BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038758
(354 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 176 bits (447), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 188/343 (54%), Gaps = 27/343 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M + + + L+ MI G+ P+ + P V K+C++ K ++ G+ ++ +++
Sbjct: 102 WNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVL 161
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHC 151
+ + + V L+ ++++ GR+E +F++ +D + +LI YA Y++ +
Sbjct: 162 KLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQK 221
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I KD+VSWNAM++GYA G +E L +M ++T+++P+ ++ V++ACAQ
Sbjct: 222 LFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDM--MKTNVRPDESTMVTVVSACAQS 279
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++LG+ +H ++ H I L + CG + +C +F +L +DV+ WN++I
Sbjct: 280 GSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLI 339
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-------------QG 307
+ +AL L ++++ + PN VT++S+LPAC L A+ +G
Sbjct: 340 GGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKG 399
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ S + +LIDMY +CG I+ + ++F + HK+L SWN MI
Sbjct: 400 VTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMI 442
Score = 118 bits (296), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 127/254 (50%), Gaps = 55/254 (21%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I++ +L+ WN M G+AL + V+ L + MI + PN+ + VL +CA+ K
Sbjct: 91 FKTIQEPNLLIWNTMFRGHALSS--DPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSK 148
Query: 213 GVKLGKAIHGYVLRH------HIHLS---------------------------------- 232
K G+ IHG+VL+ ++H S
Sbjct: 149 AFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIK 208
Query: 233 --TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
+ G++ + +F+++ +DVV WN++IS + +G +AL+L +D++ NV+P+ T
Sbjct: 209 GYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDEST 268
Query: 291 IVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+V+V+ AC + ++ G G+ + NALID+Y +CG ++ + +F +P
Sbjct: 269 MVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLP 328
Query: 340 HKNLVSWNVMISVY 353
+K+++SWN +I Y
Sbjct: 329 YKDVISWNTLIGGY 342
Score = 111 bits (277), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 125/280 (44%), Gaps = 45/280 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G Y+E + LF M+ VRPD V AC++ +G+ V+ ++
Sbjct: 233 SWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWI 292
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
F N + N+LID Y+KC L+ +
Sbjct: 293 DDHGFGSN------------------------------LKIVNALIDLYSKCGELETACG 322
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ KD++SWN ++ GY +E LL EM+++ PN +++ +L ACA +
Sbjct: 323 LFERLPYKDVISWNTLIGGYTHMNLYKEA--LLLFQEMLRSGETPNDVTMLSILPACAHL 380
Query: 212 KGVKLGKAIHGYV------------LRHH-IHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ +G+ IH Y+ LR I + CG + + VFN + + + WN+
Sbjct: 381 GAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNA 440
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+I F G+ + DL + ++P+ +T V +L AC
Sbjct: 441 MIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSAC 480
Score = 78.2 bits (191), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 34/191 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++G Y + Y+E + LF M+ G P+ + AC+ L +G+ ++ Y
Sbjct: 334 SWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVY- 392
Query: 92 ISIKFEG--NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
I + +G NA R SLID YAKC ++ +
Sbjct: 393 IDKRLKGVTNASSLR-----------------------------TSLIDMYAKCGDIEAA 423
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
H F+ I K L SWNAM+ G+A+ G + +L M I +QP+ I+ G+L+AC+
Sbjct: 424 HQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKI--GIQPDDITFVGLLSACS 481
Query: 210 QVKGVKLGKAI 220
+ LG+ I
Sbjct: 482 HSGMLDLGRHI 492
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 11/123 (8%)
Query: 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302
SVF + ++++WN++ S V AL L +I + PN+ T VL +C K
Sbjct: 89 SVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSK 148
Query: 303 ALPQG-------LGTGS----FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
A +G L G +V +LI MY + G ++ + K+F PH+++VS+ +I
Sbjct: 149 AFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIK 208
Query: 352 VYG 354
Y
Sbjct: 209 GYA 211
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 162 bits (411), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 109/352 (30%), Positives = 179/352 (50%), Gaps = 42/352 (11%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ + + + + F M G PDH V P V K+C+ + D R G+ V+ +++
Sbjct: 73 WKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIV 132
Query: 93 SIKFEGNACVKRPLLDLFIKCGRM--EITSG-LFEEM--------DQDFLVNNSLIDF-Y 140
+ + + L++++ K M +I+ G +F+EM D+D ++ F
Sbjct: 133 RLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGI 192
Query: 141 AKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTIS 200
R + F + +KD+VS+N ++AGYA G E+ ++ EM TD++P++ +
Sbjct: 193 DSVRRV------FEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGT--TDLKPDSFT 244
Query: 201 LSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVIC-----------SCSVFNQLS 249
LS VL ++ V GK IHGYV+R I G + S VF++L
Sbjct: 245 LSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLY 304
Query: 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA------ 303
RD + WNS+++ +V++G+ +AL L R ++ A VKP V SV+PAC LA
Sbjct: 305 CRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQ 364
Query: 304 -----LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
L G G+ F+ +AL+DMY +CG I+ +RKIF M + VSW +I
Sbjct: 365 LHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAII 416
Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 142/303 (46%), Gaps = 47/303 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
++ +++ Y G YE+ + + M ++PD F V SE D GK+++ Y+
Sbjct: 209 SYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYV 268
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I + +D D + +SL+D YAK ++ S
Sbjct: 269 IR------------------------------KGIDSDVYIGSSLVDMYAKSARIEDSER 298
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS++ +D +SWN+++AGY G E L +M+ ++P ++ S V+ ACA +
Sbjct: 299 VFSRLYCRDGISWNSLVAGYVQNGRYNEALRLF--RQMVTAKVKPGAVAFSSVIPACAHL 356
Query: 212 KGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ LGK +HGYVLR +I +++A CG + + +F++++ D V W +II
Sbjct: 357 ATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAII 416
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALID 320
G +A+ L ++ VKPN V V+VL AC + + + G +N++
Sbjct: 417 MGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWG----YFNSMTK 472
Query: 321 MYG 323
+YG
Sbjct: 473 VYG 475
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 100/229 (43%), Gaps = 53/229 (23%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G ++H ++I G++ ++GS L++++ +W S++ Y
Sbjct: 261 GKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQ 320
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G Y E + LF M+ V+P V AC+ L +GK ++ Y++ F N +
Sbjct: 321 NGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFI 380
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
L+D++ KCG ++ +F+ M N L D V
Sbjct: 381 ASALVDMYSKCGNIKAARKIFDRM-------NVL-----------------------DEV 410
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
SW A++ G+AL G E +L +EM+ + ++PN ++ VL AC+ V
Sbjct: 411 SWTAIIMGHALHGHGHEAVSLFEEMK--RQGVKPNQVAFVAVLTACSHV 457
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 162 bits (410), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 114/432 (26%), Positives = 204/432 (47%), Gaps = 87/432 (20%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCNW---------------------TSMMGMYNVLG 44
Q HA ++ G + ++ ++L+ + N+ +S++
Sbjct: 36 QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
+ + + +F M G+ PD V P ++K C+EL ++VGK ++ + +A V+
Sbjct: 96 LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQG 155
Query: 105 PLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLK-----VSHCKFSKIKQ 158
+ ++++CGRM +F+ M D+D + ++L+ YA+ L+ +S + S I +
Sbjct: 156 SMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGI-E 214
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
++VSWN +L+G+ G+ +E + ++ + P+ +++S VL + + + +G+
Sbjct: 215 ANIVSWNGILSGFNRSGYHKEAVVMFQKIHHL--GFCPDQVTVSSVLPSVGDSEMLNMGR 272
Query: 219 AIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRD--------------- 252
IHGYV++ I + G V S+FNQ +
Sbjct: 273 LIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNG 332
Query: 253 --------------------VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
VV W SII+ ++G+ ++AL+L R++ VA VKPN VTI
Sbjct: 333 LVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIP 392
Query: 293 SVLPACLKLAALPQGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMPHK 341
S+LPAC +AAL G T F V +ALIDMY +CG I S+ +F +MP K
Sbjct: 393 SMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTK 452
Query: 342 NLVSWNVMISVY 353
NLV WN +++ +
Sbjct: 453 NLVCWNSLMNGF 464
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 162/336 (48%), Gaps = 30/336 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W ++ +N GY++E V +F + G PD V + + + +G+ ++ Y+
Sbjct: 219 SWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYV 278
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSH 150
I + CV ++D++ K G + LF + + + V N+ I ++ + +
Sbjct: 279 IKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKAL 338
Query: 151 CKFSKIKQK----DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
F K++ ++VSW +++AG A G E L EM++ ++PN +++ +L
Sbjct: 339 EMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQV--AGVKPNHVTIPSMLP 396
Query: 207 ACAQVKGVKLGKAIHGYVLRHH----IHLSTA-------CGFVICSCSVFNQLSTRDVVV 255
AC + + G++ HG+ +R H +H+ +A CG + S VFN + T+++V
Sbjct: 397 ACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVC 456
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC------------LKLAA 303
WNS+++ F G+ + + + ++ +KP+ ++ S+L AC K+ +
Sbjct: 457 WNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMS 516
Query: 304 LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
G+ ++ ++++ GR G +Q++ + MP
Sbjct: 517 EEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMP 552
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 93/202 (46%), Gaps = 33/202 (16%)
Query: 11 LIVCGVELCAFLGSQLLEV-FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCP 69
L+ +E+ Q +E+ +WTS++ G E + LF M GV+P+H P
Sbjct: 333 LVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIP 392
Query: 70 KVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQD 129
+ AC + G+ + + + + N V L+D++ KCGR+ ++ +F M
Sbjct: 393 SMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMM--- 449
Query: 130 FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
K+LV WN+++ G+++ G +EV ++ + +
Sbjct: 450 ---------------------------PTKNLVCWNSLMNGFSMHGKAKEVMSIFE--SL 480
Query: 190 IQTDMQPNTISLSGVLAACAQV 211
++T ++P+ IS + +L+AC QV
Sbjct: 481 MRTRLKPDFISFTSLLSACGQV 502
>sp|O04659|PP398_ARATH Pentatricopeptide repeat-containing protein At5g27110
OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2
Length = 691
Score = 161 bits (408), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 105/345 (30%), Positives = 169/345 (48%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ + G E+ + LF M G P+ ACS L GK+++
Sbjct: 175 SWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIH--- 231
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
CVK+ E+D+ VN++L+D Y KC L+V+
Sbjct: 232 -------RKCVKKGF------------------ELDE--YVNSALVDMYGKCDCLEVARE 264
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K+ +K LV+WN+M+ GY G + +L+ M I +P+ +L+ +L AC++
Sbjct: 265 VFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRM--IIEGTRPSQTTLTSILMACSRS 322
Query: 212 KGVKLGKAIHGYVLRH-----------HIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ + GK IHGYV+R I L CG + +VF++ WN +I
Sbjct: 323 RNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMI 382
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
S+++ G A+++ ++ VKP+ VT SVLPAC +LAAL +G L
Sbjct: 383 SSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLE 442
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
T + +AL+DMY +CG +++ +IF +P K++VSW VMIS YG
Sbjct: 443 TDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYG 487
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 154/344 (44%), Gaps = 55/344 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGV-RPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W S+M Y+ + + + +F +++ + PD F P V KA L +G+ ++ +
Sbjct: 74 WNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFLGRMIHTLV 133
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ G C D +V +SL+ YAK + S
Sbjct: 134 VK---SGYVC---------------------------DVVVASSLVGMYAKFNLFENSLQ 163
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ ++D+ SWN +++ + G E+ L ME + +PN++SL+ ++AC+++
Sbjct: 164 VFDEMPERDVASWNTVISCFYQSGEAEKALELFGRME--SSGFEPNSVSLTVAISACSRL 221
Query: 212 KGVKLGKAIH------GYVLRHHIHLSTACGFVICSC-----SVFNQLSTRDVVVWNSII 260
++ GK IH G+ L +++ + + C C VF ++ + +V WNS+I
Sbjct: 222 LWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMI 281
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
+V G +++L +I+ +P+ T+ S+L AC + L G +
Sbjct: 282 KGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVN 341
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+V +LID+Y +CG + +F SWNVMIS Y
Sbjct: 342 ADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSY 385
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/386 (24%), Positives = 167/386 (43%), Gaps = 76/386 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF--CN-------------------WTSMMGM 39
+E G ++H + G EL ++ S L++++ C+ W SM+
Sbjct: 224 LERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKG 283
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G + V + MI +G RP + ACS ++ GK ++ Y+I
Sbjct: 284 YVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVI------- 336
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
R +++ D VN SLID Y KC ++ FSK ++
Sbjct: 337 ----RSVVN-------------------ADIYVNCSLIDLYFKCGEANLAETVFSKTQKD 373
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
SWN M++ Y G + + D+M + ++P+ ++ + VL AC+Q+ ++ GK
Sbjct: 374 VAESWNVMISSYISVGNWFKAVEVYDQM--VSVGVKPDVVTFTSVLPACSQLAALEKGKQ 431
Query: 220 IH-----------GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH +L + + + CG + +FN + +DVV W +ISA+ GQ
Sbjct: 432 IHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQ 491
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WN 316
+AL ++ +KP+ VT+++VL AC + +GL S + ++
Sbjct: 492 PREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYS 551
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKN 342
+ID+ GR G + ++ +I P +
Sbjct: 552 CMIDILGRAGRLLEAYEIIQQTPETS 577
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 124/264 (46%), Gaps = 50/264 (18%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK-----DLVSWNAMLAGYALGGFREEV 180
+ +D ++ SLI+ Y C+ HC + + D+ WN++++GY+
Sbjct: 35 LRRDVVLCKSLINVYFTCK----DHCSARHVFENFDIRSDVYIWNSLMSGYSKNSM---- 86
Query: 181 TNLLDEMEMIQTDMQ-----PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTAC 235
D +E+ + + P++ + V+ A + LG+ IH V++ C
Sbjct: 87 --FHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFLGRMIHTLVVKS----GYVC 140
Query: 236 GFVICSC---------------SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280
V+ S VF+++ RDV WN++IS F +SG+ AL+L +
Sbjct: 141 DVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELFGRME 200
Query: 281 VANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQ 329
+ +PN+V++ + AC +L L +G +V +AL+DMYG+C ++
Sbjct: 201 SSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLE 260
Query: 330 KSRKIFVLMPHKNLVSWNVMISVY 353
+R++F MP K+LV+WN MI Y
Sbjct: 261 VAREVFQKMPRKSLVAWNSMIKGY 284
>sp|Q9C507|PP111_ARATH Putative pentatricopeptide repeat-containing protein At1g69350,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E66 PE=3
SV=1
Length = 787
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 108/393 (27%), Positives = 183/393 (46%), Gaps = 75/393 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLL-------------EVF--------CNWTSMMGM 39
+ +G +VH +I GV+ A + + LL +VF W++++
Sbjct: 117 LSVGGKVHGRIIKGGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSS 176
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
G + + +F M+D GV PD V + C+EL R+ + V+
Sbjct: 177 CLENGEVVKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHG---------- 226
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+IT +F D D + NSL+ Y+KC L S F KI +K
Sbjct: 227 -----------------QITRKMF---DLDETLCNSLLTMYSKCGDLLSSERIFEKIAKK 266
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+ VSW AM++ Y G F E+ L EMI++ ++PN ++L VL++C + ++ GK+
Sbjct: 267 NAVSWTAMISSYNRGEFSEKA--LRSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKS 324
Query: 220 IHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
+HG+ +R + L CG + +V +S R++V WNS+IS + G
Sbjct: 325 VHGFAVRRELDPNYESLSLALVELYAECGKLSDCETVLRVVSDRNIVAWNSLISLYAHRG 384
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG----------TGSFVWNA 317
V+ AL L R ++ +KP+ T+ S + AC +P G + FV N+
Sbjct: 385 MVIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPLGKQIHGHVIRTDVSDEFVQNS 444
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
LIDMY + G++ + +F + H+++V+WN M+
Sbjct: 445 LIDMYSKSGSVDSASTVFNQIKHRSVVTWNSML 477
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/343 (25%), Positives = 161/343 (46%), Gaps = 51/343 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WT+M+ YN + E+ + F MI G+ P+ V +C + R GK V+ +
Sbjct: 270 SWTAMISSYNRGEFSEKALRSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKSVHGFA 329
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + + N +E + +L++ YA+C L
Sbjct: 330 VRRELDPN-----------------------YESLSL------ALVELYAECGKLSDCET 360
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
+ +++V+WN++++ YA G + L +M+ ++P+ +L+ ++AC
Sbjct: 361 VLRVVSDRNIVAWNSLISLYAHRGMVIQALGLF--RQMVTQRIKPDAFTLASSISACENA 418
Query: 212 KGVKLGKAIHGYVLRHH----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
V LGK IHG+V+R I + + G V + +VFNQ+ R VV WNS++
Sbjct: 419 GLVPLGKQIHGHVIRTDVSDEFVQNSLIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLC 478
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS--------- 312
F ++G V+A+ L + + ++ N VT ++V+ AC + +L +G
Sbjct: 479 GFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLIISGLKD 538
Query: 313 -FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
F ALIDMY +CG + + +F M +++VSW+ MI+ YG
Sbjct: 539 LFTDTALIDMYAKCGDLNAAETVFRAMSSRSIVSWSSMINAYG 581
Score = 111 bits (278), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 91/398 (22%), Positives = 178/398 (44%), Gaps = 84/398 (21%)
Query: 6 QVHAHLIVCG------------VELCAFLGSQ-----LLEVFCNWTSMMGMYNVL----- 43
Q+HAHL+V G +E AF+GS + E F S M Y VL
Sbjct: 19 QLHAHLLVTGRLRRDPLPVTKLIESYAFMGSPDSSRLVFEAFPYPDSFM--YGVLIKCNV 76
Query: 44 --GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY-RVGKDVYDYMISIKFEGNA 100
+ ++L++ ++ + + FV P V +AC+ +++ VG V+
Sbjct: 77 WCHLLDAAIDLYHRLVSETTQISKFVFPSVLRACAGSREHLSVGGKVH------------ 124
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
GR+ I G+ D D ++ SL+ Y + L + F + +D
Sbjct: 125 -------------GRI-IKGGV----DDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRD 166
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEME-MIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
LV+W+ +++ G EV L + M+ ++P+ +++ V+ CA++ +++ ++
Sbjct: 167 LVAWSTLVSSCLENG---EVVKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARS 223
Query: 220 IHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+HG + R L + CG ++ S +F +++ ++ V W ++IS++ R
Sbjct: 224 VHGQITRKMFDLDETLCNSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEF 283
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN------------ 316
AL ++I + ++PN VT+ SVL +C + + +G F
Sbjct: 284 SEKALRSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELDPNYESLSL 343
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
AL+++Y CG + + ++ +N+V+WN +IS+Y
Sbjct: 344 ALVELYAECGKLSDCETVLRVVSDRNIVAWNSLISLYA 381
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 148/328 (45%), Gaps = 54/328 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ +Y G + + LF M+ + ++PD F AC +GK ++ ++I
Sbjct: 373 WNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPLGKQIHGHVI 432
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
R +++ D V NSLID Y+K + +
Sbjct: 433 ----------------------RTDVS---------DEFVQNSLIDMYSKSGSVDSASTV 461
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F++IK + +V+WN+ML G++ G E +L D M + ++ N ++ V+ AC+ +
Sbjct: 462 FNQIKHRSVVTWNSMLCGFSQNGNSVEAISLFDYM--YHSYLEMNEVTFLAVIQACSSIG 519
Query: 213 GVKLGKAIHGYVL----------RHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISA 262
++ GK +H ++ I + CG + + +VF +S+R +V W+S+I+A
Sbjct: 520 SLEKGKWVHHKLIISGLKDLFTDTALIDMYAKCGDLNAAETVFRAMSSRSIVSWSSMINA 579
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTG 311
+ G++ A+ ++ + KPN V ++VL AC ++ + G+
Sbjct: 580 YGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSACGHSGSVEEGKYYFNLMKSFGVSPN 639
Query: 312 SFVWNALIDMYGRCGAIQKSRKIFVLMP 339
S + ID+ R G ++++ + MP
Sbjct: 640 SEHFACFIDLLSRSGDLKEAYRTIKEMP 667
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 94/237 (39%), Gaps = 55/237 (23%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYN 41
LG Q+H H+I V F+ + L++++ W SM+ ++
Sbjct: 423 LGKQIHGHVIRTDVS-DEFVQNSLIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLCGFS 481
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G E ++LF M + + V +ACS + GK V+ +
Sbjct: 482 QNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKL---------- 531
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
I SGL +D + +LID YAKC L + F + + +
Sbjct: 532 ----------------IISGL-----KDLFTDTALIDMYAKCGDLNAAETVFRAMSSRSI 570
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
VSW++M+ Y + G + + +M+++ +PN + VL+AC V+ GK
Sbjct: 571 VSWSSMINAYGMHGRIGSAISTFN--QMVESGTKPNEVVFMNVLSACGHSGSVEEGK 625
Score = 35.4 bits (80), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 5/158 (3%)
Query: 36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIK 95
M+ Y + G ++ F M++ G +P+ V V AC GK ++ M S
Sbjct: 576 MINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSACGHSGSVEEGKYYFNLMKSFG 635
Query: 96 FEGNACVKRPLLDLFIKCGRMEITSGLFEEMD--QDFLVNNSLID---FYAKCRYLKVSH 150
N+ +DL + G ++ +EM D V SL++ + K +K
Sbjct: 636 VSPNSEHFACFIDLLSRSGDLKEAYRTIKEMPFLADASVWGSLVNGCRIHQKMDIIKAIK 695
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
S I D + + YA G EE L M+
Sbjct: 696 NDLSDIVTDDTGYYTLLSNIYAEEGEWEEFRRLRSAMK 733
>sp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400
OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2
Length = 621
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/389 (25%), Positives = 185/389 (47%), Gaps = 72/389 (18%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVF-CNWTSMM-----------------GMYNVLGYYE 47
Q+ A +++ VE FL + +E+ N++S + G+ N +E
Sbjct: 55 QIQAQMLLHSVEKPNFLIPKAVELGDFNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHE 114
Query: 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL 107
++L+ M G++PD F V+ AC++L++ VG+ V+ + + E
Sbjct: 115 AALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLE---------- 164
Query: 108 DLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAM 167
+D +N+SLI YAKC + + F +I ++D VSWN+M
Sbjct: 165 --------------------RDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSM 204
Query: 168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH 227
++GY+ G+ ++ +L +ME + +P+ +L +L AC+ + ++ G+ + +
Sbjct: 205 ISGYSEAGYAKDAMDLFRKME--EEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITK 262
Query: 228 HIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL 276
I LST CG + + VFNQ+ +D V W ++I+ + ++G+ +A L
Sbjct: 263 KIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLF 322
Query: 277 RDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRC 325
++ V P+ T+ +VL AC + AL G L +V L+DMYG+C
Sbjct: 323 FEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKC 382
Query: 326 GAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G ++++ ++F MP KN +WN MI+ Y
Sbjct: 383 GRVEEALRVFEAMPVKNEATWNAMITAYA 411
Score = 122 bits (305), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 152/331 (45%), Gaps = 52/331 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y+ GY ++ ++LF M ++G PD + ACS L D R G+
Sbjct: 200 SWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGR------ 253
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
E A K+ L F+ + LI Y KC L +
Sbjct: 254 ---LLEEMAITKKIGLSTFL---------------------GSKLISMYGKCGDLDSARR 289
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+++ +KD V+W AM+ Y+ G E L EME +T + P+ +LS VL+AC V
Sbjct: 290 VFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEME--KTGVSPDAGTLSTVLSACGSV 347
Query: 212 KGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
++LGK I + L+H+I+++T CG V + VF + ++ WN++I
Sbjct: 348 GALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMI 407
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALID 320
+A+ G +AL LL D + +V P+ +T + VL AC+ + QG ++ +
Sbjct: 408 TAYAHQGHAKEAL-LLFDRM--SVPPSDITFIGVLSACVHAGLVHQGCR----YFHEMSS 460
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLV--SWNVM 349
M+G I+ I L+ ++ +W M
Sbjct: 461 MFGLVPKIEHYTNIIDLLSRAGMLDEAWEFM 491
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 121/315 (38%), Gaps = 88/315 (27%)
Query: 12 IVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNVLGYYEEIV 50
I + L FLGS+L+ ++ WT+M+ +Y+ G E
Sbjct: 260 ITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAF 319
Query: 51 NLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLF 110
LF+ M GV PD V AC + +GK + + + + N V L+D++
Sbjct: 320 KLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMY 379
Query: 111 IKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAG 170
KCGR+E +FE M K+ +WNAM+
Sbjct: 380 GKCGRVEEALRVFEAM------------------------------PVKNEATWNAMITA 409
Query: 171 YALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH 230
YA G +E L D M + P+ I+ GVL+AC +H
Sbjct: 410 YAHQGHAKEALLLFDRM-----SVPPSDITFIGVLSAC-----------VH--------- 444
Query: 231 LSTACGFVICSCSVFNQLSTRDVVV-----WNSIISAFVRSGQVVDALDLLRDVIVANVK 285
G V C F+++S+ +V + +II R+G + +A + + K
Sbjct: 445 ----AGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERF---PGK 497
Query: 286 PNTVTIVSVLPACLK 300
P+ + + ++L AC K
Sbjct: 498 PDEIMLAAILGACHK 512
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 155 bits (391), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 94/332 (28%), Positives = 166/332 (50%), Gaps = 25/332 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ + G ++ + LF M + V+ H V AC+++++ G+ V Y+
Sbjct: 199 SWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYI 258
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFYAKCRYLKVSH 150
+ N + +LD++ KCG +E LF+ M++ D + +++D YA + +
Sbjct: 259 EENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAR 318
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+ + QKD+V+WNA+++ Y G E + E+++ Q +M+ N I+L L+ACAQ
Sbjct: 319 EVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQL-QKNMKLNQITLVSTLSACAQ 377
Query: 211 VKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
V ++LG+ IH Y+ +H I H+ + CG + S VFN + RDV VW+++
Sbjct: 378 VGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAM 437
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------G 307
I G +A+D+ + ANVKPN VT +V AC + + G
Sbjct: 438 IGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYG 497
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+ + ++D+ GR G ++K+ K MP
Sbjct: 498 IVPEEKHYACIVDVLGRSGYLEKAVKFIEAMP 529
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 141/277 (50%), Gaps = 58/277 (20%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCK-FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187
D V NSLI Y C L S CK F+ IK+KD+VSWN+M+ G+ G ++ L +M
Sbjct: 165 DVFVANSLIHCYFSCGDLD-SACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKM 223
Query: 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS-----------TACG 236
E D++ + +++ GVL+ACA+++ ++ G+ + Y+ + ++++ T CG
Sbjct: 224 E--SEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCG 281
Query: 237 FV-------------------------------ICSCSVFNQLSTRDVVVWNSIISAFVR 265
+ + V N + +D+V WN++ISA+ +
Sbjct: 282 SIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQ 341
Query: 266 SGQVVDALDLLRDV-IVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF----------- 313
+G+ +AL + ++ + N+K N +T+VS L AC ++ AL G S+
Sbjct: 342 NGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFH 401
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
V +ALI MY +CG ++KSR++F + +++ W+ MI
Sbjct: 402 VTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMI 438
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 119/225 (52%), Gaps = 25/225 (11%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI-QTDMQPNTISLSGVLAACAQV 211
F +I + + +WN ++ YA G + V ++ ++M+ ++ PN + ++ A A+V
Sbjct: 87 FDEIPKPNSFAWNTLIRAYASGP--DPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEV 144
Query: 212 KGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ LG+++HG +V IH +CG + +C VF + +DVV WNS+I
Sbjct: 145 SSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMI 204
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW----- 315
+ FV+ G AL+L + + +VK + VT+V VL AC K+ L G S++
Sbjct: 205 NGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVN 264
Query: 316 ------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
NA++DMY +CG+I+ ++++F M K+ V+W M+ Y
Sbjct: 265 VNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYA 309
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 12/122 (9%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV-ANVKPNTVTIVSVLPACLKLA 302
VF+++ + WN++I A+ V ++ D++ + PN T ++ A +++
Sbjct: 86 VFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVS 145
Query: 303 ALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+L G +G+ FV N+LI Y CG + + K+F + K++VSWN MI+
Sbjct: 146 SLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMIN 205
Query: 352 VY 353
+
Sbjct: 206 GF 207
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/394 (24%), Positives = 193/394 (48%), Gaps = 77/394 (19%)
Query: 6 QVHAHLIVCGVELCAFLGSQLL-------------EVFCN--------WTSMMGMYNVLG 44
Q+HA L+V G++ FL ++L+ +VF + W +++ Y+
Sbjct: 39 QIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNN 98
Query: 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
++++ + ++ M V PD F P + KACS L ++G+ V+ + + F
Sbjct: 99 HFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGF-------- 150
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFS--KIKQKDLV 162
D D V N LI YAKCR L + F + ++ +V
Sbjct: 151 ----------------------DADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIV 188
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW A+++ YA G E + +M + D++P+ ++L VL A ++ +K G++IH
Sbjct: 189 SWTAIVSAYAQNGEPMEALEIFSQMR--KMDVKPDWVALVSVLNAFTCLQDLKQGRSIHA 246
Query: 223 YVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V++ + + CG V + +F+++ + ++++WN++IS + ++G +
Sbjct: 247 SVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYARE 306
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTGS-----FVWNALID 320
A+D+ ++I +V+P+T++I S + AC ++ +L Q +G F+ +ALID
Sbjct: 307 AIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALID 366
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
M+ +CG+++ +R +F +++V W+ MI YG
Sbjct: 367 MFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYG 400
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/372 (26%), Positives = 172/372 (46%), Gaps = 56/372 (15%)
Query: 5 IQVHAHLIVCGVELCAFLGSQLLE-VFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRP 63
I ++A G F G L E +WT+++ Y G E + +F M V+P
Sbjct: 161 IALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKP 220
Query: 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLF 123
D V A + L+D + G+ ++ ++ + GL
Sbjct: 221 DWVALVSVLNAFTCLQDLKQGRSIHASVVKM--------------------------GL- 253
Query: 124 EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNL 183
E++ D L+ SL YAKC + + F K+K +L+ WNAM++GYA G+ E ++
Sbjct: 254 -EIEPDLLI--SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDM 310
Query: 184 LDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA----- 234
EM I D++P+TIS++ ++ACAQV ++ ++++ YV R + +S+A
Sbjct: 311 FHEM--INKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMF 368
Query: 235 --CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
CG V + VF++ RDVVVW+++I + G+ +A+ L R + V PN VT +
Sbjct: 369 AKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFL 428
Query: 293 SVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-H 340
+L AC + +G + + +ID+ GR G + ++ ++ MP
Sbjct: 429 GLLMACNHSGMVREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQ 488
Query: 341 KNLVSWNVMISV 352
+ W ++S
Sbjct: 489 PGVTVWGALLSA 500
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 152 bits (385), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 111/406 (27%), Positives = 193/406 (47%), Gaps = 85/406 (20%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYY---------------- 46
+G QVHA+ + G EL +F+ + L+ ++ + +LG +
Sbjct: 220 MGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLC 278
Query: 47 --EEIVN-LFYL--MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
E+++ L YL M+ +GV PD F V ACS L+ R GK+++ Y +
Sbjct: 279 QNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYAL--------- 329
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
K G +D++ V ++L+D Y C+ + F + + +
Sbjct: 330 ----------KNG----------SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKI 369
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
WNAM+AGY+ +E L ME + N+ +++GV+ AC + +AIH
Sbjct: 370 GLWNAMIAGYSQNEHDKEALLLFIGMEE-SAGLLANSTTMAGVVPACVRSGAFSRKEAIH 428
Query: 222 GYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
G+V++ + + + G + + +F ++ RD+V WN++I+ +V S
Sbjct: 429 GFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHE 488
Query: 271 DALDLL-----------RDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------L 308
DAL LL + ++KPN++T++++LP+C L+AL +G L
Sbjct: 489 DALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNL 548
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
T V +AL+DMY +CG +Q SRK+F +P KN+++WNV+I YG
Sbjct: 549 ATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYG 594
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/385 (25%), Positives = 181/385 (47%), Gaps = 65/385 (16%)
Query: 1 MELGIQVHAHLIVCG-VELCAFLGSQLLEVFCNWTSMMGMYNVL-GYYEEIVNLFYLMID 58
+ G ++HA+ + G ++ +F+GS L++++CN ++ V G ++ + L+ MI
Sbjct: 318 LRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIA 377
Query: 59 KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE------GNACVKRPLLDLFIK 112
+ +H D ++ I E N+ ++ ++
Sbjct: 378 GYSQNEH--------------------DKEALLLFIGMEESAGLLANSTTMAGVVPACVR 417
Query: 113 CG---RMEITSGLF--EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAM 167
G R E G +D+D V N+L+D Y++ + ++ F K++ +DLV+WN M
Sbjct: 418 SGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTM 477
Query: 168 LAGYALGGFREEVTNLLDEMEMIQ---------TDMQPNTISLSGVLAACAQVKGVKLGK 218
+ GY E+ LL +M+ ++ ++PN+I+L +L +CA + + GK
Sbjct: 478 ITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGK 537
Query: 219 AIHGYVLRHHIHLSTACG------FVICSC-----SVFNQLSTRDVVVWNSIISAFVRSG 267
IH Y +++++ A G + C C VF+Q+ ++V+ WN II A+ G
Sbjct: 538 EIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHG 597
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL------------GTGSFVW 315
+A+DLLR ++V VKPN VT +SV AC + +GL S +
Sbjct: 598 NGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHY 657
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPH 340
++D+ GR G I+++ ++ +MP
Sbjct: 658 ACVVDLLGRAGRIKEAYQLMNMMPR 682
Score = 131 bits (329), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 160/332 (48%), Gaps = 56/332 (16%)
Query: 47 EEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPL 106
E V + MI G++PD++ P + KA ++L+D +GK ++ ++ + ++
Sbjct: 79 REAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVT---- 134
Query: 107 LDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNA 166
V N+L++ Y KC + F +I +++ VSWN+
Sbjct: 135 -------------------------VANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNS 169
Query: 167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV---KGVKLGKAIHGY 223
+++ +L F + L M+ +++P++ +L V+ AC+ + +G+ +GK +H Y
Sbjct: 170 LIS--SLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAY 227
Query: 224 VLRHH----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
LR + + G + S + RD+V WN+++S+ ++ Q+++AL
Sbjct: 228 GLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEAL 287
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNALIDM 321
+ LR++++ V+P+ TI SVLPAC L L G L SFV +AL+DM
Sbjct: 288 EYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDM 347
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
Y C + R++F M + + WN MI+ Y
Sbjct: 348 YCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGY 379
Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 102/404 (25%), Positives = 175/404 (43%), Gaps = 86/404 (21%)
Query: 1 MELGIQVHAHLIVCGVEL---------------CAFLGSQLLEVF--------CNWTSMM 37
MELG Q+HAH+ G + C G+ + +VF +W S++
Sbjct: 113 MELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGA-VYKVFDRISERNQVSWNSLI 171
Query: 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL---KDYRVGKDVYDYMISI 94
+E + F M+D+ V P F V ACS L + +GK V+ Y
Sbjct: 172 SSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAY---- 227
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFS 154
GL + F++ N+L+ Y K L S
Sbjct: 228 --------------------------GLRKGELNSFII-NTLVAMYGKLGKLASSKVLLG 260
Query: 155 KIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM-EMIQTDMQPNTISLSGVLAACAQVKG 213
+DLV+WN +L+ E++ L+ + EM+ ++P+ ++S VL AC+ ++
Sbjct: 261 SFGGRDLVTWNTVLSSLCQN---EQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEM 317
Query: 214 VKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ GK +H Y L++ + + C V+ VF+ + R + +WN++I+
Sbjct: 318 LRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIA 377
Query: 262 AFVRSGQVVDALDLLRDV-IVANVKPNTVTIVSVLPACLKLAA-----------LPQGLG 309
+ ++ +AL L + A + N+ T+ V+PAC++ A + +GL
Sbjct: 378 GYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLD 437
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
FV N L+DMY R G I + +IF M ++LV+WN MI+ Y
Sbjct: 438 RDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGY 481
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 17/168 (10%)
Query: 198 TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA--CGFVICSCSVFNQLSTRDVVV 255
T SL + +Q+ + + H Y+LR +T V + S+F S R
Sbjct: 8 TFSLPSIFPFPSQL--LPFSRHKHPYLLRATPTSATEDVASAVSGAPSIFISQS-RSPEW 64
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW 315
W ++ + VRS + +A+ D+IV +KP+ ++L A L + G + V+
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124
Query: 316 ------------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
N L+++Y +CG K+F + +N VSWN +IS
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLIS 172
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 30/153 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G ++HA+ I + +GS L++++ W ++ Y +
Sbjct: 536 GKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGM 595
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY-----DYMISIKFE 97
G +E ++L +M+ +GV+P+ V+ ACS G ++ DY + +
Sbjct: 596 HGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSD 655
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDF 130
ACV +DL + GR++ L M +DF
Sbjct: 656 HYACV----VDLLGRAGRIKEAYQLMNMMPRDF 684
>sp|Q0WNP3|PP319_ARATH Pentatricopeptide repeat-containing protein At4g18520
OS=Arabidopsis thaliana GN=PCMP-A2 PE=2 SV=1
Length = 617
Score = 152 bits (383), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 113/397 (28%), Positives = 180/397 (45%), Gaps = 78/397 (19%)
Query: 2 ELGIQVHAHLIVCGV-------------ELCAFLGSQLLEV-------FCNWTSMMGMYN 41
ELG QVH +++ GV C L S L +WT+++ +
Sbjct: 201 ELGRQVHGNMVKVGVGNLIVESSLVYFYAQCGELTSALRAFDMMEEKDVISWTAVISACS 260
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G+ + + +F M++ P+ F + KACSE K R G+ V+ ++
Sbjct: 261 RKGHGIKAIGMFIGMLNHWFLPNEFTVCSILKACSEEKALRFGRQVHSLVVK-------- 312
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK--FSKIKQK 159
RM + D V SL+D YAKC ++S C+ F + +
Sbjct: 313 -------------RM---------IKTDVFVGTSLMDMYAKCG--EISDCRKVFDGMSNR 348
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
+ V+W +++A +A GF EE +L M+ + + N +++ +L AC V + LGK
Sbjct: 349 NTVTWTSIIAAHAREGFGEEAISLFRIMK--RRHLIANNLTVVSILRACGSVGALLLGKE 406
Query: 220 IHGYVLRHHIHLSTACG----FVICSC-------SVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H ++++ I + G ++ C C +V QL +RDVV W ++IS G
Sbjct: 407 LHAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGH 466
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNA 317
+ALD L+++I V+PN T S L AC +L G S FV +A
Sbjct: 467 ESEALDFLKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSA 526
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
LI MY +CG + ++ ++F MP KNLVSW MI Y
Sbjct: 527 LIHMYAKCGFVSEAFRVFDSMPEKNLVSWKAMIMGYA 563
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 156/345 (45%), Gaps = 60/345 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH---FVCPKVYKACSELKDYRVGKDVY 88
WT+M+ Y G +E LF + G+R + FVC + CS ++ +G+ V+
Sbjct: 150 TWTAMIDGYLKYGLEDEAFALFEDYVKHGIRFTNERMFVC--LLNLCSRRAEFELGRQVH 207
Query: 89 DYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKV 148
M+ + GN V+ L+ + +CG E+TS L
Sbjct: 208 GNMVKVGV-GNLIVESSLVYFYAQCG--ELTSALR------------------------- 239
Query: 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208
F +++KD++SW A+++ + G + + + M+ PN ++ +L AC
Sbjct: 240 ---AFDMMEEKDVISWTAVISACSRKGHGIKAIGMF--IGMLNHWFLPNEFTVCSILKAC 294
Query: 209 AQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWN 257
++ K ++ G+ +H V++ I + CG + VF+ +S R+ V W
Sbjct: 295 SEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWT 354
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------- 307
SII+A R G +A+ L R + ++ N +T+VS+L AC + AL G
Sbjct: 355 SIIAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLGKELHAQIIKN 414
Query: 308 -LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ ++ + L+ +Y +CG + + + +P +++VSW MIS
Sbjct: 415 SIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMIS 459
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 144/330 (43%), Gaps = 64/330 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ G QVH+ ++ ++ F+G+ L++++ WTS++
Sbjct: 300 LRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWTSIIAA 359
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ G+ EE ++LF +M + + ++ + +AC + +GK+++ +I E N
Sbjct: 360 HAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLGKELHAQIIKNSIEKN 419
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ L+ L+ KCG E F V ++ +
Sbjct: 420 VYIGSTLVWLYCKCG----------ESRDAFNV--------------------LQQLPSR 449
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSW AM++G + G E + L EM IQ ++PN + S L ACA + + +G++
Sbjct: 450 DVVSWTAMISGCSSLGHESEALDFLKEM--IQEGVEPNPFTYSSALKACANSESLLIGRS 507
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IH ++H IH+ CGFV + VF+ + +++V W ++I + R+G
Sbjct: 508 IHSIAKKNHALSNVFVGSALIHMYAKCGFVSEAFRVFDSMPEKNLVSWKAMIMGYARNGF 567
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+AL L+ + + + ++L C
Sbjct: 568 CREALKLMYRMEAEGFEVDDYIFATILSTC 597
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 117/250 (46%), Gaps = 24/250 (9%)
Query: 127 DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDE 186
DQ N+LI + L + F + +K+ V+W AM+ GY G +E L +
Sbjct: 114 DQVIYFGNNLISSCVRLGDLVYARKVFDSMPEKNTVTWTAMIDGYLKYGLEDEAFALFE- 172
Query: 187 MEMIQTDMQ-PNTISLSGVLAACAQVKGVKLGKAIHGYVLR----------HHIHLSTAC 235
+ ++ ++ N +L C++ +LG+ +HG +++ ++ C
Sbjct: 173 -DYVKHGIRFTNERMFVCLLNLCSRRAEFELGRQVHGNMVKVGVGNLIVESSLVYFYAQC 231
Query: 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295
G + + F+ + +DV+ W ++ISA R G + A+ + ++ PN T+ S+L
Sbjct: 232 GELTSALRAFDMMEEKDVISWTAVISACSRKGHGIKAIGMFIGMLNHWFLPNEFTVCSIL 291
Query: 296 PACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLV 344
AC + AL G + T FV +L+DMY +CG I RK+F M ++N V
Sbjct: 292 KACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTV 351
Query: 345 SWNVMISVYG 354
+W +I+ +
Sbjct: 352 TWTSIIAAHA 361
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 102/231 (44%), Gaps = 53/231 (22%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYN 41
LG ++HA +I +E ++GS L+ ++C +WT+M+ +
Sbjct: 403 LGKELHAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCS 462
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
LG+ E ++ MI +GV P+ F KAC+ + +G+ ++ SI + +A
Sbjct: 463 SLGHESEALDFLKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIH----SIAKKNHA- 517
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
L ++F V ++LI YAKC ++ + F + +K+L
Sbjct: 518 ----LSNVF---------------------VGSALIHMYAKCGFVSEAFRVFDSMPEKNL 552
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
VSW AM+ GYA GF E L+ ME + + + +L+ C ++
Sbjct: 553 VSWKAMIMGYARNGFCREALKLMYRME--AEGFEVDDYIFATILSTCGDIE 601
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/363 (28%), Positives = 180/363 (49%), Gaps = 42/363 (11%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-GVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W S++ Y LG + + +F M ++ G RPD+ V C+ L + +GK ++ +
Sbjct: 195 SWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCF 254
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVS 149
++ + N V L+D++ KCG M+ + +F M +D + N+++ Y++ + +
Sbjct: 255 AVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDA 314
Query: 150 HCKFSKIKQK----DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
F K++++ D+V+W+A ++GYA G E + +M+ + ++PN ++L VL
Sbjct: 315 VRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVC--RQMLSSGIKPNEVTLISVL 372
Query: 206 AACAQVKGVKLGKAIHGYVLRHHIHLS------------------TACGFVICSCSVFNQ 247
+ CA V + GK IH Y +++ I L C V + ++F+
Sbjct: 373 SGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDS 432
Query: 248 LST--RDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN--VKPNTVTIVSVLPACLKLAA 303
LS RDVV W +I + + G AL+LL ++ + +PN TI L AC LAA
Sbjct: 433 LSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAA 492
Query: 304 LPQGLGTGS------------FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
L G + FV N LIDMY +CG+I +R +F M KN V+W +++
Sbjct: 493 LRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMT 552
Query: 352 VYG 354
YG
Sbjct: 553 GYG 555
Score = 121 bits (304), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 94/388 (24%), Positives = 159/388 (40%), Gaps = 97/388 (25%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ Y G + + LF LM PD++ P V+KAC E+ R G+ +
Sbjct: 94 HWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALS 153
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F N V N+L+ Y++CR L +
Sbjct: 154 LVTGFISNV------------------------------FVGNALVAMYSRCRSLSDARK 183
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ D+VSWN+++ YA G + + M + +P+ I+L VL CA +
Sbjct: 184 VFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTN-EFGCRPDNITLVNVLPPCASL 242
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
LGK +H + + + + CG + + +VF+ +S +DVV WN+++
Sbjct: 243 GTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMV 302
Query: 261 SAFVRSGQVVDALDLL-----------------------------------RDVIVANVK 285
+ + + G+ DA+ L R ++ + +K
Sbjct: 303 AGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIK 362
Query: 286 PNTVTIVSVLPACLKLAAL------------------PQGLGTGSFVWNALIDMYGRCGA 327
PN VT++SVL C + AL G G + V N LIDMY +C
Sbjct: 363 PNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKK 422
Query: 328 IQKSRKIF-VLMP-HKNLVSWNVMISVY 353
+ +R +F L P +++V+W VMI Y
Sbjct: 423 VDTARAMFDSLSPKERDVVTWTVMIGGY 450
Score = 111 bits (278), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 147/334 (44%), Gaps = 49/334 (14%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W++ + Y G E + + M+ G++P+ V C+ + GK+++ Y
Sbjct: 332 TWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYA 391
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I K P+ DL K G + + +V N LID YAKC+ + +
Sbjct: 392 I----------KYPI-DLR-KNGHGD-----------ENMVINQLIDMYAKCKKVDTARA 428
Query: 152 KFSKI--KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + K++D+V+W M+ GY+ G + LL EM +PN ++S L ACA
Sbjct: 429 MFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACA 488
Query: 210 QVKGVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTRDVVVWN 257
+ +++GK IH Y LR+ I + CG + + VF+ + ++ V W
Sbjct: 489 SLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWT 548
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL--------- 308
S+++ + G +AL + ++ K + VT++ VL AC + QG+
Sbjct: 549 SLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTV 608
Query: 309 ---GTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
G + L+D+ GR G + + ++ MP
Sbjct: 609 FGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMP 642
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 13/141 (9%)
Query: 227 HHIHLSTACGFVICSCSVFNQLSTRDVVV--WNSIISAFVRSGQVVDALDLLRDVIVANV 284
H I + G + + S+ + D V WNS+I ++ +G L L + +
Sbjct: 64 HLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSW 123
Query: 285 KPNTVTIVSVLPACLKLAA-----------LPQGLGTGSFVWNALIDMYGRCGAIQKSRK 333
P+ T V AC ++++ L G + FV NAL+ MY RC ++ +RK
Sbjct: 124 TPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARK 183
Query: 334 IFVLMPHKNLVSWNVMISVYG 354
+F M ++VSWN +I Y
Sbjct: 184 VFDEMSVWDVVSWNSIIESYA 204
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 26/195 (13%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WTS+M Y + GY EE + +F M G + D V ACS G + ++ M
Sbjct: 546 TWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRM 605
Query: 92 -----ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCR-Y 145
+S E AC L+DL + GR+ L EEM + + F + CR +
Sbjct: 606 KTVFGVSPGPEHYAC----LVDLLGRAGRLNAALRLIEEMPME-PPPVVWVAFLSCCRIH 660
Query: 146 LKVSHCKFSKIKQKDLV-----SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTIS 200
KV +++ K +L S+ + YA G ++VT + M +P
Sbjct: 661 GKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRP---- 716
Query: 201 LSGVLAACAQVKGVK 215
C+ V+G+K
Sbjct: 717 ------GCSWVEGIK 725
>sp|Q9C9I6|PP116_ARATH Pentatricopeptide repeat-containing protein At1g71490
OS=Arabidopsis thaliana GN=PCMP-E67 PE=2 SV=1
Length = 681
Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/400 (25%), Positives = 183/400 (45%), Gaps = 51/400 (12%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G+QVHAH I GVE + L +L+ + W ++ Y
Sbjct: 62 GVQVHAHCISSGVEYHSVLVPKLVTFYSAFNLHNEAQSIIENSDILHPLPWNVLIASYAK 121
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+EE++ + M+ KG+RPD F P V KAC E D G+ V+ + ++ + V
Sbjct: 122 NELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVVHGSIEVSSYKSSLYV 181
Query: 103 KRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKI----K 157
L+ ++ + M I LF+ M ++D + N++I+ YA + F K+
Sbjct: 182 CNALISMYKRFRNMGIARRLFDRMFERDAVSWNAVINCYASEGMWSEAFELFDKMWFSGV 241
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+ +++WN + G G L+ M T + P + + L AC+ + ++LG
Sbjct: 242 EVSVITWNIISGGCLQTGNYVGALGLISRMRNFPTSLDPVAMIIG--LKACSLIGAIRLG 299
Query: 218 KAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
K IHG + I + + C + + VF Q + WNSIIS + +
Sbjct: 300 KEIHGLAIHSSYDGIDNVRNTLITMYSKCKDLRHALIVFRQTEENSLCTWNSIISGYAQL 359
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFV 314
+ +A LLR+++VA +PN++T+ S+LP C ++A L G + +
Sbjct: 360 NKSEEASHLLREMLVAGFQPNSITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTML 419
Query: 315 WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
WN+L+D+Y + G I ++++ LM ++ V++ +I YG
Sbjct: 420 WNSLVDVYAKSGKIVAAKQVSDLMSKRDEVTYTSLIDGYG 459
Score = 114 bits (286), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 148/305 (48%), Gaps = 57/305 (18%)
Query: 73 KACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLV 132
KACS + R+GK+++ I ++G +D V
Sbjct: 288 KACSLIGAIRLGKEIHGLAIHSSYDG---------------------------IDN---V 317
Query: 133 NNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQT 192
N+LI Y+KC+ L+ + F + ++ L +WN++++GYA EE ++LL EM+
Sbjct: 318 RNTLITMYSKCKDLRHALIVFRQTEENSLCTWNSIISGYAQLNKSEEASHLL--REMLVA 375
Query: 193 DMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH------------IHLSTACGFVIC 240
QPN+I+L+ +L CA++ ++ GK H Y+LR + + G ++
Sbjct: 376 GFQPNSITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTMLWNSLVDVYAKSGKIVA 435
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ V + +S RD V + S+I + G+ AL L +++ + +KP+ VT+V+VL AC
Sbjct: 436 AKQVSDLMSKRDEVTYTSLIDGYGNQGEGGVALALFKEMTRSGIKPDHVTVVAVLSACSH 495
Query: 301 LAALPQG----------LGTGSFV--WNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWN 347
+ +G G + ++ ++D+YGR G + K++ I MP+K + +W
Sbjct: 496 SKLVHEGERLFMKMQCEYGIRPCLQHFSCMVDLYGRAGFLAKAKDIIHNMPYKPSGATWA 555
Query: 348 VMISV 352
+++
Sbjct: 556 TLLNA 560
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 78/177 (44%), Gaps = 22/177 (12%)
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYVLRHHIHL-STACGFVICSCSVFNQLSTRDVVV--- 255
S + +L+AC V+ G +H + + + S ++ S FN + ++
Sbjct: 45 SAASLLSACVDVRAFLAGVQVHAHCISSGVEYHSVLVPKLVTFYSAFNLHNEAQSIIENS 104
Query: 256 -------WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG- 307
WN +I+++ ++ + + + ++ ++P+ T SVL AC + + G
Sbjct: 105 DILHPLPWNVLIASYAKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGR 164
Query: 308 ----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ +V NALI MY R + +R++F M ++ VSWN +I+ Y
Sbjct: 165 VVHGSIEVSSYKSSLYVCNALISMYKRFRNMGIARRLFDRMFERDAVSWNAVINCYA 221
>sp|P0C898|PP232_ARATH Putative pentatricopeptide repeat-containing protein At3g15130
OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1
Length = 689
Score = 146 bits (368), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/396 (23%), Positives = 179/396 (45%), Gaps = 75/396 (18%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G QVH +L+ G L + L++++C +W+++M + +
Sbjct: 25 GGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVL 84
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G + ++LF M +G+ P+ F KAC L G ++ + + I FE
Sbjct: 85 NGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFE----- 139
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
+ ++ G NSL+D Y+KC + + F +I + L+
Sbjct: 140 ------MMVEVG-------------------NSLVDMYSKCGRINEAEKVFRRIVDRSLI 174
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SWNAM+AG+ G+ + + M+ +P+ +L+ +L AC+ + GK IHG
Sbjct: 175 SWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHG 234
Query: 223 YVLRHHIH-------------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
+++R H L CG++ + F+Q+ + ++ W+S+I + + G+
Sbjct: 235 FLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEF 294
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL-----------GTGSFVWNAL 318
V+A+ L + + N + ++ + S++ A L QG G + V N++
Sbjct: 295 VEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSV 354
Query: 319 IDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+DMY +CG + ++ K F M K+++SW V+I+ YG
Sbjct: 355 VDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYG 390
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/401 (20%), Positives = 174/401 (43%), Gaps = 81/401 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G+Q+H + G E+ +G+ L++++ +W +M+
Sbjct: 123 LEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAG 182
Query: 40 YNVLGYYEEIVNLFYLMIDKGV--RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
+ GY + ++ F +M + + RPD F + KACS GK ++ +++ F
Sbjct: 183 FVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFH 242
Query: 98 --GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSK 155
+A + L+DL++KCG YL + F +
Sbjct: 243 CPSSATITGSLVDLYVKCG------------------------------YLFSARKAFDQ 272
Query: 156 IKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA------ 209
IK+K ++SW++++ GYA G E L ++ + + Q ++ +LS ++ A
Sbjct: 273 IKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNS--QIDSFALSSIIGVFADFALLR 330
Query: 210 -----QVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
Q VKL + VL + + CG V + F ++ +DV+ W +I+ +
Sbjct: 331 QGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYG 390
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV---------- 314
+ G ++ + +++ N++P+ V ++VL AC + +G S +
Sbjct: 391 KHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRV 450
Query: 315 --WNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
+ ++D+ GR G +++++ + MP K N+ W ++S+
Sbjct: 451 EHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSL 491
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530
OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 145 bits (366), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 101/398 (25%), Positives = 184/398 (46%), Gaps = 74/398 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q+HAH++ G+E+ A L + L++ + +WT+++
Sbjct: 265 LEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSG 324
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y ++E + LF M G++PD + C + +C+ L G V+ Y I GN
Sbjct: 325 YKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANL-GN 383
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D V NSLID YAKC L + F
Sbjct: 384 -----------------------------DSYVTNSLIDMYAKCDCLTDARKVFDIFAAA 414
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDM-QPNTISLSGVLAACAQVKGVKLGK 218
D+V +NAM+ GY+ G + E+ L+ ++ + +P+ ++ +L A A + + L K
Sbjct: 415 DVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSK 474
Query: 219 AIHGYVLRHHIHLSTACGFVI------CSCS-----VFNQLSTRDVVVWNSIISAFVRSG 267
IHG + ++ ++L G + C C VF+++ +D+V+WNS+ + +V+
Sbjct: 475 QIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQS 534
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLGTGSFVWN 316
+ +AL+L ++ ++ +P+ T +++ A LA+ L +GL ++ N
Sbjct: 535 ENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITN 594
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
AL+DMY +CG+ + + K F +++V WN +IS Y
Sbjct: 595 ALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYA 632
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/347 (25%), Positives = 158/347 (45%), Gaps = 57/347 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
WT+M+ +G + LFY +++ V PD ++ V ACS L GK ++ ++
Sbjct: 216 TWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHI 275
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ E +A + L+D ++KCGR + +H
Sbjct: 276 LRYGLEMDASLMNVLIDSYVKCGR------------------------------VIAAHK 305
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ + K+++SW +L+GY +E L M + ++P+ + S +L +CA +
Sbjct: 306 LFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMS--KFGLKPDMYACSSILTSCASL 363
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+ G +H Y ++ + I + C + + VF+ + DVV++N++I
Sbjct: 364 HALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMI 423
Query: 261 SAFVRSG---QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQ 306
+ R G ++ +AL++ RD+ ++P+ +T VS+L A L +L
Sbjct: 424 EGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKY 483
Query: 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
GL F +ALID+Y C ++ SR +F M K+LV WN M + Y
Sbjct: 484 GLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGY 530
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/391 (24%), Positives = 173/391 (44%), Gaps = 74/391 (18%)
Query: 7 VHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNVLGY 45
VH +IV G+EL +L + L+ ++ +W++M+ N G
Sbjct: 66 VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGI 125
Query: 46 YEE-IVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104
YEE +V + P+ ++ +ACS L D R V+
Sbjct: 126 YEESLVVFLEFWRTRKDSPNEYILSSFIQACSGL-DGRGRWMVFQ--------------- 169
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164
L +K G D+D V LIDFY K + + F + +K V+W
Sbjct: 170 -LQSFLVKSG-----------FDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTW 217
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
M++G G +L ++++ ++ P+ LS VL+AC+ + ++ GK IH ++
Sbjct: 218 TTMISGCVKMG--RSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHI 275
Query: 225 LRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
LR+ + + + CG VI + +FN + ++++ W +++S + ++ +A+
Sbjct: 276 LRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAM 335
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMY 322
+L + +KP+ S+L +C L AL G LG S+V N+LIDMY
Sbjct: 336 ELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMY 395
Query: 323 GRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+C + +RK+F + ++V +N MI Y
Sbjct: 396 AKCDCLTDARKVFDIFAAADVVLFNAMIEGY 426
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/396 (23%), Positives = 167/396 (42%), Gaps = 79/396 (19%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYN 41
G QVHA+ I + +++ + L++++ + +M+ Y+
Sbjct: 368 FGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYS 427
Query: 42 VLGYY---EEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
LG E +N+F M + +RP + +A + L + K ++ M
Sbjct: 428 RLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMF------ 481
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
K G ++ D ++LID Y+ C LK S F ++K
Sbjct: 482 -------------KYG-----------LNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKV 517
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
KDLV WN+M AGY EE NL E+++ + +P+ + + ++ A + V+LG+
Sbjct: 518 KDLVIWNSMFAGYVQQSENEEALNLFLELQLSRE--RPDEFTFANMVTAAGNLASVQLGQ 575
Query: 219 AIH-----------GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
H Y+ + + CG + F+ ++RDVV WNS+IS++ G
Sbjct: 576 EFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHG 635
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------WN 316
+ AL +L ++ ++PN +T V VL AC + GL + +
Sbjct: 636 EGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEHYV 695
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMIS 351
++ + GR G + K+R++ MP K + W ++S
Sbjct: 696 CMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLS 731
Score = 35.4 bits (80), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/147 (19%), Positives = 58/147 (39%), Gaps = 21/147 (14%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
++LG + H L+ G+E ++ + LL+++ W S++
Sbjct: 571 VQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISS 630
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G ++ + + M+ +G+ P++ V ACS G ++ M+ E
Sbjct: 631 YANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPE 690
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEM 126
++ L + GR+ L E+M
Sbjct: 691 TEHYVCMVSLLGRAGRLNKARELIEKM 717
>sp|Q9XE98|PP303_ARATH Pentatricopeptide repeat-containing protein At4g04370
OS=Arabidopsis thaliana GN=PCMP-E99 PE=3 SV=1
Length = 729
Score = 145 bits (365), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 163/346 (47%), Gaps = 55/346 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y +G EI+ L Y M G+RPD + D +G+ ++ +
Sbjct: 212 SWNTMISGYASVGNMSEILKLLYRMRGDGLRPDQQTFGASLSVSGTMCDLEMGRMLHCQI 271
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F+ + +K L+ +++KCG+ E + + E
Sbjct: 272 VKTGFDVDMHLKTALITMYLKCGKEEASYRVLE--------------------------- 304
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
I KD+V W M++G G E+ + EM +D+ I + V+A+CAQ+
Sbjct: 305 ---TIPNKDVVCWTVMISGLMRLGRAEKALIVFSEMLQSGSDLSSEAI--ASVVASCAQL 359
Query: 212 KGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSII 260
LG ++HGYVLRH L T CG + S +F +++ RD+V WN+II
Sbjct: 360 GSFDLGASVHGYVLRHGYTLDTPALNSLITMYAKCGHLDKSLVIFERMNERDLVSWNAII 419
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKP-NTVTIVSVLPACLKLAALPQG-----------L 308
S + ++ + AL L ++ V+ ++ T+VS+L AC ALP G +
Sbjct: 420 SGYAQNVDLCKALLLFEEMKFKTVQQVDSFTVVSLLQACSSAGALPVGKLIHCIVIRSFI 479
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
S V AL+DMY +CG ++ +++ F + K++VSW ++I+ YG
Sbjct: 480 RPCSLVDTALVDMYSKCGYLEAAQRCFDSISWKDVVSWGILIAGYG 525
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/397 (23%), Positives = 171/397 (43%), Gaps = 78/397 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ G+ +H ++V G ++ S L+ ++ +WT+M+G
Sbjct: 62 LSFGLSIHQQVLVNGFSSDFYISSSLVNLYAKFGLLAHARKVFEEMRERDVVHWTAMIGC 121
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y+ G E +L M +G++P ++ E+ + ++D+ + F
Sbjct: 122 YSRAGIVGEACSLVNEMRFQGIKPGPVTLLEMLSGVLEITQLQC---LHDFAVIYGF--- 175
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
D D V NS+++ Y KC ++ + F +++Q+
Sbjct: 176 ---------------------------DCDIAVMNSMLNLYCKCDHVGDAKDLFDQMEQR 208
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSWN M++GYA G E+ LL M ++P+ + L+ + +++G+
Sbjct: 209 DMVSWNTMISGYASVGNMSEILKLLYRMR--GDGLRPDQQTFGASLSVSGTMCDLEMGRM 266
Query: 220 IHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H +++ +HL TA CG S V + +DVV W +IS +R G+
Sbjct: 267 LHCQIVKTGFDVDMHLKTALITMYLKCGKEEASYRVLETIPNKDVVCWTVMISGLMRLGR 326
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------WNA 317
AL + +++ + ++ I SV+ +C +L + G +V N+
Sbjct: 327 AEKALIVFSEMLQSGSDLSSEAIASVVASCAQLGSFDLGASVHGYVLRHGYTLDTPALNS 386
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
LI MY +CG + KS IF M ++LVSWN +IS Y
Sbjct: 387 LITMYAKCGHLDKSLVIFERMNERDLVSWNAIISGYA 423
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 150/326 (46%), Gaps = 49/326 (15%)
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G ++++++ F M+ + PD F P + KAC+ L+ G ++ ++ F
Sbjct: 25 GDHKQVLSTFSSMLANKLLPDTFTFPSLLKACASLQRLSFGLSIHQQVLVNGFS------ 78
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
DF +++SL++ YAK L + F +++++D+V
Sbjct: 79 ------------------------SDFYISSSLVNLYAKFGLLAHARKVFEEMRERDVVH 114
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI--SLSGVLAACAQVKGVKLGKAIH 221
W AM+ Y+ G E +L++EM P T+ LSGVL Q++ + I+
Sbjct: 115 WTAMIGCYSRAGIVGEACSLVNEMRFQGIKPGPVTLLEMLSGVL-EITQLQCLHDFAVIY 173
Query: 222 GY-----VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL 276
G+ V+ ++L C V + +F+Q+ RD+V WN++IS + G + + L LL
Sbjct: 174 GFDCDIAVMNSMLNLYCKCDHVGDAKDLFDQMEQRDMVSWNTMISGYASVGNMSEILKLL 233
Query: 277 RDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGSFV----WNALIDMYGRC 325
+ ++P+ T + L + L G + TG V ALI MY +C
Sbjct: 234 YRMRGDGLRPDQQTFGASLSVSGTMCDLEMGRMLHCQIVKTGFDVDMHLKTALITMYLKC 293
Query: 326 GAIQKSRKIFVLMPHKNLVSWNVMIS 351
G + S ++ +P+K++V W VMIS
Sbjct: 294 GKEEASYRVLETIPNKDVVCWTVMIS 319
Score = 102 bits (254), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 143/311 (45%), Gaps = 50/311 (16%)
Query: 14 CGVELCAFLGSQLLEVFCN-----WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVC 68
CG E ++ ++LE N WT M+ LG E+ + +F M+ G
Sbjct: 293 CGKEEASY---RVLETIPNKDVVCWTVMISGLMRLGRAEKALIVFSEMLQSGSDLSSEAI 349
Query: 69 PKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ 128
V +C++L + +G V+ Y++ + + P L
Sbjct: 350 ASVVASCAQLGSFDLGASVHGYVLRHGY----TLDTPAL--------------------- 384
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
NSLI YAKC +L S F ++ ++DLVSWNA+++GYA + L +EM+
Sbjct: 385 -----NSLITMYAKCGHLDKSLVIFERMNERDLVSWNAIISGYAQNVDLCKALLLFEEMK 439
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGF 237
+T Q ++ ++ +L AC+ + +GK IH V+R I + + CG+
Sbjct: 440 -FKTVQQVDSFTVVSLLQACSSAGALPVGKLIHCIVIRSFIRPCSLVDTALVDMYSKCGY 498
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ + F+ +S +DVV W +I+ + G+ AL++ + + + ++PN V ++VL +
Sbjct: 499 LEAAQRCFDSISWKDVVSWGILIAGYGFHGKGDIALEIYSEFLHSGMEPNHVIFLAVLSS 558
Query: 298 CLKLAALPQGL 308
C + QGL
Sbjct: 559 CSHNGMVQQGL 569
Score = 85.1 bits (209), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 91/185 (49%), Gaps = 19/185 (10%)
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGF 237
M+ + P+T + +L ACA ++ + G +IH Y+ ++L G
Sbjct: 37 MLANKLLPDTFTFPSLLKACASLQRLSFGLSIHQQVLVNGFSSDFYISSSLVNLYAKFGL 96
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ + VF ++ RDVV W ++I + R+G V +A L+ ++ +KP VT++ +L
Sbjct: 97 LAHARKVFEEMRERDVVHWTAMIGCYSRAGIVGEACSLVNEMRFQGIKPGPVTLLEMLSG 156
Query: 298 CLKLAALP--------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
L++ L G V N+++++Y +C + ++ +F M +++VSWN M
Sbjct: 157 VLEITQLQCLHDFAVIYGFDCDIAVMNSMLNLYCKCDHVGDAKDLFDQMEQRDMVSWNTM 216
Query: 350 ISVYG 354
IS Y
Sbjct: 217 ISGYA 221
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 8/108 (7%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
LV+ +L+D Y+KC YL+ + F I KD+VSW ++AGY G + + E +
Sbjct: 484 LVDTALVDMYSKCGYLEAAQRCFDSISWKDVVSWGILIAGYGFHGKGDIALEIYS--EFL 541
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR------HHIHLS 232
+ M+PN + VL++C+ V+ G I ++R +H HL+
Sbjct: 542 HSGMEPNHVIFLAVLSSCSHNGMVQQGLKIFSSMVRDFGVEPNHEHLA 589
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP---------- 305
+NS I+ G L ++ + P+T T S+L AC L L
Sbjct: 14 FNSHINHLSSHGDHKQVLSTFSSMLANKLLPDTFTFPSLLKACASLQRLSFGLSIHQQVL 73
Query: 306 -QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
G + ++ ++L+++Y + G + +RK+F M +++V W MI Y
Sbjct: 74 VNGFSSDFYISSSLVNLYAKFGLLAHARKVFEEMRERDVVHWTAMIGCY 122
>sp|Q7XJN6|PP197_ARATH Pentatricopeptide repeat-containing protein At2g40720
OS=Arabidopsis thaliana GN=PCMP-E26 PE=3 SV=1
Length = 860
Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 162/344 (47%), Gaps = 52/344 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y Y ++LF M K V PD F V CS L Y GK V+ +
Sbjct: 341 WNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELF 400
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ + ++ LL L+ KCG D D ++
Sbjct: 401 KRPIQSTSTIESALLTLYSKCG-----------CDPD-------------------AYLV 430
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F +++KD+V+W ++++G G +E + +M+ ++P++ ++ V ACA ++
Sbjct: 431 FKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLE 490
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ G +HG +++ I L + CG + VF +ST ++V WNS+IS
Sbjct: 491 ALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMIS 550
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGT 310
+ R+ ++DL ++ + P++V+I SVL A A+L + G+ +
Sbjct: 551 CYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPS 610
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + NALIDMY +CG + + IF M HK+L++WN+MI YG
Sbjct: 611 DTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYG 654
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/353 (23%), Positives = 159/353 (45%), Gaps = 59/353 (16%)
Query: 14 CGVELCAFLGSQLLEV--FCNWTSMMGMYNVLGYYEEIVNLFYLMIDK--GVRPDHFVCP 69
CG + A+L + +E W S++ G ++E + +F M D ++PD +
Sbjct: 421 CGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMT 480
Query: 70 KVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQD 129
V AC+ L+ R G V+ MI +L++F
Sbjct: 481 SVTNACAGLEALRFGLQVHGSMIKTGL---------VLNVF------------------- 512
Query: 130 FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
V +SLID Y+KC +++ F+ + +++V+WN+M++ Y+ E +L + M
Sbjct: 513 --VGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLM-- 568
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI----HLSTA-------CGFV 238
+ + P+++S++ VL A + + GK++HGY LR I HL A CGF
Sbjct: 569 LSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFS 628
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ ++F ++ + ++ WN +I + G + AL L ++ A P+ VT +S++ AC
Sbjct: 629 KYAENIFKKMQHKSLITWNLMIYGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISAC 688
Query: 299 LKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFVLMP 339
+ +G F+ + ++D+ GR G ++++ MP
Sbjct: 689 NHSGFVEEGKNIFEFMKQDYGIEPNMEHYANMVDLLGRAGLLEEAYSFIKAMP 741
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 150/343 (43%), Gaps = 55/343 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYR--VGKDVYDY 90
W SM+ Y ++E V F M+ GVRPD F V + ++R GK ++ +
Sbjct: 136 WNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGF 195
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
M+ + ++ +K L+D++ K G +F E++
Sbjct: 196 MLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIED---------------------- 233
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+ ++V WN M+ G+ G E +L M ++ + S +G L AC+Q
Sbjct: 234 -------KSNVVLWNVMIVGFGGSGICESSLDLY--MLAKNNSVKLVSTSFTGALGACSQ 284
Query: 211 VKGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ G+ IH V++ +H + + CG V + +VF+ + + + +WN++
Sbjct: 285 SENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAM 344
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------L 308
++A+ + ALDL + +V P++ T+ +V+ C L G +
Sbjct: 345 VAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPI 404
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ S + +AL+ +Y +CG + +F M K++V+W +IS
Sbjct: 405 QSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLIS 447
Score = 88.6 bits (218), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 137/315 (43%), Gaps = 52/315 (16%)
Query: 66 FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEE 125
F P + KACS L + GK ++ ++ + + + + L+++++KCG ++ +F+
Sbjct: 61 FTFPSLLKACSALTNLSYGKTIHGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDG 120
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGY-ALGGFREEVTNLL 184
Q S + +D+ WN+M+ GY F+E V
Sbjct: 121 WSQ-----------------------SQSGVSARDVTVWNSMIDGYFKFRRFKEGVGCF- 156
Query: 185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKL--GKAIHGYVLRHHIH----LSTAC--- 235
M+ ++P+ SLS V++ + + GK IHG++LR+ + L TA
Sbjct: 157 --RRMLVFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGFMLRNSLDTDSFLKTALIDM 214
Query: 236 ----GFVICSCSVFNQLSTR-DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
G I + VF ++ + +VV+WN +I F SG +LDL +VK + +
Sbjct: 215 YFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYMLAKNNSVKLVSTS 274
Query: 291 IVSVLPAC-----------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
L AC + + GL +V +L+ MY +CG + ++ +F +
Sbjct: 275 FTGALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVV 334
Query: 340 HKNLVSWNVMISVYG 354
K L WN M++ Y
Sbjct: 335 DKRLEIWNAMVAAYA 349
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 104/249 (41%), Gaps = 53/249 (21%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+ G+QVH +I G+ L F+GS L++++ W SM+
Sbjct: 492 LRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMISC 551
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y+ E ++LF LM+ +G+ PD V A S GK ++ Y + + +
Sbjct: 552 YSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPSD 611
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+K L+D+++KCG + K + F K++ K
Sbjct: 612 THLKNALIDMYVKCG------------------------------FSKYAENIFKKMQHK 641
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
L++WN M+ GY G +L DEM+ + P+ ++ +++AC V+ GK
Sbjct: 642 SLITWNLMIYGYGSHGDCITALSLFDEMK--KAGESPDDVTFLSLISACNHSGFVEEGKN 699
Query: 220 IHGYVLRHH 228
I ++ + +
Sbjct: 700 IFEFMKQDY 708
Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 32/190 (16%)
Query: 197 NTISLSGVLAACAQVKGVKLGKAIHGYVL----RHHIHLSTA-------CGFVICSCSVF 245
+ + +L AC+ + + GK IHG V+ R+ ++T+ CGF+ + VF
Sbjct: 59 SVFTFPSLLKACSALTNLSYGKTIHGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVF 118
Query: 246 N-------QLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ +S RDV VWNS+I + + + + + R ++V V+P+ ++ V+
Sbjct: 119 DGWSQSQSGVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVM 178
Query: 299 LKLA-------------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLV 344
K L L T SF+ ALIDMY + G + ++FV + K N+V
Sbjct: 179 CKEGNFRREEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVV 238
Query: 345 SWNVMISVYG 354
WNVMI +G
Sbjct: 239 LWNVMIVGFG 248
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/405 (23%), Positives = 191/405 (47%), Gaps = 55/405 (13%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
M G+QVH+ + ++GS L++++ +W S++
Sbjct: 168 MNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITC 227
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI-SIKFEG 98
+ G E +++F +M++ V PD V AC+ L +VG++V+ ++ + K
Sbjct: 228 FEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRN 287
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
+ + +D++ KC R++ +F+ M ++ + S+I YA K + F+K+
Sbjct: 288 DIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMA 347
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
++++VSWNA++AGY G EE +L ++ + + P S + +L ACA + + LG
Sbjct: 348 ERNVVSWNALIAGYTQNGENEEALSLFCLLK--RESVCPTHYSFANILKACADLAELHLG 405
Query: 218 KAIHGYVLRHH-----------------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
H +VL+H I + CG V VF ++ RD V WN++I
Sbjct: 406 MQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMI 465
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
F ++G +AL+L R+++ + KP+ +T++ VL AC + +G S +
Sbjct: 466 IGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGV 525
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ ++D+ GR G +++++ + MP + V W +++
Sbjct: 526 APLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAA 570
Score = 128 bits (321), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 147/292 (50%), Gaps = 26/292 (8%)
Query: 87 VYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRY 145
V+ +I F ++ L+D + KCG +E +F++M Q + NS++ K +
Sbjct: 42 VHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGF 101
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
L + F + ++D +WN+M++G+A EE M + N S + VL
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMH--KEGFVLNEYSFASVL 159
Query: 206 AACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVV 254
+AC+ + + G +H Y+ + + + CG V + VF+++ R+VV
Sbjct: 160 SACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVV 219
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------- 307
WNS+I+ F ++G V+ALD+ + ++ + V+P+ VT+ SV+ AC L+A+ G
Sbjct: 220 SWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRV 279
Query: 308 -----LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L + NA +DMY +C I+++R IF MP +N+++ MIS Y
Sbjct: 280 VKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYA 331
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/380 (23%), Positives = 163/380 (42%), Gaps = 92/380 (24%)
Query: 31 CNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
C W SM+ + EE + F +M +G + + V ACS L D G V+
Sbjct: 118 CTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSL 177
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ F + + L+D++ KCG + +F+EM
Sbjct: 178 IAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMG----------------------- 214
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
+++VSWN+++ + G E ++ M+++ ++P+ ++L+ V++ACA
Sbjct: 215 -------DRNVVSWNSLITCFEQNGPAVEALDVF--QMMLESRVEPDEVTLASVISACAS 265
Query: 211 VKGVKLGKAIHGYV-----LRHHIHLSTACGFVICSCS---------------------- 243
+ +K+G+ +HG V LR+ I LS A + CS
Sbjct: 266 LSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETS 325
Query: 244 ----------------VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
+F +++ R+VV WN++I+ + ++G+ +AL L + +V P
Sbjct: 326 MISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPT 385
Query: 288 TVTIVSVLPACLKLAALPQGL-------------GTGS----FVWNALIDMYGRCGAIQK 330
+ ++L AC LA L G+ +G FV N+LIDMY +CG +++
Sbjct: 386 HYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEE 445
Query: 331 SRKIFVLMPHKNLVSWNVMI 350
+F M ++ VSWN MI
Sbjct: 446 GYLVFRKMMERDCVSWNAMI 465
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 82/195 (42%), Gaps = 42/195 (21%)
Query: 201 LSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
LS + +K G + ++ I + CG + VF+++ R++ WNS++
Sbjct: 34 LSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVV 93
Query: 261 SAFVRSGQVVDALDLLRDV----------IVANVKP---------------------NTV 289
+ + G + +A L R + +V+ N
Sbjct: 94 TGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEY 153
Query: 290 TIVSVLPACLKLAALPQGLGTGS-----------FVWNALIDMYGRCGAIQKSRKIFVLM 338
+ SVL AC L + +G+ S ++ +AL+DMY +CG + ++++F M
Sbjct: 154 SFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEM 213
Query: 339 PHKNLVSWNVMISVY 353
+N+VSWN +I+ +
Sbjct: 214 GDRNVVSWNSLITCF 228
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 113/257 (43%), Gaps = 54/257 (21%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ Y G EE ++LF L+ + V P H+ + KAC++L + +G + ++
Sbjct: 353 SWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHV 412
Query: 92 ISIKF------EGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCR 144
+ F E + V L+D+++KCG +E +F +M ++D + N++I +A+
Sbjct: 413 LKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNG 472
Query: 145 YLK------------------------VSHCKFSKIKQKDLVSWNAMLAGYALG------ 174
Y +S C + ++ +++M + +
Sbjct: 473 YGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHY 532
Query: 175 ----------GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224
GF EE ++++EM M QP+++ +LAAC + + LGK + +
Sbjct: 533 TCMVDLLGRAGFLEEAKSMIEEMPM-----QPDSVIWGSLLAACKVHRNITLGKYVAEKL 587
Query: 225 LRHHIHLSTACGFVICS 241
L + S + +V+ S
Sbjct: 588 LE--VEPSNSGPYVLLS 602
>sp|O49619|PP350_ARATH Pentatricopeptide repeat-containing protein At4g35130,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=3
SV=1
Length = 804
Score = 141 bits (356), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 162/343 (47%), Gaps = 56/343 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W M+ + G Y E V + M+ GV+ D F P V K+ + + GK ++ +I
Sbjct: 98 WNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAGISSLEEGKKIHAMVI 157
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ F + V L+ L++K G +FEEM
Sbjct: 158 KLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEM-------------------------- 191
Query: 153 FSKIKQKDLVSWNAMLAGY-ALG-GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
++D+VSWN+M++GY ALG GF ++L+ EM++ +P+ S L AC+
Sbjct: 192 ----PERDIVSWNSMISGYLALGDGF----SSLMLFKEMLKCGFKPDRFSTMSALGACSH 243
Query: 211 VKGVKLGKAIHGYVLRHHIH------------LSTACGFVICSCSVFNQLSTRDVVVWNS 258
V K+GK IH + +R I + + G V + +FN + R++V WN
Sbjct: 244 VYSPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNV 303
Query: 259 IISAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPACLKLA-------ALPQGLGT 310
+I + R+G+V DA + + N ++P+ +T +++LPA L A+ +G
Sbjct: 304 MIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASAILEGRTIHGYAMRRGFLP 363
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ ALIDMYG CG ++ + IF M KN++SWN +I+ Y
Sbjct: 364 HMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAY 406
Score = 139 bits (350), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 109/399 (27%), Positives = 196/399 (49%), Gaps = 81/399 (20%)
Query: 1 MELGIQVHAHLIVCG----VELCAFLGSQLLEVFC-----------------NWTSMMGM 39
+E G ++HA +I G V +C L S +++ C +W SM+
Sbjct: 146 LEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISG 205
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y LG + LF M+ G +PD F ACS + ++GK+++ + +
Sbjct: 206 YLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAV------- 258
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK--FSKIK 157
R I +G D +V S++D Y+K Y +VS+ + F+ +
Sbjct: 259 ---------------RSRIETG-------DVMVMTSILDMYSK--YGEVSYAERIFNGMI 294
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
Q+++V+WN M+ YA G + +M Q +QP+ I+ +L A A ++G
Sbjct: 295 QRNIVAWNVMIGCYARNGRVTDAFLCFQKMSE-QNGLQPDVITSINLLPASAILEG---- 349
Query: 218 KAIHGYVLRH----HIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
+ IHGY +R H+ L TA CG + + +F++++ ++V+ WNSII+A+V++
Sbjct: 350 RTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQN 409
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----W------ 315
G+ AL+L +++ +++ P++ TI S+LPA + +L +G +++ W
Sbjct: 410 GKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIIL 469
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
N+L+ MY CG ++ +RK F + K++VSWN +I Y
Sbjct: 470 NSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYA 508
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 109/232 (46%), Gaps = 25/232 (10%)
Query: 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190
++ +LID Y +C LK + F ++ +K+++SWN+++A Y G L E+
Sbjct: 366 VLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQEL--W 423
Query: 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVI 239
+ + P++ +++ +L A A+ + G+ IH Y+++ +H+ CG +
Sbjct: 424 DSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLE 483
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC- 298
+ FN + +DVV WNSII A+ G ++ L ++I + V PN T S+L AC
Sbjct: 484 DARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACS 543
Query: 299 -----------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
+ G+ G + ++D+ GR G +++ MP
Sbjct: 544 ISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEEMP 595
>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300
OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
Length = 857
Score = 141 bits (355), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 98/401 (24%), Positives = 177/401 (44%), Gaps = 83/401 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++LG+Q+H ++V GV+ + + LL ++ W M+
Sbjct: 255 IDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISG 314
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G EE + FY MI GV PD + + S+ ++ K ++ Y++
Sbjct: 315 YVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMR------ 368
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
+ D + ++LID Y KCR + ++ FS+
Sbjct: 369 ------------------------HSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSV 404
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEM----IQTDMQPNTISLSGVLAACAQVKGVK 215
D+V + AM++GY G +D +EM ++ + PN I+L +L + +K
Sbjct: 405 DVVVFTAMISGYLHNGL------YIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALK 458
Query: 216 LGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
LG+ +HG++++ I + CG + + +F +LS RD+V WNS+I+
Sbjct: 459 LGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCA 518
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLGTGSF 313
+S A+D+ R + V+ + + V+I + L AC L + + L + +
Sbjct: 519 QSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVY 578
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ LIDMY +CG ++ + +F M KN+VSWN +I+ G
Sbjct: 579 SESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACG 619
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 144/275 (52%), Gaps = 28/275 (10%)
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
+ C + L+DL ++ + + SG+ D + + NSL+ Y+KC + F + +
Sbjct: 247 SVCASKLLIDLGVQLHGLVVVSGV----DFEGSIKNSLLSMYSKCGRFDDASKLFRMMSR 302
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
D V+WN M++GY G EE EMI + + P+ I+ S +L + ++ + ++ K
Sbjct: 303 ADTVTWNCMISGYVQSGLMEESLTFF--YEMISSGVLPDAITFSSLLPSVSKFENLEYCK 360
Query: 219 AIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
IH Y++RH I L C V + ++F+Q ++ DVVV+ ++IS ++ +G
Sbjct: 361 QIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNG 420
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN----------- 316
+D+L++ R ++ + PN +T+VS+LP L AL G F+
Sbjct: 421 LYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGC 480
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
A+IDMY +CG + + +IF + +++VSWN MI+
Sbjct: 481 AVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMIT 515
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/398 (24%), Positives = 167/398 (41%), Gaps = 77/398 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC-----------------------NWTSMM 37
+ G QVHA LIV + ++ ++L ++ W S++
Sbjct: 51 LRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSII 110
Query: 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
+ G + + ++ M+ GV PD P + KAC LK+++ + D + S+ +
Sbjct: 111 SSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMD 170
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
N V L+ +++ G++++ S LF+ ++
Sbjct: 171 CNEFVASSLIKAYLEYGKIDVPSKLFD------------------------------RVL 200
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
QKD V WN ML GYA G + V M M Q + PN ++ VL+ CA + LG
Sbjct: 201 QKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQ--ISPNAVTFDCVLSVCASKLLIDLG 258
Query: 218 KAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
+HG V+ + + CG + +F +S D V WN +IS +V+S
Sbjct: 259 VQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQS 318
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVW 315
G + ++L ++I + V P+ +T S+LP+ K L + F+
Sbjct: 319 GLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLT 378
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ALID Y +C + ++ IF ++V + MIS Y
Sbjct: 379 SALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGY 416
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/384 (20%), Positives = 173/384 (45%), Gaps = 77/384 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF---------------CN------WTSMMGM 39
+E Q+H +++ + L FL S L++ + CN +T+M+
Sbjct: 356 LEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISG 415
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G Y + + +F ++ + P+ + L ++G++++ ++I F+ N
Sbjct: 416 YLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFD-N 474
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
C I C ++ID YAKC + +++ F ++ ++
Sbjct: 475 RCN--------IGC---------------------AVIDMYAKCGRMNLAYEIFERLSKR 505
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D+VSWN+M+ A ++ +M + + + + +S+S L+ACA + GKA
Sbjct: 506 DIVSWNSMITRCAQSDNPSAAIDIFRQMGV--SGICYDCVSISAALSACANLPSESFGKA 563
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
IHG++++H I + CG + + +VF + +++V WNSII+A G+
Sbjct: 564 IHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGK 623
Query: 269 VVDALDLLRDVI-VANVKPNTVTIVSVLPACLKLAALPQ------------GLGTGSFVW 315
+ D+L L +++ + ++P+ +T + ++ +C + + + G+ +
Sbjct: 624 LKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHY 683
Query: 316 NALIDMYGRCGAIQKSRKIFVLMP 339
++D++GR G + ++ + MP
Sbjct: 684 ACVVDLFGRAGRLTEAYETVKSMP 707
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 24/178 (13%)
Query: 201 LSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVFNQLS 249
LS +L AC+ ++ GK +H +++ + I + CG +F +L
Sbjct: 38 LSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLD 97
Query: 250 TR--DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ- 306
R + WNSIIS+FVR+G + AL ++ V P+ T ++ AC+ L
Sbjct: 98 LRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGI 157
Query: 307 ----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
G+ FV ++LI Y G I K+F + K+ V WNVM++ Y
Sbjct: 158 DFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYA 215
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 164/332 (49%), Gaps = 26/332 (7%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W ++ Y +G E+ + ++ LM +GV+PD + +CS L D GK+ Y+Y+
Sbjct: 224 SWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYV 283
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSH 150
+ L+D+F KCG + +F+ +++ +V+ ++I YA+C L VS
Sbjct: 284 KENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSR 343
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F +++KD+V WNAM+ G ++ L EM+ T +P+ I++ L+AC+Q
Sbjct: 344 KLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNT--KPDEITMIHCLSACSQ 401
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ + +G IH Y+ ++ + L+ A CG + + SVF+ + TR+ + + +I
Sbjct: 402 LGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAI 461
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----- 314
I G A+ ++I A + P+ +T + +L AC + G S +
Sbjct: 462 IGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFN 521
Query: 315 -------WNALIDMYGRCGAIQKSRKIFVLMP 339
++ ++D+ GR G ++++ ++ MP
Sbjct: 522 LNPQLKHYSIMVDLLGRAGLLEEADRLMESMP 553
Score = 111 bits (278), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 96/425 (22%), Positives = 180/425 (42%), Gaps = 113/425 (26%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCNWTS----------MMGMYN---------VLGYY 46
Q+ A +I+ G+ L F S+L+ FC + + G+ N + G+
Sbjct: 71 QIQAQMIINGLILDPFASSRLI-AFCALSESRYLDYSVKILKGIENPNIFSWNVTIRGFS 129
Query: 47 E-----EIVNLFYLMIDKG---VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
E E L+ M+ G RPDHF P ++K C++L+ +G + +++ ++ E
Sbjct: 130 ESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLEL 189
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
+ V + +F CG ME + F +
Sbjct: 190 VSHVHNASIHMFASCGDMENARKV------------------------------FDESPV 219
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+DLVSWN ++ GY G E+ + ME ++P+ +++ G++++C+ + + GK
Sbjct: 220 RDLVSWNCLINGYKKIGEAEKAIYVYKLME--SEGVKPDDVTMIGLVSSCSMLGDLNRGK 277
Query: 219 AIHGYV----LRHHIHLSTA--------------------------------------CG 236
+ YV LR I L A CG
Sbjct: 278 EFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCG 337
Query: 237 FVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296
+ S +F+ + +DVV+WN++I V++ + DAL L +++ +N KP+ +T++ L
Sbjct: 338 LLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLS 397
Query: 297 ACLKLAALPQGLGTGSFV-----------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
AC +L AL G+ ++ +L+DMY +CG I ++ +F + +N ++
Sbjct: 398 ACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLT 457
Query: 346 WNVMI 350
+ +I
Sbjct: 458 YTAII 462
Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 134/284 (47%), Gaps = 38/284 (13%)
Query: 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYA-----------KCRYLKVSHCKF 153
PLL L KC + +++ ++N ++D +A + RYL S
Sbjct: 55 PLLSLLEKCKLLL----HLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKIL 110
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM-EMIQTDMQPNTISLSGVLAACAQVK 212
I+ ++ SWN + G++ +E L +M + +P+ + + CA ++
Sbjct: 111 KGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLR 170
Query: 213 GVKLGKAIHGYVLR---------HH--IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
LG I G+VL+ H+ IH+ +CG + + VF++ RD+V WN +I+
Sbjct: 171 LSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLIN 230
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW------ 315
+ + G+ A+ + + + VKP+ VT++ ++ +C L L +G +V
Sbjct: 231 GYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRM 290
Query: 316 -----NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
NAL+DM+ +CG I ++R+IF + + +VSW MIS Y
Sbjct: 291 TIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYA 334
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 24/149 (16%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+++GI +H ++ + L LG+ L++++ +T+++G
Sbjct: 405 LDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGG 464
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+ G ++ F MID G+ PD + AC + G+D + M S +F N
Sbjct: 465 LALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKS-RFNLN 523
Query: 100 ACVKR--PLLDLFIKCGRMEITSGLFEEM 126
+K ++DL + G +E L E M
Sbjct: 524 PQLKHYSIMVDLLGRAGLLEEADRLMESM 552
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/383 (24%), Positives = 185/383 (48%), Gaps = 50/383 (13%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCN----------------------WTSMMGMYNVL 43
+++A +I+ G+ +F+ +++++ FC+ + S++ Y
Sbjct: 28 KINASIIIHGLSQSSFMVTKMVD-FCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHN 86
Query: 44 GYYEEIVNLFYLMIDKGVR-PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
Y +++ ++ ++ K PD F P ++K+C+ L +GK V+ ++ +
Sbjct: 87 SLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVT 146
Query: 103 KRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ L+D+++K + +F+EM ++D + NSL+ YA+ +K + F + K +
Sbjct: 147 ENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTI 206
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
VSW AM++GY G E + EM++ ++P+ ISL VL +CAQ+ ++LGK IH
Sbjct: 207 VSWTAMISGYTGIGCYVEAMDFFREMQL--AGIEPDEISLISVLPSCAQLGSLELGKWIH 264
Query: 222 GYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y R I + + CG + + +F Q+ +DV+ W+++IS + G
Sbjct: 265 LYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAH 324
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNAL 318
A++ ++ A VKPN +T + +L AC + +GL + + L
Sbjct: 325 GAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCL 384
Query: 319 IDMYGRCGAIQKSRKIFVLMPHK 341
ID+ R G ++++ +I MP K
Sbjct: 385 IDVLARAGKLERAVEITKTMPMK 407
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 132/282 (46%), Gaps = 54/282 (19%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
+ Q + ++DF K + + F+++ ++ +N+++ Y +V +
Sbjct: 38 LSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYK 97
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH--HIHLSTACGFV----- 238
++ ++ P+ + + +CA + LGK +HG++ + H+ T +
Sbjct: 98 QLLRKSFEL-PDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMK 156
Query: 239 ----ICSCSVFNQLSTRDVVVWNSIISAFVRSGQV------------------------- 269
+ + VF+++ RDV+ WNS++S + R GQ+
Sbjct: 157 FDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGY 216
Query: 270 ------VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGS 312
V+A+D R++ +A ++P+ ++++SVLP+C +L +L +G +
Sbjct: 217 TGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQT 276
Query: 313 FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V NALI+MY +CG I ++ ++F M K+++SW+ MIS Y
Sbjct: 277 GVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYA 318
>sp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=3
SV=1
Length = 689
Score = 139 bits (349), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 160/342 (46%), Gaps = 54/342 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W M+ Y + E+V L+ L++ G R D V K KAC+EL+D GK ++ +
Sbjct: 110 WKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIHCQL- 168
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
VK P D + G L+D YAKC +K +H
Sbjct: 169 ---------VKVPSFDNVVLTG---------------------LLDMYAKCGEIKSAHKV 198
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F+ I +++V W +M+AGY EE L + M + ++ N + ++ AC ++
Sbjct: 199 FNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMR--ENNVLGNEYTYGTLIMACTKLS 256
Query: 213 GVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ GK HG +++ I LS+ CG + + VFN+ S D+V+W ++I
Sbjct: 257 ALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIV 316
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----LKLAALPQGLGTGSFVW- 315
+ +G V +AL L + + +KPN VTI SVL C L+L GL +W
Sbjct: 317 GYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIWD 376
Query: 316 ----NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
NAL+ MY +C + ++ +F + K++V+WN +IS +
Sbjct: 377 TNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGF 418
Score = 137 bits (344), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/352 (27%), Positives = 160/352 (45%), Gaps = 56/352 (15%)
Query: 26 LLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGK 85
L V C WTSM+ Y EE + LF M + V + + + AC++L GK
Sbjct: 204 LRNVVC-WTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGK 262
Query: 86 DVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRY 145
+ ++ E ++C+ SL+D Y KC
Sbjct: 263 WFHGCLVKSGIELSSCLV------------------------------TSLLDMYVKCGD 292
Query: 146 LKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205
+ + F++ DLV W AM+ GY G E +L +M+ ++ ++PN ++++ VL
Sbjct: 293 ISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVE--IKPNCVTIASVL 350
Query: 206 AACAQVKGVKLGKAIHGYVLRHHI----------HLSTACGFVICSCSVFNQLSTRDVVV 255
+ C ++ ++LG+++HG ++ I H+ C + VF S +D+V
Sbjct: 351 SGCGLIENLELGRSVHGLSIKVGIWDTNVANALVHMYAKCYQNRDAKYVFEMESEKDIVA 410
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-- 313
WNSIIS F ++G + +AL L + +V PN VT+ S+ AC L +L G ++
Sbjct: 411 WNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSV 470
Query: 314 -----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
V AL+D Y +CG Q +R IF + KN ++W+ MI YG
Sbjct: 471 KLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTITWSAMIGGYG 522
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/382 (20%), Positives = 160/382 (41%), Gaps = 79/382 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNV 42
G H L+ G+EL + L + LL+++ WT+M+ Y
Sbjct: 261 GKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTH 320
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G E ++LF M ++P+ V C +++ +G+ V+ I +
Sbjct: 321 NGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKV-------- 372
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
G++ D V N+L+ YAKC + + F +KD+V
Sbjct: 373 ------------------GIW-----DTNVANALVHMYAKCYQNRDAKYVFEMESEKDIV 409
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
+WN++++G++ G E L M + PN ++++ + +ACA + + +G ++H
Sbjct: 410 AWNSIISGFSQNGSIHEALFLFHRMN--SESVTPNGVTVASLFSACASLGSLAVGSSLHA 467
Query: 223 YVLR------HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
Y ++ +H+ TA CG + +F+ + ++ + W+++I + + G
Sbjct: 468 YSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTITWSAMIGGYGKQGDT 527
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNA 317
+ +L+L +++ KPN T S+L AC + +G + +
Sbjct: 528 IGSLELFEEMLKKQQKPNESTFTSILSACGHTGMVNEGKKYFSSMYKDYNFTPSTKHYTC 587
Query: 318 LIDMYGRCGAIQKSRKIFVLMP 339
++DM R G ++++ I MP
Sbjct: 588 MVDMLARAGELEQALDIIEKMP 609
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 112/246 (45%), Gaps = 23/246 (9%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D + L+ Y Y K + F +I + D W ML Y L EV L D +
Sbjct: 75 DISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLL- 133
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH----------GYVLRHHIHLSTACGFV 238
++ + + I S L AC +++ + GK IH VL + + CG +
Sbjct: 134 -MKHGFRYDDIVFSKALKACTELQDLDNGKKIHCQLVKVPSFDNVVLTGLLDMYAKCGEI 192
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ VFN ++ R+VV W S+I+ +V++ + L L + NV N T +++ AC
Sbjct: 193 KSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMAC 252
Query: 299 LKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWN 347
KL+AL QG + S + +L+DMY +CG I +R++F H +LV W
Sbjct: 253 TKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWT 312
Query: 348 VMISVY 353
MI Y
Sbjct: 313 AMIVGY 318
>sp|Q9SS97|PP205_ARATH Putative pentatricopeptide repeat-containing protein At3g01580
OS=Arabidopsis thaliana GN=PCMP-E87 PE=3 SV=2
Length = 660
Score = 138 bits (347), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 84/342 (24%), Positives = 166/342 (48%), Gaps = 52/342 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +++ + +EE++ F M +PD+F P KAC EL++ G+ ++ ++
Sbjct: 27 QWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYGEMIHGFV 86
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ ++T G D V +SLI Y KC + +
Sbjct: 87 -----------------------KKDVTLG------SDLYVGSSLIYMYIKCGRMIEALR 117
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++++ D+V+W++M++G+ G + M M +D+ P+ ++L +++AC ++
Sbjct: 118 MFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVM-ASDVTPDRVTLITLVSACTKL 176
Query: 212 KGVKLGKAIHGYVLRHHIH--LSTACGFVIC---------SCSVFNQLSTRDVVVWNSII 260
+LG+ +HG+V+R LS + C + ++F ++ +DV+ W+++I
Sbjct: 177 SNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVI 236
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF------- 313
+ +V++G +AL + D++ +PN T++ VL AC L QG T
Sbjct: 237 ACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLE 296
Query: 314 ----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
V AL+DMY +C + +++ +F +P K++VSW +IS
Sbjct: 297 TEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALIS 338
Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 88/347 (25%), Positives = 158/347 (45%), Gaps = 56/347 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
W+SM+ + G + V F M+ V PD + AC++L + R+G+ V+ +
Sbjct: 129 TWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGF 188
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+I F D + NSL++ YAK R K +
Sbjct: 189 VIRRGF------------------------------SNDLSLVNSLLNCYAKSRAFKEAV 218
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F I +KD++SW+ ++A Y G E LL +M+ +PN ++ VL ACA
Sbjct: 219 NLFKMIAEKDVISWSTVIACYVQNGAAAEA--LLVFNDMMDDGTEPNVATVLCVLQACAA 276
Query: 211 VKGVKLGKAIHGYVLRH----HIHLSTACGFVICSC-------SVFNQLSTRDVVVWNSI 259
++ G+ H +R + +STA + C +VF+++ +DVV W ++
Sbjct: 277 AHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVAL 336
Query: 260 ISAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPACLKLAALPQ-----------G 307
IS F +G +++ +++ N +P+ + +V VL +C +L L Q G
Sbjct: 337 ISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYG 396
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ F+ +L+++Y RCG++ + K+F + K+ V W +I+ YG
Sbjct: 397 FDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGYG 443
Score = 115 bits (287), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 153/332 (46%), Gaps = 55/332 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W++++ Y G E + +F M+D G P+ V +AC+ D G+ ++
Sbjct: 231 SWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHE-- 288
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ I GL E+ V+ +L+D Y KC + ++
Sbjct: 289 ------------------------LAIRKGLETEVK----VSTALVDMYMKCFSPEEAYA 320
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS+I +KD+VSW A+++G+ L G M +++ + +P+ I + VL +C+++
Sbjct: 321 VFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIM-LLENNTRPDAILMVKVLGSCSEL 379
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
++ K H YV+++ + L + CG + + VFN ++ +D VVW S+I
Sbjct: 380 GFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLI 439
Query: 261 SAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN--- 316
+ + G+ AL+ ++ ++ VKPN VT +S+L AC + +GL + N
Sbjct: 440 TGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVNDYR 499
Query: 317 ---------ALIDMYGRCGAIQKSRKIFVLMP 339
L+D+ GR G + + +I MP
Sbjct: 500 LAPNLEHYAVLVDLLGRVGDLDTAIEITKRMP 531
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 118/225 (52%), Gaps = 26/225 (11%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ ++ L WN +L + EEV L M + + +P+ +L L AC +++
Sbjct: 17 FGEMTKRSLYQWNTLLKSLSREKQWEEV--LYHFSHMFRDEEKPDNFTLPVALKACGELR 74
Query: 213 GVKLGKAIHGYVLR------------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
V G+ IHG+V + I++ CG +I + +F++L D+V W+S++
Sbjct: 75 EVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMV 134
Query: 261 SAFVRSGQVVDALDLLRDVIVA-NVKPNTVTIVSVLPACLKLA-----------ALPQGL 308
S F ++G A++ R +++A +V P+ VT+++++ AC KL+ + +G
Sbjct: 135 SGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGF 194
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ N+L++ Y + A +++ +F ++ K+++SW+ +I+ Y
Sbjct: 195 SNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACY 239
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 12/120 (10%)
Query: 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303
+F +++ R + WN+++ + R Q + L + KP+ T+ L AC +L
Sbjct: 16 MFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELRE 75
Query: 304 LPQG------------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ G LG+ +V ++LI MY +CG + ++ ++F + ++V+W+ M+S
Sbjct: 76 VNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVS 135
>sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2
SV=1
Length = 866
Score = 138 bits (347), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 162/347 (46%), Gaps = 63/347 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W ++G Y GY++E + L++ M+ GV+PD + P V + C + D GK+V+ +
Sbjct: 162 SWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVH 221
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
++ +E D V N+LI Y KC +K +
Sbjct: 222 VVRYGYE------------------------------LDIDVVNALITMYVKCGDVKSAR 251
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ ++D++SWNAM++GY G E L M + D P+ ++L+ V++AC
Sbjct: 252 LLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVD--PDLMTLTSVISACEL 309
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVICSC---------------SVFNQLSTRDVVV 255
+ +LG+ IH YV I A +C+ +F+++ +D+V
Sbjct: 310 LGDRRLGRDIHAYV----ITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVS 365
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-- 313
W ++IS + + A+D R + +VKP+ +T+ +VL AC L L G+
Sbjct: 366 WTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAI 425
Query: 314 ---------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
V N LI+MY +C I K+ IF +P KN++SW +I+
Sbjct: 426 KARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIA 472
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/393 (24%), Positives = 174/393 (44%), Gaps = 77/393 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G +VH H++ G EL + + L+ ++ +W +M+ Y
Sbjct: 215 GKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFE 274
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
G E + LF+ M V PD V AC L D R+G+D++ Y+I+ F
Sbjct: 275 NGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFA----- 329
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
D V NSL Y + + FS++++KD+V
Sbjct: 330 -------------------------VDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIV 364
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW M++GY ++ + M+ Q ++P+ I+++ VL+ACA + + G +H
Sbjct: 365 SWTTMISGYEYNFLPDKAIDTYRMMD--QDSVKPDEITVAAVLSACATLGDLDTGVELHK 422
Query: 223 YVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
++ I++ + C + + +F+ + ++V+ W SII+ + + +
Sbjct: 423 LAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFE 482
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWNALID 320
AL LR + + ++PN +T+ + L AC ++ AL G+G F+ NAL+D
Sbjct: 483 ALIFLRQMKMT-LQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLD 541
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
MY RCG + + F K++ SWN++++ Y
Sbjct: 542 MYVRCGRMNTAWSQFN-SQKKDVTSWNILLTGY 573
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 109/223 (48%), Gaps = 23/223 (10%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F K+ +++L SWN ++ GYA G+ +E L M + ++P+ + VL C +
Sbjct: 152 FGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWV-GGVKPDVYTFPCVLRTCGGIP 210
Query: 213 GVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ GK +H +V+R+ L CG V + +F+++ RD++ WN++IS
Sbjct: 211 DLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMIS 270
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGT 310
+ +G + L+L + +V P+ +T+ SV+ AC L + G
Sbjct: 271 GYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAV 330
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V N+L MY G+ +++ K+F M K++VSW MIS Y
Sbjct: 331 DISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGY 373
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 20/153 (13%)
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
GV+LG A +R G ++ + VF ++S R++ WN ++ + + G +A
Sbjct: 128 GVELGNAFLAMFVRF--------GNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEA 179
Query: 273 LDLL-RDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW-----------NALID 320
+ L R + V VKP+ T VL C + L +G V NALI
Sbjct: 180 MCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALIT 239
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
MY +CG ++ +R +F MP ++++SWN MIS Y
Sbjct: 240 MYVKCGDVKSARLLFDRMPRRDIISWNAMISGY 272
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 137 bits (346), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 89/341 (26%), Positives = 168/341 (49%), Gaps = 42/341 (12%)
Query: 50 VNLFY-LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLD 108
+ LFY +M D+ V P+ F P V KAC++ + GK ++ + F G+ V L+
Sbjct: 112 ITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVR 171
Query: 109 LFIKCGRMEITSGLF---------------EEMDQDFLVNNSLIDFYAKCRYLKVSHCKF 153
+++ CG M+ LF + D + ++ N +ID Y + K + F
Sbjct: 172 MYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLF 231
Query: 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG 213
K++Q+ +VSWN M++GY+L GF ++ + EM+ + D++PN ++L VL A +++
Sbjct: 232 DKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMK--KGDIRPNYVTLVSVLPAISRLGS 289
Query: 214 VKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISA 262
++LG+ +H Y I + + CG + + VF +L +V+ W+++I+
Sbjct: 290 LELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMING 349
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-------- 314
F GQ DA+D + A V+P+ V +++L AC + +G S +
Sbjct: 350 FAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEP 409
Query: 315 ----WNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMI 350
+ ++D+ GR G + ++ + + MP K + V W ++
Sbjct: 410 RIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALL 450
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 145/318 (45%), Gaps = 83/318 (26%)
Query: 109 LFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKC----RYLKVSHCKFSKIKQKDLVSW 164
+FIK G+M +D L ++ F A R L +H F+++ Q++ SW
Sbjct: 45 VFIKSGQM-----------RDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSW 93
Query: 165 NAMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNTISLSGVLAACAQVKGVKLGKAIHG- 222
N ++ G++ + + + EM+ + ++PN + VL ACA+ ++ GK IHG
Sbjct: 94 NTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGL 153
Query: 223 ----------YVLRHHIHLSTACGFV---------------------------------- 238
+V+ + + + CGF+
Sbjct: 154 ALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNV 213
Query: 239 -------ICSCS----VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
+ C +F+++ R VV WN++IS + +G DA+++ R++ +++PN
Sbjct: 214 MIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPN 273
Query: 288 TVTIVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRKIFV 336
VT+VSVLPA +L +L G+ + +ALIDMY +CG I+K+ +F
Sbjct: 274 YVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFE 333
Query: 337 LMPHKNLVSWNVMISVYG 354
+P +N+++W+ MI+ +
Sbjct: 334 RLPRENVITWSAMINGFA 351
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/290 (19%), Positives = 124/290 (42%), Gaps = 58/290 (20%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y++ G++++ V +F M +RP++ V A S L +G+ ++ Y
Sbjct: 241 SWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYA 300
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + L+D++ KCG +E +FE
Sbjct: 301 EDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFE--------------------------- 333
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
++ ++++++W+AM+ G+A+ G + + +M Q ++P+ ++ +L AC+
Sbjct: 334 ---RLPRENVITWSAMINGFAIHGQAGDAIDCF--CKMRQAGVRPSDVAYINLLTACSHG 388
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
V+ G+ R+ + + G L R + + ++ RSG + +
Sbjct: 389 GLVEEGR-------RYFSQMVSVDG-----------LEPR-IEHYGCMVDLLGRSGLLDE 429
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDM 321
A + ++ +KP+ V ++L AC + + G V N L+DM
Sbjct: 430 AEEF---ILNMPIKPDDVIWKALLGAC----RMQGNVEMGKRVANILMDM 472
Score = 35.0 bits (79), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 86/222 (38%), Gaps = 64/222 (28%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ELG +H + G+ + LGS L++++ W++M+
Sbjct: 290 LELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMING 349
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI----- 94
+ + G + ++ F M GVRP + ACS G+ + M+S+
Sbjct: 350 FAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEP 409
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFS 154
+ E C ++DL GR SGL +E ++F++N +
Sbjct: 410 RIEHYGC----MVDLL---GR----SGLLDEA-EEFILNMPI------------------ 439
Query: 155 KIKQKDLVSWNAMLAGYALGGFRE---EVTNLLDEMEMIQTD 193
+ D V W A+L + G E V N+L M+M+ D
Sbjct: 440 ---KPDDVIWKALLGACRMQGNVEMGKRVANIL--MDMVPHD 476
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 160/347 (46%), Gaps = 58/347 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ Y+ G + + M ++ ++P V A S L+ VGK+++ Y
Sbjct: 203 SWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYA 262
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN--NSLIDFYAKCRYLKVS 149
+ F D LVN +L+D YAKC L+ +
Sbjct: 263 MRSGF--------------------------------DSLVNISTALVDMYAKCGSLETA 290
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + ++++VSWN+M+ Y +E +L +M+ ++P +S+ G L ACA
Sbjct: 291 RQLFDGMLERNVVSWNSMIDAYVQNENPKEA--MLIFQKMLDEGVKPTDVSVMGALHACA 348
Query: 210 QVKGVKLGKAIHGY-----------VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNS 258
+ ++ G+ IH V+ I + C V + S+F +L +R +V WN+
Sbjct: 349 DLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNA 408
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------- 307
+I F ++G+ +DAL+ + VKP+T T VSV+ A +L+
Sbjct: 409 MILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSC 468
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L FV AL+DMY +CGAI +R IF +M +++ +WN MI YG
Sbjct: 469 LDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYG 515
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/374 (26%), Positives = 173/374 (46%), Gaps = 77/374 (20%)
Query: 21 FLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKG----------------VRPD 64
F ++L+ +FC + S+ V + +N+ Y + KG +R D
Sbjct: 70 FFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYD 129
Query: 65 HFVCPKVY------KACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEI 118
V P VY K C + + RVGK+++ ++ F LDLF G
Sbjct: 130 D-VEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFS---------LDLFAMTG---- 175
Query: 119 TSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFRE 178
L + YAKCR + + F ++ ++DLVSWN ++AGY+ G
Sbjct: 176 -----------------LENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMAR 218
Query: 179 EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH----IHLSTA 234
++ M + +++P+ I++ VL A + ++ + +GK IHGY +R +++STA
Sbjct: 219 MALEMVK--SMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTA 276
Query: 235 -------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
CG + + +F+ + R+VV WNS+I A+V++ +A+ + + ++ VKP
Sbjct: 277 LVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPT 336
Query: 288 TVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFV 336
V+++ L AC L L + GL V N+LI MY +C + + +F
Sbjct: 337 DVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFG 396
Query: 337 LMPHKNLVSWNVMI 350
+ + LVSWN MI
Sbjct: 397 KLQSRTLVSWNAMI 410
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 153/337 (45%), Gaps = 55/337 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W SM+ Y +E + +F M+D+GV+P AC++L D G+ ++
Sbjct: 304 SWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIH--- 360
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
++ + GL D++ V NSLI Y KC+ + +
Sbjct: 361 -----------------------KLSVELGL----DRNVSVVNSLISMYCKCKEVDTAAS 393
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F K++ + LVSWNAM+ G+A G + N +M ++P+T + V+ A A++
Sbjct: 394 MFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMR--SRTVKPDTFTYVSVITAIAEL 451
Query: 212 KGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
K IHG V+R ++ ++TA CG ++ + +F+ +S R V WN++I
Sbjct: 452 SITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMI 511
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
+ G AL+L ++ +KPN VT +SV+ AC + GL +
Sbjct: 512 DGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSI 571
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVS 345
+ A++D+ GR G + ++ + MP K V+
Sbjct: 572 ELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVN 608
Score = 111 bits (278), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 153/322 (47%), Gaps = 59/322 (18%)
Query: 62 RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK--RPLLDLFIKCGRMEIT 119
R HF+ + Y + +VY++ ++ E + +K R +L L K
Sbjct: 20 RHRHFLSERNY----------IPANVYEHPAALLLERCSSLKELRQILPLVFK------- 62
Query: 120 SGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK--FSKIKQKDLVSWNAMLAGYALGGFR 177
+GL+ Q+ L+ + CRY V F I K V ++ ML G+A
Sbjct: 63 NGLY----QEHFFQTKLVSLF--CRYGSVDEAARVFEPIDSKLNVLYHTMLKGFA----- 111
Query: 178 EEVTNLLDEME----MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS- 232
+V++L ++ M D++P + + +L C +++GK IHG +++ L
Sbjct: 112 -KVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDL 170
Query: 233 ----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282
C V + VF+++ RD+V WN+I++ + ++G AL++++ +
Sbjct: 171 FAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEE 230
Query: 283 NVKPNTVTIVSVLPACLKLA-----------ALPQGLGTGSFVWNALIDMYGRCGAIQKS 331
N+KP+ +TIVSVLPA L A+ G + + AL+DMY +CG+++ +
Sbjct: 231 NLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETA 290
Query: 332 RKIFVLMPHKNLVSWNVMISVY 353
R++F M +N+VSWN MI Y
Sbjct: 291 RQLFDGMLERNVVSWNSMIDAY 312
>sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2
SV=1
Length = 768
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 169/349 (48%), Gaps = 60/349 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGV-RPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W+S++ ++ LG+ E ++ M+ GV P+ ++ KACS L G ++
Sbjct: 236 SWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGL 295
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
I + GNA + SL D YA+C +L +
Sbjct: 296 CIKSELAGNA------------------------------IAGCSLCDMYARCGFLNSAR 325
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F +I++ D SWN ++AG A G+ +E ++ +M + P+ ISL +L CAQ
Sbjct: 326 RVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMR--SSGFIPDAISLRSLL--CAQ 381
Query: 211 VKGVKL--GKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQL-STRDVVVW 256
K + L G IH Y+++ + + T C + C ++F + D V W
Sbjct: 382 TKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSW 441
Query: 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP----------- 305
N+I++A ++ Q V+ L L + ++V+ +P+ +T+ ++L C+++++L
Sbjct: 442 NTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLK 501
Query: 306 QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
GL F+ N LIDMY +CG++ ++R+IF M ++++VSW+ +I Y
Sbjct: 502 TGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYA 550
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 119/247 (48%), Gaps = 27/247 (10%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
D ++NN ++ Y KC L+ + F + +++LVS+ +++ GY+ G E L ++
Sbjct: 101 DTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLY--LK 158
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV--LRHHIHLSTACGFVICSCSVFN 246
M+Q D+ P+ + ++ ACA V LGK +H V L HL A +I FN
Sbjct: 159 MLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHL-IAQNALIAMYVRFN 217
Query: 247 QLST----------RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV-KPNTVTIVSVL 295
Q+S +D++ W+SII+ F + G +AL L++++ V PN S L
Sbjct: 218 QMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSL 277
Query: 296 PACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLV 344
AC L G L + +L DMY RCG + +R++F + +
Sbjct: 278 KACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTA 337
Query: 345 SWNVMIS 351
SWNV+I+
Sbjct: 338 SWNVIIA 344
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 148/344 (43%), Gaps = 54/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
++TS++ Y+ G E + L+ M+ + + PD F + KAC+ D +GK ++ +
Sbjct: 135 SYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQV 194
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I ++E +S L + N+LI Y + + +
Sbjct: 195 I----------------------KLESSSHL--------IAQNALIAMYVRFNQMSDASR 224
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F I KDL+SW++++AG++ GF E + L EM PN L AC+ +
Sbjct: 225 VFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGV-FHPNEYIFGSSLKACSSL 283
Query: 212 KGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
G IHG ++ + + CGF+ + VF+Q+ D WN II
Sbjct: 284 LRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVII 343
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV--W--- 315
+ +G +A+ + + + P+ +++ S+L A K AL QG+ S++ W
Sbjct: 344 AGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFL 403
Query: 316 ------NALIDMYGRCGAIQKSRKIFV-LMPHKNLVSWNVMISV 352
N+L+ MY C + +F + + VSWN +++
Sbjct: 404 ADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTA 447
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 145/346 (41%), Gaps = 57/346 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W ++ GY +E V++F M G PD + A ++ G ++ Y+
Sbjct: 338 SWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYI 397
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I F + V LL ++ C + LFE DF N
Sbjct: 398 IKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFE----DFRNN------------------ 435
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME-MIQTDMQPNTISLSGVLAACAQ 210
D VSWN +L E+ +L + M+ ++ +P+ I++ +L C +
Sbjct: 436 -------ADSVSWNTILTACLQ---HEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVE 485
Query: 211 VKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259
+ +KLG +H Y L+ I + CG + + +F+ + RDVV W+++
Sbjct: 486 ISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTL 545
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC---------LKLAALPQ---G 307
I + +SG +AL L +++ A ++PN VT V VL AC LKL A Q G
Sbjct: 546 IVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHG 605
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ + ++D+ R G + ++ + M ++V W ++S
Sbjct: 606 ISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSA 651
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 99/238 (41%), Gaps = 51/238 (21%)
Query: 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL 107
E++ LF LM+ PDH + + C E+ ++G V+ Y
Sbjct: 456 EMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCY----------------- 498
Query: 108 DLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAM 167
+ +GL E + N LID YAKC L + F + +D+VSW+ +
Sbjct: 499 ---------SLKTGLAPEQ----FIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTL 545
Query: 168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH 227
+ GYA GF EE L EM+ ++PN ++ GVL AC+ V V+ G ++ +
Sbjct: 546 IVGYAQSGFGEEALILFKEMK--SAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTE 603
Query: 228 HIHLSTACGFVICSCSV--------FNQLS--------TRDVVVWNSIISAFVRSGQV 269
H T CSC V N+ DVVVW +++SA G V
Sbjct: 604 HGISPTK---EHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNV 658
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 86/174 (49%), Gaps = 22/174 (12%)
Query: 203 GVLAACAQVKGVKLGKAIHGYVL-----------RHHIHLSTACGFVICSCSVFNQLSTR 251
++ AC+ + + G+ IH ++L H + + CG + + VF+ + R
Sbjct: 72 SLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPER 131
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---- 307
++V + S+I+ + ++GQ +A+ L ++ ++ P+ S++ AC + + G
Sbjct: 132 NLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLH 191
Query: 308 -----LGTGSFV--WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
L + S + NALI MY R + + ++F +P K+L+SW+ +I+ +
Sbjct: 192 AQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFS 245
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 74/145 (51%), Gaps = 18/145 (12%)
Query: 224 VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG---QVVDALDLLRDVI 280
+LR +S + ++ + SV + + T +++ N I++ +S + ++A D +
Sbjct: 4 MLRLGARVSVSNSQILATSSVVSTIKTEELM--NDHINSLCKSNFYREALEAFDFAQKN- 60
Query: 281 VANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNA-----------LIDMYGRCGAIQ 329
++ K T +S++ AC +L QG + N+ ++ MYG+CG+++
Sbjct: 61 -SSFKIRLRTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLR 119
Query: 330 KSRKIFVLMPHKNLVSWNVMISVYG 354
+R++F MP +NLVS+ +I+ Y
Sbjct: 120 DAREVFDFMPERNLVSYTSVITGYS 144
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 30/152 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
++LG QVH + + G+ F+ + L++++ +W++++
Sbjct: 489 LKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVG 548
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM-----ISI 94
Y G+ EE + LF M G+ P+H V ACS + G +Y M IS
Sbjct: 549 YAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISP 608
Query: 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126
E +CV +DL + GR+ +EM
Sbjct: 609 TKEHCSCV----VDLLARAGRLNEAERFIDEM 636
>sp|Q9FM64|PP431_ARATH Pentatricopeptide repeat-containing protein At5g55740,
chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1
Length = 830
Score = 135 bits (339), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 162/345 (46%), Gaps = 54/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++G+ +G E + F M++ + PD+FV P V KAC LK R G+ V+ Y+
Sbjct: 140 SWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYV 199
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ E CV V +SL D Y KC L +
Sbjct: 200 VKSGLED--CV----------------------------FVASSLADMYGKCGVLDDASK 229
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I ++ V+WNA++ GY G EE L +M + ++P +++S L+A A +
Sbjct: 230 VFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMR--KQGVEPTRVTVSTCLSASANM 287
Query: 212 KGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSII 260
GV+ GK H + + + L G + + VF+++ +DVV WN II
Sbjct: 288 GGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLII 347
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LG 309
S +V+ G V DA+ + + + + +K + VT+ +++ A + L G
Sbjct: 348 SGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFE 407
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + + ++DMY +CG+I ++K+F K+L+ WN +++ Y
Sbjct: 408 SDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYA 452
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/426 (22%), Positives = 183/426 (42%), Gaps = 87/426 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+E G Q HA IV G+EL LG+ LL +C W ++
Sbjct: 290 VEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISG 349
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G E+ + + LM + ++ D + A + ++ ++GK+V Y I FE +
Sbjct: 350 YVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESD 409
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEE-MDQDFLVNNSLIDFYAKC--------------- 143
+ ++D++ KCG + +F+ +++D ++ N+L+ YA+
Sbjct: 410 IVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQL 469
Query: 144 ------------------RYLKVSHCK--FSKIKQK----DLVSWNAMLAGYALGGFREE 179
R +V K F +++ +L+SW M+ G G EE
Sbjct: 470 EGVPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMMNGMVQNGCSEE 529
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS------- 232
L +M+ ++ ++PN S++ L+ACA + + +G+ IHGY++R+ H S
Sbjct: 530 AILFLRKMQ--ESGLRPNAFSITVALSACAHLASLHIGRTIHGYIIRNLQHSSLVSIETS 587
Query: 233 -----TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
CG + + VF ++ + N++ISA+ G + +A+ L R + +KP+
Sbjct: 588 LVDMYAKCGDINKAEKVFGSKLYSELPLSNAMISAYALYGNLKEAIALYRSLEGVGLKPD 647
Query: 288 TVTIVSVLPACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIF 335
+TI +VL AC + Q + + + + ++D+ G +K+ ++
Sbjct: 648 NITITNVLSACNHAGDINQAIEIFTDIVSKRSMKPCLEHYGLMVDLLASAGETEKALRLI 707
Query: 336 VLMPHK 341
MP K
Sbjct: 708 EEMPFK 713
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 147/299 (49%), Gaps = 32/299 (10%)
Query: 77 ELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSL 136
+ ++ R+G ++Y ++ CV L + + +G F ++ + L
Sbjct: 62 DFRNLRIGPEIYGEIL------QGCVYERDLSTGKQIHARILKNGDFYARNE--YIETKL 113
Query: 137 IDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP 196
+ FYAKC L+++ FSK++ +++ SW A++ G E L+ +EM++ ++ P
Sbjct: 114 VIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRIGLCEGA--LMGFVEMLENEIFP 171
Query: 197 NTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH-----------LSTACGFVICSCSVF 245
+ + V AC +K + G+ +HGYV++ + + CG + + VF
Sbjct: 172 DNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVF 231
Query: 246 NQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA--- 302
+++ R+ V WN+++ +V++G+ +A+ L D+ V+P VT+ + L A +
Sbjct: 232 DEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVE 291
Query: 303 --------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
A+ G+ + + +L++ Y + G I+ + +F M K++V+WN++IS Y
Sbjct: 292 EGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISGY 350
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/385 (21%), Positives = 162/385 (42%), Gaps = 92/385 (23%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYN 41
G VH +++ G+E C F+ S L +++ W ++M Y
Sbjct: 191 FGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYV 250
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
G EE + LF M +GV P A + + GK +
Sbjct: 251 QNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEGKQSH------------- 297
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ I +G M+ D ++ SL++FY K ++ + F ++ +KD+
Sbjct: 298 -------------AIAIVNG----MELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDV 340
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
V+WN +++GY G E+ + M + ++ + ++L+ +++A A+ + +KLGK +
Sbjct: 341 VTWNLIISGYVQQGLVEDAIYMCQLMRL--EKLKYDCVTLATLMSAAARTENLKLGKEVQ 398
Query: 222 GYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
Y +RH + + CG ++ + VF+ +D+++WN++++A+ SG
Sbjct: 399 CYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSG 458
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQK 330
+AL L + + V PN +T WN +I R G + +
Sbjct: 459 EALRLFYGMQLEGVPPNVIT------------------------WNLIILSLLRNGQVDE 494
Query: 331 SRKIFVLMPHK----NLVSWNVMIS 351
++ +F+ M NL+SW M++
Sbjct: 495 AKDMFLQMQSSGIIPNLISWTTMMN 519
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 134 bits (338), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 98/398 (24%), Positives = 182/398 (45%), Gaps = 47/398 (11%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF--CNW-------------------TSMMGM 39
+E G +V+A + G+E+ + S L++++ CN +M
Sbjct: 252 LETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASN 311
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y G E + +F LM+D GVRPD +CS+L++ GK + Y++ FE
Sbjct: 312 YVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESW 371
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKIKQ 158
+ L+D+++KC R + +F+ M +V NS++ Y + + + F + +
Sbjct: 372 DNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPE 431
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
K++VSWN +++G G EE + M+ Q + + +++ + +AC + + L K
Sbjct: 432 KNIVSWNTIISGLVQGSLFEEAIEVFCSMQS-QEGVNADGVTMMSIASACGHLGALDLAK 490
Query: 219 AIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
I+ Y+ ++ I L + CG + S+FN L+ RDV W + I A +G
Sbjct: 491 WIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAG 550
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GLGTGSFVW 315
A++L D+I +KP+ V V L AC + Q G+ +
Sbjct: 551 NAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHY 610
Query: 316 NALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
++D+ GR G ++++ ++ MP N V WN +++
Sbjct: 611 GCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAA 648
Score = 121 bits (304), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 75/343 (21%), Positives = 164/343 (47%), Gaps = 53/343 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
+ S++ Y G E + LF M++ G+ PD + P AC++ + G ++ ++
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ + +D V NSL+ FYA+C L +
Sbjct: 162 KMGYA------------------------------KDLFVQNSLVHFYAECGELDSARKV 191
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ ++++VSW +M+ GYA F ++ +L M + ++ PN++++ V++ACA+++
Sbjct: 192 FDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRM-VRDEEVTPNSVTMVCVISACAKLE 250
Query: 213 GVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIIS 261
++ G+ ++ ++ I ++ C + + +F++ ++ + N++ S
Sbjct: 251 DLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMAS 310
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-----------ALPQGLGT 310
+VR G +AL + ++ + V+P+ ++++S + +C +L L G +
Sbjct: 311 NYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFES 370
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ NALIDMY +C + +IF M +K +V+WN +++ Y
Sbjct: 371 WDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGY 413
Score = 112 bits (279), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 93/419 (22%), Positives = 174/419 (41%), Gaps = 108/419 (25%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
GIQ+H ++ G F+ + L+ + +WTSM+ Y
Sbjct: 153 GIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYAR 212
Query: 43 LGYYEEIVNLFYLMI-DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+ ++ V+LF+ M+ D+ V P+ V AC++L+D G+ VY ++ + E N
Sbjct: 213 RDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDL 272
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ L+D+++KC +++ LF+E L DL
Sbjct: 273 MVSALVDMYMKCNAIDVAKRLFDEYGASNL----------------------------DL 304
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
NAM + Y G E + + M+ + ++P+ IS+ +++C+Q++ + GK+ H
Sbjct: 305 C--NAMASNYVRQGLTREALGVFN--LMMDSGVRPDRISMLSAISSCSQLRNILWGKSCH 360
Query: 222 GYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
GYVLR+ I + C + +F+++S + VV WNSI++ +V +G+V
Sbjct: 361 GYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVD 420
Query: 271 DALDLLRDVIVAN--------------------------------VKPNTVTIVSVLPAC 298
A + + N V + VT++S+ AC
Sbjct: 421 AAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASAC 480
Query: 299 LKLAAL-----------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
L AL G+ + L+DM+ RCG + + IF + ++++ +W
Sbjct: 481 GHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAW 539
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA----------- 303
++NS+I + SG +A+ L ++ + + P+ T L AC K A
Sbjct: 101 MYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLI 160
Query: 304 LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ G FV N+L+ Y CG + +RK+F M +N+VSW MI Y
Sbjct: 161 VKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYA 211
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 134 bits (338), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 164/345 (47%), Gaps = 27/345 (7%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+ Y G +E LF M D V PD + + AC + R + +Y+++I
Sbjct: 180 WNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLI 239
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHC 151
+ + L+ ++ G M++ F +M ++ V+ +++ Y+KC L +
Sbjct: 240 ENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQV 299
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + ++KDLV W M++ Y + +E + +EM + ++P+ +S+ V++ACA +
Sbjct: 300 IFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEM--CCSGIKPDVVSMFSVISACANL 357
Query: 212 KGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ K +H + L + ++ A CG + + VF ++ R+VV W+S+I
Sbjct: 358 GILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMI 417
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
+A G+ DAL L + NV+PN VT V VL C + +G + +
Sbjct: 418 NALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNI 477
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISV 352
+ ++D++GR ++++ ++ MP N+V W ++S
Sbjct: 478 TPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSA 522
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 156/355 (43%), Gaps = 86/355 (24%)
Query: 52 LFYLMIDK-GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLF 110
LFY I G R D F + KA S++ G +++ I + V+ +D++
Sbjct: 97 LFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMY 156
Query: 111 IKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAG 170
CGR+ +F+EM SH +D+V+WN M+
Sbjct: 157 ASCGRINYARNVFDEM----------------------SH--------RDVVTWNTMIER 186
Query: 171 YALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL----R 226
Y G +E L +EM+ +++ P+ + L +++AC + ++ +AI+ +++ R
Sbjct: 187 YCRFGLVDEAFKLFEEMK--DSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVR 244
Query: 227 HHIHLSTA--------------------------------------CGFVICSCSVFNQL 248
HL TA CG + + +F+Q
Sbjct: 245 MDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQT 304
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-- 306
+D+V W ++ISA+V S +AL + ++ + +KP+ V++ SV+ AC L L +
Sbjct: 305 EKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAK 364
Query: 307 ---------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
GL + + NALI+MY +CG + +R +F MP +N+VSW+ MI+
Sbjct: 365 WVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINA 419
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 82/180 (45%), Gaps = 22/180 (12%)
Query: 197 NTISLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFVICSCSVF 245
+ S +L A ++V + G +HG +V + + +CG + + +VF
Sbjct: 110 DQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVF 169
Query: 246 NQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP 305
+++S RDVV WN++I + R G V +A L ++ +NV P+ + + +++ AC + +
Sbjct: 170 DEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMR 229
Query: 306 QGLGTGSF-----------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
F + AL+ MY G + +R+ F M +NL M+S Y
Sbjct: 230 YNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYS 289
Score = 32.0 bits (71), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 14/120 (11%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVY--- 88
+W+SM+ ++ G + ++LF M + V P+ V CS GK ++
Sbjct: 412 SWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASM 471
Query: 89 --DYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLI--DFYAKCR 144
+Y I+ K E C ++DLF GR + E ++ + +N +I + CR
Sbjct: 472 TDEYNITPKLEHYGC----MVDLF---GRANLLREALEVIESMPVASNVVIWGSLMSACR 524
>sp|Q9SB36|PP337_ARATH Pentatricopeptide repeat-containing protein At4g25270,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E53 PE=3
SV=1
Length = 527
Score = 134 bits (338), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 152/327 (46%), Gaps = 61/327 (18%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ Y LG YE+ + L++ M + GV+PD F P+V KAC + ++G+ ++ ++
Sbjct: 163 WNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDLV 222
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
E D V N+L+ YAKC + +
Sbjct: 223 K------------------------------EGFGYDVYVLNALVVMYAKCGDIVKARNV 252
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F I KD VSWN+ML GY G E ++ M+Q ++P+ +++S VL A+V
Sbjct: 253 FDMIPHKDYVSWNSMLTGYLHHGLLHEALDIF--RLMVQNGIEPDKVAISSVL---ARVL 307
Query: 213 GVKLGKAIHGYVLRHHI--HLSTACGFVIC---------SCSVFNQLSTRDVVVWNSIIS 261
K G+ +HG+V+R + LS A ++ +C +F+Q+ RD V WN+IIS
Sbjct: 308 SFKHGRQLHGWVIRRGMEWELSVANALIVLYSKRGQLGQACFIFDQMLERDTVSWNAIIS 367
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------- 314
A ++ + L + AN KP+ +T VSVL C + G S +
Sbjct: 368 AHSKNS---NGLKYFEQMHRANAKPDGITFVSVLSLCANTGMVEDGERLFSLMSKEYGID 424
Query: 315 -----WNALIDMYGRCGAIQKSRKIFV 336
+ ++++YGR G ++++ + V
Sbjct: 425 PKMEHYACMVNLYGRAGMMEEAYSMIV 451
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 129/243 (53%), Gaps = 23/243 (9%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKD--LVSWNAMLAGYALGGFREEVTNLLDEMEM 189
+++ L+ YA C Y +V+H F ++ ++D +WN++++GYA G E+ L +M
Sbjct: 129 ISSKLVRLYASCGYAEVAHEVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALY--FQM 186
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG-----------YVLRHHIHLSTACGFV 238
+ ++P+ + VL AC + V++G+AIH YVL + + CG +
Sbjct: 187 AEDGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDI 246
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ + +VF+ + +D V WNS+++ ++ G + +ALD+ R ++ ++P+ V I SVL
Sbjct: 247 VKARNVFDMIPHKDYVSWNSMLTGYLHHGLLHEALDIFRLMVQNGIEPDKVAISSVLARV 306
Query: 299 LKLA--------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
L + +G+ V NALI +Y + G + ++ IF M ++ VSWN +I
Sbjct: 307 LSFKHGRQLHGWVIRRGMEWELSVANALIVLYSKRGQLGQACFIFDQMLERDTVSWNAII 366
Query: 351 SVY 353
S +
Sbjct: 367 SAH 369
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 106/203 (52%), Gaps = 33/203 (16%)
Query: 184 LDEMEMIQTDMQPNT---ISLS------GVLAACAQVKGVKLGKAIH----GYVLRHHIH 230
L+ ++ + TD++ + ISL+ +L C ++ + G +H Y+LR+++
Sbjct: 69 LEALDSVITDLETSAQKGISLTEPEIFASLLETCYSLRAIDHGVRVHHLIPPYLLRNNLG 128
Query: 231 LST-------ACGFVICSCSVFNQLSTRDV--VVWNSIISAFVRSGQVVDALDLLRDVIV 281
+S+ +CG+ + VF+++S RD WNS+IS + GQ DA+ L +
Sbjct: 129 ISSKLVRLYASCGYAEVAHEVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQMAE 188
Query: 282 ANVKPNTVTIVSVLPACLKLAAL-----------PQGLGTGSFVWNALIDMYGRCGAIQK 330
VKP+ T VL AC + ++ +G G +V NAL+ MY +CG I K
Sbjct: 189 DGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVK 248
Query: 331 SRKIFVLMPHKNLVSWNVMISVY 353
+R +F ++PHK+ VSWN M++ Y
Sbjct: 249 ARNVFDMIPHKDYVSWNSMLTGY 271
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 84/192 (43%), Gaps = 40/192 (20%)
Query: 30 FCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
+ +W SM+ Y G E +++F LM+ G+ PD V + + ++ G+ ++
Sbjct: 261 YVSWNSMLTGYLHHGLLHEALDIFRLMVQNGIEPDKVAISSV---LARVLSFKHGRQLHG 317
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
++I M+ + V N+LI Y+K L +
Sbjct: 318 WVIR------------------------------RGMEWELSVANALIVLYSKRGQLGQA 347
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME-MIQTDMQPNTISLSGVLAAC 208
F ++ ++D VSWNA+++ ++ + +N L E M + + +P+ I+ VL+ C
Sbjct: 348 CFIFDQMLERDTVSWNAIISAHS------KNSNGLKYFEQMHRANAKPDGITFVSVLSLC 401
Query: 209 AQVKGVKLGKAI 220
A V+ G+ +
Sbjct: 402 ANTGMVEDGERL 413
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/405 (24%), Positives = 186/405 (45%), Gaps = 63/405 (15%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGM 39
+ LG Q+H +I G E +GS LL ++ N + S+MG
Sbjct: 155 VSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGG 214
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
G E+ + LF +G+ D + K L + K+ + +K +G
Sbjct: 215 LLACGMIEDALQLF-----RGMEKDSVSWAAMIKG---LAQNGLAKEAIECFREMKVQGL 266
Query: 100 ACVKRPLLDLFIKCGRM-------EITSGLFEEMDQDFL-VNNSLIDFYAKCRYLKVSHC 151
+ P + CG + +I + + QD + V ++LID Y KC+ L +
Sbjct: 267 KMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKT 326
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++KQK++VSW AM+ GY G EE + ++M ++ + P+ +L ++ACA V
Sbjct: 327 VFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIF--LDMQRSGIDPDHYTLGQAISACANV 384
Query: 212 KGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
++ G HG + H++ +S + CG + S +FN+++ RD V W +++
Sbjct: 385 SSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMV 444
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----LGTGSFV- 314
SA+ + G+ V+ + L ++ +KP+ VT+ V+ AC + + +G L T +
Sbjct: 445 SAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGI 504
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMPH-KNLVSWNVMISV 352
++ +ID++ R G ++++ + MP + + W ++S
Sbjct: 505 VPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSA 549
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 149/296 (50%), Gaps = 30/296 (10%)
Query: 83 VGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYA 141
+GK ++ +I + FE V PLL ++ G + +F +D ++ ++ NSL+
Sbjct: 157 LGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLL 216
Query: 142 KCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM--IQTDMQPNTI 199
C ++ + F + +KD VSW AM+ G A G +E EM++ ++ D P
Sbjct: 217 ACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYP--- 272
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTACGFVICSC-------SVFNQL 248
VL AC + + GK IH ++R HI++ +A + C C +VF+++
Sbjct: 273 -FGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRM 331
Query: 249 STRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG- 307
++VV W +++ + ++G+ +A+ + D+ + + P+ T+ + AC +++L +G
Sbjct: 332 KQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGS 391
Query: 308 ------LGTGSF----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ +G V N+L+ +YG+CG I S ++F M ++ VSW M+S Y
Sbjct: 392 QFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAY 447
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 121/286 (42%), Gaps = 54/286 (18%)
Query: 122 LFEEMDQDFLVN-NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEV 180
+F+ + Q L + N+L+ Y+K + F K+ +D V+WN ++ GY+L G
Sbjct: 63 VFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAA 122
Query: 181 TNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-----------HHI 229
+ M M ++L +L + V LGK IHG V++ +
Sbjct: 123 VKAYNTM-MRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLL 181
Query: 230 HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLR------------ 277
++ G + + VF L R+ V++NS++ + G + DAL L R
Sbjct: 182 YMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAM 241
Query: 278 ------------------DVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS------- 312
++ V +K + SVLPAC L A+ +G +
Sbjct: 242 IKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNF 301
Query: 313 ----FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+V +ALIDMY +C + ++ +F M KN+VSW M+ YG
Sbjct: 302 QDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYG 347
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 312 SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+F++N ++ Y + +R++F +P NL SWN ++ Y
Sbjct: 41 TFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAY 82
>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580
OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1
Length = 882
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 180/392 (45%), Gaps = 77/392 (19%)
Query: 6 QVHAHLIVCGVELCAFLGSQLLEVFCN----------------------WTSMMGMYNVL 43
++HA +I G++ F +L++ + + W S++ ++
Sbjct: 25 RIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFSKN 84
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G + E + + + + V PD + P V KAC+ L D +G VY+ ++ + FE
Sbjct: 85 GLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFE------ 138
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
D V N+L+D Y++ L + F ++ +DLVS
Sbjct: 139 ------------------------SDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVS 174
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
WN++++GY+ G+ EE + E++ + + P++ ++S VL A + VK G+ +HG+
Sbjct: 175 WNSLISGYSSHGYYEEALEIYHELK--NSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGF 232
Query: 224 VLRHHIHLSTACGFVICSC-----------SVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
L+ ++ + + VF+++ RD V +N++I +++ V ++
Sbjct: 233 ALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEES 292
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPAC-----LKLAA------LPQGLGTGSFVWNALIDM 321
+ + + + KP+ +T+ SVL AC L LA L G S V N LID+
Sbjct: 293 VRMFLENL-DQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDV 351
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
Y +CG + +R +F M K+ VSWN +IS Y
Sbjct: 352 YAKCGDMITARDVFNSMECKDTVSWNSIISGY 383
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/395 (25%), Positives = 177/395 (44%), Gaps = 78/395 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
E+G V+ ++ G E F+G+ L++++ +W S++ Y
Sbjct: 123 EMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGY 182
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
+ GYYEE + +++ + + + PD F V A L + G+ ++ + +
Sbjct: 183 SSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVV 242
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
V L+ +++K R +F+EMD +D
Sbjct: 243 VVNNGLVAMYLKFRRPTDARRVFDEMDV------------------------------RD 272
Query: 161 LVSWNAMLAGY-ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
VS+N M+ GY L E V L+ ++ + P+ +++S VL AC ++ + L K
Sbjct: 273 SVSYNTMICGYLKLEMVEESVRMFLENLDQFK----PDLLTVSSVLRACGHLRDLSLAKY 328
Query: 220 IHGYVLRHHIHLSTA-----------CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
I+ Y+L+ L + CG +I + VFN + +D V WNSIIS +++SG
Sbjct: 329 IYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGD 388
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGS-----------FVWNA 317
+++A+ L + +++ + + +T + ++ +LA L G G S V NA
Sbjct: 389 LMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNA 448
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
LIDMY +CG + S KIF M + V+WN +IS
Sbjct: 449 LIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISA 483
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/345 (27%), Positives = 156/345 (45%), Gaps = 55/345 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
++ +M+ Y L EE V +F +D+ +PD V +AC L+D + K +Y+YM
Sbjct: 275 SYNTMICGYLKLEMVEESVRMFLENLDQ-FKPDLLTVSSVLRACGHLRDLSLAKYIYNYM 333
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F + V+ N LID YAKC + +
Sbjct: 334 LKAGFVLESTVR------------------------------NILIDVYAKCGDMITARD 363
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F+ ++ KD VSWN++++GY G E L M +++ Q + I+ +++ ++
Sbjct: 364 VFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEE--QADHITYLMLISVSTRL 421
Query: 212 KGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+K GK +H ++ I + CG V S +F+ + T D V WN++I
Sbjct: 422 ADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVI 481
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLG 309
SA VR G L + + + V P+ T + LP C LAA L G
Sbjct: 482 SACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYE 541
Query: 310 TGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + NALI+MY +CG ++ S ++F M +++V+W MI YG
Sbjct: 542 SELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYG 586
Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 80/333 (24%), Positives = 140/333 (42%), Gaps = 55/333 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ Y G E + LF +M+ + DH + + L D + GK ++
Sbjct: 375 SWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLH--- 431
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
S + C+ D V+N+LID YAKC + S
Sbjct: 432 -SNGIKSGICI--------------------------DLSVSNALIDMYAKCGEVGDSLK 464
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS + D V+WN +++ A F + T L +M ++++ P+ + L CA +
Sbjct: 465 IFSSMGTGDTVTWNTVIS--ACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASL 522
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
+LGK IH +LR I + + CG + S VF ++S RDVV W +I
Sbjct: 523 AAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMI 582
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
A+ G+ AL+ D+ + + P++V ++++ AC + +GL +
Sbjct: 583 YAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKI 642
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMPHK 341
+ ++D+ R I K+ + MP K
Sbjct: 643 DPMIEHYACVVDLLSRSQKISKAEEFIQAMPIK 675
Score = 31.6 bits (70), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 21/96 (21%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
LG ++H L+ G E +G+ L+E++ WT M+ Y
Sbjct: 526 RLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAY 585
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACS 76
+ G E+ + F M G+ PD V + ACS
Sbjct: 586 GMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACS 621
>sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370
OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2
Length = 960
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 156/346 (45%), Gaps = 56/346 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M+G Y G + L++ M +GV P + KAC++L+D R G +++ ++
Sbjct: 150 WNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLV 209
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ + F+VN +L+ YAK L +
Sbjct: 210 KLGYHSTG-----------------------------FIVN-ALVSMYAKNDDLSAARRL 239
Query: 153 FSKIKQK-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++K D V WN++L+ Y+ G E L EM M T PN+ ++ L AC
Sbjct: 240 FDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHM--TGPAPNSYTIVSALTACDGF 297
Query: 212 KGVKLGKAIHGYVLRHHIHLS------------TACGFVICSCSVFNQLSTRDVVVWNSI 259
KLGK IH VL+ H S T CG + + + Q++ DVV WNS+
Sbjct: 298 SYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSL 357
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----W 315
I +V++ +AL+ D+I A K + V++ S++ A +L+ L G+ ++V W
Sbjct: 358 IKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGW 417
Query: 316 -------NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
N LIDMY +C + F+ M K+L+SW +I+ Y
Sbjct: 418 DSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYA 463
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/341 (20%), Positives = 147/341 (43%), Gaps = 54/341 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W S++ Y+ G E + LF M G P+ + AC ++GK+++ ++
Sbjct: 252 WNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVL 311
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
+ + V N+LI Y +C + +
Sbjct: 312 KSSTHSS-----------------------------ELYVCNALIAMYTRCGKMPQAERI 342
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
++ D+V+WN+++ GY +E +MI + + +S++ ++AA ++
Sbjct: 343 LRQMNNADVVTWNSLIKGYVQNLMYKEALEFFS--DMIAAGHKSDEVSMTSIIAASGRLS 400
Query: 213 GVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ G +H YV++H I + + C F ++ +D++ W ++I+
Sbjct: 401 NLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIA 460
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLGT 310
+ ++ V+AL+L RDV ++ + + + S+L A L + L +GL
Sbjct: 461 GYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL-L 519
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+ + N L+D+YG+C + + ++F + K++VSW MIS
Sbjct: 520 DTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMIS 560
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 121/258 (46%), Gaps = 33/258 (12%)
Query: 123 FEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTN 182
F + DFL L+ Y KC L + F ++ + +WN M+ Y G E +
Sbjct: 110 FPSFELDFLAGK-LVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNG--EPASA 166
Query: 183 LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVI--- 239
L M + S +L ACA+++ ++ G +H +++ H + GF++
Sbjct: 167 LALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYH---STGFIVNAL 223
Query: 240 -----------CSCSVFNQLSTR-DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN 287
+ +F+ + D V+WNSI+S++ SG+ ++ L+L R++ + PN
Sbjct: 224 VSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPN 283
Query: 288 TVTIVSVLPAC--LKLAALPQGL----------GTGSFVWNALIDMYGRCGAIQKSRKIF 335
+ TIVS L AC A L + + + +V NALI MY RCG + ++ +I
Sbjct: 284 SYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERIL 343
Query: 336 VLMPHKNLVSWNVMISVY 353
M + ++V+WN +I Y
Sbjct: 344 RQMNNADVVTWNSLIKGY 361
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 150/344 (43%), Gaps = 53/344 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W S++ Y Y+E + F MI G + D + A L + G +++ Y+
Sbjct: 353 TWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYV 412
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I ++ N V L+D++ KC L M + FL
Sbjct: 413 IKHGWDSNLQVGNTLIDMYSKC-------NLTCYMGRAFL-------------------- 445
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
++ KDL+SW ++AGYA E L ++ + M+ + + L +L A + +
Sbjct: 446 ---RMHDKDLISWTTVIAGYAQNDCHVEALELF--RDVAKKRMEIDEMILGSILRASSVL 500
Query: 212 KGVKLGKAIHGYVLRHH----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
K + + K IH ++LR + + C + + VF + +DVV W S+IS
Sbjct: 501 KSMLIVKEIHCHILRKGLLDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMIS 560
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWN----- 316
+ +G +A++L R ++ + ++V ++ +L A L+AL +G ++
Sbjct: 561 SSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCL 620
Query: 317 ------ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
A++DMY CG +Q ++ +F + K L+ + MI+ YG
Sbjct: 621 EGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYG 664
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/338 (23%), Positives = 158/338 (46%), Gaps = 65/338 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF--CNWTSMMG-----MYN---------VLGYYE 47
G+++HA++I G + +G+ L++++ CN T MG M++ + GY +
Sbjct: 405 GMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQ 464
Query: 48 -----EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
E + LF + K + D + + +A S LK + K+++ +++
Sbjct: 465 NDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHIL---------- 514
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
++ LLD I+ N L+D Y KCR + + F IK KD+V
Sbjct: 515 RKGLLDTVIQ---------------------NELVDVYGKCRNMGYATRVFESIKGKDVV 553
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
SW +M++ AL G E L M++T + ++++L +L+A A + + G+ IH
Sbjct: 554 SWTSMISSSALNGNESEAVELF--RRMVETGLSADSVALLCILSAAASLSALNKGREIHC 611
Query: 223 YVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271
Y+LR + + CG + + +VF+++ + ++ + S+I+A+ G
Sbjct: 612 YLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKA 671
Query: 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG 309
A++L + NV P+ ++ +++L AC L +G G
Sbjct: 672 AVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRG 709
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 24/174 (13%)
Query: 204 VLAACAQVKGVKLGKAIHGYVLRHH------------IHLSTACGFVICSCSVFNQLSTR 251
VL C + + V G+ +H + + + + CG + + VF+++ R
Sbjct: 86 VLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDR 145
Query: 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---- 307
WN++I A+V +G+ AL L ++ V V + ++L AC KL + G
Sbjct: 146 TAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELH 205
Query: 308 -----LGTGS--FVWNALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISVY 353
LG S F+ NAL+ MY + + +R++F K + V WN ++S Y
Sbjct: 206 SLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSY 259
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 158/346 (45%), Gaps = 57/346 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-GVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
W +++ Y+ Y+E++ F MI + PDHF P V KAC+ + D +G V+
Sbjct: 153 QWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHG- 211
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
L +K G +E D V N+L+ FY ++ +
Sbjct: 212 ------------------LVVKTGLVE-----------DVFVGNALVSFYGTHGFVTDAL 242
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD--MQPNTISLSGVLAAC 208
F + +++LVSWN+M+ ++ GF EE LL EM D P+ +L VL C
Sbjct: 243 QLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVC 302
Query: 209 AQVKGVKLGKAIHGYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWN 257
A+ + + LGK +HG+ ++ + + + CG + + +F + ++VV WN
Sbjct: 303 AREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWN 362
Query: 258 SIISAFVRSGQVVDALDLLRDVIVA--NVKPNTVTIVSVLPACLKLAALP---------- 305
+++ F G D+LR ++ +VK + VTI++ +P C + LP
Sbjct: 363 TMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSL 422
Query: 306 -QGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
Q V NA + Y +CG++ ++++F + K + SWN +I
Sbjct: 423 KQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALI 468
Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 140/255 (54%), Gaps = 24/255 (9%)
Query: 122 LFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVT 181
L +E + LV N+ + YAKC L + F I+ K + SWNA++ G+A +
Sbjct: 422 LKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSN--DPRL 479
Query: 182 NLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH------HIHLSTAC 235
+L ++M + + P++ ++ +L+AC+++K ++LGK +HG+++R+ ++LS
Sbjct: 480 SLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLS 539
Query: 236 GFVICS--CSV---FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290
++ C C+V F+ + + +V WN++I+ ++++G AL + R +++ ++ ++
Sbjct: 540 LYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGIS 599
Query: 291 IVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339
++ V AC L +L G L +F+ +LIDMY + G+I +S K+F +
Sbjct: 600 MMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLK 659
Query: 340 HKNLVSWNVMISVYG 354
K+ SWN MI YG
Sbjct: 660 EKSTASWNAMIMGYG 674
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 133/270 (49%), Gaps = 34/270 (12%)
Query: 111 IKCGRM--EITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAML 168
I+ GR ++ SG + D L +I YA C S F ++ K+L WNA++
Sbjct: 100 IEMGRKIHQLVSGSTRLRNDDVLCTR-IITMYAMCGSPDDSRFVFDALRSKNLFQWNAVI 158
Query: 169 AGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-- 226
+ Y+ +EV EM + TD+ P+ + V+ ACA + V +G A+HG V++
Sbjct: 159 SSYSRNELYDEVLETFIEM-ISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTG 217
Query: 227 --HHIHLSTAC-------GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLR 277
+ + A GFV + +F+ + R++V WNS+I F +G ++ LL
Sbjct: 218 LVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLG 277
Query: 278 DVIVAN----VKPNTVTIVSVLPACLKLAALPQGLGTGSFVW-------------NALID 320
+++ N P+ T+V+VLP C + + GLG G W NAL+D
Sbjct: 278 EMMEENGDGAFMPDVATLVTVLPVCAREREI--GLGKGVHGWAVKLRLDKELVLNNALMD 335
Query: 321 MYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
MY +CG I ++ IF + +KN+VSWN M+
Sbjct: 336 MYSKCGCITNAQMIFKMNNNKNVVSWNTMV 365
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/398 (21%), Positives = 169/398 (42%), Gaps = 77/398 (19%)
Query: 3 LGIQVHAHLIVCGVELCAFLGSQLLEVF---------------------CNWTSMMGMYN 41
+G+ VH ++ G+ F+G+ L+ + +W SM+ +++
Sbjct: 205 IGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFS 264
Query: 42 VLGYYEEIVNLFYLMI----DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE 97
G+ EE L M+ D PD V C+ ++ +GK V+ + + ++
Sbjct: 265 DNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLR-- 322
Query: 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157
+D++ ++NN+L+D Y+KC + + F
Sbjct: 323 ----------------------------LDKELVLNNALMDMYSKCGCITNAQMIFKMNN 354
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
K++VSWN M+ G++ G ++L +M D++ + +++ + C +
Sbjct: 355 NKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSL 414
Query: 218 KAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266
K +H Y L+ + CG + + VF+ + ++ V WN++I +S
Sbjct: 415 KELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQS 474
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVW 315
+LD + ++ + P++ T+ S+L AC KL +L G L FV+
Sbjct: 475 NDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVY 534
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+++ +Y CG + + +F M K+LVSWN +I+ Y
Sbjct: 535 LSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGY 572
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 127/298 (42%), Gaps = 55/298 (18%)
Query: 60 GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEIT 119
G+ PD F + ACS+LK R+GK+V+ ++I E + V +L L+I CG +
Sbjct: 491 GLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTV 550
Query: 120 SGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREE 179
LF+ M+ K LVSWN ++ GY GF +
Sbjct: 551 QALFDAMED------------------------------KSLVSWNTVITGYLQNGFPDR 580
Query: 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST--AC-- 235
+ +M+ +Q IS+ V AC+ + ++LG+ H Y L+H + AC
Sbjct: 581 ALGVF--RQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSL 638
Query: 236 -------GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288
G + S VFN L + WN++I + G +A+ L ++ P+
Sbjct: 639 IDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDD 698
Query: 289 VTIVSVLPACLKLAALPQGLG-----TGSF-------VWNALIDMYGRCGAIQKSRKI 334
+T + VL AC + +GL SF + +IDM GR G + K+ ++
Sbjct: 699 LTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRV 756
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 24/178 (13%)
Query: 200 SLSGVLAACAQVKGVKLGKAIHGYV-----LRHH-------IHLSTACGFVICSCSVFNQ 247
+L +L A + K +++G+ IH V LR+ I + CG S VF+
Sbjct: 86 ALGLLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDA 145
Query: 248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVLPACLKLAALPQ 306
L ++++ WN++IS++ R+ + L+ ++I ++ P+ T V+ AC ++ +
Sbjct: 146 LRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGI 205
Query: 307 GLG-------TG----SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
GL TG FV NAL+ YG G + + ++F +MP +NLVSWN MI V+
Sbjct: 206 GLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVF 263
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 89/200 (44%), Gaps = 36/200 (18%)
Query: 12 IVCGVELC---AFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVC 68
I CG ELC A + + +W +++ Y G+ + + +F M+ G++
Sbjct: 542 IHCG-ELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISM 600
Query: 69 PKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ 128
V+ ACS L R+G++ + Y + E +A FI C
Sbjct: 601 MPVFGACSLLPSLRLGREAHAYALKHLLEDDA---------FIAC--------------- 636
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
SLID YAK + S F+ +K+K SWNAM+ GY + G +E L +EM+
Sbjct: 637 ------SLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQ 690
Query: 189 MIQTDMQPNTISLSGVLAAC 208
+T P+ ++ GVL AC
Sbjct: 691 --RTGHNPDDLTFLGVLTAC 708
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 132 bits (333), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/373 (24%), Positives = 178/373 (47%), Gaps = 32/373 (8%)
Query: 10 HLIVCGVELCAFLGSQLLEV-FCNWTSMMGMYNVLGYYEEIVNLFYLMI-DKGVRPDHFV 67
H+ V ++L Q+ E W SM+ +N GY +++F M+ D + PD F
Sbjct: 222 HMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFT 281
Query: 68 CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM- 126
V AC+ L+ +GK ++ ++++ F+ + V L+ ++ +CG +E L E+
Sbjct: 282 LASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRG 341
Query: 127 DQDFLVN--NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLL 184
+D + +L+D Y K + + F +K +D+V+W AM+ GY G E NL
Sbjct: 342 TKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLF 401
Query: 185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTA------ 234
M+ +PN+ +L+ +L+ + + + GK IHG ++ + + +S A
Sbjct: 402 --RSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYA 459
Query: 235 -CGFVICSCSVFNQLS-TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292
G + + F+ + RD V W S+I A + G +AL+L +++ ++P+ +T V
Sbjct: 460 KAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYV 519
Query: 293 SVLPACLKLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFVLMP- 339
V AC + QG + + ++D++GR G +Q++++ MP
Sbjct: 520 GVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPI 579
Query: 340 HKNLVSWNVMISV 352
++V+W ++S
Sbjct: 580 EPDVVTWGSLLSA 592
Score = 131 bits (330), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 93/389 (23%), Positives = 179/389 (46%), Gaps = 58/389 (14%)
Query: 19 CAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL 78
C F +WT+M+ Y +G Y + + + M+ +G+ P F V + +
Sbjct: 100 CEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAAT 159
Query: 79 KDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLI 137
+ GK V+ +++ + GN V LL+++ KCG + +F+ M +D N++I
Sbjct: 160 RCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMI 219
Query: 138 DFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN 197
+ + + ++ +F ++ ++D+V+WN+M++G+ G+ ++ +M + + + P+
Sbjct: 220 ALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKM-LRDSLLSPD 278
Query: 198 TISLSGVLAACAQVKGVKLGKAIH-----------GYVLRHHIHLSTACGFVIC------ 240
+L+ VL+ACA ++ + +GK IH G VL I + + CG V
Sbjct: 279 RFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIE 338
Query: 241 ---------------------------SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
+ ++F L RDVV W ++I + + G +A+
Sbjct: 339 QRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAI 398
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGSF----VWNALIDMY 322
+L R ++ +PN+ T+ ++L LA+L G + +G V NALI MY
Sbjct: 399 NLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMY 458
Query: 323 GRCGAIQKSRKIFVLMP-HKNLVSWNVMI 350
+ G I + + F L+ ++ VSW MI
Sbjct: 459 AKAGNITSASRAFDLIRCERDTVSWTSMI 487
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 139/298 (46%), Gaps = 67/298 (22%)
Query: 106 LLDLFIKCGRMEITSGLFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKF-SKIKQKDLVS 163
L++++ K G LF+EM + N+++ Y+K R S C+F ++ Q+D VS
Sbjct: 55 LMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSK-RGDMDSTCEFFDQLPQRDSVS 113
Query: 164 WNAMLAGYA-LGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
W M+ GY +G + + + + D M++ ++P +L+ VLA+ A + ++ GK +H
Sbjct: 114 WTTMIVGYKNIGQYHKAIRVMGD---MVKEGIEPTQFTLTNVLASVAATRCMETGKKVHS 170
Query: 223 YV----LRHHIHLSTA-------CG------FVI-------------------------C 240
++ LR ++ +S + CG FV
Sbjct: 171 FIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDL 230
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALD----LLRDVIVANVKPNTVTIVSVLP 296
+ + F Q++ RD+V WNS+IS F + G + ALD +LRD +++ P+ T+ SVL
Sbjct: 231 AMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLS---PDRFTLASVLS 287
Query: 297 ACLKLAAL-----------PQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343
AC L L G V NALI MY RCG ++ +R++ K+L
Sbjct: 288 ACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDL 345
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 23/162 (14%)
Query: 215 KLGKAIHGYVLRHHIHLSTAC------------GFVICSCSVFNQLSTRDVVVWNSIISA 262
K G A+H L + L TA G + +C F+QL RD V W ++I
Sbjct: 61 KTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVG 120
Query: 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF--------- 313
+ GQ A+ ++ D++ ++P T+ +VL + + G SF
Sbjct: 121 YKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGN 180
Query: 314 --VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
V N+L++MY +CG ++ +F M +++ SWN MI+++
Sbjct: 181 VSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALH 222
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+WTSM+ G+ EE + LF M+ +G+RPDH V+ AC+ G+ +D M
Sbjct: 482 SWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMM 541
Query: 92 ISIK-----FEGNACVKRPLLDLFIKCGRMEITSGLFEEM--DQDFLVNNSLIDFYAKCR 144
+ AC ++DLF + G ++ E+M + D + SL+ + CR
Sbjct: 542 KDVDKIIPTLSHYAC----MVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLL---SACR 594
Query: 145 YLK 147
K
Sbjct: 595 VHK 597
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSR 332
L+L +++ +V + + L C + GL ++ N L+++Y + G +R
Sbjct: 13 LELCTNLLQKSVNKSNGRFTAQLVHC---RVIKSGLMFSVYLMNNLMNVYSKTGYALHAR 69
Query: 333 KIFVLMPHKNLVSWNVMISVY 353
K+F MP + SWN ++S Y
Sbjct: 70 KLFDEMPLRTAFSWNTVLSAY 90
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 132 bits (332), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 168/346 (48%), Gaps = 55/346 (15%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W S++ Y G E+ +++F M+ G+ D V+ C++ + +G+ V+
Sbjct: 263 SWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHS-- 320
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
I +K AC R D F N+L+D Y+KC L +
Sbjct: 321 IGVK----ACFSRE--DRFC----------------------NTLLDMYSKCGDLDSAKA 352
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ + +VS+ +M+AGYA G E L +EME + + P+ +++ VL CA+
Sbjct: 353 VFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEME--EEGISPDVYTVTAVLNCCARY 410
Query: 212 KGVKLGKAIHGYV----LRHHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSII 260
+ + GK +H ++ L I +S A CG + + VF+++ +D++ WN+II
Sbjct: 411 RLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTII 470
Query: 261 SAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPACLKLAALPQG-------LGTGS 312
+ ++ +AL L ++ P+ T+ VLPAC L+A +G + G
Sbjct: 471 GGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGY 530
Query: 313 F----VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
F V N+L+DMY +CGA+ + +F + K+LVSW VMI+ YG
Sbjct: 531 FSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYG 576
Score = 128 bits (322), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 85/343 (24%), Positives = 162/343 (47%), Gaps = 54/343 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W +M G + + LF M+ GV D + V K+ S L+ G+ ++ +++
Sbjct: 163 WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFIL 222
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
K G E S V NSL+ FY K + + +
Sbjct: 223 -------------------KSGFGERNS-----------VGNSLVAFYLKNQRVDSARKV 252
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ ++D++SWN+++ GY G E+ ++ ++M+ + ++ + ++ V A CA +
Sbjct: 253 FDEMTERDVISWNSIINGYVSNGLAEKGLSVF--VQMLVSGIEIDLATIVSVFAGCADSR 310
Query: 213 GVKLGKAIHGYVLR-----------HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+ LG+A+H ++ + + + CG + + +VF ++S R VV + S+I+
Sbjct: 311 LISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIA 370
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGT 310
+ R G +A+ L ++ + P+ T+ +VL C + L +G LG
Sbjct: 371 GYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGF 430
Query: 311 GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
FV NAL+DMY +CG++Q++ +F M K+++SWN +I Y
Sbjct: 431 DIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGY 473
Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 152/331 (45%), Gaps = 54/331 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
++TSM+ Y G E V LF M ++G+ PD + V C+ + GK V++++
Sbjct: 364 SYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWI 423
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
++ D V+N+L+D YAKC ++ +
Sbjct: 424 KE------------------------------NDLGFDIFVSNALMDMYAKCGSMQEAEL 453
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
FS+++ KD++SWN ++ GY+ + E +L + + + + P+ +++ VL ACA +
Sbjct: 454 VFSEMRVKDIISWNTIIGGYSKNCYANEALSLFN-LLLEEKRFSPDERTVACVLPACASL 512
Query: 212 KGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260
G+ IHGY++R+ + + CG ++ + +F+ ++++D+V W +I
Sbjct: 513 SAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMI 572
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------ 314
+ + G +A+ L + A ++ + ++ VS+L AC + +G + +
Sbjct: 573 AGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKI 632
Query: 315 ------WNALIDMYGRCGAIQKSRKIFVLMP 339
+ ++DM R G + K+ + MP
Sbjct: 633 EPTVEHYACIVDMLARTGDLIKAYRFIENMP 663
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 87/183 (47%), Gaps = 24/183 (13%)
Query: 193 DMQPNTISLSGVLAACAQVKGVKLGKAI------HGYVLRHHIH-----LSTACGFVICS 241
D+ P T L VL CA K +K GK + +G+V+ ++ + T CG + +
Sbjct: 91 DIDPRT--LCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEA 148
Query: 242 CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301
VF+++ + WN +++ +SG ++ L + ++ + V+ ++ T V + L
Sbjct: 149 SRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSL 208
Query: 302 AA-----------LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ L G G + V N+L+ Y + + +RK+F M ++++SWN +I
Sbjct: 209 RSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSII 268
Query: 351 SVY 353
+ Y
Sbjct: 269 NGY 271
>sp|Q9LR69|PPR8_ARATH Pentatricopeptide repeat-containing protein At1g03540
OS=Arabidopsis thaliana GN=PCMP-E4 PE=2 SV=1
Length = 609
Score = 132 bits (331), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 164/348 (47%), Gaps = 62/348 (17%)
Query: 28 EVFCNWTSMMGMYNVLGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKD 86
+V C WT+++ ++ YEE + LFY M KG+ PD V AC L+ + GK+
Sbjct: 228 DVIC-WTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKE 286
Query: 87 VYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL 146
++ +I T+G+ + +V +SL+D Y KC +
Sbjct: 287 IHGKLI--------------------------TNGI----GSNVVVESSLLDMYGKCGSV 316
Query: 147 KVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206
+ + F+ + +K+ VSW+A+L GY G E+ + EME + + VL
Sbjct: 317 REARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIFREME------EKDLYCFGTVLK 370
Query: 207 ACAQVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVV 255
ACA + V+LGK IHG +R I L G + + V++++S R+++
Sbjct: 371 ACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDSASRVYSKMSIRNMIT 430
Query: 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC------------LKLAA 303
WN+++SA ++G+ +A+ D++ +KP+ ++ +++L AC L A
Sbjct: 431 WNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISFIAILTACGHTGMVDEGRNYFVLMA 490
Query: 304 LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMI 350
G+ G+ ++ +ID+ GR G +++ + +N S W V++
Sbjct: 491 KSYGIKPGTEHYSCMIDLLGRAGLFEEAENLLERAECRNDASLWGVLL 538
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/393 (24%), Positives = 175/393 (44%), Gaps = 79/393 (20%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVF----------------------CNWTSMMGMYN 41
GIQ HAH++ G+E +G+ LL ++ +WTSMM Y
Sbjct: 80 GIQFHAHVVKSGLETDRNVGNSLLSLYFKLGPGMRETRRVFDGRFVKDAISWTSMMSGYV 139
Query: 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC 101
+ + + +F M+ G+ + F KACSEL + R+G+ + +I+ FE N
Sbjct: 140 TGKEHVKALEVFVEMVSFGLDANEFTLSSAVKACSELGEVRLGRCFHGVVITHGFEWNHF 199
Query: 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161
+ L L+ VN +D + F ++ + D+
Sbjct: 200 ISSTLAYLYG--------------------VNREPVD----------ARRVFDEMPEPDV 229
Query: 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221
+ W A+L+ ++ EE L M + + P+ + VL AC ++ +K GK IH
Sbjct: 230 ICWTAVLSAFSKNDLYEEALGLFYAMHRGK-GLVPDGSTFGTVLTACGNLRRLKQGKEIH 288
Query: 222 GYVLRHHI-----------HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
G ++ + I + CG V + VFN +S ++ V W++++ + ++G+
Sbjct: 289 GKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHE 348
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGSF----VWNALI 319
A+++ R++ + + +VL AC LAA+ G + G F V +ALI
Sbjct: 349 KAIEIFREM----EEKDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALI 404
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISV 352
D+YG+ G I + +++ M +N+++WN M+S
Sbjct: 405 DLYGKSGCIDSASRVYSKMSIRNMITWNAMLSA 437
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 131/252 (51%), Gaps = 26/252 (10%)
Query: 126 MDQDFLVNNSLIDFYAKC-RYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLL 184
++ D V NSL+ Y K ++ + F KD +SW +M++GY G +E V L
Sbjct: 92 LETDRNVGNSLLSLYFKLGPGMRETRRVFDGRFVKDAISWTSMMSGYVTG--KEHVKALE 149
Query: 185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH----LSTACGFV-- 238
+EM+ + N +LS + AC+++ V+LG+ HG V+ H +S+ ++
Sbjct: 150 VFVEMVSFGLDANEFTLSSAVKACSELGEVRLGRCFHGVVITHGFEWNHFISSTLAYLYG 209
Query: 239 -----ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIV 292
+ + VF+++ DV+ W +++SAF ++ +AL L + + P+ T
Sbjct: 210 VNREPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFG 269
Query: 293 SVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHK 341
+VL AC L L QG +G+ V ++L+DMYG+CG+++++R++F M K
Sbjct: 270 TVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKK 329
Query: 342 NLVSWNVMISVY 353
N VSW+ ++ Y
Sbjct: 330 NSVSWSALLGGY 341
Score = 35.4 bits (80), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA-----------LPQGLGTGSFVW 315
GQ+ +A+ +L + + S+L C K+ + + GL T V
Sbjct: 40 GQLTEAIRILNSTHSSEIPATPKLYASLLQTCNKVFSFIHGIQFHAHVVKSGLETDRNVG 99
Query: 316 NALIDMYGRCG-AIQKSRKIFVLMPHKNLVSWNVMISVY 353
N+L+ +Y + G ++++R++F K+ +SW M+S Y
Sbjct: 100 NSLLSLYFKLGPGMRETRRVFDGRFVKDAISWTSMMSGY 138
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 131 bits (330), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 94/379 (24%), Positives = 172/379 (45%), Gaps = 75/379 (19%)
Query: 5 IQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNVL 43
Q HAH++ G++ F+ + L+ + + WT+M+ +
Sbjct: 123 FQFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRN 182
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G E + F M GV + V KA +++D R G+ V+
Sbjct: 183 GSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHG-------------- 228
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
L+++ GR++ D + +SL+D Y KC + F ++ +++V+
Sbjct: 229 -----LYLETGRVKC----------DVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVT 273
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223
W A++AGY R +L EM+++D+ PN +LS VL+ACA V + G+ +H Y
Sbjct: 274 WTALIAGYVQS--RCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCY 331
Query: 224 VLRHHIHLSTACG------FVICSCS-----VFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
++++ I ++T G +V C C VF +L ++V W ++I+ F G DA
Sbjct: 332 MIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDA 391
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLG-----TGSFV-------WNALID 320
DL ++ ++V PN VT ++VL AC + +G G F + ++D
Sbjct: 392 FDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVD 451
Query: 321 MYGRCGAIQKSRKIFVLMP 339
++GR G +++++ + MP
Sbjct: 452 LFGRKGLLEEAKALIERMP 470
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 126/252 (50%), Gaps = 25/252 (9%)
Query: 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185
+D D V NSLI Y+ + F + KD+V+W AM+ G+ G E ++
Sbjct: 134 LDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEA--MVY 191
Query: 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH-------HIHLSTACGFV 238
+EM +T + N +++ VL A +V+ V+ G+++HG L I S +
Sbjct: 192 FVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYG 251
Query: 239 ICSC-----SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVS 293
CSC VF+++ +R+VV W ++I+ +V+S + + +++ ++V PN T+ S
Sbjct: 252 KCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSS 311
Query: 294 VLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342
VL AC + AL +G + + LID+Y +CG ++++ +F + KN
Sbjct: 312 VLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKN 371
Query: 343 LVSWNVMISVYG 354
+ +W MI+ +
Sbjct: 372 VYTWTAMINGFA 383
Score = 78.2 bits (191), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 99/212 (46%), Gaps = 22/212 (10%)
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG---------- 213
W++++ ++ G + L M + + P+ + +L A +++
Sbjct: 70 WDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRDSNPFQFHAHI 129
Query: 214 VKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273
VK G +V I ++ G + +F+ +DVV W ++I FVR+G +A+
Sbjct: 130 VKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAM 189
Query: 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGS-----FVWNALIDM 321
++ V N +T+VSVL A K+ + G L TG F+ ++L+DM
Sbjct: 190 VYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDM 249
Query: 322 YGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
YG+C ++K+F MP +N+V+W +I+ Y
Sbjct: 250 YGKCSCYDDAQKVFDEMPSRNVVTWTALIAGY 281
>sp|Q9FLX6|PP430_ARATH Pentatricopeptide repeat-containing protein At5g52850,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H31 PE=2
SV=1
Length = 893
Score = 131 bits (330), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 91/395 (23%), Positives = 174/395 (44%), Gaps = 76/395 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLG---------------- 44
+E G +H+++IV G+ L L + L++ + ++ M VL
Sbjct: 240 LEFGKTIHSNIIVRGIPLNVVLKTSLVDFYSQFSKMEDAVRVLNSSGEQDVFLWTSVVSG 299
Query: 45 -----YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+E V F M G++P++F + CS ++ GK ++ I + FE +
Sbjct: 300 FVRNLRAKEAVGTFLEMRSLGLQPNNFTYSAILSLCSAVRSLDFGKQIHSQTIKVGFEDS 359
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK-FSKIKQ 158
V N+L+D Y KC +V + F +
Sbjct: 360 TDV------------------------------GNALVDMYMKCSASEVEASRVFGAMVS 389
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
++VSW ++ G GF ++ LL MEM++ +++PN ++LSGVL AC++++ V+
Sbjct: 390 PNVVSWTTLILGLVDHGFVQDCFGLL--MEMVKREVEPNVVTLSGVLRACSKLRHVRRVL 447
Query: 219 AIHGYVLRHHIHLSTACGFVICSC-----------SVFNQLSTRDVVVWNSIISAFVRSG 267
IH Y+LR H+ G + +V + RD + + S+++ F G
Sbjct: 448 EIHAYLLRRHVDGEMVVGNSLVDAYASSRKVDYAWNVIRSMKRRDNITYTSLVTRFNELG 507
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWN 316
+ AL ++ + ++ + +++ + A L AL G + V N
Sbjct: 508 KHEMALSVINYMYGDGIRMDQLSLPGFISASANLGALETGKHLHCYSVKSGFSGAASVLN 567
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+L+DMY +CG+++ ++K+F + ++VSWN ++S
Sbjct: 568 SLVDMYSKCGSLEDAKKVFEEIATPDVVSWNGLVS 602
Score = 118 bits (295), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 86/341 (25%), Positives = 149/341 (43%), Gaps = 56/341 (16%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
WT M+ + + ++LF M+ G P+ F V ++C+ L+D G V+ +I
Sbjct: 92 WTVMISAFTKSQEFASALSLFEEMMASGTHPNEFTFSSVVRSCAGLRDISYGGRVHGSVI 151
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
FEGN+ V L DL+ KCG+ F C
Sbjct: 152 KTGFEGNSVVGSSLSDLYSKCGQ-----------------------FKEACEL------- 181
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
FS ++ D +SW M++ +L G R+ L EM++ + PN + +L A + +
Sbjct: 182 FSSLQNADTISWTMMIS--SLVGARKWREALQFYSEMVKAGVPPNEFTFVKLLGASSFL- 238
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVIC-----------SCSVFNQLSTRDVVVWNSIIS 261
G++ GK IH ++ I L+ + + V N +DV +W S++S
Sbjct: 239 GLEFGKTIHSNIIVRGIPLNVVLKTSLVDFYSQFSKMEDAVRVLNSSGEQDVFLWTSVVS 298
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL-----------PQGLGT 310
FVR+ + +A+ ++ ++PN T ++L C + +L G
Sbjct: 299 GFVRNLRAKEAVGTFLEMRSLGLQPNNFTYSAILSLCSAVRSLDFGKQIHSQTIKVGFED 358
Query: 311 GSFVWNALIDMYGRCGAIQ-KSRKIFVLMPHKNLVSWNVMI 350
+ V NAL+DMY +C A + ++ ++F M N+VSW +I
Sbjct: 359 STDVGNALVDMYMKCSASEVEASRVFGAMVSPNVVSWTTLI 399
Score = 94.7 bits (234), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 87/394 (22%), Positives = 162/394 (41%), Gaps = 77/394 (19%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G +VH +I G E + +GS L +++ +WT M+
Sbjct: 143 GGRVHGSVIKTGFEGNSVVGSSLSDLYSKCGQFKEACELFSSLQNADTISWTMMISSLVG 202
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
+ E + + M+ GV P+ F K+ A S L GK ++ +I N +
Sbjct: 203 ARKWREALQFYSEMVKAGVPPNEFTFVKLLGASSFL-GLEFGKTIHSNIIVRGIPLNVVL 261
Query: 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162
K L+D + + +ME D ++N+S ++D+
Sbjct: 262 KTSLVDFYSQFSKME---------DAVRVLNSS---------------------GEQDVF 291
Query: 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222
W ++++G+ +E +EM +QPN + S +L+ C+ V+ + GK IH
Sbjct: 292 LWTSVVSGFVRNLRAKEAVGTF--LEMRSLGLQPNNFTYSAILSLCSAVRSLDFGKQIHS 349
Query: 223 YVLRHHIHLSTACG------FVICSCS------VFNQLSTRDVVVWNSIISAFVRSGQVV 270
++ ST G ++ CS S VF + + +VV W ++I V G V
Sbjct: 350 QTIKVGFEDSTDVGNALVDMYMKCSASEVEASRVFGAMVSPNVVSWTTLILGLVDHGFVQ 409
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF-----------VWNALI 319
D LL +++ V+PN VT+ VL AC KL + + L ++ V N+L+
Sbjct: 410 DCFGLLMEMVKREVEPNVVTLSGVLRACSKLRHVRRVLEIHAYLLRRHVDGEMVVGNSLV 469
Query: 320 DMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
D Y + + + M ++ +++ +++ +
Sbjct: 470 DAYASSRKVDYAWNVIRSMKRRDNITYTSLVTRF 503
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/331 (20%), Positives = 145/331 (43%), Gaps = 65/331 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVF----------------------CNWTSMMG 38
++ G Q+H+ I G E +G+ L++++ +WT+++
Sbjct: 341 LDFGKQIHSQTIKVGFEDSTDVGNALVDMYMKCSASEVEASRVFGAMVSPNVVSWTTLIL 400
Query: 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98
G+ ++ L M+ + V P+ V +ACS+L+ R +++ Y+
Sbjct: 401 GLVDHGFVQDCFGLLMEMVKREVEPNVVTLSGVLRACSKLRHVRRVLEIHAYL------- 453
Query: 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158
L +D + +V NSL+D YA R + + +K+
Sbjct: 454 -----------------------LRRHVDGEMVVGNSLVDAYASSRKVDYAWNVIRSMKR 490
Query: 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218
+D +++ +++ + G E ++++ M ++ + +SL G ++A A + ++ GK
Sbjct: 491 RDNITYTSLVTRFNELGKHEMALSVINYM--YGDGIRMDQLSLPGFISASANLGALETGK 548
Query: 219 AIHGY-----------VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267
+H Y VL + + + CG + + VF +++T DVV WN ++S +G
Sbjct: 549 HLHCYSVKSGFSGAASVLNSLVDMYSKCGSLEDAKKVFEEIATPDVVSWNGLVSGLASNG 608
Query: 268 QVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ AL ++ + +P++VT + +L AC
Sbjct: 609 FISSALSAFEEMRMKETEPDSVTFLILLSAC 639
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/379 (21%), Positives = 152/379 (40%), Gaps = 103/379 (27%)
Query: 5 IQVHAHLIVCGVELCAFLGSQLLEVFCN---------------------WTSMMGMYNVL 43
+++HA+L+ V+ +G+ L++ + + +TS++ +N L
Sbjct: 447 LEIHAYLLRRHVDGEMVVGNSLVDAYASSRKVDYAWNVIRSMKRRDNITYTSLVTRFNEL 506
Query: 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK 103
G +E +++ M G+R D P A + L GK ++ Y + F G A V
Sbjct: 507 GKHEMALSVINYMYGDGIRMDQLSLPGFISASANLGALETGKHLHCYSVKSGFSGAASVL 566
Query: 104 RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS 163
NSL+D Y+KC L+ + F +I D+VS
Sbjct: 567 ------------------------------NSLVDMYSKCGSLEDAKKVFEEIATPDVVS 596
Query: 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG------ 217
WN +++G A GF + +EM M +T +P++++ +L+AC+ + LG
Sbjct: 597 WNGLVSGLASNGFISSALSAFEEMRMKET--EPDSVTFLILLSACSNGRLTDLGLEYFQV 654
Query: 218 -KAIHGY--VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALD 274
K I+ + H++HL G R+G++ +A
Sbjct: 655 MKKIYNIEPQVEHYVHLVGILG----------------------------RAGRLEEATG 686
Query: 275 LLRDVIVANVKPNTVTIVSVLPACLKLAALP-------QGLG---TGSFVWNALIDMYGR 324
++ + ++KPN + ++L AC L +GL + ++ L D+Y
Sbjct: 687 VVETM---HLKPNAMIFKTLLRACRYRGNLSLGEDMANKGLALAPSDPALYILLADLYDE 743
Query: 325 CGAIQKSRKIFVLMPHKNL 343
G + ++K LM K L
Sbjct: 744 SGKPELAQKTRNLMTEKRL 762
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 112/257 (43%), Gaps = 27/257 (10%)
Query: 118 ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFR 177
I GL E +D L NN L+ Y K + + F ++ + + +W M++ +
Sbjct: 50 IKFGLLENLD---LCNN-LLSLYLKTDGIWNARKLFDEMSHRTVFAWTVMISAFTKSQEF 105
Query: 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH------- 230
+L +EM + + PN + S V+ +CA ++ + G +HG V++
Sbjct: 106 ASALSLFEEM--MASGTHPNEFTFSSVVRSCAGLRDISYGGRVHGSVIKTGFEGNSVVGS 163
Query: 231 ----LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286
L + CG +C +F+ L D + W +IS+ V + + +AL +++ A V P
Sbjct: 164 SLSDLYSKCGQFKEACELFSSLQNADTISWTMMISSLVGARKWREALQFYSEMVKAGVPP 223
Query: 287 NTVTIVSVLPACLKLA----------ALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFV 336
N T V +L A L + +G+ + +L+D Y + ++ + ++
Sbjct: 224 NEFTFVKLLGASSFLGLEFGKTIHSNIIVRGIPLNVVLKTSLVDFYSQFSKMEDAVRVLN 283
Query: 337 LMPHKNLVSWNVMISVY 353
+++ W ++S +
Sbjct: 284 SSGEQDVFLWTSVVSGF 300
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 131 bits (329), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 158/346 (45%), Gaps = 60/346 (17%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
W +M+ Y Y E + +F +I++ R D + A +EL++ R+G ++
Sbjct: 188 WNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLA 247
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ V + L+ KCG++++ S LF E
Sbjct: 248 TKTGCYSHDYVLTGFISLYSKCGKIKMGSALFRE-------------------------- 281
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
++ D+V++NAM+ GY G E +L E+ + ++ +T L + V
Sbjct: 282 ----FRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSST------LVSLVPV 331
Query: 212 KG-VKLGKAIHGYVLR----HHIHLSTACGFVICSCS-------VFNQLSTRDVVVWNSI 259
G + L AIHGY L+ H +STA V + +F++ + + WN++
Sbjct: 332 SGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAM 391
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------L 308
IS + ++G DA+ L R++ + PN VTI +L AC +L AL G
Sbjct: 392 ISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDF 451
Query: 309 GTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ +V ALI MY +CG+I ++R++F LM KN V+WN MIS YG
Sbjct: 452 ESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYG 497
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 112/203 (55%), Gaps = 17/203 (8%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V+ +L Y+K ++ + F + +K L SWNAM++GY G E+ +L EM+ +
Sbjct: 356 VSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQ--K 413
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV----LRHHIHLSTA-------CGFVIC 240
++ PN ++++ +L+ACAQ+ + LGK +H V I++STA CG +
Sbjct: 414 SEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAE 473
Query: 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300
+ +F+ ++ ++ V WN++IS + GQ +AL++ +++ + + P VT + VL AC
Sbjct: 474 ARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSH 533
Query: 301 LAALPQGLGTGSFVWNALIDMYG 323
+ + G ++N++I YG
Sbjct: 534 AGLVKE----GDEIFNSMIHRYG 552
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 129/261 (49%), Gaps = 20/261 (7%)
Query: 112 KCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGY 171
+ GR+ + + D + L+ ++++ Y K ++ + F ++ +KD + WN M++GY
Sbjct: 136 RAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGY 195
Query: 172 ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG--------- 222
E + ++ + ++ + +T +L +L A A+++ ++LG IH
Sbjct: 196 RKNEMYVESIQVFRDL-INESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYS 254
Query: 223 --YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280
YVL I L + CG + ++F + D+V +N++I + +G+ +L L ++++
Sbjct: 255 HDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELM 314
Query: 281 VANVKPNTVTIVSVLPACLKLA--------ALPQGLGTGSFVWNALIDMYGRCGAIQKSR 332
++ + + T+VS++P L L + + V AL +Y + I+ +R
Sbjct: 315 LSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESAR 374
Query: 333 KIFVLMPHKNLVSWNVMISVY 353
K+F P K+L SWN MIS Y
Sbjct: 375 KLFDESPEKSLPSWNAMISGY 395
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 106/224 (47%), Gaps = 24/224 (10%)
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F +++ D+ +N ++ G+++ ++ + TD++PN+ + + ++A + +
Sbjct: 75 FLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRK-STDLKPNSSTYAFAISAASGFR 133
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVIC-----------SCSVFNQLSTRDVVVWNSIIS 261
+ G+ IHG + G I + VF+++ +D ++WN++IS
Sbjct: 134 DDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMIS 193
Query: 262 AFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPACLKLAALPQGLGTGS-------- 312
+ ++ V+++ + RD+I + + +T T++ +LPA +L L G+ S
Sbjct: 194 GYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCY 253
Query: 313 ---FVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+V I +Y +CG I+ +F ++V++N MI Y
Sbjct: 254 SHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGY 297
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 32/189 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G E+ ++LF M P+ + AC++L +GK V+D +
Sbjct: 387 SWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLV 446
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
S FE + V+ +LI YAKC + +
Sbjct: 447 RSTDFESS------------------------------IYVSTALIGMYAKCGSIAEARR 476
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F + +K+ V+WN M++GY L G +E N+ EM+ + + P ++ VL AC+
Sbjct: 477 LFDLMTKKNEVTWNTMISGYGLHGQGQEALNIF--YEMLNSGITPTPVTFLCVLYACSHA 534
Query: 212 KGVKLGKAI 220
VK G I
Sbjct: 535 GLVKEGDEI 543
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPD--HFVCPKVYKACSELKDYRVGKDVYD 89
W +M+ Y + G +E +N+FY M++ G+ P F+C V ACS + G ++++
Sbjct: 488 TWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLC--VLYACSHAGLVKEGDEIFN 545
Query: 90 YMI-SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126
MI FE + ++D+ + G ++ E M
Sbjct: 546 SMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAM 583
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 92/366 (25%), Positives = 172/366 (46%), Gaps = 44/366 (12%)
Query: 22 LGSQLLEVFCN------WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKAC 75
LG +LLE + + +M+ Y G+Y+E + + M+ G+ D F P V +AC
Sbjct: 237 LGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRAC 296
Query: 76 SELKDYRVGKDVYDYMI-----SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDF 130
+ ++GK V+ Y++ S F+ + L+ L+ KCG+ + +FE+M
Sbjct: 297 ATAGLLQLGKQVHAYVLRREDFSFHFDNS------LVSLYYKCGKFDEARAIFEKMPAKD 350
Query: 131 LVN-NSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189
LV+ N+L+ Y ++ + F ++K+K+++SW M++G A GF EE L M+
Sbjct: 351 LVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMK- 409
Query: 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR-----------HHIHLSTACGFV 238
+ +P + SG + +CA + G+ H +L+ I + CG V
Sbjct: 410 -REGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVV 468
Query: 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298
+ VF + D V WN++I+A + G +A+D+ +++ ++P+ +T+++VL AC
Sbjct: 469 EEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTAC 528
Query: 299 LKLAALPQG------------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVS- 345
+ QG + G+ + LID+ R G + + +P K
Sbjct: 529 SHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEI 588
Query: 346 WNVMIS 351
W ++S
Sbjct: 589 WEALLS 594
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/382 (22%), Positives = 160/382 (41%), Gaps = 79/382 (20%)
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
+N GY +NLF M +G +PD+F V + + D D ++F
Sbjct: 125 HNNDGY--SAINLFCKMKHEGFKPDNFTFASVLAGLALVAD--------DEKQCVQFHAA 174
Query: 100 A---------CVKRPLLDLFIKCGR----MEITSGLFEE-MDQDFLVNNSLIDFYAKCRY 145
A V L+ ++ KC + +F+E +++D +++ Y K Y
Sbjct: 175 ALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGY 234
Query: 146 LKVSHCKFSKIKQK-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGV 204
+ + LV++NAM++GY GF +E ++ M+ + ++ + + V
Sbjct: 235 FDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMV--RRMVSSGIELDEFTYPSV 292
Query: 205 LAACAQVKGVKLGKAIHGYVLRHH----------IHLSTACGFVICSCSVFNQLSTRDVV 254
+ ACA ++LGK +H YVLR + L CG + ++F ++ +D+V
Sbjct: 293 IRACATAGLLQLGKQVHAYVLRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLV 352
Query: 255 VWNSIISAFVRSGQVVDALDLLRDVIVANV------------------------------ 284
WN+++S +V SG + +A + +++ N+
Sbjct: 353 SWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREG 412
Query: 285 -KPNTVTIVSVLPACLKLAA-----------LPQGLGTGSFVWNALIDMYGRCGAIQKSR 332
+P + +C L A L G + NALI MY +CG ++++R
Sbjct: 413 FEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEAR 472
Query: 333 KIFVLMPHKNLVSWNVMISVYG 354
++F MP + VSWN +I+ G
Sbjct: 473 QVFRTMPCLDSVSWNALIAALG 494
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/338 (22%), Positives = 143/338 (42%), Gaps = 73/338 (21%)
Query: 82 RVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ-DFLVNNSLIDFY 140
++ + V+ +I+ F+ A + L+D++ K + LF+E+ + D + +++ Y
Sbjct: 31 QLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGY 90
Query: 141 AKCRYLKVSHCKFSKIK--QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT 198
+ ++ F K +D V +NAM+ G++ NL +M+ +P+
Sbjct: 91 CASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMK--HEGFKPDN 148
Query: 199 ISLSGVLAA----------CAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCS----- 243
+ + VLA C Q L K+ GY+ +S A V C+
Sbjct: 149 FTFASVLAGLALVADDEKQCVQFHAAAL-KSGAGYI----TSVSNALVSVYSKCASSPSL 203
Query: 244 ------VFNQLSTRD--------------------------------VVVWNSIISAFVR 265
VF+++ +D +V +N++IS +V
Sbjct: 204 LHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVN 263
Query: 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW---------- 315
G +AL+++R ++ + ++ + T SV+ AC L G ++V
Sbjct: 264 RGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFD 323
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
N+L+ +Y +CG ++R IF MP K+LVSWN ++S Y
Sbjct: 324 NSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGY 361
>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3
SV=1
Length = 544
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/331 (25%), Positives = 167/331 (50%), Gaps = 30/331 (9%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
+T+M+ + G + V+L++ MI V PD++V V KAC D +V ++++ ++
Sbjct: 95 YTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKAC----DLKVCREIHAQVL 150
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F + V +++++ K G + +F+EM D+D + +I+ Y++C ++K +
Sbjct: 151 KLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECGFIKEALE 210
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +K KD V W AM+ G + L EM+M ++ N + VL+AC+ +
Sbjct: 211 LFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQM--ENVSANEFTAVCVLSACSDL 268
Query: 212 KGVKLGKAIHGYVLRHHIHLS-----------TACGFVICSCSVFNQLSTRDVVVWNSII 260
++LG+ +H +V + LS + CG + + VF + +DV+ +N++I
Sbjct: 269 GALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMI 328
Query: 261 SAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGL---GTGSFVWNA 317
S G V+A++ RD++ +PN VT+V++L AC L GL + V+N
Sbjct: 329 SGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNV 388
Query: 318 ---------LIDMYGRCGAIQKSRKIFVLMP 339
++D+ GR G ++++ + +P
Sbjct: 389 EPQIEHYGCIVDLLGRVGRLEEAYRFIENIP 419
Score = 101 bits (251), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 123/278 (44%), Gaps = 59/278 (21%)
Query: 127 DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDE 186
DQD V LI + + ++ FS + ++ + AM+ G+ G + +L
Sbjct: 58 DQDAFVVFELIRVCSTLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHR 117
Query: 187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVL--------------------- 225
M I + P+ ++ VL AC +K+ + IH VL
Sbjct: 118 M--IHNSVLPDNYVITSVLKAC----DLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKS 171
Query: 226 ---------------RHHIHLS------TACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
R H+ + + CGF+ + +F + +D V W ++I V
Sbjct: 172 GELVNAKKMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLV 231
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP-----------QGLGTGSF 313
R+ ++ AL+L R++ + NV N T V VL AC L AL Q + +F
Sbjct: 232 RNKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNF 291
Query: 314 VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
V NALI+MY RCG I ++R++F +M K+++S+N MIS
Sbjct: 292 VGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMIS 329
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 88/184 (47%), Gaps = 21/184 (11%)
Query: 191 QTDMQPNTISLS------GVLAACAQVKGV-----KLGKAIH---GYVLRHHIHLSTACG 236
+ D NT+ LS VL +C + V K+ + H +V+ I + +
Sbjct: 16 RRDPDSNTLRLSRRKTLISVLRSCKNIAHVPSIHAKIIRTFHDQDAFVVFELIRVCSTLD 75
Query: 237 FVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296
V + VF+ +S +V ++ ++I FV SG+ D + L +I +V P+ I SVL
Sbjct: 76 SVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLK 135
Query: 297 AC-------LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVM 349
AC + L G G+ V ++++YG+ G + ++K+F MP ++ V+ VM
Sbjct: 136 ACDLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVM 195
Query: 350 ISVY 353
I+ Y
Sbjct: 196 INCY 199
Score = 38.9 bits (89), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 30/143 (20%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ELG VH+ + +EL F+G+ L+ ++ ++ +M+
Sbjct: 271 LELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISG 330
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM-----ISI 94
+ G E +N F M+++G RP+ + ACS +G +V++ M +
Sbjct: 331 LAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEP 390
Query: 95 KFEGNACVKRPLLDLFIKCGRME 117
+ E C+ +DL + GR+E
Sbjct: 391 QIEHYGCI----VDLLGRVGRLE 409
>sp|O65543|PP343_ARATH Pentatricopeptide repeat-containing protein At4g31070,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E7 PE=2
SV=2
Length = 624
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 136/254 (53%), Gaps = 25/254 (9%)
Query: 124 EEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNL 183
E M + L++ +L+D Y K + F +++ K+ VSW AM++G E +L
Sbjct: 190 ERMQESVLLSTALVDMYLKFDDHAAAFHVFDQMEVKNEVSWTAMISGCVANQNYEMGVDL 249
Query: 184 LDEMEMIQTDMQPNTISLSGVLAACAQVK-GVKLGKAIHGYVLRHHIH----LSTA---- 234
M+ + +++PN ++L VL AC ++ G L K IHG+ RH H L+ A
Sbjct: 250 FRAMQ--RENLRPNRVTLLSVLPACVELNYGSSLVKEIHGFSFRHGCHADERLTAAFMTM 307
Query: 235 ---CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI 291
CG V S +F RDVV+W+S+IS + +G + ++LL + ++ N+VT+
Sbjct: 308 YCRCGNVSLSRVLFETSKVRDVVMWSSMISGYAETGDCSEVMNLLNQMRKEGIEANSVTL 367
Query: 292 VSVLPAC-----LKLAA------LPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340
++++ AC L A+ L G + + NALIDMY +CG++ +R++F +
Sbjct: 368 LAIVSACTNSTLLSFASTVHSQILKCGFMSHILLGNALIDMYAKCGSLSAAREVFYELTE 427
Query: 341 KNLVSWNVMISVYG 354
K+LVSW+ MI+ YG
Sbjct: 428 KDLVSWSSMINAYG 441
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/345 (22%), Positives = 154/345 (44%), Gaps = 56/345 (16%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK-DYRVGKDVYDY 90
+WT+M+ YE V+LF M + +RP+ V AC EL + K+++ +
Sbjct: 229 SWTAMISGCVANQNYEMGVDLFRAMQRENLRPNRVTLLSVLPACVELNYGSSLVKEIHGF 288
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
+ + + ++ +CG + ++ LFE
Sbjct: 289 SFRHGCHADERLTAAFMTMYCRCGNVSLSRVLFETS------------------------ 324
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
K +D+V W++M++GYA G EV NLL++M + ++ N+++L +++AC
Sbjct: 325 ------KVRDVVMWSSMISGYAETGDCSEVMNLLNQMR--KEGIEANSVTLLAIVSACTN 376
Query: 211 VKGVKLGKAIHGYVLR----HHIHLSTA-------CGFVICSCSVFNQLSTRDVVVWNSI 259
+ +H +L+ HI L A CG + + VF +L+ +D+V W+S+
Sbjct: 377 STLLSFASTVHSQILKCGFMSHILLGNALIDMYAKCGSLSAAREVFYELTEKDLVSWSSM 436
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC--LKLAALPQGLGTGSFVWN- 316
I+A+ G +AL++ + +I + + + +++L AC L Q + T + ++
Sbjct: 437 INAYGLHGHGSEALEIFKGMIKGGHEVDDMAFLAILSACNHAGLVEEAQTIFTQAGKYHM 496
Query: 317 --------ALIDMYGRCGAIQKSRKIFVLMPHKNLVS-WNVMISV 352
I++ GR G I + ++ + MP K W+ ++S
Sbjct: 497 PVTLEHYACYINLLGRFGKIDDAFEVTINMPMKPSARIWSSLLSA 541
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 105/266 (39%), Gaps = 55/266 (20%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W+SM+ Y G E++NL M +G+ + + AC+ V+ ++
Sbjct: 332 WSSMISGYAETGDCSEVMNLLNQMRKEGIEANSVTLLAIVSACTNSTLLSFASTVHSQIL 391
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
KCG M L+ N+LID YAKC L +
Sbjct: 392 -------------------KCGFM-----------SHILLGNALIDMYAKCGSLSAAREV 421
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
F ++ +KDLVSW++M+ Y L G E + MI+ + + ++ +L+AC
Sbjct: 422 FYELTEKDLVSWSSMINAYGLHGHGSEALEIFK--GMIKGGHEVDDMAFLAILSACNHAG 479
Query: 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272
V+ + I ++H+ ++ + + I+ R G++ DA
Sbjct: 480 LVEEAQTIFTQAGKYHMPVT--------------------LEHYACYINLLGRFGKIDDA 519
Query: 273 LDLLRDVIVANVKPNTVTIVSVLPAC 298
++ I +KP+ S+L AC
Sbjct: 520 FEV---TINMPMKPSARIWSSLLSAC 542
>sp|Q9LRV2|PP256_ARATH Pentatricopeptide repeat-containing protein At3g26540
OS=Arabidopsis thaliana GN=PCMP-A5 PE=2 SV=1
Length = 700
Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 162/344 (47%), Gaps = 29/344 (8%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W ++ Y +G+ +E V +F+ M++ VRP + V ACS VGK ++
Sbjct: 230 SWNVIVRRYLEMGFNDEAVVMFFKMLELNVRPLNHTVSSVMLACSRSLALEVGKVIHAIA 289
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSH 150
+ + + V + D+++KC R+E +F++ +D S + YA + +
Sbjct: 290 VKLSVVADTVVSTSVFDMYVKCDRLESARRVFDQTRSKDLKSWTSAMSGYAMSGLTREAR 349
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP-NTISLSGVLAACA 209
F + ++++VSWNAML GY E LD + +++ +++ + ++L +L C+
Sbjct: 350 ELFDLMPERNIVSWNAMLGGYVHA---HEWDEALDFLTLMRQEIENIDNVTLVWILNVCS 406
Query: 210 QVKGVKLGKAIHGYVLRHH-----------IHLSTACGFVICSCSVFNQLST-RDVVVWN 257
+ V++GK HG++ RH + + CG + + F Q+S RD V WN
Sbjct: 407 GISDVQMGKQAHGFIYRHGYDTNVIVANALLDMYGKCGTLQSANIWFRQMSELRDEVSWN 466
Query: 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSF---- 313
++++ R G+ AL + V KP+ T+ ++L C + AL G F
Sbjct: 467 ALLTGVARVGRSEQALSFFEGMQV-EAKPSKYTLATLLAGCANIPALNLGKAIHGFLIRD 525
Query: 314 -------VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
+ A++DMY +C + ++F ++L+ WN +I
Sbjct: 526 GYKIDVVIRGAMVDMYSKCRCFDYAIEVFKEAATRDLILWNSII 569
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 153/332 (46%), Gaps = 57/332 (17%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+G Y ++E ++ LM + D+ + CS + D ++GK + ++
Sbjct: 362 SWNAMLGGYVHAHEWDEALDFLTLMRQEIENIDNVTLVWILNVCSGISDVQMGKQAHGFI 421
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ D + +V N+L+D Y KC L+ ++
Sbjct: 422 YRHGY------------------------------DTNVIVANALLDMYGKCGTLQSANI 451
Query: 152 KFSKIKQ-KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F ++ + +D VSWNA+L G A G E+ + + M Q + +P+ +L+ +LA CA
Sbjct: 452 WFRQMSELRDEVSWNALLTGVARVGRSEQALSFFEGM---QVEAKPSKYTLATLLAGCAN 508
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACG------FVICSC-----SVFNQLSTRDVVVWNSI 259
+ + LGKAIHG+++R + + C C VF + +TRD+++WNSI
Sbjct: 509 IPALNLGKAIHGFLIRDGYKIDVVIRGAMVDMYSKCRCFDYAIEVFKEAATRDLILWNSI 568
Query: 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV----- 314
I R+G+ + +L + VKP+ VT + +L AC++ + G S +
Sbjct: 569 IRGCCRNGRSKEVFELFMLLENEGVKPDHVTFLGILQACIREGHVELGFQYFSSMSTKYH 628
Query: 315 -------WNALIDMYGRCGAIQKSRKIFVLMP 339
++ +I++Y + G + + + +LMP
Sbjct: 629 ISPQVEHYDCMIELYCKYGCLHQLEEFLLLMP 660
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/374 (21%), Positives = 154/374 (41%), Gaps = 86/374 (22%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +++ G +E+ +F M GVR V K+C + D R+ + ++ +
Sbjct: 129 SWNAVITACAQNGVSDEVFRMFRRMNRDGVRATETSFAGVLKSCGLILDLRLLRQLHCAV 188
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ + GN +DL S++D Y KCR + +
Sbjct: 189 VKYGYSGN-------VDL-----------------------ETSIVDVYGKCRVMSDARR 218
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F +I VSWN ++ Y GF +E + +M++ +++P ++S V+ AC++
Sbjct: 219 VFDEIVNPSDVSWNVIVRRYLEMGFNDEAVVMF--FKMLELNVRPLNHTVSSVMLACSRS 276
Query: 212 KGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSII 260
+++GK IH ++ + T C + + VF+Q ++D+ W S +
Sbjct: 277 LALEVGKVIHAIAVKLSVVADTVVSTSVFDMYVKCDRLESARRVFDQTRSKDLKSWTSAM 336
Query: 261 SAFVRSGQVVDALDLL-----RDVIVANV--------------------------KPNTV 289
S + SG +A +L R+++ N + V
Sbjct: 337 SGYAMSGLTREARELFDLMPERNIVSWNAMLGGYVHAHEWDEALDFLTLMRQEIENIDNV 396
Query: 290 TIVSVLPACLKLAALPQGLGTGSFVW-----------NALIDMYGRCGAIQKSRKIFVLM 338
T+V +L C ++ + G F++ NAL+DMYG+CG +Q + F M
Sbjct: 397 TLVWILNVCSGISDVQMGKQAHGFIYRHGYDTNVIVANALLDMYGKCGTLQSANIWFRQM 456
Query: 339 PH-KNLVSWNVMIS 351
++ VSWN +++
Sbjct: 457 SELRDEVSWNALLT 470
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 120/254 (47%), Gaps = 25/254 (9%)
Query: 123 FEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTN 182
F + FL+N + I+ Y KC + + F ++ ++D SWNA++ A G +EV
Sbjct: 90 FSPLPPIFLLNRA-IEAYGKCGCVDDARELFEEMPERDGGSWNAVITACAQNGVSDEVFR 148
Query: 183 LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH----HIHLSTACGFV 238
+ M + ++ S +GVL +C + ++L + +H V+++ ++ L T+ V
Sbjct: 149 MFRRMN--RDGVRATETSFAGVLKSCGLILDLRLLRQLHCAVVKYGYSGNVDLETSIVDV 206
Query: 239 ICSCSV-------FNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI 291
C V F+++ V WN I+ ++ G +A+ + ++ NV+P T+
Sbjct: 207 YGKCRVMSDARRVFDEIVNPSDVSWNVIVRRYLEMGFNDEAVVMFFKMLELNVRPLNHTV 266
Query: 292 VSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340
SV+ AC + AL G + + V ++ DMY +C ++ +R++F
Sbjct: 267 SSVMLACSRSLALEVGKVIHAIAVKLSVVADTVVSTSVFDMYVKCDRLESARRVFDQTRS 326
Query: 341 KNLVSWNVMISVYG 354
K+L SW +S Y
Sbjct: 327 KDLKSWTSAMSGYA 340
>sp|Q9M9R6|PPR43_ARATH Pentatricopeptide repeat-containing protein At1g14470
OS=Arabidopsis thaliana GN=PCMP-A4 PE=2 SV=2
Length = 540
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 152/305 (49%), Gaps = 14/305 (4%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+W +M+ Y G+ E+ + LF M+ GVRP+ V ACS D + + + +
Sbjct: 231 SWNAMLSGYAQNGFTEDALRLFNDMLRLGVRPNETTWVIVISACSFRADPSLTRSLVKLI 290
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM--DQDFLVNNSLIDFYAKCRYLKVS 149
+ N VK LLD+ KC ++ +F E+ ++ + N++I Y + + +
Sbjct: 291 DEKRVRLNCFVKTALLDMHAKCRDIQSARRIFNELGTQRNLVTWNAMISGYTRIGDMSSA 350
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F + ++++VSWN+++AGYA G ++M + D +P+ +++ VL+AC
Sbjct: 351 RQLFDTMPKRNVVSWNSLIAGYAHNGQAALAIEFFEDM-IDYGDSKPDEVTMISVLSACG 409
Query: 210 QVKGVKLGKAIHGYVLRHHIHLSTAC-----------GFVICSCSVFNQLSTRDVVVWNS 258
+ ++LG I Y+ ++ I L+ + G + + VF+++ RDVV +N+
Sbjct: 410 HMADLELGDCIVDYIRKNQIKLNDSGYRSLIFMYARGGNLWEAKRVFDEMKERDVVSYNT 469
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNAL 318
+ +AF +G V+ L+LL + ++P+ VT SVL AC + L +G + N L
Sbjct: 470 LFTAFAANGDGVETLNLLSKMKDEGIEPDRVTYTSVLTACNRAGLLKEGQRIFKSIRNPL 529
Query: 319 IDMYG 323
D Y
Sbjct: 530 ADHYA 534
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 88/408 (21%), Positives = 175/408 (42%), Gaps = 94/408 (23%)
Query: 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS 93
SM ++ + +++ L+ G+ PD F P V K+ R G +
Sbjct: 75 NSMFKYFSKMDMANDVLRLYEQRSRCGIMPDAFSFPVVIKSAG-----RFGILFQALVEK 129
Query: 94 IKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ------------------------- 128
+ F + V+ ++D+++K +E +F+++ Q
Sbjct: 130 LGFFKDPYVRNVIMDMYVKHESVESARKVFDQISQRKGSDWNVMISGYWKWGNKEEACKL 189
Query: 129 -DFLVNNSLIDF------YAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVT 181
D + N ++ + +AK + L+ + F ++ +K +VSWNAML+GYA GF E+
Sbjct: 190 FDMMPENDVVSWTVMITGFAKVKDLENARKYFDRMPEKSVVSWNAMLSGYAQNGFTEDAL 249
Query: 182 NLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS--------- 232
L + +M++ ++PN + V++AC+ L +++ + + L+
Sbjct: 250 RLFN--DMLRLGVRPNETTWVIVISACSFRADPSLTRSLVKLIDEKRVRLNCFVKTALLD 307
Query: 233 --TACGFVICSCSVFNQLST--------------------------------RDVVVWNS 258
C + + +FN+L T R+VV WNS
Sbjct: 308 MHAKCRDIQSARRIFNELGTQRNLVTWNAMISGYTRIGDMSSARQLFDTMPKRNVVSWNS 367
Query: 259 IISAFVRSGQVVDALDLLRDVI-VANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV--- 314
+I+ + +GQ A++ D+I + KP+ VT++SVL AC +A L G ++
Sbjct: 368 LIAGYAHNGQAALAIEFFEDMIDYGDSKPDEVTMISVLSACGHMADLELGDCIVDYIRKN 427
Query: 315 --------WNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ +LI MY R G + +++++F M +++VS+N + + +
Sbjct: 428 QIKLNDSGYRSLIFMYARGGNLWEAKRVFDEMKERDVVSYNTLFTAFA 475
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650
OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 90/397 (22%), Positives = 175/397 (44%), Gaps = 77/397 (19%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGM 39
+ELG Q+H+ +I +L A++ S L++++ +WT+M+
Sbjct: 506 LELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAG 565
Query: 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
Y + ++ + F M+D+G+R D AC+ L+ + G+ ++
Sbjct: 566 YTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIH---------AQ 616
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
ACV SG D N+L+ Y++C ++ S+ F + +
Sbjct: 617 ACV-----------------SGF----SSDLPFQNALVTLYSRCGKIEESYLAFEQTEAG 655
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
D ++WNA+++G+ G EE + + M + + N + + A ++ +K GK
Sbjct: 656 DNIAWNALVSGFQQSGNNEEALRVF--VRMNREGIDNNNFTFGSAVKAASETANMKQGKQ 713
Query: 220 IHGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268
+H + + I + CG + + F ++ST++ V WN+II+A+ + G
Sbjct: 714 VHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGF 773
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ------------GLGTGSFVWN 316
+ALD +I +NV+PN VT+V VL AC + + + GL +
Sbjct: 774 GSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYV 833
Query: 317 ALIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMISV 352
++DM R G + ++++ MP K + + W ++S
Sbjct: 834 CVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSA 870
Score = 124 bits (312), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 150/343 (43%), Gaps = 54/343 (15%)
Query: 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92
W M+ Y +L +F M + + P+ + P + K C L D +G+ ++ +I
Sbjct: 458 WNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQII 517
Query: 93 SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCK 152
F+ NA V L+D++ K G+++ D L+
Sbjct: 518 KTNFQLNAYVCSVLIDMYAKLGKLDTA--------WDILI-------------------- 549
Query: 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212
+ KD+VSW M+AGY F ++ L +M+ ++ + + L+ ++ACA ++
Sbjct: 550 --RFAGKDVVSWTTMIAGYTQYNFDDKA--LTTFRQMLDRGIRSDEVGLTNAVSACAGLQ 605
Query: 213 GVKLGKAIHGYV-----------LRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261
+K G+ IH + L + CG + S F Q D + WN+++S
Sbjct: 606 ALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVS 665
Query: 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTG--- 311
F +SG +AL + + + N T S + A + A + QG TG
Sbjct: 666 GFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDS 725
Query: 312 -SFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+ V NALI MY +CG+I + K F+ + KN VSWN +I+ Y
Sbjct: 726 ETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAY 768
Score = 104 bits (260), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 81/347 (23%), Positives = 157/347 (45%), Gaps = 59/347 (17%)
Query: 33 WTSM---MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89
W M + N++G E+ LF M+ + V P+ V +AC R G +D
Sbjct: 154 WNKMIKELASRNLIG---EVFGLFVRMVSENVTPNEGTFSGVLEAC------RGGSVAFD 204
Query: 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS 149
+ I R+ L++ + +V N LID Y++ ++ ++
Sbjct: 205 VVEQIH------------------ARI-----LYQGLRDSTVVCNPLIDLYSRNGFVDLA 241
Query: 150 HCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209
F ++ KD SW AM++G + E L +M ++ + P + S VL+AC
Sbjct: 242 RRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVL--GIMPTPYAFSSVLSACK 299
Query: 210 QVKGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNS 258
+++ +++G+ +HG VL+ T G +I + +F+ +S RD V +N+
Sbjct: 300 KIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNT 359
Query: 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC-----------LKLAALPQG 307
+I+ + G A++L + + + ++P++ T+ S++ AC L G
Sbjct: 360 LINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLG 419
Query: 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+ + + AL+++Y +C I+ + F+ +N+V WNVM+ YG
Sbjct: 420 FASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYG 466
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 82/396 (20%), Positives = 165/396 (41%), Gaps = 75/396 (18%)
Query: 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMG--------------MYNVL--- 43
+E+G Q+H ++ G ++ + L+ ++ + +++ YN L
Sbjct: 304 LEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLING 363
Query: 44 ----GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99
GY E+ + LF M G+ PD + ACS G+ ++ Y + F N
Sbjct: 364 LSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASN 423
Query: 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK 159
++ LL+L+ KC +E + +D+ F + + +
Sbjct: 424 NKIEGALLNLYAKCADIE-----------------TALDY-------------FLETEVE 453
Query: 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219
++V WN ML Y L + +M++ ++ PN + +L C ++ ++LG+
Sbjct: 454 NVVLWNVMLVAYGLLDDLRNSFRIFRQMQI--EEIVPNQYTYPSILKTCIRLGDLELGEQ 511
Query: 220 IHGYVLRHHIHLST-ACGFVICSCSVFNQLST----------RDVVVWNSIISAFVRSGQ 268
IH +++ + L+ C +I + +L T +DVV W ++I+ + +
Sbjct: 512 IHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNF 571
Query: 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ-----------GLGTGSFVWNA 317
AL R ++ ++ + V + + + AC L AL + G + NA
Sbjct: 572 DDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNA 631
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
L+ +Y RCG I++S F + ++WN ++S +
Sbjct: 632 LVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGF 667
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/318 (22%), Positives = 130/318 (40%), Gaps = 56/318 (17%)
Query: 58 DKGVRPDHFVCPKVYKACSELK-DYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM 116
++G+RP+H + + C + G+ ++ ++ + + N C+ L D ++ G +
Sbjct: 77 NRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDL 136
Query: 117 EITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGF 176
+F+EM ++ + +WN M+ A
Sbjct: 137 YGAFKVFDEM------------------------------PERTIFTWNKMIKELASRNL 166
Query: 177 REEVTNLLDEMEMIQTDMQPNTISLSGVLAAC-AQVKGVKLGKAIHGYVLRHHIHLSTAC 235
EV L + M+ ++ PN + SGVL AC + + IH +L + ST
Sbjct: 167 IGEVFGLF--VRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVV 224
Query: 236 -----------GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV 284
GFV + VF+ L +D W ++IS ++ +A+ L D+ V +
Sbjct: 225 CNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGI 284
Query: 285 KPNTVTIVSVLPACLKLAALP-----------QGLGTGSFVWNALIDMYGRCGAIQKSRK 333
P SVL AC K+ +L G + ++V NAL+ +Y G + +
Sbjct: 285 MPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEH 344
Query: 334 IFVLMPHKNLVSWNVMIS 351
IF M ++ V++N +I+
Sbjct: 345 IFSNMSQRDAVTYNTLIN 362
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/395 (21%), Positives = 170/395 (43%), Gaps = 77/395 (19%)
Query: 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMY 40
+LGI +H+ ++ CG + LL ++ WT++ Y
Sbjct: 128 KLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGY 187
Query: 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100
G + E ++LF M++ GV+PD + +V AC + D G+ + YM +
Sbjct: 188 TTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEM------ 241
Query: 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD 160
EM ++ V +L++ YAKC ++ + F + +KD
Sbjct: 242 ------------------------EMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKD 277
Query: 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220
+V+W+ M+ GYA F +E L ++M+Q +++P+ S+ G L++CA + + LG+
Sbjct: 278 IVTWSTMIQGYASNSFPKEGIELF--LQMLQENLKPDQFSIVGFLSSCASLGALDLGEWG 335
Query: 221 HGYVLRHH-----------IHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269
+ RH I + CG + VF ++ +D+V+ N+ IS ++G V
Sbjct: 336 ISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHV 395
Query: 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV------------WNA 317
+ + + P+ T + +L C+ + GL + + +
Sbjct: 396 KLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGC 455
Query: 318 LIDMYGRCGAIQKSRKIFVLMPHK-NLVSWNVMIS 351
++D++GR G + + ++ MP + N + W ++S
Sbjct: 456 MVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLS 490
Score = 121 bits (304), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 148/328 (45%), Gaps = 54/328 (16%)
Query: 46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP 105
+ E ++LF + G+ F P V KAC+ ++G D++
Sbjct: 92 FHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHS---------------- 135
Query: 106 LLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWN 165
L +KCG + D SL+ Y+ L +H F +I + +V+W
Sbjct: 136 ---LVVKCG-----------FNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWT 181
Query: 166 AMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI----- 220
A+ +GY G E +L +M ++ ++P++ + VL+AC V + G+ I
Sbjct: 182 ALFSGYTTSGRHREAIDLFKKM--VEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYME 239
Query: 221 ------HGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALD 274
+ +V ++L CG + + SVF+ + +D+V W+++I + + + ++
Sbjct: 240 EMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIE 299
Query: 275 LLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYG 323
L ++ N+KP+ +IV L +C L AL G T F+ NALIDMY
Sbjct: 300 LFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYA 359
Query: 324 RCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
+CGA+ + ++F M K++V N IS
Sbjct: 360 KCGAMARGFEVFKEMKEKDIVIMNAAIS 387
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 118/248 (47%), Gaps = 29/248 (11%)
Query: 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188
+ L+ +L K YL SH +F I +N+++ G+ E +L +
Sbjct: 49 NLLLKRTLFFRQTKYSYLLFSHTQFPNI-----FLYNSLINGFVNNHLFHETLDLF--LS 101
Query: 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR----HHIHLSTA-------CGF 237
+ + + + + VL AC + KLG +H V++ H + T+ G
Sbjct: 102 IRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGR 161
Query: 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297
+ + +F+++ R VV W ++ S + SG+ +A+DL + ++ VKP++ IV VL A
Sbjct: 162 LNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSA 221
Query: 298 CLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346
C+ + L G + SFV L+++Y +CG ++K+R +F M K++V+W
Sbjct: 222 CVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTW 281
Query: 347 NVMISVYG 354
+ MI Y
Sbjct: 282 STMIQGYA 289
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 69/158 (43%), Gaps = 22/158 (13%)
Query: 218 KAIHGYVLRHHIHLSTACGFVIC-----------SCSVFNQLSTRDVVVWNSIISAFVRS 266
K IH ++ HH+H T ++ S +F+ ++ ++NS+I+ FV +
Sbjct: 30 KQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLINGFVNN 89
Query: 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFV-----------W 315
+ LDL + + + T VL AC + ++ G+ S V
Sbjct: 90 HLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAM 149
Query: 316 NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVY 353
+L+ +Y G + + K+F +P +++V+W + S Y
Sbjct: 150 TSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGY 187
>sp|Q4V389|PPR55_ARATH Pentatricopeptide repeat-containing protein At1g22830
OS=Arabidopsis thaliana GN=PCMP-E24 PE=2 SV=1
Length = 703
Score = 128 bits (322), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 97/402 (24%), Positives = 186/402 (46%), Gaps = 53/402 (13%)
Query: 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNV 42
G Q+HAH I G+E + L +L+ + W ++G Y
Sbjct: 102 GQQLHAHCISSGLEFDSVLVPKLVTFYSAFNLLDEAQTITENSEILHPLPWNVLIGSYIR 161
Query: 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102
++E V+++ M+ KG+R D F P V KAC+ L D+ G+ V+ + N V
Sbjct: 162 NKRFQESVSVYKRMMSKGIRADEFTYPSVIKACAALLDFAYGRVVHGSIEVSSHRCNLYV 221
Query: 103 KRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK---- 157
L+ ++ + G++++ LF+ M ++D + N++I+ Y L + ++
Sbjct: 222 CNALISMYKRFGKVDVARRLFDRMSERDAVSWNAIINCYTSEEKLGEAFKLLDRMYLSGV 281
Query: 158 QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217
+ +V+WN + G G N + + M +++ ++++ L AC+ + +K G
Sbjct: 282 EASIVTWNTIAGGCLEAGNYIGALNCV--VGMRNCNVRIGSVAMINGLKACSHIGALKWG 339
Query: 218 KAIHGYVLR-----HHIH--------LSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
K H V+R H I + + C + + VF Q+ + WNSIIS F
Sbjct: 340 KVFHCLVIRSCSFSHDIDNVRNSLITMYSRCSDLRHAFIVFQQVEANSLSTWNSIISGFA 399
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------LGTGSF---- 313
+ + + LL++++++ PN +T+ S+LP ++ L G L S+
Sbjct: 400 YNERSEETSFLLKEMLLSGFHPNHITLASILPLFARVGNLQHGKEFHCYILRRQSYKDCL 459
Query: 314 -VWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMISVYG 354
+WN+L+DMY + G I ++++F M ++ V++ +I YG
Sbjct: 460 ILWNSLVDMYAKSGEIIAAKRVFDSMRKRDKVTYTSLIDGYG 501
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 120/234 (51%), Gaps = 26/234 (11%)
Query: 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191
V NSLI Y++C L+ + F +++ L +WN++++G+A EE + LL EM +
Sbjct: 359 VRNSLITMYSRCSDLRHAFIVFQQVEANSLSTWNSIISGFAYNERSEETSFLLKEM--LL 416
Query: 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH------------IHLSTACGFVI 239
+ PN I+L+ +L A+V ++ GK H Y+LR + + G +I
Sbjct: 417 SGFHPNHITLASILPLFARVGNLQHGKEFHCYILRRQSYKDCLILWNSLVDMYAKSGEII 476
Query: 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299
+ VF+ + RD V + S+I + R G+ AL +D+ + +KP+ VT+V+VL AC
Sbjct: 477 AAKRVFDSMRKRDKVTYTSLIDGYGRLGKGEVALAWFKDMDRSGIKPDHVTMVAVLSACS 536
Query: 300 KLAALPQGLGTGSFV------------WNALIDMYGRCGAIQKSRKIFVLMPHK 341
+ +G + + ++ ++D+Y R G + K+R IF +P++
Sbjct: 537 HSNLVREGHWLFTKMEHVFGIRLRLEHYSCMVDLYCRAGYLDKARDIFHTIPYE 590
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
+TS++ Y LG E + F M G++PDH V ACS R G ++ M
Sbjct: 492 TYTSLIDGYGRLGKGEVALAWFKDMDRSGIKPDHVTMVAVLSACSHSNLVREGHWLFTKM 551
Query: 92 -----ISIKFEGNACVKRPLLDLFIKCGRMEITSGLF 123
I ++ E +C ++DL+ + G ++ +F
Sbjct: 552 EHVFGIRLRLEHYSC----MVDLYCRAGYLDKARDIF 584
>sp|Q9SZK1|PP355_ARATH Pentatricopeptide repeat-containing protein At4g38010
OS=Arabidopsis thaliana GN=PCMP-E45 PE=3 SV=1
Length = 559
Score = 128 bits (322), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 152/344 (44%), Gaps = 62/344 (18%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91
++ +++ Y V + + + G PD F P V+KAC + R GK ++ +
Sbjct: 73 SYNTLLSSYAVCDKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGIV 132
Query: 92 ISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151
+ F D V NSL+ FY C + +
Sbjct: 133 TKMGFY------------------------------DDIYVQNSLVHFYGVCGESRNACK 162
Query: 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211
F ++ +D+VSW ++ G+ G +E + +M D++PN + VL + +V
Sbjct: 163 VFGEMPVRDVVSWTGIITGFTRTGLYKEALDTFSKM-----DVEPNLATYVCVLVSSGRV 217
Query: 212 KGVKLGKAIHGYVLRHHIHLSTACG------FVIC-----SCSVFNQLSTRDVVVWNSII 260
+ LGK IHG +L+ +S G +V C + VF +L +D V WNS+I
Sbjct: 218 GCLSLGKGIHGLILKRASLISLETGNALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMI 277
Query: 261 SAFV---RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTG 311
S V RS + +D L++ + +KP+ + SVL AC L A+ G + T
Sbjct: 278 SGLVHCERSKEAIDLFSLMQ--TSSGIKPDGHILTSVLSACASLGAVDHGRWVHEYILTA 335
Query: 312 SFVWN-----ALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMI 350
W+ A++DMY +CG I+ + +IF + KN+ +WN ++
Sbjct: 336 GIKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNVFTWNALL 379
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 124/278 (44%), Gaps = 34/278 (12%)
Query: 103 KRPLLDLFIKCGRMEI-----TSGLFEEMDQDFLVNNSLIDFYAK-CRYLKVSHCKFSKI 156
K LL+L +C + + T + ++ +D L+ N ++ F K + S I
Sbjct: 6 KSVLLELISRCSSLRVFKQIQTQLITRDLLRDDLIINKVVTFLGKSADFASYSSVILHSI 65
Query: 157 KQK-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215
+ S+N +L+ YA+ + VT + + P+ + V AC + G++
Sbjct: 66 RSVLSSFSYNTLLSSYAVCD-KPRVT-IFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIR 123
Query: 216 LGKAIHG-----------YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264
GK IHG YV +H CG +C VF ++ RDVV W II+ F
Sbjct: 124 EGKQIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFT 183
Query: 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVW--------- 315
R+G +ALD + +V+PN T V VL + ++ L G G +
Sbjct: 184 RTGLYKEALDTFSKM---DVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLE 240
Query: 316 --NALIDMYGRCGAIQKSRKIFVLMPHKNLVSWNVMIS 351
NALIDMY +C + + ++F + K+ VSWN MIS
Sbjct: 241 TGNALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMIS 278
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 117/274 (42%), Gaps = 54/274 (19%)
Query: 32 NWTSMMGMYNVLGYYEEIVNLFYLM-IDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDY 90
+W SM+ +E ++LF LM G++PD + V AC+ L G+ V++Y
Sbjct: 272 SWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHILTSVLSACASLGAVDHGRWVHEY 331
Query: 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150
++ T+G+ D + +++D YAKC Y++ +
Sbjct: 332 IL--------------------------TAGI----KWDTHIGTAIVDMYAKCGYIETAL 361
Query: 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210
F+ I+ K++ +WNA+L G A+ G E + EM++ +PN ++ L AC
Sbjct: 362 EIFNGIRSKNVFTWNALLGGLAIHGHGLESLRYFE--EMVKLGFKPNLVTFLAALNACCH 419
Query: 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270
V G R + H + + ++F +L + +I R+G +
Sbjct: 420 TGLVDEG--------RRYFHKMKSREY-----NLFPKLEH-----YGCMIDLLCRAGLLD 461
Query: 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL 304
+AL+L++ VKP+ ++L AC L
Sbjct: 462 EALELVK---AMPVKPDVRICGAILSACKNRGTL 492
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.140 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,680,401
Number of Sequences: 539616
Number of extensions: 5203120
Number of successful extensions: 20073
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 95
Number of HSP's that attempted gapping in prelim test: 14541
Number of HSP's gapped (non-prelim): 2232
length of query: 354
length of database: 191,569,459
effective HSP length: 118
effective length of query: 236
effective length of database: 127,894,771
effective search space: 30183165956
effective search space used: 30183165956
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 62 (28.5 bits)