E + L++ M+ G P V A S L+ R GK V+D ++ E + V
Sbjct: 175 HDRVEAAMELYWEMLQCGFLPSRPTFLTVLAAISSLESLRHGKLVHDTLVEAGHEDDVVV 234
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+ L++++ KCG + +F+ M + D++
Sbjct: 235 QTALVNMYGKCGSVVEAVEVFDRM------------------------------PRHDVI 264
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH- 221
W+A+++ + EE L +M++ +PN ++L VL+AC + ++ GK IH
Sbjct: 265 LWSAVISAHVNCAEYEESLRLFRKMQL--EGNRPNNVTLVSVLSACEGPQALETGKGIHE 322
Query: 222 -----GY-----------------------------VLRHH--------IHLSTACGFVI 239
GY V R + I + CG
Sbjct: 323 CVVEAGYEGDLIVGNAIVSMYGKCGSLEDAWDVFHRVPRRNGVPIGNALISMYGRCGSFG 382
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ +F+ ++ RD V WN+++S + D++ L R ++ P+ VTI++VL C
Sbjct: 383 KARDLFDSMAERDAVTWNTMMSVSEQLEHGRDSIQLFRQMLQEGTPPDKVTILTVLNVCA 442
Query: 300 KLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
L AL +G L + NA+++MY +CG+ ++R+IF +M ++ VSWN
Sbjct: 443 SLPALQEGKAICAWLDHTPLSANQMIGNAILNMYAKCGSRDEARRIFSVMQGRDAVSWNA 502
Query: 349 MISVYG 354
+I YG
Sbjct: 503 LIGAYG 508
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/354 (22%), Positives = 155/354 (43%), Gaps = 44/354 (12%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W++++ + YEE + LF M +G RP++ V AC + GK +++ ++
Sbjct: 266 WSAVISAHVNCAEYEESLRLFRKMQLEGNRPNNVTLVSVLSACEGPQALETGKGIHECVV 325
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ--DFLVNNSLIDFYAKCRYLKVSH 150
+EG+ V ++ ++ KCG +E +F + + + N+LI Y +C +
Sbjct: 326 EAGYEGDLIVGNAIVSMYGKCGSLEDAWDVFHRVPRRNGVPIGNALISMYGRCGSFGKAR 385
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM----EMIQTDMQPNTISLSGVLA 206
F + ++D V+WN M++ E++ + D + +M+Q P+ +++ VL
Sbjct: 386 DLFDSMAERDAVTWNTMMS------VSEQLEHGRDSIQLFRQMLQEGTPPDKVTILTVLN 439
Query: 207 ACAQVKGVKLGKAIHGYVLRHHIHLS-------------TACGFVICSCSVFNQLSTRDV 253
CA + ++ GKAI ++ H LS CG + +F+ + RD
Sbjct: 440 VCASLPALQEGKAICAWL--DHTPLSANQMIGNAILNMYAKCGSRDEARRIFSVMQGRDA 497
Query: 254 VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF 313
V WN++I A+ + A + + + + P+ VT ++L C L G F
Sbjct: 498 VSWNALIGAYGSYSRGRYAFQIFQAMQLEGSTPDAVTFTTILSVCSHGGLL--GEAVKWF 555
Query: 314 VW--------------NALIDMYGRCGAIQKSRKIFVLMPH-KNLVSWNVMISV 352
W ++D+ GR G + ++ ++ MP + + W ++S
Sbjct: 556 RWMREDYYVEAETGHYGCIVDLLGRLGRVPEAEEVAEKMPAGTDPIVWTTLLSA 609
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 125/248 (50%), Gaps = 24/248 (9%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK---DLVSWNAMLAGYALGGFREEVTNLL 184
QD +V N LI Y KC L + F ++ + +LV+W A++A YA G + L
Sbjct: 28 QDPVVGNWLIQMYLKCGSLIDASQVFYQLLETSVVNLVAWTALIAAYARNGQTKLAIRLF 87
Query: 185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH--------IHLSTACG 236
+M++ P+ I+L + AC + ++ GK IH Y+ + I + CG
Sbjct: 88 QQMQL--EGNSPDRITLVTIFEACGNPENLEDGKKIHAYLSCNSDVVLGSSLITMYGKCG 145
Query: 237 FVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296
+ +C +F + + V WNS++ AFV+ +V A++L +++ P+ T ++VL
Sbjct: 146 SLSEACLMFQSMEEWNTVAWNSLMGAFVQHDRVEAAMELYWEMLQCGFLPSRPTFLTVLA 205
Query: 297 ACLKLAALPQG-------LGTGS----FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
A L +L G + G V AL++MYG+CG++ ++ ++F MP +++
Sbjct: 206 AISSLESLRHGKLVHDTLVEAGHEDDVVVQTALVNMYGKCGSVVEAVEVFDRMPRHDVIL 265
Query: 346 WNVMISVY 353
W+ +IS +
Sbjct: 266 WSAVISAH 273
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 85/172 (49%), Gaps = 22/172 (12%)
Query: 204 VLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQL---S 249
+L C++ K + G+ IH + R I + CG +I + VF QL S
Sbjct: 1 LLRQCSRSKDLARGRQIHASIARSSAPQDPVVGNWLIQMYLKCGSLIDASQVFYQLLETS 60
Query: 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG 309
++V W ++I+A+ R+GQ A+ L + + + P+ +T+V++ AC L G
Sbjct: 61 VVNLVAWTALIAAYARNGQTKLAIRLFQQMQLEGNSPDRITLVTIFEACGNPENLEDGKK 120
Query: 310 TGSF--------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
++ + ++LI MYG+CG++ ++ +F M N V+WN ++ +
Sbjct: 121 IHAYLSCNSDVVLGSSLITMYGKCGSLSEACLMFQSMEEWNTVAWNSLMGAF 172
>gi|222625627|gb|EEE59759.1| hypothetical protein OsJ_12247 [Oryza sativa Japonica Group]
Length = 950
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/373 (24%), Positives = 171/373 (45%), Gaps = 57/373 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY-M 91
+T+M+ + + ++ + +F+ M+ GV P+ V KAC ++ + + M
Sbjct: 213 FTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAM 272
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSH 150
S + N V+ L+ L+++ G + +F+EM+ +D + +L+D YA+ L+ +
Sbjct: 273 KSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGAR 332
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
++ +++ VSW ++A + G +E +L +M+ +PN S VL ACA
Sbjct: 333 RVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYS--QMLADGCRPNISCFSSVLGACAS 390
Query: 211 VKGVKLGKAIHGYVLR----HHIHLSTACGFVICSC------------------------ 242
++ ++ G+ IH L+ +++ +S+A + C C
Sbjct: 391 LQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSL 450
Query: 243 --------------SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288
+F ++ R+V WNSIIS + ++ Q +DAL ++ + P
Sbjct: 451 ISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGE 510
Query: 289 VTIVSVLPACLKLAALPQG---------LGTGS--FVWNALIDMYGRCGAIQKSRKIFVL 337
+T SVL AC L +L G LG FV AL DMY + G + S+++F
Sbjct: 511 ITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYE 570
Query: 338 MPHKNLVSWNVMI 350
MP +N V+W MI
Sbjct: 571 MPKRNDVAWTAMI 583
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 162/345 (46%), Gaps = 26/345 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ + G +E V+L+ M+ G RP+ V AC+ L+D R G+ +++
Sbjct: 345 SWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHNQT 404
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSH 150
+ + N V L+D++ KC ++ +F + Q +V NSLI Y+ + +
Sbjct: 405 LKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVEAE 464
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F K+ +++ SWN++++GYA R+ + L M+ + P I+ S VL ACA
Sbjct: 465 ELFKKMPARNVASWNSIISGYAQN--RQFIDALKSFHAMLASGQSPGEITFSSVLLACAS 522
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVI-----------CSCSVFNQLSTRDVVVWNSI 259
+ +++GK +H +++ I S G + S VF ++ R+ V W ++
Sbjct: 523 LCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAM 582
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GL 308
I +G +++ L D+I A + PN T +++L AC + G+
Sbjct: 583 IQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQACGI 642
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLV-SWNVMISV 352
+ + ++D+ R G + ++ + + + K+ SW ++S
Sbjct: 643 SPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALLSA 687
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 96/245 (39%), Gaps = 56/245 (22%)
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
+ AM+AG+ L ++ + EM + + PN I+L V+ AC L +I G
Sbjct: 213 FTAMIAGFVLNELPKDALGVFHEM--LSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGL 270
Query: 224 VLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV------- 264
++ + I L G + +F+++ RDVV W +++ +
Sbjct: 271 AMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEG 330
Query: 265 ------------------------RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ G +A+ L ++ +PN SVL AC
Sbjct: 331 ARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACAS 390
Query: 301 LAALPQGL-----------GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L L G FV +ALIDMY +C + ++ IF +P KN+V WN +
Sbjct: 391 LQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSL 450
Query: 350 ISVYG 354
IS Y
Sbjct: 451 ISGYS 455
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/327 (22%), Positives = 124/327 (37%), Gaps = 75/327 (22%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ Y + + + F+ M+ G P V AC+ L +GK V+ +
Sbjct: 477 SWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHAKI 536
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + + + V +L D YAK L S
Sbjct: 537 IKLGIK------------------------------ESIFVGTALSDMYAKSGDLDSSKR 566
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +++ V+W AM+ G A GF EE L ++M I + PN + +L AC+
Sbjct: 567 VFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDM--ISAGITPNEQTFLAILFACS-- 622
Query: 212 KGVKLGKAIHGYVLRHHIH---LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
H ++ H +H + ACG + + ++ R+G
Sbjct: 623 ---------HSGLVEHAMHYFEMMQACGI------------SPKAKHYTCMVDVLARAGH 661
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPAC---------LKLAALPQGL---GTGSFVWN 316
+ +A DLL + K + ++L AC + A Q L T +V
Sbjct: 662 LAEAEDLLLKI---ESKSEANSWAALLSACNIYRNKEMGERAAKRLQELDKDNTAGYVL- 717
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNL 343
L +MY CG + + ++ +LM NL
Sbjct: 718 -LSNMYASCGKWKDAAEMRILMKGINL 743
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 48/195 (24%)
Query: 203 GVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISA 262
G C V G A + +++R H+ G ++ + +F+ + R VV + +++ A
Sbjct: 134 GAFRDCVSVVGAASPFA-YDFMVREHVK----AGDIVSARRLFDGMPERSVVSYTTMVDA 188
Query: 263 FVRSGQVVDALDLLR-------------------------------DVIVANVKPNTVTI 291
++ G V DA++L R +++ V PN +T+
Sbjct: 189 LMKRGSVRDAVELYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITL 248
Query: 292 VSVLPACL-----KLAALPQGLGTGSF-------VWNALIDMYGRCGAIQKSRKIFVLMP 339
VSV+ AC+ LA GL S V N+LI +Y R G +R++F M
Sbjct: 249 VSVIKACIGAGEFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEME 308
Query: 340 HKNLVSWNVMISVYG 354
+++VSW ++ VY
Sbjct: 309 VRDVVSWTALLDVYA 323
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 102/370 (27%), Positives = 165/370 (44%), Gaps = 53/370 (14%)
Query: 4 GIQVHAHLIVCGVELCAFL-----GSQLLEVFCN-----WTSMMGMYNVLGYYEEIVNLF 53
G Q + ++ V +CA L QL + + W SM Y Y E+V LF
Sbjct: 128 GFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLF 187
Query: 54 YLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKC 113
+ M +RP+ F P V K+C ++ G+ V+ ++I F GN V L+D++
Sbjct: 188 FQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAG 247
Query: 114 GRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYA 172
G + +F EM +++ + S+I+ Y L + F ++D+V WN M++GY
Sbjct: 248 GTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYI 307
Query: 173 LGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS 232
GG E L EM M NT+ + GY
Sbjct: 308 EGGDMVEARKLFXEMPNRDV-MFWNTV--------------------LKGYATN------ 340
Query: 233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV-ANVKPNTVTI 291
G V +F ++ R++ WN++I + +G + L + ++ ++V PN T+
Sbjct: 341 ---GNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATL 397
Query: 292 VSVLPACLKLAAL-----------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340
V+VL AC +L AL GL +V NAL+DMY +CG I+ + +F M
Sbjct: 398 VTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDT 457
Query: 341 KNLVSWNVMI 350
K+L+SWN +I
Sbjct: 458 KDLISWNTLI 467
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/362 (24%), Positives = 164/362 (45%), Gaps = 47/362 (12%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRP 63
G QVH LI CG F+G+ L++ MY+ G + +F M ++
Sbjct: 218 GEQVHCFLIKCGFRGNPFVGTTLID----------MYSAGGTVGDAYKIFCEMFER---- 263
Query: 64 DHFVCPKVYKACSELKDYRVGKDVYD--YMISIKFEGNACVKRPLLDLFIKCGRMEITSG 121
V S + Y + D+ + + E + + ++ +I+ G M
Sbjct: 264 ------NVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARK 317
Query: 122 LFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEV 180
LF EM ++D + N+++ YA ++ F ++ ++++ SWNA++ GYA G EV
Sbjct: 318 LFXEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEV 377
Query: 181 TNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA-- 234
M + ++D+ PN +L VL+ACA++ + LGK +H Y L+ ++++ A
Sbjct: 378 LGSFKRM-LSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALM 436
Query: 235 -----CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289
CG + + SVF + T+D++ WN++I + DAL+L + A KP+ +
Sbjct: 437 DMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGI 496
Query: 290 TIVSVLPACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFVL 337
T + +L AC + + G + + ++DM R G ++++
Sbjct: 497 TFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAXAFVRK 556
Query: 338 MP 339
MP
Sbjct: 557 MP 558
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 108/239 (45%), Gaps = 22/239 (9%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
+ L+ A + + + F +I ++ WN+M GYA EV L +M+ +
Sbjct: 135 ITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGM- 193
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-----------HHIHLSTACGFVIC 240
D++PN + VL +C ++ + G+ +H ++++ I + +A G V
Sbjct: 194 -DIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGD 252
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL-----RDVIVANVKPNTVTIVSVL 295
+ +F ++ R+VV W S+I+ ++ S +V A L RDV++ N+ + +
Sbjct: 253 AYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDM 312
Query: 296 PACLKL-AALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
KL +P WN ++ Y G ++ +F MP +N+ SWN +I Y
Sbjct: 313 VEARKLFXEMPN---RDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGY 368
>gi|92429671|gb|ABE77204.1| unknown [Sorghum bicolor]
Length = 795
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 133/252 (52%), Gaps = 26/252 (10%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
++QD V SL+D Y KC + + F+K+ + +V+WN M+ GYAL E + D
Sbjct: 253 LEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGGYAL---NERPVDAFD 309
Query: 186 -EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----IHLSTA------ 234
M+M Q ++ +L ACAQ + G+++H YV+R H + L TA
Sbjct: 310 CFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLPHVVLETALLEMYG 369
Query: 235 -CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
G V S +F Q++ + +V WN++I+A++ +A+ L +++ + P+ T+ +
Sbjct: 370 KVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIALFLELLNQPLYPDYFTMTT 429
Query: 294 VLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
V+PA + L ++ Q G G + + NA++ MY RCG I SR+IF MP K+
Sbjct: 430 VVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMNAVMHMYARCGNIVASREIFDKMPGKD 489
Query: 343 LVSWNVMISVYG 354
++SWN +I Y
Sbjct: 490 VISWNTIIIGYA 501
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 87/324 (26%), Positives = 137/324 (42%), Gaps = 55/324 (16%)
Query: 53 FYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIK 112
+ M+D G RPD F P V K C+ G+ + +I +
Sbjct: 108 YRAMLDAGARPDRFTFPVVLKCCARAGALGEGRAAHAAVIKLG----------------- 150
Query: 113 CGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYA 172
+ D NSL+ YAK + + F + +D+VSWN M+ GY
Sbjct: 151 -------------LGADVYTANSLVALYAKLGLVGDAERVFDGMPARDIVSWNTMVDGYV 197
Query: 173 LGGFREEVTNLLDEM-EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH- 230
G EM + +Q +++ + LAAC + LG+ IHGY +RH +
Sbjct: 198 SNGMGALALACFREMNDALQVGH--DSVGVIAALAACCLESALALGREIHGYAIRHGLEQ 255
Query: 231 ----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280
+ CG V + +VF ++ R VV WN +I + + + VDA D +
Sbjct: 256 DVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGGYALNERPVDAFDCFMQMR 315
Query: 281 VANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNALIDMYGRCGAIQ 329
V + VT +++L AC + + G ++V AL++MYG+ G ++
Sbjct: 316 VDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLPHVVLETALLEMYGKVGKVE 375
Query: 330 KSRKIFVLMPHKNLVSWNVMISVY 353
S KIF + K LVSWN MI+ Y
Sbjct: 376 SSEKIFGQITDKTLVSWNNMIAAY 399
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/383 (20%), Positives = 163/383 (42%), Gaps = 76/383 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ LG ++H + I G+E +G+ L++++C W M+G
Sbjct: 238 LALGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGG 297
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y + + + F M G + + + AC++ + G+ V+ Y++ F +
Sbjct: 298 YALNERPVDAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLPH 357
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
++ LL+++ K G++E + +F +I K
Sbjct: 358 VVLETALLEMYGKVGKVESSEKIF------------------------------GQITDK 387
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
LVSWN M+A Y +E L +E++ + P+ +++ V+ A + ++ K
Sbjct: 388 TLVSWNNMIAAYMYMEMYQEAIALF--LELLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQ 445
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H Y+++ +H+ CG ++ S +F+++ +DV+ WN+II + GQ
Sbjct: 446 MHSYIVKLGYGDSTLIMNAVMHMYARCGNIVASREIFDKMPGKDVISWNTIIIGYAIHGQ 505
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACL----------KLAALPQGLGTGSFV--WN 316
AL++ ++ + ++PN T VSVL AC + ++ Q G + +
Sbjct: 506 GKIALEMFDEMKCSGMEPNESTFVSVLTACSVSGLEAEGWKEFNSMQQEYGMIPQIEHYG 565
Query: 317 ALIDMYGRCGAIQKSRKIFVLMP 339
+ D+ GR G +++ + MP
Sbjct: 566 CMTDLLGRAGELREVLRFIENMP 588
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 99/225 (44%), Gaps = 25/225 (11%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+ + + N M+ G+A + L M+ +P+ + VL CA+
Sbjct: 77 FAGVTRPGAFLHNVMIRGFADADL--PLDALAAYRAMLDAGARPDRFTFPVVLKCCARAG 134
Query: 213 GVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ G+A H V++ + L G V + VF+ + RD+V WN+++
Sbjct: 135 ALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVFDGMPARDIVSWNTMVD 194
Query: 262 AFVRSGQVVDALDLLRDVIVA-NVKPNTVTIVSVLPACLKLAALP-----------QGLG 309
+V +G AL R++ A V ++V +++ L AC +AL GL
Sbjct: 195 GYVSNGMGALALACFREMNDALQVGHDSVGVIAALAACCLESALALGREIHGYAIRHGLE 254
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V +L+DMY +CG + + +F MP + +V+WN MI Y
Sbjct: 255 QDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGGYA 299
>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Brachypodium distachyon]
Length = 940
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/395 (24%), Positives = 172/395 (43%), Gaps = 73/395 (18%)
Query: 1 MELGIQVHAHLIVCGVEL-------------CAFLGSQLL-------EVFCNWTSMMGMY 40
+ LG ++HA L+ G E+ C + S L + + +W SM+ Y
Sbjct: 282 LNLGRELHAALLKSGSEVNIQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCY 341
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G Y E + M+ G +PDH + A L GK+V+ Y I + + +
Sbjct: 342 VQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDT 401
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
V L+D+++KC RY++ S F +++ KD
Sbjct: 402 QVGNTLMDMYMKC------------------------------RYIEYSAHVFDRMRIKD 431
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+SW ++ YA E + E + + P I +L AC+ ++ + L K +
Sbjct: 432 HISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMI--GSILEACSGLETILLAKQL 489
Query: 221 HGYVLRHH----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
H Y +R+ I + CG V S +F + +D+V W S+I+ + SG +
Sbjct: 490 HCYAIRNGLLDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLN 549
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------VWNALI 319
+AL L ++ +V+P++V +VS+L A L++L +G F + ++L+
Sbjct: 550 EALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLV 609
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
DMY CG++ + K+F + K++V W MI+ G
Sbjct: 610 DMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATG 644
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/333 (24%), Positives = 153/333 (45%), Gaps = 56/333 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+++ Y + E + +F +G++ D + + +ACS L+ + K ++ Y
Sbjct: 434 SWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYA 493
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + LLDL +K N +ID Y +C + S
Sbjct: 494 I----------RNGLLDLVVK---------------------NRIIDIYGECGEVYHSLK 522
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++QKD+V+W +M+ YA G E L EM+ TD+QP++++L +L A +
Sbjct: 523 MFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQ--STDVQPDSVALVSILGAIGGL 580
Query: 212 KGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ GK +HG+++R + H+ A CG + + VFN + +D+V+W ++I
Sbjct: 581 SSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMI 640
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------L 308
+A G A+DL + ++ V P+ V+ +++L AC + +G L
Sbjct: 641 NATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRL 700
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK 341
+ ++D+ GR G +++ + MP K
Sbjct: 701 EPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLK 733
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 83/346 (23%), Positives = 155/346 (44%), Gaps = 58/346 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ G + + ++LF M + + + V + C+EL +G++++ +
Sbjct: 233 SWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAAL 292
Query: 92 ISIKFEGN-ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ E N C LL ++ KCGR++ +F E+D
Sbjct: 293 LKSGSEVNIQC--NALLVMYTKCGRVDSALRVFREID----------------------- 327
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+KD +SWN+ML+ Y G E + EM++ QP+ + + +A
Sbjct: 328 -------EKDYISWNSMLSCYVQNGLYAEAIEFIS--EMLRGGFQPDHACIVSLSSAVGH 378
Query: 211 VKGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSI 259
+ + GK +H Y ++ + T C ++ S VF+++ +D + W +I
Sbjct: 379 LGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTI 438
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGL 308
I+ + +S + ++AL++ R+ +K + + I S+L AC L A+ GL
Sbjct: 439 ITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGL 498
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V N +ID+YG CG + S K+F + K++V+W MI+ Y
Sbjct: 499 -LDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYA 543
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 94/398 (23%), Positives = 168/398 (42%), Gaps = 78/398 (19%)
Query: 4 GIQVHAHLIVCGVELC--AFLGSQLLEVFC---------------------NWTSMMGMY 40
G+QVHAH + G FL ++LL ++ +W +++G Y
Sbjct: 77 GVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAY 136
Query: 41 NVLGYYEEIVNLFYLM---IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
G E + ++ M GV PD V KA D R G +V+ + +
Sbjct: 137 LSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLD 196
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
+ V L+ ++ KCG ++ +FE M
Sbjct: 197 RSTFVANALIAMYAKCGILDSAMRVFELMHDG---------------------------- 228
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+D+ SWN+M++G G + +L M+ M N+ + GVL C ++ + LG
Sbjct: 229 -RDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSM--NSYTTVGVLQVCTELAQLNLG 285
Query: 218 KAIHGYVLRHHIHLS----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
+ +H +L+ ++ T CG V + VF ++ +D + WNS++S +V++G
Sbjct: 286 RELHAALLKSGSEVNIQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNG 345
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWN 316
+A++ + +++ +P+ IVS+ A L A+ Q L + + V N
Sbjct: 346 LYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGN 405
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L+DMY +C I+ S +F M K+ +SW +I+ Y
Sbjct: 406 TLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYA 443
>gi|449456661|ref|XP_004146067.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
chloroplastic-like [Cucumis sativus]
Length = 793
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 128/246 (52%), Gaps = 25/246 (10%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V N+LI Y++C + S F + +KD+VSWN M++ + G +E L EM+ +
Sbjct: 327 VMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMK--K 384
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS----------TACGFVICS 241
D+ ++++++ +L+A + ++ +GK HGY+LR+ I G + +
Sbjct: 385 QDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGMDSYLIDMYAKSGLIEAA 444
Query: 242 CSVFNQLST--RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC- 298
+VF + + RD WNS++S + ++G V A +LR ++ V PN VT+ S+LPAC
Sbjct: 445 QNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACN 504
Query: 299 ----------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
L ++ L FV ALIDMY + G+I + +F K++V+++
Sbjct: 505 PSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYST 564
Query: 349 MISVYG 354
MI YG
Sbjct: 565 MILGYG 570
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 76/335 (22%), Positives = 155/335 (46%), Gaps = 58/335 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ + G +E + LFY M + + D + A S+L++ +GK + Y+
Sbjct: 358 SWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYL 417
Query: 92 I--SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
+ I+FEG + L+D++ K G +E +FE+ S
Sbjct: 418 LRNGIQFEG---MDSYLIDMYAKSGLIEAAQNVFEK---------------------SFS 453
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
H ++D +WN+M++GY G ++ +L +M+ + PN ++L+ +L AC
Sbjct: 454 H-------ERDQATWNSMMSGYTQNGLVDQAFLIL--RQMLDQKVMPNVVTLASILPACN 504
Query: 210 QVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ GK +HG+ +R+ I + + G + + +VF++ + + +V +++
Sbjct: 505 PSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYST 564
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG---TGSFVW 315
+I + + G AL + + + ++P+ VT+V+VL AC + +GL + V+
Sbjct: 565 MILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFESMRTVY 624
Query: 316 N---------ALIDMYGRCGAIQKSRKIFVLMPHK 341
N + DM GR G + K+ + + + K
Sbjct: 625 NIQPSTEHFCCVADMLGRAGRVDKAYEFVIGLGEK 659
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/318 (24%), Positives = 139/318 (43%), Gaps = 44/318 (13%)
Query: 61 VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITS 120
V+ D + V KAC++ ++ VGK V+ + + + V LL+++ C
Sbjct: 68 VKCDSYTYSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSST---- 123
Query: 121 GLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEV 180
+ ++ Y++C ++ F ++++ +V+WN ++A Y E
Sbjct: 124 ----------TPDGKMVSGYSRCDLVRKV---FDTMRKRTVVAWNTLIAWYVRTERYAEA 170
Query: 181 TNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG-------------YVLRH 227
M ++ ++P+ +S V A + + K +HG YV+
Sbjct: 171 VKQFSMM--MKIGIKPSPVSFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSS 228
Query: 228 HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA-NVKP 286
I + G + + VF+ R+ VWN++ISAFV++ ++ + L + + +
Sbjct: 229 AIFMYAELGCLEFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAI 288
Query: 287 NTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIF 335
+ VT++S + A L +FV NALI MY RC +I S KIF
Sbjct: 289 DEVTLLSAISAASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIF 348
Query: 336 VLMPHKNLVSWNVMISVY 353
MP K++VSWN MIS +
Sbjct: 349 DNMPEKDVVSWNTMISAF 366
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/345 (22%), Positives = 153/345 (44%), Gaps = 54/345 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +++ Y Y E V F +M+ G++P V+ A S L D++
Sbjct: 154 WNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSLGDFK---------- 203
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
NA V +L +K G E D V +S I YA+ L+ +
Sbjct: 204 ------NANVVHGML---VKLG---------SEYVNDLYVVSSAIFMYAELGCLEFAKKV 245
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQT-DMQPNTISLSGVLAACAQV 211
F +++ WN M++ + F E L + +++ D + ++L ++A + +
Sbjct: 246 FDNCLERNTEVWNTMISAFVQNNFSLEGIQLF--FQAVESEDAAIDEVTLLSAISAASHL 303
Query: 212 KGVKLGKAIHGYVLRH-----------HIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ +L + +H +V+++ I + + C + S +F+ + +DVV WN++I
Sbjct: 304 QKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMI 363
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW----- 315
SAFV++G +AL L ++ ++ ++VT+ ++L A L G T ++
Sbjct: 364 SAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQ 423
Query: 316 -----NALIDMYGRCGAIQKSRKIF--VLMPHKNLVSWNVMISVY 353
+ LIDMY + G I+ ++ +F ++ +WN M+S Y
Sbjct: 424 FEGMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGY 468
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 105/238 (44%), Gaps = 37/238 (15%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + + V WN ++ G F +E M+ ++ ++ + S VL ACA +
Sbjct: 27 FDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSVLKACADTR 86
Query: 213 GVKLGKAIHGYVLR------HHIHLSTACGFVICSCS------------------VFNQL 248
+ +GKA+H + LR ++ S + +CS + VF+ +
Sbjct: 87 NLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRKVFDTM 146
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG- 307
R VV WN++I+ +VR+ + +A+ ++ +KP+ V+ V+V PA L
Sbjct: 147 RKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSLGDFKNAN 206
Query: 308 ------LGTGS------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ GS +V ++ I MY G ++ ++K+F +N WN MIS +
Sbjct: 207 VVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMISAF 264
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 91/232 (39%), Gaps = 58/232 (25%)
Query: 2 ELGIQVHAHLIVCGVELCA--------FLGSQLLEVFCN--------------WTSMMGM 39
++G Q H +L+ G++ + S L+E N W SMM
Sbjct: 408 DIGKQTHGYLLRNGIQFEGMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSG 467
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G ++ + M+D+ V P+ + AC+ GK ++ + I + N
Sbjct: 468 YTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLDQN 527
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK--FSKIK 157
V L+D++ K G ++H + FSK
Sbjct: 528 VFVATALIDMYSKSG--------------------------------SIAHAENVFSKAN 555
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
+K +V+++ M+ GY G E + M+ ++ +QP+ ++L VL+AC+
Sbjct: 556 EKSIVTYSTMILGYGQHGMGESALFMFHRMQ--KSGIQPDAVTLVAVLSACS 605
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 26/136 (19%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN--VKPNTVTIVSVLPACLKL 301
+F+ L V+WN+II V + +AL ++ ++ VK ++ T SVL AC
Sbjct: 26 LFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSVLKACADT 85
Query: 302 AALPQG-----------LGTGSFVWNALIDMYGRCGAIQKS-------------RKIFVL 337
L G + V+N+L++MY C + RK+F
Sbjct: 86 RNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRKVFDT 145
Query: 338 MPHKNLVSWNVMISVY 353
M + +V+WN +I+ Y
Sbjct: 146 MRKRTVVAWNTLIAWY 161
>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 891
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 130/245 (53%), Gaps = 20/245 (8%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
Q ++ L++ YA + +S C F +I QKD+ +WN+M++ Y G E ++
Sbjct: 149 QSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQL 208
Query: 188 EMIQTDMQPNTISLSGVLAACAQ-VKG-------VKLGKAIHGYVLRHHIHLSTACGFVI 239
++ ++++P+ + VL AC V G KLG + +V IH+ + GF
Sbjct: 209 LLV-SEIRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTG 267
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ S+F+ + RD+ WN++IS +++G ALD+L ++ + +K N VT+VS+LP C
Sbjct: 268 IARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCP 327
Query: 300 KLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
+L + GL FV NALI+MY + G ++ +RK F M ++VSWN
Sbjct: 328 QLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNS 387
Query: 349 MISVY 353
+I+ Y
Sbjct: 388 IIAAY 392
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/393 (24%), Positives = 170/393 (43%), Gaps = 80/393 (20%)
Query: 7 VHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNVLGY 45
+HA L+V G F+ ++L+ ++ N W SM+ Y G+
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGH 197
Query: 46 YEEIVNLFY-LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
+ E + FY L++ +RPD + P V KAC L D G+ ++ + + F+ N V
Sbjct: 198 FHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFVAA 254
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
L+ ++ + G I LF+ D F +D+ SW
Sbjct: 255 SLIHMYSRFGFTGIARSLFD--DMPF----------------------------RDMGSW 284
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
NAM++G G + ++LDEM + M N +++ +L C Q+ + IH YV
Sbjct: 285 NAMISGLIQNGNAAQALDVLDEMRLEGIKM--NFVTVVSILPVCPQLGDISTAMLIHLYV 342
Query: 225 LRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
++H I++ G + + F Q+ DVV WNSII+A+ ++ V A
Sbjct: 343 IKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAH 402
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----W--------NALIDM 321
+ + +P+ +T+VS+ + F+ W NA++DM
Sbjct: 403 GFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDM 462
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
Y + G + + K+F ++P K+++SWN +I+ Y
Sbjct: 463 YAKLGLLDSAHKVFEIIPVKDVISWNTLITGYA 495
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 128/253 (50%), Gaps = 26/253 (10%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
++ D V+N+LI+ YAK L+ + F ++ D+VSWN+++A Y
Sbjct: 347 LEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFV 406
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH------------IHLST 233
+M++ QP+ ++L + + AQ + K +++HG+++R + +
Sbjct: 407 KMQL--NGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYA 464
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI-VANVKPNTVTIV 292
G + + VF + +DV+ WN++I+ + ++G +A+++ + + + PN T V
Sbjct: 465 KLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWV 524
Query: 293 SVLPACLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLMPHK 341
S+LPA + AL QG+ FV LID+YG+CG + + +F +P +
Sbjct: 525 SILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQE 584
Query: 342 NLVSWNVMISVYG 354
+ V+WN +IS +G
Sbjct: 585 SSVTWNAIISCHG 597
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 110/234 (47%), Gaps = 23/234 (9%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
+D ++ N+++D YAK L +H F I KD++SWN ++ GYA G E + M
Sbjct: 451 EDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMM 510
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-----------ACG 236
E + ++ PN + +L A A V ++ G IHG V++ ++HL CG
Sbjct: 511 EECK-EIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCG 569
Query: 237 FVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296
++ + S+F Q+ V WN+IIS G L L +++ VKP+ VT VS+L
Sbjct: 570 RLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLS 629
Query: 297 ACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
AC + + G+ + ++D+ GR G ++ + MP
Sbjct: 630 ACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMP 683
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 87/197 (44%), Gaps = 22/197 (11%)
Query: 165 NAMLAGYALGGFREEVT-NLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
+ + Y LG EE+ N L + S A C V GK +
Sbjct: 105 SPQFSSYGLGNQNEEIDFNFLFDS------------STKTPFAKCLHALLVVAGKVQSIF 152
Query: 224 VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALD-LLRDVIVA 282
+ ++L G V S F+Q+ +DV WNS+ISA+V +G +A+ + ++V+
Sbjct: 153 ISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVS 212
Query: 283 NVKPNTVTIVSVLPACLKLA--------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKI 334
++P+ T VL AC L A G FV +LI MY R G +R +
Sbjct: 213 EIRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSL 272
Query: 335 FVLMPHKNLVSWNVMIS 351
F MP +++ SWN MIS
Sbjct: 273 FDDMPFRDMGSWNAMIS 289
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 66/151 (43%), Gaps = 29/151 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
++ G+++H +I + L F+ + L++V+ W +++
Sbjct: 536 LQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISC 595
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY----DYMISIK 95
+ + G+ E+ + LF M+D+GV+PDH + ACS GK + +Y I
Sbjct: 596 HGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPS 655
Query: 96 FEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126
+ C ++DL + G +E+ ++M
Sbjct: 656 LKHYGC----MVDLLGRAGYLEMAYDFIKDM 682
>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Glycine max]
Length = 752
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 143/301 (47%), Gaps = 32/301 (10%)
Query: 76 SELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNS 135
SE+ +VG D + + I++K ++ + + G+ T + + D+ V N+
Sbjct: 247 SEMWISKVGYDSHTFAIALKASADSSL--------LHHGKAIHTQTIKQGFDESSFVINT 298
Query: 136 LIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ 195
L Y KC F K+K D+VSW ++ Y G E M ++++
Sbjct: 299 LATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFKRMR--KSNVS 356
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSV 244
PN + + V++ACA + K G+ IHG+VLR + L + G + + V
Sbjct: 357 PNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASLV 416
Query: 245 FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL 304
F+ ++ +D++ W++II+ + + G +A D L + KPN + SVL C +A L
Sbjct: 417 FHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALL 476
Query: 305 PQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
QG + + V +ALI MY +CG+++++ KIF M N++SW MI+ Y
Sbjct: 477 EQGKQVHAHVLCIGIDHEAMVHSALISMYSKCGSVEEASKIFNGMKINNIISWTAMINGY 536
Query: 354 G 354
Sbjct: 537 A 537
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/343 (23%), Positives = 153/343 (44%), Gaps = 56/343 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+++ Y G E V F M V P+ + V AC+ L + G+ ++ ++
Sbjct: 326 SWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHV 385
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + GL + + V NS++ Y+K LK +
Sbjct: 386 LRL--------------------------GLVDALS----VANSIVTLYSKSGLLKSASL 415
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F I +KD++SW+ ++A Y+ GG+ +E + L M + +PN +LS VL+ C +
Sbjct: 416 VFHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMR--REGPKPNEFALSSVLSVCGSM 473
Query: 212 KGVKLGKAIHGYVL----RHH-------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ GK +H +VL H I + + CG V + +FN + +++ W ++I
Sbjct: 474 ALLEQGKQVHAHVLCIGIDHEAMVHSALISMYSKCGSVEEASKIFNGMKINNIISWTAMI 533
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----LGTGSFV- 314
+ + G +A++L + +KP+ VT + VL AC + G L T +
Sbjct: 534 NGYAEHGYSQEAINLFEKISSVGLKPDYVTFIGVLTACSHAGMVDLGFYYFMLMTNEYQI 593
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ +ID+ R G + ++ + MP + + V W+ ++
Sbjct: 594 SPSKEHYGCIIDLLCRAGRLSEAEHMIRSMPCYTDDVVWSTLL 636
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 78/345 (22%), Positives = 152/345 (44%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMY-NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+WT+++ Y N YE ++ + + G++ D F+ KAC + G+ ++ +
Sbjct: 123 SWTTLIAGYVNASDSYEALILFSNMWVQPGLQRDQFMISVALKACGLGVNICFGELLHGF 182
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ + V L+D+++K G++E CR
Sbjct: 183 SVKSGLINSVFVSSALIDMYMKVGKIE-----------------------QGCRV----- 214
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F K+ ++++VSW A++AG G+ E EM + + +T +++ L A A
Sbjct: 215 --FKKMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIA--LKASAD 270
Query: 211 VKGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSI 259
+ GKAIH ++ S+ CG +F ++ DVV W ++
Sbjct: 271 SSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTL 330
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGL 308
I+ +V+ G+ A++ + + +NV PN T +V+ AC LA L GL
Sbjct: 331 ITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGL 390
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V N+++ +Y + G ++ + +F + K+++SW+ +I+VY
Sbjct: 391 VDALSVANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTIIAVY 435
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 106/234 (45%), Gaps = 29/234 (12%)
Query: 142 KCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISL 201
K RY+ F K+ +D +SW ++AGY E L M +Q +Q + +
Sbjct: 108 KSRYM------FDKMTHRDEISWTTLIAGYVNASDSYEALILFSNM-WVQPGLQRDQFMI 160
Query: 202 SGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLST 250
S L AC + G+ +HG+ ++ + + +S+A G + C VF +++
Sbjct: 161 SVALKACGLGVNICFGELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVFKKMTK 220
Query: 251 RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA-----------CL 299
R+VV W +II+ V +G ++AL ++ ++ V ++ T L A +
Sbjct: 221 RNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAI 280
Query: 300 KLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ QG SFV N L MY +CG ++F M ++VSW +I+ Y
Sbjct: 281 HTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTY 334
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 30/152 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G QVHAH++ G++ A + S L+ ++ +WT+M+
Sbjct: 476 LEQGKQVHAHVLCIGIDHEAMVHSALISMYSKCGSVEEASKIFNGMKINNIISWTAMING 535
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACS-----ELKDYRVGKDVYDYMISI 94
Y GY +E +NLF + G++PD+ V ACS +L Y +Y IS
Sbjct: 536 YAEHGYSQEAINLFEKISSVGLKPDYVTFIGVLTACSHAGMVDLGFYYFMLMTNEYQISP 595
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126
E C+ +DL + GR+ + M
Sbjct: 596 SKEHYGCI----IDLLCRAGRLSEAEHMIRSM 623
>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
Length = 891
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 130/245 (53%), Gaps = 20/245 (8%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
Q ++ L++ YA + +S C F +I QKD+ +WN+M++ Y G E ++
Sbjct: 149 QSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQL 208
Query: 188 EMIQTDMQPNTISLSGVLAACAQ-VKG-------VKLGKAIHGYVLRHHIHLSTACGFVI 239
++ ++++P+ + VL AC V G KLG + +V IH+ + GF
Sbjct: 209 LLV-SEIRPDFYTFPPVLKACGTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTG 267
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ S+F+ + RD+ WN++IS +++G ALD+L ++ + +K N VT+VS+LP C
Sbjct: 268 IARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCP 327
Query: 300 KLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
+L + GL FV NALI+MY + G ++ +RK F M ++VSWN
Sbjct: 328 QLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNS 387
Query: 349 MISVY 353
+I+ Y
Sbjct: 388 IIAAY 392
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 95/393 (24%), Positives = 169/393 (43%), Gaps = 80/393 (20%)
Query: 7 VHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNVLGY 45
+HA L+V G F+ ++L+ ++ N W SM+ Y G+
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGH 197
Query: 46 YEEIVNLFY-LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
+ E + FY L++ +RPD + P V KAC L D G+ ++ + + F+ N V
Sbjct: 198 FHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRRIHCWAFKLGFQWNVFVAA 254
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
L+ ++ + G I LF+ D F +D+ SW
Sbjct: 255 SLIHMYSRFGFTGIARSLFD--DMPF----------------------------RDMGSW 284
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
NAM++G G + ++LDEM + M N +++ +L C Q+ + IH YV
Sbjct: 285 NAMISGLIQNGNAAQALDVLDEMRLEGIKM--NFVTVVSILPVCPQLGDISTAMLIHLYV 342
Query: 225 LRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
++H I++ G + + F Q+ DVV WNSII+A+ ++ V A
Sbjct: 343 IKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAH 402
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----W--------NALIDM 321
+ + +P+ +T+VS+ + F+ W NA++DM
Sbjct: 403 GFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDM 462
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
Y + G + + K+F ++ K+++SWN +I+ Y
Sbjct: 463 YAKLGLLDSAHKVFEIILVKDVISWNTLITGYA 495
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 128/253 (50%), Gaps = 26/253 (10%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
++ D V+N+LI+ YAK L+ + F ++ D+VSWN+++A Y
Sbjct: 347 LEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFV 406
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH------------IHLST 233
+M++ QP+ ++L + + AQ + K +++HG+++R + +
Sbjct: 407 KMQL--NGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYA 464
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI-VANVKPNTVTIV 292
G + + VF + +DV+ WN++I+ + ++G +A+++ + + + PN T V
Sbjct: 465 KLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWV 524
Query: 293 SVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK 341
S+LPA + AL QG L FV LID+YG+CG + + +F +P +
Sbjct: 525 SILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQE 584
Query: 342 NLVSWNVMISVYG 354
+ V+WN +IS +G
Sbjct: 585 SSVTWNAIISCHG 597
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 110/234 (47%), Gaps = 23/234 (9%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
+D ++ N+++D YAK L +H F I KD++SWN ++ GYA G E + M
Sbjct: 451 EDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMM 510
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-----------ACG 236
E + ++ PN + +L A A V ++ G IHG V++ ++HL CG
Sbjct: 511 EECK-EIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCG 569
Query: 237 FVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296
++ + S+F Q+ V WN+IIS G L L +++ VKP+ VT VS+L
Sbjct: 570 RLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLS 629
Query: 297 ACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
AC + + G+ + ++D+ GR G ++ + MP
Sbjct: 630 ACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMP 683
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 87/197 (44%), Gaps = 22/197 (11%)
Query: 165 NAMLAGYALGGFREEVT-NLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
+ + Y LG EE+ N L + S A C V GK +
Sbjct: 105 SPQFSSYGLGNQNEEIDFNFLFDS------------STKTPFAKCLHALLVVAGKVQSIF 152
Query: 224 VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALD-LLRDVIVA 282
+ ++L G V S F+Q+ +DV WNS+ISA+V +G +A+ + ++V+
Sbjct: 153 ISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVS 212
Query: 283 NVKPNTVTIVSVLPACLKLA--------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKI 334
++P+ T VL AC L A G FV +LI MY R G +R +
Sbjct: 213 EIRPDFYTFPPVLKACGTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSL 272
Query: 335 FVLMPHKNLVSWNVMIS 351
F MP +++ SWN MIS
Sbjct: 273 FDDMPFRDMGSWNAMIS 289
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 67/151 (44%), Gaps = 29/151 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
++ G+++H +I + L F+ + L++V+ W +++
Sbjct: 536 LQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISC 595
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY----DYMISIK 95
+ + G+ E+ + LF M+D+GV+PDH + ACS GK + +Y I
Sbjct: 596 HGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPS 655
Query: 96 FEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126
+ C ++DL + G +E+ G ++M
Sbjct: 656 LKHYGC----MVDLLGRAGYLEMAYGFIKDM 682
>gi|302791537|ref|XP_002977535.1| hypothetical protein SELMODRAFT_106750 [Selaginella moellendorffii]
gi|300154905|gb|EFJ21539.1| hypothetical protein SELMODRAFT_106750 [Selaginella moellendorffii]
Length = 545
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/389 (23%), Positives = 163/389 (41%), Gaps = 71/389 (18%)
Query: 32 NWTSMMGMYNVLGY-YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W M+ +Y G+ EE + LF M +G+ P+ + A S + G+ ++
Sbjct: 78 SWNGMISLYAQDGHSREEALELFRRMHGEGLTPNKVTFLAILSAVSGARGLEEGRKIHTQ 137
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ----DFL--------------- 131
++ + G V L+D++ KCG +E F MD+ D +
Sbjct: 138 VVESGYSGELSVGNALIDMYSKCGSLEDARKTFAGMDEKNKPDLVLWTAMIAAYAGHGDY 197
Query: 132 -----------------------VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAML 168
+ N+++ Y KC + + F K+K++D VSW M+
Sbjct: 198 KEAFELFQQMQDQGLKPDKSLVSIGNAIVHMYGKCGNVADARKMFDKMKERDTVSWTTMI 257
Query: 169 AGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH 228
A YA G+ E + M + + P+ ++L VL AC+ V G+ G+ ++ +
Sbjct: 258 AVYAEHGYDREALQIFKVM--LLESVAPDKVTLINVLDACSNVSGLAQGRLVYKQFVESG 315
Query: 229 IH-----LSTACGFVICSC-------SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL 276
H L A + SC +F L+ RDVV WN +I+A+ + G ++L L
Sbjct: 316 AHELDLVLGNAVARMFGSCGSLREAREIFESLAARDVVSWNCLITAYAQHGSFEESLRLF 375
Query: 277 RDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNALIDMYGR 324
R ++ VKP+ VT V VL AC + G + + ++D+ GR
Sbjct: 376 RRMLEECVKPDEVTFVGVLSACSHGGLVADGCQFFVSMVQDYQIPAEEIHYGCMVDLLGR 435
Query: 325 CGAIQKSRKIFVLMP--HKNLVSWNVMIS 351
G + ++ ++ +P N V W ++S
Sbjct: 436 AGRLAEAEELLSRLPCAATNDVMWTSLLS 464
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 118/240 (49%), Gaps = 38/240 (15%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGF-REEVTNLLDEM 187
D +++N+L++ Y KC L+ + F + + D +SWN M++ YA G REE L M
Sbjct: 44 DIVISNALVNMYGKCGALESACEIFHGVPRNDAISWNGMISLYAQDGHSREEALELFRRM 103
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACG 236
+ PN ++ +L+A + +G++ G+ IH V+ I + + CG
Sbjct: 104 H--GEGLTPNKVTFLAILSAVSGARGLEEGRKIHTQVVESGYSGELSVGNALIDMYSKCG 161
Query: 237 FVICSCSVFNQLSTR---DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
+ + F + + D+V+W ++I+A+ G +A +L + + +KP+ ++VS
Sbjct: 162 SLEDARKTFAGMDEKNKPDLVLWTAMIAAYAGHGDYKEAFELFQQMQDQGLKPDK-SLVS 220
Query: 294 VLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ NA++ MYG+CG + +RK+F M ++ VSW MI+VY
Sbjct: 221 --------------------IGNAIVHMYGKCGNVADARKMFDKMKERDTVSWTTMIAVY 260
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 88/184 (47%), Gaps = 26/184 (14%)
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSV 244
P+ ++L L AC + G IH + L+ I +S A CG + +C +
Sbjct: 8 PDRVALIAALGACQDPSRLAAGVGIHSRITEAGLQGDIVISNALVNMYGKCGALESACEI 67
Query: 245 FNQLSTRDVVVWNSIISAFVRSGQV-VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
F+ + D + WN +IS + + G +AL+L R + + PN VT +++L A
Sbjct: 68 FHGVPRNDAISWNGMISLYAQDGHSREEALELFRRMHGEGLTPNKVTFLAILSAVSGARG 127
Query: 304 LPQGLG----------TGSF-VWNALIDMYGRCGAIQKSRKIFVLMPHKN---LVSWNVM 349
L +G +G V NALIDMY +CG+++ +RK F M KN LV W M
Sbjct: 128 LEEGRKIHTQVVESGYSGELSVGNALIDMYSKCGSLEDARKTFAGMDEKNKPDLVLWTAM 187
Query: 350 ISVY 353
I+ Y
Sbjct: 188 IAAY 191
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 11/82 (13%)
Query: 283 NVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKS 331
V P+ V +++ L AC + L G+G S + NAL++MYG+CGA++ +
Sbjct: 5 GVAPDRVALIAALGACQDPSRLAAGVGIHSRITEAGLQGDIVISNALVNMYGKCGALESA 64
Query: 332 RKIFVLMPHKNLVSWNVMISVY 353
+IF +P + +SWN MIS+Y
Sbjct: 65 CEIFHGVPRNDAISWNGMISLY 86
>gi|255552093|ref|XP_002517091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543726|gb|EEF45254.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 606
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 133/276 (48%), Gaps = 56/276 (20%)
Query: 130 FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
LV N LI FY+ L ++ F + +D+VSW +M+ GY+ + + L D M
Sbjct: 293 LLVQNGLIHFYSVHGCLVLARKVFDETPARDVVSWTSMIDGYSTHDYYTDALKLFD--SM 350
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS-----------TACGFV 238
+ +D++PN +++ VL+AC+Q + LGK+IH YV R +++LS CG +
Sbjct: 351 LLSDVEPNEVTMISVLSACSQKGDLSLGKSIHEYVRRKNLNLSVNLMNAILDMYVKCGCL 410
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK------------- 285
+ + +F+ + T+DV W S+++ + ++G++ A D+ NV
Sbjct: 411 VAAREIFDSMGTKDVFSWTSMVNGYAKTGELEIARKFFDDMPKRNVVSWNAMIAGYSQNN 470
Query: 286 ------------------PNTVTIVSVLPACLKLAALPQGL------------GTGSFVW 315
P T+V VL AC +L L G GT +
Sbjct: 471 QPKKAIVLFHHMVGEGLIPIENTLVCVLSACGQLGYLDLGRLIHMYHIERKQKGTSVIIA 530
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
NALIDMY +CG I + ++F MP ++LVSWN MI+
Sbjct: 531 NALIDMYAKCGVIDAAARVFNGMPGRDLVSWNSMIA 566
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 136/275 (49%), Gaps = 15/275 (5%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ Y+ YY + + LF M+ V P+ V ACS+ D +GK +++Y+
Sbjct: 326 SWTSMIDGYSTHDYYTDALKLFDSMLLSDVEPNEVTMISVLSACSQKGDLSLGKSIHEYV 385
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSH 150
+ + +LD+++KCG + +F+ M +D S+++ YAK L+++
Sbjct: 386 RRKNLNLSVNLMNAILDMYVKCGCLVAAREIFDSMGTKDVFSWTSMVNGYAKTGELEIAR 445
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + ++++VSWNAM+AGY+ ++ L M+ + P +L VL+AC Q
Sbjct: 446 KFFDDMPKRNVVSWNAMIAGYSQNNQPKKAIVLFH--HMVGEGLIPIENTLVCVLSACGQ 503
Query: 211 VKGVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ + LG+ IH Y + I + CG + + VFN + RD+V WNS
Sbjct: 504 LGYLDLGRLIHMYHIERKQKGTSVIIANALIDMYAKCGVIDAAARVFNGMPGRDLVSWNS 563
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
+I+A G AL + +I KP+ +T S
Sbjct: 564 MIAACASHGHAKQALLMFGQMIHEGFKPDDITFES 598
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 113/231 (48%), Gaps = 24/231 (10%)
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
++ +H F++I+ + WN M+ G++ + V L +M++ ++ +T S L
Sbjct: 208 IRHAHLLFNQIEYPNTYIWNTMIRGFS--NAKMPVMGLSFFWQMVRERVEMDTRSFVFAL 265
Query: 206 AACAQVKGVKLGKAIH------GY-----VLRHHIHLSTACGFVICSCSVFNQLSTRDVV 254
A Q G++IH G+ V IH + G ++ + VF++ RDVV
Sbjct: 266 KASEQFLTALEGESIHCAIWKIGFPCALLVQNGLIHFYSVHGCLVLARKVFDETPARDVV 325
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV 314
W S+I + DAL L +++++V+PN VT++SVL AC + L G +V
Sbjct: 326 SWTSMIDGYSTHDYYTDALKLFDSMLLSDVEPNEVTMISVLSACSQKGDLSLGKSIHEYV 385
Query: 315 -----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
NA++DMY +CG + +R+IF M K++ SW M++ Y
Sbjct: 386 RRKNLNLSVNLMNAILDMYVKCGCLVAAREIFDSMGTKDVFSWTSMVNGYA 436
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 70/179 (39%), Gaps = 33/179 (18%)
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVF 245
+ MI T + +T +S VLA CA G H ++L F
Sbjct: 178 QAHMIITGLITHTFPVSRVLAFCAL---ADTGDIRHAHLL-------------------F 215
Query: 246 NQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP 305
NQ+ + +WN++I F + V L ++ V+ +T + V L A +
Sbjct: 216 NQIEYPNTYIWNTMIRGFSNAKMPVMGLSFFWQMVRERVEMDTRSFVFALKASEQFLTAL 275
Query: 306 QGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+G +W N LI Y G + +RK+F P +++VSW MI Y
Sbjct: 276 EGESIHCAIWKIGFPCALLVQNGLIHFYSVHGCLVLARKVFDETPARDVVSWTSMIDGY 334
>gi|224120036|ref|XP_002318226.1| predicted protein [Populus trichocarpa]
gi|222858899|gb|EEE96446.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 158/340 (46%), Gaps = 52/340 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y G ++E + +F M +G++P +F P V +C EL+ Y GK V+ ++
Sbjct: 22 WNAMIRGYAFNGPFQECIRMFDEMPQRGLKPHNFTYPYVINSCCELEWYGRGKRVHCEIV 81
Query: 93 SIKFEGNACVKRPLLDLFIKCG-----------RMEITSGLFEEM-DQDFLVNNSLIDFY 140
FE + V L ++++K +++ +F++M + + N +I Y
Sbjct: 82 KSGFESSYAVANSLFNMYLKMPASFDVGLASNCKLDYARKIFDDMCVRPVELWNQMIGKY 141
Query: 141 AKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTIS 200
+K + F + ++D+VSWN+M+ GYA GG L ++M + N IS
Sbjct: 142 VNIGDVKSARELFDIMPERDIVSWNSMILGYAKGGKVANARGLFEKMP------EKNVIS 195
Query: 201 LSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ ++ A A ++ + S F + R+VV WNS+I
Sbjct: 196 WTSMIGAYADTDDLETAR------------------------SFFETMPQRNVVSWNSMI 231
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL----------GT 310
S++ + G+ V++L+L + V P+ T VSVL AC L L G +
Sbjct: 232 SSYAKHGKFVESLNLFVQMQSEGVTPDGYTFVSVLSACSNLGDLEFGKYIHYLSGDLSQS 291
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
V AL +MY +CG + K+ +F+ + +++ WNV+I
Sbjct: 292 EVMVGTALTEMYAQCGDVDKAFAVFIKIGKRDVFCWNVII 331
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 93/382 (24%), Positives = 171/382 (44%), Gaps = 55/382 (14%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNV-------LGYYEEIVNLFYLM 56
G +VH ++ G E + + L ++ M ++V L Y +I +
Sbjct: 73 GKRVHCEIVKSGFESSYAVANSLFNMYLK---MPASFDVGLASNCKLDYARKIFD----- 124
Query: 57 IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM 116
D VRP + K + + D + ++++D M E + ++ + K G++
Sbjct: 125 -DMCVRPVELWNQMIGKYVN-IGDVKSARELFDIMP----ERDIVSWNSMILGYAKGGKV 178
Query: 117 EITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGG 175
GLFE+M + +++ S+I YA L+ + F + Q+++VSWN+M++ YA G
Sbjct: 179 ANARGLFEKMPEKNVISWTSMIGAYADTDDLETARSFFETMPQRNVVSWNSMISSYAKHG 238
Query: 176 FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH---GYVLRHHIHLS 232
E NL +M+ + P+ + VL+AC+ + ++ GK IH G + + + +
Sbjct: 239 KFVESLNLFVQMQ--SEGVTPDGYTFVSVLSACSNLGDLEFGKYIHYLSGDLSQSEVMVG 296
Query: 233 TA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK 285
TA CG V + +VF ++ RDV WN II A G+ +A+ + + +K
Sbjct: 297 TALTEMYAQCGDVDKAFAVFIKIGKRDVFCWNVIIKALALHGRSEEAIKIFLLMRKTGLK 356
Query: 286 PNTVTIVSVLPACLKLAALPQGLGTGSFVWNA----------------LIDMYGRCGAIQ 329
PN T S L AC + + G ++N+ LIDM R G ++
Sbjct: 357 PNDFTFTSALFACSHGGLVEE----GHIIFNSMEKDYKIIPKITHYGCLIDMLCRNGQLE 412
Query: 330 KSRKIFVLMPHKNLVS-WNVMI 350
++ + MP + V+ W ++
Sbjct: 413 EAMLLVEDMPFQPDVAIWGALL 434
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 97/228 (42%), Gaps = 43/228 (18%)
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
++V WNAM+ GYA G +E + DEM Q ++P+ + V+ +C +++ GK
Sbjct: 18 EIVIWNAMIRGYAFNGPFQECIRMFDEMP--QRGLKPHNFTYPYVINSCCELEWYGRGKR 75
Query: 220 IHGYVLRH-------------HIHLSTACGFVICSCS---------VFNQLSTRDVVVWN 257
+H +++ +++L F + S +F+ + R V +WN
Sbjct: 76 VHCEIVKSGFESSYAVANSLFNMYLKMPASFDVGLASNCKLDYARKIFDDMCVRPVELWN 135
Query: 258 SIISAFVRSGQVVDALDLL-----RDVIVAN------VKPNTVTIVSVLPACLKLAALPQ 306
+I +V G V A +L RD++ N K V L +P+
Sbjct: 136 QMIGKYVNIGDVKSARELFDIMPERDIVSWNSMILGYAKGGKVANARGL-----FEKMPE 190
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
W ++I Y ++ +R F MP +N+VSWN MIS Y
Sbjct: 191 ---KNVISWTSMIGAYADTDDLETARSFFETMPQRNVVSWNSMISSYA 235
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 67/167 (40%), Gaps = 56/167 (33%)
Query: 244 VFNQL---STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+F+Q+ S+ ++V+WN++I + +G + + + ++ +KP+ T V+ +C +
Sbjct: 7 IFSQMGHDSSAEIVIWNAMIRGYAFNGPFQECIRMFDEMPQRGLKPHNFTYPYVINSCCE 66
Query: 301 L-----------AALPQGLGTGSFVWNALIDMY------------GRC------------ 325
L + G + V N+L +MY C
Sbjct: 67 LEWYGRGKRVHCEIVKSGFESSYAVANSLFNMYLKMPASFDVGLASNCKLDYARKIFDDM 126
Query: 326 ------------------GAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G ++ +R++F +MP +++VSWN MI Y
Sbjct: 127 CVRPVELWNQMIGKYVNIGDVKSARELFDIMPERDIVSWNSMILGYA 173
>gi|225459429|ref|XP_002284321.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Vitis vinifera]
Length = 700
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/383 (23%), Positives = 178/383 (46%), Gaps = 73/383 (19%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
GY E+ +++F M+ P+ + AC+ LK R+GK ++ + GN V+
Sbjct: 24 GYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKALRLGKAIHAIALKHGIVGNVYVE 83
Query: 104 RPLLDLFIKCGRMEITSGLF-EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---- 158
++D++ KCG + +F + +++ + N +I Y ++ + +++
Sbjct: 84 GSVIDMYSKCGSYDYAEKVFVKAENKNTAMWNEMIAAYVNEGKVEDALGLLRSMQKDGWK 143
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEM------------------------------- 187
D++++N +L+G+A G + + LL EM
Sbjct: 144 PDVITYNTILSGHARNGLKTQAFELLSEMVQMGLKPNVVSFNVLISGFQQSGLSYEALKV 203
Query: 188 --------------EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH----HI 229
E++ M+PN I+++G L ACA + GK IHGY LR+ +I
Sbjct: 204 FRIMQSPSDGCNPNEVLNLSMRPNPITITGALPACADLNLWCQGKEIHGYTLRNGFEPNI 263
Query: 230 HLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
+S+A C + + VF ++ R+ V WN++++ ++ + Q +AL L +++
Sbjct: 264 FVSSALVDMYAKCHDMDSANKVFFRIDGRNTVSWNALMAGYIYNKQPEEALKLFLEMLGE 323
Query: 283 NVKPNTVTIVSVLPACLKLAALPQGLGTGSF------------VWNALIDMYGRCGAIQK 330
++P+++T + + PAC +AA+ G G + + +ALIDMY +CG+I
Sbjct: 324 GLQPSSITFMILFPACGDIAAIRFGRGLHGYAAKCQLDELKNAIASALIDMYAKCGSILD 383
Query: 331 SRKIFVLMPHKNLVSWNVMISVY 353
++ +F K++ WN MIS +
Sbjct: 384 AKSVFDSEVEKDVPLWNAMISAF 406
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 125/272 (45%), Gaps = 51/272 (18%)
Query: 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL 107
E++NL +RP+ AC++L + GK+++ Y + FE N
Sbjct: 218 EVLNL-------SMRPNPITITGALPACADLNLWCQGKEIHGYTLRNGFEPN-------- 262
Query: 108 DLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAM 167
V+++L+D YAKC + ++ F +I ++ VSWNA+
Sbjct: 263 ----------------------IFVSSALVDMYAKCHDMDSANKVFFRIDGRNTVSWNAL 300
Query: 168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH 227
+AGY EE L +EM+ +QP++I+ + AC + ++ G+ +HGY +
Sbjct: 301 MAGYIYNKQPEEALKLF--LEMLGEGLQPSSITFMILFPACGDIAAIRFGRGLHGYAAKC 358
Query: 228 H------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDL 275
I + CG ++ + SVF+ +DV +WN++ISAF G +A +
Sbjct: 359 QLDELKNAIASALIDMYAKCGSILDAKSVFDSEVEKDVPLWNAMISAFSVHGMARNAFAV 418
Query: 276 LRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
+ + + P+ +T VS+L AC + + +G
Sbjct: 419 FVQMELLGILPDHITFVSLLSACARDGLVEEG 450
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 97/203 (47%), Gaps = 24/203 (11%)
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
Q + SWN +++G G+ E+ ++ M D PN I+++ +L AC +K ++LG
Sbjct: 7 QPTVNSWNGIISGCVQNGYLEDALDMFSRMLWYPED--PNIITIASILPACTGLKALRLG 64
Query: 218 KAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
KAIH L+H I + + CG + VF + ++ +WN +I+A+V
Sbjct: 65 KAIHAIALKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFVKAENKNTAMWNEMIAAYVNE 124
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPA----CLKLAALP-------QGLGTGSFVW 315
G+V DAL LLR + KP+ +T ++L LK A GL +
Sbjct: 125 GKVEDALGLLRSMQKDGWKPDVITYNTILSGHARNGLKTQAFELLSEMVQMGLKPNVVSF 184
Query: 316 NALIDMYGRCGAIQKSRKIFVLM 338
N LI + + G ++ K+F +M
Sbjct: 185 NVLISGFQQSGLSYEALKVFRIM 207
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 60/112 (53%), Gaps = 11/112 (9%)
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA---------- 302
V WN IIS V++G + DALD+ ++ PN +TI S+LPAC L
Sbjct: 10 VNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKALRLGKAIHA 69
Query: 303 -ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
AL G+ +V ++IDMY +CG+ + K+FV +KN WN MI+ Y
Sbjct: 70 IALKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFVKAENKNTAMWNEMIAAY 121
>gi|297817672|ref|XP_002876719.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322557|gb|EFH52978.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1005
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 157/345 (45%), Gaps = 55/345 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +++G Y G + ++ M +GV D + P + KAC +L+D R G +++ ++
Sbjct: 130 WNALIGAYVSNGEPASALFIYRNMRVEGVPLDLYSFPVLLKACGKLRDIRSGTELHCMLV 189
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ F F+VN +L+ YAK +L +
Sbjct: 190 KLGFNSTG-----------------------------FIVN-ALVSMYAKTDHLSAAKRL 219
Query: 153 FSKIKQK-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++K D V WN++L+ Y+ G E L EM+M T N+ ++ L AC
Sbjct: 220 FDASQEKGDAVLWNSILSSYSTSGKSLETLQLFREMQM--TGPASNSYTIVSALTACEGF 277
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
KLGK IH VL+ I + CG ++ + + ++ DVV WNS+I
Sbjct: 278 SYAKLGKEIHAAVLKSTHSFEVYVCNALIAMYARCGKMLEAGRILRLMNNADVVTWNSLI 337
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----W- 315
+V++ +AL D+I A KP+ V++ SV+ A +L+ L G+ ++V W
Sbjct: 338 KGYVQNLMYKEALQFFCDMIAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHGWD 397
Query: 316 ------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
N LIDMY +C + F++M K+L+SW +I+ Y
Sbjct: 398 SNLLVGNTLIDMYSKCNLTCYMGRAFLMMHEKDLISWTTIIAGYA 442
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 151/344 (43%), Gaps = 53/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W S++ Y Y+E + F MI G +PD V A L + G +++ Y+
Sbjct: 332 TWNSLIKGYVQNLMYKEALQFFCDMIAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYV 391
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + D + LV N+LID Y+KC
Sbjct: 392 IKHGW------------------------------DSNLLVGNTLIDMYSKCNLTCYMGR 421
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +KDL+SW ++AGYAL E L ++ + M+ + + L +L AC+ +
Sbjct: 422 AFLMMHEKDLISWTTIIAGYALNDCHVEALQLF--RDVAKKRMEIDEMMLGSILRACSVL 479
Query: 212 KGVKLGKAIHGYVLRHH----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
K + + K IH ++LR + + C + + VF + +DVV W S+IS
Sbjct: 480 KSMLIVKEIHCHILRKGLIDTVIQNELVDVYGKCRNMGYASRVFESIKGKDVVSWTSMIS 539
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN----- 316
+ +G +A++L R + + ++V ++ +L A L+AL +G ++
Sbjct: 540 SSALNGNENEAVELFRRMAETGLLADSVALLCILSAAASLSALKKGREIHGYLLRKGFCL 599
Query: 317 ------ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
A++DMY CG +Q ++ +F + K L+ + MI+ YG
Sbjct: 600 EGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYG 643
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/341 (22%), Positives = 147/341 (43%), Gaps = 55/341 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ Y+ G E + LF M G + + AC ++GK+++ ++
Sbjct: 232 WNSILSSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACEGFSYAKLGKEIHAAVL 291
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
V L+ ++ +CG+M + L+NN+
Sbjct: 292 KSTHSFEVYVCNALIAMYARCGKMLEAGRILR------LMNNA----------------- 328
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
D+V+WN+++ GY +E +MI +P+ +SL+ V+AA ++
Sbjct: 329 -------DVVTWNSLIKGYVQNLMYKEALQFF--CDMIAAGHKPDEVSLTSVIAASGRLS 379
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ G +H YV++H I + + C F + +D++ W +II+
Sbjct: 380 NLLAGMELHAYVIKHGWDSNLLVGNTLIDMYSKCNLTCYMGRAFLMMHEKDLISWTTIIA 439
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLGT 310
+ + V+AL L RDV ++ + + + S+L AC L + L +GL
Sbjct: 440 GYALNDCHVEALQLFRDVAKKRMEIDEMMLGSILRACSVLKSMLIVKEIHCHILRKGL-I 498
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ + N L+D+YG+C + + ++F + K++VSW MIS
Sbjct: 499 DTVIQNELVDVYGKCRNMGYASRVFESIKGKDVVSWTSMIS 539
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 86/379 (22%), Positives = 172/379 (45%), Gaps = 77/379 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF--CN-------------------WTSMMGMYNV 42
G+++HA++I G + +G+ L++++ CN WT+++ Y +
Sbjct: 384 GMELHAYVIKHGWDSNLLVGNTLIDMYSKCNLTCYMGRAFLMMHEKDLISWTTIIAGYAL 443
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+ E + LF + K + D + + +ACS LK + K+++ +++
Sbjct: 444 NDCHVEALQLFRDVAKKRMEIDEMMLGSILRACSVLKSMLIVKEIHCHIL---------- 493
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
++ L+D I+ N L+D Y KCR + + F IK KD+V
Sbjct: 494 RKGLIDTVIQ---------------------NELVDVYGKCRNMGYASRVFESIKGKDVV 532
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW +M++ AL G E L M +T + ++++L +L+A A + +K G+ IHG
Sbjct: 533 SWTSMISSSALNGNENEAVELF--RRMAETGLLADSVALLCILSAAASLSALKKGREIHG 590
Query: 223 YVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
Y+LR + + CG + + +VF+++ + ++ + S+I+A+ G
Sbjct: 591 YLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKA 650
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPAC------------LKLAALPQGLGTGSFVWNALI 319
+++L + NV P+ ++ +++L AC LK+ L L + L+
Sbjct: 651 SVELFNKMRHENVSPDHISFLALLYACSHAGLLDEGRRFLKIMELEYKLEPWPEHYVCLV 710
Query: 320 DMYGRCGAIQKSRKIFVLM 338
DM GR + ++ + +M
Sbjct: 711 DMLGRANCVVEAFEFVKMM 729
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 121/264 (45%), Gaps = 34/264 (12%)
Query: 121 GLFEEMDQ-DFLVNNSLIDFYA-------KCRYLKVSHCKFSKIKQKDLVSWNAMLAGYA 172
GL E + D NNS I+ YA K R L F +++ + +WNA++ Y
Sbjct: 80 GLNEAFQRLDVNGNNSPIEAYAYLLELCGKSRALSQEKV-FDEMRDRTAFAWNALIGAYV 138
Query: 173 LGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH----------- 221
G E + L M + + S +L AC +++ ++ G +H
Sbjct: 139 SNG--EPASALFIYRNMRVEGVPLDLYSFPVLLKACGKLRDIRSGTELHCMLVKLGFNST 196
Query: 222 GYVLRHHIHLSTACGFVICSCSVFNQLSTR-DVVVWNSIISAFVRSGQVVDALDLLRDVI 280
G+++ + + + + +F+ + D V+WNSI+S++ SG+ ++ L L R++
Sbjct: 197 GFIVNALVSMYAKTDHLSAAKRLFDASQEKGDAVLWNSILSSYSTSGKSLETLQLFREMQ 256
Query: 281 VANVKPNTVTIVSVLPAC-----------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQ 329
+ N+ TIVS L AC + A L +V NALI MY RCG +
Sbjct: 257 MTGPASNSYTIVSALTACEGFSYAKLGKEIHAAVLKSTHSFEVYVCNALIAMYARCGKML 316
Query: 330 KSRKIFVLMPHKNLVSWNVMISVY 353
++ +I LM + ++V+WN +I Y
Sbjct: 317 EAGRILRLMNNADVVTWNSLIKGY 340
>gi|255562850|ref|XP_002522430.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538315|gb|EEF39922.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 556
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/358 (24%), Positives = 158/358 (44%), Gaps = 54/358 (15%)
Query: 19 CAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL 78
C + + +WT+++ + GY +E + F M V D + KAC+ L
Sbjct: 170 CQIFHAMPIRNVVSWTAIITGFVHAGYSKEGLVYFSQMWRSKVVCDSYTFAIALKACANL 229
Query: 79 KDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLID 138
G+ ++ + E ++ V L ++ KCG+++ S L
Sbjct: 230 GALDHGRQIHCQALKRSLEASSFVANTLATMYNKCGKLDYGSRL---------------- 273
Query: 139 FYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT 198
F K+ +++VSW ++ Y G E M+ I + PN
Sbjct: 274 --------------FEKMTIRNVVSWTMIITTYTQSGQEENALRAFIRMQEI--GVSPND 317
Query: 199 ISLSGVLAACAQVKGVKLGKAIHGYVL-----------RHHIHLSTACGFVICSCSVFNQ 247
+ + V++ CA + + G+ +HG++L I L + CG + + VF +
Sbjct: 318 FTFAAVISGCANLGKTEWGEQLHGHMLCLGLMTFLSVANSVITLYSKCGQLKSASMVFKE 377
Query: 248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ- 306
L+ RDVV W++II+ + + G +A + L + KPN +T+ SVL C +A L Q
Sbjct: 378 LTRRDVVSWSTIIAGYSQGGCAEEAFEYLSRMRREGPKPNELTLASVLSVCGNMAILEQG 437
Query: 307 ----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
GL + + +ALI+MY +CG+I+++ KIF + ++VSW MI+ Y
Sbjct: 438 KQLHAHALHVGLEQTAMIQSALINMYSKCGSIKEASKIFDEAENNDIVSWTAMINGYA 495
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/330 (24%), Positives = 144/330 (43%), Gaps = 64/330 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFL----------------GSQLLEVFC-----NWTSMMGM 39
++ G Q+H + +E +F+ GS+L E +WT ++
Sbjct: 232 LDHGRQIHCQALKRSLEASSFVANTLATMYNKCGKLDYGSRLFEKMTIRNVVSWTMIITT 291
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G E + F M + GV P+ F V C+ L G+ ++ +M+ +
Sbjct: 292 YTQSGQEENALRAFIRMQEIGVSPNDFTFAAVISGCANLGKTEWGEQLHGHMLCL----- 346
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
G M S V NS+I Y+KC LK + F ++ ++
Sbjct: 347 --------------GLMTFLS-----------VANSVITLYSKCGQLKSASMVFKELTRR 381
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSW+ ++AGY+ GG EE L M + +PN ++L+ VL+ C + ++ GK
Sbjct: 382 DVVSWSTIIAGYSQGGCAEEAFEYLSRMR--REGPKPNELTLASVLSVCGNMAILEQGKQ 439
Query: 220 IHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H + L I++ + CG + + +F++ D+V W ++I+ + G
Sbjct: 440 LHAHALHVGLEQTAMIQSALINMYSKCGSIKEASKIFDEAENNDIVSWTAMINGYAEHGC 499
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+A+DL + +KP+ VT + VL AC
Sbjct: 500 RQEAIDLFEKIPRIGLKPDPVTFIGVLTAC 529
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/345 (22%), Positives = 153/345 (44%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMY-NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+WT+++ Y N + E + + + G+R D F+ K C + G+ ++ Y
Sbjct: 81 SWTTIISGYVNAIDTTEALTLFSKMWVVPGLRMDPFILSLALKICGLSLNESYGESLHGY 140
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ F + V L+D+++K F+++ Q +
Sbjct: 141 SVKSDFVDSVFVGSALVDMYMK----------FDKIQQGCQI------------------ 172
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + +++VSW A++ G+ G+ +E L+ +M ++ + ++ + + L ACA
Sbjct: 173 --FHAMPIRNVVSWTAIITGFVHAGYSKE--GLVYFSQMWRSKVVCDSYTFAIALKACAN 228
Query: 211 VKGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSI 259
+ + G+ IH L+ + S+ CG + +F +++ R+VV W I
Sbjct: 229 LGALDHGRQIHCQALKRSLEASSFVANTLATMYNKCGKLDYGSRLFEKMTIRNVVSWTMI 288
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LGT 310
I+ + +SGQ +AL + V PN T +V+ C L G LG
Sbjct: 289 ITTYTQSGQEENALRAFIRMQEIGVSPNDFTFAAVISGCANLGKTEWGEQLHGHMLCLGL 348
Query: 311 GSF--VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+F V N++I +Y +CG ++ + +F + +++VSW+ +I+ Y
Sbjct: 349 MTFLSVANSVITLYSKCGQLKSASMVFKELTRRDVVSWSTIIAGY 393
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 106/243 (43%), Gaps = 25/243 (10%)
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQT- 192
NS + K L+ + F ++ +D +SW +++GY E L +M ++
Sbjct: 52 NSKLKALVKTGCLQDARQMFDEMPHRDEISWTTIISGYVNAIDTTEALTLFSKMWVVPGL 111
Query: 193 DMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICS----------- 241
M P +SL+ L C G+++HGY ++ S G +
Sbjct: 112 RMDPFILSLA--LKICGLSLNESYGESLHGYSVKSDFVDSVFVGSALVDMYMKFDKIQQG 169
Query: 242 CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
C +F+ + R+VV W +II+ FV +G + L + + V ++ T L AC L
Sbjct: 170 CQIFHAMPIRNVVSWTAIITGFVHAGYSKEGLVYFSQMWRSKVVCDSYTFAIALKACANL 229
Query: 302 AALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
AL G L SFV N L MY +CG + ++F M +N+VSW ++I
Sbjct: 230 GALDHGRQIHCQALKRSLEASSFVANTLATMYNKCGKLDYGSRLFEKMTIRNVVSWTMII 289
Query: 351 SVY 353
+ Y
Sbjct: 290 TTY 292
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 98/237 (41%), Gaps = 53/237 (22%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
E G Q+H H++ G+ + + ++ ++ +W++++ Y
Sbjct: 334 EWGEQLHGHMLCLGLMTFLSVANSVITLYSKCGQLKSASMVFKELTRRDVVSWSTIIAGY 393
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+ G EE M +G +P+ V C + GK ++ + + + E
Sbjct: 394 SQGGCAEEAFEYLSRMRREGPKPNELTLASVLSVCGNMAILEQGKQLHAHALHVGLE--- 450
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
Q ++ ++LI+ Y+KC +K + F + + D
Sbjct: 451 ---------------------------QTAMIQSALINMYSKCGSIKEASKIFDEAENND 483
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+VSW AM+ GYA G R+E +L +++ I ++P+ ++ GVL AC+ V LG
Sbjct: 484 IVSWTAMINGYAEHGCRQEAIDLFEKIPRI--GLKPDPVTFIGVLTACSHAGLVDLG 538
Score = 40.8 bits (94), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 21/117 (17%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q+HAH + G+E A + S L+ ++ +WT+M+
Sbjct: 434 LEQGKQLHAHALHVGLEQTAMIQSALINMYSKCGSIKEASKIFDEAENNDIVSWTAMING 493
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKF 96
Y G +E ++LF + G++PD V ACS +G ++ M I +
Sbjct: 494 YAEHGCRQEAIDLFEKIPRIGLKPDPVTFIGVLTACSHAGLVDLGFHYFNSMSKIVY 550
>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
Length = 787
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 158/343 (46%), Gaps = 53/343 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W SM+ + G Y E + F + D ++PD + A L GK+++ Y +
Sbjct: 181 WNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAM 240
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+D + + N+LID Y+KC + +
Sbjct: 241 K------------------------------NWLDSNLRIGNTLIDMYSKCCCVAYAGLV 270
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F K+ KDL+SW ++A YA E LL +++ D+ +T+ + L AC+ ++
Sbjct: 271 FDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDV--DTMMIGSTLLACSGLR 328
Query: 213 GVKLGKAIHGYVLRHH----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISA 262
+ K +HGY L+ I + CG + + +F + +DVV W S+IS
Sbjct: 329 CLSHAKEVHGYTLKRGLSDLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISC 388
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW------- 315
+V +G +AL + + +V+P+++T+VS+L A L+AL +G F++
Sbjct: 389 YVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLE 448
Query: 316 ----NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
N+L+DMY CG+++ + K+F+ K+LV W MI+ YG
Sbjct: 449 GSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYG 491
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/318 (27%), Positives = 147/318 (46%), Gaps = 55/318 (17%)
Query: 60 GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEIT 119
GV D F P V KAC ++D G +++ L IKCG
Sbjct: 5 GVPFDSFTFPCVLKACGVVEDIHRGAEIHG-------------------LIIKCG----- 40
Query: 120 SGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK-DLVSWNAMLAGYALGGFRE 178
D V NSL+ YAKC + + F ++ ++ D+VSWN++++ Y+L G
Sbjct: 41 ------YDSIVFVANSLVSMYAKCNDILGARKLFDRMNERNDVVSWNSIISAYSLNGQCM 94
Query: 179 EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH---------- 228
E L EM+ + + NT +L L AC KLG IH +L+ +
Sbjct: 95 EALGLFREMQ--KAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYVANA 152
Query: 229 -IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
+ + G + + +F++L +D + WNS+I+ F ++G +AL + AN+KP+
Sbjct: 153 LVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPD 212
Query: 288 TVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFV 336
V+++S+L A +L L G L + + N LIDMY +C + + +F
Sbjct: 213 EVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFD 272
Query: 337 LMPHKNLVSWNVMISVYG 354
M +K+L+SW +I+ Y
Sbjct: 273 KMINKDLISWTTVIAAYA 290
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 88/393 (22%), Positives = 172/393 (43%), Gaps = 75/393 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF--CN--------------------WTSMMGMYN 41
G ++H +I CG + F+ + L+ ++ CN W S++ Y+
Sbjct: 29 GAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLFDRMNERNDVVSWNSIISAYS 88
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+ G E + LF M GV + + +AC + ++G +++ ++ +
Sbjct: 89 LNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVY 148
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
V L+ + ++ G+M + +F+E+D +KD
Sbjct: 149 VANALVAMHVRFGKMSYAARIFDELD------------------------------EKDN 178
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
++WN+M+AG+ G E ++ +++P+ +SL +LAA ++ + GK IH
Sbjct: 179 ITWNSMIAGFTQNGLYNEALQFFCGLQ--DANLKPDEVSLISILAASGRLGYLLNGKEIH 236
Query: 222 GYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y +++ I + + C V + VF+++ +D++ W ++I+A+ ++
Sbjct: 237 AYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHT 296
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF----------VWNALID 320
+AL LLR V + +T+ I S L AC L L + + N +ID
Sbjct: 297 EALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLSDLMMQNMIID 356
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+Y CG I + ++F + K++VSW MIS Y
Sbjct: 357 VYADCGNINYATRMFESIKCKDVVSWTSMISCY 389
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 129/287 (44%), Gaps = 44/287 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+++ Y + E + L + KG+ D + ACS L+ K+V+ Y
Sbjct: 281 SWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYT 340
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ KR L DL ++ N +ID YA C + +
Sbjct: 341 L----------KRGLSDL---------------------MMQNMIIDVYADCGNINYATR 369
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F IK KD+VSW +M++ Y G E + M+ +T ++P++I+L +L+A A +
Sbjct: 370 MFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMK--ETSVEPDSITLVSILSAAASL 427
Query: 212 KGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ GK IHG++ R L + CG + + VF ++ +V+W ++I
Sbjct: 428 SALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMI 487
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
+A+ G+ A++L + + P+ +T +++L AC + +G
Sbjct: 488 NAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEG 534
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 75/189 (39%), Gaps = 32/189 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ Y G E + +FYLM + V PD + A + L GK+++ ++
Sbjct: 381 SWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFI 440
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F M + VN SL+D YA C L+ ++
Sbjct: 441 FRKGF-----------------------------MLEGSTVN-SLVDMYACCGSLENAYK 470
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + K LV W M+ Y + G + L ME + P+ I+ +L AC+
Sbjct: 471 VFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIME--DQKLIPDHITFLALLYACSHS 528
Query: 212 KGVKLGKAI 220
+ GK +
Sbjct: 529 GLINEGKRL 537
>gi|357457477|ref|XP_003599019.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488067|gb|AES69270.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 944
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/346 (23%), Positives = 164/346 (47%), Gaps = 57/346 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W++ + GY E++++F +M +G++PD + + C+E+ + +GK ++ Y I
Sbjct: 368 WSAFLSALVETGYPREVLSIFQVMQYEGLKPDKAILSILVSGCTEISNIGLGKIMHCYAI 427
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+M+ D + +L+ Y + +
Sbjct: 428 K------------------------------ADMESDISMVTTLVSMYIRFELFTYAMTL 457
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F++++ KD+V WN ++ G+ G + + +++ + + P++ ++ G+ +ACA +
Sbjct: 458 FNRMQIKDIVVWNTLINGFTKYGDPHLALEMFNRLQL--SGILPDSGTMVGLFSACAIMD 515
Query: 213 GVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLS--TRDVVVWNSI 259
+ LG +HG + IH+ A CG +CS L+ +D V WN +
Sbjct: 516 DLDLGTCLHGGIEKSGFESDIHVKVALMDMYAKCG-SLCSVERLFLLTKHVKDEVSWNVM 574
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG---------- 309
I+ ++ +G +A+ R + + NV+PN VT V++LPA L+ L + +
Sbjct: 575 IAGYLHNGYSNEAISTFRRMKLENVRPNLVTFVTILPAVSYLSILREAMAFHTCIIRMGF 634
Query: 310 -TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + + N+LIDMY +CG ++ S K F M +K+ +SWN M+S Y
Sbjct: 635 LSCTLIGNSLIDMYAKCGQLRYSEKCFHEMENKDTISWNAMLSAYA 680
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 161/345 (46%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +MM Y G Y E + L + M V+ + +E++D GK++Y+Y
Sbjct: 266 SWATMMAGYVKNGCYFEGLQLLHKMRRGNVKMNKVAVVNALLVVAEMRDLEKGKEIYNYA 325
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + + V P++ ++ KCG ++ K R L
Sbjct: 326 LQMGLMSDIVVATPIVCMYAKCGELK------------------------KAREL----- 356
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +DLV+W+A L+ G+ EV ++ M+ ++P+ LS +++ C ++
Sbjct: 357 -FLSLEGRDLVAWSAFLSALVETGYPREVLSIFQVMQY--EGLKPDKAILSILVSGCTEI 413
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICS-----------CSVFNQLSTRDVVVWNSII 260
+ LGK +H Y ++ + + + S ++FN++ +D+VVWN++I
Sbjct: 414 SNIGLGKIMHCYAIKADMESDISMVTTLVSMYIRFELFTYAMTLFNRMQIKDIVVWNTLI 473
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLG 309
+ F + G AL++ + ++ + P++ T+V + AC + L G
Sbjct: 474 NGFTKYGDPHLALEMFNRLQLSGILPDSGTMVGLFSACAIMDDLDLGTCLHGGIEKSGFE 533
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPH-KNLVSWNVMISVY 353
+ V AL+DMY +CG++ ++F+L H K+ VSWNVMI+ Y
Sbjct: 534 SDIHVKVALMDMYAKCGSLCSVERLFLLTKHVKDEVSWNVMIAGY 578
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 159/340 (46%), Gaps = 52/340 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
+ S + Y+ ++ + +NL++ ++ G++PD F V KAC+ D+ G ++Y
Sbjct: 67 YNSFIKAYSKFHHFHKAINLYHTILKIGLKPDKFTFNFVLKACTSALDFHEGVNIYK--- 123
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
I F G C D++I SLID + K L +
Sbjct: 124 DIVFNGLEC------DVYI---------------------GTSLIDMFCKMGCLDNARNV 156
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F K+ KD V WNAM++G + E + M+M + + +S+ + A +++
Sbjct: 157 FDKMPVKDGVCWNAMISGLSQSLNPCEALEMFWRMQM--EGFEVDKVSILNLAPAVSRLG 214
Query: 213 GVKLGKAIHGYVLRHH---------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAF 263
V K+IHGYV+R I + CG V + VF+++ RD V W ++++ +
Sbjct: 215 DVGCCKSIHGYVVRRSICGVVSNSLIDMYCKCGDVHSAQRVFDRMGVRDDVSWATMMAGY 274
Query: 264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGS 312
V++G + L LL + NVK N V +V+ L ++ AL GL +
Sbjct: 275 VKNGCYFEGLQLLHKMRRGNVKMNKVAVVNALLVVAEMRDLEKGKEIYNYALQMGLMSDI 334
Query: 313 FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
V ++ MY +CG ++K+R++F+ + ++LV+W+ +S
Sbjct: 335 VVATPIVCMYAKCGELKKARELFLSLEGRDLVAWSAFLSA 374
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 125/286 (43%), Gaps = 42/286 (14%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +++ + G + +F + G+ PD ++ AC+ + D +G ++ +
Sbjct: 469 WNTLINGFTKYGDPHLALEMFNRLQLSGILPDSGTMVGLFSACAIMDDLDLGTCLHGGIE 528
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
FE + VK L+D++ KCG + LF L H
Sbjct: 529 KSGFESDIHVKVALMDMYAKCGSLCSVERLF----------------------LLTKHV- 565
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
KD VSWN M+AGY G+ E + M++ +++PN ++ +L A + +
Sbjct: 566 ------KDEVSWNVMIAGYLHNGYSNEAISTFRRMKL--ENVRPNLVTFVTILPAVSYLS 617
Query: 213 GVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ A H ++R I + CG + S F+++ +D + WN+++S
Sbjct: 618 ILREAMAFHTCIIRMGFLSCTLIGNSLIDMYAKCGQLRYSEKCFHEMENKDTISWNAMLS 677
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
A+ GQ A+ L + +NV+ ++V+ +SVL AC + +G
Sbjct: 678 AYAMHGQGELAVALFSVMQESNVRVDSVSYISVLSACRHSGLIQEG 723
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/392 (20%), Positives = 160/392 (40%), Gaps = 79/392 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMM-GMYN 41
G+ ++ ++ G+E ++G+ L+++FC W +M+ G+
Sbjct: 118 GVNIYKDIVFNGLECDVYIGTSLIDMFCKMGCLDNARNVFDKMPVKDGVCWNAMISGLSQ 177
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
L E + +F+ M +G D + A S L D K ++ Y++ G
Sbjct: 178 SLNPCEAL-EMFWRMQMEGFEVDKVSILNLAPAVSRLGDVGCCKSIHGYVVRRSICG--V 234
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
V L+D++ KCG + +F+ M +D
Sbjct: 235 VSNSLIDMYCKCGDVHSAQRVFDRMG------------------------------VRDD 264
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSW M+AGY G E LL +M + +++ N +++ L A+++ ++ GK I+
Sbjct: 265 VSWATMMAGYVKNGCYFEGLQLLHKMR--RGNVKMNKVAVVNALLVVAEMRDLEKGKEIY 322
Query: 222 GYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y L+ + + CG + + +F L RD+V W++ +SA V +G
Sbjct: 323 NYALQMGLMSDIVVATPIVCMYAKCGELKKARELFLSLEGRDLVAWSAFLSALVETGYPR 382
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALI 319
+ L + + + +KP+ + ++ C +++ A+ + + + L+
Sbjct: 383 EVLSIFQVMQYEGLKPDKAILSILVSGCTEISNIGLGKIMHCYAIKADMESDISMVTTLV 442
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
MY R + +F M K++V WN +I+
Sbjct: 443 SMYIRFELFTYAMTLFNRMQIKDIVVWNTLIN 474
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 118/263 (44%), Gaps = 46/263 (17%)
Query: 13 VCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVY 72
+C VE FL ++ ++ +W M+ Y GY E ++ F M + VRP+ +
Sbjct: 552 LCSVERL-FLLTKHVKDEVSWNVMIAGYLHNGYSNEAISTFRRMKLENVRPNLVTFVTIL 610
Query: 73 KACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLV 132
A S L R + +I + F + C L+
Sbjct: 611 PAVSYLSILREAMAFHTCIIRMGF--------------LSCT----------------LI 640
Query: 133 NNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQT 192
NSLID YAKC L+ S F +++ KD +SWNAML+ YA+ G E L M+ ++
Sbjct: 641 GNSLIDMYAKCGQLRYSEKCFHEMENKDTISWNAMLSAYAMHGQGELAVALFSVMQ--ES 698
Query: 193 DMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL-RHHIHLST---ACGFVICSC------ 242
+++ +++S VL+AC ++ G I + +HH+ S AC + C
Sbjct: 699 NVRVDSVSYISVLSACRHSGLIQEGWDIFASMCEKHHVEPSMEHYACMVDLLGCAGLFDE 758
Query: 243 --SVFNQLSTR-DVVVWNSIISA 262
S+ N+++T D VW ++++A
Sbjct: 759 VLSLLNKMTTEPDARVWGALLAA 781
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 115/244 (47%), Gaps = 25/244 (10%)
Query: 133 NNSLIDFYAKCRYLKV---SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
NN + C+Y+ H F +IK L+ +N+ + Y+ + NL +
Sbjct: 33 NNHYLKLINSCKYINPLLQIHTHFLQIKNPSLILYNSFIKAYSKFHHFHKAINLYHTI-- 90
Query: 190 IQTDMQPNTISLSGVLAACAQV----KGVKLGKAIHGYVLRHHIHLSTACGFVICSC--- 242
++ ++P+ + + VL AC +GV + K I L +++ T+ + C
Sbjct: 91 LKIGLKPDKFTFNFVLKACTSALDFHEGVNIYKDIVFNGLECDVYIGTSLIDMFCKMGCL 150
Query: 243 ----SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+VF+++ +D V WN++IS +S +AL++ + + + + V+I+++ PA
Sbjct: 151 DNARNVFDKMPVKDGVCWNAMISGLSQSLNPCEALEMFWRMQMEGFEVDKVSILNLAPAV 210
Query: 299 LKLAALPQGLGTGSFV---------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
+L + +V N+LIDMY +CG + ++++F M ++ VSW M
Sbjct: 211 SRLGDVGCCKSIHGYVVRRSICGVVSNSLIDMYCKCGDVHSAQRVFDRMGVRDDVSWATM 270
Query: 350 ISVY 353
++ Y
Sbjct: 271 MAGY 274
>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 104/417 (24%), Positives = 173/417 (41%), Gaps = 88/417 (21%)
Query: 7 VHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNVLGY 45
+HA L+V G F+ ++L+ ++ N W SM+ Y G+
Sbjct: 38 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGH 97
Query: 46 YEEIVNLFY-LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
+ E + FY L++ +RPD + P V KAC L D G+ ++ + + F+ N V
Sbjct: 98 FHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFVAA 154
Query: 105 PLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLI-------------------------- 137
L+ ++ + G I LF++M +D N++I
Sbjct: 155 SLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKM 214
Query: 138 -------------DFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLL 184
D YAK L +H F I KD++SWN ++ GYA G E +
Sbjct: 215 NFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVY 274
Query: 185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST----------- 233
ME + ++ PN + +L A A V ++ G IHG V++ ++HL
Sbjct: 275 KMMEECK-EIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYG 333
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
CG ++ + S+F Q+ V WN+IIS G L L +++ VKP+ VT VS
Sbjct: 334 KCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVS 393
Query: 294 VLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+L AC + + G+ + ++D+ GR G ++ + MP
Sbjct: 394 LLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMP 450
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 121/235 (51%), Gaps = 29/235 (12%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
Q ++ L++ YA + +S C F +I QKD+ +WN+M++ Y G E ++
Sbjct: 49 QSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQL 108
Query: 188 EMIQTDMQPNTISLSGVLAACAQ-VKG-------VKLGKAIHGYVLRHHIHLSTACGFVI 239
++ ++++P+ + VL AC V G KLG + +V IH+ + GF
Sbjct: 109 LLV-SEIRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTG 167
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ S+F+ + RD+ WN++IS +++G ALD+L ++ + +K N VT+VS+LP
Sbjct: 168 IARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILP--- 224
Query: 300 KLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+DMY + G + + K+F ++P K+++SWN +I+ Y
Sbjct: 225 -----------------VFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYA 262
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 22/194 (11%)
Query: 168 LAGYALGGFREEVT-NLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR 226
+ Y LG EE+ N L + + P L +L +V+ + ++
Sbjct: 8 FSSYGLGNQNEEIDFNFLFD----SSTKTPFAKCLHALLVVAGKVQSI--------FIST 55
Query: 227 HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALD-LLRDVIVANVK 285
++L G V S F+Q+ +DV WNS+ISA+V +G +A+ + ++V+ ++
Sbjct: 56 RLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIR 115
Query: 286 PNTVTIVSVLPACLKLA--------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVL 337
P+ T VL AC L A G FV +LI MY R G +R +F
Sbjct: 116 PDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDD 175
Query: 338 MPHKNLVSWNVMIS 351
MP +++ SWN MIS
Sbjct: 176 MPFRDMGSWNAMIS 189
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 66/151 (43%), Gaps = 29/151 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGM 39
++ G+++H +I + L F+ + L++V+ W +++
Sbjct: 303 LQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISC 362
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY----DYMISIK 95
+ + G+ E+ + LF M+D+GV+PDH + ACS GK + +Y I
Sbjct: 363 HGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPS 422
Query: 96 FEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126
+ C ++DL + G +E+ ++M
Sbjct: 423 LKHYGC----MVDLLGRAGYLEMAYDFIKDM 449
>gi|255559826|ref|XP_002520932.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539898|gb|EEF41477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 757
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/348 (28%), Positives = 162/348 (46%), Gaps = 59/348 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNL--FYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVY 88
+W++M+G Y + Y E+ + L F M+ + PD + V KAC+ + +G+ V+
Sbjct: 232 SWSAMIGGY--VQYLEDQIGLQIFQKMLSTSRITPDGVILVSVLKACANSVNITMGRLVH 289
Query: 89 DYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKV 148
+ I GL D D V NSLID Y+KC+
Sbjct: 290 G--------------------------LTICRGL----DSDLFVKNSLIDMYSKCKDAGS 319
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
+ FS++ +++ VSWN++L+G L E LL M ++ + ++L L C
Sbjct: 320 AFEVFSEMPRRNNVSWNSLLSGLILNKKYSEA--LLLVYSMRTEGIEADEVTLVNCLQIC 377
Query: 209 AQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWN 257
KA+H +R I C + + VF++ RDVV+W+
Sbjct: 378 KYFAHPYHCKAVHCATIRRGCESNEIVLNSLIDAYAKCNLIELAWEVFSRTRRRDVVLWS 437
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----LKL------AALPQ 306
++I+ F G+ +A+ + + + PN VTI+++L AC LK AA+ +
Sbjct: 438 TMIAGFAHCGKPDEAIAVFQKMNEGIEVPNAVTIINLLQACSVSAELKRSMWAHGAAIRR 497
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
GL V A++DMY +CG I+ SRK F +P KN+++W+ MI+ YG
Sbjct: 498 GLAAEVAVGTAIVDMYSKCGEIEASRKAFNQIPQKNIITWSTMIAAYG 545
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/346 (24%), Positives = 159/346 (45%), Gaps = 60/346 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRP---DHFVCPKVYKACSELKDYRVGKDVY 88
+WT + + + E+++ +Y + + G+ D + P V KACS L Y GK ++
Sbjct: 29 SWTLRIKELSSNEKWHEVISQYYEITNAGISHHLLDVTLFPPVLKACSYLS-YIDGKCLH 87
Query: 89 DYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKV 148
AC+ + D F G NS+++FY KC L
Sbjct: 88 -----------ACLIKTAFDSFTSIG-------------------NSILNFYIKCGELDT 117
Query: 149 SHCKFSKIKQKDLVSWNAMLAG-YALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
+ F ++ +D VSWN ++ G G E + ++ +PN +L ++ A
Sbjct: 118 AVSVFDSMRSRDSVSWNVLIHGCLDYGALVEGLWQFINAR---VAGFEPNISTLVLLVQA 174
Query: 208 CAQVKGVKLGKAIHGYVLRHHIHLSTA------CGF----VICSCSVFNQLSTRDVVVWN 257
C ++ + G +HGY+++ + S + C + + C+ +F+++ +DV+ W+
Sbjct: 175 CRSLRAKQEGLQLHGYLIQSGLWASWSVQNSFLCMYADVDMDCARILFDEMPEKDVISWS 234
Query: 258 SIISAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVLPACLKLAALP----------- 305
++I +V+ + L + + ++ + + P+ V +VSVL AC +
Sbjct: 235 AMIGGYVQYLEDQIGLQIFQKMLSTSRITPDGVILVSVLKACANSVNITMGRLVHGLTIC 294
Query: 306 QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+GL + FV N+LIDMY +C + ++F MP +N VSWN ++S
Sbjct: 295 RGLDSDLFVKNSLIDMYSKCKDAGSAFEVFSEMPRRNNVSWNSLLS 340
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 120/238 (50%), Gaps = 27/238 (11%)
Query: 127 DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDE 186
+ + +V NSLID YAKC ++++ FS+ +++D+V W+ M+AG+A G +E + +
Sbjct: 399 ESNEIVLNSLIDAYAKCNLIELAWEVFSRTRRRDVVLWSTMIAGFAHCGKPDEAIAVFQK 458
Query: 187 M-EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA----------- 234
M E I+ PN +++ +L AC+ +K HG +R + A
Sbjct: 459 MNEGIEV---PNAVTIINLLQACSVSAELKRSMWAHGAAIRRGLAAEVAVGTAIVDMYSK 515
Query: 235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV 294
CG + S FNQ+ ++++ W+++I+A+ +G +AL LL + +KPN +T +SV
Sbjct: 516 CGEIEASRKAFNQIPQKNIITWSTMIAAYGMNGLAHEALALLAQMKSHEIKPNALTYLSV 575
Query: 295 LPACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFVLMPH 340
L AC + GL + ++ ++DM R G + + ++ +MP
Sbjct: 576 LTACSHGGLVEMGLSVFKSMIQDHGVDPEFEHYSCMVDMLSRAGKLDDAMELIRMMPE 633
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 105/235 (44%), Gaps = 39/235 (16%)
Query: 144 RYLKVSHCKFSKIKQKDLVS---WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTIS 200
R+L S ++ K+L S W+ +++ Y E+TN ++ + P
Sbjct: 20 RFLSTSRLLSWTLRIKELSSNEKWHEVISQYY------EITNAGISHHLLDVTLFPP--- 70
Query: 201 LSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLS 249
VL AC+ + + GK +H +++ T+ CG + + SVF+ +
Sbjct: 71 ---VLKACSYLSYID-GKCLHACLIKTAFDSFTSIGNSILNFYIKCGELDTAVSVFDSMR 126
Query: 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG 309
+RD V WN +I + G +V+ L + VA +PN T+V ++ AC L A +GL
Sbjct: 127 SRDSVSWNVLIHGCLDYGALVEGLWQFINARVAGFEPNISTLVLLVQACRSLRAKQEGLQ 186
Query: 310 TGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ V N+ + MY + +R +F MP K+++SW+ MI Y
Sbjct: 187 LHGYLIQSGLWASWSVQNSFLCMYADVD-MDCARILFDEMPEKDVISWSAMIGGY 240
>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
Length = 897
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 107/399 (26%), Positives = 177/399 (44%), Gaps = 83/399 (20%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC------------------NWTSMMGMYNVL 43
++G+QVH ++ G + GS LL ++ NW S M +
Sbjct: 198 DMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAM--IA 255
Query: 44 GYYE-----EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
G + E + LF M GV + ++++C+ L R+GK+++ + + F
Sbjct: 256 GCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSALRLGKELHSHALKSAFGS 315
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
+ V LD++ KCGRM + M KC
Sbjct: 316 DIIVGTATLDMYAKCGRMADAQKVLSSM--------------PKC--------------- 346
Query: 159 KDLVSWNAMLAGYALG--GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKL 216
L S+NA++ GYA GF+ + L +++T + + I+LSG L ACA ++G
Sbjct: 347 -SLQSYNAIIVGYARSDRGFQALKSFQL----LLKTGLGFDEITLSGALNACASIRGDLE 401
Query: 217 GKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVR 265
G+ +HG ++ +I ++ A C + + +F+ + RD V WN+II+A +
Sbjct: 402 GRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQ 461
Query: 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFV 314
+G + L +I + ++P+ T SVL AC AL G+G SFV
Sbjct: 462 NGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFV 521
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
AL+DMY +CG I+K+ KI K +VSWN +IS +
Sbjct: 522 GAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGF 560
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 151/345 (43%), Gaps = 56/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ G EE + F MI + PD F V KAC+ + G +++ +
Sbjct: 451 SWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRI 510
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I K G M D V +L+D Y KC ++ +
Sbjct: 511 I-------------------KSG-----------MGFDSFVGAALVDMYCKCGMIEKADK 540
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+ +QK +VSWNA+++G++L E+ M ++ + P+ + + VL CA +
Sbjct: 541 IHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRM--LEMGVNPDNFTYAAVLDTCANL 598
Query: 212 KGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSII 260
V LGK IH +++ + + + CG + S +F + RD V WN+++
Sbjct: 599 ATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNRDFVTWNAML 658
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GL 308
+ G +AL L + + NVKPN T VSVL AC + + + GL
Sbjct: 659 CGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMGLVDKGLHYFDVMLSEYGL 718
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
S ++ ++D+ GR G I ++ + MP + + V W ++SV
Sbjct: 719 DPQSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNLLSV 763
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/397 (22%), Positives = 159/397 (40%), Gaps = 75/397 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVL----------------G 44
+ LG ++H+H + +G+ L+++ M VL G
Sbjct: 298 LRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVG 357
Query: 45 YYE-----EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y + + F L++ G+ D AC+ ++ G+ V+ + N
Sbjct: 358 YARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMSN 417
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
CV N+++D Y KC+ L + F ++++
Sbjct: 418 ICVA------------------------------NAILDMYGKCKALAEASDLFDMMERR 447
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D VSWNA++A G EE L MI + M+P+ + VL ACA + + G
Sbjct: 448 DAVSWNAIIAACEQNGNEEET--LAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGME 505
Query: 220 IHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH +++ + + CG + + + ++ + +V WN+IIS F Q
Sbjct: 506 IHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQ 565
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLGTGSFVWNA 317
DA ++ V P+ T +VL C LA + Q L + ++ +
Sbjct: 566 SEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQSDVYICST 625
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L+DMY +CG +Q S+ +F P+++ V+WN M+ Y
Sbjct: 626 LVDMYSKCGNMQDSQLMFEKAPNRDFVTWNAMLCGYA 662
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 153/307 (49%), Gaps = 25/307 (8%)
Query: 71 VYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QD 129
+Y+ CS+ GK + MI FE V L+ ++IKC ++ +F++M +D
Sbjct: 55 IYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKMYLRD 114
Query: 130 FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
+ NS+I YA C + ++ F ++ ++D+VSWN++++G+ G + ++ +EM
Sbjct: 115 VVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVF--LEM 172
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACG------FVIC--- 240
+ + + SL+ VL AC ++ +G +HG V++ G + C
Sbjct: 173 GRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRL 232
Query: 241 --SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
S SVF++L ++ V W+++I+ V++ + V+ L+L +++ V + S+ +C
Sbjct: 233 DDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSC 292
Query: 299 LKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
L+AL G G+ V A +DMY +CG + ++K+ MP +L S+N
Sbjct: 293 AALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYN 352
Query: 348 VMISVYG 354
+I Y
Sbjct: 353 AIIVGYA 359
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 92/401 (22%), Positives = 170/401 (42%), Gaps = 62/401 (15%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNV 42
G Q HA +I CG E F+ + L++++ ++ S++ Y
Sbjct: 68 GKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKMYLRDVVSYNSIISGYAS 127
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFV---------CPKVYKACSELKDYRVGKDVYDYMIS 93
G + FY M ++ V + V C K E+ VG D +
Sbjct: 128 CGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMGRCGVGFDRASLAVV 187
Query: 94 IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKF 153
+K AC D+ ++ + + G D D + ++L+ YAKC+ L S F
Sbjct: 188 LK----ACGALEECDMGVQVHGLVVKFGF----DCDVVTGSALLGMYAKCKRLDDSLSVF 239
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG 213
S++ +K+ VSW+AM+AG E L EM+ + + + + + +CA +
Sbjct: 240 SELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSI--YASLFRSCAALSA 297
Query: 214 VKLGKAIHGYVLRH-----------HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISA 262
++LGK +H + L+ + + CG + + V + + + +N+II
Sbjct: 298 LRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVG 357
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL-----AALPQGLGTGSF---- 313
+ RS + AL + ++ + + +T+ L AC + GL S
Sbjct: 358 YARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMSN 417
Query: 314 --VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
V NA++DMYG+C A+ ++ +F +M ++ VSWN +I+
Sbjct: 418 ICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAA 458
Score = 37.7 bits (86), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 30/150 (20%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEV---------------------FCNWTSMMGMYN 41
LG Q+HA +I ++ ++ S L+++ F W +M+ Y
Sbjct: 603 LGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNRDFVTWNAMLCGYA 662
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS-----IKF 96
G EE + LF M V+P+H V +AC+ + G +D M+S +
Sbjct: 663 HHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMGLVDKGLHYFDVMLSEYGLDPQS 722
Query: 97 EGNACVKRPLLDLFIKCGRMEITSGLFEEM 126
E +C ++D+ + GR++ L ++M
Sbjct: 723 EHYSC----MVDILGRSGRIDEALNLVQKM 748
>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
Length = 696
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 150/322 (46%), Gaps = 55/322 (17%)
Query: 56 MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR 115
M ++G+ D F+ + AC++L+ G+ +++++I F
Sbjct: 1 MEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFR------------------ 42
Query: 116 MEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGG 175
D + +L+ YAKC L + F ++ KDL +W+++++ YA G
Sbjct: 43 ------------TDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIISAYARAG 90
Query: 176 FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI------ 229
E L MI ++PN ++ + L CA V G+ G+AIH +L +
Sbjct: 91 RGEMAVVLY--RRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVL 148
Query: 230 -----HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL-RDVIVAN 283
++ C ++ + VF + R+V + ++ISA+V++G+ +AL+L R V
Sbjct: 149 QDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEA 208
Query: 284 VKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSR 332
++PN T ++L A L L +G T V NAL+ MYG+CG+ ++R
Sbjct: 209 IEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEAR 268
Query: 333 KIFVLMPHKNLVSWNVMISVYG 354
K+F M +N++SW MI+ Y
Sbjct: 269 KVFDSMTARNVISWTSMIAAYA 290
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/397 (22%), Positives = 173/397 (43%), Gaps = 80/397 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+E G ++H HLI+ G L + LL+++ W+S++
Sbjct: 26 LEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIISA 85
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPD--HFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
Y G E V L+ MI +GV P+ F C C+ + G+ ++ +++ K
Sbjct: 86 YARAGRGEMAVVLYRRMIAEGVEPNVVTFAC--ALGGCASVAGLADGRAIHQRILASK-- 141
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
+ QD ++ +SL++ Y KC + + F +K
Sbjct: 142 ----------------------------VPQDDVLQDSLLNMYLKCDEMVEARKVFEGMK 173
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+++ S+ AM++ Y G E L M ++ ++PN + + +L A + ++ G
Sbjct: 174 ARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEA-IEPNAYTFATILGAVEGLGNLEKG 232
Query: 218 KAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
+ +H ++ + + CG + + VF+ ++ R+V+ W S+I+A+ +
Sbjct: 233 RKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQH 292
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA--------- 317
G +AL+L + + +V+P+ V+ S L AC L AL +G V A
Sbjct: 293 GNPQEALNLFKRM---DVEPSGVSFSSALNACALLGALDEGREIHHRVVEAHLASPQMET 349
Query: 318 -LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L+ MY RCG++ +R++F M ++ S N MI+ +
Sbjct: 350 SLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAF 386
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 153/344 (44%), Gaps = 59/344 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
++T+M+ Y G + E + LF M + + P+ + + A L + G+ V+ +
Sbjct: 179 SYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRH 238
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ S F D + +V N+L+ Y KC +
Sbjct: 239 LASRGF------------------------------DTNVVVQNALVTMYGKCGSPVEAR 268
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F + ++++SW +M+A YA G +E NL M D++P+ +S S L ACA
Sbjct: 269 KVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRM-----DVEPSGVSFSSALNACAL 323
Query: 211 VKGVKLGKAIHGYVLRHHI---HLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ + G+ IH V+ H+ + T+ CG + + VFN++ TRD N++I
Sbjct: 324 LGALDEGREIHHRVVEAHLASPQMETSLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMI 383
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA----------ALPQGLGT 310
+AF + G+ AL + R + + + +T VSVL AC + +L G
Sbjct: 384 AAFTQHGRKKQALRIYRRMEQEGIPADGITFVSVLVACSHTSLVADCRDFFQSLVMDHGV 443
Query: 311 GSFVWNAL--IDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMIS 351
V + L +D+ GR G + + ++ MP++ + V+W ++S
Sbjct: 444 VPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQTDAVAWMTLLS 487
>gi|147816693|emb|CAN62262.1| hypothetical protein VITISV_013985 [Vitis vinifera]
Length = 531
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 141/316 (44%), Gaps = 26/316 (8%)
Query: 63 PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGL 122
PD++ V K CS LK GK V+ +I + + L+ ++ K + G+
Sbjct: 121 PDNYTYTFVLKVCSHLKAIFEGKQVHCQVIKAGVAPDTHIHTSLIHMYAKSDCLACAEGV 180
Query: 123 FEEMDQD-FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVT 181
E Q+ L NS+I Y +++ + F K+ KD +W+ M+ GY G EE
Sbjct: 181 LAECSQENVLAINSMISGYMSQGHVEKARAMFDKMGAKDAATWSGMITGYTKNGMHEEAL 240
Query: 182 NLLDEMEMI-QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS-------- 232
+ EM M+ + +QPN +L L+A A + + G+ IH Y+ R +S
Sbjct: 241 VMFREMMMVSNSGVQPNESALVSSLSATACLGALDQGRWIHAYIRRIGAKISITLGTGLV 300
Query: 233 ---TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289
CG + CS +F ++ RDVV W ++S F GQ L +++ +PN V
Sbjct: 301 DMYAKCGSIHCSYKLFREMQQRDVVTWGVMMSGFAMHGQARKCFQLFDEMVAGGTRPNEV 360
Query: 290 TIVSVLPACLKLAALPQG----------LGTGSFV--WNALIDMYGRCGAIQKSRKIFVL 337
V++L AC L G G V + ++D+ GR G + ++ ++ +
Sbjct: 361 IFVAILSACSHAGYLELGHHYFNQMVTDFGIRPSVEHYGCMVDLLGRAGQLAEAEELIIS 420
Query: 338 MPHK-NLVSWNVMISV 352
MP + V W ++S
Sbjct: 421 MPEEPTAVIWGALLSA 436
Score = 37.7 bits (86), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 11/121 (9%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
VFN++ + DV +N++I D+L L +++ + P+ T VL C L A
Sbjct: 79 VFNRIPSPDVFAYNAMIRGLTLGNCPYDSLLLYNKLLLGGLTPDNYTYTFVLKVCSHLKA 138
Query: 304 L-----------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
+ G+ + + +LI MY + + + + +N+++ N MIS
Sbjct: 139 IFEGKQVHCQVIKAGVAPDTHIHTSLIHMYAKSDCLACAEGVLAECSQENVLAINSMISG 198
Query: 353 Y 353
Y
Sbjct: 199 Y 199
>gi|302798811|ref|XP_002981165.1| hypothetical protein SELMODRAFT_113923 [Selaginella moellendorffii]
gi|300151219|gb|EFJ17866.1| hypothetical protein SELMODRAFT_113923 [Selaginella moellendorffii]
Length = 378
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/328 (23%), Positives = 157/328 (47%), Gaps = 36/328 (10%)
Query: 56 MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR 115
M GV D + V C+ L D G+ ++ + + + V L++++ KC
Sbjct: 1 MSATGVEIDDVLVATVIGICANLGDLAAGRKIHARVTT----SSVIVHTALINMYGKCKE 56
Query: 116 MEITSGLFEEM-------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAML 168
E +F++M D ++N+L++ YA+C + + F ++++ ++SW+ M+
Sbjct: 57 PEEAREIFDKMPDRDSGFHSDVALDNTLLNMYARCGSIAEARKLFDGMRRRSVISWSTMV 116
Query: 169 AGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH 228
A YA GG + +L ME ++PN I+ + L+ACA + + G+ IH V+
Sbjct: 117 AAYAHGGHHRQALDLYKAMESSSPAVKPNCITHANALSACAALGDLAEGRRIHARVVAEE 176
Query: 229 -----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLR 277
IH+ C + + VF++L RD+V WNS+++A+ + G + A+ + R
Sbjct: 177 WSGAAVVCSALIHMYAKCSCLDDARRVFDELRHRDLVCWNSMVAAYAQFGHLGSAVAVYR 236
Query: 278 DVIVANVKPNTVTIVSVLPACLKLAALPQGLG----------TGSFVWN---ALIDMYGR 324
++++ P+++T++ ++ + G G +W L+D+ GR
Sbjct: 237 EMVLDGTDPSSITLIGLVIGASHAGRVEDGRGYFVEFVDHHREVELLWEHYMCLVDLLGR 296
Query: 325 CGAIQKSRKIFVLMPHKNLVS-WNVMIS 351
CG +Q + ++ MP + V+ W ++S
Sbjct: 297 CGWLQDAEELVETMPFEPCVTGWMTLLS 324
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 70/132 (53%), Gaps = 13/132 (9%)
Query: 235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN--VKPNTVTIV 292
CG + + +F+ + R V+ W+++++A+ G ALDL + + ++ VKPN +T
Sbjct: 91 CGSIAEARKLFDGMRRRSVISWSTMVAAYAHGGHHRQALDLYKAMESSSPAVKPNCITHA 150
Query: 293 SVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK 341
+ L AC L L +G + V +ALI MY +C + +R++F + H+
Sbjct: 151 NALSACAALGDLAEGRRIHARVVAEEWSGAAVVCSALIHMYAKCSCLDDARRVFDELRHR 210
Query: 342 NLVSWNVMISVY 353
+LV WN M++ Y
Sbjct: 211 DLVCWNSMVAAY 222
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 29/38 (76%)
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
N L++MY RCG+I ++RK+F M ++++SW+ M++ Y
Sbjct: 82 NTLLNMYARCGSIAEARKLFDGMRRRSVISWSTMVAAY 119
>gi|297798072|ref|XP_002866920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312756|gb|EFH43179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 559
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 153/344 (44%), Gaps = 62/344 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
++ +++ Y V + ++ + + G PD F P V+KAC + R GK ++ +
Sbjct: 73 SYNTLLSSYAVCDKPRMTIFVYRVFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGTV 132
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F D V NSL+ FY C + +
Sbjct: 133 TKMGFY------------------------------DDIYVQNSLVHFYGVCGESRNACK 162
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +D+VSW ++ G+ G +E + +M D++PN + L + +V
Sbjct: 163 VFDQMPVRDVVSWTGIITGFTRTGLYKEALDTFSKM-----DVEPNLATYVCALVSSGRV 217
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACG------FVIC-----SCSVFNQLSTRDVVVWNSII 260
+ LGK IHG +L+ +S G +V C + +VF +L +D V WNS+I
Sbjct: 218 GCLSLGKGIHGLILKRASLISLETGNALIDMYVKCEQLSDAMTVFGELQKKDKVSWNSMI 277
Query: 261 SAFV---RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQ 306
S V RS + ++ +++ + +KP+ + SVL AC L A L
Sbjct: 278 SGLVHCERSNEAIELFSMMQ--TSSGIKPDGHILTSVLSACASLGAVDYGRWVHEYVLSA 335
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
G+ + + A++DMY +CG I+ + KIF + KN+ +WN ++
Sbjct: 336 GIKWDTHIGTAIVDMYAKCGYIETALKIFNGIRRKNVFTWNALL 379
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 123/278 (44%), Gaps = 34/278 (12%)
Query: 103 KRPLLDLFIKCGRMEI-----TSGLFEEMDQDFLVNNSLIDFYAK-CRYLKVSHCKFSKI 156
K LL+L +C + + T + ++ +D L N ++ F K + S I
Sbjct: 6 KPVLLELISRCSSLRVFKQIQTQLISRDILRDELFINKVVTFLGKSADFATYSSVILHSI 65
Query: 157 KQK-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
+ S+N +L+ YA+ + +T + + + P+ + V AC + G++
Sbjct: 66 RSVLSSFSYNTLLSSYAVCD-KPRMTIFVYRV-FVSNGFSPDMFTFPPVFKACGKFSGIR 123
Query: 216 LGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
GK IHG YV +H CG +C VF+Q+ RDVV W II+ F
Sbjct: 124 EGKQIHGTVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFDQMPVRDVVSWTGIITGFT 183
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW--------- 315
R+G +ALD + +V+PN T V L + ++ L G G +
Sbjct: 184 RTGLYKEALDTFSKM---DVEPNLATYVCALVSSGRVGCLSLGKGIHGLILKRASLISLE 240
Query: 316 --NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
NALIDMY +C + + +F + K+ VSWN MIS
Sbjct: 241 TGNALIDMYVKCEQLSDAMTVFGELQKKDKVSWNSMIS 278
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 118/280 (42%), Gaps = 66/280 (23%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W SM+ E + LF +M G++PD + V AC+ L G+ V++Y
Sbjct: 272 SWNSMISGLVHCERSNEAIELFSMMQTSSGIKPDGHILTSVLSACASLGAVDYGRWVHEY 331
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
++S A +K D + +++D YAKC Y++ +
Sbjct: 332 VLS------AGIK------------------------WDTHIGTAIVDMYAKCGYIETAL 361
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F+ I++K++ +WNA+L G A+ G E + EM++ +PN ++ +L AC
Sbjct: 362 KIFNGIRRKNVFTWNALLGGLAIHGHGHESLRYFE--EMVKLGFKPNLVTFLAILNACCH 419
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVV------WNSIISAFV 264
V G+ F+++ TR+ + + +I F
Sbjct: 420 TGLVDEGR------------------------RYFHKMKTREYNLSPKLEHYGCLIDLFC 455
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL 304
R+G + +AL+L++ + VKP+ +VL AC L
Sbjct: 456 RAGLLDEALELIKAM---PVKPDVRICGAVLSACKSRGTL 492
>gi|297844350|ref|XP_002890056.1| hypothetical protein ARALYDRAFT_888825 [Arabidopsis lyrata subsp.
lyrata]
gi|297335898|gb|EFH66315.1| hypothetical protein ARALYDRAFT_888825 [Arabidopsis lyrata subsp.
lyrata]
Length = 790
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/305 (27%), Positives = 149/305 (48%), Gaps = 14/305 (4%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y+ G+ EE + LF M+ GVRP+ V ACS D + + +
Sbjct: 233 SWNAMLSGYSQNGFTEETLRLFNDMLRLGVRPNETTWVIVISACSFRADPSLAHSLVKLI 292
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM--DQDFLVNNSLIDFYAKCRYLKVS 149
+ N VK LLD+ KC + +F E+ ++ + N++I Y + + +
Sbjct: 293 GEKRIRLNFFVKTALLDMHAKCRDILSARRIFNELGTQKNLVTWNAMISGYTRIGDMSSA 352
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + ++++VSWN+++AGYA G ++M + D +P+ +++ VL+AC
Sbjct: 353 RQLFDTMPKRNVVSWNSVIAGYAHNGQPALAIEFFEDM-IDYGDSKPDEVTMISVLSACG 411
Query: 210 QVKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNS 258
+ ++LG I Y+ + I L+ + CG + + VF+++ RDVV +N+
Sbjct: 412 HMGDLELGDCIVDYIGKKQIKLNDSGYRSLIFMYARCGNLWEAKRVFDEMKERDVVSYNT 471
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNAL 318
+ SAF +G V L+LL + ++P+ VT SVL AC + L +G + N
Sbjct: 472 LFSAFAANGDGVKTLNLLSKMKDEGIEPDRVTYTSVLTACNRAGLLEEGQRIFKSIRNPS 531
Query: 319 IDMYG 323
D Y
Sbjct: 532 ADHYA 536
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 139/303 (45%), Gaps = 60/303 (19%)
Query: 110 FIKCGRMEITSGLFEEMDQ---DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNA 166
+ K G E LF+ M + D + +I +AK + L+ + F + +K +VSWNA
Sbjct: 177 YWKYGNKEEACKLFDMMPEGKIDVVSWTVMITGFAKLKDLENARRCFDCMPEKSVVSWNA 236
Query: 167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR 226
ML+GY+ GF EE L + +M++ ++PN + V++AC+ L ++ +
Sbjct: 237 MLSGYSQNGFTEETLRLFN--DMLRLGVRPNETTWVIVISACSFRADPSLAHSLVKLIGE 294
Query: 227 HHIHLS-----------TACGFVICSCSVFNQLST------------------------- 250
I L+ C ++ + +FN+L T
Sbjct: 295 KRIRLNFFVKTALLDMHAKCRDILSARRIFNELGTQKNLVTWNAMISGYTRIGDMSSARQ 354
Query: 251 -------RDVVVWNSIISAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVLPACLKLA 302
R+VV WNS+I+ + +GQ A++ D+I + KP+ VT++SVL AC +
Sbjct: 355 LFDTMPKRNVVSWNSVIAGYAHNGQPALAIEFFEDMIDYGDSKPDEVTMISVLSACGHMG 414
Query: 303 ALPQG------LGTGSFVWN-----ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
L G +G N +LI MY RCG + +++++F M +++VS+N + S
Sbjct: 415 DLELGDCIVDYIGKKQIKLNDSGYRSLIFMYARCGNLWEAKRVFDEMKERDVVSYNTLFS 474
Query: 352 VYG 354
+
Sbjct: 475 AFA 477
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 94/368 (25%), Positives = 162/368 (44%), Gaps = 68/368 (18%)
Query: 6 QVHAHLIVC-GVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPD 64
Q+HAHLIV + ++ S+L+ S YY +V D P+
Sbjct: 24 QIHAHLIVSNSLHRQSYWASRLI-------SCCTRLRAPPYYARLV------FDSVTFPN 70
Query: 65 HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP---LLDLFIK-CGRMEIT- 119
F+ +++ S++ D+ + + + + + C P + IK G+ +
Sbjct: 71 VFLVNSMFRYFSQM-------DMANDALRLYEQRSRCGIMPDTFFFPVVIKSAGKFGVLF 123
Query: 120 SGLFEEMD--QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFR 177
L E+M +D V N ++D YAK ++ + F +I + WN M++GY G +
Sbjct: 124 QALVEKMGIFKDPYVRNVIMDMYAKHESVESARKVFDQITHRKGSDWNVMISGYWKYGNK 183
Query: 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGF 237
EE L D M + D+ T+ ++G A++K ++ +
Sbjct: 184 EEACKLFDMMPEGKIDVVSWTVMITGF----AKLKDLENAR------------------- 220
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
F+ + + VV WN+++S + ++G + L L D++ V+PN T V V+ A
Sbjct: 221 -----RCFDCMPEKSVVSWNAMLSGYSQNGFTEETLRLFNDMLRLGVRPNETTWVIVISA 275
Query: 298 CLKLA------ALPQGLGTGS-----FVWNALIDMYGRCGAIQKSRKIF-VLMPHKNLVS 345
C A +L + +G FV AL+DM+ +C I +R+IF L KNLV+
Sbjct: 276 CSFRADPSLAHSLVKLIGEKRIRLNFFVKTALLDMHAKCRDILSARRIFNELGTQKNLVT 335
Query: 346 WNVMISVY 353
WN MIS Y
Sbjct: 336 WNAMISGY 343
>gi|449521571|ref|XP_004167803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
chloroplastic-like [Cucumis sativus]
Length = 817
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 128/246 (52%), Gaps = 25/246 (10%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V N+LI Y++C + S F + +KD+VSWN M++ + G +E L EM+ +
Sbjct: 351 VMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMK--K 408
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS----------TACGFVICS 241
D+ ++++++ +L+A + ++ +GK HGY+LR+ I G + +
Sbjct: 409 QDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGMDSYLIDMYAKSGLIEAA 468
Query: 242 CSVFNQLST--RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC- 298
+VF + + RD WNS++S + ++G V A +LR ++ V PN VT+ S+LPAC
Sbjct: 469 QNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACN 528
Query: 299 ----------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
L ++ L FV ALIDMY + G+I + +F K++V+++
Sbjct: 529 PSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYST 588
Query: 349 MISVYG 354
MI YG
Sbjct: 589 MILGYG 594
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/335 (22%), Positives = 155/335 (46%), Gaps = 58/335 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ + G +E + LFY M + + D + A S+L++ +GK + Y+
Sbjct: 382 SWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYL 441
Query: 92 I--SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
+ I+FEG + L+D++ K G +E +FE+ S
Sbjct: 442 LRNGIQFEG---MDSYLIDMYAKSGLIEAAQNVFEK---------------------SFS 477
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
H ++D +WN+M++GY G ++ +L +M+ + PN ++L+ +L AC
Sbjct: 478 H-------ERDQATWNSMMSGYTQNGLVDQAFLIL--RQMLDQKVMPNVVTLASILPACN 528
Query: 210 QVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ GK +HG+ +R+ I + + G + + +VF++ + + +V +++
Sbjct: 529 PSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYST 588
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG---TGSFVW 315
+I + + G AL + + + ++P+ VT+V+VL AC + +GL + V+
Sbjct: 589 MILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFESMRTVY 648
Query: 316 N---------ALIDMYGRCGAIQKSRKIFVLMPHK 341
N + DM GR G + K+ + + + K
Sbjct: 649 NIQPSTEHFCCVADMLGRAGRVDKAYEFVIGLGEK 683
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/318 (24%), Positives = 139/318 (43%), Gaps = 44/318 (13%)
Query: 61 VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITS 120
V+ D + V KAC++ ++ VGK V+ + + + V LL+++ C
Sbjct: 92 VKCDSYTYSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSST---- 147
Query: 121 GLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEV 180
+ ++ Y++C ++ F ++++ +V+WN ++A Y E
Sbjct: 148 ----------TPDGKMVSGYSRCDLVRKV---FDTMRKRTVVAWNTLIAWYVRTERYAEA 194
Query: 181 TNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG-------------YVLRH 227
M ++ ++P+ +S V A + + K +HG YV+
Sbjct: 195 VKQFSMM--MKIGIKPSPVSFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSS 252
Query: 228 HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA-NVKP 286
I + G + + VF+ R+ VWN++ISAFV++ ++ + L + + +
Sbjct: 253 AIFMYAELGCLEFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAI 312
Query: 287 NTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIF 335
+ VT++S + A L +FV NALI MY RC +I S KIF
Sbjct: 313 DEVTLLSAISAASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIF 372
Query: 336 VLMPHKNLVSWNVMISVY 353
MP K++VSWN MIS +
Sbjct: 373 DNMPEKDVVSWNTMISAF 390
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/345 (22%), Positives = 153/345 (44%), Gaps = 54/345 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +++ Y Y E V F +M+ G++P V+ A S L D++
Sbjct: 178 WNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSLGDFK---------- 227
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
NA V +L +K G E D V +S I YA+ L+ +
Sbjct: 228 ------NANVVHGML---VKLG---------SEYVNDLYVVSSAIFMYAELGCLEFAKKV 269
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQT-DMQPNTISLSGVLAACAQV 211
F +++ WN M++ + F E L + +++ D + ++L ++A + +
Sbjct: 270 FDNCLERNTEVWNTMISAFVQNNFSLEGIQLF--FQAVESEDAAIDEVTLLSAISAASHL 327
Query: 212 KGVKLGKAIHGYVLRH-----------HIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ +L + +H +V+++ I + + C + S +F+ + +DVV WN++I
Sbjct: 328 QKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMI 387
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW----- 315
SAFV++G +AL L ++ ++ ++VT+ ++L A L G T ++
Sbjct: 388 SAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQ 447
Query: 316 -----NALIDMYGRCGAIQKSRKIF--VLMPHKNLVSWNVMISVY 353
+ LIDMY + G I+ ++ +F ++ +WN M+S Y
Sbjct: 448 FEGMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGY 492
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 105/238 (44%), Gaps = 37/238 (15%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F + + V WN ++ G F +E M+ ++ ++ + S VL ACA +
Sbjct: 51 FDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSVLKACADTR 110
Query: 213 GVKLGKAIHGYVLR------HHIHLSTACGFVICSCS------------------VFNQL 248
+ +GKA+H + LR ++ S + +CS + VF+ +
Sbjct: 111 NLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRKVFDTM 170
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG- 307
R VV WN++I+ +VR+ + +A+ ++ +KP+ V+ V+V PA L
Sbjct: 171 RKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSLGDFKNAN 230
Query: 308 ------LGTGS------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ GS +V ++ I MY G ++ ++K+F +N WN MIS +
Sbjct: 231 VVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMISAF 288
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 91/232 (39%), Gaps = 58/232 (25%)
Query: 2 ELGIQVHAHLIVCGVELCA--------FLGSQLLEVFCN--------------WTSMMGM 39
++G Q H +L+ G++ + S L+E N W SMM
Sbjct: 432 DIGKQTHGYLLRNGIQFEGMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSG 491
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G ++ + M+D+ V P+ + AC+ GK ++ + I + N
Sbjct: 492 YTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLDQN 551
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK--FSKIK 157
V L+D++ K G ++H + FSK
Sbjct: 552 VFVATALIDMYSKSG--------------------------------SIAHAENVFSKAN 579
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
+K +V+++ M+ GY G E + M+ ++ +QP+ ++L VL+AC+
Sbjct: 580 EKSIVTYSTMILGYGQHGMGESALFMFHRMQ--KSGIQPDAVTLVAVLSACS 629
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 26/136 (19%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN--VKPNTVTIVSVLPACLKL 301
+F+ L V+WN+II V + +AL ++ ++ VK ++ T SVL AC
Sbjct: 50 LFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSVLKACADT 109
Query: 302 AALPQG-----------LGTGSFVWNALIDMYGRCGAIQKS-------------RKIFVL 337
L G + V+N+L++MY C + RK+F
Sbjct: 110 RNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRKVFDT 169
Query: 338 MPHKNLVSWNVMISVY 353
M + +V+WN +I+ Y
Sbjct: 170 MRKRTVVAWNTLIAWY 185
>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
[Vitis vinifera]
Length = 807
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 102/395 (25%), Positives = 169/395 (42%), Gaps = 80/395 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN--------------------------WTSMM 37
G ++H ++ G+++ +L S L+E++ W M+
Sbjct: 230 GREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWNVMI 289
Query: 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
Y G + + + LF M+ G++PD+ ++ CSE D GK ++ + +
Sbjct: 290 SGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSESLDIAFGKQIHGLIFKFGLK 349
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
N V+ LLD+++KCG M LK+ F + +
Sbjct: 350 NNIRVETALLDMYLKCGDMGTG--------------------------LKI----FRRSQ 379
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+L+ W+A+++ A G + L E +M D ++ L VL AC+ + G
Sbjct: 380 NHNLIMWSAVISNCAQSGCPTKALELFYEFKM--EDGLADSGILVAVLRACSSLTLKPEG 437
Query: 218 KAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
IHG +V + L C + S VF +LS +D+V WN++IS + +
Sbjct: 438 MQIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNALISGYAQD 497
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVW 315
+AL RD+ + ++PNTVTI +L C L+ + QGLG+ V
Sbjct: 498 ECADEALKAFRDMQLEEIRPNTVTIACILSVCAHLSVMTLCKEVHGYLIRQGLGSTVLVS 557
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
N+LI Y +CG I S F MP +N VSWN +I
Sbjct: 558 NSLIATYAKCGDINSSLYTFEKMPERNDVSWNSII 592
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/367 (22%), Positives = 175/367 (47%), Gaps = 54/367 (14%)
Query: 14 CGV-ELCAFLGSQLLEV-FCNWTSMM-GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPK 70
CGV E + ++ EV +W +M+ G + Y ++ ++ + G+ P+ C
Sbjct: 157 CGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSLMFFRSMVWEFGIYPNRVACVS 216
Query: 71 VYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEE-MDQD 129
+CS L+ G++++ ++ + + L+++++KCG ++ +F +D+D
Sbjct: 217 SILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSILDKD 276
Query: 130 FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
+ N++I WN M++GY G + LL ++M
Sbjct: 277 SVRRNAVI--------------------------WNVMISGYVSNGCFSQA--LLLFIKM 308
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA-------CGFV 238
+ ++P+ ++ + + C++ + GK IHG + L+++I + TA CG +
Sbjct: 309 MVWGIKPDYSTMVSLFSLCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDM 368
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+F + ++++W+++IS +SG AL+L + + + ++ +V+VL AC
Sbjct: 369 GTGLKIFRRSQNHNLIMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLRAC 428
Query: 299 LKLAALPQGLG-----------TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
L P+G+ + FV +AL+D+Y +C + S+K+F+ + K+LVSWN
Sbjct: 429 SSLTLKPEGMQIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWN 488
Query: 348 VMISVYG 354
+IS Y
Sbjct: 489 ALISGYA 495
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 129/263 (49%), Gaps = 28/263 (10%)
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMD--QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
V R L +K M+I GL +M D V ++L+D YAKCR + S F ++ QK
Sbjct: 424 VLRACSSLTLKPEGMQI-HGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQK 482
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
DLVSWNA+++GYA +E +M++ +++PNT++++ +L+ CA + + L K
Sbjct: 483 DLVSWNALISGYAQDECADEALKAFRDMQL--EEIRPNTVTIACILSVCAHLSVMTLCKE 540
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+HGY++R I CG + S F ++ R+ V WNSII +
Sbjct: 541 VHGYLIRQGLGSTVLVSNSLIATYAKCGDINSSLYTFEKMPERNDVSWNSIILGMGMHSR 600
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWN 316
+ + L ++ + +KP+ VT ++L AC + +G L +
Sbjct: 601 TDEMIVLFDKMVASGIKPDHVTFTAILSACSHAGRVDEGCKYFKSMVEDFNLKPQLEQYT 660
Query: 317 ALIDMYGRCGAIQKSRKIFVLMP 339
++D+ GR G + ++ + + MP
Sbjct: 661 CMVDLLGRAGHLNQAYDLIMAMP 683
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/341 (24%), Positives = 155/341 (45%), Gaps = 61/341 (17%)
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHF-VCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
Y G++++ + ++ M+D GV+ + F P + KA L D G+ ++ +++ +
Sbjct: 83 YTEDGFFDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKGRQIHGHVLKLGVLD 142
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
+ V LL ++ KCG +E +FE+M +
Sbjct: 143 DVSVVNSLLTMYWKCGVVEDAVQMFEKM------------------------------PE 172
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMI-QTDMQPNTISLSGVLAACAQVKGVKLG 217
DLVSWN M++G+ + +L+ M+ + + PN ++ + +C+ ++ + G
Sbjct: 173 VDLVSWNTMISGFQKS--MDYTRSLMFFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHG 230
Query: 218 KAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRD-----VVVWNSIIS 261
+ IHG Y++ I + CG + + ++FN + +D V+WN +IS
Sbjct: 231 REIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWNVMIS 290
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC---LKLAALPQ--------GLGT 310
+V +G AL L ++V +KP+ T+VS+ C L +A Q GL
Sbjct: 291 GYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSESLDIAFGKQIHGLIFKFGLKN 350
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
V AL+DMY +CG + KIF + NL+ W+ +IS
Sbjct: 351 NIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIMWSAVIS 391
>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
Length = 652
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/359 (26%), Positives = 164/359 (45%), Gaps = 57/359 (15%)
Query: 18 LCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSE 77
L F G Q VF +WT M+ + ++ F M+ +G+ P AC++
Sbjct: 30 LAVFHGIQSKNVF-SWTMMLAAFAENRDFDRCWLFFRGMLLQGINPGEVGISIFLSACTD 88
Query: 78 LKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLI 137
++ +G+ + ++ E + V+ L+ L+ K G + +F
Sbjct: 89 AREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDAASVF-------------- 134
Query: 138 DFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN 197
L++SH +D+V+W+AM+A YA G E L +M++ + PN
Sbjct: 135 --------LRMSH--------RDVVAWSAMVAAYARNGHPREALGLFRQMDL--DGVAPN 176
Query: 198 TISLSGVLAACAQVKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFN 246
++L L ACA + ++ G +H V I +L CG + + F
Sbjct: 177 KVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFG 236
Query: 247 QLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ 306
Q+ ++VV W++I +A+ R+ + DA+ +L + + + PN+ T VSVL AC +AAL Q
Sbjct: 237 QIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQ 296
Query: 307 G---------LGTG----SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
G LG G +V AL++MY +CG + + +F + H +LV WN +I+
Sbjct: 297 GRRIHERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIAT 355
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 155/340 (45%), Gaps = 58/340 (17%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W++M+ Y G+ E + LF M GV P+ AC+ L D R G ++
Sbjct: 145 WSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQ--- 201
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
++ +G I SG+ +V +L++ Y KC ++ +
Sbjct: 202 RVEAQG-------------------IQSGV--------VVGTALVNLYGKCGRIEAAAEA 234
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F +I +K++V+W+A+ A YA + +L M++ + PN+ + VL ACA +
Sbjct: 235 FGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDL--EGLAPNSTTFVSVLDACAAIA 292
Query: 213 GVKLGKAIHG-------------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+K G+ IH YVL +++ + CG + + ++F++++ D+V+WNS+
Sbjct: 293 ALKQGRRIHERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSL 352
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGS 312
I+ + GQ AL+L + + ++P +T SVL AC L QG +G
Sbjct: 353 IATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHG 412
Query: 313 FVWNA-----LIDMYGRCGAIQKSRKIFVLMP-HKNLVSW 346
A ++D+ GR G I S + + MP + V+W
Sbjct: 413 IFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAW 452
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 121/243 (49%), Gaps = 24/243 (9%)
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
N LID Y KC + F I+ K++ SW MLA +A R+ L M+
Sbjct: 14 NLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAEN--RDFDRCWLFFRGMLLQG 71
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSC 242
+ P + +S L+AC + + +G++I +L I L G +
Sbjct: 72 INPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDAA 131
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
SVF ++S RDVV W+++++A+ R+G +AL L R + + V PN VT+VS L AC L
Sbjct: 132 SVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLG 191
Query: 303 AL-----------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
L QG+ +G V AL+++YG+CG I+ + + F + KN+V+W+ + +
Sbjct: 192 DLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISA 251
Query: 352 VYG 354
Y
Sbjct: 252 AYA 254
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/287 (21%), Positives = 117/287 (40%), Gaps = 54/287 (18%)
Query: 14 CG-VELCAFLGSQLLEV-FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKV 71
CG +E A Q++E W+++ Y + + + + M +G+ P+ V
Sbjct: 225 CGRIEAAAEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSV 284
Query: 72 YKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFL 131
AC+ + + G+ +++ R+ + G E D
Sbjct: 285 LDACAAIAALKQGRRIHE-------------------------RIHVLGGGLE---SDVY 316
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V +L++ Y+KC L ++ F KI DLV WN+++A A G E+ L + M +
Sbjct: 317 VLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRL-- 374
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTR 251
+QP I+ + VL AC+ + G+ +H + I +F +
Sbjct: 375 EGLQPTIITFTSVLFACSHAGMLDQGR-------KHFVSF-------IGDHGIFPEAEH- 419
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ ++ R+G +VD+ DLL + +P+ V ++ L AC
Sbjct: 420 ----FGCMVDLLGRAGWIVDSEDLL---LHMPFEPHPVAWMAFLGAC 459
>gi|222619002|gb|EEE55134.1| hypothetical protein OsJ_02921 [Oryza sativa Japonica Group]
Length = 493
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 140/289 (48%), Gaps = 34/289 (11%)
Query: 86 DVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRY 145
D Y I+I +A + P LD+ G L + D V N+LI+ Y+ C Y
Sbjct: 4 DNYSLNIAI----SAAARVPSLDV----GSQFHALSLKLSLASDSFVLNALINMYSSCNY 55
Query: 146 LKVSHCKFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSG 203
+ + D+VSWN ++AGY GG + +M Q + + ++L
Sbjct: 56 PASARLVLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRL--DEVTLLN 113
Query: 204 VLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRD 252
VL ACA+ +K+G H Y+ + + CG V + VFN++ R+
Sbjct: 114 VLVACARTGAMKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERN 173
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP------- 305
VV W S+I+ +SG+ +A+DL RD+ +A VK + TI +V+ +C ++ AL
Sbjct: 174 VVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHA 233
Query: 306 ----QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
GLG V N+LIDMY +CG + K+ +IF + +++ +W VMI
Sbjct: 234 YCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMI 282
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 147/344 (42%), Gaps = 57/344 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ Y G + + F+ M + VR D V AC+ +VG + +
Sbjct: 75 SWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALV 134
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ FE I C + +SL+ YAKC ++ +
Sbjct: 135 VLNGFE-------------INC-----------------YIGSSLVSMYAKCGMVEEARR 164
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+++ ++++V W +M+AG G +E +L +M++ TI+ V+++C Q+
Sbjct: 165 VFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIAT--VVSSCGQM 222
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ LG+ +H Y H I + + CG V + +F+ L+ RDV W +I
Sbjct: 223 GALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMI 282
Query: 261 SAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPACLKLAALPQG---LGTGSFVWN 316
F +G V+ALDL + + V PN V + VL AC + QG S V+N
Sbjct: 283 MGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYN 342
Query: 317 ---------ALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
++D+ GR + ++ + MP ++V W ++
Sbjct: 343 LVPRIEHYGCMVDLLGRAKLLAEAEQFIKDMPVAPDVVVWRSLL 386
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 89/182 (48%), Gaps = 24/182 (13%)
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSC 242
M + SL+ ++A A+V + +G H +VL I++ ++C + +
Sbjct: 1 MTLDNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASAR 60
Query: 243 SVFNQLS--TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
V + DVV WN+II+ ++R G AL + V+ + VT+++VL AC +
Sbjct: 61 LVLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACAR 120
Query: 301 LAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
A+ G ++ ++L+ MY +CG ++++R++F MP +N+V W M
Sbjct: 121 TGAMKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSM 180
Query: 350 IS 351
I+
Sbjct: 181 IA 182
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 136/319 (42%), Gaps = 74/319 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
M++G HA +++ G E+ ++GS L+ ++ WTSM+
Sbjct: 124 MKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAG 183
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
G ++E V+LF M GV+ D V +C ++ +G+ ++ Y +G+
Sbjct: 184 CTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYC-----DGH 238
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
GL +E+ V NSLID Y+KC + ++ F + ++
Sbjct: 239 ---------------------GLGKELS----VKNSLIDMYSKCGDVNKAYQIFHGLTKR 273
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+ +W M+ G+A+ G E +L +ME + + PN + GVL AC+ G
Sbjct: 274 DVFTWTVMIMGFAMNGLCVEALDLFAQMEG-EDKVMPNEVIFLGVLTACSHG-----GLV 327
Query: 220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
GY HH H + V+N + + + ++ R+ + +A ++D+
Sbjct: 328 EQGY---HHFHRMS---------KVYNLVPR--IEHYGCMVDLLGRAKLLAEAEQFIKDM 373
Query: 280 IVANVKPNTVTIVSVLPAC 298
VA P+ V S+L AC
Sbjct: 374 PVA---PDVVVWRSLLFAC 389
>gi|125555946|gb|EAZ01552.1| hypothetical protein OsI_23585 [Oryza sativa Indica Group]
Length = 530
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/381 (25%), Positives = 166/381 (43%), Gaps = 48/381 (12%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G + HA I G A+ GS L+E++ W M+ Y
Sbjct: 68 GRKAHAAAIKTGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIR 127
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G Y V L M GV PD ACS +D +G+ ++ YM ++ F N V
Sbjct: 128 CGRYSAAVALSEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNV-FGFNLPV 186
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNS-LIDFYAKCRYLKVSHCKFSKIKQKDL 161
LLD++ K +E LFE+M +++ + L+ Y L + F++ K+KDL
Sbjct: 187 ANALLDMYTKNDCLEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDL 246
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
+ W AM+ G EE L +M+M + ++P+ ++ +L CA + + G+ IH
Sbjct: 247 ILWTAMINACVQHGCFEEALTLFRDMQMQR--VEPDRFTVVTLLTCCANLGALDQGEWIH 304
Query: 222 GYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y + I + + CG + S VF ++ RD W +II +GQ
Sbjct: 305 QYAEQRKMKIDAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAG 364
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNAL 318
AL+L +D+ + VKP+ VT + VL AC + +G + ++ L
Sbjct: 365 RALELFQDMQRSKVKPDGVTFIGVLSACCHGGLVDEGRKQFHAMREVYQIEPRVEHYSCL 424
Query: 319 IDMYGRCGAIQKSRKIFVLMP 339
+++ GR G + ++ ++ +P
Sbjct: 425 VNLLGRAGLLDEAERLIGDVP 445
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/359 (23%), Positives = 153/359 (42%), Gaps = 84/359 (23%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G + ++ ++Y + +G+ D F P V +A LK G+ + I F +A
Sbjct: 28 GSFARVMAVYYDLRARGLVADSFTYPFVLRAVGVLKLSVEGRKAHAAAIKTGFRWDAYTG 87
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
L++++ GR++I +F+EM + LV
Sbjct: 88 SSLMEMYTMLGRVDIARKVFDEM------------------------------PSRALVL 117
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
WN M+ Y G L ++ME ++ + P+ ++L + AC++ + + LG+ IH Y
Sbjct: 118 WNMMVRCYIRCGRYSAAVALSEQME--RSGVTPDRVTLVTAVTACSRARDLSLGRRIHVY 175
Query: 224 ---VLRHHIHLSTA--------------------------------------CGFVICSC 242
V ++ ++ A G + +
Sbjct: 176 MDNVFGFNLPVANALLDMYTKNDCLEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKAR 235
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
+FNQ +D+++W ++I+A V+ G +AL L RD+ + V+P+ T+V++L C L
Sbjct: 236 VLFNQCKEKDLILWTAMINACVQHGCFEEALTLFRDMQMQRVEPDRFTVVTLLTCCANLG 295
Query: 303 ALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
AL QG + + + ALIDMY +CG I+KS ++F M ++ +W +I
Sbjct: 296 ALDQGEWIHQYAEQRKMKIDAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAII 354
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 80/156 (51%), Gaps = 10/156 (6%)
Query: 209 AQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
A +K G Y + + T G V + VF+++ +R +V+WN ++ ++R G+
Sbjct: 71 AHAAAIKTGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGR 130
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------LGTGSFVWNAL 318
A+ L + + V P+ VT+V+ + AC + L G G V NAL
Sbjct: 131 YSAAVALSEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNVFGFNLPVANAL 190
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+DMY + ++++ K+F MP +N++SW +++S YG
Sbjct: 191 LDMYTKNDCLEEAVKLFEQMPARNIISWTILVSGYG 226
>gi|297830924|ref|XP_002883344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329184|gb|EFH59603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 824
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 130/244 (53%), Gaps = 25/244 (10%)
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
NSL+ Y++C +++ S F ++++D+VSWN M++ + G +E L+ EM+ +
Sbjct: 361 NSLMVMYSRCGFVQKSFGVFHSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQ--KQG 418
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS----------TACGFVICSCS 243
+ + I+++ +L+A + ++ ++GK HG+++R I G + S
Sbjct: 419 FKIDYITVTALLSAASNLRNKEIGKQTHGFLIRQGIQFEGMNSYLIDMYAKSGLIRISQK 478
Query: 244 VF--NQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
+F + + RD WNS+IS + ++G + + R ++ N++PN VT+ S+LPAC ++
Sbjct: 479 LFEGSGYAERDQATWNSMISGYTQNGHTEETFLVFRKMLEQNIRPNAVTVASILPACSQV 538
Query: 302 AALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
++ G L FV +AL+DMY + GAI+ + +F +N V++ MI
Sbjct: 539 GSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAENMFSQTKERNSVTYTTMI 598
Query: 351 SVYG 354
YG
Sbjct: 599 LGYG 602
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 149/327 (45%), Gaps = 62/327 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ + G +E + L Y M +G + D+ + A S L++ +GK + ++
Sbjct: 390 SWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHGFL 449
Query: 92 I--SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
I I+FEG +N+ LID YAK +++S
Sbjct: 450 IRQGIQFEG---------------------------------MNSYLIDMYAKSGLIRIS 476
Query: 150 HCKF--SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207
F S ++D +WN+M++GY G EE L +M++ +++PN ++++ +L A
Sbjct: 477 QKLFEGSGYAERDQATWNSMISGYTQNGHTEET--FLVFRKMLEQNIRPNAVTVASILPA 534
Query: 208 CAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVW 256
C+QV V LGK +HG+ +R + + + + G + + ++F+Q R+ V +
Sbjct: 535 CSQVGSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAENMFSQTKERNSVTY 594
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG------- 309
++I + + G A+ L + +KP+ + V+VL AC + +GL
Sbjct: 595 TTMILGYGQHGMGERAISLFLSMQELGIKPDAIAFVAVLSACSYSGLVDEGLKIFEDMRE 654
Query: 310 -----TGSFVWNALIDMYGRCGAIQKS 331
S + + DM GR G + ++
Sbjct: 655 VYNIQPSSEHYCCITDMLGRVGRVNEA 681
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 98/408 (24%), Positives = 164/408 (40%), Gaps = 85/408 (20%)
Query: 1 MELGIQVHAHLIVC-----------------------GVELCAFLGSQLLEVFCN----- 32
++ G VH HLI C G EL F + +VF N
Sbjct: 123 LKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPGSELDCFEYDVVRKVFDNMRRKN 182
Query: 33 ---WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
W +++ Y G E F +M+ ++P V+ A + + + Y
Sbjct: 183 VVAWNTLISWYVKTGRNAEACRQFAIMMRMEIKPSPVSFVNVFPAVATSRSIKKANVFYG 242
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
M+ L D ++K D V +S I YA+ L+ S
Sbjct: 243 LMLK------------LGDEYVK----------------DLFVVSSAISMYAELGDLESS 274
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQT-DMQPNTISLSGVLAAC 208
F ++++ WN M+ Y E L +E I + ++ + ++ +A
Sbjct: 275 RRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELF--LEAIGSKEIVSDEVTFLLAASAV 332
Query: 209 AQVKGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWN 257
+ ++ V+LG+ HG+V ++ L + CGFV S VF+ + RDVV WN
Sbjct: 333 SGLQQVELGRQFHGFVSKNFRELPIVIINSLMVMYSRCGFVQKSFGVFHSMRERDVVSWN 392
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA 317
++ISAFV++G + L L+ ++ K + +T+ ++L A L G T F+
Sbjct: 393 TMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHGFLIRQ 452
Query: 318 ----------LIDMYGRCGAIQKSRKIF--VLMPHKNLVSWNVMISVY 353
LIDMY + G I+ S+K+F ++ +WN MIS Y
Sbjct: 453 GIQFEGMNSYLIDMYAKSGLIRISQKLFEGSGYAERDQATWNSMISGY 500
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 105/235 (44%), Gaps = 34/235 (14%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I + V WN ++ G+ E M+ + + + S L ACA+ K
Sbjct: 62 FDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTKCDAYTYSSTLKACAETK 121
Query: 213 GVKLGKAIHGYVLR------HHIHLSTACGFVIC--------SC-------SVFNQLSTR 251
+K GKA+H +++R +H S +V C C VF+ + +
Sbjct: 122 NLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPGSELDCFEYDVVRKVFDNMRRK 181
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---- 307
+VV WN++IS +V++G+ +A ++ +KP+ V+ V+V PA ++ +
Sbjct: 182 NVVAWNTLISWYVKTGRNAEACRQFAIMMRMEIKPSPVSFVNVFPAVATSRSIKKANVFY 241
Query: 308 ---LGTGS------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L G FV ++ I MY G ++ SR++F +N+ WN MI VY
Sbjct: 242 GLMLKLGDEYVKDLFVVSSAISMYAELGDLESSRRVFDSCVERNIEVWNTMIGVY 296
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 95/231 (41%), Gaps = 56/231 (24%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC-----------------------NWTSMMG 38
E+G Q H LI G++ + S L++++ W SM+
Sbjct: 440 EIGKQTHGFLIRQGIQFEG-MNSYLIDMYAKSGLIRISQKLFEGSGYAERDQATWNSMIS 498
Query: 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
Y G+ EE +F M+++ +RP+ + ACS++ +GK ++ + I +
Sbjct: 499 GYTQNGHTEETFLVFRKMLEQNIRPNAVTVASILPACSQVGSVDLGKQLHGFSIRQYLDQ 558
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
N V L+D++ K G +K + FS+ K+
Sbjct: 559 NVFVASALVDMYSKAGA------------------------------IKYAENMFSQTKE 588
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
++ V++ M+ GY G E +L + M + ++P+ I+ VL+AC+
Sbjct: 589 RNSVTYTTMILGYGQHGMGERAISLF--LSMQELGIKPDAIAFVAVLSACS 637
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 23/133 (17%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV--IVANVKPNTVTIVSVLPACLKL 301
+F+ + V+WN+II F+ + +AL + K + T S L AC +
Sbjct: 61 LFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTKCDAYTYSSTLKACAET 120
Query: 302 AALPQGLG-----------TGSFVWNALIDMYGRCGAIQKS----------RKIFVLMPH 340
L G + V N+L++MY C S RK+F M
Sbjct: 121 KNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPGSELDCFEYDVVRKVFDNMRR 180
Query: 341 KNLVSWNVMISVY 353
KN+V+WN +IS Y
Sbjct: 181 KNVVAWNTLISWY 193
>gi|125562361|gb|EAZ07809.1| hypothetical protein OsI_30067 [Oryza sativa Indica Group]
Length = 642
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 140/289 (48%), Gaps = 34/289 (11%)
Query: 86 DVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRY 145
D Y I+I +A + P LD+ G L + D V N+LI+ Y+ C Y
Sbjct: 4 DNYSLNIAI----SAAARVPSLDV----GSQFHALSLKLSLASDSFVLNALINMYSSCNY 55
Query: 146 LKVSHCKFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSG 203
+ + D+VSWN ++AGY GG + +M Q + + ++L
Sbjct: 56 PASARLVLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRL--DEVTLLN 113
Query: 204 VLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRD 252
VL ACA+ +K+G H Y+ + + CG V + VFN++ R+
Sbjct: 114 VLVACARTGAMKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERN 173
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP------- 305
VV W S+I+ +SG+ +A+DL RD+ +A VK + TI +V+ +C ++ AL
Sbjct: 174 VVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHA 233
Query: 306 ----QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
GLG V N+LIDMY +CG + K+ +IF + +++ +W VMI
Sbjct: 234 YCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFRGLTKRDVFTWTVMI 282
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 79/344 (22%), Positives = 149/344 (43%), Gaps = 57/344 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ Y G + + F+ M + VR D V AC+ +VG + +
Sbjct: 75 SWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALV 134
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ FE I C + +SL+ YAKC ++ +
Sbjct: 135 VLNGFE-------------INC-----------------YIGSSLVSMYAKCGMVEEARR 164
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+++ ++++V W +M+AG G +E +L +M++ ++ + +++ V+++C Q+
Sbjct: 165 VFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQI--AGVKADDATIATVVSSCGQM 222
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ LG+ +H Y H I + + CG V + +F L+ RDV W +I
Sbjct: 223 GALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFRGLTKRDVFTWTVMI 282
Query: 261 SAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPACLKLAALPQG---LGTGSFVWN 316
F +G V+ALDL + + V PN V + VL AC + QG S V+N
Sbjct: 283 MGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYN 342
Query: 317 ---------ALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
++D+ GR + ++ + MP ++V W ++
Sbjct: 343 LVPRIEHYGCMVDLLGRAKLLAEAEQFIKDMPVAPDVVVWRSLL 386
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 89/182 (48%), Gaps = 24/182 (13%)
Query: 194 MQPNTISLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSC 242
M + SL+ ++A A+V + +G H +VL I++ ++C + +
Sbjct: 1 MTLDNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASAR 60
Query: 243 SVFNQLS--TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
V + DVV WN+II+ ++R G AL + V+ + VT+++VL AC +
Sbjct: 61 LVLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACAR 120
Query: 301 LAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
A+ G ++ ++L+ MY +CG ++++R++F MP +N+V W M
Sbjct: 121 TGAMKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSM 180
Query: 350 IS 351
I+
Sbjct: 181 IA 182
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 125/311 (40%), Gaps = 81/311 (26%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
M++G HA +++ G E+ ++GS L+ ++ WTSM+
Sbjct: 124 MKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAG 183
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
G ++E V+LF M GV+ D V +C ++ +G+ ++ Y +G+
Sbjct: 184 CTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYC-----DGH 238
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
GL +E+ V NSLID Y+KC + ++ F + ++
Sbjct: 239 ---------------------GLGKELS----VKNSLIDMYSKCGDVNKAYQIFRGLTKR 273
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+ +W M+ G+A+ G E +L +ME + + PN + GVL AC+ G
Sbjct: 274 DVFTWTVMIMGFAMNGLCVEALDLFAQMEG-EDKVMPNEVIFLGVLTACSHG-----GLV 327
Query: 220 IHGYVLRHHIH---------------------LSTACGFVICSCSVFNQLSTRDVVVWNS 258
GY HH H L A + + DVVVW S
Sbjct: 328 EQGY---HHFHRMSKVYNLVPRIEHYGCMVDLLGRAKLLAEAEQFIKDMPVAPDVVVWRS 384
Query: 259 IISAFVRSGQV 269
++ A SGQV
Sbjct: 385 LLFACRASGQV 395
>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
Length = 795
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 124/249 (49%), Gaps = 31/249 (12%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
+ + N ++ Y KC + + F I +K+ SW +ML YA G +L M
Sbjct: 57 NVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM- 115
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV-----LRHHIHLSTA-------CG 236
D+QPN + + VL ACA +K ++ GKAIH + L+ + L + CG
Sbjct: 116 ----DLQPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCG 171
Query: 237 FVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296
+ + +F ++S R V WN++I+A+ +SG +A+ L D+ +V+P+ T SVL
Sbjct: 172 SLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLS 228
Query: 297 ACLKLAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
AC L L QG + + NAL+ MY RC + + KIF +P +++VS
Sbjct: 229 ACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVS 288
Query: 346 WNVMISVYG 354
W+ MI+ +
Sbjct: 289 WSAMIAAFA 297
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 91/344 (26%), Positives = 157/344 (45%), Gaps = 59/344 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y G+Y ++L+ M ++P+ V V AC+ +K GK ++
Sbjct: 91 SWGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIKALEEGKAIH--- 144
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
R+ T GL D ++ NSL+ YAKC L+ +
Sbjct: 145 ----------------------SRISGTKGL----KLDVILENSLLTMYAKCGSLEDAKR 178
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ + + SWNAM+A YA G EE L ++M D++P+ + + VL+AC+ +
Sbjct: 179 LFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM-----DVEPSVRTFTSVLSACSNL 233
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACG------FVICSC-----SVFNQLSTRDVVVWNSII 260
+ G+ IH + L + + C C +F +L RDVV W+++I
Sbjct: 234 GLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMI 293
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGSF 313
+AF + +A++ + + V+PN T SVL AC + L G LG G
Sbjct: 294 AAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYK 353
Query: 314 VW----NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ AL+D+Y G++ ++R +F + +++ W V+I Y
Sbjct: 354 ITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGY 397
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 87/396 (21%), Positives = 169/396 (42%), Gaps = 78/396 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++ G ++HA + G EL L + LL ++ +W++M+
Sbjct: 236 LDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAA 295
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ ++E + + M +GVRP+++ V AC+ + D R G+ V+D ++ GN
Sbjct: 296 FAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQIL-----GN 350
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKIKQ 158
+IT LVN +L+D Y L + F +I+
Sbjct: 351 G---------------YKIT-----------LVNGTALVDLYTSYGSLDEARSLFDQIEN 384
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+D W ++ GY+ G R V L EM+ T + I S V++ACA + +
Sbjct: 385 RDEGLWTVLIGGYSKQGHRTGVLELYREMKNT-TKVPATKIIYSCVISACASLGAFADAR 443
Query: 219 AIHG----------YVLRHH-IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
H +VL +++ + G + + VF+++S+RD + W ++I+ + + G
Sbjct: 444 QAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHG 503
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVW 315
+ AL L +++ + +P+ +T + VL AC QG + +
Sbjct: 504 EHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHY 563
Query: 316 NALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ +ID+ R G + + ++ MP N V+W+ ++
Sbjct: 564 SCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLL 599
>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
Length = 695
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/361 (24%), Positives = 168/361 (46%), Gaps = 62/361 (17%)
Query: 52 LFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111
+F M +G++P + V AC++L D R GK ++ +I GN V L DL+
Sbjct: 142 VFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYA 201
Query: 112 KCGRMEITSGLFEEM------------------------------------DQDFLVNNS 135
+CG ++ LF+ M D + +S
Sbjct: 202 RCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASS 261
Query: 136 LIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ 195
++ Y + Y+ + F +I++KD V W M+ G A G E+ LL EM+ + +
Sbjct: 262 VLGAYIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDA--LLLFSEMLLENAR 319
Query: 196 PNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTACGFVICSC-------SV 244
P+ ++S V+++CA++ + G+ +HG + + +S+A + C C ++
Sbjct: 320 PDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTI 379
Query: 245 FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL 304
F+ + TR+VV WNS+I + +GQ ++AL L +++ N+KP++VT V VL AC+ +
Sbjct: 380 FSTMQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLV 439
Query: 305 PQ------------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMIS 351
+ GL + +++++GR G + K+ + M + N + W ++S
Sbjct: 440 EEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLS 499
Query: 352 V 352
V
Sbjct: 500 V 500
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 118/265 (44%), Gaps = 68/265 (25%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCK--FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
D ++N L++ YAK ++SH + F ++ Q+D SWNAML+ YA G E++ + D
Sbjct: 56 NDTFIHNRLLNLYAKSG--EISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFD 113
Query: 186 EM-----------------------------EMIQTDMQPNTISLSGVLAACAQVKGVKL 216
M M + ++P + VL AC Q+ ++
Sbjct: 114 NMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRR 173
Query: 217 GKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVR 265
GK IHG +V L CG + + +F+++ R+VV WN +IS +++
Sbjct: 174 GKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLK 233
Query: 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRC 325
+ Q +DL ++ V+N+KP+ VT SVL A Y +
Sbjct: 234 NRQPEKCIDLFHEMQVSNLKPDQVTASSVLGA------------------------YIQA 269
Query: 326 GAIQKSRKIFVLMPHKNLVSWNVMI 350
G I ++RK+F + K+ V W +MI
Sbjct: 270 GYIDEARKVFGEIREKDEVCWTIMI 294
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 95/216 (43%), Gaps = 41/216 (18%)
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
SH K D N +L YA G L DEM Q + S + +L+
Sbjct: 46 SHMHLHLFKPNDTFIHNRLLNLYAKSGEISHARKLFDEM------TQRDNFSWNAMLSLY 99
Query: 209 AQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
A+ G V +F+ + +RD V +N++IS F +G+
Sbjct: 100 AK------------------------SGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGR 135
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNA 317
AL + + +KP T VSVL AC +L L +G LG FV NA
Sbjct: 136 GGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNA 195
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L D+Y RCG I ++R++F M +N+V+WN+MIS Y
Sbjct: 196 LTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGY 231
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 119/276 (43%), Gaps = 56/276 (20%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT M+ G E+ + LF M+ + RPD + V +C++L G+ V+
Sbjct: 290 WTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAF 349
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ + V L+D++ KCG + +
Sbjct: 350 LMGVNDDLLVSSALVDMYCKCG------------------------------VTRDAWTI 379
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
FS ++ +++VSWN+M+ GYAL G E +L + M++ +++P++++ GVL+AC
Sbjct: 380 FSTMQTRNVVSWNSMIGGYALNGQDLEALSLYE--NMLEENLKPDSVTFVGVLSACVHAG 437
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLS-TRDVVVWNSIISAFVRSGQVVD 271
V+ GK CS S + L T D + +++ F RSG +
Sbjct: 438 LVEEGKE------------------YFCSMSDQHGLEPTPD--HYACMVNLFGRSGHMDK 477
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
A+DL+ + + +PN++ +VL C+ + G
Sbjct: 478 AVDLISSM---SQEPNSLIWTTVLSVCVMKGDIKHG 510
>gi|15220977|ref|NP_173696.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|145323986|ref|NP_001077582.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75316139|sp|Q4V389.1|PPR55_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g22830
gi|66792712|gb|AAY56458.1| At1g22830 [Arabidopsis thaliana]
gi|332192171|gb|AEE30292.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332192172|gb|AEE30293.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 703
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 97/402 (24%), Positives = 186/402 (46%), Gaps = 53/402 (13%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G Q+HAH I G+E + L +L+ + W ++G Y
Sbjct: 102 GQQLHAHCISSGLEFDSVLVPKLVTFYSAFNLLDEAQTITENSEILHPLPWNVLIGSYIR 161
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
++E V+++ M+ KG+R D F P V KAC+ L D+ G+ V+ + N V
Sbjct: 162 NKRFQESVSVYKRMMSKGIRADEFTYPSVIKACAALLDFAYGRVVHGSIEVSSHRCNLYV 221
Query: 103 KRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK---- 157
L+ ++ + G++++ LF+ M ++D + N++I+ Y L + ++
Sbjct: 222 CNALISMYKRFGKVDVARRLFDRMSERDAVSWNAIINCYTSEEKLGEAFKLLDRMYLSGV 281
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+ +V+WN + G G N + + M +++ ++++ L AC+ + +K G
Sbjct: 282 EASIVTWNTIAGGCLEAGNYIGALNCV--VGMRNCNVRIGSVAMINGLKACSHIGALKWG 339
Query: 218 KAIHGYVLR-----HHIH--------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
K H V+R H I + + C + + VF Q+ + WNSIIS F
Sbjct: 340 KVFHCLVIRSCSFSHDIDNVRNSLITMYSRCSDLRHAFIVFQQVEANSLSTWNSIISGFA 399
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGSF---- 313
+ + + LL++++++ PN +T+ S+LP ++ L G L S+
Sbjct: 400 YNERSEETSFLLKEMLLSGFHPNHITLASILPLFARVGNLQHGKEFHCYILRRQSYKDCL 459
Query: 314 -VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+WN+L+DMY + G I ++++F M ++ V++ +I YG
Sbjct: 460 ILWNSLVDMYAKSGEIIAAKRVFDSMRKRDKVTYTSLIDGYG 501
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 120/234 (51%), Gaps = 26/234 (11%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V NSLI Y++C L+ + F +++ L +WN++++G+A EE + LL EM +
Sbjct: 359 VRNSLITMYSRCSDLRHAFIVFQQVEANSLSTWNSIISGFAYNERSEETSFLLKEM--LL 416
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH------------IHLSTACGFVI 239
+ PN I+L+ +L A+V ++ GK H Y+LR + + G +I
Sbjct: 417 SGFHPNHITLASILPLFARVGNLQHGKEFHCYILRRQSYKDCLILWNSLVDMYAKSGEII 476
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ VF+ + RD V + S+I + R G+ AL +D+ + +KP+ VT+V+VL AC
Sbjct: 477 AAKRVFDSMRKRDKVTYTSLIDGYGRLGKGEVALAWFKDMDRSGIKPDHVTMVAVLSACS 536
Query: 300 KLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFVLMPHK 341
+ +G + + ++ ++D+Y R G + K+R IF +P++
Sbjct: 537 HSNLVREGHWLFTKMEHVFGIRLRLEHYSCMVDLYCRAGYLDKARDIFHTIPYE 590
>gi|51970930|dbj|BAD44157.1| hypothetical protein [Arabidopsis thaliana]
Length = 703
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 97/402 (24%), Positives = 186/402 (46%), Gaps = 53/402 (13%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G Q+HAH I G+E + L +L+ + W ++G Y
Sbjct: 102 GQQLHAHCISSGLEFDSVLVPKLVTFYSAFNLLDEAQTITENSEILHPLPWNVLIGSYIR 161
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
++E V+++ M+ KG+R D F P V KAC+ L D+ G+ V+ + N V
Sbjct: 162 NKRFQESVSVYKRMMSKGIRADEFTYPSVIKACAALLDFAYGRVVHGSIEVSSHRCNLYV 221
Query: 103 KRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK---- 157
L+ ++ + G++++ LF+ M ++D + N++I+ Y L + ++
Sbjct: 222 CNALISMYKRFGKVDVARRLFDRMSERDAVSWNAIINCYTSEEKLGEAFKLLDRMYLSGV 281
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+ +V+WN + G G N + + M +++ ++++ L AC+ + +K G
Sbjct: 282 EASIVTWNTIAGGCLEAGNYIGALNCV--VGMRNCNVRIGSVAMINGLKACSHIGALKWG 339
Query: 218 KAIHGYVLR-----HHIH--------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
K H V+R H I + + C + + VF Q+ + WNSIIS F
Sbjct: 340 KVFHCLVIRSCSFSHDIDNVRNSLITMYSRCSDLRHAFIVFQQVEANSLSTWNSIISGFA 399
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGSF---- 313
+ + + LL++++++ PN +T+ S+LP ++ L G L S+
Sbjct: 400 YNERSEETSFLLKEMLLSGFHPNHITLASILPLFARVGNLQHGKEFHCYILRRQSYKDCL 459
Query: 314 -VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+WN+L+DMY + G I ++++F M ++ V++ +I YG
Sbjct: 460 ILWNSLVDMYAKSGEIIAAKRVFDSMRKRDKVTYTSLIDGYG 501
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 120/234 (51%), Gaps = 26/234 (11%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V NSLI Y++C L+ + F +++ L +WN++++G+A EE + LL EM +
Sbjct: 359 VRNSLITMYSRCSDLRHAFIVFQQVEANSLSTWNSIISGFAYNERSEETSFLLKEM--LL 416
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH------------IHLSTACGFVI 239
+ PN I+L+ +L A+V ++ GK H Y+LR + + G +I
Sbjct: 417 SGFHPNHITLASILPLFARVGNLQHGKEFHCYILRRQSYKDCLILWNSLVDMYAKSGEII 476
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ VF+ + RD V + S+I + R G+ AL +D+ + +KP+ VT+V+VL AC
Sbjct: 477 AAKRVFDSMRKRDKVTYTSLIDGYGRLGKGEVALAWFKDMDRSGIKPDHVTMVAVLSACS 536
Query: 300 KLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFVLMPHK 341
+ +G + + ++ ++D+Y R G + K+R IF +P++
Sbjct: 537 HSNLVREGHWLFTKMEHVFGIRLRLEHYSCMVDLYCRAGYLDKARDIFHTIPYE 590
>gi|302769798|ref|XP_002968318.1| hypothetical protein SELMODRAFT_599 [Selaginella moellendorffii]
gi|300163962|gb|EFJ30572.1| hypothetical protein SELMODRAFT_599 [Selaginella moellendorffii]
Length = 666
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 158/350 (45%), Gaps = 57/350 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W +++ Y G+ +E + LF M + G + PD V AC + G ++
Sbjct: 74 SWNAVITAYAQAGHCKEAMELFQAMQEDGRIEPDSVTFVAVVSACCDPSALEAGDKIFAL 133
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ +R LLD D ++ N+L++ Y+KC LK +
Sbjct: 134 V----------EERGLLD-------------------SDVVLGNALVNMYSKCGSLKSAT 164
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM-----IQTDMQPNTISLSGVL 205
F ++K +D+VSWNA+++ A ++ EM++ + + P+ +L+ L
Sbjct: 165 MVFERMKIRDVVSWNAIISALARHDRKDIAMQRFREMQLEGLSPKEEALLPDGFTLASAL 224
Query: 206 AACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVV 254
AAC + ++ G+ IH V+ + + CG + + F +++ R+VV
Sbjct: 225 AACTGPEMLEEGREIHALVIERGCESELVVGNALVSMYANCGTLQDALECFQKMAQRNVV 284
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF- 313
WN++I+A+V +A + + + V+PN+VT V+ L AC AA GL S
Sbjct: 285 SWNAMIAAYVHHNCDKEAFRIFHQMQLEGVQPNSVTFVTFLSACSTPAAFEDGLQLHSIV 344
Query: 314 ----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V NA++ M+ +C ++ + F +P KNL SWN ++ Y
Sbjct: 345 RESGLEADASVGNAVVHMFAKCWSLDDALAAFQRIPQKNLGSWNGLLGAY 394
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 125/266 (46%), Gaps = 35/266 (13%)
Query: 118 ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFR 177
I SGL ++ V N+L++ Y KC L ++ F + +D++SWNA++ YA G
Sbjct: 33 IESGLLTQIS----VGNALVNMYGKCGSLALAREVFDGMDHRDVISWNAVITAYAQAGHC 88
Query: 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH--------- 228
+E L M+ ++P++++ V++AC ++ G I V
Sbjct: 89 KEAMELFQAMQE-DGRIEPDSVTFVAVVSACCDPSALEAGDKIFALVEERGLLDSDVVLG 147
Query: 229 ---IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK 285
+++ + CG + + VF ++ RDVV WN+IISA R + A+ R++ + +
Sbjct: 148 NALVNMYSKCGSLKSATMVFERMKIRDVVSWNAIISALARHDRKDIAMQRFREMQLEGLS 207
Query: 286 -------PNTVTIVSVLPACLKLAALPQGLGTGSF-----------VWNALIDMYGRCGA 327
P+ T+ S L AC L +G + V NAL+ MY CG
Sbjct: 208 PKEEALLPDGFTLASALAACTGPEMLEEGREIHALVIERGCESELVVGNALVSMYANCGT 267
Query: 328 IQKSRKIFVLMPHKNLVSWNVMISVY 353
+Q + + F M +N+VSWN MI+ Y
Sbjct: 268 LQDALECFQKMAQRNVVSWNAMIAAY 293
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 125/279 (44%), Gaps = 55/279 (19%)
Query: 127 DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDE 186
+ + +V N+L+ YA C L+ + F K+ Q+++VSWNAM+A Y +E + +
Sbjct: 249 ESELVVGNALVSMYANCGTLQDALECFQKMAQRNVVSWNAMIAAYVHHNCDKEAFRIFHQ 308
Query: 187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACG------FVIC 240
M++ +QPN+++ L+AC+ + G +H V + + G F C
Sbjct: 309 MQL--EGVQPNSVTFVTFLSACSTPAAFEDGLQLHSIVRESGLEADASVGNAVVHMFAKC 366
Query: 241 ------------------------------------SCSVFNQLSTRDVVVWNSIISAFV 264
+ +F + RDV+ WN I+ A+V
Sbjct: 367 WSLDDALAAFQRIPQKNLGSWNGLLGAYIHVGRLAEARKLFEVMEERDVITWNMILGAYV 426
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LGTGS--F 313
+A+ L R +I K N++T ++L AC A L +G G S F
Sbjct: 427 EREMAKEAVRLFRRMIAEGTKSNSITWTTMLGACAGEALLAEGRRIHELIGERGADSELF 486
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
V NAL+DM+G+C ++ +R+ F + K+ SWNV+++
Sbjct: 487 VGNALVDMFGKCASLGGARQAFERIRGKDASSWNVLVAA 525
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 84/426 (19%), Positives = 155/426 (36%), Gaps = 104/426 (24%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+E G ++HA +I G E +G+ L+ ++ N W +M+
Sbjct: 233 LEEGREIHALVIERGCESELVVGNALVSMYANCGTLQDALECFQKMAQRNVVSWNAMIAA 292
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y +E +F+ M +GV+P+ ACS + G ++ + E +
Sbjct: 293 YVHHNCDKEAFRIFHQMQLEGVQPNSVTFVTFLSACSTPAAFEDGLQLHSIVRESGLEAD 352
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
A V N+++ +AKC L + F +I QK
Sbjct: 353 ASV------------------------------GNAVVHMFAKCWSLDDALAAFQRIPQK 382
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEME-----------------------------MI 190
+L SWN +L Y G E L + ME MI
Sbjct: 383 NLGSWNGLLGAYIHVGRLAEARKLFEVMEERDVITWNMILGAYVEREMAKEAVRLFRRMI 442
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVI 239
+ N+I+ + +L ACA + G+ IH +V + + C +
Sbjct: 443 AEGTKSNSITWTTMLGACAGEALLAEGRRIHELIGERGADSELFVGNALVDMFGKCASLG 502
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ F ++ +D WN +++A ++G +AL + +KP VT + V AC
Sbjct: 503 GARQAFERIRGKDASSWNVLVAALAQNGDAEEALKQFLQMQREGIKPTDVTFIVVFWACS 562
Query: 300 KLAALPQ------------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSW 346
L Q G+ ++ + D+ GR G + ++ ++ +P ++ + W
Sbjct: 563 HAGRLEQAKTIFASLRHDYGIAPLPSHYSGMTDLLGRAGFLDEAEEVIKRIPFSQDELPW 622
Query: 347 NVMISV 352
++S
Sbjct: 623 MTLLSA 628
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 49/80 (61%), Gaps = 11/80 (13%)
Query: 286 PNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKI 334
P+ V+ ++ L +C+++ +L GL T V NAL++MYG+CG++ +R++
Sbjct: 4 PDNVSFITALKSCVRIQSLAAGKFIHLLVIESGLLTQISVGNALVNMYGKCGSLALAREV 63
Query: 335 FVLMPHKNLVSWNVMISVYG 354
F M H++++SWN +I+ Y
Sbjct: 64 FDGMDHRDVISWNAVITAYA 83
>gi|449476231|ref|XP_004154679.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like, partial [Cucumis sativus]
Length = 472
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 93/381 (24%), Positives = 165/381 (43%), Gaps = 79/381 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNV 42
G+++HAHLI G F+ + LL + +WTS++ +
Sbjct: 37 GLEIHAHLIKSGHLSDIFIQNSLLHFYILDGDVSSASLIFDSIPDPDVVSWTSIISGLSK 96
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
LG+ +E ++ F M VRP+ CS L+ ++GK ++
Sbjct: 97 LGFEKEALSKFLSM---NVRPNSTTLVTALSTCSSLRCLKLGKAIHGL------------ 141
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
RM + +++ ++ N+L+DFY +C YL+ + F K+ ++D+V
Sbjct: 142 ------------RMRTLN------EENVILENALLDFYVRCAYLRSAENLFEKMPKRDVV 183
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW M+ GYA G EE + M + + PN +L VL+AC+ + + LG+ +H
Sbjct: 184 SWTTMIGGYAQSGLCEEAVRVFQNMVHVGEAI-PNEATLVNVLSACSSISALHLGQWVHS 242
Query: 223 YVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y+ H I++ CG + + +F +D+V W++IIS +G
Sbjct: 243 YINSRHDVIIDGNVGNALINMYVKCGNMEMAILIFKATEHKDIVSWSTIISGLAMNGLGK 302
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL---GTGSFVWN---------AL 318
A L ++V + P+ VT + +L AC + QG+ V+N +
Sbjct: 303 QAFVLFSLMLVHGISPDDVTFLGLLSACSHGGLINQGMMVFEAMKDVYNISPQMRHYACM 362
Query: 319 IDMYGRCGAIQKSRKIFVLMP 339
+DMYG+ G + ++ MP
Sbjct: 363 VDMYGKAGLLDEAEAFIKEMP 383
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 152/315 (48%), Gaps = 59/315 (18%)
Query: 61 VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITS 120
+ +HF KAC L + G +++ ++I K G +
Sbjct: 14 ISHNHFTFTYALKACCFLHQTQKGLEIHAHLI-------------------KSGHL---- 50
Query: 121 GLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEV 180
D + NSL+ FY + + F I D+VSW ++++G + GF +E
Sbjct: 51 -------SDIFIQNSLLHFYILDGDVSSASLIFDSIPDPDVVSWTSIISGLSKLGFEKEA 103
Query: 181 TNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTA-- 234
+ + + +++PN+ +L L+ C+ ++ +KLGKAIHG +R ++ L A
Sbjct: 104 LS-----KFLSMNVRPNSTTLVTALSTCSSLRCLKLGKAIHGLRMRTLNEENVILENALL 158
Query: 235 -----CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI-VANVKPNT 288
C ++ + ++F ++ RDVV W ++I + +SG +A+ + ++++ V PN
Sbjct: 159 DFYVRCAYLRSAENLFEKMPKRDVVSWTTMIGGYAQSGLCEEAVRVFQNMVHVGEAIPNE 218
Query: 289 VTIVSVLPACLKLAALPQGLGTGSF------------VWNALIDMYGRCGAIQKSRKIFV 336
T+V+VL AC ++AL G S+ V NALI+MY +CG ++ + IF
Sbjct: 219 ATLVNVLSACSSISALHLGQWVHSYINSRHDVIIDGNVGNALINMYVKCGNMEMAILIFK 278
Query: 337 LMPHKNLVSWNVMIS 351
HK++VSW+ +IS
Sbjct: 279 ATEHKDIVSWSTIIS 293
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 25/180 (13%)
Query: 197 NTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVF 245
N + + L AC + + G IH ++++ +H G V + +F
Sbjct: 17 NHFTFTYALKACCFLHQTQKGLEIHAHLIKSGHLSDIFIQNSLLHFYILDGDVSSASLIF 76
Query: 246 NQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----LK 300
+ + DVV W SIIS + G +AL + NV+PN+ T+V+ L C LK
Sbjct: 77 DSIPDPDVVSWTSIISGLSKLGFEKEALS---KFLSMNVRPNSTTLVTALSTCSSLRCLK 133
Query: 301 LAALPQGLGTGSF------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L GL + + NAL+D Y RC ++ + +F MP +++VSW MI Y
Sbjct: 134 LGKAIHGLRMRTLNEENVILENALLDFYVRCAYLRSAENLFEKMPKRDVVSWTTMIGGYA 193
>gi|15233645|ref|NP_195514.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213618|sp|Q9SZK1.1|PP355_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g38010
gi|4467107|emb|CAB37541.1| putative protein [Arabidopsis thaliana]
gi|7270784|emb|CAB80466.1| putative protein [Arabidopsis thaliana]
gi|332661463|gb|AEE86863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 152/344 (44%), Gaps = 62/344 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
++ +++ Y V + + + G PD F P V+KAC + R GK ++ +
Sbjct: 73 SYNTLLSSYAVCDKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGIV 132
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F D V NSL+ FY C + +
Sbjct: 133 TKMGFY------------------------------DDIYVQNSLVHFYGVCGESRNACK 162
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +D+VSW ++ G+ G +E + +M D++PN + VL + +V
Sbjct: 163 VFGEMPVRDVVSWTGIITGFTRTGLYKEALDTFSKM-----DVEPNLATYVCVLVSSGRV 217
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACG------FVIC-----SCSVFNQLSTRDVVVWNSII 260
+ LGK IHG +L+ +S G +V C + VF +L +D V WNS+I
Sbjct: 218 GCLSLGKGIHGLILKRASLISLETGNALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMI 277
Query: 261 SAFV---RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTG 311
S V RS + +D L++ + +KP+ + SVL AC L A+ G + T
Sbjct: 278 SGLVHCERSKEAIDLFSLMQ--TSSGIKPDGHILTSVLSACASLGAVDHGRWVHEYILTA 335
Query: 312 SFVWN-----ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
W+ A++DMY +CG I+ + +IF + KN+ +WN ++
Sbjct: 336 GIKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNVFTWNALL 379
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 124/278 (44%), Gaps = 34/278 (12%)
Query: 103 KRPLLDLFIKCGRMEI-----TSGLFEEMDQDFLVNNSLIDFYAK-CRYLKVSHCKFSKI 156
K LL+L +C + + T + ++ +D L+ N ++ F K + S I
Sbjct: 6 KSVLLELISRCSSLRVFKQIQTQLITRDLLRDDLIINKVVTFLGKSADFASYSSVILHSI 65
Query: 157 KQK-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
+ S+N +L+ YA+ + VT + + P+ + V AC + G++
Sbjct: 66 RSVLSSFSYNTLLSSYAVCD-KPRVT-IFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIR 123
Query: 216 LGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
GK IHG YV +H CG +C VF ++ RDVV W II+ F
Sbjct: 124 EGKQIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFT 183
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW--------- 315
R+G +ALD + +V+PN T V VL + ++ L G G +
Sbjct: 184 RTGLYKEALDTFSKM---DVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLE 240
Query: 316 --NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
NALIDMY +C + + ++F + K+ VSWN MIS
Sbjct: 241 TGNALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMIS 278
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 117/274 (42%), Gaps = 54/274 (19%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W SM+ +E ++LF LM G++PD + V AC+ L G+ V++Y
Sbjct: 272 SWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHILTSVLSACASLGAVDHGRWVHEY 331
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
++ T+G+ D + +++D YAKC Y++ +
Sbjct: 332 IL--------------------------TAGI----KWDTHIGTAIVDMYAKCGYIETAL 361
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F+ I+ K++ +WNA+L G A+ G E + EM++ +PN ++ L AC
Sbjct: 362 EIFNGIRSKNVFTWNALLGGLAIHGHGLESLRYFE--EMVKLGFKPNLVTFLAALNACCH 419
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
V G R + H + + ++F +L + +I R+G +
Sbjct: 420 TGLVDEG--------RRYFHKMKSREY-----NLFPKLEH-----YGCMIDLLCRAGLLD 461
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL 304
+AL+L++ VKP+ ++L AC L
Sbjct: 462 EALELVK---AMPVKPDVRICGAILSACKNRGTL 492
>gi|224094065|ref|XP_002310070.1| predicted protein [Populus trichocarpa]
gi|222852973|gb|EEE90520.1| predicted protein [Populus trichocarpa]
Length = 438
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 152/309 (49%), Gaps = 27/309 (8%)
Query: 56 MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR 115
M+ G+ PDH P + KA S L +G ++ ++I FE + V L+ ++ CG
Sbjct: 1 MLQVGIYPDHLTYPFLAKATSRLLRKELGVSIHGHVIKSGFEIDRFVANSLIHMYGSCGD 60
Query: 116 MEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALG 174
+ +F+ LV+ NS++D YAKC YL ++ F + ++D+ SW+ ++ GYA
Sbjct: 61 IVYARKVFDGTPVKNLVSWNSMVDGYAKCGYLDLARGLFDLMPERDVRSWSCLIDGYAKS 120
Query: 175 GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS-- 232
G + + ++M + + N +++ VL ACA + + G+ +H Y++ + L+
Sbjct: 121 GNYGDAMAVFEKMR--TSGPKANEVTMVSVLCACAHLGALDKGRMMHQYLVDNGFELNLV 178
Query: 233 ---------TACGFVICSCSVFNQLSTR--DVVVWNSIISAFVRSGQVVDALDLLRDVIV 281
CG V + +VF +S R DV++WN++I G V ++LDL ++ +
Sbjct: 179 LRTSLIDMYAKCGAVEEAFAVFRGVSLRKSDVLIWNAMIGGLATHGLVKESLDLYTEMQI 238
Query: 282 ANVKPNTVTIVSVLPACLKLAALPQ------GLGTGSFV-----WNALIDMYGRCGAIQK 330
A +KP+ +T + +L AC + Q GLG + ++D+ R G + +
Sbjct: 239 AGIKPDEITFLCLLSACAHGGLVKQASYVFEGLGKNGMTPKTEHYACMVDVMARAGQVAE 298
Query: 331 SRKIFVLMP 339
+ + MP
Sbjct: 299 AYQFLCQMP 307
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 99/218 (45%), Gaps = 55/218 (25%)
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGF 237
M+Q + P+ ++ + A +++ +LG +IHG+V++ IH+ +CG
Sbjct: 1 MLQVGIYPDHLTYPFLAKATSRLLRKELGVSIHGHVIKSGFEIDRFVANSLIHMYGSCGD 60
Query: 238 VICSCSVFNQLSTRDVVVWNS-------------------------------IISAFVRS 266
++ + VF+ +++V WNS +I + +S
Sbjct: 61 IVYARKVFDGTPVKNLVSWNSMVDGYAKCGYLDLARGLFDLMPERDVRSWSCLIDGYAKS 120
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTGSFVWN---- 316
G DA+ + + + K N VT+VSVL AC L AL +G L F N
Sbjct: 121 GNYGDAMAVFEKMRTSGPKANEVTMVSVLCACAHLGALDKGRMMHQYLVDNGFELNLVLR 180
Query: 317 -ALIDMYGRCGAIQKSRKIF--VLMPHKNLVSWNVMIS 351
+LIDMY +CGA++++ +F V + +++ WN MI
Sbjct: 181 TSLIDMYAKCGAVEEAFAVFRGVSLRKSDVLIWNAMIG 218
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 79/339 (23%), Positives = 139/339 (41%), Gaps = 73/339 (21%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMY 40
ELG+ +H H+I G E+ F+ + L+ ++ +W SM+ Y
Sbjct: 27 ELGVSIHGHVIKSGFEIDRFVANSLIHMYGSCGDIVYARKVFDGTPVKNLVSWNSMVDGY 86
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN- 99
GY + LF LM ++ VR + C + ++ +Y V++ M + + N
Sbjct: 87 AKCGYLDLARGLFDLMPERDVRS--WSC--LIDGYAKSGNYGDAMAVFEKMRTSGPKANE 142
Query: 100 --------ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
AC LD GRM + + + ++ SLID YAKC ++ +
Sbjct: 143 VTMVSVLCACAHLGALDK----GRMMHQYLVDNGFELNLVLRTSLIDMYAKCGAVEEAFA 198
Query: 152 KFS--KIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F +++ D++ WNAM+ G A G +E +L EM++ ++P+ I+ +L+ACA
Sbjct: 199 VFRGVSLRKSDVLIWNAMIGGLATHGLVKESLDLYTEMQI--AGIKPDEITFLCLLSACA 256
Query: 210 QVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLS----TRDVVVWNSIISAFVR 265
HG G V + VF L T + ++ R
Sbjct: 257 -----------HG-------------GLVKQASYVFEGLGKNGMTPKTEHYACMVDVMAR 292
Query: 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL 304
+GQV +A L + ++P + ++L C+ L
Sbjct: 293 AGQVAEAYQFLCQM---PLEPTASMLGALLSGCMNHGKL 328
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 30/50 (60%)
Query: 304 LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ G FV N+LI MYG CG I +RK+F P KNLVSWN M+ Y
Sbjct: 37 IKSGFEIDRFVANSLIHMYGSCGDIVYARKVFDGTPVKNLVSWNSMVDGY 86
>gi|115477555|ref|NP_001062373.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|50725675|dbj|BAD33141.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113624342|dbj|BAF24287.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|215697775|dbj|BAG91968.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 581
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 140/289 (48%), Gaps = 34/289 (11%)
Query: 86 DVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRY 145
D Y I+I +A + P LD+ G L + D V N+LI+ Y+ C Y
Sbjct: 92 DNYSLNIAI----SAAARVPSLDV----GSQFHALSLKLSLASDSFVLNALINMYSSCNY 143
Query: 146 LKVSHCKFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSG 203
+ + D+VSWN ++AGY GG + +M Q + + ++L
Sbjct: 144 PASARLVLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRL--DEVTLLN 201
Query: 204 VLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRD 252
VL ACA+ +K+G H Y+ + + CG V + VFN++ R+
Sbjct: 202 VLVACARTGAMKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERN 261
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP------- 305
VV W S+I+ +SG+ +A+DL RD+ +A VK + TI +V+ +C ++ AL
Sbjct: 262 VVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHA 321
Query: 306 ----QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
GLG V N+LIDMY +CG + K+ +IF + +++ +W VMI
Sbjct: 322 YCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMI 370
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 147/344 (42%), Gaps = 57/344 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ Y G + + F+ M + VR D V AC+ +VG + +
Sbjct: 163 SWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALV 222
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ FE I C + +SL+ YAKC ++ +
Sbjct: 223 VLNGFE-------------INC-----------------YIGSSLVSMYAKCGMVEEARR 252
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+++ ++++V W +M+AG G +E +L +M++ TI+ V+++C Q+
Sbjct: 253 VFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIAT--VVSSCGQM 310
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ LG+ +H Y H I + + CG V + +F+ L+ RDV W +I
Sbjct: 311 GALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMI 370
Query: 261 SAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPACLKLAALPQG---LGTGSFVWN 316
F +G V+ALDL + + V PN V + VL AC + QG S V+N
Sbjct: 371 MGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYN 430
Query: 317 ---------ALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
++D+ GR + ++ + MP ++V W ++
Sbjct: 431 LVPRIEHYGCMVDLLGRAKLLAEAEQFIKDMPVAPDVVVWRSLL 474
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 90/184 (48%), Gaps = 24/184 (13%)
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVIC 240
+M + SL+ ++A A+V + +G H +VL I++ ++C +
Sbjct: 87 ANMTLDNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPAS 146
Query: 241 SCSVFNQLS--TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ V + DVV WN+II+ ++R G AL + V+ + VT+++VL AC
Sbjct: 147 ARLVLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVAC 206
Query: 299 LKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
+ A+ G ++ ++L+ MY +CG ++++R++F MP +N+V W
Sbjct: 207 ARTGAMKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWT 266
Query: 348 VMIS 351
MI+
Sbjct: 267 SMIA 270
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 136/319 (42%), Gaps = 74/319 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
M++G HA +++ G E+ ++GS L+ ++ WTSM+
Sbjct: 212 MKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAG 271
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
G ++E V+LF M GV+ D V +C ++ +G+ ++ Y +G+
Sbjct: 272 CTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYC-----DGH 326
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
GL +E+ V NSLID Y+KC + ++ F + ++
Sbjct: 327 ---------------------GLGKELS----VKNSLIDMYSKCGDVNKAYQIFHGLTKR 361
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+ +W M+ G+A+ G E +L +ME + + PN + GVL AC+ G
Sbjct: 362 DVFTWTVMIMGFAMNGLCVEALDLFAQMEG-EDKVMPNEVIFLGVLTACSHG-----GLV 415
Query: 220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279
GY HH H + V+N + + + ++ R+ + +A ++D+
Sbjct: 416 EQGY---HHFHRMS---------KVYNLVPR--IEHYGCMVDLLGRAKLLAEAEQFIKDM 461
Query: 280 IVANVKPNTVTIVSVLPAC 298
VA P+ V S+L AC
Sbjct: 462 PVA---PDVVVWRSLLFAC 477
>gi|302795364|ref|XP_002979445.1| hypothetical protein SELMODRAFT_110780 [Selaginella moellendorffii]
gi|300152693|gb|EFJ19334.1| hypothetical protein SELMODRAFT_110780 [Selaginella moellendorffii]
Length = 637
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 125/252 (49%), Gaps = 30/252 (11%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKD-LVSWNAMLAGYALGGFREEVTNLLDEMEM 189
+ N+LI Y C + + F +I ++ VSWN+M+AGYA F +E L M++
Sbjct: 93 FLGNTLITMYGSCGDVDRAKKAFDRIDSRNNTVSWNSMIAGYAQNAFSKEALKLFKAMDL 152
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVI---------C 240
QPN ++ L A + + G AIH VL H TA + C
Sbjct: 153 --QGFQPNKVTFVSALDAAGNLGALPEGSAIHEEVLEHDCETDTAVATALINFFGKCPYC 210
Query: 241 SC-------SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
++F+++ RD V W++++ A+ +S Q +++L + + V KP T +S
Sbjct: 211 QSGDPHQVQAIFDRMRDRDDVSWSTLVGAYAQSNQHRTSMELFKKMDVEGYKPTRFTFMS 270
Query: 294 VLPACLKLAALPQG------LGTGSFVW-----NALIDMYGRCGAIQKSRKIFVLMPHKN 342
V+ AC KL+AL +G + + W N +++M+GRCG++++S F M ++
Sbjct: 271 VVDACGKLSALREGRVLHSSIMNSALKWDVVLQNGIVNMFGRCGSVEESSSAFQEMLQRD 330
Query: 343 LVSWNVMISVYG 354
VSW++MIS +
Sbjct: 331 AVSWSIMISAFA 342
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/338 (20%), Positives = 133/338 (39%), Gaps = 60/338 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y + +E + LF M +G +P+ A L G +++ +
Sbjct: 126 SWNSMIAGYAQNAFSKEALKLFKAMDLQGFQPNKVTFVSALDAAGNLGALPEGSAIHEEV 185
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS-- 149
+ + + D V +LI+F+ KC Y +
Sbjct: 186 LE------------------------------HDCETDTAVATALINFFGKCPYCQSGDP 215
Query: 150 ---HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
F +++ +D VSW+ ++ YA L +M++ +P + V+
Sbjct: 216 HQVQAIFDRMRDRDDVSWSTLVGAYAQSNQHRTSMELFKKMDV--EGYKPTRFTFMSVVD 273
Query: 207 ACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVV 255
AC ++ ++ G+ +H ++ +++ CG V S S F ++ RD V
Sbjct: 274 ACGKLSALREGRVLHSSIMNSALKWDVVLQNGIVNMFGRCGSVEESSSAFQEMLQRDAVS 333
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-----T 310
W+ +ISAF +G +AL+ + + P+ +T VS+L C L G
Sbjct: 334 WSIMISAFAHNGHGAEALETFLAMNLDGQTPDELTFVSILSVCAHAGLLRDARGHLVDMV 393
Query: 311 GSFV-------WNALIDMYGRCGAIQKSRKIFVLMPHK 341
G + + L+D+ R G + + ++ MP++
Sbjct: 394 GDYALVPGLDHYVCLVDLLCRSGRLGAAEELVETMPYE 431
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 195 QPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCS 243
+P+ + + +L CA + + LG+ +H + R I + +CG V +
Sbjct: 54 KPDLETYASLLRQCASARALDLGQLLHEEIARRRFDGYTFLGNTLITMYGSCGDVDRAKK 113
Query: 244 VFNQLSTR-DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
F+++ +R + V WNS+I+ + ++ +AL L + + + +PN VT VS L A L
Sbjct: 114 AFDRIDSRNNTVSWNSMIAGYAQNAFSKEALKLFKAMDLQGFQPNKVTFVSALDAAGNLG 173
Query: 303 ALPQGLG-----------TGSFVWNALIDMYGRC-----GAIQKSRKIFVLMPHKNLVSW 346
ALP+G T + V ALI+ +G+C G + + IF M ++ VSW
Sbjct: 174 ALPEGSAIHEEVLEHDCETDTAVATALINFFGKCPYCQSGDPHQVQAIFDRMRDRDDVSW 233
Query: 347 NVMISVYG 354
+ ++ Y
Sbjct: 234 STLVGAYA 241
>gi|345505208|gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
Length = 615
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 166/322 (51%), Gaps = 29/322 (9%)
Query: 52 LFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111
LF+LM+ GV D F V KACS L + G + ++ + ++ L+ L++
Sbjct: 110 LFFLMLKNGVSVDKFSLSLVLKACSRLGFVKEGMQXHGFLRKTGIWSDLFLQNCLIGLYL 169
Query: 112 KCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSHCKFSKI--KQKDLVSWNAML 168
KCG + +F+ M Q D + NS+ID Y KC ++ + F + ++K+L+SWN+M+
Sbjct: 170 KCGCLGFARQVFDRMSQRDSVSYNSMIDGYVKCGLIESARELFDLMPSEKKNLISWNSMI 229
Query: 169 AGYALGGFREEV-TNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH 227
GYA ++ +NL DEM + + IS + ++ + ++ K + + R
Sbjct: 230 NGYAQRADGVDIASNLFDEMP------EKDLISWNSLIDGYVKHGRIEDAKDLFDKMPRR 283
Query: 228 H-------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV- 279
+ GFV + S+F+Q+ RDVV +NS+++ +V++ ++A+D+ D+
Sbjct: 284 DVVTWATMVDGYAKLGFVHQAKSLFDQMPQRDVVAYNSMMAGYVQNRYHMEAIDIFNDME 343
Query: 280 IVANVKPNTVTIVSVLPACLKLAALPQGLGT-----------GSFVWNALIDMYGRCGAI 328
+++ P+ T+V VL A +L L + + G + ALIDMY +CG+I
Sbjct: 344 KESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYTVEKKFLLGGKLGVALIDMYSKCGSI 403
Query: 329 QKSRKIFVLMPHKNLVSWNVMI 350
Q++ +F + +K++ WN MI
Sbjct: 404 QQAMGVFERIENKSIDHWNAMI 425
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 132/272 (48%), Gaps = 26/272 (9%)
Query: 106 LLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
L+D ++K GR+E LF++M + D + +++D YAK ++ + F ++ Q+D+V++
Sbjct: 260 LIDGYVKHGRIEDAKDLFDKMPRRDVVTWATMVDGYAKLGFVHQAKSLFDQMPQRDVVAY 319
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
N+M+AGY + E ++ ++ME ++ + P+ +L VL+A AQ+ + +H Y
Sbjct: 320 NSMMAGYVQNRYHMEAIDIFNDMEK-ESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYT 378
Query: 225 LRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
+ I + + CG + + VF ++ + + WN++I G A
Sbjct: 379 VEKKFLLGGKLGVALIDMYSKCGSIQQAMGVFERIENKSIDHWNAMIGGLAIHGLGESAF 438
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNALIDM 321
D+L + ++KP+ +T V VL AC + +GL + + ++D+
Sbjct: 439 DMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMKRKHKIEPRLQHYGCMVDI 498
Query: 322 YGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
R G I+ ++ + MP N V W ++
Sbjct: 499 LSRSGRIELAKNLIEEMPIEPNDVIWRTFLTA 530
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 111/237 (46%), Gaps = 29/237 (12%)
Query: 140 YAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI 199
+A+C + + +D WNA++ ++ G E LL M++ + +
Sbjct: 67 FARCVFHEYHVSSXXSGNVEDPFLWNAVIKSHSHG--VEPRKALLLFFLMLKNGVSVDKF 124
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQL 248
SLS VL AC+++ VK G HG++ + I L CG + + VF+++
Sbjct: 125 SLSLVLKACSRLGFVKEGMQXHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRM 184
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL 308
S RD V +NS+I +V+ G + A +L ++ + K N ++ S++ + A G+
Sbjct: 185 SQRDSVSYNSMIDGYVKCGLIESARELFD--LMPSEKKNLISWNSMINGYAQRA---DGV 239
Query: 309 GTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
S WN+LID Y + G I+ ++ +F MP +++V+W M+ Y
Sbjct: 240 DIASNLFDEMPEKDLISWNSLIDGYVKHGRIEDAKDLFDKMPRRDVVTWATMVDGYA 296
>gi|302816964|ref|XP_002990159.1| hypothetical protein SELMODRAFT_131170 [Selaginella moellendorffii]
gi|300142014|gb|EFJ08719.1| hypothetical protein SELMODRAFT_131170 [Selaginella moellendorffii]
Length = 849
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 93/346 (26%), Positives = 165/346 (47%), Gaps = 58/346 (16%)
Query: 31 CNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
CN +M+ Y LGY + V+ F + G++P+ +++AC+ Y + +
Sbjct: 252 CN--AMISAYIQLGYTVDAVSTFNRIQPSGLQPNQVTYALLFRACATNGVYSDARVAHMC 309
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
I K RP D +VN +L+ Y++C L+ +
Sbjct: 310 FILSKL-------RP-----------------------DVVVNTALVSMYSRCGSLEDAR 339
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ K++V+WN M+AGYA G+ +E L ME ++P+ I+ VL +C+
Sbjct: 340 RVFDRMPGKNVVTWNVMIAGYAQEGYTDEALQLYVSME--AAGVEPDEITFVNVLESCSL 397
Query: 211 VKGVKLGKAIH------GY-----VLRHHIHLSTACGFVICSCSVFNQLST--RDVVVWN 257
+ + G+ IH GY VL I + +ACG + + VF++ T V+ W
Sbjct: 398 AEHLAAGRDIHKHVVDAGYDSSLTVLSALITMYSACGSLGDAVDVFHKGVTTHSSVISWT 457
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-------T 310
++++A R+G+ AL L R + + V+ N VT VS + AC + AL +G T
Sbjct: 458 AMLTALTRNGEGRSALALFRKMDLEGVRANVVTFVSTIDACSSIGALVEGHAIFERVIVT 517
Query: 311 GSFV----WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
G + +LI++YG+CG + + ++F + KN+V+WN +++
Sbjct: 518 GHLIDVVLGTSLINLYGKCGRLDYALEVFHYLSFKNIVTWNTILAA 563
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 126/249 (50%), Gaps = 25/249 (10%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D L+ N +++ Y KC +K + FS I+ ++ SW +LA YA G + V LL +M+
Sbjct: 115 DRLLLNCVVEAYGKCGCVKDARLVFSSIRHPNVYSWTILLAAYAQNGHHKTVLELLRQMD 174
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV-----LRHHIHLSTA-------CG 236
++ + PN ++L+ V+ A +++ + IH L + + L TA CG
Sbjct: 175 LL--GVWPNAVTLATVIGAVSELGNWDEARKIHARAAATCQLTYDVVLVTALIDMYAKCG 232
Query: 237 FVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296
+ + VF+Q +D+ N++ISA+++ G VDA+ + + ++PN VT +
Sbjct: 233 DIFHAEVVFDQARNKDLACCNAMISAYIQLGYTVDAVSTFNRIQPSGLQPNQVTYALLFR 292
Query: 297 ACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
AC L V AL+ MY RCG+++ +R++F MP KN+V+
Sbjct: 293 ACATNGVYSDARVAHMCFILSKLRPDVVVNTALVSMYSRCGSLEDARRVFDRMPGKNVVT 352
Query: 346 WNVMISVYG 354
WNVMI+ Y
Sbjct: 353 WNVMIAGYA 361
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/345 (23%), Positives = 154/345 (44%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT ++ Y G+++ ++ L M GV P+ V A SEL ++ + ++
Sbjct: 149 SWTILLAAYAQNGHHKTVLELLRQMDLLGVWPNAVTLATVIGAVSELGNWDEARKIH--- 205
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
R T ++ D ++ +LID YAKC + +
Sbjct: 206 ----------------------ARAAATC----QLTYDVVLVTALIDMYAKCGDIFHAEV 239
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + + KDL NAM++ Y G+ + + + ++ + +QPN ++ + + ACA
Sbjct: 240 VFDQARNKDLACCNAMISAYIQLGYTVDAVSTFNRIQ--PSGLQPNQVTYALLFRACATN 297
Query: 212 KGVKLGKAIHG----YVLRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ H LR + ++TA CG + + VF+++ ++VV WN +I
Sbjct: 298 GVYSDARVAHMCFILSKLRPDVVVNTALVSMYSRCGSLEDARRVFDRMPGKNVVTWNVMI 357
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL---KLAA--------LPQGLG 309
+ + + G +AL L + A V+P+ +T V+VL +C LAA + G
Sbjct: 358 AGYAQEGYTDEALQLYVSMEAAGVEPDEITFVNVLESCSLAEHLAAGRDIHKHVVDAGYD 417
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFV--LMPHKNLVSWNVMISV 352
+ V +ALI MY CG++ + +F + H +++SW M++
Sbjct: 418 SSLTVLSALITMYSACGSLGDAVDVFHKGVTTHSSVISWTAMLTA 462
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/331 (19%), Positives = 136/331 (41%), Gaps = 53/331 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W M+ Y GY +E + L+ M GV PD V ++CS + G+D++ ++
Sbjct: 352 TWNVMIAGYAQEGYTDEALQLYVSMEAAGVEPDEITFVNVLESCSLAEHLAAGRDIHKHV 411
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ ++ + V L+ ++ CG + +D + K
Sbjct: 412 VDAGYDSSLTVLSALITMYSACGSL-----------------GDAVDVFHK--------- 445
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
++SW AML G L +M++ ++ N ++ + AC+ +
Sbjct: 446 --GVTTHSSVISWTAMLTALTRNGEGRSALALFRKMDL--EGVRANVVTFVSTIDACSSI 501
Query: 212 KGVKLGKAIHGYVL-----------RHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ G AI V+ I+L CG + + VF+ LS +++V WN+I+
Sbjct: 502 GALVEGHAIFERVIVTGHLIDVVLGTSLINLYGKCGRLDYALEVFHYLSFKNIVTWNTIL 561
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG----------- 309
+A ++G+ + +LL+++ + +PN +T++++L C + + +
Sbjct: 562 AASSQNGEETLSDELLQEMDLDGAQPNEMTLLNMLFGCSHNGLVAKAVSYFRSMVYGHCL 621
Query: 310 -TGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
S + L+D+ GR G +++ P
Sbjct: 622 VPTSEHYGCLVDLLGRSGQLEEVEAFISSKP 652
>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 685
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 85/395 (21%), Positives = 169/395 (42%), Gaps = 77/395 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
+LGI +H+ ++ CG + LL ++ WT++ Y
Sbjct: 128 KLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGY 187
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G + E ++LF M++ GVRPD + +V AC + D G+ + +M +
Sbjct: 188 TTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEM------ 241
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
EM ++ V +L++ YAKC ++ + F + +KD
Sbjct: 242 ------------------------EMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKD 277
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+V+W+ M+ GYA F +E ++M+Q +++P+ S+ G L++CA + + LG+
Sbjct: 278 IVTWSTMIQGYASNSFPKEGIEFF--LQMLQENLKPDQFSIVGFLSSCASLGALDLGEWG 335
Query: 221 HGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
+ RH I + CG + VF ++ +D+V+ N+ IS ++G V
Sbjct: 336 ISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHV 395
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNA 317
+ + + P+ T + +L C+ + GL + + +
Sbjct: 396 KLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGC 455
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMIS 351
++D++GR G + + ++ MP + N + W ++S
Sbjct: 456 MVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLS 490
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 158/353 (44%), Gaps = 55/353 (15%)
Query: 21 FLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD 80
F +Q +F T + G N + E ++LF + G+ F P V KAC+ +
Sbjct: 68 FSHTQFPNIFLYNTLINGFVNN-HLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASN 126
Query: 81 YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFY 140
++G D++ L +KCG + D SL+ Y
Sbjct: 127 RKLGIDLHS-------------------LVVKCG-----------FNHDVAAMTSLLSIY 156
Query: 141 AKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTIS 200
+ L +H F +I ++ +V+W A+ +GY G E +L +M ++ ++P++
Sbjct: 157 SGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFKKM--VEMGVRPDSYF 214
Query: 201 LSGVLAACAQVKGVKLGKAI-----------HGYVLRHHIHLSTACGFVICSCSVFNQLS 249
+ VL+AC V + G+ I + +V ++L CG + + SVF+ +
Sbjct: 215 IVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMG 274
Query: 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-- 307
+D+V W+++I + + + ++ ++ N+KP+ +IV L +C L AL G
Sbjct: 275 EKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEW 334
Query: 308 ---------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
T F+ NALIDMY +CGA+ + ++F M K++V N IS
Sbjct: 335 GISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAIS 387
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 112/240 (46%), Gaps = 31/240 (12%)
Query: 139 FYAKCRY--LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP 196
F+ + Y L SH +F I +N ++ G+ E +L + ++
Sbjct: 57 FFRQTHYSFLLFSHTQFPNI-----FLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHG 111
Query: 197 NTISLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVF 245
T L VL AC + KLG +H V++ H + T+ G + + VF
Sbjct: 112 FTFPL--VLKACTRASNRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVF 169
Query: 246 NQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP 305
++ R VV W ++ S + +G+ +A+DL + ++ V+P++ IV VL AC+ + L
Sbjct: 170 EEIPERSVVTWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLD 229
Query: 306 QG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G + SFV L+++Y +CG ++K+R +F M K++V+W+ MI Y
Sbjct: 230 SGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYA 289
>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1182
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 156/321 (48%), Gaps = 27/321 (8%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
Y + I L+ D G P+ + + AC R G+ V+ + + + +GN V
Sbjct: 257 SYLDSIAVFRSLIRDSGYFPNRYSFVFAFGACGNGMCVREGEQVFTHAVKVGLDGNVFVV 316
Query: 104 RPLLDLFIKCGRMEITSGLFEE-MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L+ +F K GR+E +F+ +D+DF N++I Y + ++ F ++ ++D+V
Sbjct: 317 NALIGMFGKWGRVEDARNVFDSAVDRDFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVV 376
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW+ ++AGY G E + +M+Q++++PN ++ LAAC+ + + GK IH
Sbjct: 377 SWSTIIAGYVQVGCFMEALDFFH--KMLQSEVKPNEYTMVSALAACSNLVALDQGKWIHV 434
Query: 223 YVLRHHIHLS-----------TACGFVICSCSVFNQLST-RDVVVWNSIISAFVRSGQVV 270
Y+ R +I ++ CG + + SVF++ R V WN++I F G+
Sbjct: 435 YIRRDNIKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPE 494
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPAC------------LKLAALPQGLGTGSFVWNAL 318
+A+++ + V V PN VT +++L AC +L A G+ + +
Sbjct: 495 EAINVFEKMKVEKVSPNKVTFIALLNACSHGYMVKEGKSYFELMASDYGINPEIEHYGCM 554
Query: 319 IDMYGRCGAIQKSRKIFVLMP 339
+D+ R G ++ S ++ + MP
Sbjct: 555 VDLLSRSGHLKDSEEMILSMP 575
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 12/129 (9%)
Query: 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
G ++ + +F+++ RDVV W++II+ +V+ G ++ALD ++ + VKPN T+VS
Sbjct: 356 GSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVS 415
Query: 294 VLPACLKLAALPQGLGTGSFVWN-----------ALIDMYGRCGAIQKSRKIFVLMPHKN 342
L AC L AL QG ++ +LIDMY +CG I + +F K
Sbjct: 416 ALAACSNLVALDQGKWIHVYIRRDNIKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVKR 475
Query: 343 LV-SWNVMI 350
V WN MI
Sbjct: 476 KVWPWNAMI 484
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 89/188 (47%), Gaps = 31/188 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W++++ Y +G + E ++ F+ M+ V+P+ + ACS L GK ++ Y+
Sbjct: 377 SWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQGKWIHVYI 436
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ N + L+D++ KCG ++ S +F E
Sbjct: 437 RRDNIKMNDRLLASLIDMYAKCGEIDSASSVFHE-------------------------- 470
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
K+K+K + WNAM+ G+A+ G EE N+ ++M++ + PN ++ +L AC+
Sbjct: 471 --HKVKRK-VWPWNAMIGGFAMHGKPEEAINVFEKMKV--EKVSPNKVTFIALLNACSHG 525
Query: 212 KGVKLGKA 219
VK GK+
Sbjct: 526 YMVKEGKS 533
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 13/123 (10%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQ-VVDALDLLRDVIV-ANVKPNTVTIVSVLPAC--- 298
+F+Q+ D+ ++N++I + S +D++ + R +I + PN + V AC
Sbjct: 232 LFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFGACGNG 291
Query: 299 --------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ A+ GL FV NALI M+G+ G ++ +R +F ++ SWN MI
Sbjct: 292 MCVREGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDRDFYSWNTMI 351
Query: 351 SVY 353
Y
Sbjct: 352 GAY 354
>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 693
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/380 (22%), Positives = 180/380 (47%), Gaps = 61/380 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
++ +++ + G+ + + + M + G +P + +ACS+L D R GK ++ +
Sbjct: 122 SYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRHGKQIHGRI 181
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRME-------------------ITSG----------- 121
+ N V+ + D++ KCG ++ + SG
Sbjct: 182 VVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNECI 241
Query: 122 -LFEEMD-----QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGG 175
LF EM D + +++++ Y +C + + F K+ +KD + W M+ GYA G
Sbjct: 242 HLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLFIKLPKKDEICWTTMIVGYAQNG 301
Query: 176 FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHL 231
E+ L +M ++ +++P++ ++S ++++CA++ + G+ +HG V + + + +
Sbjct: 302 REEDAWMLFGDM--LRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSMLV 359
Query: 232 STACGFVICSCSV-------FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV 284
S+A + C C V F + R+V+ WN++I + ++GQV++AL L + N
Sbjct: 360 SSALVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEALTLYERMQQENF 419
Query: 285 KPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRK 333
KP+ +T V VL AC+ + +G + + +I + GR G++ K+
Sbjct: 420 KPDNITFVGVLSACINADMVKEGQKYFDSISEHGIAPTLDHYACMITLLGRSGSVDKAVD 479
Query: 334 IFVLMPHK-NLVSWNVMISV 352
+ MPH+ N W+ ++SV
Sbjct: 480 LIQGMPHEPNYRIWSTLLSV 499
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 119/285 (41%), Gaps = 64/285 (22%)
Query: 110 FIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLA 169
FI+ R++ L +D ++N L+ YAK L + F + ++D+ SWN +L+
Sbjct: 38 FIQAKRLQSHMELNLFQPKDSFIHNQLLHLYAKFGKLSDAQNVFDNMTKRDVYSWNTLLS 97
Query: 170 GYALGGFREEVTNLLDEM-----------------------------EMIQTDMQPNTIS 200
YA G E + + D+M M + QP S
Sbjct: 98 AYAKMGMVENLHVVFDQMPYRDSVSYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQYS 157
Query: 201 LSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLS 249
L AC+Q+ ++ GK IHG +V + CG + + +F+ +
Sbjct: 158 HVNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMI 217
Query: 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG 309
++VV WN +IS +V+ G + + L ++ ++ +KP+ VT+ +VL A
Sbjct: 218 DKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVLNA------------ 265
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
Y RCG + +R +F+ +P K+ + W MI Y
Sbjct: 266 ------------YFRCGRVDDARNLFIKLPKKDEICWTTMIVGYA 298
>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
Length = 660
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 95/391 (24%), Positives = 171/391 (43%), Gaps = 81/391 (20%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVN-------------- 51
Q+HA ++ G+ F S+++ FC+ + + +I N
Sbjct: 6 QIHAQMLRTGLFFDPFTASKIV-AFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCT 64
Query: 52 ---------LFYL-MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
LFY M+ +G+ PD + P ++K+C ++ GK ++ + + F
Sbjct: 65 DKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSC---RNSSEGKQIHCHSTKLGFAS--- 118
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
D N+L++ Y+ C L + F K++ K +
Sbjct: 119 ---------------------------DTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTV 151
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSW M+ +A E L D M M +++PN ++L VL ACA+ + + + K IH
Sbjct: 152 VSWATMIGVHAQWDQPNEAVRLFDRM-MKSENVKPNEVTLVNVLTACARARDLAMVKRIH 210
Query: 222 GYVLRH----HIHLSTACGFVICSC-------SVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y+ H H+ L+T V C C +F++ +++ WN +I+ V
Sbjct: 211 EYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYE 270
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNALI 319
+AL L R++ +K + VT+ S+L AC L AL G +++ AL+
Sbjct: 271 EALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALV 330
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
DMY +CG+I+ + ++F MP K++++W +I
Sbjct: 331 DMYAKCGSIETAIQVFHEMPEKDVMTWTALI 361
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/381 (22%), Positives = 162/381 (42%), Gaps = 77/381 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G Q+H H G + + L+ ++ N W +M+G++
Sbjct: 104 GKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQ 163
Query: 43 LGYYEEIVNLF-YLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
E V LF +M + V+P+ V AC+ +D + K +++Y+ F
Sbjct: 164 WDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGF----- 218
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
GR ++N L+D Y KC ++++ F K ++K+L
Sbjct: 219 ------------GR-------------HVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNL 253
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
SWN M+ G+ EE L EM+ ++ + ++++ +L AC + ++LGK +H
Sbjct: 254 FSWNIMINGHVEDSNYEEALLLFREMQT--KGIKGDKVTMASLLLACTHLGALELGKWLH 311
Query: 222 GYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y+ + I + A CG + + VF+++ +DV+ W ++I GQ
Sbjct: 312 AYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAE 371
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNAL 318
+AL ++ + VKP+ +T V VL AC + +G+ + + + L
Sbjct: 372 NALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGL 431
Query: 319 IDMYGRCGAIQKSRKIFVLMP 339
+D+ GR G I ++ ++ MP
Sbjct: 432 VDILGRAGRIAEAEELIKSMP 452
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 101/219 (46%), Gaps = 22/219 (10%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
FS+I + N+++ G +E LL EM+ + P+ + + +C
Sbjct: 45 FSQIPNPTSYTCNSIIRGCTDKNLHQEA--LLFYQEMMVQGLIPDRYTFPSLFKSCRNSS 102
Query: 213 --------GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
KLG A Y +++ + CG ++ + VF+++ + VV W ++I
Sbjct: 103 EGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHA 162
Query: 265 RSGQVVDALDLL-RDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGS 312
+ Q +A+ L R + NVKPN VT+V+VL AC + L G G
Sbjct: 163 QWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHV 222
Query: 313 FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ L+D+Y +CG +Q +R +F KNL SWN+MI+
Sbjct: 223 VLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMIN 261
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 115/272 (42%), Gaps = 64/272 (23%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W M+ + YEE + LF M KG++ D + AC+ L +GK ++ Y
Sbjct: 255 SWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAY- 313
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+K+ +D+ D + +L+D YAKC ++ +
Sbjct: 314 ----------IKKQRIDV-------------------DVALGTALVDMYAKCGSIETAIQ 344
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +KD+++W A++ G A+ G E DEM + ++P+ I+ GVLAAC+
Sbjct: 345 VFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHI--KGVKPDAITFVGVLAACSHA 402
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTR-----DVVVWNSIISAFVRS 266
GFV S FN +S + + ++ R+
Sbjct: 403 ------------------------GFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRA 438
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
G++ +A +L++ + +A P+ + +L AC
Sbjct: 439 GRIAEAEELIKSMPMA---PDQFVLGGLLGAC 467
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
VF+Q+ NSII +AL ++++V + P+ T S+ +C +
Sbjct: 44 VFSQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSSE 103
Query: 304 LPQ--------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
Q G + ++ N L++MY CG + +RK+F M K +VSW MI V+
Sbjct: 104 GKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHA 162
>gi|449458231|ref|XP_004146851.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Cucumis sativus]
gi|449522932|ref|XP_004168479.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Cucumis sativus]
Length = 705
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/352 (25%), Positives = 169/352 (48%), Gaps = 35/352 (9%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WTS++ + G+ EE + LF M KGV P + V C++L G+ ++ YM+
Sbjct: 243 WTSLLSSHARCGHLEETMVLFCKMRMKGVGPTAEMLAVVLSVCADLATLNSGQMIHGYMV 302
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHC 151
F K L+ L+ K G + LF EM LV+ N+LI +A+ +
Sbjct: 303 KGGFNDYLFAKNALITLYGKGGGVGDAEKLFHEMKVKNLVSWNALISSFAESGVYDKALE 362
Query: 152 KFSKIK--------QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSG 203
S+++ + ++++W+A++ G+A G EE + +M++ +++ N+++++
Sbjct: 363 LLSQLEKMEAYPEMKPNVITWSAIICGFASKGLGEESLEVFRKMQL--ANVKANSVTIAS 420
Query: 204 VLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRD 252
VL+ CA + + LG+ +HG+V+R I++ T CG VF +L RD
Sbjct: 421 VLSICAMLAALNLGREMHGHVIRARMDDNVLVGNGLINMYTKCGSFKPGFMVFEKLENRD 480
Query: 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS 312
+ WNS+I+ + G DAL +I + +P+ VT ++ L AC + +G S
Sbjct: 481 SISWNSMIAGYGTHGLGKDALATFNHMIKSGYRPDGVTFIAALSACSHAGLVAEGHWLFS 540
Query: 313 FV------------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMIS 351
+ + ++D+ GR G ++++ I MP N W+ +++
Sbjct: 541 QMRQNFKIEPEIEHYACMVDLLGRAGLVEEASNIIKGMPMEPNAYIWSSLLN 592
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 109/439 (24%), Positives = 195/439 (44%), Gaps = 92/439 (20%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCN------------------------WTSMMGMYN 41
QVH+ +V G AF+ ++L+ ++ W S++
Sbjct: 56 QVHSATVVTGAYCSAFVSARLVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSIIRANV 115
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
GY E + L+ M + GV D F P + +A S L + + K+++ +++ F+ +
Sbjct: 116 YHGYCIEALQLYGKMRNYGVLGDGFTFPLLLRASSNLGAFNMCKNLHCHVVQFGFQNHLH 175
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKIK--- 157
V L+ ++ K RM+ +F++M +V+ N+++ YA + + F +++
Sbjct: 176 VGNELIGMYAKLERMDDARKVFDKMRIKSVVSWNTMVSGYAYNYDVNGASRMFHQMELEG 235
Query: 158 -QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKL 216
+ + V+W ++L+ +A G EE L +M M + P L+ VL+ CA + +
Sbjct: 236 VEPNPVTWTSLLSSHARCGHLEETMVLFCKMRM--KGVGPTAEMLAVVLSVCADLATLNS 293
Query: 217 GKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVR 265
G+ IHGY+++ I L G V + +F+++ +++V WN++IS+F
Sbjct: 294 GQMIHGYMVKGGFNDYLFAKNALITLYGKGGGVGDAEKLFHEMKVKNLVSWNALISSFAE 353
Query: 266 SGQVVDALDLL---------------------------------------RDVIVANVKP 286
SG AL+LL R + +ANVK
Sbjct: 354 SGVYDKALELLSQLEKMEAYPEMKPNVITWSAIICGFASKGLGEESLEVFRKMQLANVKA 413
Query: 287 NTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIF 335
N+VTI SVL C LAAL G + V N LI+MY +CG+ + +F
Sbjct: 414 NSVTIASVLSICAMLAALNLGREMHGHVIRARMDDNVLVGNGLINMYTKCGSFKPGFMVF 473
Query: 336 VLMPHKNLVSWNVMISVYG 354
+ +++ +SWN MI+ YG
Sbjct: 474 EKLENRDSISWNSMIAGYG 492
>gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Glycine max]
Length = 855
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 101/400 (25%), Positives = 177/400 (44%), Gaps = 79/400 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++LG Q+H H+I G + + L+ ++ +W SM+
Sbjct: 274 IDLGRQLHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASDVFTMISTKDLISWASMITG 333
Query: 40 YNVLGYYEEIVNLFYLMIDKGV-RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
+ LGY E + LF M +G +P+ F+ V+ AC L + G+ ++
Sbjct: 334 FTQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLEPEFGRQIH---------- 383
Query: 99 NACVKRPL-LDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
C K L ++F C SL D YAK +L + F +I+
Sbjct: 384 GMCAKFGLGRNVFAGC---------------------SLCDMYAKFGFLPSAIRAFYQIE 422
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
DLVSWNA++A ++ G E +M+ T + P+ I+ +L AC + G
Sbjct: 423 SPDLVSWNAIIAAFSDSGDVNEAIYFF--CQMMHTGLMPDGITFLSLLCACGSPVTINQG 480
Query: 218 KAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTR-DVVVWNSIISAFVR 265
IH Y+++ + + T C + + +VF +S ++V WN+I+SA ++
Sbjct: 481 TQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAILSACLQ 540
Query: 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------V 314
Q + L + ++ + KP+ +TI ++L C +LA+L G F V
Sbjct: 541 HKQAGEVFRLFKLMLFSENKPDNITITTILGTCAELASLEVGNQVHCFSVKSGLVVDVSV 600
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
N LIDMY +CG+++ +R +F + ++VSW+ +I Y
Sbjct: 601 SNRLIDMYAKCGSLKHARDVFGSTQNPDIVSWSSLIVGYA 640
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 128/249 (51%), Gaps = 27/249 (10%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D ++ N +++ Y KC LK + F ++ +++VSW M++GY+ G +E ++ ++
Sbjct: 191 DLVLQNHILNMYGKCGSLKDARKAFDTMQLRNVVSWTIMISGYSQNG--QENDAIIMYIQ 248
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HH-------IHLSTACGF 237
M+Q+ P+ ++ ++ AC + LG+ +HG+V++ HH I + T G
Sbjct: 249 MLQSGYFPDPLTFGSIIKACCIAGDIDLGRQLHGHVIKSGYDHHLIAQNALISMYTRFGQ 308
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV-KPNTVTIVSVLP 296
++ + VF +ST+D++ W S+I+ F + G ++AL L RD+ +PN SV
Sbjct: 309 IVHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFS 368
Query: 297 ACLKLAALPQ------------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLV 344
AC L P+ GLG F +L DMY + G + + + F + +LV
Sbjct: 369 ACRSLLE-PEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFYQIESPDLV 427
Query: 345 SWNVMISVY 353
SWN +I+ +
Sbjct: 428 SWNAIIAAF 436
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 155/358 (43%), Gaps = 59/358 (16%)
Query: 20 AFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK 79
AF QL V +WT M+ Y+ G + + ++ M+ G PD + KAC
Sbjct: 214 AFDTMQLRNVV-SWTIMISGYSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAG 272
Query: 80 DYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDF 139
D +G+ ++ ++I + D + N+LI
Sbjct: 273 DIDLGRQLHGHVIKSGY------------------------------DHHLIAQNALISM 302
Query: 140 YAKCRYLKVSHCK--FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN 197
Y R+ ++ H F+ I KDL+SW +M+ G+ G+ E L +M Q QPN
Sbjct: 303 YT--RFGQIVHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDM-FRQGFYQPN 359
Query: 198 TISLSGVLAACAQVKGVKLGKAIHGYVLRHHI--HLSTAC---------GFVICSCSVFN 246
V +AC + + G+ IHG + + ++ C GF+ + F
Sbjct: 360 EFIFGSVFSACRSLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFY 419
Query: 247 QLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ 306
Q+ + D+V WN+II+AF SG V +A+ ++ + P+ +T +S+L AC + Q
Sbjct: 420 QIESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCACGSPVTINQ 479
Query: 307 GLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFV-LMPHKNLVSWNVMISV 352
G S+ V N+L+ MY +C + + +F + + NLVSWN ++S
Sbjct: 480 GTQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAILSA 537
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 75/339 (22%), Positives = 137/339 (40%), Gaps = 65/339 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
E G Q+H G+ F G L +++ +W +++ +
Sbjct: 377 EFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFYQIESPDLVSWNAIIAAF 436
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+ G E + F M+ G+ PD + AC G ++ Y+I I
Sbjct: 437 SDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCACGSPVTINQGTQIHSYIIKIG----- 491
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK- 159
+D++ V NSL+ Y KC L + F + +
Sbjct: 492 -------------------------LDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENA 526
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+LVSWNA+L+ EV L M + ++ +P+ I+++ +L CA++ +++G
Sbjct: 527 NLVSWNAILSACLQHKQAGEVFRLFKLM--LFSENKPDNITITTILGTCAELASLEVGNQ 584
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H + ++ I + CG + + VF D+V W+S+I + + G
Sbjct: 585 VHCFSVKSGLVVDVSVSNRLIDMYAKCGSLKHARDVFGSTQNPDIVSWSSLIVGYAQFGL 644
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
+AL+L R + V+PN VT + VL AC + + +G
Sbjct: 645 GHEALNLFRMMKNLGVQPNEVTYLGVLSACSHIGLVEEG 683
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 88/184 (47%), Gaps = 22/184 (11%)
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-----------HHIHLSTACGFVIC 240
+ +Q + + ++ AC ++ +K GK IH ++L+ H +++ CG +
Sbjct: 151 SSIQLESSTYGNLILACTSIRSLKYGKKIHDHILKSNCQPDLVLQNHILNMYGKCGSLKD 210
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-- 298
+ F+ + R+VV W +IS + ++GQ DA+ + ++ + P+ +T S++ AC
Sbjct: 211 ARKAFDTMQLRNVVSWTIMISGYSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCI 270
Query: 299 ---------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L + G NALI MY R G I + +F ++ K+L+SW M
Sbjct: 271 AGDIDLGRQLHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASDVFTMISTKDLISWASM 330
Query: 350 ISVY 353
I+ +
Sbjct: 331 ITGF 334
>gi|255551082|ref|XP_002516589.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544409|gb|EEF45930.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 367
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 149/290 (51%), Gaps = 32/290 (11%)
Query: 89 DYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKV 148
++ S+ + ++ + RP + + I + + D +V NS++D Y+KC +K
Sbjct: 10 EFTFSMNLKASSMLNRPYIGMQIHANCTKSGN------DIVIVVANSIVDMYSKCGRIKE 63
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
+ C F + ++L+SWN+M++GY++ GF E+ L EM++ +P+ +L+ L AC
Sbjct: 64 AACMFDFMPVRNLISWNSMISGYSIAGFGEKAVVLF--REMLEDGQEPDEFTLTSALKAC 121
Query: 209 AQVKGVKLGKAIHGYVL----RHHIHLSTA---------CGFVICSCSVFNQLSTRDVVV 255
+ + V+ G IH +++ + I S A CG + + VF+Q+ ++V+
Sbjct: 122 SDLAAVREGSQIHSFLIISGFPYLIKTSIAGALIDQYVKCGKLCEAQRVFSQIEEKNVIS 181
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------- 307
++++ + G + DA+ L R ++V+ + + S++ A + QG
Sbjct: 182 FSALFLGYAHGGNLADAMSLFRRFRESDVEADGFVLSSMIGVFADFALVEQGKQMHAYSI 241
Query: 308 ---LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G+ V N+++DMY +CG I ++ + F M ++++SW VMI+ YG
Sbjct: 242 KVPSGSDLSVCNSIVDMYLKCGVIDEAERFFAEMSTRDVISWTVMITGYG 291
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/343 (23%), Positives = 156/343 (45%), Gaps = 74/343 (21%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYN 41
+G+Q+HA+ G ++ + + +++++ +W SM+ Y+
Sbjct: 28 IGMQIHANCTKSGNDIVIVVANSIVDMYSKCGRIKEAACMFDFMPVRNLISWNSMISGYS 87
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG--N 99
+ G+ E+ V LF M++ G PD F KACS+L R G ++ ++I F
Sbjct: 88 IAGFGEKAVVLFREMLEDGQEPDEFTLTSALKACSDLAAVREGSQIHSFLIISGFPYLIK 147
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ L+D ++KCG++ C +V FS+I++K
Sbjct: 148 TSIAGALIDQYVKCGKL--------------------------CEAQRV----FSQIEEK 177
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMI----QTDMQPNTISLSGVLAACAQVKGVK 215
+++S++A+ GYA GG NL D M + ++D++ + LS ++ A V+
Sbjct: 178 NVISFSALFLGYAHGG------NLADAMSLFRRFRESDVEADGFVLSSMIGVFADFALVE 231
Query: 216 LGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
GK +H Y ++ + + CG + + F ++STRDV+ W +I+ +
Sbjct: 232 QGKQMHAYSIKVPSGSDLSVCNSIVDMYLKCGVIDEAERFFAEMSTRDVISWTVMITGYG 291
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
+ G +A+ L + +++P+ VT ++VL AC + +G
Sbjct: 292 KHGLGKEAVCLFNKMQSDDIEPDDVTYLAVLLACSHSGLVEEG 334
>gi|255575102|ref|XP_002528456.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532132|gb|EEF33939.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 664
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 88/346 (25%), Positives = 164/346 (47%), Gaps = 57/346 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W++++ Y E+ ++LF M + ++ ++ V AC++L R+GK V+ Y I
Sbjct: 283 WSAIIDALVQSRYAEDALSLFRDMQNDFLKANNVTLLSVLPACADLMSLRLGKSVHCYAI 342
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F D D L+ SL+ YAKC +
Sbjct: 343 KADF------------------------------DSDILIGTSLVSMYAKCGLFNSALTV 372
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ-TDMQPNTISLSGVLAACAQV 211
F+++ +D+V+ NA++ Y+ G + + ++ ++Q +++ P++ ++ +L+ C +
Sbjct: 373 FNRMPCEDIVTCNALINEYSQIG---DPYHAMEVFHVVQISEILPDSRTMVCLLSVCILL 429
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLS-TRDVVVWNSI 259
++ G IHG +++ I + CG + + +F + T+D V WN++
Sbjct: 430 HDLEQGSCIHGLIIKFGFDSHCNVKNSLIDMYAKCGSLANAEFLFKRTEFTKDEVSWNAL 489
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG---------- 309
I+ +V + +A L + + + +PN VT VSV PA +L+AL +G+
Sbjct: 490 IAGYVHNEHAKEAFSLFCQMKLEHFQPNLVTFVSVFPAVARLSALKEGMALHACIMRMGF 549
Query: 310 -TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ V N LIDMY +CG + S +F M +KN VSWNVM++ Y
Sbjct: 550 QSNVLVGNCLIDMYAKCGQLHNSEHLFHEMKNKNAVSWNVMLAGYA 595
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/346 (24%), Positives = 159/346 (45%), Gaps = 57/346 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +MM Y + E+++LF M R + A ++++D GK++ ++
Sbjct: 181 SWRTMMAGYAHNECFFEVLDLFDYMKKNNFRLNKVSVASALLAAADVRDSGRGKEICEFA 240
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ +D D + +++ YAKC L +
Sbjct: 241 RQ------------------------------QGIDSDVSITTAMMTMYAKCGNLDKAKQ 270
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNTISLSGVLAACAQ 210
F +K KDLV+W+A++ + E+ +L +M Q D ++ N ++L VL ACA
Sbjct: 271 LFQGLKVKDLVAWSAIIDALVQSRYAEDALSLFRDM---QNDFLKANNVTLLSVLPACAD 327
Query: 211 VKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ ++LGK++H Y ++ + + CG + +VFN++ D+V N++
Sbjct: 328 LMSLRLGKSVHCYAIKADFDSDILIGTSLVSMYAKCGLFNSALTVFNRMPCEDIVTCNAL 387
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LGT 310
I+ + + G A+++ V ++ + P++ T+V +L C+ L L QG G
Sbjct: 388 INEYSQIGDPYHAMEVFHVVQISEILPDSRTMVCLLSVCILLHDLEQGSCIHGLIIKFGF 447
Query: 311 GSF--VWNALIDMYGRCGAIQKSRKIFVLMPH-KNLVSWNVMISVY 353
S V N+LIDMY +CG++ + +F K+ VSWN +I+ Y
Sbjct: 448 DSHCNVKNSLIDMYAKCGSLANAEFLFKRTEFTKDEVSWNALIAGY 493
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 100/393 (25%), Positives = 167/393 (42%), Gaps = 77/393 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
GI +H ++ G+E F+G+ L+ ++ W +M+ +
Sbjct: 33 GILIHRGIVFKGLESDVFVGTALVNMYSKMGDPQLAKGVFDKMPKRDVVTWNAMIFGLSH 92
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+E + L M G PD + A S L D + ++ Y+I F A
Sbjct: 93 SVAPQEALKLVKSMQLAGQEPDFVTIVNLVPAVSRLADIDACRSLHGYVIRRGFP--AVF 150
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L+D++ KCG D Y C+ F ++ + +
Sbjct: 151 SNGLIDMYSKCG-----------------------DIYVACQV-------FELMQHTNDI 180
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW M+AGYA EV +L D M+ + + + N +S++ L A A V+ GK I
Sbjct: 181 SWRTMMAGYAHNECFFEVLDLFDYMK--KNNFRLNKVSVASALLAAADVRDSGRGKEICE 238
Query: 223 YVLRHHIH----LSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+ + I ++TA CG + + +F L +D+V W++II A V+S D
Sbjct: 239 FARQQGIDSDVSITTAMMTMYAKCGNLDKAKQLFQGLKVKDLVAWSAIIDALVQSRYAED 298
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALID 320
AL L RD+ +K N VT++SVLPAC L +L G + + +L+
Sbjct: 299 ALSLFRDMQNDFLKANNVTLLSVLPACADLMSLRLGKSVHCYAIKADFDSDILIGTSLVS 358
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
MY +CG + +F MP +++V+ N +I+ Y
Sbjct: 359 MYAKCGLFNSALTVFNRMPCEDIVTCNALINEY 391
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/321 (20%), Positives = 150/321 (46%), Gaps = 52/321 (16%)
Query: 52 LFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111
+++ +++KG+ PD V KAC+ +++ G ++ ++ E + V L++++
Sbjct: 1 MYHSILNKGLEPDKCTFTFVLKACTGGLEFKEGILIHRGIVFKGLESDVFVGTALVNMYS 60
Query: 112 KCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGY 171
K G ++ G+F++M ++D+V+WNAM+ G
Sbjct: 61 KMGDPQLAKGVFDKM------------------------------PKRDVVTWNAMIFGL 90
Query: 172 ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH--- 228
+ +E L+ M++ +P+ +++ ++ A +++ + +++HGYV+R
Sbjct: 91 SHSVAPQEALKLVKSMQL--AGQEPDFVTIVNLVPAVSRLADIDACRSLHGYVIRRGFPA 148
Query: 229 ------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
I + + CG + +C VF + + + W ++++ + + + LDL +
Sbjct: 149 VFSNGLIDMYSKCGDIYVACQVFELMQHTNDISWRTMMAGYAHNECFFEVLDLFDYMKKN 208
Query: 283 NVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKS 331
N + N V++ S L A + A QG+ + + A++ MY +CG + K+
Sbjct: 209 NFRLNKVSVASALLAAADVRDSGRGKEICEFARQQGIDSDVSITTAMMTMYAKCGNLDKA 268
Query: 332 RKIFVLMPHKNLVSWNVMISV 352
+++F + K+LV+W+ +I
Sbjct: 269 KQLFQGLKVKDLVAWSAIIDA 289
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 98/188 (52%), Gaps = 14/188 (7%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIK-QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
V NSLID YAKC L + F + + KD VSWNA++AGY +E +L +M++
Sbjct: 453 VKNSLIDMYAKCGSLANAEFLFKRTEFTKDEVSWNALIAGYVHNEHAKEAFSLFCQMKL- 511
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVI 239
QPN ++ V A A++ +K G A+H ++R I + CG +
Sbjct: 512 -EHFQPNLVTFVSVFPAVARLSALKEGMALHACIMRMGFQSNVLVGNCLIDMYAKCGQLH 570
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
S +F+++ ++ V WN +++ + GQ A++L + ++++ ++++ +SVL AC
Sbjct: 571 NSEHLFHEMKNKNAVSWNVMLAGYAVHGQGYHAIELFSLMQKSHIQADSLSFLSVLSACR 630
Query: 300 KLAALPQG 307
+ +G
Sbjct: 631 HSGLIDEG 638
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 91/186 (48%), Gaps = 20/186 (10%)
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTAC-------GF 237
++ ++P+ + + VL AC K G IH + L + + TA G
Sbjct: 5 ILNKGLEPDKCTFTFVLKACTGGLEFKEGILIHRGIVFKGLESDVFVGTALVNMYSKMGD 64
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ VF+++ RDVV WN++I S +AL L++ + +A +P+ VTIV+++PA
Sbjct: 65 PQLAKGVFDKMPKRDVVTWNAMIFGLSHSVAPQEALKLVKSMQLAGQEPDFVTIVNLVPA 124
Query: 298 CLKLAALPQGLGTGSFV---------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNV 348
+LA + +V N LIDMY +CG I + ++F LM H N +SW
Sbjct: 125 VSRLADIDACRSLHGYVIRRGFPAVFSNGLIDMYSKCGDIYVACQVFELMQHTNDISWRT 184
Query: 349 MISVYG 354
M++ Y
Sbjct: 185 MMAGYA 190
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 32/197 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ Y + +E +LF M + +P+ V+ A + L + G ++ +
Sbjct: 485 SWNALIAGYVHNEHAKEAFSLFCQMKLEHFQPNLVTFVSVFPAVARLSALKEGMALHACI 544
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + F+ N LV N LID YAKC L S
Sbjct: 545 MRMGFQSNV------------------------------LVGNCLIDMYAKCGQLHNSEH 574
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++K K+ VSWN MLAGYA+ G L M+ ++ +Q +++S VL+AC
Sbjct: 575 LFHEMKNKNAVSWNVMLAGYAVHGQGYHAIELFSLMQ--KSHIQADSLSFLSVLSACRHS 632
Query: 212 KGVKLGKAIHGYVLRHH 228
+ G+ I + + H
Sbjct: 633 GLIDEGRKIFDSMYKEH 649
>gi|326495056|dbj|BAJ85624.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 673
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 159/345 (46%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ G+ EE + LF M ++ V P + V AC+ L G+ V+ +
Sbjct: 190 SWTSMLSGCLQNGFAEEGLALFNEMREERVLPSEYTMASVLMACTMLGSLHQGRWVHGSV 249
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I N + +LD+++KCG +E LF+E+ F+
Sbjct: 250 IKHGMVFNPFITAAVLDMYVKCGEVEDARRLFDEL--GFV-------------------- 287
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
DLV W M+ GY G + L + + + + PN+++++ VL+A AQ+
Sbjct: 288 --------DLVLWTTMIVGYTQNGSPLDALLLFSDKKFVH--IVPNSVTIATVLSASAQL 337
Query: 212 KGVKLGKAIHGY-----------VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ + LG+ IH V+ + + C + + +F ++S +DVV WNS+I
Sbjct: 338 RNLSLGRLIHAMSVKLLVIENDVVMNALVDMYAKCKALSEANGIFGRISNKDVVTWNSLI 397
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLG 309
+ +V + +AL L + V P+ ++IV+ L AC+ L A+ +
Sbjct: 398 AGYVENDMGNEALMLFSQMRVQGSSPDAISIVNALSACVCLGDLLIGKCFHTYAVKRAFL 457
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ +V AL+++Y +C + ++++F M +N V+W MI YG
Sbjct: 458 SNVYVNTALLNLYNKCADLPSAQRVFSEMSERNSVTWGAMIGGYG 502
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 131/247 (53%), Gaps = 24/247 (9%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D V N L+D YAK L+ + F +I +++VSW +ML+G GF EE L +EM
Sbjct: 156 DGFVMNCLVDMYAKAGDLENARKVFDRILGRNVVSWTSMLSGCLQNGFAEEGLALFNEMR 215
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGF 237
+ + P+ +++ VL AC + + G+ +HG V++H + + CG
Sbjct: 216 --EERVLPSEYTMASVLMACTMLGSLHQGRWVHGSVIKHGMVFNPFITAAVLDMYVKCGE 273
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
V + +F++L D+V+W ++I + ++G +DAL L D ++ PN+VTI +VL A
Sbjct: 274 VEDARRLFDELGFVDLVLWTTMIVGYTQNGSPLDALLLFSDKKFVHIVPNSVTIATVLSA 333
Query: 298 CLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
+L L G + V NAL+DMY +C A+ ++ IF + +K++V+W
Sbjct: 334 SAQLRNLSLGRLIHAMSVKLLVIENDVVMNALVDMYAKCKALSEANGIFGRISNKDVVTW 393
Query: 347 NVMISVY 353
N +I+ Y
Sbjct: 394 NSLIAGY 400
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 99/182 (54%), Gaps = 13/182 (7%)
Query: 128 QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
++ +V N+L+D YAKC+ L ++ F +I KD+V+WN+++AGY E L +M
Sbjct: 357 ENDVVMNALVDMYAKCKALSEANGIFGRISNKDVVTWNSLIAGYVENDMGNEALMLFSQM 416
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH----HIHLSTA-------CG 236
+ + P+ IS+ L+AC + + +GK H Y ++ +++++TA C
Sbjct: 417 RVQGS--SPDAISIVNALSACVCLGDLLIGKCFHTYAVKRAFLSNVYVNTALLNLYNKCA 474
Query: 237 FVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296
+ + VF+++S R+ V W ++I + G ++DLL ++ N++PN V S+L
Sbjct: 475 DLPSAQRVFSEMSERNSVTWGAMIGGYGMQGDSAGSIDLLNKMLKDNIQPNEVVFTSILS 534
Query: 297 AC 298
C
Sbjct: 535 TC 536
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 26/174 (14%)
Query: 201 LSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSC-----------SVFNQLS 249
L +L ACA + ++ A+H +L H + + + SC V ++
Sbjct: 26 LHRLLPACATLPSLR---ALHARLLAHGLLRALRARTKLLSCYAALGDLASARRVLDETP 82
Query: 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVI--VANVKPNTVTIVSVLPACLKLAALPQG 307
D + + +G+ DAL L R + + V + L A ++ A G
Sbjct: 83 RPDPYTYRVALGWHAAAGRHADALALHRGMRRRCPEAHDDVVLLSLALKASVRSADFRYG 142
Query: 308 L----------GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
G FV N L+DMY + G ++ +RK+F + +N+VSW M+S
Sbjct: 143 RRLHCNAVKAGGADGFVMNCLVDMYAKAGDLENARKVFDRILGRNVVSWTSMLS 196
>gi|302788326|ref|XP_002975932.1| hypothetical protein SELMODRAFT_51678 [Selaginella moellendorffii]
gi|300156208|gb|EFJ22837.1| hypothetical protein SELMODRAFT_51678 [Selaginella moellendorffii]
Length = 570
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 100/343 (29%), Positives = 156/343 (45%), Gaps = 60/343 (17%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W ++G Y G EE + LF M +G RPD +V AC+ G ++ ++
Sbjct: 25 WNFVIGAYAGNGRGEESLYLFRRMALEGERPDRHTFVRVLGACTNTAQ---GTAIHRHIS 81
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
S SGL + D ++ NSL+ Y + + ++
Sbjct: 82 S--------------------------SGL----EFDLMLQNSLVALYGRYGRVDLARSV 111
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTIS-LSGVLAACAQV 211
F I +K LVSWNAML YA G E + + EMI T ++PN IS L+ VL AC+
Sbjct: 112 FQSIPEKSLVSWNAMLTAYARNGHSREAAHAYN--EMIFTGIEPNEISTLTTVLGACSSS 169
Query: 212 KGVKLGKAIH------GYVLRHH------IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ +K+GK IH G+ ++ CG V + VF+ ++ + VVV ++
Sbjct: 170 RDLKIGKMIHSRAVCCGFDKEDQVLQVAVVNFYGKCGAVADARRVFDGIAQKSVVVHTAM 229
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA---ALPQGL------GT 310
I + + G ++AL++ + NV PN VT +VL AC L A+ Q + T
Sbjct: 230 IGGYAQHGHSLEALEIYHAM---NVPPNRVTYSTVLAACSTLEQGKAIHQRILASKLENT 286
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G + AL+ MY +R +F M ++LV+WN M+ Y
Sbjct: 287 GLVLETALVKMYASFDDCASARGVFDRMERRDLVAWNTMLGGY 329
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 96/378 (25%), Positives = 171/378 (45%), Gaps = 86/378 (22%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYNV 42
G +H H+ G+E L + L+ ++ +W +M+ Y
Sbjct: 73 GTAIHRHISSSGLEFDLMLQNSLVALYGRYGRVDLARSVFQSIPEKSLVSWNAMLTAYAR 132
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHF-VCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G+ E + + MI G+ P+ V ACS +D ++GK ++ + C
Sbjct: 133 NGHSREAAHAYNEMIFTGIEPNEISTLTTVLGACSSSRDLKIGKMIHSRAV--------C 184
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
CG F++ DQ V ++++FY KC + + F I QK +
Sbjct: 185 -----------CG--------FDKEDQVLQV--AVVNFYGKCGAVADARRVFDGIAQKSV 223
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
V AM+ GYA G E + M ++ PN ++ S VLAAC+ ++ GKAIH
Sbjct: 224 VVHTAMIGGYAQHGHSLEALEIYHAM-----NVPPNRVTYSTVLAACST---LEQGKAIH 275
Query: 222 GYVLRHHIH-----LSTA-----CGFVICSCS--VFNQLSTRDVVVWNSIISAFVRSGQV 269
+L + L TA F C+ + VF+++ RD+V WN+++ +V+SG+
Sbjct: 276 QRILASKLENTGLVLETALVKMYASFDDCASARGVFDRMERRDLVAWNTMLGGYVQSGRG 335
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNA 317
+AL+L D+ + P++ T+ ++L AC L L G + +F+ ++
Sbjct: 336 KEALELYEDM---KMDPDSTTLSTLLGACSLLGDLSSGKIFHELLIERKMMQADAFLCSS 392
Query: 318 LIDMYGRCGAIQKSRKIF 335
L++MY +CG++ +R++F
Sbjct: 393 LVNMYAKCGSVGTAREVF 410
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 79/349 (22%), Positives = 146/349 (41%), Gaps = 76/349 (21%)
Query: 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS 93
T+M+G Y G+ E + +++ M V P+ V ACS L+ GK ++ +++
Sbjct: 227 TAMIGGYAQHGHSLEALEIYHAM---NVPPNRVTYSTVLAACSTLEQ---GKAIHQRILA 280
Query: 94 IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKF 153
K E V + +L+ YA + F
Sbjct: 281 SKLENTGLV-----------------------------LETALVKMYASFDDCASARGVF 311
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG 213
+++++DLV+WN ML GY G +E L ++M+ M P++ +LS +L AC+ +
Sbjct: 312 DRMERRDLVAWNTMLGGYVQSGRGKEALELYEDMK-----MDPDSTTLSTLLGACSLLGD 366
Query: 214 VKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLST---RDVVVWNS 258
+ GK H ++ +++ CG V + VF+ V+WN+
Sbjct: 367 LSSGKIFHELLIERKMMQADAFLCSSLVNMYAKCGSVGTAREVFHAFRAGFGASSVLWNT 426
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNAL 318
I++A +G +L+LL ++ + V P++ T V L AC L + G ++ L
Sbjct: 427 ILAALAHTGDSSQSLELLLEMELEGVTPDSTTFVCALVACNHAGLLQR----GKLLFQIL 482
Query: 319 I----------------DMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ D+ GR G + +R++ MP + V+W ++
Sbjct: 483 VLDHSSRPSLEHFLCMADLLGRAGRVDFAREVVEGMPFEADAVAWKALL 531
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 107/235 (45%), Gaps = 23/235 (9%)
Query: 140 YAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI 199
Y KC + + F + +K + WN ++ YA G EE L M + +P+
Sbjct: 1 YGKCGSVDRARSLFESLPRKSSLCWNFVIGAYAGNGRGEESLYLFRRMAL--EGERPDRH 58
Query: 200 SLSGVLAACAQV-KGVKLGKAIHGYVLRHHIHLSTAC-------GFVICSCSVFNQLSTR 251
+ VL AC +G + + I L + L + G V + SVF + +
Sbjct: 59 TFVRVLGACTNTAQGTAIHRHISSSGLEFDLMLQNSLVALYGRYGRVDLARSVFQSIPEK 118
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV-TIVSVLPAC-----LKLAALP 305
+V WN++++A+ R+G +A ++I ++PN + T+ +VL AC LK+ +
Sbjct: 119 SLVSWNAMLTAYARNGHSREAAHAYNEMIFTGIEPNEISTLTTVLGACSSSRDLKIGKMI 178
Query: 306 Q------GLGTGSFVWN-ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G V A+++ YG+CGA+ +R++F + K++V MI Y
Sbjct: 179 HSRAVCCGFDKEDQVLQVAVVNFYGKCGAVADARRVFDGIAQKSVVVHTAMIGGY 233
>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 568
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 97/395 (24%), Positives = 183/395 (46%), Gaps = 51/395 (12%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNVLG 44
++HAH++ + FL +++L+ N + +++ Y
Sbjct: 28 KIHAHVVKLSLSQSNFLVTKMLDSCDNLGHVSYATLLFKQLLHPNIFTYNAIIRTYAHNR 87
Query: 45 YYEEIVNLFYLMID---KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
++ +++F M+ V PD F P V K+C+ + +R+G V+ + + +
Sbjct: 88 HHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRLGMQVHGLVYKFGADFHCI 147
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
+ L+D++ K G + +FEEM +D + NSLI Y K + + F + +
Sbjct: 148 TENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFDDMPVRT 207
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+VSW M+ GY G + ++ EM+M+ ++P+ IS+ VL ACAQ+ +++GK I
Sbjct: 208 IVSWTTMITGYGRMGCYGDALDVFREMQMV--GIEPDEISIIAVLPACAQLGALEVGKWI 265
Query: 221 HGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
H Y ++ I + CG + + ++F+QL +DV+ W+++I G+
Sbjct: 266 HMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLANHGKG 325
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-----TGSF-------VWNA 317
+A+ L ++ V PN +T + VL AC +GL + S+ +
Sbjct: 326 YEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWDEGLKYFDVMSASYHIEPEIEHYGC 385
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMIS 351
LID+ GR G + ++ MP K + WN ++S
Sbjct: 386 LIDLLGRSGCLGQALDTISKMPIKPDSRIWNSLLS 420
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV---ANVKPNTVTIV 292
G V + +F QL ++ +N+II + + A+ + ++ +V P+ T
Sbjct: 56 GHVSYATLLFKQLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFP 115
Query: 293 SVLPACLKLAALPQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIFVLMPHK 341
V+ +C + G+ V+ NALIDMY + G + + K+F M H+
Sbjct: 116 FVIKSCTGILCHRLGMQVHGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSHR 175
Query: 342 NLVSWNVMISVY 353
+++SWN +I Y
Sbjct: 176 DVISWNSLIFGY 187
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/203 (18%), Positives = 78/203 (38%), Gaps = 49/203 (24%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNTISLSGVLAACAQV 211
F ++ ++ ++NA++ YA ++ +M T+ + P+ + V+ +C +
Sbjct: 65 FKQLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGI 124
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
+LG +HG V + + N++I + + G + +
Sbjct: 125 LCHRLGMQVHGLVYKFGADFH--------------------CITENALIDMYTKFGDLTN 164
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKS 331
A + ++ +V WN+LI Y + G + +
Sbjct: 165 ACKVFEEMSHRDV----------------------------ISWNSLIFGYVKLGQMNSA 196
Query: 332 RKIFVLMPHKNLVSWNVMISVYG 354
R++F MP + +VSW MI+ YG
Sbjct: 197 RELFDDMPVRTIVSWTTMITGYG 219
>gi|357441857|ref|XP_003591206.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480254|gb|AES61457.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 490
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/355 (25%), Positives = 175/355 (49%), Gaps = 45/355 (12%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+ S++ ++ + + + F LM + + PD+F P + KA S L+DY +G+ ++ ++
Sbjct: 75 FNSIIKAHSSFPPFHQSFHFFNLMKMTHNILPDNFTFPPLLKATSYLRDYDLGQCLHAHV 134
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSH 150
++ F ++ V+ LL+++ CG+ME + +F+EM ++ +V N +I+ + K L++
Sbjct: 135 TALGFYRHSPVEIGLLEVYSNCGKMEDANKVFDEMLHREVVVWNIMINGFCKMGDLEIGL 194
Query: 151 CKFSKIKQKDLVSWNAMLA--------GYALGGFREEVTNLLDEMEMIQTDMQPNTISLS 202
F ++ Q+ +VSWN M++ G A G FR EM++ +P+ +L
Sbjct: 195 KLFKRMGQRSVVSWNLMISCLAQRKKDGEAFGIFR----------EMLEQGFEPDDATLV 244
Query: 203 GVLAACAQVKGVKLGKAIHGY-----VLRHHIHLSTA-------CGFVICSCSVFNQLST 250
VL CA++ V G+ IH Y +LR I + + CG + + VFN+++
Sbjct: 245 TVLPVCARLGDVDAGEWIHSYADGKGLLRKVISVGNSLVDFYCKCGNLEAAWKVFNEMTK 304
Query: 251 RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG--- 307
++VV WN++IS +G+ ++L + V P+ T V VL C + +G
Sbjct: 305 KNVVSWNAMISGLGLNGKGELGVELFEKMARKGVTPSDSTFVGVLACCAHAGFVDKGREI 364
Query: 308 ---------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
L + ++D+ GRCG ++++ + MP N W ++S
Sbjct: 365 FDSMTVKFKLSPKLEHYGCVVDLLGRCGHVKEAYDLIRNMPLMPNAALWGALLSA 419
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 116/256 (45%), Gaps = 55/256 (21%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+ +++ +N+++ ++ + + + M+M ++ P+ + +L A + ++
Sbjct: 64 FNHTHHPNILLFNSIIKAHSSFPPFHQSFHFFNLMKMTH-NILPDNFTFPPLLKATSYLR 122
Query: 213 GVKLGKAIHGYVL-----RHH------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
LG+ +H +V RH + + + CG + + VF+++ R+VVVWN +I+
Sbjct: 123 DYDLGQCLHAHVTALGFYRHSPVEIGLLEVYSNCGKMEDANKVFDEMLHREVVVWNIMIN 182
Query: 262 AFVRSGQVV-------------------------------DALDLLRDVIVANVKPNTVT 290
F + G + +A + R+++ +P+ T
Sbjct: 183 GFCKMGDLEIGLKLFKRMGQRSVVSWNLMISCLAQRKKDGEAFGIFREMLEQGFEPDDAT 242
Query: 291 IVSVLPACLKLAALPQGLGTGSF------------VWNALIDMYGRCGAIQKSRKIFVLM 338
+V+VLP C +L + G S+ V N+L+D Y +CG ++ + K+F M
Sbjct: 243 LVTVLPVCARLGDVDAGEWIHSYADGKGLLRKVISVGNSLVDFYCKCGNLEAAWKVFNEM 302
Query: 339 PHKNLVSWNVMISVYG 354
KN+VSWN MIS G
Sbjct: 303 TKKNVVSWNAMISGLG 318
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 108/251 (43%), Gaps = 53/251 (21%)
Query: 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL 107
E +F M+++G PD V C+ L D G+ ++ Y +G +++ +
Sbjct: 223 EAFGIFREMLEQGFEPDDATLVTVLPVCARLGDVDAGEWIHSYA-----DGKGLLRKVIS 277
Query: 108 DLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAM 167
V NSL+DFY KC L+ + F+++ +K++VSWNAM
Sbjct: 278 ------------------------VGNSLVDFYCKCGNLEAAWKVFNEMTKKNVVSWNAM 313
Query: 168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH 227
++G L G E L + +M + + P+ + GVLA CA V G+ I
Sbjct: 314 ISGLGLNGKGELGVELFE--KMARKGVTPSDSTFVGVLACCAHAGFVDKGREI------- 364
Query: 228 HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
S +V +LS + + + ++ R G V +A DL+R++ + PN
Sbjct: 365 -----------FDSMTVKFKLSPK-LEHYGCVVDLLGRCGHVKEAYDLIRNMPLM---PN 409
Query: 288 TVTIVSVLPAC 298
++L AC
Sbjct: 410 AALWGALLSAC 420
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 27/159 (16%)
Query: 220 IHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSII---SAFVR 265
IH + LRH +H S T+ + + ++FN +++++NSII S+F
Sbjct: 28 IHAHFLRHGLHHSNQILSHFVSVCTSLHQIPYATTIFNHTHHPNILLFNSIIKAHSSFPP 87
Query: 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPA-----------CLKLAALPQGLGTGSFV 314
Q +L++ + N+ P+ T +L A CL G S V
Sbjct: 88 FHQSFHFFNLMK--MTHNILPDNFTFPPLLKATSYLRDYDLGQCLHAHVTALGFYRHSPV 145
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L+++Y CG ++ + K+F M H+ +V WN+MI+ +
Sbjct: 146 EIGLLEVYSNCGKMEDANKVFDEMLHREVVVWNIMINGF 184
>gi|225457861|ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g77010, mitochondrial-like [Vitis vinifera]
Length = 685
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 155/333 (46%), Gaps = 26/333 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W SM+ Y E + LF M KGV+ D+ V ACS L G V+ ++
Sbjct: 273 WNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVY 332
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSHC 151
+ F + + L+D++ KC R + LF ++ D ++ NS+I Y+ C + +
Sbjct: 333 KVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQ 392
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + K L+SWN+M+ G++ E +L EM + M + SL+GV++ACA +
Sbjct: 393 IFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRM--DKFSLAGVISACASI 450
Query: 212 KGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
++LG+ I L +ST+ CG V +F+++ D V WNS++
Sbjct: 451 SSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSML 510
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------L 308
+ +G ++AL++ + V+P +T V VL AC + +G +
Sbjct: 511 MGYATNGHGIEALNVFDQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKWFYAMKLDYHI 570
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK 341
G ++ ++D+Y R G ++ + + MP K
Sbjct: 571 NPGIEHYSCMVDLYARAGLLEDAMNLIEQMPLK 603
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 85/382 (22%), Positives = 161/382 (42%), Gaps = 65/382 (17%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRP------DHFVCPKVYKACSELKDYRVGKD 86
W SM+ Y G +E V LF D + P D FV V AC+ L GK
Sbjct: 138 WNSMIHGYACNGRPKEAVGLFK---DLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQ 194
Query: 87 VYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRY 145
++ ++ + E ++ + L++L+ KCG ++ + + M + D ++LI YA C
Sbjct: 195 IHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYASCGR 254
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
+ + F +V WN+M++GY E L + M + +Q + + + VL
Sbjct: 255 MNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMR--RKGVQEDYSTFASVL 312
Query: 206 AACAQVKGVKLGKAIHGYV----------------------------------------- 224
+AC+ + + G +H +V
Sbjct: 313 SACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTI 372
Query: 225 -LRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283
L I + + CG + + +F+ + ++ ++ WNS+I F ++ ++ALDL ++
Sbjct: 373 LLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLG 432
Query: 284 VKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSR 332
++ + ++ V+ AC +++L GL + +L+D Y +CG ++ R
Sbjct: 433 LRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVEHGR 492
Query: 333 KIFVLMPHKNLVSWNVMISVYG 354
K+F M + V WN M+ Y
Sbjct: 493 KLFDRMMKSDEVPWNSMLMGYA 514
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/362 (22%), Positives = 139/362 (38%), Gaps = 117/362 (32%)
Query: 106 LLDLFIKCGRMEITSGLFEEMD--------------------------------QDFLVN 133
LL ++ +C M LFEEM +D
Sbjct: 48 LLQMYSRCNSMREAQQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSW 107
Query: 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193
N +I +AK L+V+ F+++ K+ ++WN+M+ GYA G +E L ++ + +
Sbjct: 108 NVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLE 167
Query: 194 -MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-----------ACGFVICS 241
+T L+ V+ AC + + GK IH ++ + + CG + +
Sbjct: 168 RFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSA 227
Query: 242 CSVFNQLSTRD-------------------------------VVVWNSIISAFVRSGQVV 270
V N + D VV+WNS+IS +V + + +
Sbjct: 228 NHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEAL 287
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW-----------NALI 319
+AL+L ++ V+ + T SVL AC L + QG+ + V+ +AL+
Sbjct: 288 EALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALV 347
Query: 320 DMYGR-------------------------------CGAIQKSRKIFVLMPHKNLVSWNV 348
DMY + CG I +R+IF MP K+L+SWN
Sbjct: 348 DMYSKCRRPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNS 407
Query: 349 MI 350
MI
Sbjct: 408 MI 409
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 112/268 (41%), Gaps = 54/268 (20%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ ++ E ++LF M G+R D F V AC+ + +G+ ++
Sbjct: 404 SWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARA 463
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I E DQ +++ SL+DFY KC ++
Sbjct: 464 TIIGLE----------------------------FDQ--IISTSLVDFYCKCGLVEHGRK 493
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ + D V WN+ML GYA G E N+ D+M + +QP I+ GVL+AC
Sbjct: 494 LFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSV--GVQPTDITFVGVLSACDHC 551
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V+ G+ Y ++ H++ C ++ + R+G + D
Sbjct: 552 GLVEEGRKWF-YAMKLDYHINPGIEHYSC------------------MVDLYARAGLLED 592
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACL 299
A++L+ + +K +T SVL C+
Sbjct: 593 AMNLIEQM---PLKADTSMWSSVLRGCV 617
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 313 FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
F WN +I+ Y + G+ KS ++F MPHK+ SWNV+IS +
Sbjct: 74 FSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFA 115
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ N L+ MY RC ++++++++F MP +N SWN MI Y
Sbjct: 44 IGNRLLQMYSRCNSMREAQQLFEEMPKRNCFSWNTMIEGY 83
>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 648
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 151/336 (44%), Gaps = 65/336 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMG--------------MYNVL------ 43
G Q+HA + + G + ++L+ ++C S+ ++NVL
Sbjct: 94 GKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAW 153
Query: 44 -GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G YE V L+Y M D G+ PD+F P V KAC+ L G++++++++ +E
Sbjct: 154 NGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWE----- 208
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+D V +LID YAKC + + F KI +D V
Sbjct: 209 -------------------------KDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAV 243
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
WN+MLA Y+ G + +L EM+ T ++P +L ++A A + G+ +HG
Sbjct: 244 LWNSMLAAYSQNGHPDACLSLCS--EMVLTGLRPTEATLVTAISASADNAALPQGRELHG 301
Query: 223 YVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
R H + TA CG V + ++F +L + VV WN++I+ + G +
Sbjct: 302 LSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATE 361
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307
ALDL ++ KP+ +T V VL AC L +G
Sbjct: 362 ALDLFEEMNRV-AKPDHITFVGVLSACSHGGLLEEG 396
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 123/248 (49%), Gaps = 24/248 (9%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D ++ L++ Y C L + F +I + ++ WN ++ GYA G E L +
Sbjct: 109 DTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLY--YQ 166
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGF 237
M + P+ + VL ACA + ++ G+ IH +V++ I + CG
Sbjct: 167 MFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGC 226
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
V + VF+++ RD V+WNS+++A+ ++G L L ++++ ++P T+V+ + A
Sbjct: 227 VGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISA 286
Query: 298 CLKLAALPQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
AALPQG W AL+DMY +CG+++ +R +F + K +VSW
Sbjct: 287 SADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSW 346
Query: 347 NVMISVYG 354
N MI+ Y
Sbjct: 347 NAMITGYA 354
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 100/231 (43%), Gaps = 54/231 (23%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+E G ++H H++ G E F+G+ L++++ W SM+
Sbjct: 192 IEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAA 251
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y+ G+ + ++L M+ G+RP A ++ G++++ +FE +
Sbjct: 252 YSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESH 311
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
VK L+D++ KCG + + LFE ++ K
Sbjct: 312 DKVKTALVDMYAKCGSVRVARNLFE------------------------------RLGVK 341
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+VSWNAM+ GYA+ G E +L +EM + +P+ I+ GVL+AC+
Sbjct: 342 RVVSWNAMITGYAMHGHATEALDLFEEMNRV---AKPDHITFVGVLSACSH 389
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.327 0.140 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,396,141,298
Number of Sequences: 23463169
Number of extensions: 214640778
Number of successful extensions: 723056
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5944
Number of HSP's successfully gapped in prelim test: 2500
Number of HSP's that attempted gapping in prelim test: 593971
Number of HSP's gapped (non-prelim): 54400
length of query: 354
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 211
effective length of database: 9,003,962,200
effective search space: 1899836024200
effective search space used: 1899836024200
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 77 (34.3 bits)