Query 038758
Match_columns 354
No_of_seqs 357 out of 1550
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 03:00:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038758.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038758hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 2.8E-58 6E-63 432.2 30.9 347 2-354 104-505 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 3.6E-58 7.8E-63 440.9 32.1 347 3-353 205-667 (857)
3 PLN03218 maturation of RBCL 1; 100.0 3.6E-57 7.7E-62 428.8 29.2 349 2-352 387-798 (1060)
4 PLN03077 Protein ECB2; Provisi 100.0 4E-57 8.7E-62 433.7 29.9 346 1-353 168-599 (857)
5 PLN03218 maturation of RBCL 1; 100.0 1.7E-56 3.6E-61 424.2 28.2 320 32-353 474-857 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 2.3E-54 4.9E-59 405.7 28.6 351 2-354 140-539 (697)
7 TIGR02917 PEP_TPR_lipo putativ 99.9 3.4E-20 7.3E-25 181.0 28.6 314 32-352 535-880 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 3.7E-20 8.1E-25 180.8 28.4 300 32-339 569-898 (899)
9 PRK11788 tetratricopeptide rep 99.8 1.7E-19 3.7E-24 159.5 21.0 276 39-340 44-346 (389)
10 PRK11788 tetratricopeptide rep 99.8 5.7E-19 1.2E-23 156.1 19.9 257 72-352 42-324 (389)
11 KOG4422 Uncharacterized conser 99.7 2.6E-15 5.7E-20 124.7 24.3 324 2-350 132-565 (625)
12 PRK15174 Vi polysaccharide exp 99.7 1.9E-15 4E-20 140.9 23.7 300 34-340 46-380 (656)
13 KOG4626 O-linked N-acetylgluco 99.6 6.6E-15 1.4E-19 127.6 16.0 303 32-343 118-489 (966)
14 PRK11447 cellulose synthase su 99.6 3.6E-13 7.8E-18 133.9 28.7 330 2-340 320-699 (1157)
15 KOG4422 Uncharacterized conser 99.6 3.2E-13 7E-18 112.4 23.1 263 15-283 202-552 (625)
16 PRK15174 Vi polysaccharide exp 99.6 6.2E-13 1.3E-17 124.2 26.8 268 32-307 78-371 (656)
17 TIGR00990 3a0801s09 mitochondr 99.6 6.6E-13 1.4E-17 124.0 24.9 301 32-340 129-570 (615)
18 PRK11447 cellulose synthase su 99.6 1.8E-12 3.8E-17 129.0 28.6 298 32-340 305-665 (1157)
19 PRK10049 pgaA outer membrane p 99.6 4E-12 8.7E-17 121.2 29.4 302 32-340 51-455 (765)
20 KOG4318 Bicoid mRNA stability 99.5 6.8E-13 1.5E-17 119.5 19.2 249 6-304 11-287 (1088)
21 PF13041 PPR_2: PPR repeat fam 99.5 2.1E-14 4.5E-19 86.2 6.3 50 251-300 1-50 (50)
22 PF13429 TPR_15: Tetratricopep 99.5 3.3E-14 7.3E-19 119.6 7.9 250 37-338 15-274 (280)
23 TIGR00990 3a0801s09 mitochondr 99.5 4.9E-12 1.1E-16 118.2 22.2 227 32-282 333-571 (615)
24 PRK10049 pgaA outer membrane p 99.5 1.6E-11 3.4E-16 117.2 25.5 305 35-343 20-426 (765)
25 PF13041 PPR_2: PPR repeat fam 99.5 5.8E-14 1.3E-18 84.3 5.4 50 159-210 1-50 (50)
26 PRK09782 bacteriophage N4 rece 99.4 6E-11 1.3E-15 114.0 25.2 165 170-340 518-705 (987)
27 PRK10747 putative protoheme IX 99.4 2.6E-10 5.7E-15 100.6 23.7 275 32-339 84-388 (398)
28 PRK14574 hmsH outer membrane p 99.4 2.2E-10 4.7E-15 108.1 23.5 297 32-340 37-395 (822)
29 TIGR00540 hemY_coli hemY prote 99.4 5.8E-10 1.3E-14 98.9 24.8 62 254-339 336-397 (409)
30 KOG4626 O-linked N-acetylgluco 99.4 9.4E-11 2E-15 102.4 18.6 269 65-340 116-416 (966)
31 PF13429 TPR_15: Tetratricopep 99.3 1.6E-12 3.5E-17 109.4 6.2 220 33-280 47-275 (280)
32 PRK14574 hmsH outer membrane p 99.3 4.6E-09 1E-13 99.3 28.1 297 38-340 110-512 (822)
33 COG3071 HemY Uncharacterized e 99.3 9.6E-10 2.1E-14 91.3 20.5 267 43-339 97-388 (400)
34 KOG4318 Bicoid mRNA stability 99.3 2.8E-11 6.2E-16 109.4 11.9 259 51-330 11-289 (1088)
35 PRK09782 bacteriophage N4 rece 99.3 8.9E-10 1.9E-14 106.1 22.3 224 33-288 480-710 (987)
36 KOG2076 RNA polymerase III tra 99.3 2.5E-09 5.5E-14 97.3 23.5 298 43-343 152-514 (895)
37 KOG1126 DNA-binding cell divis 99.3 1.2E-09 2.6E-14 96.3 20.1 263 46-340 335-619 (638)
38 TIGR02521 type_IV_pilW type IV 99.3 4.8E-10 1E-14 91.5 16.7 190 32-226 33-231 (234)
39 PRK10747 putative protoheme IX 99.2 2.7E-09 5.8E-14 94.2 20.2 236 37-281 125-389 (398)
40 COG2956 Predicted N-acetylgluc 99.2 1.9E-09 4E-14 87.2 16.3 271 42-339 47-345 (389)
41 COG2956 Predicted N-acetylgluc 99.2 2.4E-09 5.2E-14 86.6 16.9 259 68-351 39-323 (389)
42 TIGR02521 type_IV_pilW type IV 99.2 1.5E-09 3.3E-14 88.6 16.4 193 64-281 30-231 (234)
43 KOG2002 TPR-containing nuclear 99.2 5.8E-09 1.3E-13 95.8 20.4 302 32-340 309-744 (1018)
44 KOG1126 DNA-binding cell divis 99.2 8.6E-10 1.9E-14 97.2 14.7 240 80-350 334-597 (638)
45 KOG1155 Anaphase-promoting com 99.1 1.1E-08 2.5E-13 86.6 19.2 277 38-339 235-534 (559)
46 TIGR00540 hemY_coli hemY prote 99.1 1.1E-08 2.4E-13 90.8 20.1 250 77-349 96-376 (409)
47 KOG2003 TPR repeat-containing 99.1 3.2E-09 6.8E-14 89.8 14.7 309 40-353 247-669 (840)
48 PRK12370 invasion protein regu 99.1 7.8E-09 1.7E-13 95.2 17.6 209 44-281 275-501 (553)
49 PRK12370 invasion protein regu 99.1 1.8E-08 3.9E-13 92.9 19.5 212 42-283 316-536 (553)
50 KOG1840 Kinesin light chain [C 99.1 8.6E-09 1.9E-13 91.4 16.0 241 66-339 200-477 (508)
51 COG3071 HemY Uncharacterized e 99.1 1.5E-07 3.2E-12 78.6 21.9 250 32-288 120-396 (400)
52 KOG2076 RNA polymerase III tra 99.0 3.7E-07 8.1E-12 83.6 25.2 319 2-338 156-552 (895)
53 KOG0495 HAT repeat protein [RN 99.0 5.5E-07 1.2E-11 79.9 24.9 317 18-340 493-845 (913)
54 KOG1840 Kinesin light chain [C 99.0 1.5E-08 3.3E-13 89.8 15.5 234 32-280 201-477 (508)
55 KOG1155 Anaphase-promoting com 99.0 2.6E-07 5.6E-12 78.6 20.9 265 40-340 272-552 (559)
56 KOG2003 TPR repeat-containing 99.0 4.8E-08 1E-12 82.8 15.4 262 39-327 428-709 (840)
57 PF12854 PPR_1: PPR repeat 98.9 1.4E-09 3.1E-14 58.6 3.8 32 308-339 3-34 (34)
58 PRK11189 lipoprotein NlpI; Pro 98.9 1.6E-07 3.6E-12 79.4 17.4 229 40-291 36-273 (296)
59 PF12569 NARP1: NMDA receptor- 98.9 8.5E-07 1.8E-11 79.7 21.6 259 38-339 12-332 (517)
60 KOG1129 TPR repeat-containing 98.9 5E-08 1.1E-12 79.3 12.3 227 34-288 227-462 (478)
61 KOG1173 Anaphase-promoting com 98.9 5.5E-07 1.2E-11 78.5 19.2 257 37-301 251-535 (611)
62 KOG1915 Cell cycle control pro 98.9 1.6E-06 3.4E-11 74.3 21.0 295 37-340 148-535 (677)
63 PF12854 PPR_1: PPR repeat 98.8 3E-09 6.4E-14 57.4 2.9 32 95-126 2-33 (34)
64 KOG1915 Cell cycle control pro 98.8 7.5E-06 1.6E-10 70.3 22.6 306 33-343 110-503 (677)
65 COG3063 PilF Tfp pilus assembl 98.8 1E-06 2.3E-11 68.4 16.1 191 32-227 37-236 (250)
66 COG3063 PilF Tfp pilus assembl 98.8 1.8E-06 4E-11 67.1 16.8 197 68-291 38-243 (250)
67 KOG1173 Anaphase-promoting com 98.7 2.9E-06 6.3E-11 74.1 19.7 237 65-307 244-508 (611)
68 PRK11189 lipoprotein NlpI; Pro 98.7 1.1E-06 2.4E-11 74.4 17.1 193 32-228 66-266 (296)
69 KOG0547 Translocase of outer m 98.7 1.5E-06 3.3E-11 74.6 17.3 297 32-339 117-564 (606)
70 KOG0547 Translocase of outer m 98.7 4E-07 8.7E-12 78.0 13.7 217 42-281 338-565 (606)
71 KOG2002 TPR-containing nuclear 98.7 1.6E-06 3.4E-11 80.3 17.9 245 62-307 449-735 (1018)
72 KOG3785 Uncharacterized conser 98.7 3.6E-06 7.9E-11 69.5 18.0 150 38-188 30-212 (557)
73 PF04733 Coatomer_E: Coatomer 98.7 1.6E-07 3.5E-12 78.5 10.3 220 34-282 39-265 (290)
74 KOG4340 Uncharacterized conser 98.7 4.7E-06 1E-10 67.3 17.6 300 33-340 13-338 (459)
75 KOG1129 TPR repeat-containing 98.6 6.3E-07 1.4E-11 73.1 11.0 213 104-340 227-457 (478)
76 cd05804 StaR_like StaR_like; a 98.6 2.8E-05 6E-10 68.0 22.5 261 39-339 52-334 (355)
77 TIGR00756 PPR pentatricopeptid 98.6 1.1E-07 2.3E-12 52.1 4.6 35 254-288 1-35 (35)
78 TIGR00756 PPR pentatricopeptid 98.6 1.1E-07 2.3E-12 52.1 4.4 34 32-65 2-35 (35)
79 PF04733 Coatomer_E: Coatomer 98.6 1.3E-06 2.9E-11 73.0 12.9 212 38-282 9-230 (290)
80 KOG1070 rRNA processing protei 98.5 3.4E-06 7.4E-11 80.9 15.6 197 68-289 1461-1670(1710)
81 PF13812 PPR_3: Pentatricopept 98.5 2.4E-07 5.3E-12 50.2 4.5 34 253-286 1-34 (34)
82 KOG0495 HAT repeat protein [RN 98.5 0.00022 4.7E-09 64.0 23.7 124 33-156 443-576 (913)
83 KOG2376 Signal recognition par 98.5 8E-05 1.7E-09 65.8 20.8 313 36-354 18-503 (652)
84 KOG0985 Vesicle coat protein c 98.5 0.00013 2.9E-09 68.4 23.0 282 33-339 987-1306(1666)
85 PF13812 PPR_3: Pentatricopept 98.5 3.2E-07 7E-12 49.8 4.1 32 32-63 3-34 (34)
86 PF12569 NARP1: NMDA receptor- 98.4 1.9E-05 4.2E-10 71.2 16.3 256 73-343 12-293 (517)
87 KOG2047 mRNA splicing factor [ 98.4 0.00017 3.7E-09 64.5 21.1 254 32-290 250-586 (835)
88 KOG1128 Uncharacterized conser 98.3 5.2E-05 1.1E-09 68.6 17.0 228 34-299 402-634 (777)
89 KOG1174 Anaphase-promoting com 98.3 0.00092 2E-08 56.9 22.9 265 44-339 210-498 (564)
90 PRK10370 formate-dependent nit 98.3 2.8E-05 6.1E-10 61.5 13.5 156 35-207 21-186 (198)
91 PF01535 PPR: PPR repeat; Int 98.3 1.4E-06 2.9E-11 46.1 3.6 31 254-284 1-31 (31)
92 cd05804 StaR_like StaR_like; a 98.2 0.00071 1.5E-08 59.2 22.1 153 32-187 8-174 (355)
93 TIGR03302 OM_YfiO outer membra 98.2 8.3E-05 1.8E-09 60.9 15.2 179 32-227 35-232 (235)
94 TIGR03302 OM_YfiO outer membra 98.2 3.4E-05 7.3E-10 63.2 12.8 165 64-249 32-230 (235)
95 PF08579 RPM2: Mitochondrial r 98.2 1.2E-05 2.7E-10 55.2 8.2 87 165-300 29-116 (120)
96 KOG3616 Selective LIM binding 98.2 7.1E-05 1.5E-09 67.9 15.1 180 138-336 740-932 (1636)
97 PF01535 PPR: PPR repeat; Int 98.2 1.9E-06 4.1E-11 45.5 3.4 30 32-61 2-31 (31)
98 KOG3617 WD40 and TPR repeat-co 98.2 0.00035 7.5E-09 64.4 19.4 116 32-157 759-885 (1416)
99 KOG2047 mRNA splicing factor [ 98.2 0.0016 3.4E-08 58.6 22.5 153 32-188 104-275 (835)
100 PF08579 RPM2: Mitochondrial r 98.1 1.6E-05 3.4E-10 54.7 7.1 81 32-112 27-116 (120)
101 KOG1125 TPR repeat-containing 98.1 5.3E-05 1.2E-09 66.7 11.7 85 40-126 295-379 (579)
102 PRK10370 formate-dependent nit 98.1 0.00011 2.4E-09 58.1 12.6 106 159-290 71-180 (198)
103 KOG3785 Uncharacterized conser 98.1 0.00026 5.5E-09 59.0 14.7 301 34-347 125-498 (557)
104 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 8E-05 1.7E-09 64.7 12.4 120 34-188 173-295 (395)
105 PLN02789 farnesyltranstransfer 98.0 0.0012 2.6E-08 56.3 18.8 222 32-280 39-300 (320)
106 KOG1070 rRNA processing protei 98.0 0.00046 1E-08 67.1 17.6 206 19-229 1443-1665(1710)
107 PRK15359 type III secretion sy 98.0 0.00015 3.2E-09 54.3 11.3 88 37-126 31-118 (144)
108 COG5010 TadD Flp pilus assembl 98.0 0.00025 5.3E-09 56.6 12.8 150 36-187 72-228 (257)
109 PF10037 MRP-S27: Mitochondria 98.0 6.6E-05 1.4E-09 65.6 10.5 123 159-301 64-186 (429)
110 PRK14720 transcript cleavage f 98.0 0.00065 1.4E-08 64.8 17.8 217 65-340 31-251 (906)
111 COG5010 TadD Flp pilus assembl 98.0 0.0011 2.3E-08 53.1 16.1 122 138-283 74-198 (257)
112 KOG1174 Anaphase-promoting com 98.0 0.0011 2.5E-08 56.4 17.0 250 32-289 234-505 (564)
113 PRK15359 type III secretion sy 98.0 0.00012 2.5E-09 54.8 10.4 113 153-291 16-128 (144)
114 PRK04841 transcriptional regul 98.0 0.002 4.3E-08 63.9 21.6 279 39-340 418-759 (903)
115 KOG3081 Vesicle coat complex C 98.0 0.00015 3.3E-09 57.9 10.8 173 85-282 93-271 (299)
116 PLN02789 farnesyltranstransfer 97.9 0.0019 4.2E-08 55.0 17.8 202 73-300 45-267 (320)
117 KOG0548 Molecular co-chaperone 97.9 0.00091 2E-08 58.7 15.7 82 260-342 365-456 (539)
118 COG4783 Putative Zn-dependent 97.9 0.0025 5.5E-08 55.5 18.2 143 170-346 315-462 (484)
119 KOG3616 Selective LIM binding 97.9 0.0013 2.7E-08 60.2 16.9 135 37-187 739-876 (1636)
120 KOG0624 dsRNA-activated protei 97.9 0.0016 3.4E-08 54.2 15.9 186 36-230 44-255 (504)
121 PRK14720 transcript cleavage f 97.9 0.0013 2.9E-08 62.8 17.3 140 32-188 33-196 (906)
122 TIGR02552 LcrH_SycD type III s 97.9 0.00014 3E-09 53.8 8.9 105 68-204 20-124 (135)
123 KOG4162 Predicted calmodulin-b 97.9 0.005 1.1E-07 56.6 19.8 218 39-282 487-783 (799)
124 KOG4340 Uncharacterized conser 97.8 0.0011 2.4E-08 54.1 14.0 246 60-349 5-283 (459)
125 TIGR02552 LcrH_SycD type III s 97.8 0.00017 3.7E-09 53.3 9.0 91 136-229 23-116 (135)
126 KOG1914 mRNA cleavage and poly 97.8 0.0039 8.5E-08 55.1 18.0 139 177-340 347-500 (656)
127 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00016 3.6E-09 62.8 9.9 122 135-280 174-295 (395)
128 PRK15179 Vi polysaccharide bio 97.8 0.002 4.3E-08 60.8 17.6 130 96-228 82-218 (694)
129 KOG0985 Vesicle coat protein c 97.8 0.023 4.9E-07 54.3 23.6 83 44-126 657-750 (1666)
130 PF10037 MRP-S27: Mitochondria 97.8 0.0002 4.3E-09 62.6 10.1 111 99-211 65-186 (429)
131 KOG1156 N-terminal acetyltrans 97.8 0.009 2E-07 54.0 20.2 89 250-340 366-467 (700)
132 PF09976 TPR_21: Tetratricopep 97.8 0.00045 9.7E-09 51.8 10.8 92 32-126 14-111 (145)
133 KOG3081 Vesicle coat complex C 97.8 0.003 6.5E-08 50.7 15.1 233 37-304 15-257 (299)
134 KOG1156 N-terminal acetyltrans 97.8 0.005 1.1E-07 55.5 18.1 112 43-156 54-169 (700)
135 KOG1128 Uncharacterized conser 97.8 0.00038 8.2E-09 63.3 11.2 186 32-229 426-618 (777)
136 PRK15179 Vi polysaccharide bio 97.7 0.0014 3.1E-08 61.7 14.7 133 32-167 88-228 (694)
137 COG4783 Putative Zn-dependent 97.7 0.0033 7.2E-08 54.8 15.5 103 43-149 319-427 (484)
138 PF06239 ECSIT: Evolutionarily 97.7 0.00014 3.1E-09 56.5 6.7 85 32-116 49-154 (228)
139 cd00189 TPR Tetratricopeptide 97.7 0.00036 7.7E-09 47.4 8.2 92 33-126 3-94 (100)
140 PF09976 TPR_21: Tetratricopep 97.7 0.0013 2.8E-08 49.3 11.4 118 67-186 14-143 (145)
141 PF06239 ECSIT: Evolutionarily 97.6 0.00074 1.6E-08 52.7 9.5 114 150-304 34-154 (228)
142 KOG2376 Signal recognition par 97.6 0.037 8E-07 49.7 20.9 89 38-126 118-250 (652)
143 PF07079 DUF1347: Protein of u 97.6 0.041 8.9E-07 47.9 21.2 78 270-348 438-530 (549)
144 CHL00033 ycf3 photosystem I as 97.6 0.0013 2.9E-08 50.6 11.0 90 32-122 37-135 (168)
145 PF05843 Suf: Suppressor of fo 97.5 0.001 2.2E-08 55.9 10.2 145 32-208 3-150 (280)
146 PF05843 Suf: Suppressor of fo 97.5 0.00097 2.1E-08 56.0 9.9 82 43-126 49-133 (280)
147 KOG4162 Predicted calmodulin-b 97.5 0.079 1.7E-06 49.1 23.6 77 262-340 693-782 (799)
148 PRK04841 transcriptional regul 97.5 0.014 3E-07 58.0 19.6 233 32-283 493-761 (903)
149 PF12895 Apc3: Anaphase-promot 97.5 0.0001 2.2E-09 49.4 3.2 81 43-125 2-83 (84)
150 KOG2053 Mitochondrial inherita 97.5 0.023 4.9E-07 53.4 18.5 217 41-283 20-256 (932)
151 KOG3617 WD40 and TPR repeat-co 97.4 0.0043 9.3E-08 57.6 13.5 276 39-338 737-1048(1416)
152 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0026 5.6E-08 45.6 9.9 94 33-126 5-102 (119)
153 PRK02603 photosystem I assembl 97.4 0.0022 4.8E-08 49.6 9.9 88 32-120 37-126 (172)
154 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.0062 1.3E-07 43.6 11.1 101 163-283 4-106 (119)
155 cd00189 TPR Tetratricopeptide 97.3 0.001 2.2E-08 45.0 6.6 93 68-188 3-95 (100)
156 PF14938 SNAP: Soluble NSF att 97.3 0.0038 8.3E-08 52.6 10.6 131 32-188 37-182 (282)
157 PF12895 Apc3: Anaphase-promot 97.2 0.00057 1.2E-08 45.8 4.4 47 79-125 3-50 (84)
158 KOG3060 Uncharacterized conser 97.2 0.016 3.5E-07 46.4 12.8 181 42-227 24-220 (289)
159 KOG2796 Uncharacterized conser 97.1 0.02 4.4E-07 46.1 12.7 172 22-204 138-325 (366)
160 KOG1914 mRNA cleavage and poly 97.1 0.073 1.6E-06 47.4 17.1 127 132-281 368-500 (656)
161 KOG2796 Uncharacterized conser 97.1 0.044 9.6E-07 44.2 14.1 138 32-169 179-327 (366)
162 PF04840 Vps16_C: Vps16, C-ter 97.1 0.15 3.3E-06 43.5 19.5 111 198-339 177-289 (319)
163 PF04840 Vps16_C: Vps16, C-ter 97.1 0.025 5.3E-07 48.3 13.7 107 100-220 177-284 (319)
164 PF14559 TPR_19: Tetratricopep 97.1 0.002 4.3E-08 41.0 5.7 62 264-350 2-65 (68)
165 KOG1538 Uncharacterized conser 97.1 0.11 2.4E-06 47.3 17.8 225 8-283 623-847 (1081)
166 KOG2280 Vacuolar assembly/sort 97.0 0.3 6.4E-06 45.5 21.7 178 6-188 369-573 (829)
167 PLN03088 SGT1, suppressor of 97.0 0.0079 1.7E-07 52.4 10.3 87 38-126 10-96 (356)
168 KOG3060 Uncharacterized conser 97.0 0.086 1.9E-06 42.4 14.7 154 32-188 54-218 (289)
169 KOG1127 TPR repeat-containing 97.0 0.059 1.3E-06 51.5 15.8 167 20-188 475-657 (1238)
170 PRK15363 pathogenicity island 96.9 0.012 2.5E-07 43.9 9.0 85 39-125 44-128 (157)
171 PRK15363 pathogenicity island 96.9 0.0049 1.1E-07 45.9 7.0 56 70-126 40-95 (157)
172 KOG0624 dsRNA-activated protei 96.9 0.093 2E-06 44.1 14.8 220 39-282 115-370 (504)
173 PF14938 SNAP: Soluble NSF att 96.9 0.015 3.2E-07 49.1 10.7 222 68-349 38-274 (282)
174 PLN03088 SGT1, suppressor of 96.8 0.011 2.5E-07 51.5 10.0 29 253-281 70-98 (356)
175 KOG1125 TPR repeat-containing 96.8 0.071 1.5E-06 47.8 14.6 187 32-225 321-525 (579)
176 PF14559 TPR_19: Tetratricopep 96.8 0.0031 6.8E-08 40.1 5.0 46 79-125 5-50 (68)
177 PRK02603 photosystem I assembl 96.8 0.027 6E-07 43.5 10.7 61 164-226 38-100 (172)
178 PRK10866 outer membrane biogen 96.8 0.076 1.7E-06 43.5 13.7 58 167-224 181-238 (243)
179 PRK10866 outer membrane biogen 96.8 0.052 1.1E-06 44.5 12.6 57 259-337 181-237 (243)
180 CHL00033 ycf3 photosystem I as 96.7 0.024 5.2E-07 43.6 10.0 96 161-279 35-139 (168)
181 PRK10153 DNA-binding transcrip 96.7 0.032 6.9E-07 51.1 11.8 137 61-202 333-490 (517)
182 PF12921 ATP13: Mitochondrial 96.7 0.021 4.5E-07 41.3 8.5 54 250-303 49-103 (126)
183 COG5107 RNA14 Pre-mRNA 3'-end 96.6 0.34 7.3E-06 42.5 16.7 133 162-299 398-546 (660)
184 PF07035 Mic1: Colon cancer-as 96.6 0.12 2.6E-06 39.2 12.4 134 49-188 13-147 (167)
185 PF04053 Coatomer_WDAD: Coatom 96.5 0.075 1.6E-06 47.6 12.9 157 74-279 270-428 (443)
186 PF12688 TPR_5: Tetratrico pep 96.5 0.019 4.1E-07 41.1 7.5 86 38-125 9-100 (120)
187 PF12688 TPR_5: Tetratrico pep 96.5 0.053 1.1E-06 38.8 9.6 103 71-173 7-118 (120)
188 smart00299 CLH Clathrin heavy 96.5 0.15 3.2E-06 37.8 12.5 125 34-172 11-136 (140)
189 PRK10803 tol-pal system protei 96.5 0.033 7.2E-07 46.1 9.7 93 32-126 145-243 (263)
190 PF13432 TPR_16: Tetratricopep 96.4 0.014 3E-07 36.7 5.9 57 37-94 4-60 (65)
191 PF03704 BTAD: Bacterial trans 96.4 0.011 2.5E-07 44.2 6.1 70 32-102 64-138 (146)
192 COG4700 Uncharacterized protei 96.4 0.19 4.1E-06 38.5 12.1 97 61-157 85-187 (251)
193 KOG3941 Intermediate in Toll s 96.3 0.045 9.8E-07 44.6 9.3 114 149-303 53-173 (406)
194 PF13432 TPR_16: Tetratricopep 96.3 0.0075 1.6E-07 37.9 4.1 54 72-126 4-57 (65)
195 PF13414 TPR_11: TPR repeat; P 96.3 0.0083 1.8E-07 38.2 4.3 57 67-124 5-62 (69)
196 KOG2280 Vacuolar assembly/sort 96.3 0.28 6.1E-06 45.6 15.0 62 32-93 509-574 (829)
197 PF03704 BTAD: Bacterial trans 96.3 0.013 2.8E-07 43.9 5.8 67 203-290 67-138 (146)
198 KOG2041 WD40 repeat protein [G 96.2 0.13 2.8E-06 47.4 12.5 75 106-185 828-902 (1189)
199 PF12921 ATP13: Mitochondrial 96.2 0.057 1.2E-06 39.1 8.6 100 100-213 2-103 (126)
200 KOG0553 TPR repeat-containing 96.2 0.027 5.8E-07 46.3 7.4 85 264-350 92-189 (304)
201 KOG2053 Mitochondrial inherita 96.1 0.55 1.2E-05 44.7 16.4 128 76-209 20-155 (932)
202 PF13424 TPR_12: Tetratricopep 96.1 0.026 5.7E-07 36.9 6.2 66 254-338 6-72 (78)
203 PF13525 YfiO: Outer membrane 96.0 0.042 9.1E-07 43.8 8.1 168 38-215 13-195 (203)
204 KOG0548 Molecular co-chaperone 96.0 0.53 1.2E-05 42.1 14.9 237 32-301 226-472 (539)
205 PF13281 DUF4071: Domain of un 96.0 0.71 1.5E-05 40.1 15.4 182 135-346 146-339 (374)
206 PF00637 Clathrin: Region in C 95.9 0.0038 8.2E-08 46.6 1.5 84 36-126 13-96 (143)
207 PF13371 TPR_9: Tetratricopept 95.9 0.047 1E-06 35.1 6.5 57 38-95 3-59 (73)
208 PRK10803 tol-pal system protei 95.8 0.06 1.3E-06 44.6 8.3 97 133-229 146-248 (263)
209 COG4235 Cytochrome c biogenesi 95.8 0.12 2.5E-06 42.8 9.7 112 159-296 154-268 (287)
210 PRK10153 DNA-binding transcrip 95.8 0.15 3.1E-06 46.9 11.4 120 44-165 356-490 (517)
211 PF13424 TPR_12: Tetratricopep 95.8 0.017 3.6E-07 37.8 4.0 26 162-187 47-72 (78)
212 KOG0553 TPR repeat-containing 95.7 0.077 1.7E-06 43.7 8.1 101 171-298 91-192 (304)
213 PF13371 TPR_9: Tetratricopept 95.7 0.032 6.8E-07 35.9 5.0 53 73-126 3-55 (73)
214 KOG1127 TPR repeat-containing 95.6 0.2 4.2E-06 48.2 11.4 175 46-227 474-659 (1238)
215 PF09205 DUF1955: Domain of un 95.6 0.5 1.1E-05 34.1 10.6 135 40-195 12-152 (161)
216 KOG1538 Uncharacterized conser 95.5 0.94 2E-05 41.7 14.8 255 32-340 558-845 (1081)
217 PF13414 TPR_11: TPR repeat; P 95.5 0.049 1.1E-06 34.5 5.5 62 32-94 5-67 (69)
218 KOG3941 Intermediate in Toll s 95.5 0.06 1.3E-06 44.0 6.8 85 32-116 69-174 (406)
219 smart00299 CLH Clathrin heavy 95.4 0.78 1.7E-05 33.9 12.8 127 67-209 9-136 (140)
220 COG3898 Uncharacterized membra 95.3 1.7 3.7E-05 37.6 17.2 163 32-198 84-298 (531)
221 PF10300 DUF3808: Protein of u 95.3 0.39 8.5E-06 43.7 12.2 125 32-158 190-333 (468)
222 COG4235 Cytochrome c biogenesi 95.3 0.43 9.3E-06 39.6 11.1 93 32-126 158-253 (287)
223 PF13525 YfiO: Outer membrane 95.2 0.31 6.8E-06 38.8 10.2 167 138-332 13-198 (203)
224 PF00637 Clathrin: Region in C 95.2 0.0072 1.6E-07 45.1 0.7 54 71-124 13-66 (143)
225 PRK15331 chaperone protein Sic 95.1 0.29 6.3E-06 36.9 8.9 80 74-154 46-129 (165)
226 PF09205 DUF1955: Domain of un 94.9 0.92 2E-05 32.8 10.3 137 76-229 13-151 (161)
227 COG5107 RNA14 Pre-mRNA 3'-end 94.8 0.54 1.2E-05 41.3 10.9 139 66-209 398-546 (660)
228 COG4700 Uncharacterized protei 94.8 1.4 3E-05 34.0 12.1 102 159-282 87-189 (251)
229 PRK15331 chaperone protein Sic 94.8 0.28 6.1E-06 36.9 8.1 86 39-126 46-131 (165)
230 KOG2041 WD40 repeat protein [G 94.7 1.2 2.7E-05 41.4 13.2 244 62-340 689-951 (1189)
231 COG3898 Uncharacterized membra 94.5 2.9 6.3E-05 36.3 21.6 283 46-340 69-391 (531)
232 COG4105 ComL DNA uptake lipopr 94.2 1.4 3.1E-05 35.8 11.4 58 167-227 173-233 (254)
233 COG1729 Uncharacterized protei 94.2 0.53 1.2E-05 38.5 9.0 93 33-126 145-241 (262)
234 PF04053 Coatomer_WDAD: Coatom 94.1 1 2.2E-05 40.5 11.5 158 38-222 269-426 (443)
235 KOG2114 Vacuolar assembly/sort 93.8 0.79 1.7E-05 43.4 10.4 137 41-188 379-517 (933)
236 KOG1920 IkappaB kinase complex 93.4 8.7 0.00019 38.4 16.8 30 62-92 788-819 (1265)
237 PF13281 DUF4071: Domain of un 93.1 5.6 0.00012 34.8 15.9 153 36-188 147-332 (374)
238 KOG0550 Molecular chaperone (D 93.1 4.1 8.9E-05 35.6 12.7 80 261-340 257-349 (486)
239 PF13170 DUF4003: Protein of u 93.0 2.2 4.7E-05 36.2 11.1 121 81-229 78-213 (297)
240 KOG2066 Vacuolar assembly/sort 92.9 8.7 0.00019 36.6 16.4 145 37-188 363-532 (846)
241 KOG1130 Predicted G-alpha GTPa 92.8 0.23 4.9E-06 43.0 5.0 245 38-282 25-344 (639)
242 PF13176 TPR_7: Tetratricopept 92.5 0.35 7.7E-06 26.0 4.0 26 255-280 1-26 (36)
243 COG3629 DnrI DNA-binding trans 92.4 1 2.2E-05 37.5 8.2 49 250-298 184-237 (280)
244 PLN03098 LPA1 LOW PSII ACCUMUL 92.4 0.93 2E-05 40.2 8.3 61 32-94 77-141 (453)
245 COG4105 ComL DNA uptake lipopr 92.3 5.3 0.00012 32.6 13.6 168 138-343 42-237 (254)
246 PF13929 mRNA_stabil: mRNA sta 92.3 4.2 9.2E-05 33.9 11.5 111 43-153 141-261 (292)
247 KOG0276 Vesicle coat complex C 92.0 1.5 3.2E-05 40.1 9.2 132 102-279 616-747 (794)
248 PF13170 DUF4003: Protein of u 91.9 4.8 0.0001 34.1 11.9 130 46-205 78-224 (297)
249 PF10602 RPN7: 26S proteasome 91.7 1.5 3.3E-05 34.0 8.1 63 32-94 38-102 (177)
250 PLN03098 LPA1 LOW PSII ACCUMUL 91.6 0.58 1.3E-05 41.4 6.2 61 64-126 74-138 (453)
251 KOG1130 Predicted G-alpha GTPa 91.5 0.46 9.9E-06 41.2 5.3 251 74-340 26-343 (639)
252 PF13176 TPR_7: Tetratricopept 91.4 0.48 1E-05 25.4 3.7 24 33-56 2-25 (36)
253 PF13428 TPR_14: Tetratricopep 91.2 0.37 8.1E-06 27.3 3.3 24 35-58 6-29 (44)
254 COG3629 DnrI DNA-binding trans 91.2 1.4 3E-05 36.7 7.7 77 32-109 155-236 (280)
255 KOG2114 Vacuolar assembly/sort 91.0 6.8 0.00015 37.6 12.6 170 135-340 339-518 (933)
256 PF13512 TPR_18: Tetratricopep 90.7 5.3 0.00012 29.5 9.7 49 140-188 20-74 (142)
257 COG1729 Uncharacterized protei 90.7 3.6 7.8E-05 33.8 9.5 105 163-288 144-248 (262)
258 KOG0543 FKBP-type peptidyl-pro 90.6 1.6 3.4E-05 37.9 7.7 87 102-188 259-353 (397)
259 PF10300 DUF3808: Protein of u 90.6 4.1 8.8E-05 37.2 10.9 93 32-126 231-331 (468)
260 PF13762 MNE1: Mitochondrial s 90.2 3.7 8E-05 30.4 8.4 87 32-118 41-133 (145)
261 PF13428 TPR_14: Tetratricopep 90.1 1.3 2.9E-05 25.0 5.0 34 255-290 3-36 (44)
262 cd00923 Cyt_c_Oxidase_Va Cytoc 90.0 1.6 3.5E-05 29.5 5.8 59 48-107 25-83 (103)
263 PF13512 TPR_18: Tetratricopep 90.0 2.7 5.9E-05 31.0 7.5 77 40-116 20-98 (142)
264 PF07035 Mic1: Colon cancer-as 89.8 6.7 0.00015 29.9 9.8 134 85-228 14-150 (167)
265 PF04184 ST7: ST7 protein; In 89.8 12 0.00026 33.8 12.5 167 36-213 174-346 (539)
266 KOG0543 FKBP-type peptidyl-pro 89.7 2.2 4.7E-05 37.1 7.8 115 108-226 216-354 (397)
267 COG3118 Thioredoxin domain-con 89.6 11 0.00024 31.5 13.7 137 74-212 143-286 (304)
268 COG3118 Thioredoxin domain-con 89.4 7.9 0.00017 32.4 10.5 140 39-179 143-290 (304)
269 KOG1585 Protein required for f 89.2 5.6 0.00012 32.3 9.2 187 32-222 33-251 (308)
270 PF07079 DUF1347: Protein of u 89.1 16 0.00035 32.6 18.9 53 264-318 473-531 (549)
271 KOG2610 Uncharacterized conser 88.8 6.4 0.00014 33.6 9.7 142 43-186 116-272 (491)
272 KOG4555 TPR repeat-containing 88.7 4.8 0.0001 29.2 7.7 86 39-125 52-140 (175)
273 PF02284 COX5A: Cytochrome c o 88.6 1.8 3.9E-05 29.6 5.3 59 48-107 28-86 (108)
274 PF04184 ST7: ST7 protein; In 88.5 10 0.00022 34.2 11.2 107 211-340 213-323 (539)
275 PF13431 TPR_17: Tetratricopep 88.2 0.38 8.2E-06 25.5 1.6 24 97-120 10-33 (34)
276 TIGR02561 HrpB1_HrpK type III 88.0 7.7 0.00017 28.8 8.7 17 110-126 54-70 (153)
277 KOG1585 Protein required for f 87.8 14 0.00029 30.2 11.5 26 68-93 34-59 (308)
278 PF08631 SPO22: Meiosis protei 87.2 17 0.00036 30.6 20.3 138 41-208 4-165 (278)
279 KOG0403 Neoplastic transformat 86.7 23 0.0005 31.6 16.4 123 32-159 216-374 (645)
280 PF13374 TPR_10: Tetratricopep 86.5 1.9 4E-05 23.6 4.0 28 254-281 3-30 (42)
281 PF07721 TPR_4: Tetratricopept 86.4 1.4 3E-05 21.5 3.0 24 314-337 3-26 (26)
282 PRK11906 transcriptional regul 86.3 15 0.00033 33.0 11.1 81 43-125 317-397 (458)
283 PF09613 HrpB1_HrpK: Bacterial 86.1 13 0.00028 28.1 9.3 20 139-158 53-72 (160)
284 PF04097 Nic96: Nup93/Nic96; 86.0 32 0.0007 32.8 16.2 46 33-79 114-159 (613)
285 PF13374 TPR_10: Tetratricopep 85.3 2 4.2E-05 23.5 3.7 27 32-58 4-30 (42)
286 PF10366 Vps39_1: Vacuolar sor 84.7 11 0.00025 26.4 8.3 63 25-93 4-67 (108)
287 PF09613 HrpB1_HrpK: Bacterial 84.6 15 0.00033 27.8 9.8 48 141-188 21-71 (160)
288 PF00515 TPR_1: Tetratricopept 84.5 0.82 1.8E-05 23.9 1.8 28 313-340 2-29 (34)
289 KOG4555 TPR repeat-containing 83.9 6.2 0.00013 28.6 6.3 49 75-124 53-101 (175)
290 PF13174 TPR_6: Tetratricopept 83.9 0.63 1.4E-05 24.0 1.2 28 315-342 3-32 (33)
291 PF10602 RPN7: 26S proteasome 83.8 4.3 9.4E-05 31.4 6.1 60 67-126 38-99 (177)
292 PF07719 TPR_2: Tetratricopept 83.7 0.92 2E-05 23.6 1.8 28 313-340 2-29 (34)
293 PF00515 TPR_1: Tetratricopept 83.7 3.7 7.9E-05 21.3 4.2 29 254-282 2-30 (34)
294 PF11207 DUF2989: Protein of u 83.6 5.9 0.00013 31.1 6.6 65 84-149 125-197 (203)
295 cd00923 Cyt_c_Oxidase_Va Cytoc 83.5 3.7 8E-05 27.9 4.7 47 179-227 25-71 (103)
296 TIGR02508 type_III_yscG type I 83.3 12 0.00027 25.7 8.2 60 137-201 46-105 (115)
297 COG4649 Uncharacterized protei 83.0 18 0.00038 27.9 8.6 124 141-286 69-200 (221)
298 COG4455 ImpE Protein of avirul 82.7 7.4 0.00016 31.0 6.8 56 36-92 7-62 (273)
299 PF02284 COX5A: Cytochrome c o 82.0 3.9 8.5E-05 28.0 4.5 47 179-227 28-74 (108)
300 KOG1586 Protein required for f 81.8 9.7 0.00021 30.8 7.2 17 172-188 165-181 (288)
301 PF13762 MNE1: Mitochondrial s 81.7 9 0.0002 28.4 6.7 51 159-211 77-128 (145)
302 KOG1586 Protein required for f 81.7 26 0.00057 28.4 9.5 23 264-286 165-187 (288)
303 KOG4570 Uncharacterized conser 81.0 14 0.0003 31.3 8.2 109 153-283 56-165 (418)
304 PF10366 Vps39_1: Vacuolar sor 80.5 10 0.00023 26.5 6.5 65 257-340 3-67 (108)
305 PF07719 TPR_2: Tetratricopept 80.4 5.6 0.00012 20.4 4.2 28 255-282 3-30 (34)
306 KOG0276 Vesicle coat complex C 80.2 20 0.00043 33.3 9.5 92 113-222 599-690 (794)
307 COG0457 NrfG FOG: TPR repeat [ 80.1 26 0.00057 27.4 14.5 156 32-188 61-229 (291)
308 PRK11906 transcriptional regul 79.3 48 0.001 29.9 11.5 112 45-157 273-399 (458)
309 KOG4570 Uncharacterized conser 78.6 17 0.00037 30.9 7.9 94 95-188 59-162 (418)
310 COG4455 ImpE Protein of avirul 78.6 30 0.00064 27.8 8.8 72 67-139 3-81 (273)
311 PF13929 mRNA_stabil: mRNA sta 78.4 39 0.00085 28.4 13.7 126 144-290 142-280 (292)
312 COG0735 Fur Fe2+/Zn2+ uptake r 78.2 13 0.00028 27.7 6.8 62 54-116 10-71 (145)
313 KOG0550 Molecular chaperone (D 77.3 18 0.00038 32.0 8.0 94 32-126 251-347 (486)
314 PF11848 DUF3368: Domain of un 77.2 12 0.00025 21.7 5.0 38 260-297 9-46 (48)
315 PHA02875 ankyrin repeat protei 77.2 54 0.0012 29.3 15.4 138 38-184 7-155 (413)
316 COG0457 NrfG FOG: TPR repeat [ 77.1 33 0.00071 26.8 17.0 216 43-282 36-265 (291)
317 PF13181 TPR_8: Tetratricopept 76.7 8.4 0.00018 19.8 4.1 28 255-282 3-30 (34)
318 PF11207 DUF2989: Protein of u 76.4 7.8 0.00017 30.5 5.3 72 108-181 115-198 (203)
319 COG0735 Fur Fe2+/Zn2+ uptake r 76.4 14 0.0003 27.6 6.5 40 86-126 7-46 (145)
320 KOG2610 Uncharacterized conser 76.2 24 0.00052 30.3 8.3 131 23-155 126-272 (491)
321 COG5159 RPN6 26S proteasome re 75.4 26 0.00057 29.3 8.1 54 166-221 8-68 (421)
322 KOG4648 Uncharacterized conser 75.1 3 6.5E-05 35.5 2.9 44 262-307 106-150 (536)
323 TIGR03504 FimV_Cterm FimV C-te 74.1 6 0.00013 22.4 3.1 22 167-188 5-26 (44)
324 TIGR03504 FimV_Cterm FimV C-te 73.8 8.9 0.00019 21.8 3.8 26 258-283 4-29 (44)
325 KOG4567 GTPase-activating prot 73.2 39 0.00085 28.6 8.7 79 85-163 263-351 (370)
326 PHA02940 hypothetical protein; 73.1 49 0.0011 26.9 9.1 95 7-110 115-214 (315)
327 KOG2063 Vacuolar assembly/sort 72.9 72 0.0016 31.7 11.7 63 162-227 505-573 (877)
328 PF02259 FAT: FAT domain; Int 71.8 66 0.0014 27.8 13.4 68 252-340 145-212 (352)
329 TIGR02508 type_III_yscG type I 71.8 30 0.00065 23.9 7.3 55 235-292 52-106 (115)
330 PRK10564 maltose regulon perip 71.4 9.6 0.00021 32.0 5.0 43 253-295 257-299 (303)
331 PF07163 Pex26: Pex26 protein; 71.4 26 0.00056 29.2 7.2 87 168-276 90-181 (309)
332 cd08819 CARD_MDA5_2 Caspase ac 71.1 21 0.00046 23.8 5.5 35 77-116 48-82 (88)
333 PF11846 DUF3366: Domain of un 71.0 14 0.0003 29.0 5.8 52 75-126 118-170 (193)
334 PF13934 ELYS: Nuclear pore co 70.0 58 0.0013 26.4 9.4 101 68-175 79-186 (226)
335 KOG4077 Cytochrome c oxidase, 69.4 17 0.00038 26.1 5.1 43 84-126 68-110 (149)
336 PF04097 Nic96: Nup93/Nic96; 69.4 1E+02 0.0022 29.6 11.9 199 135-340 116-355 (613)
337 PF07163 Pex26: Pex26 protein; 69.0 47 0.001 27.8 8.2 10 144-153 172-181 (309)
338 PRK11639 zinc uptake transcrip 68.5 34 0.00074 26.3 7.2 62 56-118 17-78 (169)
339 TIGR02561 HrpB1_HrpK type III 68.0 49 0.0011 24.8 11.3 18 76-93 55-72 (153)
340 KOG1920 IkappaB kinase complex 67.9 1.5E+02 0.0033 30.4 15.9 20 315-334 1187-1206(1265)
341 PF11848 DUF3368: Domain of un 67.9 18 0.00039 20.9 4.3 37 169-207 10-46 (48)
342 PF11663 Toxin_YhaV: Toxin wit 67.4 6.3 0.00014 28.6 2.7 31 265-297 107-137 (140)
343 COG3947 Response regulator con 67.4 13 0.00029 31.1 4.9 53 104-156 283-339 (361)
344 COG2976 Uncharacterized protei 66.2 54 0.0012 25.8 7.6 81 108-188 97-186 (207)
345 PF04190 DUF410: Protein of un 65.9 78 0.0017 26.4 10.3 23 101-123 91-113 (260)
346 PF14162 YozD: YozD-like prote 65.7 19 0.00042 20.9 3.9 38 2-41 12-49 (57)
347 PF10345 Cohesin_load: Cohesin 65.1 1.3E+02 0.0029 28.7 17.2 85 42-126 151-251 (608)
348 PF14669 Asp_Glu_race_2: Putat 64.9 67 0.0015 25.3 9.3 133 13-155 1-206 (233)
349 COG3947 Response regulator con 64.7 28 0.00061 29.2 6.2 54 37-91 286-339 (361)
350 COG1747 Uncharacterized N-term 64.7 1.2E+02 0.0026 28.0 16.9 159 64-228 65-235 (711)
351 PRK10564 maltose regulon perip 64.2 12 0.00025 31.6 4.1 44 159-204 254-298 (303)
352 KOG1464 COP9 signalosome, subu 63.5 88 0.0019 26.1 17.5 155 32-187 67-258 (440)
353 cd08819 CARD_MDA5_2 Caspase ac 63.2 40 0.00087 22.5 5.6 66 84-150 21-86 (88)
354 COG4649 Uncharacterized protei 62.9 70 0.0015 24.8 9.9 119 40-158 68-195 (221)
355 PRK11639 zinc uptake transcrip 62.3 55 0.0012 25.1 7.3 55 91-146 17-76 (169)
356 KOG1941 Acetylcholine receptor 61.7 58 0.0013 28.4 7.7 155 32-187 85-272 (518)
357 KOG1464 COP9 signalosome, subu 61.4 96 0.0021 25.9 14.5 84 42-125 39-130 (440)
358 PF10579 Rapsyn_N: Rapsyn N-te 61.3 35 0.00075 22.3 5.0 48 265-334 18-65 (80)
359 KOG4077 Cytochrome c oxidase, 60.8 22 0.00048 25.6 4.4 47 48-94 67-113 (149)
360 KOG4648 Uncharacterized conser 60.7 20 0.00044 30.8 4.9 45 138-182 105-152 (536)
361 PF10155 DUF2363: Uncharacteri 60.2 63 0.0014 23.4 6.8 49 43-91 76-124 (126)
362 PF09477 Type_III_YscG: Bacter 59.7 58 0.0013 22.8 7.9 49 138-188 48-96 (116)
363 PF08311 Mad3_BUB1_I: Mad3/BUB 58.8 67 0.0014 23.2 7.7 44 271-337 81-124 (126)
364 KOG1550 Extracellular protein 58.8 1.6E+02 0.0036 27.7 12.5 176 46-229 228-428 (552)
365 smart00028 TPR Tetratricopepti 58.3 20 0.00043 17.0 3.7 27 255-281 3-29 (34)
366 PF12926 MOZART2: Mitotic-spin 58.0 52 0.0011 21.9 5.4 41 86-126 29-69 (88)
367 PF11846 DUF3366: Domain of un 57.6 40 0.00087 26.4 6.1 58 37-94 115-173 (193)
368 KOG2297 Predicted translation 57.3 1.2E+02 0.0027 25.8 9.1 179 15-218 141-341 (412)
369 KOG0991 Replication factor C, 57.2 1.1E+02 0.0023 25.1 8.9 138 137-289 137-274 (333)
370 KOG2066 Vacuolar assembly/sort 57.0 1.2E+02 0.0027 29.4 9.6 42 311-352 646-699 (846)
371 PF02259 FAT: FAT domain; Int 56.6 1.3E+02 0.0029 26.0 12.3 67 159-227 144-213 (352)
372 KOG1941 Acetylcholine receptor 55.8 1.4E+02 0.0031 26.2 11.9 203 25-227 38-275 (518)
373 COG4785 NlpI Lipoprotein NlpI, 55.0 1.1E+02 0.0024 24.7 12.5 29 199-227 238-266 (297)
374 PRK09462 fur ferric uptake reg 54.6 62 0.0014 24.1 6.4 36 81-116 33-68 (148)
375 PF09454 Vps23_core: Vps23 cor 53.9 39 0.00085 21.1 4.3 50 250-300 5-54 (65)
376 COG2976 Uncharacterized protei 53.8 1.1E+02 0.0024 24.2 8.8 124 129-283 53-189 (207)
377 KOG2063 Vacuolar assembly/sort 53.7 2.5E+02 0.0053 28.2 16.0 112 32-143 506-639 (877)
378 KOG2422 Uncharacterized conser 53.5 2E+02 0.0043 27.1 10.3 91 35-125 347-444 (665)
379 cd00280 TRFH Telomeric Repeat 53.0 98 0.0021 24.2 7.0 58 269-343 85-143 (200)
380 KOG3636 Uncharacterized conser 52.9 1.8E+02 0.0038 26.3 10.2 74 191-264 176-271 (669)
381 cd00280 TRFH Telomeric Repeat 52.8 99 0.0022 24.2 7.0 19 74-92 120-138 (200)
382 PF14689 SPOB_a: Sensor_kinase 52.3 29 0.00063 21.4 3.5 30 252-281 22-51 (62)
383 PRK09462 fur ferric uptake reg 51.7 68 0.0015 23.9 6.2 12 115-126 32-43 (148)
384 KOG2582 COP9 signalosome, subu 51.4 1.7E+02 0.0037 25.7 11.8 195 32-229 104-347 (422)
385 PRK09687 putative lyase; Provi 50.5 1.5E+02 0.0033 25.0 19.2 20 158-177 203-222 (280)
386 cd07153 Fur_like Ferric uptake 50.5 40 0.00087 23.7 4.6 47 36-82 6-52 (116)
387 PF09868 DUF2095: Uncharacteri 48.7 52 0.0011 23.1 4.5 24 37-60 68-91 (128)
388 PRK13342 recombination factor 48.6 2.1E+02 0.0045 25.8 12.7 49 254-302 228-279 (413)
389 KOG0403 Neoplastic transformat 48.5 2.1E+02 0.0046 26.0 9.5 62 165-229 513-574 (645)
390 COG5159 RPN6 26S proteasome re 48.3 1.7E+02 0.0037 24.8 9.3 118 36-153 9-148 (421)
391 PF11663 Toxin_YhaV: Toxin wit 47.4 28 0.00061 25.4 3.2 32 173-208 107-138 (140)
392 PF09454 Vps23_core: Vps23 cor 47.3 31 0.00068 21.5 3.1 49 62-111 5-53 (65)
393 PF13934 ELYS: Nuclear pore co 47.2 1.5E+02 0.0033 24.1 7.9 100 32-141 78-183 (226)
394 PF10475 DUF2450: Protein of u 46.3 1.2E+02 0.0026 25.8 7.5 109 71-185 104-221 (291)
395 PF01475 FUR: Ferric uptake re 46.0 39 0.00085 24.0 4.0 46 35-80 12-57 (120)
396 cd07153 Fur_like Ferric uptake 45.1 46 0.00099 23.4 4.2 49 258-306 5-53 (116)
397 PF07218 RAP1: Rhoptry-associa 44.8 67 0.0015 29.6 5.8 53 18-76 608-660 (782)
398 PF09670 Cas_Cas02710: CRISPR- 44.6 1.9E+02 0.0042 25.7 8.8 51 42-93 143-197 (379)
399 PF10475 DUF2450: Protein of u 44.3 93 0.002 26.4 6.6 110 105-218 103-217 (291)
400 PF08631 SPO22: Meiosis protei 44.3 1.9E+02 0.0042 24.3 19.8 121 3-126 11-147 (278)
401 KOG1498 26S proteasome regulat 43.8 2.4E+02 0.0051 25.1 12.7 41 254-294 213-254 (439)
402 KOG0991 Replication factor C, 43.4 1.9E+02 0.004 23.9 9.4 48 149-199 227-274 (333)
403 KOG0890 Protein kinase of the 43.2 5.4E+02 0.012 29.2 14.4 55 166-222 1388-1444(2382)
404 PF10255 Paf67: RNA polymerase 43.2 1.2E+02 0.0026 27.2 7.1 21 106-126 128-148 (404)
405 KOG2297 Predicted translation 42.7 2.2E+02 0.0047 24.4 12.5 21 253-273 321-341 (412)
406 PF04090 RNA_pol_I_TF: RNA pol 41.9 1.7E+02 0.0036 23.3 7.0 27 32-58 43-69 (199)
407 smart00804 TAP_C C-terminal do 41.4 28 0.0006 21.6 2.2 23 43-65 38-61 (63)
408 PF02847 MA3: MA3 domain; Int 41.1 32 0.0007 24.0 2.9 60 34-95 6-67 (113)
409 COG4785 NlpI Lipoprotein NlpI, 41.0 2E+02 0.0043 23.4 7.3 30 254-283 238-267 (297)
410 KOG4567 GTPase-activating prot 40.9 1.7E+02 0.0036 25.1 7.1 73 50-127 263-345 (370)
411 PHA02875 ankyrin repeat protei 40.8 2.7E+02 0.0058 24.9 13.9 16 6-21 16-31 (413)
412 smart00777 Mad3_BUB1_I Mad3/BU 40.3 65 0.0014 23.3 4.3 45 270-337 80-124 (125)
413 PF01475 FUR: Ferric uptake re 40.2 37 0.0008 24.1 3.1 50 257-306 11-60 (120)
414 KOG4234 TPR repeat-containing 40.0 1.2E+02 0.0026 24.2 5.8 79 110-188 105-195 (271)
415 KOG2659 LisH motif-containing 39.9 2E+02 0.0044 23.3 7.5 96 61-158 22-131 (228)
416 PF10255 Paf67: RNA polymerase 39.5 1.2E+02 0.0026 27.2 6.5 66 202-280 126-191 (404)
417 PF12862 Apc5: Anaphase-promot 39.2 1.1E+02 0.0025 20.5 5.3 55 40-94 8-70 (94)
418 PF09868 DUF2095: Uncharacteri 39.0 63 0.0014 22.8 3.8 40 70-110 66-105 (128)
419 PF02607 B12-binding_2: B12 bi 39.0 63 0.0014 20.7 3.9 40 264-303 12-51 (79)
420 KOG2659 LisH motif-containing 38.4 1.9E+02 0.0042 23.5 6.9 91 97-187 23-129 (228)
421 COG5108 RPO41 Mitochondrial DN 35.7 1.8E+02 0.004 27.9 7.2 72 35-109 33-112 (1117)
422 KOG2753 Uncharacterized conser 35.5 3E+02 0.0064 23.9 9.8 165 151-350 53-227 (378)
423 PF08311 Mad3_BUB1_I: Mad3/BUB 35.3 1.7E+02 0.0037 21.1 7.5 44 82-125 80-124 (126)
424 KOG1258 mRNA processing protei 35.0 3.9E+02 0.0086 25.2 14.8 176 32-212 299-489 (577)
425 PF02184 HAT: HAT (Half-A-TPR) 34.9 15 0.00034 19.1 0.3 22 327-348 2-25 (32)
426 KOG1258 mRNA processing protei 34.3 4.1E+02 0.0088 25.1 22.0 85 41-126 90-177 (577)
427 PF03943 TAP_C: TAP C-terminal 34.1 22 0.00047 20.9 0.9 24 43-66 26-50 (51)
428 PF07575 Nucleopor_Nup85: Nup8 33.9 2.5E+02 0.0054 26.6 8.3 40 108-147 305-344 (566)
429 PF08424 NRDE-2: NRDE-2, neces 33.8 3.1E+02 0.0068 23.7 9.9 79 45-125 46-127 (321)
430 smart00386 HAT HAT (Half-A-TPR 33.6 59 0.0013 15.9 2.6 14 80-93 2-15 (33)
431 cd08326 CARD_CASP9 Caspase act 33.2 1.5E+02 0.0032 19.7 4.8 37 144-180 44-80 (84)
432 PRK08691 DNA polymerase III su 33.0 2.6E+02 0.0057 27.3 8.0 100 178-288 181-280 (709)
433 cd08326 CARD_CASP9 Caspase act 32.8 83 0.0018 20.9 3.6 33 238-270 46-78 (84)
434 PF11817 Foie-gras_1: Foie gra 32.7 85 0.0018 25.9 4.5 53 135-187 183-244 (247)
435 PF10474 DUF2451: Protein of u 32.7 2.8E+02 0.006 22.7 8.3 21 22-44 125-145 (234)
436 PRK06645 DNA polymerase III su 32.6 2.7E+02 0.0059 26.0 8.0 104 178-289 190-293 (507)
437 COG4003 Uncharacterized protei 32.1 90 0.0019 20.5 3.4 30 70-100 36-65 (98)
438 PF06552 TOM20_plant: Plant sp 32.0 2.5E+02 0.0054 22.0 7.2 118 46-195 7-139 (186)
439 PF04910 Tcf25: Transcriptiona 31.8 3.6E+02 0.0079 23.8 10.3 119 4-125 13-164 (360)
440 PF14853 Fis1_TPR_C: Fis1 C-te 31.7 1.2E+02 0.0025 18.1 5.1 34 259-294 7-40 (53)
441 PRK14958 DNA polymerase III su 31.6 3.4E+02 0.0074 25.4 8.5 99 179-288 182-280 (509)
442 COG5108 RPO41 Mitochondrial DN 31.5 1.7E+02 0.0036 28.1 6.3 75 135-210 33-115 (1117)
443 PF11768 DUF3312: Protein of u 31.3 3E+02 0.0066 25.7 7.8 113 32-161 410-525 (545)
444 PF12796 Ank_2: Ankyrin repeat 31.1 1.5E+02 0.0033 19.2 5.8 73 40-122 4-78 (89)
445 KOG0037 Ca2+-binding protein, 30.8 70 0.0015 25.6 3.4 49 5-53 144-199 (221)
446 KOG0890 Protein kinase of the 30.6 8.6E+02 0.019 27.8 18.5 52 74-126 1458-1509(2382)
447 PHA03100 ankyrin repeat protei 30.5 4.2E+02 0.0092 24.2 15.6 177 36-230 38-242 (480)
448 cd07229 Pat_TGL3_like Triacylg 30.3 3.2E+02 0.0069 24.5 7.7 42 7-55 101-142 (391)
449 smart00544 MA3 Domain in DAP-5 30.3 1.9E+02 0.0041 20.1 6.5 60 34-95 6-67 (113)
450 PF02607 B12-binding_2: B12 bi 29.3 97 0.0021 19.8 3.5 40 172-213 12-51 (79)
451 COG2178 Predicted RNA-binding 29.2 2.3E+02 0.005 22.4 5.8 18 264-281 132-149 (204)
452 PF11838 ERAP1_C: ERAP1-like C 28.9 3.7E+02 0.0079 22.9 9.9 27 100-126 201-227 (324)
453 PF11123 DNA_Packaging_2: DNA 28.5 98 0.0021 19.9 3.1 14 175-188 59-72 (82)
454 PRK10941 hypothetical protein; 28.3 3.6E+02 0.0078 22.7 7.8 61 32-94 183-244 (269)
455 PRK09857 putative transposase; 28.0 3.8E+02 0.0083 22.8 8.1 67 201-288 209-275 (292)
456 PRK14956 DNA polymerase III su 27.7 4.9E+02 0.011 24.1 8.6 101 179-289 184-284 (484)
457 KOG4234 TPR repeat-containing 27.5 3E+02 0.0064 22.1 6.2 22 261-282 176-197 (271)
458 PF04910 Tcf25: Transcriptiona 27.5 4.3E+02 0.0094 23.3 10.6 62 32-93 105-167 (360)
459 PRK14700 recombination factor 27.1 3.3E+02 0.0071 23.3 6.9 38 77-114 138-175 (300)
460 cd08315 Death_TRAILR_DR4_DR5 D 27.0 2.1E+02 0.0046 19.5 5.5 48 46-95 47-94 (96)
461 smart00544 MA3 Domain in DAP-5 26.7 1.8E+02 0.004 20.1 4.8 64 257-328 6-69 (113)
462 PF09797 NatB_MDM20: N-acetylt 26.5 3.8E+02 0.0082 23.6 7.7 43 83-126 201-243 (365)
463 PF09670 Cas_Cas02710: CRISPR- 26.3 4.7E+02 0.01 23.3 9.3 52 74-126 140-195 (379)
464 PF12816 Vps8: Golgi CORVET co 26.1 2.7E+02 0.0058 22.0 6.0 58 99-156 21-78 (196)
465 PF11491 DUF3213: Protein of u 26.1 22 0.00047 23.2 -0.1 16 160-175 23-38 (88)
466 PF07443 HARP: HepA-related pr 26.0 35 0.00076 20.5 0.8 33 44-76 6-38 (55)
467 PF12816 Vps8: Golgi CORVET co 25.8 1.3E+02 0.0028 23.8 4.2 65 157-228 18-82 (196)
468 smart00777 Mad3_BUB1_I Mad3/BU 25.7 2E+02 0.0044 20.8 4.8 43 3-54 81-123 (125)
469 PF11817 Foie-gras_1: Foie gra 25.5 1.4E+02 0.0029 24.7 4.5 48 105-152 183-240 (247)
470 KOG0292 Vesicle coat complex C 25.4 4.9E+02 0.011 26.2 8.3 126 42-188 655-780 (1202)
471 COG1747 Uncharacterized N-term 25.3 5.7E+02 0.012 24.0 11.9 167 160-340 65-233 (711)
472 COG3107 LppC Putative lipoprot 25.3 4.6E+02 0.01 24.6 7.7 91 32-123 64-159 (604)
473 PF06552 TOM20_plant: Plant sp 25.3 2.7E+02 0.0059 21.8 5.6 79 32-112 30-125 (186)
474 cd07229 Pat_TGL3_like Triacylg 25.0 32 0.00069 30.5 0.7 36 183-220 101-139 (391)
475 KOG4279 Serine/threonine prote 24.7 5.8E+02 0.013 25.2 8.5 26 262-289 296-321 (1226)
476 PRK14963 DNA polymerase III su 24.4 4.7E+02 0.01 24.4 8.1 99 176-286 176-274 (504)
477 cd08812 CARD_RIG-I_like Caspas 23.8 2.3E+02 0.005 18.9 6.0 47 70-119 39-85 (88)
478 cd08323 CARD_APAF1 Caspase act 23.8 1.8E+02 0.0038 19.4 3.9 34 237-270 43-76 (86)
479 KOG0686 COP9 signalosome, subu 23.6 5.5E+02 0.012 23.2 11.0 153 32-188 152-331 (466)
480 COG2405 Predicted nucleic acid 23.6 1.1E+02 0.0024 22.6 3.0 38 72-109 116-153 (157)
481 COG2909 MalT ATP-dependent tra 23.5 7.7E+02 0.017 24.8 22.3 29 258-286 623-651 (894)
482 PF01335 DED: Death effector d 23.4 2.2E+02 0.0048 18.6 4.9 41 82-123 37-77 (84)
483 PF11768 DUF3312: Protein of u 23.2 6.3E+02 0.014 23.8 9.4 54 135-188 413-471 (545)
484 KOG4521 Nuclear pore complex, 23.2 4.5E+02 0.0097 27.4 7.8 78 253-331 983-1073(1480)
485 PF00627 UBA: UBA/TS-N domain; 23.0 1.3E+02 0.0029 15.9 3.5 34 6-53 4-37 (37)
486 KOG2034 Vacuolar sorting prote 23.0 7.9E+02 0.017 24.7 13.8 86 108-200 366-452 (911)
487 COG4259 Uncharacterized protei 23.0 2.3E+02 0.0049 19.7 4.2 41 85-125 57-97 (121)
488 cd08332 CARD_CASP2 Caspase act 22.9 1.6E+02 0.0035 19.8 3.7 30 239-268 51-80 (90)
489 PF12926 MOZART2: Mitotic-spin 22.6 2.5E+02 0.0054 18.8 6.3 44 51-94 29-72 (88)
490 PLN03025 replication factor C 22.4 5E+02 0.011 22.3 8.2 84 2-98 162-257 (319)
491 cd00045 DED The Death Effector 22.3 1.6E+02 0.0034 19.1 3.4 39 80-119 35-73 (77)
492 PF12554 MOZART1: Mitotic-spin 22.3 1.6E+02 0.0034 17.2 2.9 28 260-287 11-38 (48)
493 KOG4507 Uncharacterized conser 22.2 5.8E+02 0.013 24.4 7.9 125 47-172 590-721 (886)
494 PRK15180 Vi polysaccharide bio 22.1 4.4E+02 0.0095 24.4 6.9 109 4-126 309-417 (831)
495 TIGR03581 EF_0839 conserved hy 21.8 2.4E+02 0.0052 22.7 4.8 82 45-126 136-234 (236)
496 smart00031 DED Death effector 21.8 2.1E+02 0.0046 18.5 4.0 41 81-122 37-77 (79)
497 PRK07003 DNA polymerase III su 21.8 7.3E+02 0.016 24.8 8.8 99 178-287 181-279 (830)
498 PF07720 TPR_3: Tetratricopept 21.7 1.5E+02 0.0032 15.9 3.2 22 315-336 4-25 (36)
499 COG2405 Predicted nucleic acid 21.6 1.9E+02 0.004 21.5 3.8 40 36-75 115-154 (157)
500 PF04034 DUF367: Domain of unk 21.2 2.9E+02 0.0063 20.1 4.7 51 101-151 67-120 (127)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.8e-58 Score=432.17 Aligned_cols=347 Identities=21% Similarity=0.342 Sum_probs=332.6
Q ss_pred hhhHHHHHHHHHhc-cccchhhhhhHhhhhh-------------------------hHHHHHHHHHhcCChhHHHHHHHH
Q 038758 2 ELGIQVHAHLIVCG-VELCAFLGSQLLEVFC-------------------------NWTSMMGMYNVLGYYEEIVNLFYL 55 (354)
Q Consensus 2 ~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~-------------------------~y~~li~~~~~~~~~~~a~~~~~~ 55 (354)
++|.++++.|...+ +.|+..+|+.++.+|+ +||.|++.|++.|++++|.++|++
T Consensus 104 ~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~ 183 (697)
T PLN03081 104 REALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE 183 (697)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhc
Confidence 57888999998865 7899999999999987 999999999999999999999999
Q ss_pred HHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh-----cccc
Q 038758 56 MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-----DQDF 130 (354)
Q Consensus 56 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-----~~~~ 130 (354)
|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|+.+.+.+++..+ .++.
T Consensus 184 m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~ 259 (697)
T PLN03081 184 MP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDT 259 (697)
T ss_pred CC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccc
Confidence 96 48999999999999999999999999999999999999999999999999999999999998887 6899
Q ss_pred chhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhh
Q 038758 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210 (354)
Q Consensus 131 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~ 210 (354)
.+|++|+++|++.|++++|.++|++|.++|+.+||++|.+|++.|++++|.++|++|. ..|+.||..||+.++.+|++
T Consensus 260 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~--~~g~~pd~~t~~~ll~a~~~ 337 (697)
T PLN03081 260 FVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMR--DSGVSIDQFTFSIMIRIFSR 337 (697)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHH--HcCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hcCccccchhhhHhhhhcccccc-----------ccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 038758 211 VKGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279 (354)
Q Consensus 211 ~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 279 (354)
.|+++.|.+++..+.+.|+.++. ++|++++|.++|++|..||..+||+||.+|++.|+.++|+++|++|
T Consensus 338 ~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M 417 (697)
T PLN03081 338 LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERM 417 (697)
T ss_pred ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999988776 8999999999999999999999999999999999999999999999
Q ss_pred HHcCcCCCHhhHHHHHHHhhccCcccCc------------cccchhHHHHHHHHHHhcCChhHHHHHhhcCCC-CCcccH
Q 038758 280 IVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH-KNLVSW 346 (354)
Q Consensus 280 ~~~g~~p~~~t~~~li~~~~~~~~~~~~------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~ 346 (354)
.+.|+.||..||+.++.+|++.|.+++| +.|+..+|++++++|++.|++++|.+++++|.. ||..+|
T Consensus 418 ~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~ 497 (697)
T PLN03081 418 IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMW 497 (697)
T ss_pred HHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHH
Confidence 9999999999999999999999998776 789999999999999999999999999999975 999999
Q ss_pred HHhhhhcC
Q 038758 347 NVMISVYG 354 (354)
Q Consensus 347 ~~li~~~~ 354 (354)
++||.+|+
T Consensus 498 ~~Ll~a~~ 505 (697)
T PLN03081 498 AALLTACR 505 (697)
T ss_pred HHHHHHHH
Confidence 99999984
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.6e-58 Score=440.91 Aligned_cols=347 Identities=28% Similarity=0.538 Sum_probs=320.6
Q ss_pred hhHHHHHHHHHhccccchhhhhhHhhhhh---------------------hHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 038758 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNVLGYYEEIVNLFYLMIDKGV 61 (354)
Q Consensus 3 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~---------------------~y~~li~~~~~~~~~~~a~~~~~~m~~~~~ 61 (354)
.+.+++.+|.+.|+.|++.++|+||.+|+ +||+||.+|++.|++++|+++|++|...|+
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~ 284 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 45667777777777777777777887777 999999999999999999999999999999
Q ss_pred cCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh---------------
Q 038758 62 RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM--------------- 126 (354)
Q Consensus 62 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--------------- 126 (354)
.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~ 364 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988888888888888
Q ss_pred --------------------------------------------------------ccccchhhHHHHHHHhcCchhHHH
Q 038758 127 --------------------------------------------------------DQDFLVNNSLIDFYAKCRYLKVSH 150 (354)
Q Consensus 127 --------------------------------------------------------~~~~~~~~~li~~~~~~~~~~~a~ 150 (354)
.++..+||+|+++|++.|++++|.
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 345567777888888888888899
Q ss_pred HHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccc
Q 038758 151 CKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH 230 (354)
Q Consensus 151 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 230 (354)
++|++|.++|..+||.+|.+|++.|+.++|.++|++|. . ++.||..||+.+|.+|++.|+++.+.+++..+.+.|+.
T Consensus 445 ~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~--~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~ 521 (857)
T PLN03077 445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML--L-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521 (857)
T ss_pred HHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHH--h-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC
Confidence 99999988999999999999999999999999999996 4 69999999999999999999999999999999999988
Q ss_pred ccc-----------ccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhh
Q 038758 231 LST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299 (354)
Q Consensus 231 ~~~-----------~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 299 (354)
++. ++|++++|+.+|+.+ .||..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.+|.+|+
T Consensus 522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 600 (857)
T PLN03077 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600 (857)
T ss_pred ccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Confidence 776 999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred ccCcccCc------------cccchhHHHHHHHHHHhcCChhHHHHHhhcCC-CCCcccHHHhhhhc
Q 038758 300 KLAALPQG------------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP-HKNLVSWNVMISVY 353 (354)
Q Consensus 300 ~~~~~~~~------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~li~~~ 353 (354)
+.|.+++| +.|+..+|++++++|++.|++++|.+++++|. +||..+|++||++|
T Consensus 601 ~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac 667 (857)
T PLN03077 601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNAC 667 (857)
T ss_pred hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 99998876 78999999999999999999999999999996 59999999999987
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.6e-57 Score=428.81 Aligned_cols=349 Identities=14% Similarity=0.215 Sum_probs=331.2
Q ss_pred hhhHHHHHHHHHhccc-cchhhhhhHhhhhh---------------------hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038758 2 ELGIQVHAHLIVCGVE-LCAFLGSQLLEVFC---------------------NWTSMMGMYNVLGYYEEIVNLFYLMIDK 59 (354)
Q Consensus 2 ~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~---------------------~y~~li~~~~~~~~~~~a~~~~~~m~~~ 59 (354)
++|.+++++|.+.|+. |+..+++.++..|+ +||.||++|++.|+++.|.++|++|.+.
T Consensus 387 ~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~ 466 (1060)
T PLN03218 387 KDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEA 466 (1060)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc
Confidence 5789999999999965 67777777777775 9999999999999999999999999999
Q ss_pred CCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh-----ccccchhh
Q 038758 60 GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-----DQDFLVNN 134 (354)
Q Consensus 60 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-----~~~~~~~~ 134 (354)
|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++| .|+..+|+
T Consensus 467 Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYn 546 (1060)
T PLN03218 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN 546 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 78999999
Q ss_pred HHHHHHHhcCchhHHHHHhccCC------CCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHh
Q 038758 135 SLIDFYAKCRYLKVSHCKFSKIK------QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208 (354)
Q Consensus 135 ~li~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~ 208 (354)
.||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|. +.|+.|+..+|+.+|.+|
T Consensus 547 sLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~--e~gi~p~~~tynsLI~ay 624 (1060)
T PLN03218 547 ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH--EYNIKGTPEVYTIAVNSC 624 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HcCCCCChHHHHHHHHHH
Confidence 99999999999999999999995 4899999999999999999999999999999 999999999999999999
Q ss_pred hhhcCccccchhhhHhhhhcccccc-----------ccchhHHHHHHhcccC----CCCcchHHHHHHHHHhcCCHHHHH
Q 038758 209 AQVKGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLS----TRDVVVWNSIISAFVRSGQVVDAL 273 (354)
Q Consensus 209 ~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~ 273 (354)
++.|++++|..+|+.|.+.|+.++. +.|++++|.++|+.|. .||..+|+++|.+|++.|++++|.
T Consensus 625 ~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~ 704 (1060)
T PLN03218 625 SQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL 704 (1060)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999999999988876 8899999999999986 689999999999999999999999
Q ss_pred HHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc-----------cccchhHHHHHHHHHHhcCChhHHHHHhhcCCC--
Q 038758 274 DLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH-- 340 (354)
Q Consensus 274 ~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 340 (354)
++|++|.+.|+.||..+|+.+|.+|++.|++++| +.||..+|++++.+|++.|++++|.++|++|.+
T Consensus 705 ~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 705 ELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999998876 889999999999999999999999999999986
Q ss_pred --CCcccHHHhhhh
Q 038758 341 --KNLVSWNVMISV 352 (354)
Q Consensus 341 --~~~~~~~~li~~ 352 (354)
||..+|+++|..
T Consensus 785 i~pd~~tynsLIgl 798 (1060)
T PLN03218 785 IKPNLVMCRCITGL 798 (1060)
T ss_pred CCCCHHHHHHHHHH
Confidence 999999999854
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4e-57 Score=433.70 Aligned_cols=346 Identities=22% Similarity=0.367 Sum_probs=315.5
Q ss_pred ChhhHHHHHHHHHhccccchhhhhhHhhhhh-------------------------hHHHHHHHHHhcCChhHHHHHHHH
Q 038758 1 MELGIQVHAHLIVCGVELCAFLGSQLLEVFC-------------------------NWTSMMGMYNVLGYYEEIVNLFYL 55 (354)
Q Consensus 1 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~-------------------------~y~~li~~~~~~~~~~~a~~~~~~ 55 (354)
+++|..++++|.+.|+.||..||+.+|++|+ +||+||.+|++.|++++|..+|++
T Consensus 168 ~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~ 247 (857)
T PLN03077 168 FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDR 247 (857)
T ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhc
Confidence 3689999999999999999999999999986 799999999999999999999999
Q ss_pred HHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh-----cccc
Q 038758 56 MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-----DQDF 130 (354)
Q Consensus 56 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-----~~~~ 130 (354)
|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..+ .|+.
T Consensus 248 m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~ 323 (857)
T PLN03077 248 MP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDV 323 (857)
T ss_pred CC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccch
Confidence 97 57899999999999999999999999999999999999999999999999999999999999998 7899
Q ss_pred chhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhh
Q 038758 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210 (354)
Q Consensus 131 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~ 210 (354)
.+||+|+.+|++.|++++|.++|++|..||..+||++|.+|++.|++++|.++|++|+ ..|+.||..||+.++.+|++
T Consensus 324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~--~~g~~Pd~~t~~~ll~a~~~ 401 (857)
T PLN03077 324 SVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALME--QDNVSPDEITIASVLSACAC 401 (857)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHH--HhCCCCCceeHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hcCccccchhhhHhhhhcccccc-----------ccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 038758 211 VKGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279 (354)
Q Consensus 211 ~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 279 (354)
.|+++.+.++++.+.+.|..++. ++|++++|.++|++|..+|..+||++|.+|++.|+.++|+++|++|
T Consensus 402 ~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m 481 (857)
T PLN03077 402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM 481 (857)
T ss_pred cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999988765 9999999999999999999999999999999999999999999999
Q ss_pred HHcCcCCCHhhHHHHHHHhhccCcccCc-----------c------------------------------ccchhHHHHH
Q 038758 280 IVANVKPNTVTIVSVLPACLKLAALPQG-----------L------------------------------GTGSFVWNAL 318 (354)
Q Consensus 280 ~~~g~~p~~~t~~~li~~~~~~~~~~~~-----------~------------------------------~~~~~~~~~l 318 (354)
.. +++||..||+.++.+|++.|+++.+ + .||..+||++
T Consensus 482 ~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~l 560 (857)
T PLN03077 482 LL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNIL 560 (857)
T ss_pred Hh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHH
Confidence 85 6999999999999999998887665 3 4455555555
Q ss_pred HHHHHhcCChhHHHHHhhcCCC----CCcccHHHhhhhc
Q 038758 319 IDMYGRCGAIQKSRKIFVLMPH----KNLVSWNVMISVY 353 (354)
Q Consensus 319 i~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~ 353 (354)
|.+|++.|+.++|.++|++|.+ ||.+||+.+|.+|
T Consensus 561 I~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 599 (857)
T PLN03077 561 LTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599 (857)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence 5566666666666666665554 5666666666555
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-56 Score=424.24 Aligned_cols=320 Identities=14% Similarity=0.207 Sum_probs=296.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
+||+||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.||.+|+
T Consensus 474 tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~ 553 (1060)
T PLN03218 474 LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHhh-------ccccchhhHHHHHHHhcCchhHHHHHhccCCC----CChhhhHHHHHHHHhCCChhHH
Q 038758 112 KCGRMEITSGLFEEM-------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ----KDLVSWNAMLAGYALGGFREEV 180 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a 180 (354)
+.|++++|.++|++| .|+..+|+++|.+|++.|++++|.++|++|.+ |+..+||.+|.+|++.|++++|
T Consensus 554 k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deA 633 (1060)
T PLN03218 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA 633 (1060)
T ss_pred HCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Confidence 999999999999998 47888999999999999999999999999975 6779999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc-----------ccchhHHHHHHhcccC
Q 038758 181 TNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLS 249 (354)
Q Consensus 181 ~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~~~a~~~~~~~~ 249 (354)
.++|++|. ..|+.||..||+.++.+|++.|++++|.++++.|.+.|+.++. +.|++++|.++|+.|.
T Consensus 634 l~lf~eM~--~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 634 LSIYDDMK--KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHHHHHHH--HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999 8999999999999999999999999999999999999988876 8999999999999884
Q ss_pred ----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc-----------cccchhH
Q 038758 250 ----TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-----------LGTGSFV 314 (354)
Q Consensus 250 ----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~-----------~~~~~~~ 314 (354)
.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|+++.| +.||..+
T Consensus 712 ~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~t 791 (1060)
T PLN03218 712 SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVM 791 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 7999999999999999999999999999999999999999999999999999998776 8999999
Q ss_pred HHHHHHHHH----hcC-------------------ChhHHHHHhhcCCC----CCcccHHHhhhhc
Q 038758 315 WNALIDMYG----RCG-------------------AIQKSRKIFVLMPH----KNLVSWNVMISVY 353 (354)
Q Consensus 315 ~~~li~~~~----~~g-------------------~~~~A~~~~~~m~~----~~~~~~~~li~~~ 353 (354)
|++++..|. +++ ..++|..+|++|.+ ||.+||+.+|.++
T Consensus 792 ynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl 857 (1060)
T PLN03218 792 CRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCL 857 (1060)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Confidence 999997643 222 34679999999987 9999999999554
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.3e-54 Score=405.75 Aligned_cols=351 Identities=16% Similarity=0.267 Sum_probs=333.9
Q ss_pred hhhHHHHHHHHHhccccchhhhhhHhhhhh---------------------hHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038758 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC---------------------NWTSMMGMYNVLGYYEEIVNLFYLMIDKG 60 (354)
Q Consensus 2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~---------------------~y~~li~~~~~~~~~~~a~~~~~~m~~~~ 60 (354)
+.+.+++..|.+.|+.||+.+|+.|++.|+ +||++|.+|++.|++++|+++|++|.+.|
T Consensus 140 ~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g 219 (697)
T PLN03081 140 RCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDG 219 (697)
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 468999999999999999999999999998 89999999999999999999999999999
Q ss_pred CcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh-ccccchhhHHHHH
Q 038758 61 VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDF 139 (354)
Q Consensus 61 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~li~~ 139 (354)
+.|+..+|+.++.+|++.|+.+.+.+++..+.+.|+.||..+|++||++|+++|++++|.++|++| +++..+||++|.+
T Consensus 220 ~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~ 299 (697)
T PLN03081 220 SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAG 299 (697)
T ss_pred CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 6789999999999
Q ss_pred HHhcCchhHHHHHhccCC----CCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCcc
Q 038758 140 YAKCRYLKVSHCKFSKIK----QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215 (354)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~ 215 (354)
|++.|++++|.++|++|. .||..||+.++.+|++.|++++|.+++.+|. +.|+.||..+|+.++.+|++.|+++
T Consensus 300 y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~--~~g~~~d~~~~~~Li~~y~k~G~~~ 377 (697)
T PLN03081 300 YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI--RTGFPLDIVANTALVDLYSKWGRME 377 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHH--HhCCCCCeeehHHHHHHHHHCCCHH
Confidence 999999999999999995 4899999999999999999999999999999 9999999999999999999999999
Q ss_pred ccchhhhHhhhhcccccc-------ccchhHHHHHHhcccC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH-cC
Q 038758 216 LGKAIHGYVLRHHIHLST-------ACGFVICSCSVFNQLS----TRDVVVWNSIISAFVRSGQVVDALDLLRDVIV-AN 283 (354)
Q Consensus 216 ~a~~~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g 283 (354)
.|.++|+.|.+.+..... +.|+.++|.++|++|. .||..||++++.+|++.|+.++|.++|+.|.+ .|
T Consensus 378 ~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g 457 (697)
T PLN03081 378 DARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457 (697)
T ss_pred HHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 999999999875544333 8999999999999986 79999999999999999999999999999976 69
Q ss_pred cCCCHhhHHHHHHHhhccCcccCc--------cccchhHHHHHHHHHHhcCChhHHHHHhhcCCC--C-CcccHHHhhhh
Q 038758 284 VKPNTVTIVSVLPACLKLAALPQG--------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH--K-NLVSWNVMISV 352 (354)
Q Consensus 284 ~~p~~~t~~~li~~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~ 352 (354)
+.|+..+|+.++.+|++.|++++| +.|+..+|++|+.+|...|+++.|.++++++.+ | +..+|+.|++.
T Consensus 458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~ 537 (697)
T PLN03081 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNL 537 (697)
T ss_pred CCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHH
Confidence 999999999999999999999987 789999999999999999999999999999877 5 46799999998
Q ss_pred cC
Q 038758 353 YG 354 (354)
Q Consensus 353 ~~ 354 (354)
|+
T Consensus 538 y~ 539 (697)
T PLN03081 538 YN 539 (697)
T ss_pred HH
Confidence 75
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.88 E-value=3.4e-20 Score=181.04 Aligned_cols=314 Identities=10% Similarity=0.053 Sum_probs=230.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
+++.+...+.+.|++++|..+++++...+ +.+...+..+...+...|++++|.++++.+.+.. +.+...|..+..++.
T Consensus 535 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 612 (899)
T TIGR02917 535 AILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQL 612 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 66777778888888888888888887664 3455667778888888888888888888887654 556777888888888
Q ss_pred hcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHH
Q 038758 112 KCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLL 184 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~ 184 (354)
..|++++|...|+++ +.+...+..+...+.+.|++++|...|+++.+ .+..++..+...+...|++++|.+++
T Consensus 613 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 613 AAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888888877 34556677788888888888888888877654 34567778888888888888888888
Q ss_pred HHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc---------ccchhHHHHHHhcccC---CCC
Q 038758 185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST---------ACGFVICSCSVFNQLS---TRD 252 (354)
Q Consensus 185 ~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~~~---~~~ 252 (354)
+.+. ..+ +++...+..+...+.+.|++++|...+..+.+.+..... ..|+.++|...++... +.+
T Consensus 693 ~~~~--~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 769 (899)
T TIGR02917 693 KSLQ--KQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPND 769 (899)
T ss_pred HHHH--hhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 8886 332 445566777777788888888888888887776544432 6777788877777654 345
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc---------cc-cchhHHHHHHHHH
Q 038758 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LG-TGSFVWNALIDMY 322 (354)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~---------~~-~~~~~~~~li~~~ 322 (354)
...++.+...|.+.|+.++|.+.|+++.+.. +++...+..+...+...|+ .++ .. -+..++..+...+
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLL 847 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 6677777788888888888888888887654 4556677777777777777 444 22 2455666777777
Q ss_pred HhcCChhHHHHHhhcCCC--C-CcccHHHhhhh
Q 038758 323 GRCGAIQKSRKIFVLMPH--K-NLVSWNVMISV 352 (354)
Q Consensus 323 ~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~ 352 (354)
.+.|++++|.+.++++.+ | |..++..+..+
T Consensus 848 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 880 (899)
T TIGR02917 848 VEKGEADRALPLLRKAVNIAPEAAAIRYHLALA 880 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 888888888888887776 3 44555554443
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.88 E-value=3.7e-20 Score=180.75 Aligned_cols=300 Identities=8% Similarity=-0.001 Sum_probs=167.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.+..+...+.+.|++++|..+++.+.... +.+...|..+...+...|++++|.+.|+.+.+.. +.+...+..+..++.
T Consensus 569 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 646 (899)
T TIGR02917 569 PALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYA 646 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 44455556666666666666666665432 3344556666666666666666666666665543 334445556666666
Q ss_pred hcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHH
Q 038758 112 KCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLL 184 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~ 184 (354)
+.|++++|...|+++ +.+...+..+...+...|++++|.++++.+.+ .+...+..+...+.+.|++++|.+.|
T Consensus 647 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 726 (899)
T TIGR02917 647 VMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAY 726 (899)
T ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 666666666666655 23345555666666666666666666665543 23444555555666666666666666
Q ss_pred HHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc----------ccchhHHHHHHhcccC---CC
Q 038758 185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST----------ACGFVICSCSVFNQLS---TR 251 (354)
Q Consensus 185 ~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~---~~ 251 (354)
+.+. .. .|+..++..+..++.+.|+.++|...+..+.+....... ..|+.++|...|+++. ++
T Consensus 727 ~~~~--~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 802 (899)
T TIGR02917 727 RKAL--KR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD 802 (899)
T ss_pred HHHH--hh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC
Confidence 6655 22 233445555556666666666666666655554332221 4566666666665543 33
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc---------c-ccchhHHHHHHHH
Q 038758 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------L-GTGSFVWNALIDM 321 (354)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~---------~-~~~~~~~~~li~~ 321 (354)
+...++.+...+.+.|+ .+|+..+++..+.. +-+..++..+...+...|+++++ . +.+..++..+...
T Consensus 803 ~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 880 (899)
T TIGR02917 803 NAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALA 880 (899)
T ss_pred CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 44555666666666666 55666666655431 11223344455555556665554 1 2255566666666
Q ss_pred HHhcCChhHHHHHhhcCC
Q 038758 322 YGRCGAIQKSRKIFVLMP 339 (354)
Q Consensus 322 ~~~~g~~~~A~~~~~~m~ 339 (354)
+.+.|++++|.+++++|.
T Consensus 881 ~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 881 LLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHcCCHHHHHHHHHHHh
Confidence 666666666666666554
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=1.7e-19 Score=159.47 Aligned_cols=276 Identities=10% Similarity=0.039 Sum_probs=222.6
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCC---ceehhhHHHHHHhcCC
Q 038758 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN---ACVKRPLLDLFIKCGR 115 (354)
Q Consensus 39 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~ 115 (354)
.+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ...+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 4567899999999999999874 33556788899999999999999999999987532221 2467888999999999
Q ss_pred hhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CC------hhhhHHHHHHHHhCCChhHHHHH
Q 038758 116 MEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KD------LVSWNAMLAGYALGGFREEVTNL 183 (354)
Q Consensus 116 ~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~------~~~~~~li~~~~~~~~~~~a~~~ 183 (354)
++.|..+|+++ +.+..+++.++..+.+.|++++|.+.++.+.+ |+ ...+..+...+.+.|++++|.+.
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999 34567888999999999999999999998864 22 12355677788899999999999
Q ss_pred HHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHH
Q 038758 184 LDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAF 263 (354)
Q Consensus 184 ~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 263 (354)
|+++. ... +.+...+..+...+.+.|++++|..+++.+.+.+. .....+++.+..+|
T Consensus 203 ~~~al--~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--------------------~~~~~~~~~l~~~~ 259 (389)
T PRK11788 203 LKKAL--AAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDP--------------------EYLSEVLPKLMECY 259 (389)
T ss_pred HHHHH--hHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh--------------------hhHHHHHHHHHHHH
Confidence 99997 332 22345677778889999999999999998887643 22245678888999
Q ss_pred HhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc---------cccchhHHHHHHHHHHh---cCChhHH
Q 038758 264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LGTGSFVWNALIDMYGR---CGAIQKS 331 (354)
Q Consensus 264 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~---------~~~~~~~~~~li~~~~~---~g~~~~A 331 (354)
.+.|+.++|...++++.+. .|+...+..+...+.+.|+.+.+ ..|+...++.++..+.. .|+.+++
T Consensus 260 ~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a 337 (389)
T PRK11788 260 QALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKES 337 (389)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhH
Confidence 9999999999999998865 57777778888889999988877 56888888888888775 5689999
Q ss_pred HHHhhcCCC
Q 038758 332 RKIFVLMPH 340 (354)
Q Consensus 332 ~~~~~~m~~ 340 (354)
..++++|.+
T Consensus 338 ~~~~~~~~~ 346 (389)
T PRK11788 338 LLLLRDLVG 346 (389)
T ss_pred HHHHHHHHH
Confidence 999998874
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=5.7e-19 Score=156.13 Aligned_cols=257 Identities=11% Similarity=0.070 Sum_probs=210.6
Q ss_pred HHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccc--------cchhhHHHHHHHhc
Q 038758 72 YKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQD--------FLVNNSLIDFYAKC 143 (354)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~li~~~~~~ 143 (354)
...+...|++++|.+.|+.+.+.+ +.+..++..+...+...|++++|..+++.+... ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334568899999999999999875 556678999999999999999999999988221 24577889999999
Q ss_pred CchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCc----chHHHHHHHhhhhcCccc
Q 038758 144 RYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT----ISLSGVLAACAQVKGVKL 216 (354)
Q Consensus 144 ~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~----~t~~~ll~~~~~~~~~~~ 216 (354)
|++++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+. ..+..+.. ..+..+...+.+.|++++
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLE--KLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHH--HhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999875 456789999999999999999999999997 54433221 234556667778899999
Q ss_pred cchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHH
Q 038758 217 GKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296 (354)
Q Consensus 217 a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 296 (354)
|...++++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+......++..+..
T Consensus 199 A~~~~~~al~~~---------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~ 257 (389)
T PRK11788 199 ARALLKKALAAD---------------------PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLME 257 (389)
T ss_pred HHHHHHHHHhHC---------------------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHH
Confidence 999888877654 23456778888999999999999999999986542222456788999
Q ss_pred HhhccCcccCc---------cccchhHHHHHHHHHHhcCChhHHHHHhhcCCC--CCcccHHHhhhh
Q 038758 297 ACLKLAALPQG---------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH--KNLVSWNVMISV 352 (354)
Q Consensus 297 ~~~~~~~~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~ 352 (354)
++...|+.+++ ..|+...+..+...+.+.|++++|.++++++.+ |+..+++.++..
T Consensus 258 ~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~ 324 (389)
T PRK11788 258 CYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDY 324 (389)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 99999999887 567777789999999999999999999998876 998888887764
No 11
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=2.6e-15 Score=124.65 Aligned_cols=324 Identities=12% Similarity=0.045 Sum_probs=221.6
Q ss_pred hhhHHHHHHHHHhccccchhhhhhHhhhhh-----------------------------------------------hHH
Q 038758 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC-----------------------------------------------NWT 34 (354)
Q Consensus 2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~-----------------------------------------------~y~ 34 (354)
..+.-+++.|.+.|...++.+.-.|++.-+ +|.
T Consensus 132 KDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~et~s 211 (625)
T KOG4422|consen 132 KDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDETVS 211 (625)
T ss_pred chhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCchhHH
Confidence 456778899999998888888877777666 888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcC
Q 038758 35 SMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG 114 (354)
Q Consensus 35 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 114 (354)
+||.+.|+--..+.|.+++++-.....+.+..+||.+|.+-. +...+++..+|......||..|+|+++++.++.|
T Consensus 212 ~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg 287 (625)
T KOG4422|consen 212 IMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFG 287 (625)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhc
Confidence 999999998888999999988888877888888888887643 2233788888888888899999999999888888
Q ss_pred ChhHHHHHHHhh---------ccccchhhHHHHHHHhcCchhH-HHHHhccCC--------C----CChhhhHHHHHHHH
Q 038758 115 RMEITSGLFEEM---------DQDFLVNNSLIDFYAKCRYLKV-SHCKFSKIK--------Q----KDLVSWNAMLAGYA 172 (354)
Q Consensus 115 ~~~~a~~~~~~~---------~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~--------~----~~~~~~~~li~~~~ 172 (354)
.++.|...+-+. +|+..+|..+|.-+++.++..+ |..+..++. + .|..-|...|..|.
T Consensus 288 ~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~ 367 (625)
T KOG4422|consen 288 KFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICS 367 (625)
T ss_pred chHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHH
Confidence 887766544433 6677777777777777666533 333332222 1 23444566666666
Q ss_pred hCCChhHHHHHHHHHHhhhcC---CCCCc---chHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhc
Q 038758 173 LGGFREEVTNLLDEMEMIQTD---MQPNT---ISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFN 246 (354)
Q Consensus 173 ~~~~~~~a~~~~~~m~~~~~~---~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 246 (354)
+..+.+.|.++-.-.+. ..+ +.|+. .=|..+....|+....+.-...|+.+.-.-.
T Consensus 368 ~l~d~~LA~~v~~ll~t-g~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y----------------- 429 (625)
T KOG4422|consen 368 SLRDLELAYQVHGLLKT-GDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY----------------- 429 (625)
T ss_pred HhhhHHHHHHHHHHHHc-CCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee-----------------
Confidence 66777666666555431 111 22321 1244455555555555555555555444333
Q ss_pred ccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccC-cccC-------------------
Q 038758 247 QLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA-ALPQ------------------- 306 (354)
Q Consensus 247 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~-~~~~------------------- 306 (354)
-|+..+-..++++..-.|+++-.-++|.+++..|-.-+.....-++.-+++.. ....
T Consensus 430 ---~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e 506 (625)
T KOG4422|consen 430 ---FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKE 506 (625)
T ss_pred ---cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 56777777788888888999999999999988886555555555555555544 1110
Q ss_pred ----------ccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC-----CCcccHHHhh
Q 038758 307 ----------GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH-----KNLVSWNVMI 350 (354)
Q Consensus 307 ----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~li 350 (354)
+.+.+....+...-.+.|.|+.++|.++|..+.+ |.....|+|+
T Consensus 507 ~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~ 565 (625)
T KOG4422|consen 507 AYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMA 565 (625)
T ss_pred HHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHH
Confidence 0455666778888899999999999999998843 5555666543
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.72 E-value=1.9e-15 Score=140.88 Aligned_cols=300 Identities=8% Similarity=-0.054 Sum_probs=205.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhc
Q 038758 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKC 113 (354)
Q Consensus 34 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 113 (354)
..++..+.+.|++++|..+++........+ ......++.+....|+++.|...++.+.+.. +.+...+..+...+...
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 345666777788888888888777764333 2234444455566788888888888877664 44566677777778888
Q ss_pred CChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CCh-hhhHHHHHHHHhCCChhHHHHHHHH
Q 038758 114 GRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDL-VSWNAMLAGYALGGFREEVTNLLDE 186 (354)
Q Consensus 114 g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~ 186 (354)
|++++|...+++. +.+...+..+...+...|++++|...++.+.. |+. ..+.. +..+.+.|++++|...++.
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~-~~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIAT-CLSFLNKSRLPEDHDLARA 202 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHcCCHHHHHHHHHH
Confidence 8888888888776 33455667777778888888888877765532 332 22322 2346777888888888877
Q ss_pred HHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc----------ccchhHH----HHHHhcccC---
Q 038758 187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST----------ACGFVIC----SCSVFNQLS--- 249 (354)
Q Consensus 187 m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~----a~~~~~~~~--- 249 (354)
+. .....++...+..+..++.+.|+.++|...++...+....... ..|++++ |...|++..
T Consensus 203 ~l--~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 203 LL--PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HH--hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 65 3332233344444556677778888888877777765433222 5566664 666666654
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCC-HhhHHHHHHHhhccCcccCc---------cccchh-HHHHH
Q 038758 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN-TVTIVSVLPACLKLAALPQG---------LGTGSF-VWNAL 318 (354)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~~---------~~~~~~-~~~~l 318 (354)
+.+...+..+...+.+.|++++|+..+++..+. .|+ ...+..+...+.+.|+++.+ ..|+.. .+..+
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~ 358 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYA 358 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 335668888899999999999999999998865 344 44566677888889998887 455543 34445
Q ss_pred HHHHHhcCChhHHHHHhhcCCC
Q 038758 319 IDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 319 i~~~~~~g~~~~A~~~~~~m~~ 340 (354)
..++...|++++|.+.|++..+
T Consensus 359 a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 6788999999999999998765
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.65 E-value=6.6e-15 Score=127.64 Aligned_cols=303 Identities=11% Similarity=0.130 Sum_probs=220.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCce-ehhhHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC-VKRPLLDLF 110 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~ 110 (354)
+|..+-..+...|++++|+..++.+.+.. +-.+..|..+..++...|+.+.|.+.|.+..+. .|+.. ..+.+-..+
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHH
Confidence 89999999999999999999999999864 235667888888888888888888888877765 33322 333444445
Q ss_pred HhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC----------------------------
Q 038758 111 IKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---------------------------- 158 (354)
Q Consensus 111 ~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---------------------------- 158 (354)
-..|++++|...+.+. +--...|+.|...+-..|+...|+..|++...
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHH
Confidence 5566666666666554 11233444444444444444444444444432
Q ss_pred --------C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhhc
Q 038758 159 --------K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHH 228 (354)
Q Consensus 159 --------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 228 (354)
| ....+..+...|-..|+.|.|++.|++.. .+.|+ ...|+.+..++-..|++.+|.+.+...+...
T Consensus 275 Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral----~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 275 YLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRAL----ELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHH----hcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 2 23344555555666788888888888776 34565 5679999999999999999999999988877
Q ss_pred ccccc----------ccchhHHHHHHhcccCC--C-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCH-hhHHHH
Q 038758 229 IHLST----------ACGFVICSCSVFNQLST--R-DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT-VTIVSV 294 (354)
Q Consensus 229 ~~~~~----------~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~l 294 (354)
..... ..|.+++|..+|..... | -...+|.|-..|-++|+.++|+..|++.. .+.|+. ..|+.+
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal--rI~P~fAda~~Nm 428 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL--RIKPTFADALSNM 428 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH--hcCchHHHHHHhc
Confidence 66544 77888899888887652 2 34678899999999999999999999988 557875 456666
Q ss_pred HHHhhccCcccCc---------cccc-hhHHHHHHHHHHhcCChhHHHHHhhcCCC--CCc
Q 038758 295 LPACLKLAALPQG---------LGTG-SFVWNALIDMYGRCGAIQKSRKIFVLMPH--KNL 343 (354)
Q Consensus 295 i~~~~~~~~~~~~---------~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~ 343 (354)
-..|-..|+.+.+ +.|. ....+-|...|-..|++.+|++-+++..+ ||.
T Consensus 429 Gnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF 489 (966)
T ss_pred chHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence 6677777777766 5554 46788899999999999999999999887 664
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.63 E-value=3.6e-13 Score=133.90 Aligned_cols=330 Identities=10% Similarity=0.021 Sum_probs=236.6
Q ss_pred hhhHHHHHHHHHhcccc-chhhhhhHhhhhh--hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhcc
Q 038758 2 ELGIQVHAHLIVCGVEL-CAFLGSQLLEVFC--NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL 78 (354)
Q Consensus 2 ~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~--~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 78 (354)
++|...++...+..-.. ....|..++.... .....-..+.+.|++++|...|++..+.. +.+...+..+...+...
T Consensus 320 ~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~ 398 (1157)
T PRK11447 320 ARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMAR 398 (1157)
T ss_pred HHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 35666666655543211 1123333433221 11222446778999999999999999874 33455677788899999
Q ss_pred CChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccc-------------cchhhHHHHHHHhcCc
Q 038758 79 KDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQD-------------FLVNNSLIDFYAKCRY 145 (354)
Q Consensus 79 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------------~~~~~~li~~~~~~~~ 145 (354)
|++++|.+.|+...+.. +.+...+..+...|. .++.++|..+++.+.+. ...+..+...+...|+
T Consensus 399 g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~ 476 (1157)
T PRK11447 399 KDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGK 476 (1157)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCC
Confidence 99999999999999764 445666777777775 46789999998877322 2234456778889999
Q ss_pred hhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC-cchHHHHHHHhhhhcCccccchhh
Q 038758 146 LKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN-TISLSGVLAACAQVKGVKLGKAIH 221 (354)
Q Consensus 146 ~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~ 221 (354)
+++|.+.|++..+ | +...+..+...|.+.|++++|...+++.. .. .|+ ...+......+...++.++|...+
T Consensus 477 ~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al--~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l 552 (1157)
T PRK11447 477 WAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLA--QQ--KPNDPEQVYAYGLYLSGSDRDRAALAHL 552 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--Hc--CCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999998864 4 45567778889999999999999999986 32 233 333333334456778888888877
Q ss_pred hHhhhhccccc--------------------cccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038758 222 GYVLRHHIHLS--------------------TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281 (354)
Q Consensus 222 ~~~~~~~~~~~--------------------~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (354)
+.+........ ...|+.++|..+++.- +.+...+..+...+.+.|+.++|++.|++..+
T Consensus 553 ~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~-p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~ 631 (1157)
T PRK11447 553 NTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ-PPSTRIDLTLADWAQQRGDYAAARAAYQRVLT 631 (1157)
T ss_pred HhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 76543221111 0678889999988843 44556777788899999999999999999987
Q ss_pred cCcCCCHhhHHHHHHHhhccCcccCc---------ccc-chhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 282 ANVKPNTVTIVSVLPACLKLAALPQG---------LGT-GSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 282 ~g~~p~~~t~~~li~~~~~~~~~~~~---------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
.. +.+...+..+...+...|+.+++ ..| +..++..+..++.+.|++++|.++++.+..
T Consensus 632 ~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 632 RE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 53 33567788888899999998887 333 456677788889999999999999998865
No 15
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=3.2e-13 Score=112.43 Aligned_cols=263 Identities=11% Similarity=0.113 Sum_probs=193.4
Q ss_pred ccccchhhhhhHhhhhh-------------------------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHH
Q 038758 15 GVELCAFLGSQLLEVFC-------------------------NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCP 69 (354)
Q Consensus 15 g~~~~~~~~~~li~~~~-------------------------~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 69 (354)
-..-+..+++.+|.++| +||.+|.+-.-... .+++.+|.+..+.||..|||
T Consensus 202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHH
Confidence 33457788888888888 78888776544332 78999999999999999999
Q ss_pred HHHHHHhccCChhh----HHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHH-HHHHHhh-------------ccccc
Q 038758 70 KVYKACSELKDYRV----GKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEIT-SGLFEEM-------------DQDFL 131 (354)
Q Consensus 70 ~ll~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~~-------------~~~~~ 131 (354)
++++...+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+. ..+..++ +.+..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 99999999997765 568999999999999999999999999999988553 3333333 33455
Q ss_pred hhhHHHHHHHhcCchhHHHHHhccCCC--------CC---hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcch
Q 038758 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQ--------KD---LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTIS 200 (354)
Q Consensus 132 ~~~~li~~~~~~~~~~~a~~~~~~~~~--------~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t 200 (354)
-|..-++.|.+..|.+-|.++..-... |+ ..-|..+....|+....+....+|+.|. -.-+-|+..+
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV--P~~y~p~~~~ 435 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV--PSAYFPHSQT 435 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cceecCCchh
Confidence 566778888899999988887655542 22 2336677788888889999999999998 7788899999
Q ss_pred HHHHHHHhhhhcCccccchhhhHhhhhcccccc-------------c-------cchhHH-----HHHHhccc-------
Q 038758 201 LSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-------------A-------CGFVIC-----SCSVFNQL------- 248 (354)
Q Consensus 201 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~-------~~~~~~-----a~~~~~~~------- 248 (354)
-..++++....|.++-..++|..+...|-.... + ...+.. |..+++..
T Consensus 436 m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~ 515 (625)
T KOG4422|consen 436 MIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQ 515 (625)
T ss_pred HHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999998888877733322 0 001110 11111111
Q ss_pred C--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038758 249 S--TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283 (354)
Q Consensus 249 ~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 283 (354)
. .......+.+.-.+.+.|+.++|.+++.-+.+.+
T Consensus 516 r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 516 RAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred HhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 1 1233445556666778888888888888775543
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.62 E-value=6.2e-13 Score=124.16 Aligned_cols=268 Identities=10% Similarity=-0.085 Sum_probs=203.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.+..+..+....|++++|...++++.+.. +.+...+..+...+...|+++.|.+.++...+.. +.+...+..+..++.
T Consensus 78 ~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~ 155 (656)
T PRK15174 78 LLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLV 155 (656)
T ss_pred HHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 44555566678999999999999998864 3345567778888899999999999999998764 556778888999999
Q ss_pred hcCChhHHHHHHHhh---cc-ccchhhHHHHHHHhcCchhHHHHHhccCCCC----ChhhhHHHHHHHHhCCChhHHHHH
Q 038758 112 KCGRMEITSGLFEEM---DQ-DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK----DLVSWNAMLAGYALGGFREEVTNL 183 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~---~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~ 183 (354)
..|++++|...++++ .| +...+..+ ..+.+.|++++|...++.+.+. +...+..+...+.+.|++++|...
T Consensus 156 ~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~ 234 (656)
T PRK15174 156 LMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQT 234 (656)
T ss_pred HCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999877 23 33333333 3478899999999999886542 233445556788899999999999
Q ss_pred HHHHHhhhcCCCCCcchHHHHHHHhhhhcCccc----cchhhhHhhhhcccccc----------ccchhHHHHHHhcccC
Q 038758 184 LDEMEMIQTDMQPNTISLSGVLAACAQVKGVKL----GKAIHGYVLRHHIHLST----------ACGFVICSCSVFNQLS 249 (354)
Q Consensus 184 ~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~ 249 (354)
++... ... +.+...+..+...+...|+.++ |...++...+....... ..|++++|...+++..
T Consensus 235 ~~~al--~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al 311 (656)
T PRK15174 235 GESAL--ARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSL 311 (656)
T ss_pred HHHHH--hcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99987 332 2345566777888889999885 78888888876544322 7889999999888765
Q ss_pred --CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhh-HHHHHHHhhccCcccCc
Q 038758 250 --TR-DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT-IVSVLPACLKLAALPQG 307 (354)
Q Consensus 250 --~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~li~~~~~~~~~~~~ 307 (354)
.| +...+..+...+.+.|++++|+..|+++.+. .|+... +..+..++...|+.+++
T Consensus 312 ~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA 371 (656)
T PRK15174 312 ATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEA 371 (656)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHH
Confidence 34 4456777888999999999999999999865 455543 33345677888888776
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.59 E-value=6.6e-13 Score=124.02 Aligned_cols=301 Identities=9% Similarity=-0.006 Sum_probs=173.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.+...-..+.+.|++++|...|++.... .|+...|..+..++...|++++|.+.++...+.. +.+...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 4455566667777777777777776653 4566667777777777777777777777776653 334556666667777
Q ss_pred hcCChhHHHHHHH-------------------------------------------------------------------
Q 038758 112 KCGRMEITSGLFE------------------------------------------------------------------- 124 (354)
Q Consensus 112 ~~g~~~~a~~~~~------------------------------------------------------------------- 124 (354)
..|++++|..-|.
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 7777766654332
Q ss_pred ---------------------------------hhc-------cccchhhHHHHHHHhcCchhHHHHHhccCCC--CC-h
Q 038758 125 ---------------------------------EMD-------QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KD-L 161 (354)
Q Consensus 125 ---------------------------------~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~ 161 (354)
+.- .....|..+...+...|++++|...|++..+ |+ .
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 210 0111233344444555666666666655443 22 3
Q ss_pred hhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc--------
Q 038758 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-------- 233 (354)
Q Consensus 162 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------- 233 (354)
..|..+...+...|++++|...|+... .. -+.+...|..+...+...|++++|...++...+.......
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al--~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~ 442 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKAL--KL-NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH--Hh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHH
Confidence 345555555666666666666666654 22 1122445555556666666666666666666554432211
Q ss_pred --ccchhHHHHHHhcccC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCH-hh-------HHHHHHHhhc
Q 038758 234 --ACGFVICSCSVFNQLS---TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT-VT-------IVSVLPACLK 300 (354)
Q Consensus 234 --~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t-------~~~li~~~~~ 300 (354)
+.|++++|+..|+... +.+...|+.+...+...|++++|++.|++..+.. |+. .+ ++.....+..
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CccccccccHHHHHHHHHHHHHH
Confidence 5566777777766543 2345566667777777777777777777766432 211 01 1111111222
Q ss_pred cCcccCc---------cccc-hhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 301 LAALPQG---------LGTG-SFVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 301 ~~~~~~~---------~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
.|+++++ ..|+ ...+..+...+.+.|++++|.+.|++..+
T Consensus 521 ~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3555444 3333 34567777778888888888877776644
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.59 E-value=1.8e-12 Score=129.03 Aligned_cols=298 Identities=10% Similarity=0.050 Sum_probs=205.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCC-cccHHH------------HHHHHhccCChhhHHHHHHHHHHhccCC
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPD-HFVCPK------------VYKACSELKDYRVGKDVYDYMISIKFEG 98 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~------------ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 98 (354)
.+..+-..+.+.|++++|...|++..+...... ...+.. ....+.+.|++++|.+.|++..+.. +.
T Consensus 305 a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~ 383 (1157)
T PRK11447 305 ALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NT 383 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 566666777777777777777777766532211 111111 1234556777777777777777653 34
Q ss_pred CceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCCCC------------hh
Q 038758 99 NACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD------------LV 162 (354)
Q Consensus 99 ~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------------~~ 162 (354)
+...+..+..++...|++++|++.|++. +.+...+..+...|. .++.++|...++.+.... ..
T Consensus 384 ~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~ 462 (1157)
T PRK11447 384 DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQND 462 (1157)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 4556666777777778888887777776 223344455555553 456677777776654311 12
Q ss_pred hhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhhcccccc--------
Q 038758 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-------- 233 (354)
Q Consensus 163 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------- 233 (354)
.+..+...+...|++++|.+.|++.. . ..|+ ...+..+...+.+.|++++|...++.+.+.......
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al--~--~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~ 538 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRL--A--LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLY 538 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH--H--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 24445667778999999999999987 3 3444 455667778899999999999999998875443222
Q ss_pred --ccchhHHHHHHhcccCCCC----c---------chHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHh
Q 038758 234 --ACGFVICSCSVFNQLSTRD----V---------VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298 (354)
Q Consensus 234 --~~~~~~~a~~~~~~~~~~~----~---------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 298 (354)
..++.++|...++.+.... . ..+..+...+...|+.++|..+++. .+++...+..+-..+
T Consensus 539 l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~ 613 (1157)
T PRK11447 539 LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWA 613 (1157)
T ss_pred HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHH
Confidence 5788889999998875321 1 1122345678889999999999872 234555667788888
Q ss_pred hccCcccCc---------ccc-chhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 299 LKLAALPQG---------LGT-GSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 299 ~~~~~~~~~---------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
.+.|+.+++ ..| +...+..+...|...|++++|.+.++...+
T Consensus 614 ~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 614 QQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 899998887 344 578899999999999999999999998876
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.58 E-value=4e-12 Score=121.15 Aligned_cols=302 Identities=8% Similarity=-0.033 Sum_probs=186.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.+..+...+...|++++|.+++++..+.. +.+...+..+...+...|++++|...++...+.. +.+.. +..+..++.
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~ 127 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYK 127 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHH
Confidence 35666677778888888888888877652 2234445666667778888888888888877663 44555 777777788
Q ss_pred hcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC-----------------------------
Q 038758 112 KCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ----------------------------- 158 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----------------------------- 158 (354)
..|+.++|...+++. +.+...+..+...+...+..++|.+.++....
T Consensus 128 ~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~ 207 (765)
T PRK10049 128 RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKE 207 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhH
Confidence 888888888888777 23334444555555555555555444443221
Q ss_pred ----------------------CChh-hhH----HHHHHHHhCCChhHHHHHHHHHHhhhcCCC-CCcchHHHHHHHhhh
Q 038758 159 ----------------------KDLV-SWN----AMLAGYALGGFREEVTNLLDEMEMIQTDMQ-PNTISLSGVLAACAQ 210 (354)
Q Consensus 159 ----------------------~~~~-~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-p~~~t~~~ll~~~~~ 210 (354)
|+.. .+. ..+.++...|++++|...|+.+. ..+.. |+. .-..+..++..
T Consensus 208 r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll--~~~~~~P~~-a~~~la~~yl~ 284 (765)
T PRK10049 208 RYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLK--AEGQIIPPW-AQRWVASAYLK 284 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh--ccCCCCCHH-HHHHHHHHHHh
Confidence 1111 010 01233456677778888888776 44321 322 11223556777
Q ss_pred hcCccccchhhhHhhhhcccc-c---c----------ccchhHHHHHHhcccCC--C-------------C---cchHHH
Q 038758 211 VKGVKLGKAIHGYVLRHHIHL-S---T----------ACGFVICSCSVFNQLST--R-------------D---VVVWNS 258 (354)
Q Consensus 211 ~~~~~~a~~~~~~~~~~~~~~-~---~----------~~~~~~~a~~~~~~~~~--~-------------~---~~~~~~ 258 (354)
.|++++|...++.+.+..... . . ..|++++|...++.+.. | + ...+..
T Consensus 285 ~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~ 364 (765)
T PRK10049 285 LHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSL 364 (765)
T ss_pred cCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHH
Confidence 788888888877776544221 0 0 55777777777776542 2 1 112344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc---------cccc-hhHHHHHHHHHHhcCCh
Q 038758 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LGTG-SFVWNALIDMYGRCGAI 328 (354)
Q Consensus 259 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~---------~~~~-~~~~~~li~~~~~~g~~ 328 (354)
+...+...|+.++|+++++++.... +-+...+..+...+...|+.+.+ ..|+ ...+......+.+.|++
T Consensus 365 ~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 365 LSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCH
Confidence 5566777788888888888776542 33345556666677777777665 4454 55666667777788888
Q ss_pred hHHHHHhhcCCC
Q 038758 329 QKSRKIFVLMPH 340 (354)
Q Consensus 329 ~~A~~~~~~m~~ 340 (354)
++|+++++++.+
T Consensus 444 ~~A~~~~~~ll~ 455 (765)
T PRK10049 444 RQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHHHH
Confidence 888888877765
No 20
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.55 E-value=6.8e-13 Score=119.54 Aligned_cols=249 Identities=14% Similarity=0.090 Sum_probs=189.7
Q ss_pred HHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHH
Q 038758 6 QVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGK 85 (354)
Q Consensus 6 ~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 85 (354)
.++..+...|+.|+.. ||..+|..||..|+.+.|- +|.-|.-+..+.+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRv----------tyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRV----------TYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK 79 (1088)
T ss_pred hHHHHHHHhcCCCchh----------hHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC
Confidence 4677889999999998 7778888889999999998 9999999888889999999999999999988887
Q ss_pred HHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh--------------------------ccccchhhHHHHH
Q 038758 86 DVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM--------------------------DQDFLVNNSLIDF 139 (354)
Q Consensus 86 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--------------------------~~~~~~~~~li~~ 139 (354)
.|-+.+|++|..+|...||+..-..+=+.| +.....-...+.-
T Consensus 80 -----------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~ill 148 (1088)
T KOG4318|consen 80 -----------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILL 148 (1088)
T ss_pred -----------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHH
Confidence 788899999999999999987633222223 1111111235555
Q ss_pred HHhcCchhHHHHHhccCCCC--ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCcccc
Q 038758 140 YAKCRYLKVSHCKFSKIKQK--DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLG 217 (354)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a 217 (354)
....|-++.+.+++..++.. +. ++-.+++-+.. .+....++....+. -.+ .|++.+|..++++-...|+.+.|
T Consensus 149 lv~eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~--~ntpvekLl~~cks-l~e-~~~s~~l~a~l~~alaag~~d~A 223 (1088)
T KOG4318|consen 149 LVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVV--DNTPVEKLLNMCKS-LVE-APTSETLHAVLKRALAAGDVDGA 223 (1088)
T ss_pred HHHHHHHHHHHHHHhhCCcccccc-hHHHHHHHhcc--CCchHHHHHHHHHH-hhc-CCChHHHHHHHHHHHhcCchhhH
Confidence 66667788888888777631 11 11112433332 34455666665542 233 79999999999999999999999
Q ss_pred chhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHH
Q 038758 218 KAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297 (354)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 297 (354)
..+...|.+.|+ +-+.+.|-.|+-+ .++...++.+.+-|.+.|+.|+..|+...+..
T Consensus 224 k~ll~emke~gf--------------------pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip 280 (1088)
T KOG4318|consen 224 KNLLYEMKEKGF--------------------PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIP 280 (1088)
T ss_pred HHHHHHHHHcCC--------------------Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHh
Confidence 999999999999 5566666666665 78888999999999999999999999988888
Q ss_pred hhccCcc
Q 038758 298 CLKLAAL 304 (354)
Q Consensus 298 ~~~~~~~ 304 (354)
+...|..
T Consensus 281 ~l~N~~t 287 (1088)
T KOG4318|consen 281 QLSNGQT 287 (1088)
T ss_pred hhcchhh
Confidence 8775543
No 21
>PF13041 PPR_2: PPR repeat family
Probab=99.54 E-value=2.1e-14 Score=86.24 Aligned_cols=50 Identities=28% Similarity=0.547 Sum_probs=47.9
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhc
Q 038758 251 RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300 (354)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 300 (354)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.+|.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999988875
No 22
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.51 E-value=3.3e-14 Score=119.62 Aligned_cols=250 Identities=16% Similarity=0.194 Sum_probs=100.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCcCCccc-HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCC
Q 038758 37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFV-CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR 115 (354)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 115 (354)
-..+.+.|++++|+++++.-.....+|+... |..+.......++++.|.+.++.+.+.+ +-++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 4567788999999999976555432344444 4445556667889999999999998876 4467778888888 79999
Q ss_pred hhHHHHHHHhh---ccccchhhHHHHHHHhcCchhHHHHHhccCC-----CCChhhhHHHHHHHHhCCChhHHHHHHHHH
Q 038758 116 MEITSGLFEEM---DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK-----QKDLVSWNAMLAGYALGGFREEVTNLLDEM 187 (354)
Q Consensus 116 ~~~a~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 187 (354)
+++|.+++++. .++...+...+..+.+.++++++.++++... .++...|..+...+.+.|++++|.+.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999888776 4556667778888899999999999887743 246667888888889999999999999988
Q ss_pred HhhhcCCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhc
Q 038758 188 EMIQTDMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266 (354)
Q Consensus 188 ~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 266 (354)
. ...|+ ......++..+...|+.+++..++....+.. +.|...|..+..++...
T Consensus 173 l----~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~---------------------~~~~~~~~~la~~~~~l 227 (280)
T PF13429_consen 173 L----ELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA---------------------PDDPDLWDALAAAYLQL 227 (280)
T ss_dssp H----HH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----------------------HTSCCHCHHHHHHHHHH
T ss_pred H----HcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC---------------------cCHHHHHHHHHHHhccc
Confidence 6 23454 5567778888888888888777777766654 34566788899999999
Q ss_pred CCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcC
Q 038758 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLM 338 (354)
Q Consensus 267 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 338 (354)
|+.++|+..|++..+. .|+..+ +...+.+++...|+.++|.++..+.
T Consensus 228 g~~~~Al~~~~~~~~~--~p~d~~-----------------------~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 228 GRYEEALEYLEKALKL--NPDDPL-----------------------WLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp T-HHHHHHHHHHHHHH--STT-HH-----------------------HHHHHHHHHT---------------
T ss_pred cccccccccccccccc--cccccc-----------------------ccccccccccccccccccccccccc
Confidence 9999999999998764 454333 3667788888888888888887654
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.50 E-value=4.9e-12 Score=118.22 Aligned_cols=227 Identities=12% Similarity=0.040 Sum_probs=148.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCC-cccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPD-HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLF 110 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 110 (354)
.|+.+-..+...|++++|...+++..+. .|+ ...|..+...+...|++++|...|+...+.. +.+..++..+...+
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLH 409 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4566666677778888888887777764 333 3356666667777778888888777776653 44566777777777
Q ss_pred HhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHH
Q 038758 111 IKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNL 183 (354)
Q Consensus 111 ~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~ 183 (354)
...|++++|...|++. +.+...+..+...+.+.|++++|+..|++..+ | +...|+.+...+...|++++|.+.
T Consensus 410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~ 489 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEK 489 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHH
Confidence 7778888888777776 33445566677777777888888777776543 3 355677777777777888888777
Q ss_pred HHHHHhhhcCCCCCcc----hHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHH
Q 038758 184 LDEMEMIQTDMQPNTI----SLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259 (354)
Q Consensus 184 ~~~m~~~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 259 (354)
|+.......+..+... .++..+..+...|++++|..+++...+.. +.+...+..+
T Consensus 490 ~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~---------------------p~~~~a~~~l 548 (615)
T TIGR00990 490 FDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID---------------------PECDIAVATM 548 (615)
T ss_pred HHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC---------------------CCcHHHHHHH
Confidence 7776511111111100 01111112223456666666655544432 2344578889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 038758 260 ISAFVRSGQVVDALDLLRDVIVA 282 (354)
Q Consensus 260 i~~~~~~g~~~~a~~~~~~m~~~ 282 (354)
...+.+.|++++|+..|++..+.
T Consensus 549 a~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 549 AQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999998754
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.50 E-value=1.6e-11 Score=117.16 Aligned_cols=305 Identities=10% Similarity=-0.005 Sum_probs=221.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcC
Q 038758 35 SMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG 114 (354)
Q Consensus 35 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 114 (354)
-.+......|+.++|++++.+..... +.+...+..+...+...|++++|.++++...+.. +.+...+..+..++...|
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 44667788999999999999998632 3445568889999999999999999999988764 556677888999999999
Q ss_pred ChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CC-hhhhHHHHHHHHhCCChhHHHHHHH--
Q 038758 115 RMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KD-LVSWNAMLAGYALGGFREEVTNLLD-- 185 (354)
Q Consensus 115 ~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~-- 185 (354)
++++|...+++. +.+.. +..+...+...|+.++|...+++..+ |+ ...+..+..++.+.+..++|++.++
T Consensus 98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 999999999998 44455 88888999999999999999998875 43 3344555666666666665554444
Q ss_pred --------------------------------------------HHHhhhcCCCCCcc-hHHH----HHHHhhhhcCccc
Q 038758 186 --------------------------------------------EMEMIQTDMQPNTI-SLSG----VLAACAQVKGVKL 216 (354)
Q Consensus 186 --------------------------------------------~m~~~~~~~~p~~~-t~~~----ll~~~~~~~~~~~ 216 (354)
.+.. .....|+.. .+.. .+.++...|+.++
T Consensus 177 ~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~-~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~e 255 (765)
T PRK10049 177 NLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEA-LWHDNPDATADYQRARIDRLGALLARDRYKD 255 (765)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHh-hcccCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 3321 001122221 1111 1334556788899
Q ss_pred cchhhhHhhhhcccccc-----------ccchhHHHHHHhcccCC--CC-----cchHHHHHHHHHhcCCHHHHHHHHHH
Q 038758 217 GKAIHGYVLRHHIHLST-----------ACGFVICSCSVFNQLST--RD-----VVVWNSIISAFVRSGQVVDALDLLRD 278 (354)
Q Consensus 217 a~~~~~~~~~~~~~~~~-----------~~~~~~~a~~~~~~~~~--~~-----~~~~~~li~~~~~~g~~~~a~~~~~~ 278 (354)
|...|+.+.+.+.+.+. ..|+.++|+..|+++.. |. ...+..+..++...|++++|..++++
T Consensus 256 A~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~ 335 (765)
T PRK10049 256 VISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAH 335 (765)
T ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 99999998887632111 78889999999888652 22 12355566678899999999999999
Q ss_pred HHHcC-----------cCCCH---hhHHHHHHHhhccCcccCc----------cccchhHHHHHHHHHHhcCChhHHHHH
Q 038758 279 VIVAN-----------VKPNT---VTIVSVLPACLKLAALPQG----------LGTGSFVWNALIDMYGRCGAIQKSRKI 334 (354)
Q Consensus 279 m~~~g-----------~~p~~---~t~~~li~~~~~~~~~~~~----------~~~~~~~~~~li~~~~~~g~~~~A~~~ 334 (354)
+.+.. -.|+. ..+..+...+...|+.++| .+-+...+..+...+...|++++|++.
T Consensus 336 ~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~ 415 (765)
T PRK10049 336 TINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENE 415 (765)
T ss_pred HhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 87642 11332 2344566677888888877 344677888999999999999999999
Q ss_pred hhcCCC--CCc
Q 038758 335 FVLMPH--KNL 343 (354)
Q Consensus 335 ~~~m~~--~~~ 343 (354)
+++..+ ||.
T Consensus 416 l~~al~l~Pd~ 426 (765)
T PRK10049 416 LKKAEVLEPRN 426 (765)
T ss_pred HHHHHhhCCCC
Confidence 998887 654
No 25
>PF13041 PPR_2: PPR repeat family
Probab=99.49 E-value=5.8e-14 Score=84.26 Aligned_cols=50 Identities=24% Similarity=0.541 Sum_probs=48.6
Q ss_pred CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhh
Q 038758 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210 (354)
Q Consensus 159 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~ 210 (354)
||+.+||++|.+|++.|++++|.++|++|+ +.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~--~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMK--KRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHH--HcCCCCCHHHHHHHHHHHcC
Confidence 799999999999999999999999999999 99999999999999999985
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.45 E-value=6e-11 Score=114.02 Aligned_cols=165 Identities=8% Similarity=-0.049 Sum_probs=117.5
Q ss_pred HHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc-------cc---chhH
Q 038758 170 GYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-------AC---GFVI 239 (354)
Q Consensus 170 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~---~~~~ 239 (354)
.+...|++++|...|+.+. .. .|+...+..+..++.+.|+.+.|...++...+....... .. |+++
T Consensus 518 al~~~Gr~eeAi~~~rka~--~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 518 QAYQVEDYATALAAWQKIS--LH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHCCCHHHHHHHHHHHh--cc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHH
Confidence 3346777777777777764 22 344444555556677778888888888777765432222 23 8888
Q ss_pred HHHHHhcccC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCH-hhHHHHHHHhhccCcccCc---------
Q 038758 240 CSCSVFNQLS--TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT-VTIVSVLPACLKLAALPQG--------- 307 (354)
Q Consensus 240 ~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~~--------- 307 (354)
+|...+++.. .|+...|..+...+.+.|+.++|+..+++..+. .|+. ..+..+-..+...|+.+++
T Consensus 594 eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 594 LALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888776 466777888888888888888888888888755 4544 4455566678888887776
Q ss_pred ccc-chhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 308 LGT-GSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 308 ~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
..| +...+..+..++.+.|++++|...+++..+
T Consensus 672 l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 672 GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344 567788888889999999999998888765
No 27
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.39 E-value=2.6e-10 Score=100.56 Aligned_cols=275 Identities=9% Similarity=0.034 Sum_probs=178.8
Q ss_pred hHHHHHHHHHh--cCChhHHHHHHHHHHhCCCcCCccc-HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehh--hH
Q 038758 32 NWTSMMGMYNV--LGYYEEIVNLFYLMIDKGVRPDHFV-CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR--PL 106 (354)
Q Consensus 32 ~y~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~l 106 (354)
.+..+..+... .|++++|.+.+....+.+ ++... |.....+..+.|+++.+.+.+..+.+. .|+..... ..
T Consensus 84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~ 159 (398)
T PRK10747 84 ARKQTEQALLKLAEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITR 159 (398)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHH
Confidence 34444444332 589999988877765542 12222 333344447888999999999888764 55554333 33
Q ss_pred HHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCCC---Ch--------hhhHHHHHHH
Q 038758 107 LDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK---DL--------VSWNAMLAGY 171 (354)
Q Consensus 107 i~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~--------~~~~~li~~~ 171 (354)
...+...|+++.|.+.++++ +.+......+...|.+.|++++|.+++..+.+. +. .+|..++...
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 56788889999999988887 445667788888999999999999888877642 11 1333444444
Q ss_pred HhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc-------ccchhHHHHHH
Q 038758 172 ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-------ACGFVICSCSV 244 (354)
Q Consensus 172 ~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~a~~~ 244 (354)
....+.+...++++... ...+.+......+..++...|+.++|..++....+....+.. ..++.+++.+.
T Consensus 240 ~~~~~~~~l~~~w~~lp---~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~ 316 (398)
T PRK10747 240 MADQGSEGLKRWWKNQS---RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKV 316 (398)
T ss_pred HHhcCHHHHHHHHHhCC---HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHH
Confidence 45555666677777663 233456667777888888889999998888877774432221 33444555544
Q ss_pred hcccC--CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHH
Q 038758 245 FNQLS--TR-DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDM 321 (354)
Q Consensus 245 ~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~ 321 (354)
.++.. .| |...+..+-..+.+.+++++|.+.|+...+. .|+..+ +..+...
T Consensus 317 ~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~------------------------~~~La~~ 370 (398)
T PRK10747 317 LRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYD------------------------YAWLADA 370 (398)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH------------------------HHHHHHH
Confidence 44433 22 3334555556666666666666666666643 455544 7788889
Q ss_pred HHhcCChhHHHHHhhcCC
Q 038758 322 YGRCGAIQKSRKIFVLMP 339 (354)
Q Consensus 322 ~~~~g~~~~A~~~~~~m~ 339 (354)
+.+.|+.++|.+++++-.
T Consensus 371 ~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 371 LDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 999999999999887653
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.38 E-value=2.2e-10 Score=108.10 Aligned_cols=297 Identities=9% Similarity=-0.019 Sum_probs=209.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCc--ccHHHHHHHHhccCChhhHHHHHHHHHHhccCCC-ceehhhH--
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH--FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN-ACVKRPL-- 106 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l-- 106 (354)
.|...| ...+.|+++.|++.|++..+. .|+. ..+ .++..+...|+.++|...++... .|+ ...+..+
T Consensus 37 ~y~~ai-i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llal 108 (822)
T PRK14574 37 QYDSLI-IRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASA 108 (822)
T ss_pred HHHHHH-HHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHH
Confidence 344443 456889999999999999876 4554 234 88888889999999999999887 332 3333333
Q ss_pred HHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CChhhhHHHHHHHHhCCChhHH
Q 038758 107 LDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSWNAMLAGYALGGFREEV 180 (354)
Q Consensus 107 i~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a 180 (354)
...|...|++++|.++|+++ +.+...+..++..+...++.++|++.++++.. |+...+-.++..+...++..+|
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHH
Confidence 56888889999999999999 44567777888999999999999999999986 4444443333333335666669
Q ss_pred HHHHHHHHhhhcCCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhhcccccc---------------------ccch-
Q 038758 181 TNLLDEMEMIQTDMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST---------------------ACGF- 237 (354)
Q Consensus 181 ~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------------~~~~- 237 (354)
++.++++. .. .|+ ...+..++.++.+.|-...|.++..+-...-.+.+. ...+
T Consensus 189 L~~~ekll--~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 189 LQASSEAV--RL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHHHH--Hh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 99999997 33 454 556677788888888887777766543321111110 1122
Q ss_pred --hHHHHHHhcccCC-----CCc-chH----HHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCccc
Q 038758 238 --VICSCSVFNQLST-----RDV-VVW----NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALP 305 (354)
Q Consensus 238 --~~~a~~~~~~~~~-----~~~-~~~----~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~ 305 (354)
.+.|+.-++.+.. |.. ..| --.+-++...|++.+|++.|+.|...|.+.-...-..+..+|...+.++
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 2334444444321 321 122 2345678899999999999999998886544457778889999999888
Q ss_pred Cc-------cc---------cchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 306 QG-------LG---------TGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 306 ~~-------~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
++ +. ++......|..+|...|++++|..+++++.+
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 87 11 1333357889999999999999999999987
No 29
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.37 E-value=5.8e-10 Score=98.88 Aligned_cols=62 Identities=10% Similarity=0.190 Sum_probs=47.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHH
Q 038758 254 VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRK 333 (354)
Q Consensus 254 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 333 (354)
....++-..+.+.|++++|.+.|+........|+... +..+...+.+.|+.++|.+
T Consensus 336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~------------------------~~~La~ll~~~g~~~~A~~ 391 (409)
T TIGR00540 336 CINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND------------------------LAMAADAFDQAGDKAEAAA 391 (409)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH------------------------HHHHHHHHHHcCCHHHHHH
Confidence 4555777888888999999998885444344677665 6688889999999999999
Q ss_pred HhhcCC
Q 038758 334 IFVLMP 339 (354)
Q Consensus 334 ~~~~m~ 339 (354)
++++-.
T Consensus 392 ~~~~~l 397 (409)
T TIGR00540 392 MRQDSL 397 (409)
T ss_pred HHHHHH
Confidence 998753
No 30
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.37 E-value=9.4e-11 Score=102.39 Aligned_cols=269 Identities=12% Similarity=0.118 Sum_probs=212.1
Q ss_pred cccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh---ccccchh-hHHHHHH
Q 038758 65 HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM---DQDFLVN-NSLIDFY 140 (354)
Q Consensus 65 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~-~~li~~~ 140 (354)
..+|..+...+-..|+++.|..+++.+.+.. +..+..|..+..++...|+.+.|.+.|.+. .|+.... +.+...+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence 4467778888888999999999999998875 556778999999999999999998888765 4443333 3455556
Q ss_pred HhcCchhHHHHHhccCCC--CC-hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC-cchHHHHHHHhhhhcCccc
Q 038758 141 AKCRYLKVSHCKFSKIKQ--KD-LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN-TISLSGVLAACAQVKGVKL 216 (354)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~ 216 (354)
...|++++|...+.+..+ |. ...|..|-..+-..|+...|++-|++.. .+.|+ ...|-.+-..|...+.++.
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv----kldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV----KLDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhh----cCCCcchHHHhhHHHHHHHHhcchH
Confidence 667888888888876653 43 4568888888999999999999999887 45565 4568888888888999999
Q ss_pred cchhhhHhhhhcccccc----------ccchhHHHHHHhcccC--CCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038758 217 GKAIHGYVLRHHIHLST----------ACGFVICSCSVFNQLS--TRD-VVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283 (354)
Q Consensus 217 a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 283 (354)
|...+............ ..|.++-|+..|++.. .|+ ...||.|..++-..|++.+|++.|.+....
T Consensus 271 Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l- 349 (966)
T KOG4626|consen 271 AVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL- 349 (966)
T ss_pred HHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-
Confidence 99888887766544433 8899999999999876 343 478999999999999999999999998854
Q ss_pred cCCCH-hhHHHHHHHhhccCcccCc---------cccc-hhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 284 VKPNT-VTIVSVLPACLKLAALPQG---------LGTG-SFVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 284 ~~p~~-~t~~~li~~~~~~~~~~~~---------~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
.|+. ...+.|-..+...|.++.+ +.|. ....+-|...|-+.|++++|...+++..+
T Consensus 350 -~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 350 -CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR 416 (966)
T ss_pred -CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh
Confidence 4543 4677888888899988887 3343 45677888888888888888888888776
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.34 E-value=1.6e-12 Score=109.40 Aligned_cols=220 Identities=15% Similarity=0.144 Sum_probs=107.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHh
Q 038758 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIK 112 (354)
Q Consensus 33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 112 (354)
|..+-......++++.|.+.++++...+.. +...+..++.. ...+++++|.++++...+. .++...+..++..+.+
T Consensus 47 ~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~ 122 (280)
T PF13429_consen 47 WRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYR 122 (280)
T ss_dssp ---------------------------------------------------------------------------H-HHH
T ss_pred cccccccccccccccccccccccccccccc-ccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHH
Confidence 344445566789999999999999987633 56667777777 7889999999999877654 3566778889999999
Q ss_pred cCChhHHHHHHHhh------ccccchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHH
Q 038758 113 CGRMEITSGLFEEM------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNL 183 (354)
Q Consensus 113 ~g~~~~a~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~ 183 (354)
.++++++.++++++ +.+...|..+...+.+.|+.++|++.+++..+ | |....+.++..+...|+.+++.++
T Consensus 123 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~ 202 (280)
T PF13429_consen 123 LGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREA 202 (280)
T ss_dssp TT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 99999999999997 34556778888999999999999999998874 5 466788899999999999999999
Q ss_pred HHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHH
Q 038758 184 LDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAF 263 (354)
Q Consensus 184 ~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 263 (354)
++... ... +.|...+..+..++...|+.++|...++...+.. +.|......+..++
T Consensus 203 l~~~~--~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~---------------------p~d~~~~~~~a~~l 258 (280)
T PF13429_consen 203 LKRLL--KAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN---------------------PDDPLWLLAYADAL 258 (280)
T ss_dssp HHHHH--HH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS---------------------TT-HHHHHHHHHHH
T ss_pred HHHHH--HHC-cCHHHHHHHHHHHhcccccccccccccccccccc---------------------cccccccccccccc
Confidence 99886 333 5666777888899999999999999999988765 45777788889999
Q ss_pred HhcCCHHHHHHHHHHHH
Q 038758 264 VRSGQVVDALDLLRDVI 280 (354)
Q Consensus 264 ~~~g~~~~a~~~~~~m~ 280 (354)
...|+.++|.++.++..
T Consensus 259 ~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 259 EQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T----------------
T ss_pred ccccccccccccccccc
Confidence 99999999999988764
No 32
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.31 E-value=4.6e-09 Score=99.29 Aligned_cols=297 Identities=8% Similarity=-0.046 Sum_probs=147.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChh
Q 038758 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRME 117 (354)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 117 (354)
..+...|++++|+++|+++.+.. +-+...+..+...+...++.++|.+.++.+.+. .|+...+..++..+...++..
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHH
Confidence 35556677777777777776653 222344555566666677777777777666654 344444433333333344444
Q ss_pred HHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC-----------------------------------
Q 038758 118 ITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ----------------------------------- 158 (354)
Q Consensus 118 ~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----------------------------------- 158 (354)
+|.+.++++ +.+...+..+..++.+.|-...|.++..+-+.
T Consensus 187 ~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 187 DALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 466666666 22333444444444444444444444332220
Q ss_pred ------------------CChh-hh----HHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCcc
Q 038758 159 ------------------KDLV-SW----NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215 (354)
Q Consensus 159 ------------------~~~~-~~----~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~ 215 (354)
|... .| --.+-++...|++.++.+.|+.++ ..+.+.-..+-..+..+|...+.++
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~--~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAME--AEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh--hcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 1100 01 112334555666666666666666 5554433445566666666666666
Q ss_pred ccchhhhHhhhhcccc-----cc-----------ccchhHHHHHHhcccCC--C-------------Cc---chHHHHHH
Q 038758 216 LGKAIHGYVLRHHIHL-----ST-----------ACGFVICSCSVFNQLST--R-------------DV---VVWNSIIS 261 (354)
Q Consensus 216 ~a~~~~~~~~~~~~~~-----~~-----------~~~~~~~a~~~~~~~~~--~-------------~~---~~~~~li~ 261 (354)
+|..++..+.+...+. +. ..+++++|..+++.+.. | |. ..+..++.
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 6666666665433110 00 44555555555554431 1 00 11222344
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc---------ccc-chhHHHHHHHHHHhcCChhHH
Q 038758 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LGT-GSFVWNALIDMYGRCGAIQKS 331 (354)
Q Consensus 262 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~---------~~~-~~~~~~~li~~~~~~g~~~~A 331 (354)
.+...|+..+|++.++++.... +-|......+-..+...|.+..+ ..| +..+......++...|++++|
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHH
Confidence 4555555555555555554321 22333444444444444444443 333 334445555555556666666
Q ss_pred HHHhhcCCC
Q 038758 332 RKIFVLMPH 340 (354)
Q Consensus 332 ~~~~~~m~~ 340 (354)
.++.+...+
T Consensus 504 ~~~~~~l~~ 512 (822)
T PRK14574 504 ELLTDDVIS 512 (822)
T ss_pred HHHHHHHHh
Confidence 555544443
No 33
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.31 E-value=9.6e-10 Score=91.35 Aligned_cols=267 Identities=9% Similarity=0.072 Sum_probs=199.3
Q ss_pred cCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHH
Q 038758 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGL 122 (354)
Q Consensus 43 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 122 (354)
.|++.+|..+..+-.+.+-.| ...|..-..+..+.|+.+.+.+++.+..+..-.++..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 489999999999988877444 3346666777788999999999999998874467777788888899999999999988
Q ss_pred HHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCCC-----------ChhhhHHHHHHHHhCCChhHHHHHHHHH
Q 038758 123 FEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK-----------DLVSWNAMLAGYALGGFREEVTNLLDEM 187 (354)
Q Consensus 123 ~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m 187 (354)
++++ +....+......+|.+.|++.+...+...+.+. -..+|+.++.-....+..+.-...|+..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 8887 567778888999999999999999999888752 2246777777777666676666677766
Q ss_pred HhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc-------ccchhHHHHHHhc---ccCCCCcchHH
Q 038758 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-------ACGFVICSCSVFN---QLSTRDVVVWN 257 (354)
Q Consensus 188 ~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~a~~~~~---~~~~~~~~~~~ 257 (354)
....+-++..-..++.-+.+.|+.+.|.++..+..+.+.++.. +.++.+.-++..+ +-.+.+...+.
T Consensus 256 ---pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~ 332 (400)
T COG3071 256 ---PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLS 332 (400)
T ss_pred ---cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHH
Confidence 3344555566667777788888888998888888887775543 2222222222222 22233456777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhc
Q 038758 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVL 337 (354)
Q Consensus 258 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 337 (354)
+|-..|.+++.+.+|...|+...+. +|+..+ |+.+.++|.+.|+..+|.++.++
T Consensus 333 tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~------------------------~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 333 TLGRLALKNKLWGKASEALEAALKL--RPSASD------------------------YAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhc--CCChhh------------------------HHHHHHHHHHcCChHHHHHHHHH
Confidence 7888888888888888888866543 566665 88899999999999999988876
Q ss_pred CC
Q 038758 338 MP 339 (354)
Q Consensus 338 m~ 339 (354)
-.
T Consensus 387 ~L 388 (400)
T COG3071 387 AL 388 (400)
T ss_pred HH
Confidence 54
No 34
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.30 E-value=2.8e-11 Score=109.36 Aligned_cols=259 Identities=12% Similarity=0.070 Sum_probs=167.7
Q ss_pred HHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhcccc
Q 038758 51 NLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDF 130 (354)
Q Consensus 51 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 130 (354)
.++..+...|+.|+..||..+|..|+..|+.+.|- +|..|.-...+.+...++.++.+....|+.+.+. .|..
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------ep~a 83 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------EPLA 83 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------CCch
Confidence 56778889999999999999999999999999998 9999998888889999999999999999999988 6888
Q ss_pred chhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhh
Q 038758 131 LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210 (354)
Q Consensus 131 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~ 210 (354)
.+|+.|..+|...||+..-+.+ ++ -...++..+...|--.....++..+.. ..+.-||..+-..+ ..-
T Consensus 84 Dtyt~Ll~ayr~hGDli~fe~v-eq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c-~p~~lpda~n~ill---lv~ 151 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLILFEVV-EQ-------DLESINQSFSDHGVGSPERWFLMKIHC-CPHSLPDAENAILL---LVL 151 (1088)
T ss_pred hHHHHHHHHHHhccchHHHHHH-HH-------HHHHHHhhhhhhccCcHHHHHHhhccc-CcccchhHHHHHHH---HHH
Confidence 8999999999999997652221 11 111222333333333333333333221 22333332221110 111
Q ss_pred hcCccccchhhhHh------------hhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 038758 211 VKGVKLGKAIHGYV------------LRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRD 278 (354)
Q Consensus 211 ~~~~~~a~~~~~~~------------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 278 (354)
.|-++.+.++...+ ++....+......+....+.+.. .|+..+|.++++.-...|+.+.|..++.+
T Consensus 152 eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e--~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 152 EGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE--APTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc--CCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 11111111111111 11111110011111111112222 58999999999999999999999999999
Q ss_pred HHHcCcCCCHhhHHHHHHHhh--------ccCcccCccccchhHHHHHHHHHHhcCChhH
Q 038758 279 VIVANVKPNTVTIVSVLPACL--------KLAALPQGLGTGSFVWNALIDMYGRCGAIQK 330 (354)
Q Consensus 279 m~~~g~~p~~~t~~~li~~~~--------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 330 (354)
|.+.|++.+..-|+.|+-+-. ..|.-+.|+.|+..|+.-.+..+..+|....
T Consensus 230 mke~gfpir~HyFwpLl~g~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~ 289 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLGINAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKY 289 (1088)
T ss_pred HHHcCCCcccccchhhhhcCccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhh
Confidence 999999999988888887621 1223344588998888887777777665443
No 35
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.29 E-value=8.9e-10 Score=106.13 Aligned_cols=224 Identities=10% Similarity=0.034 Sum_probs=129.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHh
Q 038758 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIK 112 (354)
Q Consensus 33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 112 (354)
|..+-..+.. +++++|...+.+.... .|+......+...+...|++++|...|+.+... +|+...+..+..++.+
T Consensus 480 ~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~ 554 (987)
T PRK09782 480 WNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQA 554 (987)
T ss_pred HHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHH
Confidence 3444444443 5666677766665544 344433333333445667777777777665432 3444445555666667
Q ss_pred cCChhHHHHHHHhhcc-ccchhh---HHHHHHHhcCchhHHHHHhccCCC--CChhhhHHHHHHHHhCCChhHHHHHHHH
Q 038758 113 CGRMEITSGLFEEMDQ-DFLVNN---SLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDE 186 (354)
Q Consensus 113 ~g~~~~a~~~~~~~~~-~~~~~~---~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~ 186 (354)
.|+.++|.+.+++... +....+ .+.....+.|++++|...+++..+ |+...|..+...+.+.|++++|...|+.
T Consensus 555 ~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~ 634 (987)
T PRK09782 555 AGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRA 634 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777777766511 111111 122222334777777777766653 5555666666667777777777777776
Q ss_pred HHhhhcCCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHh
Q 038758 187 MEMIQTDMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVR 265 (354)
Q Consensus 187 m~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 265 (354)
.. ...|+ ...+..+-.++...|+.++|...++...+.. +.+...+..+-.++..
T Consensus 635 AL----~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~---------------------P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 635 AL----ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL---------------------PDDPALIRQLAYVNQR 689 (987)
T ss_pred HH----HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHH
Confidence 65 22343 3344445556666667777766666665543 2345667777777777
Q ss_pred cCCHHHHHHHHHHHHHcCcCCCH
Q 038758 266 SGQVVDALDLLRDVIVANVKPNT 288 (354)
Q Consensus 266 ~g~~~~a~~~~~~m~~~g~~p~~ 288 (354)
.|++++|+..|++..+. .|+.
T Consensus 690 lGd~~eA~~~l~~Al~l--~P~~ 710 (987)
T PRK09782 690 LDDMAATQHYARLVIDD--IDNQ 710 (987)
T ss_pred CCCHHHHHHHHHHHHhc--CCCC
Confidence 78888888877777644 3543
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.28 E-value=2.5e-09 Score=97.29 Aligned_cols=298 Identities=12% Similarity=0.069 Sum_probs=216.6
Q ss_pred cCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHH
Q 038758 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGL 122 (354)
Q Consensus 43 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 122 (354)
.|++++|.+++.+..... +.+...|.+|...|-..|+.+++...+-..-..+ +-|...|..+-....+.|.++.|.-.
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence 399999999999998875 4566679999999999999998887765544333 55677888888889999999999999
Q ss_pred HHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCCCCh--------hhhHHHHHHHHhCCChhHHHHHHHHHHhh
Q 038758 123 FEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL--------VSWNAMLAGYALGGFREEVTNLLDEMEMI 190 (354)
Q Consensus 123 ~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 190 (354)
|.+. +++...+---...|-+.|+...|..-|.++-+.++ .+--..+..|...++-+.|.+.++....
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s- 308 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS- 308 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-
Confidence 9887 33444444556788889999999988887765322 1222345667777777888888887763
Q ss_pred hcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc-------------------------------------
Q 038758 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST------------------------------------- 233 (354)
Q Consensus 191 ~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------------------------------- 233 (354)
..+-..+...++++...+.+....+.+............+.+.
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 3445556677778888888777777777666655552222222
Q ss_pred --ccchhHHHHHHhcccC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc
Q 038758 234 --ACGFVICSCSVFNQLS----TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307 (354)
Q Consensus 234 --~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~ 307 (354)
+.+...+++..|-... .-+...|.-+..+|...|++.+|+.+|..+...-..-+...|..+-.+|-..|..+.|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 2233333333322221 2245677888899999999999999999998765445566788888888888988887
Q ss_pred ---------ccc-chhHHHHHHHHHHhcCChhHHHHHhhcCCCCCc
Q 038758 308 ---------LGT-GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343 (354)
Q Consensus 308 ---------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 343 (354)
..| +..+--+|-..+-+.|++++|.+.++.|..||.
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~ 514 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDG 514 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCc
Confidence 334 455666788889999999999999999988773
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.27 E-value=1.2e-09 Score=96.32 Aligned_cols=263 Identities=11% Similarity=0.048 Sum_probs=142.6
Q ss_pred hhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhc--cCCCceehhhHHHHHHhcCChh-HHHHH
Q 038758 46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIK--FEGNACVKRPLLDLFIKCGRME-ITSGL 122 (354)
Q Consensus 46 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~-~a~~~ 122 (354)
.++|...|.....+ +.-+......+..+|...+++++|+++|+.+.+.. ..-+..+|.+.+.-+-+.-... -|..+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 44566666664433 12222334445556666666666666666665442 1123445555544433322211 23333
Q ss_pred HHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCC---ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcc
Q 038758 123 FEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK---DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI 199 (354)
Q Consensus 123 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~ 199 (354)
.+..+.++.+|-++.++|.-.++.+.|++.|++..+. ..++|+.+-.-+....++|+|...|+... ..|..
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al------~~~~r 487 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL------GVDPR 487 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh------cCCch
Confidence 3444555556666666666666666666666555542 23445544445555555555555554443 23333
Q ss_pred hHHHH---HHHhhhhcCccccchhhhHhhhhcccccc----------ccchhHHHHHHhcccC---CCCcchHHHHHHHH
Q 038758 200 SLSGV---LAACAQVKGVKLGKAIHGYVLRHHIHLST----------ACGFVICSCSVFNQLS---TRDVVVWNSIISAF 263 (354)
Q Consensus 200 t~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~ 263 (354)
.|++. ...|.+.+.++.|+-.|+...+.+..... +.|+.++|+.+|++.. ..|...---....+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 44432 23355555555555555555544432222 4444444444444432 33444444445666
Q ss_pred HhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 264 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
...++.++|+..++++++. .|+..+ +|..+...|-+.|+.+.|..-|--+.+
T Consensus 568 ~~~~~~~eal~~LEeLk~~--vP~es~-----------------------v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKEL--VPQESS-----------------------VFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HhhcchHHHHHHHHHHHHh--CcchHH-----------------------HHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 6778888888888888743 676654 477788888889999999888877766
No 38
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.26 E-value=4.8e-10 Score=91.51 Aligned_cols=190 Identities=13% Similarity=0.051 Sum_probs=154.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 67778889999999999999999998764 3345667888888999999999999999998875 456667888899999
Q ss_pred hcCChhHHHHHHHhhc------cccchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHH
Q 038758 112 KCGRMEITSGLFEEMD------QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTN 182 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~ 182 (354)
..|++++|.+.+++.. .....+..+...+...|++++|...|++... | +...+..+...+...|++++|.+
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999982 2234566778889999999999999987764 3 45678888899999999999999
Q ss_pred HHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhh
Q 038758 183 LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR 226 (354)
Q Consensus 183 ~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 226 (354)
.+++.. .. .+.+...+......+...|+.+.+..+.+.+.+
T Consensus 191 ~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 191 YLERYQ--QT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHH--Hh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999997 43 334455666677777888888888887766544
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.22 E-value=2.7e-09 Score=94.23 Aligned_cols=236 Identities=9% Similarity=-0.014 Sum_probs=184.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCcCCcccHH--HHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcC
Q 038758 37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCP--KVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG 114 (354)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 114 (354)
..+..+.|+++.+.+.+.++.+. .|+..... .....+...|+++.|.+.++.+.+.. +-++.....+...|.+.|
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~g 201 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTG 201 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHH
Confidence 44557999999999999999874 56665444 33567889999999999999998876 667788999999999999
Q ss_pred ChhHHHHHHHhhccc----c--------chhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhH
Q 038758 115 RMEITSGLFEEMDQD----F--------LVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREE 179 (354)
Q Consensus 115 ~~~~a~~~~~~~~~~----~--------~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 179 (354)
++++|.+++..+... . .+|..++.......+.+...++++..+. .++.....+..++...|+.++
T Consensus 202 dw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~ 281 (398)
T PRK10747 202 AWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDT 281 (398)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHH
Confidence 999999999998311 1 2334445555556667788888888864 467778888999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc----------ccchhHHHHHHhcccC
Q 038758 180 VTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST----------ACGFVICSCSVFNQLS 249 (354)
Q Consensus 180 a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~ 249 (354)
|.+++++.. + ..|+.. -..+.+....++.+++.+..+...+...+... ..+++++|.+.|+...
T Consensus 282 A~~~L~~~l--~--~~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al 355 (398)
T PRK10747 282 AQQIILDGL--K--RQYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL 355 (398)
T ss_pred HHHHHHHHH--h--cCCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999998886 4 344442 12334444568888888888888877665544 8899999999999886
Q ss_pred --CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038758 250 --TRDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281 (354)
Q Consensus 250 --~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (354)
.|+...|..+...+.+.|+.++|.++|++-..
T Consensus 356 ~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 356 KQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 68888889999999999999999999998753
No 40
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.20 E-value=1.9e-09 Score=87.23 Aligned_cols=271 Identities=10% Similarity=0.048 Sum_probs=184.9
Q ss_pred hcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCC---ceehhhHHHHHHhcCChhH
Q 038758 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN---ACVKRPLLDLFIKCGRMEI 118 (354)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~ 118 (354)
-+++.++|.++|-+|.+.. +-+..+.-+|-+.|.+.|.++.|+++.+.+.+..--+. ......|..=|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3588999999999998753 33445566788888999999999999999886421111 2234456677888999999
Q ss_pred HHHHHHhhcc----ccchhhHHHHHHHhcCchhHHHHHhccCCCCChhh--------hHHHHHHHHhCCChhHHHHHHHH
Q 038758 119 TSGLFEEMDQ----DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVS--------WNAMLAGYALGGFREEVTNLLDE 186 (354)
Q Consensus 119 a~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~li~~~~~~~~~~~a~~~~~~ 186 (354)
|+.+|..+.. .......|+..|-...+|++|+++-+++...+..+ |.-+...+....+.+.|..++..
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999998832 33455678899999999999999888776544444 44444455556788888888887
Q ss_pred HHhhhcCCCCCcchHH-HHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHh
Q 038758 187 MEMIQTDMQPNTISLS-GVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVR 265 (354)
Q Consensus 187 m~~~~~~~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 265 (354)
.. . ..|+..--+ ++-+.....|+++.|.+.++.+.+.+. .--..+...|..+|.+
T Consensus 206 Al--q--a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~--------------------~yl~evl~~L~~~Y~~ 261 (389)
T COG2956 206 AL--Q--ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNP--------------------EYLSEVLEMLYECYAQ 261 (389)
T ss_pred HH--h--hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhCh--------------------HHHHHHHHHHHHHHHH
Confidence 76 2 233333333 334456778888888888888887765 2334567788999999
Q ss_pred cCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc---------cccchhHHHHHHHHHHhc---CChhHHHH
Q 038758 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LGTGSFVWNALIDMYGRC---GAIQKSRK 333 (354)
Q Consensus 266 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~---------~~~~~~~~~~li~~~~~~---g~~~~A~~ 333 (354)
.|+.++....+..+.+....++.. ..+-..-....-.+.| -+|+...+..||+.-... |...+...
T Consensus 262 lg~~~~~~~fL~~~~~~~~g~~~~--l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~ 339 (389)
T COG2956 262 LGKPAEGLNFLRRAMETNTGADAE--LMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLD 339 (389)
T ss_pred hCCHHHHHHHHHHHHHccCCccHH--HHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHH
Confidence 999999999999998764444332 1222111111111111 689999999999876543 34455555
Q ss_pred HhhcCC
Q 038758 334 IFVLMP 339 (354)
Q Consensus 334 ~~~~m~ 339 (354)
++.+|.
T Consensus 340 ~lr~mv 345 (389)
T COG2956 340 LLRDMV 345 (389)
T ss_pred HHHHHH
Confidence 566554
No 41
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.20 E-value=2.4e-09 Score=86.60 Aligned_cols=259 Identities=12% Similarity=0.100 Sum_probs=180.5
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh--cccc------chhhHHHHH
Q 038758 68 CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM--DQDF------LVNNSLIDF 139 (354)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--~~~~------~~~~~li~~ 139 (354)
|..=++.+ -.++.++|.+.|-+|.+.. +-+..+--+|.+.|...|..|.|+++-+.+ .||. ...-.|..=
T Consensus 39 Yv~GlNfL-Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 39 YVKGLNFL-LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHhHHHHH-hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 44434333 3468899999999999853 556667778999999999999999999988 2222 222346677
Q ss_pred HHhcCchhHHHHHhccCCCCC---hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcc----hHHHHHHHhhhhc
Q 038758 140 YAKCRYLKVSHCKFSKIKQKD---LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI----SLSGVLAACAQVK 212 (354)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~----t~~~ll~~~~~~~ 212 (354)
|...|-+|.|+.+|..+.+.+ ......|+..|-...+|++|.++-++.. +.+-.+... .|.-+...+....
T Consensus 117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~--k~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLV--KLGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HcCCccchhHHHHHHHHHHHHHhhhh
Confidence 889999999999999988633 3456678999999999999999999887 555554432 2333344444456
Q ss_pred CccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHH
Q 038758 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292 (354)
Q Consensus 213 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 292 (354)
+.+.|..++....+.. +..+..=-.+-+.+...|++++|.+.|+...+.+..--..+..
T Consensus 195 ~~d~A~~~l~kAlqa~---------------------~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~ 253 (389)
T COG2956 195 DVDRARELLKKALQAD---------------------KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLE 253 (389)
T ss_pred hHHHHHHHHHHHHhhC---------------------ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence 6777777776666654 2233333344567888999999999999999886555567788
Q ss_pred HHHHHhhccCcccCc---------cccchhHHHHHHHHHHhcCChhHHHHHh-hcCCC-CCcccHHHhhh
Q 038758 293 SVLPACLKLAALPQG---------LGTGSFVWNALIDMYGRCGAIQKSRKIF-VLMPH-KNLVSWNVMIS 351 (354)
Q Consensus 293 ~li~~~~~~~~~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~-~~~~~~~~li~ 351 (354)
.|..+|.+.|+.+++ ..+++..-..+-+.-....-.+.|...+ +.+.+ |+...+..+|.
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~ 323 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMD 323 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHH
Confidence 899999999998886 3444444445544443333344454444 44444 88777777664
No 42
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.19 E-value=1.5e-09 Score=88.57 Aligned_cols=193 Identities=13% Similarity=-0.013 Sum_probs=154.9
Q ss_pred CcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHH
Q 038758 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDF 139 (354)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~ 139 (354)
....+..+...+...|++++|.+.++...+.. +.+...+..+...+...|++++|.+.+++. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 34567778888999999999999999998764 455677888999999999999999999987 3445677788889
Q ss_pred HHhcCchhHHHHHhccCCC-----CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCc
Q 038758 140 YAKCRYLKVSHCKFSKIKQ-----KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGV 214 (354)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~ 214 (354)
+...|++++|.+.|++... .....+..+...+...|++++|.+.+++.. .. .+.+...+..+...+...|++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRAL--QI-DPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHH--Hh-CcCChHHHHHHHHHHHHcCCH
Confidence 9999999999999988754 123456677888899999999999999886 32 222355677788888889999
Q ss_pred cccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038758 215 KLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281 (354)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (354)
++|...++...+.. +.+...+..+...+...|+.++|..+++.+..
T Consensus 186 ~~A~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQTY---------------------NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999888777652 34556666778888899999999999888764
No 43
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.18 E-value=5.8e-09 Score=95.77 Aligned_cols=302 Identities=12% Similarity=0.087 Sum_probs=165.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCccc--HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFV--CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDL 109 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 109 (354)
+|-.+-++|-..|++++|...|.+..+. .|+.++ +.-|.+.+...|+++.+...|+...+.. +-+..+...|...
T Consensus 309 s~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 309 SFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhH
Confidence 3555556666666666666666555543 333332 3345566666666666666666666553 4445555555555
Q ss_pred HHhcC----ChhHHHHHHHhh----ccccchhhHHHHHHHhcCc------hhHHHHHhc-cCCCCChhhhHHHHHHHHhC
Q 038758 110 FIKCG----RMEITSGLFEEM----DQDFLVNNSLIDFYAKCRY------LKVSHCKFS-KIKQKDLVSWNAMLAGYALG 174 (354)
Q Consensus 110 ~~~~g----~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~------~~~a~~~~~-~~~~~~~~~~~~li~~~~~~ 174 (354)
|+..+ ..+.|..++.+. +.+...|-.+...|-...- +..|..++. .+.++.+...|.+.......
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~ 465 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRL 465 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHh
Confidence 55553 333333333333 2233333333333332222 122222221 12234555566666666677
Q ss_pred CChhHHHHHHHHHHhhhc---CCCCCcc-------hHHHHHHHhhhhcCccccchhhhHhhhhcccccc-----------
Q 038758 175 GFREEVTNLLDEMEMIQT---DMQPNTI-------SLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST----------- 233 (354)
Q Consensus 175 ~~~~~a~~~~~~m~~~~~---~~~p~~~-------t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------- 233 (354)
|.+++|...|.... .. ...++.. -|| +-...-..++.+.|..+|..+.+..+.--.
T Consensus 466 g~~~~A~~~f~~A~--~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~ 542 (1018)
T KOG2002|consen 466 GNIEKALEHFKSAL--GKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARD 542 (1018)
T ss_pred cChHHHHHHHHHHh--hhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHh
Confidence 77777777776665 22 1122221 111 112222334444455554444433221111
Q ss_pred --------------------------------------------------------------------------------
Q 038758 234 -------------------------------------------------------------------------------- 233 (354)
Q Consensus 234 -------------------------------------------------------------------------------- 233 (354)
T Consensus 543 k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e 622 (1018)
T KOG2002|consen 543 KNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE 622 (1018)
T ss_pred ccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH
Confidence
Q ss_pred -ccchhHHHHHHhcccC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc--
Q 038758 234 -ACGFVICSCSVFNQLS---TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-- 307 (354)
Q Consensus 234 -~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~-- 307 (354)
..+..+.|+.+|.++. +.|...-|-+-..++..|++.+|..+|.+..+... -+..+|..+-.+|...|.+..|
T Consensus 623 k~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIq 701 (1018)
T KOG2002|consen 623 KEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQ 701 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHH
Confidence 3345666777777554 34566667777777888888888888888877643 2334556666677777766665
Q ss_pred ----------cccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 308 ----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 308 ----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
-+-+..+...|.+++.++|.+.+|.+.+.....
T Consensus 702 mYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 702 MYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 233667778888888888888888887766554
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=8.6e-10 Score=97.21 Aligned_cols=240 Identities=9% Similarity=0.030 Sum_probs=162.4
Q ss_pred ChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh-------ccccchhhHHHHHHHhcCchh-HHHH
Q 038758 80 DYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-------DQDFLVNNSLIDFYAKCRYLK-VSHC 151 (354)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-------~~~~~~~~~li~~~~~~~~~~-~a~~ 151 (354)
+.++|...|+.+.+. +.-+..+...+..+|...+++++|+++|+.+ -.+...|++.+.-+-+.=... -|..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 567888999884443 3444567788999999999999999999999 346778888776655443322 2333
Q ss_pred HhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCC-CcchHHHHHHHhhhhcCccccchhhhHhhhhccc
Q 038758 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP-NTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH 230 (354)
Q Consensus 152 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 230 (354)
+.+.. ...+.+|.++-++|.-+++.+.|++.|+... -+.| ..++|+.+-.-+....+++.|...|+..+.....
T Consensus 413 Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAi----Qldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 413 LIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAI----QLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhh----ccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 33333 3467899999999999999999999999886 3556 5788998888889999999999999887754432
Q ss_pred ccc----------ccchhHHHHHHhcccC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHH
Q 038758 231 LST----------ACGFVICSCSVFNQLS---TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297 (354)
Q Consensus 231 ~~~----------~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 297 (354)
... +.++++.|.-.|++.. +.+.+....+...+.+.|+.++|++++++..... |.
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--~k---------- 555 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD--PK---------- 555 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--CC----------
Confidence 211 5555555555555443 2233334444444455555555555555554321 11
Q ss_pred hhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC--CCcccHHHhh
Q 038758 298 CLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH--KNLVSWNVMI 350 (354)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li 350 (354)
|+-.----+..+...+++++|.+.++++++ |+..+-..++
T Consensus 556 -------------n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~ll 597 (638)
T KOG1126|consen 556 -------------NPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALL 597 (638)
T ss_pred -------------CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHH
Confidence 222233456667788999999999999998 7765544443
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.1e-08 Score=86.63 Aligned_cols=277 Identities=10% Similarity=0.077 Sum_probs=179.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhcc--CCCceehhhHHHHHHhcCC
Q 038758 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKF--EGNACVKRPLLDLFIKCGR 115 (354)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~ 115 (354)
.++-...+.+++.+=.+...+.|.+-+...-+....+.....|+++|+.+|+++.+... .-|..+|..++-.--....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 34445566777777777777777554444333344445577788999999998887731 1245566655533332222
Q ss_pred hh-HHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCC---ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhh
Q 038758 116 ME-ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK---DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191 (354)
Q Consensus 116 ~~-~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 191 (354)
.. -|..++.-=+-...|.-++.+-|+-.++.++|...|++..+. ....|+.|..-|....+...|.+-|+...
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv--- 391 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV--- 391 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---
Confidence 21 122222222556667777778888888888888888877653 34457777777888888888888888775
Q ss_pred cCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHH
Q 038758 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271 (354)
Q Consensus 192 ~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 271 (354)
.-.+-|-..|-.+-++|.-.+..--|.-.|++..+.. +.|...|.+|-..|.+.++.++
T Consensus 392 di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k---------------------PnDsRlw~aLG~CY~kl~~~~e 450 (559)
T KOG1155|consen 392 DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK---------------------PNDSRLWVALGECYEKLNRLEE 450 (559)
T ss_pred hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC---------------------CCchHHHHHHHHHHHHhccHHH
Confidence 1223355667777777777777666666666665553 3477788888888888888888
Q ss_pred HHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc----------------ccc-chhHHHHHHHHHHhcCChhHHHHH
Q 038758 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------------LGT-GSFVWNALIDMYGRCGAIQKSRKI 334 (354)
Q Consensus 272 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~----------------~~~-~~~~~~~li~~~~~~g~~~~A~~~ 334 (354)
|++.|+.....| ..+...+..|-+.+-+.++.+++ ..| ....--.|..-+.+.+++++|...
T Consensus 451 AiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Y 529 (559)
T KOG1155|consen 451 AIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYY 529 (559)
T ss_pred HHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 888888877655 33556777777777777776665 222 223333466777788888887765
Q ss_pred hhcCC
Q 038758 335 FVLMP 339 (354)
Q Consensus 335 ~~~m~ 339 (354)
.....
T Consensus 530 a~~~~ 534 (559)
T KOG1155|consen 530 ATLVL 534 (559)
T ss_pred HHHHh
Confidence 44443
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.13 E-value=1.1e-08 Score=90.77 Aligned_cols=250 Identities=9% Similarity=0.001 Sum_probs=139.7
Q ss_pred ccCChhhHHHHHHHHHHhccCCCceeh-hhHHHHHHhcCChhHHHHHHHhh---ccccc--hhhHHHHHHHhcCchhHHH
Q 038758 77 ELKDYRVGKDVYDYMISIKFEGNACVK-RPLLDLFIKCGRMEITSGLFEEM---DQDFL--VNNSLIDFYAKCRYLKVSH 150 (354)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~---~~~~~--~~~~li~~~~~~~~~~~a~ 150 (354)
..|+++.|.+.+....+. .|+...+ -....+..+.|+.+.|.+.+.+. .|+.. ..-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 556777777777655443 3433222 23345556667777777777665 23332 2222456666677777777
Q ss_pred HHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHh---hhhcCccccchhhhHh
Q 038758 151 CKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC---AQVKGVKLGKAIHGYV 224 (354)
Q Consensus 151 ~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~---~~~~~~~~a~~~~~~~ 224 (354)
..++.+.+ | +......+...+.+.|++++|.+.+.... +.++.+.......-..+. ...+..+.+...+..+
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~--k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMA--KAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77776654 3 44566677777777888888888877776 554432222211111221 2233333333333333
Q ss_pred hhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHH-HHHHHhh--cc
Q 038758 225 LRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV-SVLPACL--KL 301 (354)
Q Consensus 225 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~-~li~~~~--~~ 301 (354)
.+...... +.+...+..+...+...|+.++|.+++++..+. .||..... .++..+. ..
T Consensus 252 ~~~~p~~~-----------------~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~ 312 (409)
T TIGR00540 252 WKNQPRHR-----------------RHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKP 312 (409)
T ss_pred HHHCCHHH-----------------hCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCC
Confidence 33322000 235566667777777777777777777777654 34433210 1222222 22
Q ss_pred CcccCc---------ccc-ch--hHHHHHHHHHHhcCChhHHHHHhh--cCC--CCCcccHHHh
Q 038758 302 AALPQG---------LGT-GS--FVWNALIDMYGRCGAIQKSRKIFV--LMP--HKNLVSWNVM 349 (354)
Q Consensus 302 ~~~~~~---------~~~-~~--~~~~~li~~~~~~g~~~~A~~~~~--~m~--~~~~~~~~~l 349 (354)
++.+.. ..| |+ ....++...+.+.|++++|.+.|+ ... .||...+..+
T Consensus 313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L 376 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA 376 (409)
T ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence 222221 233 33 557789999999999999999999 353 3887766554
No 47
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=3.2e-09 Score=89.79 Aligned_cols=309 Identities=11% Similarity=0.076 Sum_probs=163.8
Q ss_pred HHhcCChhHHHHHHHHHHhCCCcCCccc----HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCC
Q 038758 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFV----CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR 115 (354)
Q Consensus 40 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 115 (354)
+.+.+++.+|++.++-....-...+..+ .+.+--.+.+.|+++.|..-|+...+. .|+..+--.|+-++..-|+
T Consensus 247 ~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d 324 (840)
T KOG2003|consen 247 HFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGD 324 (840)
T ss_pred eeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCc
Confidence 3444567777777766555422222222 223333466888888888888888765 5776666667777777888
Q ss_pred hhHHHHHHHhh-------------ccccchhhHHHHHHHhcCc--------hhHHHHH-------hccCCCCCh------
Q 038758 116 MEITSGLFEEM-------------DQDFLVNNSLIDFYAKCRY--------LKVSHCK-------FSKIKQKDL------ 161 (354)
Q Consensus 116 ~~~a~~~~~~~-------------~~~~~~~~~li~~~~~~~~--------~~~a~~~-------~~~~~~~~~------ 161 (354)
-++..+.|.+| ++....-..|+.--.+... -..|++. ..-...||-
T Consensus 325 ~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dw 404 (840)
T KOG2003|consen 325 AEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDW 404 (840)
T ss_pred HHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHH
Confidence 88888888888 1111111122221111111 1111111 111111111
Q ss_pred -------hhhHH--------HHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHH-HHHHhh----------------
Q 038758 162 -------VSWNA--------MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSG-VLAACA---------------- 209 (354)
Q Consensus 162 -------~~~~~--------li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~-ll~~~~---------------- 209 (354)
..+.- -...+.+.|+++.|.++++-.. +..-+.-+..-+. ..--|.
T Consensus 405 cle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~--~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~a 482 (840)
T KOG2003|consen 405 CLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE--KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIA 482 (840)
T ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH--hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHH
Confidence 00111 1224677888888888877775 3222211111111 111111
Q ss_pred -------------------hhcCccccchhhhHhhhhcccccc----------ccchhHHHHHHhcccC---CCCcchHH
Q 038758 210 -------------------QVKGVKLGKAIHGYVLRHHIHLST----------ACGFVICSCSVFNQLS---TRDVVVWN 257 (354)
Q Consensus 210 -------------------~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~---~~~~~~~~ 257 (354)
..|++++|...+++.+........ ..|++++|+..|-++. ..+....-
T Consensus 483 ln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~ 562 (840)
T KOG2003|consen 483 LNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLV 562 (840)
T ss_pred hcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHH
Confidence 124455555555444433221111 5566666666665543 23444444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc----------cccchhHHHHHHHHHHhcCC
Q 038758 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------LGTGSFVWNALIDMYGRCGA 327 (354)
Q Consensus 258 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~----------~~~~~~~~~~li~~~~~~g~ 327 (354)
.+.+.|-...+...|++++-+... -++-|+....-|-..|-+.|+-.++ ++.++.+-..|...|....-
T Consensus 563 qianiye~led~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf 641 (840)
T KOG2003|consen 563 QIANIYELLEDPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQF 641 (840)
T ss_pred HHHHHHHHhhCHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHH
Confidence 455666666777777777765542 2334556677777888888887776 55566666666666666666
Q ss_pred hhHHHHHhhcCC--CCCcccHHHhhhhc
Q 038758 328 IQKSRKIFVLMP--HKNLVSWNVMISVY 353 (354)
Q Consensus 328 ~~~A~~~~~~m~--~~~~~~~~~li~~~ 353 (354)
+++|...|++.. +|+..-|..||..|
T Consensus 642 ~ekai~y~ekaaliqp~~~kwqlmiasc 669 (840)
T KOG2003|consen 642 SEKAINYFEKAALIQPNQSKWQLMIASC 669 (840)
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence 666666666443 36666666666544
No 48
>PRK12370 invasion protein regulator; Provisional
Probab=99.09 E-value=7.8e-09 Score=95.24 Aligned_cols=209 Identities=10% Similarity=-0.000 Sum_probs=132.3
Q ss_pred CChhHHHHHHHHHHhCCCcCCcc-cHHHHHHHHh---------ccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhc
Q 038758 44 GYYEEIVNLFYLMIDKGVRPDHF-VCPKVYKACS---------ELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKC 113 (354)
Q Consensus 44 ~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 113 (354)
+++++|.+.|++..+. .|+.. .|..+...+. ..+++++|...++...+.+ +-+...+..+..++...
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 4567888888888765 34433 3443333322 2344778888888887765 55666777777788888
Q ss_pred CChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CCh-hhhHHHHHHHHhCCChhHHHHHHHH
Q 038758 114 GRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDL-VSWNAMLAGYALGGFREEVTNLLDE 186 (354)
Q Consensus 114 g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~ 186 (354)
|++++|...|++. +.+...+..+...+...|++++|...+++..+ |+. ..+..+...+...|++++|...+++
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 8888888888876 33455677777788888888888888887754 332 2233344445667788888888877
Q ss_pred HHhhhcCCCCCc-chHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHh
Q 038758 187 MEMIQTDMQPNT-ISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVR 265 (354)
Q Consensus 187 m~~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 265 (354)
.. ... .|+. ..+..+..++...|+.++|...+..+.... ..+....+.+...|..
T Consensus 432 ~l--~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~---------------------~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 432 LR--SQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE---------------------ITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HH--Hhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc---------------------chhHHHHHHHHHHHhc
Confidence 75 322 3433 334555566667777777777766654332 1233344555555666
Q ss_pred cCCHHHHHHHHHHHHH
Q 038758 266 SGQVVDALDLLRDVIV 281 (354)
Q Consensus 266 ~g~~~~a~~~~~~m~~ 281 (354)
.| ++|...++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 488 NS--ERALPTIREFLE 501 (553)
T ss_pred cH--HHHHHHHHHHHH
Confidence 66 467776666654
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=99.07 E-value=1.8e-08 Score=92.86 Aligned_cols=212 Identities=9% Similarity=-0.036 Sum_probs=149.2
Q ss_pred hcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHH
Q 038758 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSG 121 (354)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 121 (354)
..+++++|...+++..+.+ +-+...+..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|..
T Consensus 316 ~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred cchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3456899999999998865 3355567777778889999999999999999875 5567788889999999999999999
Q ss_pred HHHhh---cccc-chhhHHHHHHHhcCchhHHHHHhccCCC---CC-hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcC
Q 038758 122 LFEEM---DQDF-LVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KD-LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193 (354)
Q Consensus 122 ~~~~~---~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 193 (354)
.+++. .|+. ..+..++..+...|++++|...+++... |+ ...+..+..++...|++++|...+..+. ..
T Consensus 394 ~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~--~~- 470 (553)
T PRK12370 394 TINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS--TQ- 470 (553)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh--hc-
Confidence 99997 3432 2334455567778999999999987642 43 4456777788889999999999998875 22
Q ss_pred CCCCcch-HHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHH
Q 038758 194 MQPNTIS-LSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272 (354)
Q Consensus 194 ~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 272 (354)
.|+..+ .+.+...+...|+ .+...++.+.+..-. .+....+.. ..+.-.|+-+.+
T Consensus 471 -~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~-------------------~~~~~~~~~--~~~~~~g~~~~~ 526 (553)
T PRK12370 471 -EITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQR-------------------IDNNPGLLP--LVLVAHGEAIAE 526 (553)
T ss_pred -cchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhH-------------------hhcCchHHH--HHHHHHhhhHHH
Confidence 344333 3444445666664 666666665543221 233333333 334455666666
Q ss_pred HHHHHHHHHcC
Q 038758 273 LDLLRDVIVAN 283 (354)
Q Consensus 273 ~~~~~~m~~~g 283 (354)
..+ +++.+.|
T Consensus 527 ~~~-~~~~~~~ 536 (553)
T PRK12370 527 KMW-NKFKNED 536 (553)
T ss_pred HHH-HHhhccc
Confidence 655 8887654
No 50
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.06 E-value=8.6e-09 Score=91.35 Aligned_cols=241 Identities=10% Similarity=0.046 Sum_probs=163.7
Q ss_pred ccHHHHHHHHhccCChhhHHHHHHHHHHh-----c-cCCCcee-hhhHHHHHHhcCChhHHHHHHHhh------------
Q 038758 66 FVCPKVYKACSELKDYRVGKDVYDYMISI-----K-FEGNACV-KRPLLDLFIKCGRMEITSGLFEEM------------ 126 (354)
Q Consensus 66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~------------ 126 (354)
.+...|...|...|+++.|..+++...+. | ..|...+ .+.+...|...+++++|..+|+++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555777788888888888888877654 1 1232222 234566777888888888888887
Q ss_pred ccccchhhHHHHHHHhcCchhHHHHHhccCCC----------CChh-hhHHHHHHHHhCCChhHHHHHHHHHHhh-hcCC
Q 038758 127 DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ----------KDLV-SWNAMLAGYALGGFREEVTNLLDEMEMI-QTDM 194 (354)
Q Consensus 127 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----------~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~ 194 (354)
+.-..+++.|..+|.+.|++++|...+++..+ |.+. .++.+...+...+++++|..++....+. ..-.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 23345666777788888888877776655432 2332 3666777888899999999998866421 1112
Q ss_pred CCC----cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHH
Q 038758 195 QPN----TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270 (354)
Q Consensus 195 ~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 270 (354)
.++ ..+++.+-..+...|++++|+.+++.+.+..-. ....-..-.....+-|-..|.+.++.+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~-------------~~~~~~~~~~~~l~~la~~~~~~k~~~ 426 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE-------------LLGKKDYGVGKPLNQLAEAYEELKKYE 426 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh-------------cccCcChhhhHHHHHHHHHHHHhcccc
Confidence 233 357888999999999999999999887764321 000000112345677788889999999
Q ss_pred HHHHHHHHHHHcC--cCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCC
Q 038758 271 DALDLLRDVIVAN--VKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339 (354)
Q Consensus 271 ~a~~~~~~m~~~g--~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (354)
+|.++|.+-..-. +.|+..+ ...+|..|...|.+.|++++|.++.+...
T Consensus 427 ~a~~l~~~~~~i~~~~g~~~~~--------------------~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 427 EAEQLFEEAKDIMKLCGPDHPD--------------------VTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHHHhCCCCCc--------------------hHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 9999998765321 2233322 23468899999999999999999988765
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.06 E-value=1.5e-07 Score=78.64 Aligned_cols=250 Identities=10% Similarity=0.043 Sum_probs=190.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|-.-.++--+.|+.+.+-..+.+.-+.--.++....-+..+.....|+++.|..-.+.+.+.+ +-++.+......+|.
T Consensus 120 ~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~ 198 (400)
T COG3071 120 AYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYI 198 (400)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHH
Confidence 4555667777889999999999999876335555566677778889999999999999999887 667888999999999
Q ss_pred hcCChhHHHHHHHhh------------ccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCC
Q 038758 112 KCGRMEITSGLFEEM------------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGF 176 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~ 176 (354)
+.|++..+..+...+ .-...+|..++.=....+..+.-...+++.+. .++..-..++.-+.+.|+
T Consensus 199 ~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~ 278 (400)
T COG3071 199 RLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGD 278 (400)
T ss_pred HhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCC
Confidence 999999999999999 22344666777777777777777778887774 456666677888889999
Q ss_pred hhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc----------ccchhHHHHHHhc
Q 038758 177 REEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST----------ACGFVICSCSVFN 246 (354)
Q Consensus 177 ~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~ 246 (354)
.++|.++.++.. +++..|+..+ +-.+.+-++...-.+..+.-.+...+.+. +.+.+.+|...|+
T Consensus 279 ~~~A~~~i~~~L--k~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~le 352 (400)
T COG3071 279 HDEAQEIIEDAL--KRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALE 352 (400)
T ss_pred hHHHHHHHHHHH--HhccChhHHH----HHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999998887 7777776221 12344555555555555544444333323 7788888888888
Q ss_pred ccC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCH
Q 038758 247 QLS--TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288 (354)
Q Consensus 247 ~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 288 (354)
... .|+..+|+.+-++|.+.|+..+|.+++++-...-.+|+.
T Consensus 353 aAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 353 AALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred HHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 654 789999999999999999999999999987754445543
No 52
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.03 E-value=3.7e-07 Score=83.61 Aligned_cols=319 Identities=10% Similarity=0.153 Sum_probs=222.1
Q ss_pred hhhHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCCh
Q 038758 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY 81 (354)
Q Consensus 2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 81 (354)
++|..|..++++.. |.... .|-+|-..|-..|+.+++...+--.--.. +-|...|..+-....+.|++
T Consensus 156 eeA~~i~~EvIkqd--p~~~~---------ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 156 EEAEEILMEVIKQD--PRNPI---------AYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHHHHHHHhC--ccchh---------hHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 45556666666543 22221 89999999999999999887764443332 44567799999999999999
Q ss_pred hhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccc-----hhhHHHHHHHhcCchhHHHHH
Q 038758 82 RVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFL-----VNNSLIDFYAKCRYLKVSHCK 152 (354)
Q Consensus 82 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~-----~~~~li~~~~~~~~~~~a~~~ 152 (354)
++|.-+|.+..+.. +++...+-.-+..|-+.|+...|.+-|.++ +|... .--..++.+...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999886 777666677788999999999999999998 21111 122356677777888888888
Q ss_pred hccCCC-----CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhh---------------------------cCCCCCcch
Q 038758 153 FSKIKQ-----KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ---------------------------TDMQPNTIS 200 (354)
Q Consensus 153 ~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------------------------~~~~p~~~t 200 (354)
++.... -+...+++++..|.+...++.+......+. . .++.++...
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~--~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDR--NRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHh--ccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 877654 345568888999999999999999888886 4 122222222
Q ss_pred HHHHHHHhhhhcCccccchhhhHhhhhcccccc-------------ccchhHHHHHHhcccCC----CCcchHHHHHHHH
Q 038758 201 LSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-------------ACGFVICSCSVFNQLST----RDVVVWNSIISAF 263 (354)
Q Consensus 201 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~ 263 (354)
+ -+.-++...+..+....+...+.+....+.. ..|++.+|+.+|..+.. .+...|--+-.+|
T Consensus 381 ~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 381 I-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred H-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 1 1222344555566666666666666544333 88899999999988762 2566888889999
Q ss_pred HhcCCHHHHHHHHHHHHHcCcCCCH-hhHHHHHHHhhccCcccCc-------------------cccchhHHHHHHHHHH
Q 038758 264 VRSGQVVDALDLLRDVIVANVKPNT-VTIVSVLPACLKLAALPQG-------------------LGTGSFVWNALIDMYG 323 (354)
Q Consensus 264 ~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~~-------------------~~~~~~~~~~li~~~~ 323 (354)
...|..++|.+.|+..... .|+. ..-.+|-..+-+.|+.+++ ..|+..+.....+.+.
T Consensus 460 ~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 9999999999999999854 4543 3344555566667766655 4444555556667777
Q ss_pred hcCChhHHHHHhhcC
Q 038758 324 RCGAIQKSRKIFVLM 338 (354)
Q Consensus 324 ~~g~~~~A~~~~~~m 338 (354)
..|+.++=..+-.+|
T Consensus 538 ~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 538 QVGKREEFINTASTL 552 (895)
T ss_pred HhhhHHHHHHHHHHH
Confidence 788777644444333
No 53
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.02 E-value=5.5e-07 Score=79.89 Aligned_cols=317 Identities=9% Similarity=0.000 Sum_probs=229.9
Q ss_pred cchhhhhhHhhhhh-----------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHH
Q 038758 18 LCAFLGSQLLEVFC-----------NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKD 86 (354)
Q Consensus 18 ~~~~~~~~li~~~~-----------~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 86 (354)
-++.|.-++|+... ||+.--..|.+.+.++-|..+|....+-- +-+...|......--..|..+....
T Consensus 493 gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 493 GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHH
Confidence 34555556665554 99999999999999999999999988753 3455567777777677888999999
Q ss_pred HHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CC
Q 038758 87 VYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KD 160 (354)
Q Consensus 87 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~ 160 (354)
+|+.....- +.....|-....-+-..||+..|..++.+. +.+...|-+-++.......++.|..+|.+... |+
T Consensus 572 llqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT 650 (913)
T KOG0495|consen 572 LLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT 650 (913)
T ss_pred HHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc
Confidence 999888752 444555666667777889999999988887 55677888888999999999999999988764 56
Q ss_pred hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc-------
Q 038758 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST------- 233 (354)
Q Consensus 161 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------- 233 (354)
...|.--+..---.+..++|.+++++.. ..++--...|..+-+.+-+.++.+.|...|..-.+.......
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~l---k~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLak 727 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEAL---KSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAK 727 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHH---HhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHH
Confidence 6666555555555688899999998875 233333556777777788888888888887665554433333
Q ss_pred ---ccchhHHHHHHhcccC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc
Q 038758 234 ---ACGFVICSCSVFNQLS---TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG 307 (354)
Q Consensus 234 ---~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~ 307 (354)
+.|.+..|..++++.. +.|...|-..|..=.+.|+.+.|..+..+..+. ++-+...|.--|....+.+.-...
T Consensus 728 leEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks 806 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKS 806 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHH
Confidence 7778888999998876 447788999999999999999999988777643 222333444444444433332221
Q ss_pred ------cccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 308 ------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 308 ------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
+..|+.+.-.+...|....++++|.+.|++..+
T Consensus 807 ~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 807 IDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK 845 (913)
T ss_pred HHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 555666677777777777777777777776665
No 54
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.01 E-value=1.5e-08 Score=89.81 Aligned_cols=234 Identities=14% Similarity=0.117 Sum_probs=171.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC-----C-CcCCccc-HHHHHHHHhccCChhhHHHHHHHHHHhc---cCC---
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-----G-VRPDHFV-CPKVYKACSELKDYRVGKDVYDYMISIK---FEG--- 98 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~--- 98 (354)
+...|-..|...|+++.|..++++..+. | ..|...+ .+.+-..|...+++++|..+|+.+...- .-+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 6666999999999999999999998664 2 1233333 3346667889999999999999998541 112
Q ss_pred -CceehhhHHHHHHhcCChhHHHHHHHhh-----------ccc-cchhhHHHHHHHhcCchhHHHHHhccCCC-------
Q 038758 99 -NACVKRPLLDLFIKCGRMEITSGLFEEM-----------DQD-FLVNNSLIDFYAKCRYLKVSHCKFSKIKQ------- 158 (354)
Q Consensus 99 -~~~~~~~li~~~~~~g~~~~a~~~~~~~-----------~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~------- 158 (354)
-..+++.|..+|.+.|++++|...+++. .+. ...++.+...++..+.+++|..+++...+
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2346777778899999999999998886 222 23446677788899999999988875532
Q ss_pred CC----hhhhHHHHHHHHhCCChhHHHHHHHHHHhhh----cCCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhhcc
Q 038758 159 KD----LVSWNAMLAGYALGGFREEVTNLLDEMEMIQ----TDMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHI 229 (354)
Q Consensus 159 ~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 229 (354)
++ ..+++.|-..|...|++++|.+++++..... .+..+. ...++.+-..|.+.+....+.++|........
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 2469999999999999999999999885211 112222 45678888889999999999888865443221
Q ss_pred ccccccchhHHHHHHhcccCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038758 230 HLSTACGFVICSCSVFNQLSTR-DVVVWNSIISAFVRSGQVVDALDLLRDVI 280 (354)
Q Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 280 (354)
.+..- .| ...+|..|...|...|++++|+++.+...
T Consensus 441 --------------~~g~~-~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 --------------LCGPD-HPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred --------------HhCCC-CCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 00000 22 34689999999999999999999988775
No 55
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.6e-07 Score=78.62 Aligned_cols=265 Identities=5% Similarity=0.018 Sum_probs=196.1
Q ss_pred HHhcCChhHHHHHHHHHHhCCC--cCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChh
Q 038758 40 YNVLGYYEEIVNLFYLMIDKGV--RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRME 117 (354)
Q Consensus 40 ~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 117 (354)
.-.+.++++|..+|++..+.++ --|..+|+.++-.-....++ .++.+-.-.--+-.+.|...+.+-|+-.++.+
T Consensus 272 ~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL----s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHE 347 (559)
T KOG1155|consen 272 SYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL----SYLAQNVSNIDKYRPETCCIIANYYSLRSEHE 347 (559)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH----HHHHHHHHHhccCCccceeeehhHHHHHHhHH
Confidence 4456899999999999998742 13667788877544332222 22222221112556778888999999999999
Q ss_pred HHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhh
Q 038758 118 ITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190 (354)
Q Consensus 118 ~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 190 (354)
+|...|++. +.....|+.+.+-|....+...|.+-++...+ .|-..|-.|..+|.-.+.+.-|+-.|++..
T Consensus 348 KAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~-- 425 (559)
T KOG1155|consen 348 KAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL-- 425 (559)
T ss_pred HHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH--
Confidence 999999987 55678899999999999999999999988765 467788899999999999999999999885
Q ss_pred hcCCCC-CcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCH
Q 038758 191 QTDMQP-NTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269 (354)
Q Consensus 191 ~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~ 269 (354)
.++| |...+.++-++|.+.++.++|.+.|......| ..+...+..|...|-+.++.
T Consensus 426 --~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~---------------------dte~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 426 --ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG---------------------DTEGSALVRLAKLYEELKDL 482 (559)
T ss_pred --hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc---------------------ccchHHHHHHHHHHHHHHhH
Confidence 3445 57889999999999999999999998888776 34668899999999999999
Q ss_pred HHHHHHHHHHHHc----CcCCC--HhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 270 VDALDLLRDVIVA----NVKPN--TVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 270 ~~a~~~~~~m~~~----g~~p~--~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
.+|-..|++-.+. |..-+ .....-|..-+-+.++++++ ..|.+.. +.-.-..++|..++.++++
T Consensus 483 ~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~A-----s~Ya~~~--~~~~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 483 NEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEA-----SYYATLV--LKGETECEEAKALLREIRK 552 (559)
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHH-----HHHHHHH--hcCCchHHHHHHHHHHHHH
Confidence 9999998887652 33222 12222344455566665543 1232322 2225567788888887765
No 56
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=4.8e-08 Score=82.81 Aligned_cols=262 Identities=12% Similarity=0.105 Sum_probs=165.7
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCcCCcccHHH--HHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCCh
Q 038758 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPK--VYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM 116 (354)
Q Consensus 39 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~--ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 116 (354)
-+.++|+++.|.++++-+.+.+-+.-...-+. .+..+...+++..|.++-+..+... .-+....+.--..-...|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 47789999999999999887653333322232 2333333457778877777665433 33333333333444567999
Q ss_pred hHHHHHHHhhcc-ccchhhHHH---HHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHh
Q 038758 117 EITSGLFEEMDQ-DFLVNNSLI---DFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189 (354)
Q Consensus 117 ~~a~~~~~~~~~-~~~~~~~li---~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 189 (354)
++|.+.+.+.-. +...-.+|. -.+-..|++++|+..|-++.. .+....-.+.+.|-...++..|.+++.+.
T Consensus 507 dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~-- 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA-- 584 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh--
Confidence 999999998733 333333333 356778999999999977653 56777778888898899999999999766
Q ss_pred hhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCH
Q 038758 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269 (354)
Q Consensus 190 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~ 269 (354)
..-++-|....+.+...|-+.|+-.+|.+.+-.-.+.- +-|+.+...|-..|....-+
T Consensus 585 -~slip~dp~ilskl~dlydqegdksqafq~~ydsyryf---------------------p~nie~iewl~ayyidtqf~ 642 (840)
T KOG2003|consen 585 -NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYF---------------------PCNIETIEWLAAYYIDTQFS 642 (840)
T ss_pred -cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccccc---------------------CcchHHHHHHHHHHHhhHHH
Confidence 33445557778888888999999888887764433221 23444444455555555555
Q ss_pred HHHHHHHHHHHHcCcCCCHhhHHHHHHHhh-ccCcccCc----------cccchhHHHHHHHHHHhcCC
Q 038758 270 VDALDLLRDVIVANVKPNTVTIVSVLPACL-KLAALPQG----------LGTGSFVWNALIDMYGRCGA 327 (354)
Q Consensus 270 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~-~~~~~~~~----------~~~~~~~~~~li~~~~~~g~ 327 (354)
++++..|++.. =++|+..-|..++.+|. +.|++..+ ++-|......|++.+...|-
T Consensus 643 ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 643 EKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 66666665543 23555555554444332 23333333 34455556777777776664
No 57
>PF12854 PPR_1: PPR repeat
Probab=98.93 E-value=1.4e-09 Score=58.63 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=29.1
Q ss_pred cccchhHHHHHHHHHHhcCChhHHHHHhhcCC
Q 038758 308 LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339 (354)
Q Consensus 308 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (354)
+.||..+|++||++||+.|++++|.++|++|+
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 56777779999999999999999999999995
No 58
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.91 E-value=1.6e-07 Score=79.42 Aligned_cols=229 Identities=7% Similarity=-0.033 Sum_probs=154.1
Q ss_pred HHhcCChhHHHHHHHHHHhCC-CcCC--cccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCCh
Q 038758 40 YNVLGYYEEIVNLFYLMIDKG-VRPD--HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM 116 (354)
Q Consensus 40 ~~~~~~~~~a~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 116 (354)
....+..+.++.-+.++.... ..|+ ...|..+...+...|+.+.|...|+...+.. +.+...|+.+...+...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCH
Confidence 334466677888888887643 2222 3447777778889999999999999998875 55678999999999999999
Q ss_pred hHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CChhhhHHHHHHHHhCCChhHHHHHHHHHHhh
Q 038758 117 EITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190 (354)
Q Consensus 117 ~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 190 (354)
++|.+.|++. +.+...|..+...+...|++++|.+.|++..+ |+..............+++++|.+.|.+..
T Consensus 115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~-- 192 (296)
T PRK11189 115 DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRY-- 192 (296)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHH--
Confidence 9999999988 33466778888889999999999999988764 433222222333445678999999997653
Q ss_pred hcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHH
Q 038758 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270 (354)
Q Consensus 191 ~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 270 (354)
. ...|+...+. ......|+...+ ..+..+.+.... +.++ .+.....|..+...+.+.|+.+
T Consensus 193 ~-~~~~~~~~~~---~~~~~lg~~~~~-~~~~~~~~~~~~----------~~~l----~~~~~ea~~~Lg~~~~~~g~~~ 253 (296)
T PRK11189 193 E-KLDKEQWGWN---IVEFYLGKISEE-TLMERLKAGATD----------NTEL----AERLCETYFYLAKYYLSLGDLD 253 (296)
T ss_pred h-hCCccccHHH---HHHHHccCCCHH-HHHHHHHhcCCC----------cHHH----HHHHHHHHHHHHHHHHHCCCHH
Confidence 2 2233332221 122234554443 233333321100 0000 0123457888999999999999
Q ss_pred HHHHHHHHHHHcCcCCCHhhH
Q 038758 271 DALDLLRDVIVANVKPNTVTI 291 (354)
Q Consensus 271 ~a~~~~~~m~~~g~~p~~~t~ 291 (354)
+|+..|++..+.+ +||..-+
T Consensus 254 ~A~~~~~~Al~~~-~~~~~e~ 273 (296)
T PRK11189 254 EAAALFKLALANN-VYNFVEH 273 (296)
T ss_pred HHHHHHHHHHHhC-CchHHHH
Confidence 9999999998664 3455443
No 59
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.88 E-value=8.5e-07 Score=79.72 Aligned_cols=259 Identities=13% Similarity=0.068 Sum_probs=143.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhc----
Q 038758 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKC---- 113 (354)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---- 113 (354)
..+...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.+ +.|..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccc
Confidence 3456788899998888774433 33333445566677788889999999999888876 55665666666666333
Q ss_pred -CChhHHHHHHHhh------------------------------------ccccchhhHHHHHHHhcCchhHHHHHhccC
Q 038758 114 -GRMEITSGLFEEM------------------------------------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKI 156 (354)
Q Consensus 114 -g~~~~a~~~~~~~------------------------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 156 (354)
.+.+...++++++ +.-+.+|+.|-..|......+-..+++...
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 2566677777777 111223333333333222222222222221
Q ss_pred C------------------CCCh--hhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC-cchHHHHHHHhhhhcCcc
Q 038758 157 K------------------QKDL--VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN-TISLSGVLAACAQVKGVK 215 (354)
Q Consensus 157 ~------------------~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~~~~ 215 (354)
. .|+. .++..+...|-..|++++|++++++.. . ..|+ ...|..-.+.+-..|+++
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI--~--htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI--E--HTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH--h--cCCCcHHHHHHHHHHHHHCCCHH
Confidence 1 0111 122333444555555555555555544 1 1233 233444444445555555
Q ss_pred ccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHH
Q 038758 216 LGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295 (354)
Q Consensus 216 ~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 295 (354)
+|....+...+.. ..|-..=+-....+.+.|++++|.+++....+.+..|-... .-+
T Consensus 246 ~Aa~~~~~Ar~LD---------------------~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L--~~m 302 (517)
T PF12569_consen 246 EAAEAMDEARELD---------------------LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNL--NDM 302 (517)
T ss_pred HHHHHHHHHHhCC---------------------hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCH--HHH
Confidence 5555544444433 23455555667778888999999988888876665332211 111
Q ss_pred HHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCC
Q 038758 296 PACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339 (354)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (354)
++. .......++|.+.|++..|.+-|..+.
T Consensus 303 Qc~--------------Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 303 QCM--------------WFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHH--------------HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 111 112445678888998888887666554
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=5e-08 Score=79.34 Aligned_cols=227 Identities=12% Similarity=0.029 Sum_probs=164.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhc
Q 038758 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKC 113 (354)
Q Consensus 34 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 113 (354)
+.+-+.|.+.|.+.+|...|+...+. .|-+.||..|-++|.+..+...|..++.+-.+. ++-++....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56777888999999999999988775 677788999999999999999999999887754 244554556677888888
Q ss_pred CChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHH
Q 038758 114 GRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDE 186 (354)
Q Consensus 114 g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ 186 (354)
++.++|.++++.. +.++.....+...|.-.++.|-|+..++++.+ .+...|+.+--+|.-.+++|-++.-|+.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 9999999998887 34555666666777777888888888877665 4667788887777778888888777777
Q ss_pred HHhhhcCCCCCc--chHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHH
Q 038758 187 MEMIQTDMQPNT--ISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV 264 (354)
Q Consensus 187 m~~~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~ 264 (354)
.. ..--.|+. ..|-.+-......||+..|.+.|+..+..+ ..+...+|.|--.-.
T Consensus 384 Al--stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d---------------------~~h~ealnNLavL~~ 440 (478)
T KOG1129|consen 384 AL--STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD---------------------AQHGEALNNLAVLAA 440 (478)
T ss_pred HH--hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC---------------------cchHHHHHhHHHHHh
Confidence 65 33333332 223333344445556666665555555443 234577888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCcCCCH
Q 038758 265 RSGQVVDALDLLRDVIVANVKPNT 288 (354)
Q Consensus 265 ~~g~~~~a~~~~~~m~~~g~~p~~ 288 (354)
+.|++++|..++....+. .|+.
T Consensus 441 r~G~i~~Arsll~~A~s~--~P~m 462 (478)
T KOG1129|consen 441 RSGDILGARSLLNAAKSV--MPDM 462 (478)
T ss_pred hcCchHHHHHHHHHhhhh--Cccc
Confidence 999999999999988743 4543
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=5.5e-07 Score=78.51 Aligned_cols=257 Identities=9% Similarity=-0.000 Sum_probs=154.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCCh
Q 038758 37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM 116 (354)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 116 (354)
..-+...+++.+..++.+...+.. ++....+..=|..+...|+..+-.-+=..|++.- |-.+.+|-++..-|.-.|..
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCc
Confidence 344556788888888888888764 5666667777777778888777666666666653 66677888888888888999
Q ss_pred hHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHh
Q 038758 117 EITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNLLDEMEM 189 (354)
Q Consensus 117 ~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 189 (354)
++|.+.|.+. +.=...|-...+.|+-.|..|+|+..+...-+ | ....+--+---|.+.+..+.|.+.|.+..
T Consensus 329 seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~- 407 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL- 407 (611)
T ss_pred HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHH-
Confidence 9999988886 22244555666666666666666655533221 1 11111122333445555555555555543
Q ss_pred hhcCCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhhcccccc-----------------ccchhHHHHHHhcccC--
Q 038758 190 IQTDMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-----------------ACGFVICSCSVFNQLS-- 249 (354)
Q Consensus 190 ~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------------~~~~~~~a~~~~~~~~-- 249 (354)
++-|+ +..++-+--.....+.+.+|...|+..+..-..... +++.+++|+..++...
T Consensus 408 ---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 408 ---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred ---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 33333 233333333333444555555555444311000000 4444444444444332
Q ss_pred -CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhcc
Q 038758 250 -TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301 (354)
Q Consensus 250 -~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 301 (354)
+.|..+|.++--.|...|+++.|.+.|.+.. .+.|+..+-..++..+...
T Consensus 485 ~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 485 SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIED 535 (611)
T ss_pred CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHHh
Confidence 5577888888888888888888888888776 5678877766666655544
No 62
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.85 E-value=1.6e-06 Score=74.29 Aligned_cols=295 Identities=12% Similarity=0.144 Sum_probs=163.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCCh
Q 038758 37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM 116 (354)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 116 (354)
+..=-..|+...|.++|++..+- .|+...|.+.|..=.+...++.|..+|+..+- +.|++.+|-.....=.++|.+
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~ 223 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNV 223 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcH
Confidence 33334457777777777777653 67777788887777777777788888777764 357777777777777777877
Q ss_pred hHHHHHHHhh-------ccccchhhHHHHHHHhcCchhHHHHHhc----cCCC---------------------------
Q 038758 117 EITSGLFEEM-------DQDFLVNNSLIDFYAKCRYLKVSHCKFS----KIKQ--------------------------- 158 (354)
Q Consensus 117 ~~a~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~----~~~~--------------------------- 158 (354)
..+..+|+.. ......+.+....-.++..++.|.-+|+ .+++
T Consensus 224 ~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 224 ALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 7777777765 2233344444455555666676666653 2221
Q ss_pred -------------CChh---hhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCc-------chHHHHHHHh---hhhc
Q 038758 159 -------------KDLV---SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT-------ISLSGVLAAC---AQVK 212 (354)
Q Consensus 159 -------------~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~-------~t~~~ll~~~---~~~~ 212 (354)
.|+. +|--.+..--..|+.+...++|+.. -.+++|-. +.|--+=-+| ....
T Consensus 304 v~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErA---Ianvpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 304 VGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERA---IANVPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred hhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHH---HccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0111 2222233333345555556666555 33444422 1111111111 1234
Q ss_pred CccccchhhhHhhhhcccccc---------------ccchhHHHHHHhcccC--CCCcchHHHHHHHHHhcCCHHHHHHH
Q 038758 213 GVKLGKAIHGYVLRHHIHLST---------------ACGFVICSCSVFNQLS--TRDVVVWNSIISAFVRSGQVVDALDL 275 (354)
Q Consensus 213 ~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~ 275 (354)
|++.++++++..++. ++... ++.++..|.+++.... .|-.-+|-..|..=.+.++++.+..+
T Consensus 381 d~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 381 DVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred hHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 555555555555441 11111 4455555555555443 45555555566655666666666666
Q ss_pred HHHHHHcCcCCCHhhHHHHHHHhhccCcccCc------------cccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 276 LRDVIVANVKPNTVTIVSVLPACLKLAALPQG------------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 276 ~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
|++..+-+ +-|-.+|......-...|+.+.+ ..-....|.+.|+--...|.+++|..+++++.+
T Consensus 460 YEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 460 YEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 66666543 22334444444444444555443 222334566666666667777777777776665
No 63
>PF12854 PPR_1: PPR repeat
Probab=98.83 E-value=3e-09 Score=57.37 Aligned_cols=32 Identities=31% Similarity=0.490 Sum_probs=21.1
Q ss_pred ccCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 95 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666655
No 64
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=7.5e-06 Score=70.27 Aligned_cols=306 Identities=12% Similarity=0.128 Sum_probs=220.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHh
Q 038758 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIK 112 (354)
Q Consensus 33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 112 (354)
|---+..=.++.....|..++++....=++.|.. |---+..=-..|++..|.++|+.-.+- .|+...|.+.|..=.+
T Consensus 110 WlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElR 186 (677)
T KOG1915|consen 110 WLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELR 186 (677)
T ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHH
Confidence 4444566678899999999999998764444444 444444456789999999999988764 8999999999999999
Q ss_pred cCChhHHHHHHHhh---ccccchhhHHHHHHHhcCchhHHHHHhccCCC-------------------------------
Q 038758 113 CGRMEITSGLFEEM---DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ------------------------------- 158 (354)
Q Consensus 113 ~g~~~~a~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------------------------------- 158 (354)
...++.|..++++. .|++..|-.....--++|++..|.++|+...+
T Consensus 187 ykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~i 266 (677)
T KOG1915|consen 187 YKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFI 266 (677)
T ss_pred hhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998 78888888888888888888888887765531
Q ss_pred ----CChhhh---HHHHHHHH----hCCChhHHHHHH---HHHHh--hhcCCCCCcchHHHHHHHhhhhcCccccchhhh
Q 038758 159 ----KDLVSW---NAMLAGYA----LGGFREEVTNLL---DEMEM--IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222 (354)
Q Consensus 159 ----~~~~~~---~~li~~~~----~~~~~~~a~~~~---~~m~~--~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 222 (354)
.|...- .-|-..|. +-|+.....+.. +.++- ....-+.|-.++--.++.-...|+.+...++++
T Consensus 267 ykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yE 346 (677)
T KOG1915|consen 267 YKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYE 346 (677)
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHH
Confidence 011110 12223322 335554444332 22220 011223344556666666777899999999999
Q ss_pred Hhhhhcccccc--------------------ccchhHHHHHHhcccC---CCCcchHHHHHHHHH----hcCCHHHHHHH
Q 038758 223 YVLRHHIHLST--------------------ACGFVICSCSVFNQLS---TRDVVVWNSIISAFV----RSGQVVDALDL 275 (354)
Q Consensus 223 ~~~~~~~~~~~--------------------~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~----~~g~~~~a~~~ 275 (354)
.....-.+... ...+.+.+.++|+... +...+||.-+--.|+ ++.+...|.++
T Consensus 347 rAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARki 426 (677)
T KOG1915|consen 347 RAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKI 426 (677)
T ss_pred HHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHH
Confidence 88876554333 5667777777776543 456677766554444 56789999999
Q ss_pred HHHHHHcCcCCCHhhHHHHHHHhhccCcccCc---------ccc-chhHHHHHHHHHHhcCChhHHHHHhhcCCC-CCc
Q 038758 276 LRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LGT-GSFVWNALIDMYGRCGAIQKSRKIFVLMPH-KNL 343 (354)
Q Consensus 276 ~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~---------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~ 343 (354)
+.... |..|...+|-..|..-.+.++++.. +.| |..+|.-....-...|+.+.|..+|+-... |-.
T Consensus 427 LG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~l 503 (677)
T KOG1915|consen 427 LGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPAL 503 (677)
T ss_pred HHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccc
Confidence 98887 8899999999999999999998887 555 678888888888899999999999997765 543
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.78 E-value=1e-06 Score=68.39 Aligned_cols=191 Identities=11% Similarity=-0.004 Sum_probs=154.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
+.-.|--.|...|++..|..-+++..+++ +-+..+|..+...|.+.|..+.|.+-|+...+.. +-+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 56667778999999999999999999875 4455678888888999999999999999988775 667788999999999
Q ss_pred hcCChhHHHHHHHhh------ccccchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHH
Q 038758 112 KCGRMEITSGLFEEM------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTN 182 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~ 182 (354)
..|++++|...|++. .....+|..+.-+..+.|+.+.|+..|++-.+ | ...+.-.+.....+.|++-.|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 999999999999988 33456778888888899999999999988765 2 34566777888889999999999
Q ss_pred HHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhh
Q 038758 183 LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH 227 (354)
Q Consensus 183 ~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 227 (354)
.++... ..+ .++..+.-.-|+.--+.|+.+.+...-.++.+.
T Consensus 195 ~~~~~~--~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 195 YLERYQ--QRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHH--hcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 998885 444 488888888888778888877776655554443
No 66
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.75 E-value=1.8e-06 Score=67.06 Aligned_cols=197 Identities=9% Similarity=-0.030 Sum_probs=146.2
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhc
Q 038758 68 CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKC 143 (354)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~ 143 (354)
...|.-.|...|+...|.+-++..++.. +-+..+|..+...|.+.|+.+.|.+.|++. +.+..+.|.....+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 4556668889999999999999999875 556778999999999999999999999987 66788889999999999
Q ss_pred CchhHHHHHhccCCC-C----ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccc
Q 038758 144 RYLKVSHCKFSKIKQ-K----DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218 (354)
Q Consensus 144 ~~~~~a~~~~~~~~~-~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 218 (354)
|.+++|...|++... | -..+|..+.-+..+.|+.+.|.+.|+...++... ...+.-.+.....+.|+.-.|.
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~---~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ---FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC---CChHHHHHHHHHHhcccchHHH
Confidence 999999999987764 3 3457888888888899999999999887622222 2345556666677778888887
Q ss_pred hhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhH
Q 038758 219 AIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI 291 (354)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 291 (354)
..++.....+ .++....-..|..--..|+.+.+-+.=.++.+. -|...-|
T Consensus 194 ~~~~~~~~~~---------------------~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 194 LYLERYQQRG---------------------GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred HHHHHHHhcc---------------------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 7777766655 344444444556566677777776665555533 4554443
No 67
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2.9e-06 Score=74.15 Aligned_cols=237 Identities=11% Similarity=-0.003 Sum_probs=171.1
Q ss_pred cccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHH----HHhhccccchhhHHHHHH
Q 038758 65 HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGL----FEEMDQDFLVNNSLIDFY 140 (354)
Q Consensus 65 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~~~~~~~~~~~li~~~ 140 (354)
......-.+.|...+++++..++.+...+.. ++....+..-|.++...|+..+...+ .+..+....+|-++.--|
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH
Confidence 3334444556678889999999999999875 88888888888899999887665444 444478899999999999
Q ss_pred HhcCchhHHHHHhccCCCCC---hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCC-CCCcchHHHHHHHhhhhcCccc
Q 038758 141 AKCRYLKVSHCKFSKIKQKD---LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDM-QPNTISLSGVLAACAQVKGVKL 216 (354)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~p~~~t~~~ll~~~~~~~~~~~ 216 (354)
.-.|+..+|.+.|.+...-| ...|-.....|.-.|..|+|...|...-+.-.|. .|. --+---|.+.++.+.
T Consensus 323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~----LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS----LYLGMEYMRTNNLKL 398 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH----HHHHHHHHHhccHHH
Confidence 99999999999998876543 3468888889999999999999988775212232 222 122223778899999
Q ss_pred cchhhhHhhhhcccccc----------ccchhHHHHHHhcccCC----------CCcchHHHHHHHHHhcCCHHHHHHHH
Q 038758 217 GKAIHGYVLRHHIHLST----------ACGFVICSCSVFNQLST----------RDVVVWNSIISAFVRSGQVVDALDLL 276 (354)
Q Consensus 217 a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~~----------~~~~~~~~li~~~~~~g~~~~a~~~~ 276 (354)
|.++|.+........+. ..+.+.+|...|..... ....+++.|-++|.+.+.+++|+..+
T Consensus 399 Ae~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 399 AEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 99999887766544333 67778888888776541 13456788888899999999999999
Q ss_pred HHHHHcCcCCCHhhHHHHHHHhhccCcccCc
Q 038758 277 RDVIVANVKPNTVTIVSVLPACLKLAALPQG 307 (354)
Q Consensus 277 ~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~ 307 (354)
++..... +-|..++.++--.+...|+++.|
T Consensus 479 q~aL~l~-~k~~~~~asig~iy~llgnld~A 508 (611)
T KOG1173|consen 479 QKALLLS-PKDASTHASIGYIYHLLGNLDKA 508 (611)
T ss_pred HHHHHcC-CCchhHHHHHHHHHHHhcChHHH
Confidence 8887542 33555544444444444444443
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.74 E-value=1.1e-06 Score=74.40 Aligned_cols=193 Identities=9% Similarity=-0.012 Sum_probs=136.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|..+-..+.+.|++++|...|++..+.. +.+...|+.+...+...|+++.|.+.|+...+.. +-+..++..+..++.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 46667777889999999999999998864 3356779999999999999999999999998764 445678888999999
Q ss_pred hcCChhHHHHHHHhh---ccccchhhHHHHHHHhcCchhHHHHHhccCCC-CChhhhHHHHHHHHhCCChhHHHHHHHHH
Q 038758 112 KCGRMEITSGLFEEM---DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-KDLVSWNAMLAGYALGGFREEVTNLLDEM 187 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m 187 (354)
..|++++|.+.|++. .|+..........+...++.++|...|++... .+...|.. .......|+.+.+ +.++.+
T Consensus 144 ~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~~~~lg~~~~~-~~~~~~ 221 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-NIVEFYLGKISEE-TLMERL 221 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH-HHHHHHccCCCHH-HHHHHH
Confidence 999999999999987 33332222222234456889999999965432 22233332 2233345666554 455555
Q ss_pred Hhh-hc--CCCC-CcchHHHHHHHhhhhcCccccchhhhHhhhhc
Q 038758 188 EMI-QT--DMQP-NTISLSGVLAACAQVKGVKLGKAIHGYVLRHH 228 (354)
Q Consensus 188 ~~~-~~--~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 228 (354)
... .. .+.| ....|..+-..+.+.|+.++|...|+...+..
T Consensus 222 ~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 222 KAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 310 01 1111 23568888888999999999999998888765
No 69
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=1.5e-06 Score=74.57 Aligned_cols=297 Identities=12% Similarity=0.060 Sum_probs=191.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCC-cccHHHHHHHHhccCChhhHHHHHHHHHHhccCCC-ceehhhHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPD-HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN-ACVKRPLLDL 109 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~ 109 (354)
.+-+.-+-|.++|.+++|++.+.+..+. .|| ...|...-..|...|+++++.+--...++. .|+ +..+.--.++
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASA 192 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHH
Confidence 5566677788999999999999999985 688 566777777788889998877666555543 333 2233334445
Q ss_pred HHhcCChhHHHH----------------------HHHhh-----------------------------------------
Q 038758 110 FIKCGRMEITSG----------------------LFEEM----------------------------------------- 126 (354)
Q Consensus 110 ~~~~g~~~~a~~----------------------~~~~~----------------------------------------- 126 (354)
+-..|++++|+. ++...
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 555555555432 22111
Q ss_pred ------------------------------------ccccchhh-------HHH-------HHHHhcCchhHHHHHhccC
Q 038758 127 ------------------------------------DQDFLVNN-------SLI-------DFYAKCRYLKVSHCKFSKI 156 (354)
Q Consensus 127 ------------------------------------~~~~~~~~-------~li-------~~~~~~~~~~~a~~~~~~~ 156 (354)
......++ .+. ..+.-.|+.-+|..-|+..
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 00000000 001 1122334444455445444
Q ss_pred CC--C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCC-CcchHHHHHHHhhhhcCccccchhhhHhhhhccccc
Q 038758 157 KQ--K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP-NTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS 232 (354)
Q Consensus 157 ~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 232 (354)
.. | +...|--+..+|....+.++..+.|++.. .+.| |+.+|..--+...-.+++++|..=|+..........
T Consensus 353 I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~----~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~ 428 (606)
T KOG0547|consen 353 IKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAE----DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENA 428 (606)
T ss_pred HhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHH----hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhh
Confidence 32 2 22236667778889999999999999886 2333 456677777777777788888877777666554433
Q ss_pred c----------ccchhHHHHHHhcccC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCC-------HhhHH
Q 038758 233 T----------ACGFVICSCSVFNQLS---TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN-------TVTIV 292 (354)
Q Consensus 233 ~----------~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-------~~t~~ 292 (354)
. +.++++++...|+..+ +.-...||..-..+..++++++|.+-|+...+. .|+ ..++.
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV 506 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLV 506 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhh
Confidence 2 7788899999998876 335678999999999999999999999998754 333 22221
Q ss_pred H--HHHHhhccCcccCc---------ccc-chhHHHHHHHHHHhcCChhHHHHHhhcCC
Q 038758 293 S--VLPACLKLAALPQG---------LGT-GSFVWNALIDMYGRCGAIQKSRKIFVLMP 339 (354)
Q Consensus 293 ~--li~~~~~~~~~~~~---------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (354)
. ++.. -=.+++..| +.| ....|.+|...-.+.|++++|.++|++-.
T Consensus 507 ~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 507 HKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1 1111 111444443 333 35689999999999999999999998653
No 70
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=4e-07 Score=78.03 Aligned_cols=217 Identities=10% Similarity=0.005 Sum_probs=142.3
Q ss_pred hcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHH
Q 038758 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSG 121 (354)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 121 (354)
-.|+.-.|.+-|+........++.. |.-+-..|....+.++..+.|+...+.+ +-|+.+|..-...+.-.++++.|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence 3477777777777777765333332 6666667778888888888888877766 6677777777777777778888888
Q ss_pred HHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhh---
Q 038758 122 LFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ--- 191 (354)
Q Consensus 122 ~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--- 191 (354)
=|++. +.+...|-.+.-+.-+.+.+++++..|++... | .+..|+.....+...+++++|.+.|+...+.+
T Consensus 416 DF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~ 495 (606)
T KOG0547|consen 416 DFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPRE 495 (606)
T ss_pred HHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc
Confidence 77776 44555666666666677788888888877764 3 35677777778888888888888887765211
Q ss_pred cCCCCCcchHHH-HHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHH
Q 038758 192 TDMQPNTISLSG-VLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270 (354)
Q Consensus 192 ~~~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 270 (354)
+++..+..++.. -+-.+--.+++..|..++....+.. +.....|-+|-..-.++|+.+
T Consensus 496 ~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D---------------------pkce~A~~tlaq~~lQ~~~i~ 554 (606)
T KOG0547|consen 496 HLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELD---------------------PKCEQAYETLAQFELQRGKID 554 (606)
T ss_pred ccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccC---------------------chHHHHHHHHHHHHHHHhhHH
Confidence 111111111110 0001112244444444444444332 335578899999999999999
Q ss_pred HHHHHHHHHHH
Q 038758 271 DALDLLRDVIV 281 (354)
Q Consensus 271 ~a~~~~~~m~~ 281 (354)
+|+++|++-..
T Consensus 555 eAielFEksa~ 565 (606)
T KOG0547|consen 555 EAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 71
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.71 E-value=1.6e-06 Score=80.33 Aligned_cols=245 Identities=12% Similarity=0.070 Sum_probs=125.0
Q ss_pred cCCcccHHHHHHHHhccCChhhHHHHHHHHHHh---ccCCCc------eehhhHHHHHHhcCChhHHHHHHHhh---ccc
Q 038758 62 RPDHFVCPKVYKACSELKDYRVGKDVYDYMISI---KFEGNA------CVKRPLLDLFIKCGRMEITSGLFEEM---DQD 129 (354)
Q Consensus 62 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~---~~~ 129 (354)
.+.....|.+.......|++..|...|...+.. ...++. .+--.+..++-..++.+.|.+.|..+ .|.
T Consensus 449 ~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~ 528 (1018)
T KOG2002|consen 449 QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG 528 (1018)
T ss_pred CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch
Confidence 344455555555555555555555555555433 111111 11223344444445555555555555 111
Q ss_pred -cchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHH
Q 038758 130 -FLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205 (354)
Q Consensus 130 -~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll 205 (354)
...|-.+..+.-..++..+|...+....+ .++..+..+-..+.+..+|..|.+-|+...+ .....+|+++...|-
T Consensus 529 YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~-~~~~~~D~YsliaLG 607 (1018)
T KOG2002|consen 529 YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILK-KTSTKTDAYSLIALG 607 (1018)
T ss_pred hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHh-hhccCCchhHHHHhh
Confidence 11111222222223445555555554442 2333444444455555555555554444432 222224444444444
Q ss_pred HHhhh------------hcCccccchhhhHhhhhcccccc----------ccchhHHHHHHhcccC---CCCcchHHHHH
Q 038758 206 AACAQ------------VKGVKLGKAIHGYVLRHHIHLST----------ACGFVICSCSVFNQLS---TRDVVVWNSII 260 (354)
Q Consensus 206 ~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~---~~~~~~~~~li 260 (354)
+.|.+ .+..++|.++|.++++.....-- ..|++.+|..+|..+. ..+..+|-.+.
T Consensus 608 N~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNla 687 (1018)
T KOG2002|consen 608 NVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLA 687 (1018)
T ss_pred HHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHH
Confidence 43321 12345555555555544311100 5556666666665554 23456788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc-CcCCCHhhHHHHHHHhhccCcccCc
Q 038758 261 SAFVRSGQVVDALDLLRDVIVA-NVKPNTVTIVSVLPACLKLAALPQG 307 (354)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~~~~~~~~ 307 (354)
+.|+..|++..|+++|+...+. .-.-+......|-+++...|.+.++
T Consensus 688 h~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ea 735 (1018)
T KOG2002|consen 688 HCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEA 735 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHH
Confidence 8888888888888888887554 3344556677777888888877665
No 72
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=3.6e-06 Score=69.54 Aligned_cols=150 Identities=11% Similarity=0.097 Sum_probs=89.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChh
Q 038758 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRME 117 (354)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 117 (354)
.-+...+++..|..+++.-...+-+-...+--.+...+...|++++|...+..+.+.. .|+...+-.|..++.-.|.+.
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence 3455677888888888776644422222223333444557888888888888877644 666777777777777778888
Q ss_pred HHHHHHHhhccccchhhHHH------------------------------HHHHhcCchhHHHHHhccCCC--CChhhhH
Q 038758 118 ITSGLFEEMDQDFLVNNSLI------------------------------DFYAKCRYLKVSHCKFSKIKQ--KDLVSWN 165 (354)
Q Consensus 118 ~a~~~~~~~~~~~~~~~~li------------------------------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~ 165 (354)
+|..+-...+.+......|. +..--+-.+.+|++++.+... |.-...|
T Consensus 109 eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alN 188 (557)
T KOG3785|consen 109 EAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALN 188 (557)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhH
Confidence 88877777633333333333 333333345566666665553 3333344
Q ss_pred HHH-HHHHhCCChhHHHHHHHHHH
Q 038758 166 AML-AGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 166 ~li-~~~~~~~~~~~a~~~~~~m~ 188 (354)
.-+ -+|.+..-++-+.++++-..
T Consensus 189 Vy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 189 VYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHH
Confidence 333 45566777777777776653
No 73
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.69 E-value=1.6e-07 Score=78.55 Aligned_cols=220 Identities=11% Similarity=0.106 Sum_probs=131.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccC-CCceehhhHHHHHHh
Q 038758 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE-GNACVKRPLLDLFIK 112 (354)
Q Consensus 34 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~ 112 (354)
-.+.+++...|+++.+ +.+..... .|.......+...+....+-+.+..-++.....+.. .+..........+..
T Consensus 39 ~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~ 114 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFH 114 (290)
T ss_dssp HHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 3456677777876643 34443333 566665555554444333444444433333222222 222222233355667
Q ss_pred cCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCC-ChhhhHHHHHH----HHhCCChhHHHHHHHHH
Q 038758 113 CGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK-DLVSWNAMLAG----YALGGFREEVTNLLDEM 187 (354)
Q Consensus 113 ~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~----~~~~~~~~~a~~~~~~m 187 (354)
.|++++|.+++.+- .+.......+..|.+.++++.|.+.++.|++- +-.+...+..+ +...+.+.+|..+|+++
T Consensus 115 ~~~~~~AL~~l~~~-~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El 193 (290)
T PF04733_consen 115 EGDYEEALKLLHKG-GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEEL 193 (290)
T ss_dssp CCHHHHHHCCCTTT-TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHcc-CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 78888888888775 55566677888888889999999888888762 22222233333 33344688899999888
Q ss_pred HhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcC
Q 038758 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267 (354)
Q Consensus 188 ~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 267 (354)
. ....++..+.+.+..+....|++++|+.++.+..+.. +.|..+.-.++......|
T Consensus 194 ~---~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~---------------------~~~~d~LaNliv~~~~~g 249 (290)
T PF04733_consen 194 S---DKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD---------------------PNDPDTLANLIVCSLHLG 249 (290)
T ss_dssp H---CCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC----------------------CCHHHHHHHHHHHHHHTT
T ss_pred H---hccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc---------------------cCCHHHHHHHHHHHHHhC
Confidence 4 4566777778888888888888888888877766543 234556666677777777
Q ss_pred CH-HHHHHHHHHHHHc
Q 038758 268 QV-VDALDLLRDVIVA 282 (354)
Q Consensus 268 ~~-~~a~~~~~~m~~~ 282 (354)
+. +.+.+.+.++.+.
T Consensus 250 k~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 250 KPTEAAERYLSQLKQS 265 (290)
T ss_dssp -TCHHHHHHHHHCHHH
T ss_pred CChhHHHHHHHHHHHh
Confidence 76 6677788887754
No 74
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=4.7e-06 Score=67.31 Aligned_cols=300 Identities=10% Similarity=0.045 Sum_probs=197.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhh-HHHHHH
Q 038758 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP-LLDLFI 111 (354)
Q Consensus 33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-li~~~~ 111 (354)
+++.+..+.+..+++.|.+++..-.++. +.+....+.|...|....++..|..+++++-.. .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 5667777888999999999999888764 226667888888888999999999999998754 454444432 345677
Q ss_pred hcCChhHHHHHHHhhccccchhhHHHH----HHHhcCchhHHHHHhccCCC-CChhhhHHHHHHHHhCCChhHHHHHHHH
Q 038758 112 KCGRMEITSGLFEEMDQDFLVNNSLID----FYAKCRYLKVSHCKFSKIKQ-KDLVSWNAMLAGYALGGFREEVTNLLDE 186 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~~~~~~~~~~li~----~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~ 186 (354)
+.+.+..|.++...|.......+..+. ..-..+++..+..+.++.+. .+..+.+...-...+.|+++.|.+-|+.
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHH
Confidence 889999999999988544443333322 22356888899999998873 5556655555556788999999999998
Q ss_pred HHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc--ccchhHHHHHHhcccCCCCcchHHHHH----
Q 038758 187 MEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST--ACGFVICSCSVFNQLSTRDVVVWNSII---- 260 (354)
Q Consensus 187 m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~li---- 260 (354)
..+ -.|..| ...|+..+ +..+.|+...|.+...++.++|+...+ ..|...+... .+.+..|-...-+.++
T Consensus 170 Alq-vsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiD-vrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 170 ALQ-VSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGID-VRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHh-hcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCc-hhcccchHHHHHHHHHHHhh
Confidence 873 456665 45676655 455678899999999999999886544 2222222111 0011111111222333
Q ss_pred ---HHHHhcCCHHHHHHHHHHHHH-cCcCCCHhhHHHHHHHhhccCcccCc---------ccc-chhHHHHHHHHHHhcC
Q 038758 261 ---SAFVRSGQVVDALDLLRDVIV-ANVKPNTVTIVSVLPACLKLAALPQG---------LGT-GSFVWNALIDMYGRCG 326 (354)
Q Consensus 261 ---~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~li~~~~~~~~~~~~---------~~~-~~~~~~~li~~~~~~g 326 (354)
..+.+.|+.+.|.+-+-+|.- ..-..|++|...+.-.=.. +++..+ ..| ...||..++-.||+..
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~-~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMD-ARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhccc-CCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhH
Confidence 334567888888888877742 2234566776554332221 222222 233 4567888888888888
Q ss_pred ChhHHHHHhhcCCC
Q 038758 327 AIQKSRKIFVLMPH 340 (354)
Q Consensus 327 ~~~~A~~~~~~m~~ 340 (354)
-++.|-.++-+-..
T Consensus 325 yf~lAADvLAEn~~ 338 (459)
T KOG4340|consen 325 YFDLAADVLAENAH 338 (459)
T ss_pred HHhHHHHHHhhCcc
Confidence 88888888876544
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=6.3e-07 Score=73.10 Aligned_cols=213 Identities=9% Similarity=0.004 Sum_probs=157.5
Q ss_pred hhHHHHHHhcCChhHHHHHHHhh---ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CChhhh-HHHHHHHHhCCCh
Q 038758 104 RPLLDLFIKCGRMEITSGLFEEM---DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSW-NAMLAGYALGGFR 177 (354)
Q Consensus 104 ~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~-~~li~~~~~~~~~ 177 (354)
+.+..+|.+.|.+.+|++.|+.- .+.+.+|-.|-+.|.+....+.|+.+|.+..+ |-.+|| .-+...+-..++.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 56788999999999999888876 67788888888999999999999999987765 544444 3455667777889
Q ss_pred hHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHH
Q 038758 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWN 257 (354)
Q Consensus 178 ~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 257 (354)
++|.++|+... +-...+......+...|.-.++++.|...+..+++.|. .+...|+
T Consensus 307 ~~a~~lYk~vl---k~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~---------------------~speLf~ 362 (478)
T KOG1129|consen 307 EDALQLYKLVL---KLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA---------------------QSPELFC 362 (478)
T ss_pred HHHHHHHHHHH---hcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC---------------------CChHHHh
Confidence 99999998885 22233455555666667777889999999999999986 4566788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHh--hHHHHHHHhhccCcccCc-------cc--c-chhHHHHHHHHHHhc
Q 038758 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTV--TIVSVLPACLKLAALPQG-------LG--T-GSFVWNALIDMYGRC 325 (354)
Q Consensus 258 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~li~~~~~~~~~~~~-------~~--~-~~~~~~~li~~~~~~ 325 (354)
.+--+|.-.++++-++--|++....-..|+.. .|-.+-....-.||+..+ +. + ....++.|.-.-.+.
T Consensus 363 NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~ 442 (478)
T KOG1129|consen 363 NIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARS 442 (478)
T ss_pred hHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhc
Confidence 87777888888888888888877654445432 233333333444555444 22 2 346788888888999
Q ss_pred CChhHHHHHhhcCCC
Q 038758 326 GAIQKSRKIFVLMPH 340 (354)
Q Consensus 326 g~~~~A~~~~~~m~~ 340 (354)
|+++.|..+++....
T Consensus 443 G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 443 GDILGARSLLNAAKS 457 (478)
T ss_pred CchHHHHHHHHHhhh
Confidence 999999999998776
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.60 E-value=2.8e-05 Score=68.03 Aligned_cols=261 Identities=10% Similarity=-0.028 Sum_probs=147.1
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhc----cCChhhHHHHHHHHHHhccCCC-ceehhhHHHHHHhc
Q 038758 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSE----LKDYRVGKDVYDYMISIKFEGN-ACVKRPLLDLFIKC 113 (354)
Q Consensus 39 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~ 113 (354)
.+...|++++|.+.+++..+.. +.+...+.. ...+.. .+....+.+.++. ..+..|+ ......+...+...
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHc
Confidence 4556799999999999987753 222223332 112222 3444455555443 1111222 22334556678889
Q ss_pred CChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--C---Ch--hhhHHHHHHHHhCCChhHHHH
Q 038758 114 GRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K---DL--VSWNAMLAGYALGGFREEVTN 182 (354)
Q Consensus 114 g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~---~~--~~~~~li~~~~~~~~~~~a~~ 182 (354)
|++++|.+.+++. +.+...+..+...+...|++++|...+++... | +. ..|..+...+...|++++|.+
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999987 44566778888899999999999999987664 1 21 234467788889999999999
Q ss_pred HHHHHHhhhcCC-CCCcchH-H--HHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHH-
Q 038758 183 LLDEMEMIQTDM-QPNTISL-S--GVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWN- 257 (354)
Q Consensus 183 ~~~~m~~~~~~~-~p~~~t~-~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 257 (354)
++++.. .... .+..... + .++.-+...|....+... +.+...... .. ......++
T Consensus 208 ~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~----------------~~-~~~~~~~~~ 267 (355)
T cd05804 208 IYDTHI--APSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAW----------------HF-PDHGLAFND 267 (355)
T ss_pred HHHHHh--ccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHh----------------hc-CcccchHHH
Confidence 999875 3221 1111111 1 112222223332222222 111111100 00 11112222
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhh
Q 038758 258 -SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFV 336 (354)
Q Consensus 258 -~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 336 (354)
....++...|+.++|..+++.+......++..-+ ....+...-..--++.+.|+.++|.+.+.
T Consensus 268 ~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----------------~~~~~~~~~l~A~~~~~~g~~~~A~~~L~ 331 (355)
T cd05804 268 LHAALALAGAGDKDALDKLLAALKGRASSADDNKQ----------------PARDVGLPLAEALYAFAEGNYATALELLG 331 (355)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhh----------------hHHhhhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4566778899999999999998764322110000 00011112223334568888888888887
Q ss_pred cCC
Q 038758 337 LMP 339 (354)
Q Consensus 337 ~m~ 339 (354)
+..
T Consensus 332 ~al 334 (355)
T cd05804 332 PVR 334 (355)
T ss_pred HHH
Confidence 654
No 77
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.60 E-value=1.1e-07 Score=52.06 Aligned_cols=35 Identities=26% Similarity=0.720 Sum_probs=33.0
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCH
Q 038758 254 VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288 (354)
Q Consensus 254 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 288 (354)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 78
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.59 E-value=1.1e-07 Score=52.09 Aligned_cols=34 Identities=26% Similarity=0.546 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCc
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH 65 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 65 (354)
+||++|++|++.|++++|.++|++|.+.|++||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6899999999999999999999999999998874
No 79
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.58 E-value=1.3e-06 Score=73.04 Aligned_cols=212 Identities=13% Similarity=0.031 Sum_probs=137.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChh
Q 038758 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRME 117 (354)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 117 (354)
+.+.-.|++..++.-.+ ........+...-..+.+++...|+++. ++.++.+.. .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~---vl~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDS---VLSEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHH---HHHHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhH---HHHHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44455688888886555 3322222334455667788888888764 444444444 666666655555554445555
Q ss_pred HHHHHHHhh--cc----ccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhh
Q 038758 118 ITSGLFEEM--DQ----DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191 (354)
Q Consensus 118 ~a~~~~~~~--~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 191 (354)
.+..-+++. .+ +....-.....+...|++++|.+++.+. .+.......+..|.+.++++.|.+.++.|+ +
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~--~ 159 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQ--Q 159 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH--C
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHH--h
Confidence 665555444 11 1112222334567789999999999886 456667778899999999999999999998 4
Q ss_pred cCCCCCcchHHHHHHHhhh--hc--CccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcC
Q 038758 192 TDMQPNTISLSGVLAACAQ--VK--GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267 (354)
Q Consensus 192 ~~~~p~~~t~~~ll~~~~~--~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 267 (354)
. . +..+...+..++.. .| .++.|..+|+++.+.. .++..+.|.+..++...|
T Consensus 160 ~--~-eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~---------------------~~t~~~lng~A~~~l~~~ 215 (290)
T PF04733_consen 160 I--D-EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF---------------------GSTPKLLNGLAVCHLQLG 215 (290)
T ss_dssp C--S-CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-----------------------SHHHHHHHHHHHHHCT
T ss_pred c--C-CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc---------------------CCCHHHHHHHHHHHHHhC
Confidence 3 2 34556666666543 23 5788888888876542 457788899999999999
Q ss_pred CHHHHHHHHHHHHHc
Q 038758 268 QVVDALDLLRDVIVA 282 (354)
Q Consensus 268 ~~~~a~~~~~~m~~~ 282 (354)
++++|.+++.+..+.
T Consensus 216 ~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 216 HYEEAEELLEEALEK 230 (290)
T ss_dssp -HHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999997644
No 80
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.55 E-value=3.4e-06 Score=80.94 Aligned_cols=197 Identities=15% Similarity=0.161 Sum_probs=101.5
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHh-ccCC---CceehhhHHHHHHhcCChhHHHHHHHhhcc---ccchhhHHHHHH
Q 038758 68 CPKVYKACSELKDYRVGKDVYDYMISI-KFEG---NACVKRPLLDLFIKCGRMEITSGLFEEMDQ---DFLVNNSLIDFY 140 (354)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~li~~~ 140 (354)
|-.-|......++.+.|+++.++..+. ++.- -...|.++++.-...|.-+...++|++... .-.+|..|...|
T Consensus 1461 WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy 1540 (1710)
T KOG1070|consen 1461 WIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIY 1540 (1710)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 444444444555555555555544432 1110 122344444444444444555555555421 122334444555
Q ss_pred HhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC---cchHHHHHHHhhhhcCc
Q 038758 141 AKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN---TISLSGVLAACAQVKGV 214 (354)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~---~~t~~~ll~~~~~~~~~ 214 (354)
.+...+++|.++++.|.+ .....|...+..+.+..+-+.|..++.+.. + .-|- .....-....-.+.|+.
T Consensus 1541 ~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL--~--~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1541 EKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRAL--K--SLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHH--h--hcchhhhHHHHHHHHHHHhhcCCc
Confidence 555555555555554443 233344444445555555455555554443 1 1111 11122222223344444
Q ss_pred cccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHh
Q 038758 215 KLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289 (354)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 289 (354)
+.++.+|+..+... +.-...|+.+|+.=.++|+.+.+..+|++....++.|-..
T Consensus 1617 eRGRtlfEgll~ay---------------------PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAY---------------------PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred hhhHHHHHHHHhhC---------------------ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 44444444444332 3456789999999999999999999999999998887653
No 81
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.51 E-value=2.4e-07 Score=50.25 Aligned_cols=34 Identities=29% Similarity=0.506 Sum_probs=32.3
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCC
Q 038758 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286 (354)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 286 (354)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999988
No 82
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.47 E-value=0.00022 Score=64.05 Aligned_cols=124 Identities=11% Similarity=0.050 Sum_probs=63.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH----HHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCC--CceehhhH
Q 038758 33 WTSMMGMYNVLGYYEEIVNLFYL----MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG--NACVKRPL 106 (354)
Q Consensus 33 y~~li~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l 106 (354)
|-+--..=-.+|+.+.+..++++ +...|+..+...|-.=...|-..|.+-.+..+.......|+.- ...||..-
T Consensus 443 Witaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~d 522 (913)
T KOG0495|consen 443 WITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDD 522 (913)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhh
Confidence 33333344456666666666554 2334666666666555555555555555555555555554432 23355555
Q ss_pred HHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccC
Q 038758 107 LDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKI 156 (354)
Q Consensus 107 i~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 156 (354)
...|.+.+-++-|..+|... +.+...|......--..|..++...+|++.
T Consensus 523 a~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqka 576 (913)
T KOG0495|consen 523 AQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKA 576 (913)
T ss_pred HHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 55555555555555555544 233344444444444444444444444443
No 83
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=8e-05 Score=65.82 Aligned_cols=313 Identities=10% Similarity=0.029 Sum_probs=179.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhcc-CCCceehhhHHHHHHhcC
Q 038758 36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKF-EGNACVKRPLLDLFIKCG 114 (354)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g 114 (354)
=++.+...|++++|.+...++...+ +-+...+..=+-+..+.++++.|..+.+ ..+. ..+..-+.--.-+..+.+
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGALLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcchhhhcchhhHHHHHHHHHcc
Confidence 3566778899999999999988765 3344445555557778888888774443 2221 111111111223334567
Q ss_pred ChhHHHHHHHhhccccc-hhhHHHHHHHhcCchhHHHHHhccCCC-------------------------------CChh
Q 038758 115 RMEITSGLFEEMDQDFL-VNNSLIDFYAKCRYLKVSHCKFSKIKQ-------------------------------KDLV 162 (354)
Q Consensus 115 ~~~~a~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~-------------------------------~~~~ 162 (354)
..|+|...++-+.++.. +...-...+-+.|++++|.++|+.+.+ ....
T Consensus 94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~ 173 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPED 173 (652)
T ss_pred cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcc
Confidence 88888877775544332 444445566677888888888776621 0112
Q ss_pred hhHHHHH---HHHhCCChhHHHHHHHHHHh-----h-h-----cCCCCCcchHH-HHHHHhhhhcCccccchhhhHhhhh
Q 038758 163 SWNAMLA---GYALGGFREEVTNLLDEMEM-----I-Q-----TDMQPNTISLS-GVLAACAQVKGVKLGKAIHGYVLRH 227 (354)
Q Consensus 163 ~~~~li~---~~~~~~~~~~a~~~~~~m~~-----~-~-----~~~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~ 227 (354)
+|..+-+ .+...|++.+|+++++...+ . . .++.-+..+.. .+.-++-..|+.++|..++..+.+.
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 3433332 34567888888888887710 0 0 01111111111 2222345678888888888887777
Q ss_pred cccccc--------------------------------------------------------------------------
Q 038758 228 HIHLST-------------------------------------------------------------------------- 233 (354)
Q Consensus 228 ~~~~~~-------------------------------------------------------------------------- 233 (354)
......
T Consensus 254 ~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l 333 (652)
T KOG2376|consen 254 NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL 333 (652)
T ss_pred cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC
Confidence 655543
Q ss_pred -------------------ccchhHHHHHHhcccC--CC--CcchHHHHHHHHHhcCCHHHHHHHHH--------HHHHc
Q 038758 234 -------------------ACGFVICSCSVFNQLS--TR--DVVVWNSIISAFVRSGQVVDALDLLR--------DVIVA 282 (354)
Q Consensus 234 -------------------~~~~~~~a~~~~~~~~--~~--~~~~~~~li~~~~~~g~~~~a~~~~~--------~m~~~ 282 (354)
......++..++.... .| ....--.++......|+++.|.+++. .+.+.
T Consensus 334 p~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~ 413 (652)
T KOG2376|consen 334 PGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA 413 (652)
T ss_pred CccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh
Confidence 0001222222222221 11 12334455666778999999999999 66666
Q ss_pred CcCCCHhhHHHHHHHhhccCcccCc-------------cccchh----HHHHHHHHHHhcCChhHHHHHhhcCCC---CC
Q 038758 283 NVKPNTVTIVSVLPACLKLAALPQG-------------LGTGSF----VWNALIDMYGRCGAIQKSRKIFVLMPH---KN 342 (354)
Q Consensus 283 g~~p~~~t~~~li~~~~~~~~~~~~-------------~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~---~~ 342 (354)
+..|-. ...+...+.+.++-+.+ -.+... ++.-+...-.+.|+-++|..+++++.+ +|
T Consensus 414 ~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d 491 (652)
T KOG2376|consen 414 KHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPND 491 (652)
T ss_pred ccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCch
Confidence 666654 44555556666555444 112222 233334444678999999999999987 56
Q ss_pred cccHHHhhhhcC
Q 038758 343 LVSWNVMISVYG 354 (354)
Q Consensus 343 ~~~~~~li~~~~ 354 (354)
......++.+||
T Consensus 492 ~~~l~~lV~a~~ 503 (652)
T KOG2376|consen 492 TDLLVQLVTAYA 503 (652)
T ss_pred HHHHHHHHHHHH
Confidence 666666666654
No 84
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=0.00013 Score=68.44 Aligned_cols=282 Identities=12% Similarity=0.080 Sum_probs=189.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCC--CcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHH
Q 038758 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKG--VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLF 110 (354)
Q Consensus 33 y~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 110 (354)
-+.-+.++...+-+.+-.+++++..-.+ ..-+.-.-|.|+-...+. +..++.++.+.+...+ .|+ +....
T Consensus 987 vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------ia~ia 1058 (1666)
T KOG0985|consen 987 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------IAEIA 1058 (1666)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------HHHHH
Confidence 3455677788888888888888876432 111222233444433333 4455566666555433 222 22334
Q ss_pred HhcCChhHHHHHHHhh--------------------------ccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhh
Q 038758 111 IKCGRMEITSGLFEEM--------------------------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164 (354)
Q Consensus 111 ~~~g~~~~a~~~~~~~--------------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 164 (354)
...+-+++|.++|+.. .....+|+.+.++-.+.|.+.+|.+-|-+. .|+..|
T Consensus 1059 i~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--dDps~y 1136 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--DDPSNY 1136 (1666)
T ss_pred hhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc--CCcHHH
Confidence 4445555565555554 345678899999999999999998888665 466788
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc----ccchhHH
Q 038758 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST----ACGFVIC 240 (354)
Q Consensus 165 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~ 240 (354)
.-++....+.|.|++-.+.+...+ ++.-.|... +.++-+|++.+++.+.+.++.---...+..-. ..+.++.
T Consensus 1137 ~eVi~~a~~~~~~edLv~yL~MaR--kk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~a 1212 (1666)
T KOG0985|consen 1137 LEVIDVASRTGKYEDLVKYLLMAR--KKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEA 1212 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHH--HhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHH
Confidence 999999999999999999998777 666666655 47788999999887776654211111110000 4445555
Q ss_pred HHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc------cccchhH
Q 038758 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTGSFV 314 (354)
Q Consensus 241 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~------~~~~~~~ 314 (354)
|.-+|. ++..|..|...++..|++..|.+.-++.- +..||--+--+|...+.+..+ +-.-..-
T Consensus 1213 Akl~y~-----~vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlAQiCGL~iivhade 1281 (1666)
T KOG0985|consen 1213 AKLLYS-----NVSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLAQICGLNIIVHADE 1281 (1666)
T ss_pred HHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHHHhcCceEEEehHh
Confidence 555554 45678888889999999998887665542 567888888899988888776 3333445
Q ss_pred HHHHHHHHHhcCChhHHHHHhhcCC
Q 038758 315 WNALIDMYGRCGAIQKSRKIFVLMP 339 (354)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m~ 339 (354)
..-|++.|-..|-+++...+++.-.
T Consensus 1282 Leeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1282 LEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 7789999999999999999888654
No 85
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.46 E-value=3.2e-07 Score=49.75 Aligned_cols=32 Identities=22% Similarity=0.455 Sum_probs=28.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcC
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRP 63 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 63 (354)
+||.+|++|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 68888999999999999999999999888887
No 86
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.41 E-value=1.9e-05 Score=71.18 Aligned_cols=256 Identities=11% Similarity=0.101 Sum_probs=158.1
Q ss_pred HHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh---ccccchhh-HHHHHHHhc-----
Q 038758 73 KACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM---DQDFLVNN-SLIDFYAKC----- 143 (354)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~-~li~~~~~~----- 143 (354)
..+...|++++|.+.++.-.+ .+.............+.+.|+.++|..+|..+ .|+...|- .+..+....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 345788999999999976443 23444556778889999999999999999998 55555554 444554222
Q ss_pred CchhHHHHHhccCCC--CChhhhHHHHHHHHhCCChh-HHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchh
Q 038758 144 RYLKVSHCKFSKIKQ--KDLVSWNAMLAGYALGGFRE-EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220 (354)
Q Consensus 144 ~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 220 (354)
.+.+...++++++.. |.......+.-.+..-..+. .+...+..+. .+|+++ +|+.+-..|.......-...+
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l--~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQL--RKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHH--hcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 246677777777654 43333333333333222332 3445555665 667655 444444444433222222333
Q ss_pred hhHhhhhcccccc-ccchhHHHHHHhcccCCCCcc--hHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCC-HhhHHHHHH
Q 038758 221 HGYVLRHHIHLST-ACGFVICSCSVFNQLSTRDVV--VWNSIISAFVRSGQVVDALDLLRDVIVANVKPN-TVTIVSVLP 296 (354)
Q Consensus 221 ~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~ 296 (354)
+.......-.... ..+. =.....|... ++..+-..|-..|++++|++..++..++ .|+ ...|..-..
T Consensus 166 ~~~~~~~l~~~~~~~~~~-------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Kar 236 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGD-------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKAR 236 (517)
T ss_pred HHHHHHhhcccCCCCCcc-------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHH
Confidence 3222221110000 0000 0000134443 4455667788999999999999999876 566 456777778
Q ss_pred HhhccCcccCc---------ccc-chhHHHHHHHHHHhcCChhHHHHHhhcCCCCCc
Q 038758 297 ACLKLAALPQG---------LGT-GSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNL 343 (354)
Q Consensus 297 ~~~~~~~~~~~---------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 343 (354)
.+-+.|++.+| +.+ |-.+-+-....+.|+|++++|.+++....+++.
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 88899999887 333 556667778889999999999999999888653
No 87
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.39 E-value=0.00017 Score=64.52 Aligned_cols=254 Identities=13% Similarity=0.154 Sum_probs=165.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCC----------------------hhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD----------------------YRVGKDVYD 89 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~----------------------~~~a~~~~~ 89 (354)
-|++|...|.++|.+++|.++|++..+. ..+...|..+.++|..... ++....-|+
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 8999999999999999999999998875 4566667777777654321 222223333
Q ss_pred HHHHhc-c----------CCCceehhhHHHHHHhcCChhHHHHHHHhh----cc------ccchhhHHHHHHHhcCchhH
Q 038758 90 YMISIK-F----------EGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQ------DFLVNNSLIDFYAKCRYLKV 148 (354)
Q Consensus 90 ~m~~~~-~----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~------~~~~~~~li~~~~~~~~~~~ 148 (354)
.+...+ . +-++..|..-+ -+..|+..+....|.+. .| -...|..+.+.|-..|+++.
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence 333221 0 11122222211 22345555555555555 11 23467788899999999999
Q ss_pred HHHHhccCCCCCh-------hhhHHHHHHHHhCCChhHHHHHHHHHHhhh---------cCCCC------CcchHHHHHH
Q 038758 149 SHCKFSKIKQKDL-------VSWNAMLAGYALGGFREEVTNLLDEMEMIQ---------TDMQP------NTISLSGVLA 206 (354)
Q Consensus 149 a~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------~~~~p------~~~t~~~ll~ 206 (354)
|..+|++..+.+- .+|......=.++.+++.|+++.+.....- .+.++ +...|+..+.
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 9999998876332 345555555667778888888877663100 00111 1223444444
Q ss_pred HhhhhcCccccchhhhHhhhhcccccc----------ccchhHHHHHHhcccC----CCCc-chHHHHHHHHHhc---CC
Q 038758 207 ACAQVKGVKLGKAIHGYVLRHHIHLST----------ACGFVICSCSVFNQLS----TRDV-VVWNSIISAFVRS---GQ 268 (354)
Q Consensus 207 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~----~~~~-~~~~~li~~~~~~---g~ 268 (354)
.--..|-++....+++.+.+..+..+. ...-++++.++|++.. -|++ ..||+.+.-+.++ ..
T Consensus 486 leEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k 565 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK 565 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 445567888888999999888776655 6667888999999876 3443 5688877766653 36
Q ss_pred HHHHHHHHHHHHHcCcCCCHhh
Q 038758 269 VVDALDLLRDVIVANVKPNTVT 290 (354)
Q Consensus 269 ~~~a~~~~~~m~~~g~~p~~~t 290 (354)
.+.|..+|++..+ |++|...-
T Consensus 566 lEraRdLFEqaL~-~Cpp~~aK 586 (835)
T KOG2047|consen 566 LERARDLFEQALD-GCPPEHAK 586 (835)
T ss_pred HHHHHHHHHHHHh-cCCHHHHH
Confidence 8999999999998 77776543
No 88
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=5.2e-05 Score=68.58 Aligned_cols=228 Identities=11% Similarity=0.087 Sum_probs=173.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhc
Q 038758 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKC 113 (354)
Q Consensus 34 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 113 (354)
-.+...+.+.|-...|..++++..- |.-++..|...|+..+|..+..+..+ -+|++..|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccCh
Confidence 4456677788999999999998763 77788889999999999999888777 389999999999999999
Q ss_pred CChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhh
Q 038758 114 GRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190 (354)
Q Consensus 114 g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 190 (354)
.-+++|.++++..... .-..+.....+.++++++.+.|+.-.+ -...+|-..-.+..+.++++.|.+.|....
T Consensus 471 s~yEkawElsn~~sar--A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcv-- 546 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR--AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV-- 546 (777)
T ss_pred HHHHHHHHHhhhhhHH--HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHh--
Confidence 9999999998876332 112222223347899999999986543 345677777788889999999999998875
Q ss_pred hcCCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCH
Q 038758 191 QTDMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269 (354)
Q Consensus 191 ~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~ 269 (354)
...|| ...||.+-.++.+.+...+|...+.+..+.+. .+...|...+....+.|.+
T Consensus 547 --tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~---------------------~~w~iWENymlvsvdvge~ 603 (777)
T KOG1128|consen 547 --TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY---------------------QHWQIWENYMLVSVDVGEF 603 (777)
T ss_pred --hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC---------------------CCCeeeechhhhhhhcccH
Confidence 34555 56799999999999999999999988887764 3456677788888999999
Q ss_pred HHHHHHHHHHHHcCc-CCCHhhHHHHHHHhh
Q 038758 270 VDALDLLRDVIVANV-KPNTVTIVSVLPACL 299 (354)
Q Consensus 270 ~~a~~~~~~m~~~g~-~p~~~t~~~li~~~~ 299 (354)
++|++.+.++.+... .-|......++....
T Consensus 604 eda~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 604 EDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 999999998865321 124444444444443
No 89
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=0.00092 Score=56.91 Aligned_cols=265 Identities=12% Similarity=0.043 Sum_probs=157.9
Q ss_pred CChhHHHHHHHHHHhCC-CcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHH
Q 038758 44 GYYEEIVNLFYLMIDKG-VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGL 122 (354)
Q Consensus 44 ~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 122 (354)
++...+...+-.+.... ++-|......+.+.+...|+.++|...|+...-.+ +-+........-.+...|+.+....+
T Consensus 210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L 288 (564)
T KOG1174|consen 210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSAL 288 (564)
T ss_pred cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHH
Confidence 33334444333333332 44556667788888888899998888888776443 22232333334445677888877777
Q ss_pred HHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHH---HHHHHhCCChhHHHHHHHHHHhhhcCCC
Q 038758 123 FEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAM---LAGYALGGFREEVTNLLDEMEMIQTDMQ 195 (354)
Q Consensus 123 ~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~~~~~~ 195 (354)
...+ ..+...|-.-........+++.|..+-++..+.+....-.+ -..+...+++++|.=-|+..+ .+.
T Consensus 289 ~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq----~La 364 (564)
T KOG1174|consen 289 MDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQ----MLA 364 (564)
T ss_pred HHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHH----hcc
Confidence 7666 23444444444555566778888888777665444333332 355777899999988898886 445
Q ss_pred C-CcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc------------ccchhHHHHHHhcccC--CCC-cchHHHH
Q 038758 196 P-NTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST------------ACGFVICSCSVFNQLS--TRD-VVVWNSI 259 (354)
Q Consensus 196 p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------~~~~~~~a~~~~~~~~--~~~-~~~~~~l 259 (354)
| +...|.-++.+|...|.+.+|..+-....+.-..... ....-++|.+++++.. .|+ ...-+.+
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~ 444 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLI 444 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHH
Confidence 4 4678999999999999888877665554432111000 3334455666665543 232 2233444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCC
Q 038758 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339 (354)
Q Consensus 260 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (354)
...+...|...+++.++++-... .||... .+.|.+.+...+.+.+|++.|....
T Consensus 445 AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~L------------------------H~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 445 AELCQVEGPTKDIIKLLEKHLII--FPDVNL------------------------HNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHhhCccchHHHHHHHHHhh--ccccHH------------------------HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45556666777777777666532 455554 5555555555555555555555444
No 90
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.31 E-value=2.8e-05 Score=61.49 Aligned_cols=156 Identities=8% Similarity=0.020 Sum_probs=116.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcC
Q 038758 35 SMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG 114 (354)
Q Consensus 35 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 114 (354)
.-+..|...|+++.+....+.+.. |. . .+...++.+++...++...+.+ +.+...|..|...|...|
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCC
Confidence 345568889999887655533321 11 0 1223566777777787777765 778889999999999999
Q ss_pred ChhHHHHHHHhh----ccccchhhHHHHHH-HhcCc--hhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHHH
Q 038758 115 RMEITSGLFEEM----DQDFLVNNSLIDFY-AKCRY--LKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNLL 184 (354)
Q Consensus 115 ~~~~a~~~~~~~----~~~~~~~~~li~~~-~~~~~--~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~ 184 (354)
++++|...|++. +.+...+..+..++ ...|+ .++|.+++++..+ | +...+..+...+.+.|++++|...|
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999988 45677777777764 67677 5999999998875 3 5677888888999999999999999
Q ss_pred HHHHhhhcCCCCCcchHHHHHHH
Q 038758 185 DEMEMIQTDMQPNTISLSGVLAA 207 (354)
Q Consensus 185 ~~m~~~~~~~~p~~~t~~~ll~~ 207 (354)
+.+. ...+|+..-+..+ .+
T Consensus 168 ~~aL---~l~~~~~~r~~~i-~~ 186 (198)
T PRK10370 168 QKVL---DLNSPRVNRTQLV-ES 186 (198)
T ss_pred HHHH---hhCCCCccHHHHH-HH
Confidence 9995 4556666555444 54
No 91
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.27 E-value=1.4e-06 Score=46.07 Aligned_cols=31 Identities=29% Similarity=0.593 Sum_probs=29.0
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Q 038758 254 VVWNSIISAFVRSGQVVDALDLLRDVIVANV 284 (354)
Q Consensus 254 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 284 (354)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998874
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.23 E-value=0.00071 Score=59.17 Aligned_cols=153 Identities=5% Similarity=-0.112 Sum_probs=72.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHH---HHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCP---KVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLD 108 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 108 (354)
.|..+-..+...|+.+.+...+....+.. +++..... .....+...|++++|.++++...+.. +.+...+.. ..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 45566666777777887766666665542 22222111 11223456778888888888877653 333333331 11
Q ss_pred HHHh----cCChhHHHHHHHhhccc----cchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCCh
Q 038758 109 LFIK----CGRMEITSGLFEEMDQD----FLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFR 177 (354)
Q Consensus 109 ~~~~----~g~~~~a~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~ 177 (354)
.+.. .+..+.+.+.++...+. ......+...+...|++++|+..+++..+ | +...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 2222 34444444443322111 11112223344445555555555544432 1 233344444445555555
Q ss_pred hHHHHHHHHH
Q 038758 178 EEVTNLLDEM 187 (354)
Q Consensus 178 ~~a~~~~~~m 187 (354)
++|...+++.
T Consensus 165 ~eA~~~l~~~ 174 (355)
T cd05804 165 KEGIAFMESW 174 (355)
T ss_pred HHHHHHHHhh
Confidence 5555555444
No 93
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.23 E-value=8.3e-05 Score=60.89 Aligned_cols=179 Identities=12% Similarity=-0.012 Sum_probs=98.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCc----ccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCce---ehh
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH----FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC---VKR 104 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~ 104 (354)
.+-.+...+.+.|++++|...|++..... |+. ..+..+...+...|+++.|...++.+.+.. +.+.. ++.
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~ 111 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYAYY 111 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHHHH
Confidence 44556667778888888888888877653 332 345666777778888888888888887653 22222 344
Q ss_pred hHHHHHHhc--------CChhHHHHHHHhh---cccc-chhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHH
Q 038758 105 PLLDLFIKC--------GRMEITSGLFEEM---DQDF-LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYA 172 (354)
Q Consensus 105 ~li~~~~~~--------g~~~~a~~~~~~~---~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~ 172 (354)
.+..++.+. |+.+.|.+.|+++ .|+. ..+..+... +...... ......+...+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~----~~~~~~~----------~~~~~~~a~~~~ 177 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM----DYLRNRL----------AGKELYVARFYL 177 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH----HHHHHHH----------HHHHHHHHHHHH
Confidence 444445443 6677777777766 2221 111111100 0000000 000113344566
Q ss_pred hCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhh
Q 038758 173 LGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH 227 (354)
Q Consensus 173 ~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 227 (354)
+.|++++|...++.......+-+.....+..+..++.+.|+.++|...++.+...
T Consensus 178 ~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 178 KRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6677777777776665211112223455666666677777777776666655543
No 94
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.23 E-value=3.4e-05 Score=63.20 Aligned_cols=165 Identities=8% Similarity=-0.103 Sum_probs=101.0
Q ss_pred CcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCc---eehhhHHHHHHhcCChhHHHHHHHhh---ccc-cc---hh
Q 038758 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA---CVKRPLLDLFIKCGRMEITSGLFEEM---DQD-FL---VN 133 (354)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~---~~~-~~---~~ 133 (354)
....+..+...+...|+++.|...++.+.+.. +.+. ..+..+..++.+.|++++|...++++ .|+ .. ++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 44456677777888999999999999887653 2222 35677788888999999999999887 222 22 23
Q ss_pred hHHHHHHHhc--------CchhHHHHHhccCCC--CChh-hhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHH
Q 038758 134 NSLIDFYAKC--------RYLKVSHCKFSKIKQ--KDLV-SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLS 202 (354)
Q Consensus 134 ~~li~~~~~~--------~~~~~a~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~ 202 (354)
..+..++.+. |+.++|.+.|+++.. |+.. .+..+... .. ...... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~-~~---------~~~~~~----------~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM-DY---------LRNRLA----------GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH-HH---------HHHHHH----------HHHH
Confidence 3444444433 556666666666543 3221 11111100 00 000000 0012
Q ss_pred HHHHHhhhhcCccccchhhhHhhhhcccccc-------------ccchhHHHHHHhcccC
Q 038758 203 GVLAACAQVKGVKLGKAIHGYVLRHHIHLST-------------ACGFVICSCSVFNQLS 249 (354)
Q Consensus 203 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~~a~~~~~~~~ 249 (354)
.+...+.+.|++.+|...+....+.....+. ..|+.++|...++.+.
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455688899999999999988876543221 8888899888877653
No 95
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.22 E-value=1.2e-05 Score=55.20 Aligned_cols=87 Identities=18% Similarity=0.199 Sum_probs=68.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhhhcCC-CCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHH
Q 038758 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDM-QPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCS 243 (354)
Q Consensus 165 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 243 (354)
-..|..+...+++.....+|+.++ ..|+ .|+..+|+.++.+.++..
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslk--RN~i~lPsv~~Yn~VL~Si~~R~------------------------------- 75 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLK--RNGITLPSVELYNKVLKSIAKRE------------------------------- 75 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHH--hcCCCCCcHHHHHHHHHHHHHcc-------------------------------
Confidence 345666677799999999999999 9999 999999999999887552
Q ss_pred HhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhc
Q 038758 244 VFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300 (354)
Q Consensus 244 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 300 (354)
.|. ..-.+++-+.+.+|++|...+++|+..||+.++.++.+
T Consensus 76 -------lD~---------~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 76 -------LDS---------EDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred -------ccc---------hhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 221 11123456788999999999999999999988887764
No 96
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.22 E-value=7.1e-05 Score=67.92 Aligned_cols=180 Identities=12% Similarity=0.065 Sum_probs=113.9
Q ss_pred HHHHhcCchhHHHHHhccCCCCChhh--hHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCcc
Q 038758 138 DFYAKCRYLKVSHCKFSKIKQKDLVS--WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215 (354)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~ 215 (354)
.+-.....+.+|+.+++.++..++.+ |..+...|...|+++.|.++|.+.. .++-.|..|.+.|.+.
T Consensus 740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD-----------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc-----------hhHHHHHHHhccccHH
Confidence 34455667777777777776544333 6667777888888888888886553 2455666777778777
Q ss_pred ccchhhhHhhhhcccccc---------ccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCC
Q 038758 216 LGKAIHGYVLRHHIHLST---------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286 (354)
Q Consensus 216 ~a~~~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 286 (354)
.|.++-.......-.... +.|++.+|.++|-.+..|+. -|..|-+.|..+..+++.++-. | ..
T Consensus 809 da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h--~-d~ 880 (1636)
T KOG3616|consen 809 DAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHH--G-DH 880 (1636)
T ss_pred HHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhC--h-hh
Confidence 777665444322111111 67788888888887777764 4677888888888888776543 1 11
Q ss_pred CHhhHHHHHHHhhccCcccCc--cccchhHHHHHHHHHHhcCChhHHHHHhh
Q 038758 287 NTVTIVSVLPACLKLAALPQG--LGTGSFVWNALIDMYGRCGAIQKSRKIFV 336 (354)
Q Consensus 287 ~~~t~~~li~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 336 (354)
-..|.-.+-.-+-..|++..+ --....-|.+-+++|-..+-+++|.++-+
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHh
Confidence 123444555556666666555 11223336667777777777777777654
No 97
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.21 E-value=1.9e-06 Score=45.48 Aligned_cols=30 Identities=27% Similarity=0.621 Sum_probs=25.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGV 61 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~ 61 (354)
+||+||++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 688888888888888888888888888764
No 98
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.21 E-value=0.00035 Score=64.41 Aligned_cols=116 Identities=14% Similarity=0.021 Sum_probs=79.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC-CC--------cCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCcee
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-GV--------RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV 102 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~-~~--------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 102 (354)
.|..|.+.|.+.++++-|.-.+-.|... |. .|+ .+=..+.-.....|.+++|..+|.+-++.+
T Consensus 759 vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D------- 830 (1416)
T KOG3617|consen 759 VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD------- 830 (1416)
T ss_pred HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH-------
Confidence 8888999999998888888888777653 21 222 222222223357788899999998877643
Q ss_pred hhhHHHHHHhcCChhHHHHHHHhh--ccccchhhHHHHHHHhcCchhHHHHHhccCC
Q 038758 103 KRPLLDLFIKCGRMEITSGLFEEM--DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157 (354)
Q Consensus 103 ~~~li~~~~~~g~~~~a~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 157 (354)
.|=..|...|.+++|.++-+.- ..-..+|..-..-+-..+|.+.|++.|++..
T Consensus 831 --LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 831 --LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAG 885 (1416)
T ss_pred --HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 4556677788888888877654 1223456666666777788888888887764
No 99
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.19 E-value=0.0016 Score=58.60 Aligned_cols=153 Identities=11% Similarity=0.122 Sum_probs=89.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC-CCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLF 110 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 110 (354)
.|-.-+....++|+.......|+..... .+..-...|...+......+-.+.+..+++...+. . +..-+..|..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~--P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--A--PEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--C--HHHHHHHHHHH
Confidence 5555566666777777777777776543 23333445777777777777777777777777643 2 33366677777
Q ss_pred HhcCChhHHHHHHHhh-----------ccccchhhHHHHHHHhcCc---hhHHHHHhccCCC--CC--hhhhHHHHHHHH
Q 038758 111 IKCGRMEITSGLFEEM-----------DQDFLVNNSLIDFYAKCRY---LKVSHCKFSKIKQ--KD--LVSWNAMLAGYA 172 (354)
Q Consensus 111 ~~~g~~~~a~~~~~~~-----------~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~--~~--~~~~~~li~~~~ 172 (354)
++.++.++|-+.+... +.+-..|.-+.+..++.-+ --....+++.+.. +| ...|+.|..-|.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 7788888777777776 2222334333333333221 1223333443332 22 235666666666
Q ss_pred hCCChhHHHHHHHHHH
Q 038758 173 LGGFREEVTNLLDEME 188 (354)
Q Consensus 173 ~~~~~~~a~~~~~~m~ 188 (354)
+.|++++|.++|++..
T Consensus 260 r~g~~ekarDvyeeai 275 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAI 275 (835)
T ss_pred HhhhhHHHHHHHHHHH
Confidence 7777777766666553
No 100
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.12 E-value=1.6e-05 Score=54.70 Aligned_cols=81 Identities=19% Similarity=0.158 Sum_probs=69.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCC-cCCcccHHHHHHHHhccC--------ChhhHHHHHHHHHHhccCCCcee
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGV-RPDHFVCPKVYKACSELK--------DYRVGKDVYDYMISIKFEGNACV 102 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~m~~~~~~~~~~~ 102 (354)
|-...|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. +.-....+|+.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 444566677777999999999999999999 999999999999887553 34467899999999999999999
Q ss_pred hhhHHHHHHh
Q 038758 103 KRPLLDLFIK 112 (354)
Q Consensus 103 ~~~li~~~~~ 112 (354)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 101
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.10 E-value=5.3e-05 Score=66.70 Aligned_cols=85 Identities=9% Similarity=0.003 Sum_probs=66.4
Q ss_pred HHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHH
Q 038758 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEIT 119 (354)
Q Consensus 40 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 119 (354)
+.+.|++.+|.-.|+...+.+ +-+...|-.|..+-...++-..|+..+.+..+.. +-|....-+|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 457788888888888888775 3466678888888888888888888888887764 55666777777788888888888
Q ss_pred HHHHHhh
Q 038758 120 SGLFEEM 126 (354)
Q Consensus 120 ~~~~~~~ 126 (354)
...++.-
T Consensus 373 l~~L~~W 379 (579)
T KOG1125|consen 373 LKMLDKW 379 (579)
T ss_pred HHHHHHH
Confidence 8887775
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.09 E-value=0.00011 Score=58.08 Aligned_cols=106 Identities=11% Similarity=0.107 Sum_probs=79.3
Q ss_pred CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCC-CcchHHHHHHHh-hhhcC--ccccchhhhHhhhhccccccc
Q 038758 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP-NTISLSGVLAAC-AQVKG--VKLGKAIHGYVLRHHIHLSTA 234 (354)
Q Consensus 159 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~t~~~ll~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~ 234 (354)
.|...|..+...|...|++++|...|+... .+.| +...+..+..++ ...|+ .++|..+++...+..
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al----~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d------ 140 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQAL----QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD------ 140 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC------
Confidence 466778888888999999999999998876 2334 345555555553 55565 478888888888776
Q ss_pred cchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhh
Q 038758 235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290 (354)
Q Consensus 235 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 290 (354)
+.+..++..+-..+.+.|++++|+..|+++.+.. +|+..-
T Consensus 141 ---------------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r 180 (198)
T PRK10370 141 ---------------ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNR 180 (198)
T ss_pred ---------------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccH
Confidence 3467788888899999999999999999998754 455543
No 103
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.00026 Score=58.96 Aligned_cols=301 Identities=12% Similarity=0.103 Sum_probs=160.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhh-HHHHHHh
Q 038758 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP-LLDLFIK 112 (354)
Q Consensus 34 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-li~~~~~ 112 (354)
..|++.--+.++-++-..+-+.+... ...--+|.+.....-.+++|++++...... .|+-...|. +.-+|.+
T Consensus 125 RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyK 197 (557)
T KOG3785|consen 125 RLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYK 197 (557)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHh
Confidence 34445555566655555554444321 122334444444445677777777776643 233333333 3334556
Q ss_pred cCChhHHHHHHHhh----ccccchhhHHHHHHHhc--C---------------------------------chhHHHHHh
Q 038758 113 CGRMEITSGLFEEM----DQDFLVNNSLIDFYAKC--R---------------------------------YLKVSHCKF 153 (354)
Q Consensus 113 ~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~--~---------------------------------~~~~a~~~~ 153 (354)
..-++-+.+++.-. +.++..-|....-..+. | +-+.|.+++
T Consensus 198 lDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVL 277 (557)
T KOG3785|consen 198 LDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVL 277 (557)
T ss_pred cchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhc
Confidence 66666555555443 22223333222222221 1 122222222
Q ss_pred ccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHH-hh----hhcCccccchhhhHhhhhc
Q 038758 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA-CA----QVKGVKLGKAIHGYVLRHH 228 (354)
Q Consensus 154 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~-~~----~~~~~~~a~~~~~~~~~~~ 228 (354)
-.+...=+..--.|+--|.+.++..+|..+.++.. -..|-......+..+ +. .....+-|.+.|+.+-..+
T Consensus 278 P~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa 353 (557)
T KOG3785|consen 278 PSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESA 353 (557)
T ss_pred hHHHhhChHhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccc
Confidence 11111111122234555788899999988877664 222322222222221 11 1223556777777777777
Q ss_pred cccccccchhHHHHHHh------------cccC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHH
Q 038758 229 IHLSTACGFVICSCSVF------------NQLS----TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292 (354)
Q Consensus 229 ~~~~~~~~~~~~a~~~~------------~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 292 (354)
.+.++-.|+..-|--+| +.+. ..|...| .+..+++..|++.+|+++|-++....+ .|..+|.
T Consensus 354 ~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~ 431 (557)
T KOG3785|consen 354 LECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEI-KNKILYK 431 (557)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHH
Confidence 77776555554444333 2222 2233333 356788889999999999988764433 3566776
Q ss_pred HHH-HHhhccCcccCc----cc---c-chhH-HHHHHHHHHhcCChhHHHHHhhcCCC--CCcccHH
Q 038758 293 SVL-PACLKLAALPQG----LG---T-GSFV-WNALIDMYGRCGAIQKSRKIFVLMPH--KNLVSWN 347 (354)
Q Consensus 293 ~li-~~~~~~~~~~~~----~~---~-~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~ 347 (354)
+++ ++|.+.+.++.+ ++ | +..+ ...+.+-|.+++.+--|-+.|+++.. |++..|.
T Consensus 432 s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWe 498 (557)
T KOG3785|consen 432 SMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWE 498 (557)
T ss_pred HHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccC
Confidence 654 577788888777 11 1 2222 23345678899999999999988776 7777664
No 104
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.07 E-value=8e-05 Score=64.75 Aligned_cols=120 Identities=9% Similarity=0.172 Sum_probs=70.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhc
Q 038758 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKC 113 (354)
Q Consensus 34 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 113 (354)
.+|++.+...++++.|.++|+++.+.. |+ ....+.+.+...++-.+|.+++++..+.. +.+......-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 345566666677777777777777654 33 34445666666666667777777666442 33444444444555566
Q ss_pred CChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCC--CC-hhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 114 GRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KD-LVSWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 114 g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
++.+.|..+.++. .+ |+ ..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 248 ~~~~lAL~iAk~a------------------------------v~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKA------------------------------VELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHH------------------------------HHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666665555543 32 33 3366666666666666666666666553
No 105
>PLN02789 farnesyltranstransferase
Probab=98.05 E-value=0.0012 Score=56.26 Aligned_cols=222 Identities=9% Similarity=-0.028 Sum_probs=146.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcc-cHHHHHHHHhccC-ChhhHHHHHHHHHHhccCCCceehhhHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHF-VCPKVYKACSELK-DYRVGKDVYDYMISIKFEGNACVKRPLLDL 109 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 109 (354)
+++.+-..+...++.++|+.+..+..+. .|+.. .|+.--..+...| +++++.+.++.+.+.+ +.+..+|+..-.+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 6677777788889999999999999875 44443 3555444555666 6799999999998875 5666677766666
Q ss_pred HHhcCCh--hHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhC---CCh
Q 038758 110 FIKCGRM--EITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALG---GFR 177 (354)
Q Consensus 110 ~~~~g~~--~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~---~~~ 177 (354)
+.+.|+. +++..+++++ +.+..+|+.....+.+.|+++++++.++++.+ .|...|+.....+.+. |..
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 6666653 6677777766 55677888888889999999999999998875 3556677666555544 223
Q ss_pred ----hHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhc----CccccchhhhHhhhhccccccccchhHHHHHHhcccC
Q 038758 178 ----EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK----GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLS 249 (354)
Q Consensus 178 ----~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 249 (354)
++.++...++. . --+-|...|+.+-..+...+ ...++........+.+
T Consensus 196 ~~~~e~el~y~~~aI--~-~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~--------------------- 251 (320)
T PLN02789 196 EAMRDSELKYTIDAI--L-ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD--------------------- 251 (320)
T ss_pred cccHHHHHHHHHHHH--H-hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc---------------------
Confidence 35566665554 1 12334566776666665522 2233444444333322
Q ss_pred CCCcchHHHHHHHHHhcC------------------CHHHHHHHHHHHH
Q 038758 250 TRDVVVWNSIISAFVRSG------------------QVVDALDLLRDVI 280 (354)
Q Consensus 250 ~~~~~~~~~li~~~~~~g------------------~~~~a~~~~~~m~ 280 (354)
..+......|+..|+... ..++|..++..+.
T Consensus 252 ~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 252 SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 335566777777777532 2356777777773
No 106
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.04 E-value=0.00046 Score=67.07 Aligned_cols=206 Identities=13% Similarity=0.034 Sum_probs=159.4
Q ss_pred chhhhhhHhhhhh----hHHHHHHHHHhcCChhHHHHHHHHHHhC-CCcCCcc---cHHHHHHHHhccCChhhHHHHHHH
Q 038758 19 CAFLGSQLLEVFC----NWTSMMGMYNVLGYYEEIVNLFYLMIDK-GVRPDHF---VCPKVYKACSELKDYRVGKDVYDY 90 (354)
Q Consensus 19 ~~~~~~~li~~~~----~y~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~ 90 (354)
+..-+..|+.+-. .|-.-|......++.++|.+++++.... +++-... .|.+++..-...|.-+...++|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 4555555554443 7888888899999999999999998754 2222222 466677666677788889999999
Q ss_pred HHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CC---h
Q 038758 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KD---L 161 (354)
Q Consensus 91 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~---~ 161 (354)
..+.. -...+|..|...|.+.+..++|-++++.| .....+|...+..+.+..+-+.|..++.+..+ |. +
T Consensus 1523 Acqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1523 ACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred HHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 88753 22346889999999999999999999999 56778999999999999999999999877654 32 2
Q ss_pred hhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcc
Q 038758 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI 229 (354)
Q Consensus 162 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 229 (354)
....-.+..-.+.|+.+.+..+|+... ...+--.-.|+..+..-.+.|+.+.++.+|+++...++
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll---~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLL---SAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHH---hhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 333444455567899999999999885 23333456799999999999999999999999999887
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.01 E-value=0.00015 Score=54.27 Aligned_cols=88 Identities=11% Similarity=-0.002 Sum_probs=56.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCCh
Q 038758 37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM 116 (354)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 116 (354)
-..+...|++++|...|++..... +.+...|..+..++...|++++|...|+...+.+ +.+...+..+..++...|++
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 445556677777777777666543 3345556666666666777777777777766554 45566666666666667777
Q ss_pred hHHHHHHHhh
Q 038758 117 EITSGLFEEM 126 (354)
Q Consensus 117 ~~a~~~~~~~ 126 (354)
++|...|++.
T Consensus 109 ~eAi~~~~~A 118 (144)
T PRK15359 109 GLAREAFQTA 118 (144)
T ss_pred HHHHHHHHHH
Confidence 7766666654
No 108
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.00 E-value=0.00025 Score=56.60 Aligned_cols=150 Identities=9% Similarity=-0.045 Sum_probs=107.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCC
Q 038758 36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR 115 (354)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 115 (354)
+-..+...|+-+....+....... ..-|....+.......+.|++..|...+.+..... ++|...|+.+--+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccC
Confidence 344555667777777666654432 12233345557777888888888888888877655 7788888888888888888
Q ss_pred hhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHH
Q 038758 116 MEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEM 187 (354)
Q Consensus 116 ~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m 187 (354)
.+.|..-|.+. ..+....|.|...|.-.|+.+.|+.++..... .|...-..+.......|+++.|.++...-
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 88888877776 55667778888888888888888888765542 36666777777778888888887776543
No 109
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.00 E-value=6.6e-05 Score=65.57 Aligned_cols=123 Identities=13% Similarity=0.140 Sum_probs=87.0
Q ss_pred CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchh
Q 038758 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFV 238 (354)
Q Consensus 159 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 238 (354)
-+......+++.+....+.+.+..++...+........-..|.+++++.|.+.|..+.+..++..=...|+
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGi--------- 134 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGI--------- 134 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhccc---------
Confidence 35556666677776667777777777777621223333345556778888888777777777777777777
Q ss_pred HHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhcc
Q 038758 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301 (354)
Q Consensus 239 ~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 301 (354)
-||..++|.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 135 -----------F~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 135 -----------FPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred -----------CCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7788888888888888888888888888877776666777777777766665
No 110
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.00 E-value=0.00065 Score=64.82 Aligned_cols=217 Identities=10% Similarity=0.053 Sum_probs=129.9
Q ss_pred cccHHHHHHHHhccCChhhHHHHHHHHHHhccCCC-ceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhc
Q 038758 65 HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN-ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKC 143 (354)
Q Consensus 65 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~ 143 (354)
...+..|+..+...+++++|.++.+...+. .|+ ...|-.+...+...++.+.+..+ .++......
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv------------~~l~~~~~~ 96 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL------------NLIDSFSQN 96 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh------------hhhhhcccc
Confidence 334667777777777777777777755443 333 33344444456666665555433 223333333
Q ss_pred CchhHHHHHhccCCC--CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhh
Q 038758 144 RYLKVSHCKFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221 (354)
Q Consensus 144 ~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 221 (354)
.++..++.+...+.. .+...+-.+..+|-+.|+.++|..+|+++. +.. +-|....|.+...++.. ++++|..++
T Consensus 97 ~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L--~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLV--KAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHH--hcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 333333333333332 234467778888889999999999999987 444 44567778888788877 888888776
Q ss_pred hHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhh-HHHHHHHhhc
Q 038758 222 GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT-IVSVLPACLK 300 (354)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~li~~~~~ 300 (354)
.+.. ..|...+++.++.++|.++... .|+... +..+++....
T Consensus 173 ~KAV-----------------------------------~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~ 215 (906)
T PRK14720 173 KKAI-----------------------------------YRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLG 215 (906)
T ss_pred HHHH-----------------------------------HHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHh
Confidence 5433 3355566777888888888755 333332 2223322222
Q ss_pred cCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 301 LAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 301 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
.-. +.--+.++.-+-+.|-..++++++..+++.+.+
T Consensus 216 ~~~----~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~ 251 (906)
T PRK14720 216 HRE----FTRLVGLLEDLYEPYKALEDWDEVIYILKKILE 251 (906)
T ss_pred hhc----cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Confidence 111 223344556666777777778888888877776
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.99 E-value=0.0011 Score=53.10 Aligned_cols=122 Identities=15% Similarity=-0.008 Sum_probs=75.8
Q ss_pred HHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCc
Q 038758 138 DFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGV 214 (354)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~ 214 (354)
..+.-.|+-+....+...... .|....+..+....+.|++..|...+++. ...-++|..+|+.+--+|.+.|++
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA---~~l~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKA---ARLAPTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHH---hccCCCChhhhhHHHHHHHHccCh
Confidence 344444444444444444321 23344555666777777777777777777 345556677777777777777777
Q ss_pred cccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038758 215 KLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283 (354)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 283 (354)
+.|+.-|.+..+... .+....|.+.-.+.-.|+.+.|..++......+
T Consensus 151 ~~Ar~ay~qAl~L~~---------------------~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 151 DEARRAYRQALELAP---------------------NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred hHHHHHHHHHHHhcc---------------------CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 777777766666542 244556666667777777777777777776543
No 112
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.0011 Score=56.37 Aligned_cols=250 Identities=11% Similarity=0.015 Sum_probs=162.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCccc-HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFV-CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLF 110 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 110 (354)
-...+-..+...|+.++|...|++..-. .|+..+ ...-.-.+.+.|+.+....+...+.... +-+..-|..-....
T Consensus 234 Ll~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l 310 (564)
T KOG1174|consen 234 LMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLL 310 (564)
T ss_pred HHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhh
Confidence 4556777888999999999999998754 343322 2222222357778887777777766442 33444455555556
Q ss_pred HhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHH
Q 038758 111 IKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNL 183 (354)
Q Consensus 111 ~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~ 183 (354)
-...+++.|+.+-++. +.+...+-.-...+...++.++|.=.|+.... | +...|.-|+..|...|++.+|.-+
T Consensus 311 ~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~ 390 (564)
T KOG1174|consen 311 YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANAL 390 (564)
T ss_pred hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHH
Confidence 6777888888887776 22333333334567778888888888875543 3 677889999999988988888766
Q ss_pred HHHHHhhhcCCCCCcchHHHHH-HHhh-hhcCccccchhhhHhhhhcccccc----------ccchhHHHHHHhcccC--
Q 038758 184 LDEMEMIQTDMQPNTISLSGVL-AACA-QVKGVKLGKAIHGYVLRHHIHLST----------ACGFVICSCSVFNQLS-- 249 (354)
Q Consensus 184 ~~~m~~~~~~~~p~~~t~~~ll-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~-- 249 (354)
-++.- .-++-+..+.+.+- ..|. ....-++|.++++.-++..+.-.. ..|...+++.++++..
T Consensus 391 An~~~---~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 391 ANWTI---RLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred HHHHH---HHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence 55442 12333444554442 2222 122335666666555544332211 5667777777777654
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHh
Q 038758 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289 (354)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 289 (354)
-||....+.|-..+...+.+.+|++.|...... .|+..
T Consensus 468 ~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--dP~~~ 505 (564)
T KOG1174|consen 468 FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--DPKSK 505 (564)
T ss_pred ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--Cccch
Confidence 689999999999999999999999999988754 45443
No 113
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.99 E-value=0.00012 Score=54.80 Aligned_cols=113 Identities=8% Similarity=-0.126 Sum_probs=84.1
Q ss_pred hccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccc
Q 038758 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS 232 (354)
Q Consensus 153 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 232 (354)
|++..+.++..+..+...+...|++++|...|+... .. -+.+...+..+-.++.+.|++++|...|+...+..
T Consensus 16 ~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al--~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~---- 88 (144)
T PRK15359 16 LKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLV--MA-QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD---- 88 (144)
T ss_pred HHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--Hc-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----
Confidence 333333344445566777888899999999998886 22 23356677777888888899999988888888765
Q ss_pred cccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhH
Q 038758 233 TACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI 291 (354)
Q Consensus 233 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 291 (354)
+.+...+..+..++.+.|+.++|+..|+...+. .|+...+
T Consensus 89 -----------------p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~~ 128 (144)
T PRK15359 89 -----------------ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADASW 128 (144)
T ss_pred -----------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHH
Confidence 457788888899999999999999999998854 5665443
No 114
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.96 E-value=0.002 Score=63.90 Aligned_cols=279 Identities=9% Similarity=-0.017 Sum_probs=161.5
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCc------CCcc--cHHHHHHHHhccCChhhHHHHHHHHHHhccCCC----ceehhhH
Q 038758 39 MYNVLGYYEEIVNLFYLMIDKGVR------PDHF--VCPKVYKACSELKDYRVGKDVYDYMISIKFEGN----ACVKRPL 106 (354)
Q Consensus 39 ~~~~~~~~~~a~~~~~~m~~~~~~------p~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l 106 (354)
.+...|+++++..++......--. +... ....+-..+...|+++.|...++...+.--..+ ....+.+
T Consensus 418 ~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~l 497 (903)
T PRK04841 418 LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVL 497 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 345678899998888877543111 1111 111222344578899999999988775311111 1234556
Q ss_pred HHHHHhcCChhHHHHHHHhhc--------c--ccchhhHHHHHHHhcCchhHHHHHhccCCC-------CC----hhhhH
Q 038758 107 LDLFIKCGRMEITSGLFEEMD--------Q--DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-------KD----LVSWN 165 (354)
Q Consensus 107 i~~~~~~g~~~~a~~~~~~~~--------~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~~----~~~~~ 165 (354)
...+...|++++|...+++.. + ...+...+...+...|++++|...+++... ++ ...+.
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 577 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLR 577 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 667788999999999988871 1 122344566678889999999888766532 11 12344
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC--cchHHHHHHHhhhhcCccccchhhhHhhhhccccc-----------
Q 038758 166 AMLAGYALGGFREEVTNLLDEMEMIQTDMQPN--TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLS----------- 232 (354)
Q Consensus 166 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----------- 232 (354)
.+...+...|++++|...+.+.........+. ...+..+.......|+.+.|...+...........
T Consensus 578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 657 (903)
T PRK04841 578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADK 657 (903)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHH
Confidence 44556677899999999988775211112222 23344445566778888888887777654311100
Q ss_pred ------cccchhHHHHHHhcccCCCCcc-------hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CcCCCHhhHHHHH
Q 038758 233 ------TACGFVICSCSVFNQLSTRDVV-------VWNSIISAFVRSGQVVDALDLLRDVIVA----NVKPNTVTIVSVL 295 (354)
Q Consensus 233 ------~~~~~~~~a~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~li 295 (354)
...|+.+.|...+.....+... .+..+..++...|+.++|...+++..+. |..++
T Consensus 658 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~-------- 729 (903)
T PRK04841 658 VRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSD-------- 729 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHH--------
Confidence 0234555555555444322110 1234455666777777777777776543 21111
Q ss_pred HHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 296 PACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
...+...+..++.+.|+.++|.+.+.+..+
T Consensus 730 ---------------~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 730 ---------------LNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred ---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 112344555666777777777777766554
No 115
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.00015 Score=57.89 Aligned_cols=173 Identities=10% Similarity=0.133 Sum_probs=123.9
Q ss_pred HHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCC-Chhh
Q 038758 85 KDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK-DLVS 163 (354)
Q Consensus 85 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~ 163 (354)
..+.+.+.......+......-...|++.|++++|++.... ..+......=+..+.+..+++-|++.+++|.+- +..|
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~-~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t 171 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL-GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDAT 171 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH
Confidence 34555555444344433444445678999999999999888 555556666667788889999999999999984 4556
Q ss_pred hHHHHHHHHh----CCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhH
Q 038758 164 WNAMLAGYAL----GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVI 239 (354)
Q Consensus 164 ~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 239 (354)
.+.|..++++ .+...+|.-+|++| .....|+..+.+-...++...|++++|+.+++..+....
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~---s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~---------- 238 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEEL---SEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA---------- 238 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHH---hcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC----------
Confidence 6666666554 46789999999999 566899999999999999999999999999988887653
Q ss_pred HHHHHhcccCCCCcchHHHHHHHHHhcCCH-HHHHHHHHHHHHc
Q 038758 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQV-VDALDLLRDVIVA 282 (354)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~ 282 (354)
.+..+...+|-.-...|.. +-..+...+++..
T Consensus 239 -----------~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 239 -----------KDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred -----------CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 3444554555444455554 4445566666543
No 116
>PLN02789 farnesyltranstransferase
Probab=97.92 E-value=0.0019 Score=55.04 Aligned_cols=202 Identities=10% Similarity=0.024 Sum_probs=130.2
Q ss_pred HHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcC-ChhHHHHHHHhh----ccccchhhHHHHHHHhcCch-
Q 038758 73 KACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG-RMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYL- 146 (354)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~- 146 (354)
..+...++.++|..+.+.+.+.. +-+..+|+.--.++...| ++++++..++++ +.+..+|+.....+.+.|+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchh
Confidence 34455678889999999988765 445556776666777777 679999999887 44555677665556666653
Q ss_pred -hHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcC---cc----
Q 038758 147 -KVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG---VK---- 215 (354)
Q Consensus 147 -~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~---~~---- 215 (354)
+++..+++++.+ .|..+|+...-.+.+.|+++++++.++++. +.+.. |...|+.....+.+.+. .+
T Consensus 124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I--~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 124 ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLL--EEDVR-NNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHCCC-chhHHHHHHHHHHhccccccccccHH
Confidence 667777777664 456678777778888899999999999997 44433 44556655544444322 21
Q ss_pred ccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhc----CCHHHHHHHHHHHHHcCcCCCHhhH
Q 038758 216 LGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS----GQVVDALDLLRDVIVANVKPNTVTI 291 (354)
Q Consensus 216 ~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~~~t~ 291 (354)
..........+.. +.|...|+.+...+... ++..+|.+.+.+..+.+ ..+....
T Consensus 201 ~el~y~~~aI~~~---------------------P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al 258 (320)
T PLN02789 201 SELKYTIDAILAN---------------------PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFAL 258 (320)
T ss_pred HHHHHHHHHHHhC---------------------CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHH
Confidence 1111111222111 45778898888888773 44566888888776533 2344555
Q ss_pred HHHHHHhhc
Q 038758 292 VSVLPACLK 300 (354)
Q Consensus 292 ~~li~~~~~ 300 (354)
..|+..|+.
T Consensus 259 ~~l~d~~~~ 267 (320)
T PLN02789 259 SDLLDLLCE 267 (320)
T ss_pred HHHHHHHHh
Confidence 555555553
No 117
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.00091 Score=58.70 Aligned_cols=82 Identities=11% Similarity=0.060 Sum_probs=61.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc---------ccc-chhHHHHHHHHHHhcCChh
Q 038758 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LGT-GSFVWNALIDMYGRCGAIQ 329 (354)
Q Consensus 260 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~---------~~~-~~~~~~~li~~~~~~g~~~ 329 (354)
-..+.+.|++..|+..|.++++.. +-|...|..--.+|.+.|.+..+ ..| ....|..=..++.-..+++
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~yd 443 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYD 443 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999998775 44667888888899999988777 222 3344444445555666888
Q ss_pred HHHHHhhcCCCCC
Q 038758 330 KSRKIFVLMPHKN 342 (354)
Q Consensus 330 ~A~~~~~~m~~~~ 342 (354)
+|.+.|++-.+.|
T Consensus 444 kAleay~eale~d 456 (539)
T KOG0548|consen 444 KALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHhcC
Confidence 8999998888755
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.91 E-value=0.0025 Score=55.50 Aligned_cols=143 Identities=14% Similarity=0.165 Sum_probs=104.1
Q ss_pred HHHhCCChhHHHHHHHHHHhhhcCCCCCc-chHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhccc
Q 038758 170 GYALGGFREEVTNLLDEMEMIQTDMQPNT-ISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQL 248 (354)
Q Consensus 170 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 248 (354)
.+...|++++|+..++.+. .. .|+. .-.......+.+.++.++|.+.++.+...
T Consensus 315 ~~~~~~~~d~A~~~l~~L~---~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--------------------- 369 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLI---AA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--------------------- 369 (484)
T ss_pred HHHHhcccchHHHHHHHHH---Hh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---------------------
Confidence 3446788888888888875 22 3444 44444555677778888888777777766
Q ss_pred CCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCC
Q 038758 249 STRD-VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGA 327 (354)
Q Consensus 249 ~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 327 (354)
.|+ ...+-.+-.+|.+.|++.+|+.++++..... +-|...|..|-++|...|+..++ -...-++|...|+
T Consensus 370 -~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a-------~~A~AE~~~~~G~ 440 (484)
T COG4783 370 -DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEA-------LLARAEGYALAGR 440 (484)
T ss_pred -CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHH-------HHHHHHHHHhCCC
Confidence 344 4556667788999999999999999887543 55778899999999999985543 4556778888999
Q ss_pred hhHHHHHhhcCCC---CCcccH
Q 038758 328 IQKSRKIFVLMPH---KNLVSW 346 (354)
Q Consensus 328 ~~~A~~~~~~m~~---~~~~~~ 346 (354)
++.|...+...++ +|..+|
T Consensus 441 ~~~A~~~l~~A~~~~~~~~~~~ 462 (484)
T COG4783 441 LEQAIIFLMRASQQVKLGFPDW 462 (484)
T ss_pred HHHHHHHHHHHHHhccCCcHHH
Confidence 9999988877765 555554
No 119
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.91 E-value=0.0013 Score=60.21 Aligned_cols=135 Identities=10% Similarity=0.149 Sum_probs=98.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCCh
Q 038758 37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM 116 (354)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 116 (354)
|.+-.....+.+|+.+++.+.... .-..-|..+.+-|...|+++.|.++|.+. ..++--|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 344556678888888888877653 23334777888899999999999998643 2356678899999999
Q ss_pred hHHHHHHHhhcc---ccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHH
Q 038758 117 EITSGLFEEMDQ---DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187 (354)
Q Consensus 117 ~~a~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 187 (354)
+.|.++-++... ....|-+-..-+-+.|++.+|++++-.+..|+. .|..|-+.|..++.+++.+.-
T Consensus 808 ~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 999999888722 334454555567778899999999888887764 356677777777777766644
No 120
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.89 E-value=0.0016 Score=54.23 Aligned_cols=186 Identities=9% Similarity=-0.000 Sum_probs=112.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHH---HHHhccCChhhHHHHHHHHHHhccCCCceeh-hhHHHHHH
Q 038758 36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVY---KACSELKDYRVGKDVYDYMISIKFEGNACVK-RPLLDLFI 111 (354)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~ 111 (354)
+-..+..+|++..|+.-|....+. |...|-++. ..|...|+-..|..-++...+. +||-..- -.-...+.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence 345566678888888888877654 333344433 4566777777777777766654 5654322 22334567
Q ss_pred hcCChhHHHHHHHhh---ccc--------------cchh--hHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHH
Q 038758 112 KCGRMEITSGLFEEM---DQD--------------FLVN--NSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLA 169 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~---~~~--------------~~~~--~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~ 169 (354)
+.|.++.|..=|+.+ .|+ ...| ...+..+.-.|+...|+.....+.+ .|...|..-..
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rak 197 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAK 197 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHH
Confidence 888888888888877 111 1111 1234455566777777777766653 46666777777
Q ss_pred HHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccc
Q 038758 170 GYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH 230 (354)
Q Consensus 170 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 230 (354)
+|...|++.+|+.=++... .--.-++.++--+-..+...|+.+.+.....+.++.+.+
T Consensus 198 c~i~~~e~k~AI~Dlk~as---kLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpd 255 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQAS---KLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPD 255 (504)
T ss_pred HHHhcCcHHHHHHHHHHHH---hccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcc
Confidence 8888888877766555543 112233444444455566677776666666666655443
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.86 E-value=0.0013 Score=62.82 Aligned_cols=140 Identities=9% Similarity=0.081 Sum_probs=86.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccH-HHHHHHHhccCChhhHHHHHHHHHHhccCCC-----------
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVC-PKVYKACSELKDYRVGKDVYDYMISIKFEGN----------- 99 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----------- 99 (354)
.|..|+..+...+++++|.++.+.-.+. .|+...+ -.+...+.+.++...+.-+ .+.+. +..+
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve~~~~ 107 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVEHICD 107 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHHHHHH
Confidence 7889999999999999999999976664 4555543 3333355566665555544 22221 1112
Q ss_pred --------ceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHH
Q 038758 100 --------ACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAM 167 (354)
Q Consensus 100 --------~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 167 (354)
...+..+..+|-+.|+.+++.++++++ +.+..+.|.+...|... ++++|++++.+...
T Consensus 108 ~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~--------- 177 (906)
T PRK14720 108 KILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY--------- 177 (906)
T ss_pred HHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH---------
Confidence 245556666666777777777777776 44566666677777766 77777666655322
Q ss_pred HHHHHhCCChhHHHHHHHHHH
Q 038758 168 LAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 168 i~~~~~~~~~~~a~~~~~~m~ 188 (354)
.+...+++.++.++|.++.
T Consensus 178 --~~i~~kq~~~~~e~W~k~~ 196 (906)
T PRK14720 178 --RFIKKKQYVGIEEIWSKLV 196 (906)
T ss_pred --HHHhhhcchHHHHHHHHHH
Confidence 2444455555555555553
No 122
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.86 E-value=0.00014 Score=53.82 Aligned_cols=105 Identities=10% Similarity=-0.026 Sum_probs=59.7
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchh
Q 038758 68 CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147 (354)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~ 147 (354)
...+...+...|++++|.+.++...+.+ +.+...+..+..++.+.|++++|...+++.
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~--------------------- 77 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALA--------------------- 77 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 4445555566667777777776666544 445555666666666666666666655543
Q ss_pred HHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHH
Q 038758 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGV 204 (354)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~l 204 (354)
-.+...+...+..+...+...|++++|.+.|+... . ..|+...+..+
T Consensus 78 ------~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~--~~p~~~~~~~~ 124 (135)
T TIGR02552 78 ------AALDPDDPRPYFHAAECLLALGEPESALKALDLAI--E--ICGENPEYSEL 124 (135)
T ss_pred ------HhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH--H--hccccchHHHH
Confidence 00111234455556666667777777777776665 2 33555444433
No 123
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.85 E-value=0.005 Score=56.59 Aligned_cols=218 Identities=10% Similarity=0.029 Sum_probs=141.5
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhH
Q 038758 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEI 118 (354)
Q Consensus 39 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 118 (354)
-|+..++++.|.+..++..+.+-.-+...|..|.-.+...+++..|.++.+.....- ..|......-+..=...++.++
T Consensus 487 q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~ 565 (799)
T KOG4162|consen 487 QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREE 565 (799)
T ss_pred HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHH
Confidence 366778999999999999888667778888888888888999999999888776431 1121111112222222444444
Q ss_pred HHHHHHhh-------------------------------------------------------------------ccc--
Q 038758 119 TSGLFEEM-------------------------------------------------------------------DQD-- 129 (354)
Q Consensus 119 a~~~~~~~-------------------------------------------------------------------~~~-- 129 (354)
+......+ .|+
T Consensus 566 ~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~ 645 (799)
T KOG4162|consen 566 ALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSL 645 (799)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCch
Confidence 44333322 000
Q ss_pred ----cchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC-cchH
Q 038758 130 ----FLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN-TISL 201 (354)
Q Consensus 130 ----~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~t~ 201 (354)
...|......+.+.++.++|...+.+... .....|......+...|.+++|.+.|.... -+.|+ ....
T Consensus 646 ~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al----~ldP~hv~s~ 721 (799)
T KOG4162|consen 646 WYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL----ALDPDHVPSM 721 (799)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH----hcCCCCcHHH
Confidence 11223344556666666666655554443 233445555556667777888888777665 34454 3456
Q ss_pred HHHHHHhhhhcCccccch--hhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 038758 202 SGVLAACAQVKGVKLGKA--IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279 (354)
Q Consensus 202 ~~ll~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 279 (354)
+++-..+.+.|+...+.. ++..+.+.+ +.+...|-.+-..+-+.|+.+.|-+.|...
T Consensus 722 ~Ala~~lle~G~~~la~~~~~L~dalr~d---------------------p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 722 TALAELLLELGSPRLAEKRSLLSDALRLD---------------------PLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHhhC---------------------CCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 666777777787776666 777766665 457788999999999999999999999887
Q ss_pred HHc
Q 038758 280 IVA 282 (354)
Q Consensus 280 ~~~ 282 (354)
.+.
T Consensus 781 ~qL 783 (799)
T KOG4162|consen 781 LQL 783 (799)
T ss_pred Hhh
Confidence 653
No 124
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.0011 Score=54.07 Aligned_cols=246 Identities=10% Similarity=0.055 Sum_probs=127.5
Q ss_pred CCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHH
Q 038758 60 GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDF 139 (354)
Q Consensus 60 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~ 139 (354)
|+.....-+.+++..+.+..++..|++++..-.++. +.+....+.|..+|....++..|-..++++....
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--------- 74 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--------- 74 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---------
Confidence 334444456677777777777777777777665553 3356666667777777777777776666651111
Q ss_pred HHhcCchhHHHHHhccCCCCChhhhHH-HHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHH--hhhhcCccc
Q 038758 140 YAKCRYLKVSHCKFSKIKQKDLVSWNA-MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA--CAQVKGVKL 216 (354)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~--~~~~~~~~~ 216 (354)
|...-|.. -...+.+.+.+.+|+++...|. .. |+...-..-+.+ ....+|+..
T Consensus 75 -------------------P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~--D~---~~L~~~~lqLqaAIkYse~Dl~g 130 (459)
T KOG4340|consen 75 -------------------PELEQYRLYQAQSLYKACIYADALRVAFLLL--DN---PALHSRVLQLQAAIKYSEGDLPG 130 (459)
T ss_pred -------------------hHHHHHHHHHHHHHHHhcccHHHHHHHHHhc--CC---HHHHHHHHHHHHHHhcccccCcc
Confidence 11111111 1122334444455555554443 11 111111111111 123344444
Q ss_pred cchhhhHhhhhcccccc--------ccchhHHHHHHhcccCC----CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Q 038758 217 GKAIHGYVLRHHIHLST--------ACGFVICSCSVFNQLST----RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV 284 (354)
Q Consensus 217 a~~~~~~~~~~~~~~~~--------~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 284 (354)
++.+.++....+-.... +.|+.++|.+-|+.... .....||.-+..| +.|+.+.|++...++.+.|+
T Consensus 131 ~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 131 SRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGI 209 (459)
T ss_pred hHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhh
Confidence 44444444321111110 55555555555554432 2456777766555 56889999999999999887
Q ss_pred CCCHhhHHHHHHHhhccCcccCccc------c-------chhHHHHHHHHHHhcCChhHHHHHhhcCCC-----CCcccH
Q 038758 285 KPNTVTIVSVLPACLKLAALPQGLG------T-------GSFVWNALIDMYGRCGAIQKSRKIFVLMPH-----KNLVSW 346 (354)
Q Consensus 285 ~p~~~t~~~li~~~~~~~~~~~~~~------~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~ 346 (354)
+--+.. .-|...+++. | =+..+|.-.-.+.+.|+++.|.+-+-+|+- .|++|.
T Consensus 210 r~HPEl---------gIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTL 280 (459)
T KOG4340|consen 210 RQHPEL---------GIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTL 280 (459)
T ss_pred hcCCcc---------CccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhh
Confidence 532211 0111111100 0 012233333445788999999999998874 566666
Q ss_pred HHh
Q 038758 347 NVM 349 (354)
Q Consensus 347 ~~l 349 (354)
..+
T Consensus 281 HN~ 283 (459)
T KOG4340|consen 281 HNQ 283 (459)
T ss_pred hHH
Confidence 544
No 125
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.83 E-value=0.00017 Score=53.31 Aligned_cols=91 Identities=7% Similarity=-0.110 Sum_probs=66.9
Q ss_pred HHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhc
Q 038758 136 LIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212 (354)
Q Consensus 136 li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~ 212 (354)
+...+...|++++|.+.|+...+ .+...|..+...+.+.|++++|...++... .. .+.+...+..+-..+...|
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~--~~-~p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAA--AL-DPDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hc-CCCChHHHHHHHHHHHHcC
Confidence 34444455555555555554432 356778888899999999999999999886 33 2445666777778899999
Q ss_pred CccccchhhhHhhhhcc
Q 038758 213 GVKLGKAIHGYVLRHHI 229 (354)
Q Consensus 213 ~~~~a~~~~~~~~~~~~ 229 (354)
+.+.|...++...+...
T Consensus 100 ~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 100 EPESALKALDLAIEICG 116 (135)
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 99999999999988765
No 126
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.82 E-value=0.0039 Score=55.05 Aligned_cols=139 Identities=12% Similarity=0.161 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCC-Ccch
Q 038758 177 REEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTR-DVVV 255 (354)
Q Consensus 177 ~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~ 255 (354)
.+.....+++... ...+.|+ -+|...++...+...++.|+.+|....+.+. .+ ++..
T Consensus 347 ~~~~~~~~~~ll~-~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r--------------------~~hhVfV 404 (656)
T KOG1914|consen 347 EKKVHEIYNKLLK-IEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKR--------------------TRHHVFV 404 (656)
T ss_pred hhhhHHHHHHHHh-hhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccC--------------------CcchhhH
Confidence 5667777777762 3344443 4577788888888888999999988888776 33 5666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhH-HHHHHHhhccCcccCc-----------ccc--chhHHHHHHHH
Q 038758 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI-VSVLPACLKLAALPQG-----------LGT--GSFVWNALIDM 321 (354)
Q Consensus 256 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~-~~li~~~~~~~~~~~~-----------~~~--~~~~~~~li~~ 321 (354)
++++|.-||. ++.+-|.++|+-=.+. -+|...| ...+.-+...++-..+ +.| ...+|..+++-
T Consensus 405 a~A~mEy~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 405 AAALMEYYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEY 481 (656)
T ss_pred HHHHHHHHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHH
Confidence 6777766664 5566677777553322 1232222 2334444444443332 122 34678888888
Q ss_pred HHhcCChhHHHHHhhcCCC
Q 038758 322 YGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 322 ~~~~g~~~~A~~~~~~m~~ 340 (354)
-..-|+...+.++-+++..
T Consensus 482 ES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 482 ESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHhcccHHHHHHHHHHHHH
Confidence 8888888888877766543
No 127
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.82 E-value=0.00016 Score=62.83 Aligned_cols=122 Identities=15% Similarity=0.160 Sum_probs=94.6
Q ss_pred HHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCc
Q 038758 135 SLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGV 214 (354)
Q Consensus 135 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~ 214 (354)
.|+..+...++++.|..+|+++.+.++...-.+...+...++-.+|.+++++.. . ..+-+......-.+.+.+.++.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL--~-~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEAL--K-ENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHH--H-hCCCCHHHHHHHHHHHHhcCCH
Confidence 455666677889999999999988776677778888888888889999998885 2 2223444455555567788888
Q ss_pred cccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038758 215 KLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280 (354)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 280 (354)
+.|..+.++..+.. +-+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 251 ~lAL~iAk~av~ls---------------------P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVELS---------------------PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhC---------------------chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88888887777763 2355699999999999999999999988875
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.82 E-value=0.002 Score=60.77 Aligned_cols=130 Identities=4% Similarity=-0.047 Sum_probs=77.1
Q ss_pred cCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CC-hhhhHHHH
Q 038758 96 FEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KD-LVSWNAML 168 (354)
Q Consensus 96 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li 168 (354)
...++..+..|..+..+.|+.++|+.+++.. +.+......+...+.+.+++++|....++... |+ ....+.+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 3445666666666666777777777776666 33444555566666666777777666666654 32 23344455
Q ss_pred HHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhc
Q 038758 169 AGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH 228 (354)
Q Consensus 169 ~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 228 (354)
.++.+.|++++|..+|++.. . ..+-+..++..+-.++-+.|+.++|...|+...+..
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~--~-~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLS--R-QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHhcchHHHHHHHHHHH--h-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 56666677777777776665 3 111224555566666666666666666666555543
No 129
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.023 Score=54.28 Aligned_cols=83 Identities=13% Similarity=0.158 Sum_probs=59.8
Q ss_pred CChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHh-----------ccCCCceehhhHHHHHHh
Q 038758 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI-----------KFEGNACVKRPLLDLFIK 112 (354)
Q Consensus 44 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----------~~~~~~~~~~~li~~~~~ 112 (354)
-.++.+++.++.|...+++.|..+...+..-|...=-.+...++|+..+.. ++.-|+.+.-..|.+-++
T Consensus 657 lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~k 736 (1666)
T KOG0985|consen 657 LSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACK 736 (1666)
T ss_pred cCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHh
Confidence 455666777777777777777777766666666655566666666666542 245677778888999999
Q ss_pred cCChhHHHHHHHhh
Q 038758 113 CGRMEITSGLFEEM 126 (354)
Q Consensus 113 ~g~~~~a~~~~~~~ 126 (354)
.|++.+++++.++-
T Consensus 737 t~QikEvERicres 750 (1666)
T KOG0985|consen 737 TGQIKEVERICRES 750 (1666)
T ss_pred hccHHHHHHHHhcc
Confidence 99999999888775
No 130
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.80 E-value=0.0002 Score=62.65 Aligned_cols=111 Identities=10% Similarity=0.035 Sum_probs=74.7
Q ss_pred CceehhhHHHHHHhcCChhHHHHHHHhhcc-------ccchhhHHHHHHHhcCchhHHHHHhccCCC----CChhhhHHH
Q 038758 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQ-------DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ----KDLVSWNAM 167 (354)
Q Consensus 99 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l 167 (354)
+......+++.+....+++.+..++.++.. ...+..+++..|.+.|..+++..++..=.+ ||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 333444444444444445555554444411 122333555555555555555555544333 899999999
Q ss_pred HHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhh
Q 038758 168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211 (354)
Q Consensus 168 i~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~ 211 (354)
|..+.+.|++..|.++..+|. ..+...+..|+...+.+|.+-
T Consensus 145 md~fl~~~~~~~A~~V~~~~~--lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMM--LQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHH--HhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999998 888888889999888888776
No 131
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.80 E-value=0.009 Score=53.95 Aligned_cols=89 Identities=10% Similarity=0.152 Sum_probs=61.4
Q ss_pred CCCcchHH--HHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHh-hHHHHHHHhhccCcccCc----------cccchhHHH
Q 038758 250 TRDVVVWN--SIISAFVRSGQVVDALDLLRDVIVANVKPNTV-TIVSVLPACLKLAALPQG----------LGTGSFVWN 316 (354)
Q Consensus 250 ~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~~----------~~~~~~~~~ 316 (354)
+|....|. .++..|-+.|+++.|+...+...++ .|+.. -|..-.+.+...|+++.+ -.+|..+-.
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INs 443 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINS 443 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHH
Confidence 34444444 4567788899999999999988854 67654 344445677778887776 344544444
Q ss_pred HHHHHHHhcCChhHHHHHhhcCCC
Q 038758 317 ALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 317 ~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
--.+...++.+.++|.++.....+
T Consensus 444 KcAKYmLrAn~i~eA~~~~skFTr 467 (700)
T KOG1156|consen 444 KCAKYMLRANEIEEAEEVLSKFTR 467 (700)
T ss_pred HHHHHHHHccccHHHHHHHHHhhh
Confidence 556667788888888888877665
No 132
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.80 E-value=0.00045 Score=51.80 Aligned_cols=92 Identities=11% Similarity=0.137 Sum_probs=50.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCc----ccHHHHHHHHhccCChhhHHHHHHHHHHhccCCC--ceehhh
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH----FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN--ACVKRP 105 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ 105 (354)
.|..++..+ ..++...+...++.+.+.. |+. ...-.+-..+...|++++|...|+...+....|+ ....-.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 344555554 3677777777777776653 222 1122233556667777777777777776542222 112333
Q ss_pred HHHHHHhcCChhHHHHHHHhh
Q 038758 106 LLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 106 li~~~~~~g~~~~a~~~~~~~ 126 (354)
|...+...|++++|...++..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~ 111 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQI 111 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhc
Confidence 455566666666666665543
No 133
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.003 Score=50.74 Aligned_cols=233 Identities=13% Similarity=0.071 Sum_probs=138.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCCh
Q 038758 37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM 116 (354)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 116 (354)
++-+.-.|++..++..-...... +-+...-.-+-++|...|.+.....- ++... .|.......+-......++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcchh
Confidence 34455567777766665554432 12333344455666677766643322 22222 23333333333333334444
Q ss_pred hHHHHHH-Hhh-ccc---c-chhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhh
Q 038758 117 EITSGLF-EEM-DQD---F-LVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190 (354)
Q Consensus 117 ~~a~~~~-~~~-~~~---~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 190 (354)
++-..-. +.+ .+. . .....-...|+..|++++|++............. =+..+.+..+.+-|.+.++.|+
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al--~VqI~lk~~r~d~A~~~lk~mq-- 164 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAAL--NVQILLKMHRFDLAEKELKKMQ-- 164 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHH--HHHHHHHHHHHHHHHHHHHHHH--
Confidence 3333332 333 111 1 1112233568899999999999998543333333 3555678889999999999997
Q ss_pred hcCCCCCcchHHHHHHHhhhh----cCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhc
Q 038758 191 QTDMQPNTISLSGVLAACAQV----KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266 (354)
Q Consensus 191 ~~~~~p~~~t~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 266 (354)
.- -+..|.+.+..++.+. +..+.|.-+|+++.+.- .|+..+.|-...++...
T Consensus 165 ~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~---------------------~~T~~llnG~Av~~l~~ 220 (299)
T KOG3081|consen 165 QI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT---------------------PPTPLLLNGQAVCHLQL 220 (299)
T ss_pred cc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc---------------------CCChHHHccHHHHHHHh
Confidence 21 3456777777776643 23555556665555432 56777788888888999
Q ss_pred CCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcc
Q 038758 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAAL 304 (354)
Q Consensus 267 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~ 304 (354)
|++++|..+++...+.. .-++.|...+|-+-...|..
T Consensus 221 ~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 221 GRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKD 257 (299)
T ss_pred cCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCC
Confidence 99999999999998764 33556666666666666654
No 134
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.77 E-value=0.005 Score=55.51 Aligned_cols=112 Identities=16% Similarity=0.036 Sum_probs=57.1
Q ss_pred cCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHH
Q 038758 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGL 122 (354)
Q Consensus 43 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 122 (354)
.|+.++|.+....-...+ .-+..+|+.+.-.+....++++|.++|....+.+ +-|...+.-+--.=++.|+++.....
T Consensus 54 lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred ccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence 366666666655554433 2244456665555555666666666666666554 44455555444444444555544443
Q ss_pred HHhh----ccccchhhHHHHHHHhcCchhHHHHHhccC
Q 038758 123 FEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKI 156 (354)
Q Consensus 123 ~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 156 (354)
..++ +.....|..+.-++.-.|+...|..+.+..
T Consensus 132 r~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef 169 (700)
T KOG1156|consen 132 RNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEF 169 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 222334444444444555555555554433
No 135
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.75 E-value=0.00038 Score=63.25 Aligned_cols=186 Identities=12% Similarity=0.079 Sum_probs=144.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|..+|-.|...|+-.+|..+..+-.++ +||...|..+.+.....--+++|.++.+..-.. .-..+.....
T Consensus 426 mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~ 496 (777)
T KOG1128|consen 426 MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLIL 496 (777)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccc
Confidence 8999999999999999999999988873 789999999988887777788888877765432 1112222233
Q ss_pred hcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CC-hhhhHHHHHHHHhCCChhHHHHHH
Q 038758 112 KCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KD-LVSWNAMLAGYALGGFREEVTNLL 184 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~ 184 (354)
..++++++.+.|+.- +....+|-.+.-+..+.++++.|.+.|..-.. || ...||.+-.+|.+.++..+|...+
T Consensus 497 ~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l 576 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKL 576 (777)
T ss_pred cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHH
Confidence 478888888888764 44566777788888899999999999877664 54 567999999999999999999999
Q ss_pred HHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcc
Q 038758 185 DEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI 229 (354)
Q Consensus 185 ~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 229 (354)
.+.. +.+ .-+...+...+....+.|.+++|.+.+.++.....
T Consensus 577 ~EAl--Kcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 577 KEAL--KCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHh--hcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 9987 666 55566666777777888999999888888776543
No 136
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.70 E-value=0.0014 Score=61.66 Aligned_cols=133 Identities=8% Similarity=-0.051 Sum_probs=78.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcc-cHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHF-VCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLF 110 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 110 (354)
.+-.|-....+.|.+++|..+++...+. .|+.. ....+...+.+.+++++|....+...+.. +-+......+..++
T Consensus 88 ~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l 164 (694)
T PRK15179 88 FQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSW 164 (694)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHH
Confidence 5555666666666666666666666654 34433 34455556666666666666666666553 33444555666666
Q ss_pred HhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHH
Q 038758 111 IKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAM 167 (354)
Q Consensus 111 ~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l 167 (354)
.+.|++++|.++|++. +.+..++..+...+-..|+.++|...|++... +.+..|+..
T Consensus 165 ~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 165 DEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 6666666666666666 12244555566666666666666666665542 344444433
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.70 E-value=0.0033 Score=54.79 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=46.9
Q ss_pred cCChhHHHHHHHHHHhCCCcCCcccH-HHHHHHHhccCChhhHHHHHHHHHHhccCCC-ceehhhHHHHHHhcCChhHHH
Q 038758 43 LGYYEEIVNLFYLMIDKGVRPDHFVC-PKVYKACSELKDYRVGKDVYDYMISIKFEGN-ACVKRPLLDLFIKCGRMEITS 120 (354)
Q Consensus 43 ~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~ 120 (354)
.|++++|+..+..+... .|+...| ......+.+.++.++|.+.++.+... .|+ ....-.+..+|.+.|++.+|.
T Consensus 319 ~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 319 AGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHH
Confidence 34555555555554433 2333322 22333444555555555555554443 222 333334444555555555555
Q ss_pred HHHHhh----ccccchhhHHHHHHHhcCchhHH
Q 038758 121 GLFEEM----DQDFLVNNSLIDFYAKCRYLKVS 149 (354)
Q Consensus 121 ~~~~~~----~~~~~~~~~li~~~~~~~~~~~a 149 (354)
+++++. +.+...|..|..+|...|+..++
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH
Confidence 555444 33444555555555555544433
No 138
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.70 E-value=0.00014 Score=56.51 Aligned_cols=85 Identities=16% Similarity=0.146 Sum_probs=72.0
Q ss_pred hHHHHHHHHH-----hcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccC----------------ChhhHHHHHHH
Q 038758 32 NWTSMMGMYN-----VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK----------------DYRVGKDVYDY 90 (354)
Q Consensus 32 ~y~~li~~~~-----~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------------~~~~a~~~~~~ 90 (354)
+|..++..|. +.|..+=....++.|.+-|+.-|..+|+.||+.+=+.. +-+-|.+++++
T Consensus 49 ~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~q 128 (228)
T PF06239_consen 49 TFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQ 128 (228)
T ss_pred HHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHH
Confidence 6666666666 44888889999999999999999999999999875422 34568999999
Q ss_pred HHHhccCCCceehhhHHHHHHhcCCh
Q 038758 91 MISIKFEGNACVKRPLLDLFIKCGRM 116 (354)
Q Consensus 91 m~~~~~~~~~~~~~~li~~~~~~g~~ 116 (354)
|...|+-||..++..|++.+++.+..
T Consensus 129 ME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 129 MENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHcCCCCcHHHHHHHHHHhccccHH
Confidence 99999999999999999999887754
No 139
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.68 E-value=0.00036 Score=47.37 Aligned_cols=92 Identities=17% Similarity=0.228 Sum_probs=69.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHh
Q 038758 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIK 112 (354)
Q Consensus 33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 112 (354)
|..+...+...|++++|...+++..+.. +.+...+..+...+...++++.|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4556677788899999999999987753 2233556677777888899999999998887764 4445677778888888
Q ss_pred cCChhHHHHHHHhh
Q 038758 113 CGRMEITSGLFEEM 126 (354)
Q Consensus 113 ~g~~~~a~~~~~~~ 126 (354)
.|+.+.|...+.+.
T Consensus 81 ~~~~~~a~~~~~~~ 94 (100)
T cd00189 81 LGKYEEALEAYEKA 94 (100)
T ss_pred HHhHHHHHHHHHHH
Confidence 88888888777653
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.65 E-value=0.0013 Score=49.29 Aligned_cols=118 Identities=11% Similarity=0.051 Sum_probs=81.1
Q ss_pred cHHHHHHHHhccCChhhHHHHHHHHHHhccCCC---ceehhhHHHHHHhcCChhHHHHHHHhhc---ccc----chhhHH
Q 038758 67 VCPKVYKACSELKDYRVGKDVYDYMISIKFEGN---ACVKRPLLDLFIKCGRMEITSGLFEEMD---QDF----LVNNSL 136 (354)
Q Consensus 67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~----~~~~~l 136 (354)
.|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+... ++. ...-.|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 355555555 4778888888888888763 333 2233345577888899999999999882 222 123346
Q ss_pred HHHHHhcCchhHHHHHhccCCCC--ChhhhHHHHHHHHhCCChhHHHHHHHH
Q 038758 137 IDFYAKCRYLKVSHCKFSKIKQK--DLVSWNAMLAGYALGGFREEVTNLLDE 186 (354)
Q Consensus 137 i~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~ 186 (354)
...+...|++++|...++....+ ....+......+.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67778888888888888776542 234455666778888888888888875
No 141
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.61 E-value=0.00074 Score=52.68 Aligned_cols=114 Identities=15% Similarity=0.144 Sum_probs=81.7
Q ss_pred HHHhccC--CCCChhhhHHHHHHHHhC-----CChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhh
Q 038758 150 HCKFSKI--KQKDLVSWNAMLAGYALG-----GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHG 222 (354)
Q Consensus 150 ~~~~~~~--~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 222 (354)
...|+.. ...|-.+|..++..|.+. |..+=....++.|. +-|+.-|..+|+.||+.+=+. .+-
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~--efgv~kDL~~Y~~LLDvFPKg-~fv------- 103 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMD--EFGVEKDLEVYKALLDVFPKG-KFV------- 103 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHH--HcCCcccHHHHHHHHHhCCCC-Ccc-------
Confidence 3445554 347888898899888754 66777788889998 899999999999999887642 211
Q ss_pred HhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccC
Q 038758 223 YVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302 (354)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~ 302 (354)
|.. .+-++...| -.+.+-|++++++|...|+.||..|+..|++.+++.+
T Consensus 104 ----------------------------p~n-~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 104 ----------------------------PRN-FFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred ----------------------------ccc-HHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 111 111111111 2345678999999999999999999999999988877
Q ss_pred cc
Q 038758 303 AL 304 (354)
Q Consensus 303 ~~ 304 (354)
..
T Consensus 153 ~p 154 (228)
T PF06239_consen 153 HP 154 (228)
T ss_pred HH
Confidence 53
No 142
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.037 Score=49.68 Aligned_cols=89 Identities=12% Similarity=0.189 Sum_probs=59.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCC---------------------------cCCcccHHHHHHH---HhccCChhhHHHH
Q 038758 38 GMYNVLGYYEEIVNLFYLMIDKGV---------------------------RPDHFVCPKVYKA---CSELKDYRVGKDV 87 (354)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~~---------------------------~p~~~~~~~ll~~---~~~~~~~~~a~~~ 87 (354)
..+.+.|++++|+++|+++.+++. .....+|..+... +...|++.+|+++
T Consensus 118 QvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~el 197 (652)
T KOG2376|consen 118 QVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIEL 197 (652)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHH
Confidence 456788999999999999855432 1113355555543 4478899999999
Q ss_pred HHHHHHhccC-------------CCc-eehhhHHHHHHhcCChhHHHHHHHhh
Q 038758 88 YDYMISIKFE-------------GNA-CVKRPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 88 ~~~m~~~~~~-------------~~~-~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
++...+.+.. -.. ..--.|.-++...|+.++|.+++..+
T Consensus 198 L~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 198 LEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred HHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 9988433210 011 12234555677889999999988887
No 143
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.59 E-value=0.041 Score=47.88 Aligned_cols=78 Identities=10% Similarity=0.010 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHcCcCCCHhh----HHHHHH--HhhccCcccCc---------cccchhHHHHHHHHHHhcCChhHHHHH
Q 038758 270 VDALDLLRDVIVANVKPNTVT----IVSVLP--ACLKLAALPQG---------LGTGSFVWNALIDMYGRCGAIQKSRKI 334 (354)
Q Consensus 270 ~~a~~~~~~m~~~g~~p~~~t----~~~li~--~~~~~~~~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~ 334 (354)
.+-..+-+-+.+.|+.|-... -+.|-. -+...|++.++ +.|++.+|.-+.-.+....++++|..+
T Consensus 438 ~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~ 517 (549)
T PF07079_consen 438 PRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEY 517 (549)
T ss_pred HHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 333344444455666654332 222222 23445666654 899999999999999999999999999
Q ss_pred hhcCCCCCcccHHH
Q 038758 335 FVLMPHKNLVSWNV 348 (354)
Q Consensus 335 ~~~m~~~~~~~~~~ 348 (354)
+..++ ||..+|++
T Consensus 518 l~~LP-~n~~~~ds 530 (549)
T PF07079_consen 518 LQKLP-PNERMRDS 530 (549)
T ss_pred HHhCC-CchhhHHH
Confidence 99998 46666654
No 144
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.59 E-value=0.0013 Score=50.63 Aligned_cols=90 Identities=10% Similarity=0.051 Sum_probs=57.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcC--CcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRP--DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDL 109 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 109 (354)
.|..+...+...|++++|...|++.......| ...++..+...+...|++++|.+.++...+.. +....++..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 56666677777788888888888876553222 12356677777778888888888887777542 3333445555555
Q ss_pred HH-------hcCChhHHHHH
Q 038758 110 FI-------KCGRMEITSGL 122 (354)
Q Consensus 110 ~~-------~~g~~~~a~~~ 122 (354)
+. ..|+++.|...
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~ 135 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAW 135 (168)
T ss_pred HHHhhHHHHHcccHHHHHHH
Confidence 55 45555554443
No 145
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.53 E-value=0.001 Score=55.89 Aligned_cols=145 Identities=18% Similarity=0.172 Sum_probs=89.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHH-HhccCChhhHHHHHHHHHHhccCCCceehhhHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKA-CSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLF 110 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 110 (354)
+|-.+|+...+.+..+.|..+|++.++.+ ..+...|...... +...++.+.|.++|+...+. ++.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 57777888888888888888888887543 2233333333332 23345666788888887765 466667777777777
Q ss_pred HhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCC-C-ChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 111 IKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-K-DLVSWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 111 ~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
.+.|+.+.|..+|++. ...+.. . ....|...+.-=.+.|+.+.+.++.+.+.
T Consensus 81 ~~~~d~~~aR~lfer~--------------------------i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 81 IKLNDINNARALFERA--------------------------ISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp HHTT-HHHHHHHHHHH--------------------------CCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHH--------------------------HHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7778887777777764 111111 1 23467777777778888888888888776
Q ss_pred hhhcCCCCCcchHHHHHHHh
Q 038758 189 MIQTDMQPNTISLSGVLAAC 208 (354)
Q Consensus 189 ~~~~~~~p~~~t~~~ll~~~ 208 (354)
. ..|+...+..+++-|
T Consensus 135 --~--~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 135 --E--LFPEDNSLELFSDRY 150 (280)
T ss_dssp --H--HTTTS-HHHHHHCCT
T ss_pred --H--HhhhhhHHHHHHHHh
Confidence 2 344444454444433
No 146
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.51 E-value=0.00097 Score=55.98 Aligned_cols=82 Identities=12% Similarity=0.105 Sum_probs=62.9
Q ss_pred cCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCC---ceehhhHHHHHHhcCChhHH
Q 038758 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN---ACVKRPLLDLFIKCGRMEIT 119 (354)
Q Consensus 43 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a 119 (354)
.++.+.|..+|+...+. ...+...|..-+..+...++.+.|..+|+..... +.++ ...|...+..=.+.|+.+.+
T Consensus 49 ~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v 126 (280)
T PF05843_consen 49 NKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESV 126 (280)
T ss_dssp CS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHH
T ss_pred CCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHH
Confidence 57777799999998876 4567777888889999999999999999998865 2322 24788888888888999988
Q ss_pred HHHHHhh
Q 038758 120 SGLFEEM 126 (354)
Q Consensus 120 ~~~~~~~ 126 (354)
.++.+++
T Consensus 127 ~~v~~R~ 133 (280)
T PF05843_consen 127 RKVEKRA 133 (280)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888776
No 147
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.51 E-value=0.079 Score=49.15 Aligned_cols=77 Identities=14% Similarity=0.263 Sum_probs=54.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCcCCCH-hhHHHHHHHhhccCcccCc-----------ccc-chhHHHHHHHHHHhcCCh
Q 038758 262 AFVRSGQVVDALDLLRDVIVANVKPNT-VTIVSVLPACLKLAALPQG-----------LGT-GSFVWNALIDMYGRCGAI 328 (354)
Q Consensus 262 ~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~~-----------~~~-~~~~~~~li~~~~~~g~~ 328 (354)
.+...|+.++|.+.|..... +.|+. .....+-..+.+.|+...+ +.| +...|..+...+-+.|+.
T Consensus 693 ~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 693 LLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred HHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccch
Confidence 34455667777777766653 34554 3556677777788865554 344 678899999999999999
Q ss_pred hHHHHHhhcCCC
Q 038758 329 QKSRKIFVLMPH 340 (354)
Q Consensus 329 ~~A~~~~~~m~~ 340 (354)
+.|-+.|....+
T Consensus 771 ~~Aaecf~aa~q 782 (799)
T KOG4162|consen 771 KQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHHHh
Confidence 999999886554
No 148
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.51 E-value=0.014 Score=58.03 Aligned_cols=233 Identities=9% Similarity=0.046 Sum_probs=137.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCc-----CCcccHHHHHHHHhccCChhhHHHHHHHHHHh----ccCC---C
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVR-----PDHFVCPKVYKACSELKDYRVGKDVYDYMISI----KFEG---N 99 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~---~ 99 (354)
..+.+-..+...|++++|...+++.....-. +....+..+...+...|+++.|...+++.... +... .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 3455666677888999888888887643111 11123445556677888898888888776643 2111 1
Q ss_pred ceehhhHHHHHHhcCChhHHHHHHHhh-------cc--ccchhhHHHHHHHhcCchhHHHHHhccCCC----CC-hhhh-
Q 038758 100 ACVKRPLLDLFIKCGRMEITSGLFEEM-------DQ--DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ----KD-LVSW- 164 (354)
Q Consensus 100 ~~~~~~li~~~~~~g~~~~a~~~~~~~-------~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~-~~~~- 164 (354)
...+..+...+...|++++|...+++. .+ ....+..+...+...|+.++|...+++... .. ...+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 122344555667778998888887775 11 122333455567778888888877766532 11 1111
Q ss_pred ----HHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcc---hHHHHHHHhhhhcCccccchhhhHhhhhccccccccch
Q 038758 165 ----NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI---SLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGF 237 (354)
Q Consensus 165 ----~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 237 (354)
...+..+...|+.+.|.+++.... ......... ....+..++...|+.++|...+.........
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~--~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~------- 723 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAP--KPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARS------- 723 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcC--CCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------
Confidence 112234455788888888877664 221111110 1234455566778888887777766554210
Q ss_pred hHHHHHHhcccCCC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038758 238 VICSCSVFNQLSTR--DVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283 (354)
Q Consensus 238 ~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 283 (354)
...+ ...+...+-.++.+.|+.++|...+.+..+..
T Consensus 724 ----------~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 724 ----------LRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred ----------hCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 0011 12345556677889999999999999987653
No 149
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.50 E-value=0.0001 Score=49.43 Aligned_cols=81 Identities=14% Similarity=0.245 Sum_probs=48.3
Q ss_pred cCChhHHHHHHHHHHhCCCc-CCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHH
Q 038758 43 LGYYEEIVNLFYLMIDKGVR-PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSG 121 (354)
Q Consensus 43 ~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 121 (354)
.|+++.|+.+++++.+.... |+...+..+...+.+.|++++|..+++. .+.+ +.+....-.+..++.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46777777777777765431 2333444466777777777777777776 3332 2223344455667777777777777
Q ss_pred HHHh
Q 038758 122 LFEE 125 (354)
Q Consensus 122 ~~~~ 125 (354)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 150
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.47 E-value=0.023 Score=53.40 Aligned_cols=217 Identities=10% Similarity=0.107 Sum_probs=135.3
Q ss_pred HhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHh--ccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhH
Q 038758 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACS--ELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEI 118 (354)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 118 (354)
..++++.+|+.-...+..+ -||.. |..++.++. +.|+.++|..+++.....+ .-|..|...+-.+|...|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhH
Confidence 3568899999998888765 35544 666666654 8889999998888877555 3378889999999999999999
Q ss_pred HHHHHHhh---ccccchhhHHHHHHHhcCchh----HHHHHhccCCCCChhhhHHHHHHHHhCC-Ch---------hHHH
Q 038758 119 TSGLFEEM---DQDFLVNNSLIDFYAKCRYLK----VSHCKFSKIKQKDLVSWNAMLAGYALGG-FR---------EEVT 181 (354)
Q Consensus 119 a~~~~~~~---~~~~~~~~~li~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~li~~~~~~~-~~---------~~a~ 181 (354)
|..+|++. .|+......+..+|.+.+++. .|.+++...++.--.-|+ +++...+.. .. .-|.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs-V~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS-VISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH-HHHHHHHhccCCcccccchhHHHHH
Confidence 99999998 555666677888888887765 456667766543333443 344333321 11 2344
Q ss_pred HHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhH-hhhhccccccccchhHHHHHHhcccCCCCcchHHHHH
Q 038758 182 NLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY-VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSII 260 (354)
Q Consensus 182 ~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li 260 (354)
+.++.+.+ +.|---+..-...-+..+...|..++|.+++.. ..+. ....+...-+--+
T Consensus 175 ~m~~~~l~-~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~--------------------l~~~~~~l~~~~~ 233 (932)
T KOG2053|consen 175 KMVQKLLE-KKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK--------------------LTSANLYLENKKL 233 (932)
T ss_pred HHHHHHhc-cCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh--------------------ccccchHHHHHHH
Confidence 45555542 222111111111222223344555555555421 1111 1133344444567
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 038758 261 SAFVRSGQVVDALDLLRDVIVAN 283 (354)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~m~~~g 283 (354)
..+...+++.+..++-.++.+.|
T Consensus 234 dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 234 DLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHhcChHHHHHHHHHHHHhC
Confidence 77788888888888888888765
No 151
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.45 E-value=0.0043 Score=57.62 Aligned_cols=276 Identities=11% Similarity=0.061 Sum_probs=165.2
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHh-cc--------CCCceehhhHHHH
Q 038758 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI-KF--------EGNACVKRPLLDL 109 (354)
Q Consensus 39 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~--------~~~~~~~~~li~~ 109 (354)
.|.--|+.+.|.+-++..+. ...|..+.+.|.+.++++-|.-++..|... |. .|+ .+-....-.
T Consensus 737 fyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 35667999999988877764 346999999999999999999888888743 21 121 222233334
Q ss_pred HHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCC-ChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 110 FIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK-DLVSWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 110 ~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
-...|.+++|+.+|.+.+ -|..|=+.|-..|.+++|.++-+.-..- =..||..-...+-..+|.+.|++.|+...
T Consensus 810 AieLgMlEeA~~lYr~ck----R~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCK----RYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAG 885 (1416)
T ss_pred HHHHhhHHHHHHHHHHHH----HHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 567799999999998863 3556667788889999999988764431 23456666666667788888888887552
Q ss_pred hhhcCC-------------------CCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc--ccchhHHHHHHhcc
Q 038758 189 MIQTDM-------------------QPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST--ACGFVICSCSVFNQ 247 (354)
Q Consensus 189 ~~~~~~-------------------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~a~~~~~~ 247 (354)
.+.. ..|...|..--..+-..|+.+.|..+|......-..... -.|+.++|-++-++
T Consensus 886 --~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~e 963 (1416)
T KOG3617|consen 886 --VHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEE 963 (1416)
T ss_pred --ChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHh
Confidence 1110 112233333333344445555555555444332221111 34555555555444
Q ss_pred cCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc----cccchhHHHHHHHHHH
Q 038758 248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----LGTGSFVWNALIDMYG 323 (354)
Q Consensus 248 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~----~~~~~~~~~~li~~~~ 323 (354)
..|....-.+.+.|-..|++.+|...|-+.. +|...|+.|-..+.-++- ......-.-...+.|-
T Consensus 964 --sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyE 1032 (1416)
T KOG3617|consen 964 --SGDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYE 1032 (1416)
T ss_pred --cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHH
Confidence 2344455566777778888888888877664 444555544333322221 1111111334455566
Q ss_pred hcC-ChhHHHHHhhcC
Q 038758 324 RCG-AIQKSRKIFVLM 338 (354)
Q Consensus 324 ~~g-~~~~A~~~~~~m 338 (354)
.+| ..++|..++.+.
T Consensus 1033 e~g~~~~~AVmLYHkA 1048 (1416)
T KOG3617|consen 1033 ELGGYAHKAVMLYHKA 1048 (1416)
T ss_pred HcchhhhHHHHHHHhh
Confidence 666 777787777643
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.40 E-value=0.0026 Score=45.56 Aligned_cols=94 Identities=10% Similarity=-0.005 Sum_probs=67.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCc--CCcccHHHHHHHHhccCChhhHHHHHHHHHHhcc--CCCceehhhHHH
Q 038758 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVR--PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKF--EGNACVKRPLLD 108 (354)
Q Consensus 33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~ 108 (354)
+-.+...+.+.|++++|.+.|+.+.+.... .....+..+...+.+.|+++.|.+.++.+.+... +.....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 445666778889999999999888765311 1123566677888888999999999998876531 112445677778
Q ss_pred HHHhcCChhHHHHHHHhh
Q 038758 109 LFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 109 ~~~~~g~~~~a~~~~~~~ 126 (354)
++.+.|+.++|.+.++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHhCChHHHHHHHHHH
Confidence 888888888888888776
No 153
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.39 E-value=0.0022 Score=49.60 Aligned_cols=88 Identities=8% Similarity=0.066 Sum_probs=52.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCC--cccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPD--HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDL 109 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 109 (354)
.|..+-..+...|++++|...|++..+.+..+. ...+..+...+.+.|+++.|...++...+.. +-+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 455566666777777777777777765432222 2356666666777777777777777766542 2234445555556
Q ss_pred HHhcCChhHHH
Q 038758 110 FIKCGRMEITS 120 (354)
Q Consensus 110 ~~~~g~~~~a~ 120 (354)
+...|+...+.
T Consensus 116 ~~~~g~~~~a~ 126 (172)
T PRK02603 116 YHKRGEKAEEA 126 (172)
T ss_pred HHHcCChHhHh
Confidence 65555544433
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.33 E-value=0.0062 Score=43.55 Aligned_cols=101 Identities=8% Similarity=-0.107 Sum_probs=66.0
Q ss_pred hhHHHHHHHHhCCChhHHHHHHHHHHhhhcC--CCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHH
Q 038758 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTD--MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVIC 240 (354)
Q Consensus 163 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 240 (354)
++..+...+.+.|++++|.+.|+.+. ... -......+..+..++.+.|+++.|...++.+.......
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--------- 72 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFL--KKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS--------- 72 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH--HHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC---------
Confidence 34556666777788888888887775 221 11112345556667777777777877777776653210
Q ss_pred HHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038758 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283 (354)
Q Consensus 241 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 283 (354)
......+..+...+.+.|+.++|...++++.+..
T Consensus 73 ---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 73 ---------PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred ---------CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 1123456667778888899999999999888763
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.31 E-value=0.001 Score=44.99 Aligned_cols=93 Identities=16% Similarity=0.169 Sum_probs=52.3
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchh
Q 038758 68 CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147 (354)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~ 147 (354)
+..+...+...|+++.|.++++...+.. +.+...+..+..++...|+++.|.+.|++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-------------------- 61 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKAL-------------------- 61 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 3444555566677777777777666543 2233445555556666666666665555430
Q ss_pred HHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
.+...+..++..+...+...|++++|...+....
T Consensus 62 -------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 62 -------ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred -------hCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 0111233455566666667777777777776654
No 156
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.26 E-value=0.0038 Score=52.56 Aligned_cols=131 Identities=13% Similarity=0.153 Sum_probs=64.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCc-----ccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH-----FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPL 106 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 106 (354)
.|+..-..|...|++++|.+.|.+.-....+.+. ..|......+ +..+++.|.+.++...
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~-------------- 101 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAI-------------- 101 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHH--------------
Confidence 6777777888888888888888776443211111 1122222222 3335555555555544
Q ss_pred HHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhc-CchhHHHHHhccCCC-------C--ChhhhHHHHHHHHhCCC
Q 038758 107 LDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKC-RYLKVSHCKFSKIKQ-------K--DLVSWNAMLAGYALGGF 176 (354)
Q Consensus 107 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~-------~--~~~~~~~li~~~~~~~~ 176 (354)
..|...|++..|-+.+.+ +...|-.. |++++|.+.|++... + -...+..+...+.+.|+
T Consensus 102 -~~y~~~G~~~~aA~~~~~----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~ 170 (282)
T PF14938_consen 102 -EIYREAGRFSQAAKCLKE----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR 170 (282)
T ss_dssp -HHHHHCT-HHHHHHHHHH----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred -HHHHhcCcHHHHHHHHHH----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Confidence 334444444444433322 33344444 445544444443321 1 12234455556666677
Q ss_pred hhHHHHHHHHHH
Q 038758 177 REEVTNLLDEME 188 (354)
Q Consensus 177 ~~~a~~~~~~m~ 188 (354)
+++|.++|++..
T Consensus 171 y~~A~~~~e~~~ 182 (282)
T PF14938_consen 171 YEEAIEIYEEVA 182 (282)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776664
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.24 E-value=0.00057 Score=45.76 Aligned_cols=47 Identities=15% Similarity=0.290 Sum_probs=23.1
Q ss_pred CChhhHHHHHHHHHHhccC-CCceehhhHHHHHHhcCChhHHHHHHHh
Q 038758 79 KDYRVGKDVYDYMISIKFE-GNACVKRPLLDLFIKCGRMEITSGLFEE 125 (354)
Q Consensus 79 ~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~ 125 (354)
|+++.|..+++.+.+.... ++...+..+..+|.+.|++++|..++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4556666666666554321 1233333355555555555555555543
No 158
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.016 Score=46.39 Aligned_cols=181 Identities=13% Similarity=0.130 Sum_probs=121.6
Q ss_pred hcCChhHHHHHHHHHHhC---C-CcCCccc-HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCCh
Q 038758 42 VLGYYEEIVNLFYLMIDK---G-VRPDHFV-CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM 116 (354)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~---~-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 116 (354)
...+.++.++++.++... | ..++..+ |..++-+....|+.+.|..+++.+.+.- +-+..+-..-...+-..|.+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 346788999998888654 4 5566655 6667777788999999999999988653 33333333333446677999
Q ss_pred hHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHh
Q 038758 117 EITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEM 189 (354)
Q Consensus 117 ~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 189 (354)
++|.++++.+ +-+..++-.-+...-..|.--+|++-+....+ .|...|.-+-..|...|++++|.-.++++.
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l- 181 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL- 181 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH-
Confidence 9999999998 33444554445555555666667666554443 588999999999999999999999999997
Q ss_pred hhcCCCCCcchHH-HHHHHhhhhc---CccccchhhhHhhhh
Q 038758 190 IQTDMQPNTISLS-GVLAACAQVK---GVKLGKAIHGYVLRH 227 (354)
Q Consensus 190 ~~~~~~p~~~t~~-~ll~~~~~~~---~~~~a~~~~~~~~~~ 227 (354)
-+.|....|. .+-..+.-.| +...+.+.+.+..+.
T Consensus 182 ---l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 ---LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred ---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 3456555443 2333332222 344455555554443
No 159
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.02 Score=46.07 Aligned_cols=172 Identities=15% Similarity=0.115 Sum_probs=108.4
Q ss_pred hhhhHhhhhh---hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCC
Q 038758 22 LGSQLLEVFC---NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG 98 (354)
Q Consensus 22 ~~~~li~~~~---~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 98 (354)
-|+.|++.+. .-..+++.+-.....+..++.+++=.. ...+.++..+...+.+.-..+.+....+...+.
T Consensus 138 pqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~ 210 (366)
T KOG2796|consen 138 PQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQ 210 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcc
Confidence 3567777776 223334444444444666666665432 245666666777777877888888887766566
Q ss_pred CceehhhHHHHHHhcCChhHHHHHHHhh-----ccccchhhHHH-----HHHHhcCchhHHHHHhccCCCC---ChhhhH
Q 038758 99 NACVKRPLLDLFIKCGRMEITSGLFEEM-----DQDFLVNNSLI-----DFYAKCRYLKVSHCKFSKIKQK---DLVSWN 165 (354)
Q Consensus 99 ~~~~~~~li~~~~~~g~~~~a~~~~~~~-----~~~~~~~~~li-----~~~~~~~~~~~a~~~~~~~~~~---~~~~~~ 165 (354)
++.....|++.-.+.||.+.|...|++. ..+..+.+.++ ..|.-..++.+|...|.++... |+..-|
T Consensus 211 ~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~N 290 (366)
T KOG2796|consen 211 EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANN 290 (366)
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhc
Confidence 7777788888888888888888888866 23344444433 3455667788888888777753 333334
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHH
Q 038758 166 AMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGV 204 (354)
Q Consensus 166 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~l 204 (354)
.-.-+..-.|+..+|.+.++.|. . ..|...+-+++
T Consensus 291 nKALcllYlg~l~DAiK~~e~~~--~--~~P~~~l~es~ 325 (366)
T KOG2796|consen 291 NKALCLLYLGKLKDALKQLEAMV--Q--QDPRHYLHESV 325 (366)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh--c--cCCccchhhhH
Confidence 33333333588889999998887 3 34444444433
No 160
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.14 E-value=0.073 Score=47.43 Aligned_cols=127 Identities=13% Similarity=0.200 Sum_probs=76.2
Q ss_pred hhhHHHHHHHhcCchhHHHHHhccCCC----C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcch-HHHHH
Q 038758 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQ----K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTIS-LSGVL 205 (354)
Q Consensus 132 ~~~~li~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t-~~~ll 205 (354)
+|-.+++.-.+..-++.|..+|.+.++ + ++..++++|.-+| .++.+-|.++|+-=.+ . -+|... -...+
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLk-k---f~d~p~yv~~Yl 442 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLK-K---FGDSPEYVLKYL 442 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHH-h---cCCChHHHHHHH
Confidence 444444544455555555555555443 2 5666777777666 4667778888765431 2 223222 23445
Q ss_pred HHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038758 206 AACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281 (354)
Q Consensus 206 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (354)
..+...++-..++.+|+.+...+..+ ......|..+|.-=.+-|+...+.++-+++..
T Consensus 443 dfL~~lNdd~N~R~LFEr~l~s~l~~------------------~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 443 DFLSHLNDDNNARALFERVLTSVLSA------------------DKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHhCcchhHHHHHHHHHhccCCh------------------hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 66677777777888887777764411 22346677777777777777777777766654
No 161
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.044 Score=44.22 Aligned_cols=138 Identities=11% Similarity=0.058 Sum_probs=104.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHH----
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL---- 107 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li---- 107 (354)
.-+++++.+.-.|.+.-.++.+++..+...+.+......|.+.-.+.||.+.|...|+...+..-+.|..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 6677888888889999999999999998777778888888888899999999999999888765566665555544
Q ss_pred -HHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CChhhhHHHHH
Q 038758 108 -DLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSWNAMLA 169 (354)
Q Consensus 108 -~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~ 169 (354)
..|.-.+++..|.+.|.++ +.+...-|.-.-+..-.|+..+|.+..+.|.+ |...+-+.++-
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~ 327 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLF 327 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHH
Confidence 4566678888999988877 33444445444444556899999999999986 54444444443
No 162
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.09 E-value=0.15 Score=43.54 Aligned_cols=111 Identities=14% Similarity=0.192 Sum_probs=70.6
Q ss_pred cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 038758 198 TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLR 277 (354)
Q Consensus 198 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 277 (354)
..+.+..+.-+...|....|.++-.... .|+-..|-.-+.+++..++|++-..+-.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk------------------------v~dkrfw~lki~aLa~~~~w~eL~~fa~ 232 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK------------------------VPDKRFWWLKIKALAENKDWDELEKFAK 232 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC------------------------CcHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 4456666666777777666666543322 5677777777888888888776665432
Q ss_pred HHHHcCcCCCHhhHHHHHHHhhccCcccCc--cccchhHHHHHHHHHHhcCChhHHHHHhhcCC
Q 038758 278 DVIVANVKPNTVTIVSVLPACLKLAALPQG--LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339 (354)
Q Consensus 278 ~m~~~g~~p~~~t~~~li~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (354)
. +-++.-|...+.+|.+.|...++ +-|. ..+..-+..|.++|++.+|.+.--+..
T Consensus 233 s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k-~~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 233 S------KKSPIGYEPFVEACLKYGNKKEASKYIPK-IPDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred C------CCCCCChHHHHHHHHHCCCHHHHHHHHHh-CChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 1 22346777777777777776666 2222 233667777888888888776654444
No 163
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.08 E-value=0.025 Score=48.26 Aligned_cols=107 Identities=10% Similarity=0.022 Sum_probs=75.2
Q ss_pred ceehhhHHHHHHhcCChhHHHHHHHhh-ccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChh
Q 038758 100 ACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFRE 178 (354)
Q Consensus 100 ~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 178 (354)
..+.+..|.-+...|+...|.++-.+. .|+..-|-..+.+++..++|++-+++... ..++.-|..++.+|.+.|...
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHH
Confidence 345566677777788888888887777 56677778888888888888888876654 345677888888888888888
Q ss_pred HHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchh
Q 038758 179 EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAI 220 (354)
Q Consensus 179 ~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 220 (354)
+|..++..+. +..-+..|.+.|++.+|.+.
T Consensus 255 eA~~yI~k~~------------~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 255 EASKYIPKIP------------DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHhCC------------hHHHHHHHHHCCCHHHHHHH
Confidence 8877776543 23444555555555555443
No 164
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.08 E-value=0.002 Score=40.99 Aligned_cols=62 Identities=13% Similarity=0.288 Sum_probs=49.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC--C
Q 038758 264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH--K 341 (354)
Q Consensus 264 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~ 341 (354)
.+.|++++|+++|+++.+. .|+.. .++..+..+|.+.|++++|.++++++.. |
T Consensus 2 l~~~~~~~A~~~~~~~l~~--~p~~~-----------------------~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--NPDNP-----------------------EARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--TTTSH-----------------------HHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHH--CCCCH-----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 5689999999999999865 45432 2366899999999999999999999987 7
Q ss_pred CcccHHHhh
Q 038758 342 NLVSWNVMI 350 (354)
Q Consensus 342 ~~~~~~~li 350 (354)
+...|..++
T Consensus 57 ~~~~~~~l~ 65 (68)
T PF14559_consen 57 DNPEYQQLL 65 (68)
T ss_dssp THHHHHHHH
T ss_pred CHHHHHHHH
Confidence 766666654
No 165
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.06 E-value=0.11 Score=47.34 Aligned_cols=225 Identities=8% Similarity=0.006 Sum_probs=112.0
Q ss_pred HHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHH
Q 038758 8 HAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDV 87 (354)
Q Consensus 8 ~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 87 (354)
++++.++|-+|+..........-.-|.--.+.|.++|.-.+|+++|..|+- --..+-+...|+.++-..+
T Consensus 623 L~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRM----------FD~aQE~~~~g~~~eKKmL 692 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRM----------FDYAQEFLGSGDPKEKKML 692 (1081)
T ss_pred HHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHH----------HHHHHHHhhcCChHHHHHH
Confidence 346777888888774333322211344444444455555555555544431 1122334444444444433
Q ss_pred HHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHH
Q 038758 88 YDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAM 167 (354)
Q Consensus 88 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 167 (354)
.+.-.+. ..++.-=.+-...+...|+.++|..+ ....|-.+-+.++-.++...+..+...+
T Consensus 693 ~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i-----------------~~d~gW~d~lidI~rkld~~ere~l~~~ 753 (1081)
T KOG1538|consen 693 IRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEI-----------------CGDHGWVDMLIDIARKLDKAEREPLLLC 753 (1081)
T ss_pred HHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhh-----------------hhcccHHHHHHHHHhhcchhhhhHHHHH
Confidence 3322211 11111112334455667777777654 3345555666666666655555555555
Q ss_pred HHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcc
Q 038758 168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQ 247 (354)
Q Consensus 168 i~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 247 (354)
..-+.+...+..|.++|..|- . ...+++.....+++.+|..+-+...+.-.+.....+++-.
T Consensus 754 a~ylk~l~~~gLAaeIF~k~g--D---------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLA------- 815 (1081)
T KOG1538|consen 754 ATYLKKLDSPGLAAEIFLKMG--D---------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLA------- 815 (1081)
T ss_pred HHHHhhccccchHHHHHHHhc--c---------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhh-------
Confidence 555556666777777777774 1 2344555566666666666655444332111000000000
Q ss_pred cCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038758 248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283 (354)
Q Consensus 248 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 283 (354)
...-|.--=.+|.+.|+-.+|.++++++....
T Consensus 816 ----E~DrFeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 816 ----ENDRFEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred ----hhhhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 00112223356778888888888888876543
No 166
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.3 Score=45.47 Aligned_cols=178 Identities=11% Similarity=-0.007 Sum_probs=101.8
Q ss_pred HHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHH--------HhCCCcCCcccHHH-----HH
Q 038758 6 QVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLM--------IDKGVRPDHFVCPK-----VY 72 (354)
Q Consensus 6 ~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m--------~~~~~~p~~~~~~~-----ll 72 (354)
+|.+.+..++-+-.+.....|+++- ++-.++.+..++++-..+-++. ..-|++.+..-|.. ++
T Consensus 369 aV~~CI~aA~~ef~pe~QK~LL~AA----sfGk~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi 444 (829)
T KOG2280|consen 369 AVDDCIEAACDEFQPEEQKSLLRAA----SFGKASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVI 444 (829)
T ss_pred HHHHHHHHhhhccCHHHHHHHHHHH----hhcccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhh
Confidence 4445555556566666666777663 2333444555666555554443 23366666665554 45
Q ss_pred HHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcC---ChhHHHHHHHhhc---cccchhhHHHHHHHhcCch
Q 038758 73 KACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG---RMEITSGLFEEMD---QDFLVNNSLIDFYAKCRYL 146 (354)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~---~~~~~~~~li~~~~~~~~~ 146 (354)
+-+...+.+..|.++-..+...-.. +..+|.....-+.+.. +-+.+..+-+++. -....|..+..-.-..|+.
T Consensus 445 ~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~ 523 (829)
T KOG2280|consen 445 DRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRF 523 (829)
T ss_pred HHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcH
Confidence 6666777777777776665421111 1445566666666552 3333334444442 2455667777777778888
Q ss_pred hHHHHHhccCCC--------CChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 147 KVSHCKFSKIKQ--------KDLVSWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 147 ~~a~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
+-|..+++.=+. .+..-+...+.-+.+.|+.+....++-.+.
T Consensus 524 ~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 524 ELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred HHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 888888765442 122335556666677777777777666654
No 167
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.99 E-value=0.0079 Score=52.45 Aligned_cols=87 Identities=13% Similarity=0.008 Sum_probs=72.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChh
Q 038758 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRME 117 (354)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 117 (354)
......|++++|++.|++..+.. +-+...|..+..++...|+++.|...++...+.. +.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 44567899999999999998864 3355567777888889999999999999998875 556778888889999999999
Q ss_pred HHHHHHHhh
Q 038758 118 ITSGLFEEM 126 (354)
Q Consensus 118 ~a~~~~~~~ 126 (354)
+|...|++.
T Consensus 88 eA~~~~~~a 96 (356)
T PLN03088 88 TAKAALEKG 96 (356)
T ss_pred HHHHHHHHH
Confidence 999999887
No 168
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.086 Score=42.38 Aligned_cols=154 Identities=9% Similarity=0.026 Sum_probs=113.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHH-HHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVY-KACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLF 110 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 110 (354)
.|-.++-+....|+.+.|...++.+...- |...-...+= -.+-..|++++|.++++.+.+.+ +.|.+++---+...
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHH
Confidence 66677777788899999999999998763 4443222221 22446789999999999999876 66777787777777
Q ss_pred HhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCC--CCChhhh-HHHHHHHHh---CCChhHH
Q 038758 111 IKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK--QKDLVSW-NAMLAGYAL---GGFREEV 180 (354)
Q Consensus 111 ~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~~~~~-~~li~~~~~---~~~~~~a 180 (354)
-..|+.-+|.+-+... ..|...|.-+-..|...|++++|.-.++++. +|....| ..+...+.- ..+.+.+
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7778777776555444 8899999999999999999999999999886 4644443 333333322 3356778
Q ss_pred HHHHHHHH
Q 038758 181 TNLLDEME 188 (354)
Q Consensus 181 ~~~~~~m~ 188 (354)
.+.|....
T Consensus 211 rkyy~~al 218 (289)
T KOG3060|consen 211 RKYYERAL 218 (289)
T ss_pred HHHHHHHH
Confidence 88888776
No 169
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.96 E-value=0.059 Score=51.50 Aligned_cols=167 Identities=9% Similarity=0.008 Sum_probs=113.2
Q ss_pred hhhhhhHhhhhh-------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHH
Q 038758 20 AFLGSQLLEVFC-------NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92 (354)
Q Consensus 20 ~~~~~~li~~~~-------~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 92 (354)
.-.++++|++.- .|..|-..|+..-+...|...|....+.+ .-+......+.+.|++..+.+.|..+.-..-
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 334445555443 78888888888888888999998887764 3456667888888999999998888732221
Q ss_pred HhccCCC--ceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCCCChh-hhH
Q 038758 93 SIKFEGN--ACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV-SWN 165 (354)
Q Consensus 93 ~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~ 165 (354)
+.. +.- ...|....-.|.+.++...+..-|+.- +.|...|..+..+|.++|++..|.++|.+....++. +|.
T Consensus 554 qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 554 QKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 111 111 112222344566777777777777765 667788889999999999999999999877753332 333
Q ss_pred HHHH--HHHhCCChhHHHHHHHHHH
Q 038758 166 AMLA--GYALGGFREEVTNLLDEME 188 (354)
Q Consensus 166 ~li~--~~~~~~~~~~a~~~~~~m~ 188 (354)
..-. .-+..|++.+|+..+....
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2222 2355688888888877663
No 170
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.91 E-value=0.012 Score=43.93 Aligned_cols=85 Identities=11% Similarity=0.099 Sum_probs=52.3
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhH
Q 038758 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEI 118 (354)
Q Consensus 39 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 118 (354)
.+...|++++|..+|+.....+ +-+..-|-.|-..+-..|++++|.+.|....... +-++..+-.+..++...|+.+.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHH
Confidence 3445677777777777666543 2233334455555556667777777777666655 4556666666667777777777
Q ss_pred HHHHHHh
Q 038758 119 TSGLFEE 125 (354)
Q Consensus 119 a~~~~~~ 125 (354)
|.+.|+.
T Consensus 122 A~~aF~~ 128 (157)
T PRK15363 122 AIKALKA 128 (157)
T ss_pred HHHHHHH
Confidence 7666664
No 171
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.90 E-value=0.0049 Score=45.89 Aligned_cols=56 Identities=5% Similarity=-0.082 Sum_probs=35.5
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758 70 KVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 70 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
.+-..+...|++++|.++|+.+.... +-+..-|-.|..++-..|++++|...|...
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A 95 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRA 95 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33344556777777777777776654 444555666666666777777777666654
No 172
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.89 E-value=0.093 Score=44.14 Aligned_cols=220 Identities=10% Similarity=0.021 Sum_probs=116.6
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCcC--CcccH------------HHHHHHHhccCChhhHHHHHHHHHHhccCCCceehh
Q 038758 39 MYNVLGYYEEIVNLFYLMIDKGVRP--DHFVC------------PKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKR 104 (354)
Q Consensus 39 ~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~------------~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 104 (354)
.+.++|.+++|..=|+...++.... +...+ ...+..+...|+...|+.....+.+.. +-+...|.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~ 193 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQ 193 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHH
Confidence 4567788888888888877664211 11111 122334456677777777777777653 44666666
Q ss_pred hHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CChhh----hHHH-------
Q 038758 105 PLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVS----WNAM------- 167 (354)
Q Consensus 105 ~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~----~~~l------- 167 (354)
.-..+|...|++..|..=+... ..++..+--+-..+-..|+.+.++...++..+ ||... |..+
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~l 273 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSL 273 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHH
Confidence 6677777777777776555444 33444555555566666777776666665543 32211 1111
Q ss_pred --HHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHH---HHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHH
Q 038758 168 --LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLS---GVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSC 242 (354)
Q Consensus 168 --i~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 242 (354)
+....+.++|.++++-.+... +........+|+ .+-.++..-+.+.+|.+.-.++++..
T Consensus 274 es~e~~ie~~~~t~cle~ge~vl--k~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-------------- 337 (504)
T KOG0624|consen 274 ESAEQAIEEKHWTECLEAGEKVL--KNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-------------- 337 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHH--hcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC--------------
Confidence 122334455555555554443 222111122222 22222223333334433333333221
Q ss_pred HHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038758 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282 (354)
Q Consensus 243 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (354)
+.|+.++.--..+|.-...++.|+.=|+...+.
T Consensus 338 -------~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 338 -------PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred -------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 234666666667777777788888888777654
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.88 E-value=0.015 Score=49.07 Aligned_cols=222 Identities=12% Similarity=0.087 Sum_probs=107.2
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhccCCC-----ceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHh
Q 038758 68 CPKVYKACSELKDYRVGKDVYDYMISIKFEGN-----ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAK 142 (354)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~ 142 (354)
|......|...+++++|.+.|....+.....+ ...|.....+|.+. ++++|.+.+++ .+..|..
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~----------A~~~y~~ 106 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEK----------AIEIYRE 106 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHH----------HHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHH----------HHHHHHh
Confidence 44445555556666666666665543221110 11222222233222 44444443332 3444444
Q ss_pred cCchhHHHHHhccCCCCChhhhHHHHHHHHhC-CChhHHHHHHHHHHhh--hcCCCCC--cchHHHHHHHhhhhcCcccc
Q 038758 143 CRYLKVSHCKFSKIKQKDLVSWNAMLAGYALG-GFREEVTNLLDEMEMI--QTDMQPN--TISLSGVLAACAQVKGVKLG 217 (354)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~--~~~~~p~--~~t~~~ll~~~~~~~~~~~a 217 (354)
.|++..|-+ .+..+...|-.. |++++|.+.|++..+. ..| .+. ...+..+...+.+.|++++|
T Consensus 107 ~G~~~~aA~-----------~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A 174 (282)
T PF14938_consen 107 AGRFSQAAK-----------CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEA 174 (282)
T ss_dssp CT-HHHHHH-----------HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred cCcHHHHHH-----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHH
Confidence 444443333 344556666666 7888888888876410 122 111 23455666677788888888
Q ss_pred chhhhHhhhhccccccccchhHHHHHHhcccCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHHc--CcCCCHhhHHHH
Q 038758 218 KAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVV-VWNSIISAFVRSGQVVDALDLLRDVIVA--NVKPNTVTIVSV 294 (354)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~l 294 (354)
..+|+++......... ...+.. .|-..+-.+...|+...|.+.+++.... ++..+..
T Consensus 175 ~~~~e~~~~~~l~~~l---------------~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E----- 234 (282)
T PF14938_consen 175 IEIYEEVAKKCLENNL---------------LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSRE----- 234 (282)
T ss_dssp HHHHHHHHHTCCCHCT---------------TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHH-----
T ss_pred HHHHHHHHHHhhcccc---------------cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH-----
Confidence 8888777654331000 001111 2223344556679999999999998743 2222221
Q ss_pred HHHhhccCcccCccccchhHHHHHHHHHHh--cCChhHHHHHhhcCCCCCcccHHHh
Q 038758 295 LPACLKLAALPQGLGTGSFVWNALIDMYGR--CGAIQKSRKIFVLMPHKNLVSWNVM 349 (354)
Q Consensus 295 i~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~l 349 (354)
-.....||+++-. ...+++|..-|+.+.+.|.+--..|
T Consensus 235 -----------------~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l 274 (282)
T PF14938_consen 235 -----------------YKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKML 274 (282)
T ss_dssp -----------------HHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHH
T ss_pred -----------------HHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHH
Confidence 1224445555532 3445566666666666554444433
No 174
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.85 E-value=0.011 Score=51.46 Aligned_cols=29 Identities=10% Similarity=-0.055 Sum_probs=15.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038758 253 VVVWNSIISAFVRSGQVVDALDLLRDVIV 281 (354)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (354)
...|..+..+|...|++++|+..|++..+
T Consensus 70 ~~a~~~lg~~~~~lg~~~eA~~~~~~al~ 98 (356)
T PLN03088 70 AKAYLRKGTACMKLEEYQTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34455555555555555555555555553
No 175
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.84 E-value=0.071 Score=47.79 Aligned_cols=187 Identities=15% Similarity=0.090 Sum_probs=135.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccC-----C---Cceeh
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE-----G---NACVK 103 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-----~---~~~~~ 103 (354)
.|--|-.....+++-..|+..+++..+.. +-|....-.|.-.|...|.-..|.+.++...+...+ + +...-
T Consensus 321 AW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~ 399 (579)
T KOG1125|consen 321 AWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE 399 (579)
T ss_pred HHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc
Confidence 78888888889999999999999988764 224445666666788888888888888888665411 0 11111
Q ss_pred hhHHHHHHhcCChhHHHHHHHhh------ccccchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhC
Q 038758 104 RPLLDLFIKCGRMEITSGLFEEM------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALG 174 (354)
Q Consensus 104 ~~li~~~~~~g~~~~a~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~ 174 (354)
.. ..+.....+....++|-++ ..|..++..|.-.|--.|++++|...|+...+ | |-..||-|-..++..
T Consensus 400 ~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~ 477 (579)
T KOG1125|consen 400 NT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANG 477 (579)
T ss_pred CC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCC
Confidence 10 2333444555666677666 36888899999999999999999999998764 4 667899999999999
Q ss_pred CChhHHHHHHHHHHhhhcCCCCC-cchHHHHHHHhhhhcCccccchhhhHhh
Q 038758 175 GFREEVTNLLDEMEMIQTDMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVL 225 (354)
Q Consensus 175 ~~~~~a~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 225 (354)
.+.++|+.-|++.. .++|+ +...-.+--+|...|.+++|...|-..+
T Consensus 478 ~~s~EAIsAY~rAL----qLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 478 NRSEEAISAYNRAL----QLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred cccHHHHHHHHHHH----hcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999987 45666 2333334446788888888776654443
No 176
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.83 E-value=0.0031 Score=40.05 Aligned_cols=46 Identities=17% Similarity=0.300 Sum_probs=17.5
Q ss_pred CChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHh
Q 038758 79 KDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEE 125 (354)
Q Consensus 79 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 125 (354)
|++++|.++|+.+.+.. +-+...+..+..+|.+.|++++|.+++++
T Consensus 5 ~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~ 50 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLER 50 (68)
T ss_dssp THHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444443332 22333333344444444444444444433
No 177
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.77 E-value=0.027 Score=43.48 Aligned_cols=61 Identities=13% Similarity=-0.017 Sum_probs=25.4
Q ss_pred hHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC--cchHHHHHHHhhhhcCccccchhhhHhhh
Q 038758 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN--TISLSGVLAACAQVKGVKLGKAIHGYVLR 226 (354)
Q Consensus 164 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 226 (354)
+..+...+...|++++|...|++.. .....+. ...+..+...+.+.|++++|...+....+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEAL--KLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH--HHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444455555555554443 2111111 12333444444444444444444444333
No 178
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.76 E-value=0.076 Score=43.54 Aligned_cols=58 Identities=17% Similarity=0.083 Sum_probs=39.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHh
Q 038758 167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYV 224 (354)
Q Consensus 167 li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 224 (354)
+..-|.+.|.+..|..=++.+.+.=.+.+........+..++...|..+++......+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3445778888888888888886322344444556667778888888888777765443
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.75 E-value=0.052 Score=44.50 Aligned_cols=57 Identities=11% Similarity=0.205 Sum_probs=40.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhc
Q 038758 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVL 337 (354)
Q Consensus 259 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 337 (354)
+..-|.+.|.+..|..-++.+.+. -|+... .......++++|.+.|..++|.++...
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~--Yp~t~~--------------------~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRD--YPDTQA--------------------TRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHH--CCCCch--------------------HHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 345688899999999999999864 333322 233356778888888888888876654
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.72 E-value=0.024 Score=43.62 Aligned_cols=96 Identities=9% Similarity=-0.064 Sum_probs=56.7
Q ss_pred hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCC--CcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchh
Q 038758 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP--NTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFV 238 (354)
Q Consensus 161 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 238 (354)
...|..+...+...|++++|...|+... .....| ...++..+-..+...|+.++|...+....+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al--~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~---------- 102 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAM--RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN---------- 102 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH--hccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------
Confidence 3445666666677777777777777775 222111 12356666666777777777777776666542
Q ss_pred HHHHHHhcccCCCCcchHHHHHHHHH-------hcCCHHHHHHHHHHH
Q 038758 239 ICSCSVFNQLSTRDVVVWNSIISAFV-------RSGQVVDALDLLRDV 279 (354)
Q Consensus 239 ~~a~~~~~~~~~~~~~~~~~li~~~~-------~~g~~~~a~~~~~~m 279 (354)
+....+++.+...+. ..|+++.|...+++-
T Consensus 103 -----------~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 103 -----------PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred -----------cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 222344455555555 777877665555543
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.67 E-value=0.032 Score=51.10 Aligned_cols=137 Identities=10% Similarity=0.016 Sum_probs=82.3
Q ss_pred CcCCcccHHHHHHHHhcc-----CChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcC--------ChhHHHHHHHhh-
Q 038758 61 VRPDHFVCPKVYKACSEL-----KDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG--------RMEITSGLFEEM- 126 (354)
Q Consensus 61 ~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~~- 126 (354)
.+.|...|...+++.... ++.+.|.++|++..+.. +-+...+..+..++.... +...+.+..++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 355667788888775432 23667888888888763 223344444433333221 122333333331
Q ss_pred -----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcc
Q 038758 127 -----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI 199 (354)
Q Consensus 127 -----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~ 199 (354)
..+...|.++.-.....|++++|...+++... |+...|..+...+...|+.++|.+.|++.. .+.|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~----~L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAF----NLRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hcCCCCc
Confidence 22334566665555567888888888877653 666677777788888888888888887765 3445555
Q ss_pred hHH
Q 038758 200 SLS 202 (354)
Q Consensus 200 t~~ 202 (354)
||.
T Consensus 488 t~~ 490 (517)
T PRK10153 488 TLY 490 (517)
T ss_pred hHH
Confidence 543
No 182
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.65 E-value=0.021 Score=41.30 Aligned_cols=54 Identities=15% Similarity=0.102 Sum_probs=44.3
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHc-CcCCCHhhHHHHHHHhhccCc
Q 038758 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA-NVKPNTVTIVSVLPACLKLAA 303 (354)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~~~~ 303 (354)
.|+..+..+++.+|+..|++..|+++.+...+. +++.+..+|..|++=+....+
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 689999999999999999999999999998764 777777887777775544433
No 183
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.63 E-value=0.34 Score=42.49 Aligned_cols=133 Identities=9% Similarity=-0.006 Sum_probs=88.7
Q ss_pred hhhHHHHHHHHhCCChhHHHHHHHHHHhhhcC-CCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc-------
Q 038758 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST------- 233 (354)
Q Consensus 162 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------- 233 (354)
..|...|++-.+..-.+.|..+|-+.+ +.| +.++...+++++..++ .|+...|..+|+.-+..-.+.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~r--k~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLR--KEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHh--ccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHH
Confidence 346667777777777888888998888 777 6788888888888766 46777777777665554333333
Q ss_pred ---ccchhHHHHHHhcccCC---CC--cchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhh
Q 038758 234 ---ACGFVICSCSVFNQLST---RD--VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACL 299 (354)
Q Consensus 234 ---~~~~~~~a~~~~~~~~~---~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 299 (354)
..++-+.|..+|+...+ .+ ...|-.+|.-=.+-|+...|..+=+.|.+. -|-..+......-|.
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 66777777777775431 12 356777787777788887777776666543 444444444444443
No 184
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=96.58 E-value=0.12 Score=39.25 Aligned_cols=134 Identities=7% Similarity=-0.050 Sum_probs=90.0
Q ss_pred HHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhcc
Q 038758 49 IVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQ 128 (354)
Q Consensus 49 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 128 (354)
..+.++.+.+.+++|+...+..+++.+.+.|++.... .+...++.+|.......+-.+. +....+.++=-+|-.
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHH
Confidence 3466677778899999999999999999999876444 4455666666655443332222 233444444444433
Q ss_pred ccc-hhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 129 DFL-VNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 129 ~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
... .+..++..+...|++-+|.++.++....+......++.+..+.+|...-..+|+-.+
T Consensus 87 RL~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 87 RLGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred HhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333 667777888888888888888877655555556677788777777766666666554
No 185
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.51 E-value=0.075 Score=47.56 Aligned_cols=157 Identities=12% Similarity=0.084 Sum_probs=103.0
Q ss_pred HHhccCChhhHHHHHHHHHHhccCC--CceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHH
Q 038758 74 ACSELKDYRVGKDVYDYMISIKFEG--NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHC 151 (354)
Q Consensus 74 ~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 151 (354)
...-.++++.+.+..+. ..+.| ...-.+.+++.+.+.|..+.|+++..+ -..-.....+.|+++.|.+
T Consensus 270 ~av~~~d~~~v~~~i~~---~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-------~~~rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAA---SNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD-------PDHRFELALQLGNLDIALE 339 (443)
T ss_dssp HHHHTT-HHH-----HH---HHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS--------HHHHHHHHHHCT-HHHHHH
T ss_pred HHHHcCChhhhhhhhhh---hhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC-------hHHHhHHHHhcCCHHHHHH
Confidence 34455677766555531 11111 133467788888888888888876443 2345566778888888888
Q ss_pred HhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccc
Q 038758 152 KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHL 231 (354)
Q Consensus 152 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 231 (354)
+.++.. +...|..|.....+.|+++-|.+.|.... -|..++-.|.-.|+.+...++.+.....|-
T Consensus 340 ~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-- 404 (443)
T PF04053_consen 340 IAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAK-----------DFSGLLLLYSSTGDREKLSKLAKIAEERGD-- 404 (443)
T ss_dssp HCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---
T ss_pred HHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----------CccccHHHHHHhCCHHHHHHHHHHHHHccC--
Confidence 888775 66789999999999999999999998775 366676677777887777777666665553
Q ss_pred ccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 038758 232 STACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279 (354)
Q Consensus 232 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 279 (354)
+|....++...|+.++..+++.+-
T Consensus 405 ------------------------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 ------------------------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ------------------------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ------------------------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 666777777788888888887654
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.51 E-value=0.019 Score=41.10 Aligned_cols=86 Identities=15% Similarity=0.111 Sum_probs=50.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCcCC--cccHHHHHHHHhccCChhhHHHHHHHHHHhccCCC----ceehhhHHHHHH
Q 038758 38 GMYNVLGYYEEIVNLFYLMIDKGVRPD--HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN----ACVKRPLLDLFI 111 (354)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~ 111 (354)
.++-..|+.++|..+|++....|+... ...+..+-+.+...|++++|..+++...... |+ ......+..++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 345566777777777777777765443 2235556666777777777777777766542 32 111122233455
Q ss_pred hcCChhHHHHHHHh
Q 038758 112 KCGRMEITSGLFEE 125 (354)
Q Consensus 112 ~~g~~~~a~~~~~~ 125 (354)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 66666666665543
No 187
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.48 E-value=0.053 Score=38.83 Aligned_cols=103 Identities=16% Similarity=0.039 Sum_probs=78.8
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhccCCC--ceehhhHHHHHHhcCChhHHHHHHHhh---ccc----cchhhHHHHHHH
Q 038758 71 VYKACSELKDYRVGKDVYDYMISIKFEGN--ACVKRPLLDLFIKCGRMEITSGLFEEM---DQD----FLVNNSLIDFYA 141 (354)
Q Consensus 71 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~----~~~~~~li~~~~ 141 (354)
+-.++-..|+.++|..+|+.....|.... ...+-.+.+.+...|++++|..++++. .|+ ......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34466788999999999999999886554 346667888999999999999999988 233 222233445777
Q ss_pred hcCchhHHHHHhccCCCCChhhhHHHHHHHHh
Q 038758 142 KCRYLKVSHCKFSKIKQKDLVSWNAMLAGYAL 173 (354)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 173 (354)
..|+.++|.+.+-....++...|.--|..|..
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFYAD 118 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999876666666788888877764
No 188
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.47 E-value=0.15 Score=37.83 Aligned_cols=125 Identities=11% Similarity=0.085 Sum_probs=68.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhc
Q 038758 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKC 113 (354)
Q Consensus 34 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 113 (354)
..++..+...+........++.+...+ ..+...++.++..|++.+. +...+.++ . ..+.......++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~---~---~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLD---N---KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHH---h---ccccCCHHHHHHHHHHc
Confidence 356666777777777888888777766 3566667777777776532 22223322 1 12333344466666666
Q ss_pred CChhHHHHHHHhhccccchhhHHHHHHHhc-CchhHHHHHhccCCCCChhhhHHHHHHHH
Q 038758 114 GRMEITSGLFEEMDQDFLVNNSLIDFYAKC-RYLKVSHCKFSKIKQKDLVSWNAMLAGYA 172 (354)
Q Consensus 114 g~~~~a~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~li~~~~ 172 (354)
+.++++.-++.++..... .+..+... ++++.|.+.+.+- .+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~~~~----Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGNFKD----AIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcCHHH----HHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 666666666665532222 22222222 5566666655542 23445555554443
No 189
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.47 E-value=0.033 Score=46.11 Aligned_cols=93 Identities=6% Similarity=0.014 Sum_probs=68.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCc----ccHHHHHHHHhccCChhhHHHHHHHHHHhc--cCCCceehhh
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH----FVCPKVYKACSELKDYRVGKDVYDYMISIK--FEGNACVKRP 105 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ 105 (354)
.|+..+..+.+.|++++|...|+.+.+.. |+. ..+-.+...+...|+++.|...|+.+.+.- .+.....+-.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 56776666677799999999999988763 443 356778888889999999999999988652 1122334444
Q ss_pred HHHHHHhcCChhHHHHHHHhh
Q 038758 106 LLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 106 li~~~~~~g~~~~a~~~~~~~ 126 (354)
+..++...|+.++|.++|+++
T Consensus 223 lg~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 566777888888888887765
No 190
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.44 E-value=0.014 Score=36.66 Aligned_cols=57 Identities=11% Similarity=0.117 Sum_probs=41.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHh
Q 038758 37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI 94 (354)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 94 (354)
-..+.+.|++++|...|++..+.. +-+...+..+...+...|++++|...|+...+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356677888888888888888765 235556777777778888888888888887765
No 191
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.38 E-value=0.011 Score=44.20 Aligned_cols=70 Identities=14% Similarity=0.089 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHH-----hccCCCcee
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS-----IKFEGNACV 102 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~ 102 (354)
....++..+...|++++|..+.+.+.... +.+...|..+|.++...|+...|.++|+.+.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 55666666777888888888888887764 45666788888888888888888888887753 477776654
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.35 E-value=0.19 Score=38.53 Aligned_cols=97 Identities=13% Similarity=0.055 Sum_probs=65.2
Q ss_pred CcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh---cc---ccchhh
Q 038758 61 VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM---DQ---DFLVNN 134 (354)
Q Consensus 61 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~---~~~~~~ 134 (354)
..|+...-..|..++.+.|+..+|...|++...--+--|....-.+.++....+++..|...++++ +| +..+.-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 456776677777777888888888888877765444556666667777777778888888777776 22 222333
Q ss_pred HHHHHHHhcCchhHHHHHhccCC
Q 038758 135 SLIDFYAKCRYLKVSHCKFSKIK 157 (354)
Q Consensus 135 ~li~~~~~~~~~~~a~~~~~~~~ 157 (354)
.+...|...|..++|+.-|+...
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~ 187 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAI 187 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHH
Confidence 44556666777777777776654
No 193
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.33 E-value=0.045 Score=44.64 Aligned_cols=114 Identities=15% Similarity=0.127 Sum_probs=79.9
Q ss_pred HHHHhccCC--CCChhhhHHHHHHHHhC-----CChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhh
Q 038758 149 SHCKFSKIK--QKDLVSWNAMLAGYALG-----GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIH 221 (354)
Q Consensus 149 a~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 221 (354)
.++.|.... +.|-.+|-+.+..|... +..+=....++.|+ +-|+.-|..+|+.+|+.+-+..-
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~--eyGVerDl~vYk~LlnvfPKgkf-------- 122 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMK--EYGVERDLDVYKGLLNVFPKGKF-------- 122 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH--HhcchhhHHHHHHHHHhCccccc--------
Confidence 344565555 46777888888877654 55677777788998 99999999999999987654321
Q ss_pred hHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhcc
Q 038758 222 GYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301 (354)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 301 (354)
.|. ..+-...-.|-++ -+=++.++++|...|+.||..+-..|++++.+.
T Consensus 123 ----------------------------iP~-nvfQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~ 171 (406)
T KOG3941|consen 123 ----------------------------IPQ-NVFQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRW 171 (406)
T ss_pred ----------------------------ccH-HHHHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccc
Confidence 111 1122222223322 334789999999999999999988999988887
Q ss_pred Cc
Q 038758 302 AA 303 (354)
Q Consensus 302 ~~ 303 (354)
+-
T Consensus 172 ~~ 173 (406)
T KOG3941|consen 172 NF 173 (406)
T ss_pred cc
Confidence 74
No 194
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.31 E-value=0.0075 Score=37.90 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=40.7
Q ss_pred HHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758 72 YKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
...+...|++++|.+.|+...+.. +-+...+..+..++...|++++|...|++.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445677888888888888888765 446677778888888888888888887765
No 195
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.29 E-value=0.0083 Score=38.21 Aligned_cols=57 Identities=19% Similarity=0.167 Sum_probs=27.2
Q ss_pred cHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcC-ChhHHHHHHH
Q 038758 67 VCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG-RMEITSGLFE 124 (354)
Q Consensus 67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~ 124 (354)
.|..+...+...|++++|...|+...+.. +-+...|..+..++.+.| ++++|.+.++
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~ 62 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFE 62 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 34444444445555555555555555443 333444444555555555 4555544443
No 196
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=0.28 Score=45.61 Aligned_cols=62 Identities=15% Similarity=0.023 Sum_probs=39.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC----CcCCcccHHHHHHHHhccCChhhHHHHHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKG----VRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS 93 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (354)
+|..+-+.--..|+++-|..+++.=...+ +-.+..-+...+.-+...|+.+...+++-++.+
T Consensus 509 Sy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 509 SYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred eHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 56666666667788888887776543332 112444456666677777777777777666654
No 197
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.26 E-value=0.013 Score=43.93 Aligned_cols=67 Identities=13% Similarity=0.152 Sum_probs=43.7
Q ss_pred HHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 038758 203 GVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV- 281 (354)
Q Consensus 203 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~- 281 (354)
.++..+...|+++.+..+...+.... +-|...|..+|.+|...|+..+|.+.|+++.+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d---------------------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD---------------------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS---------------------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC---------------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 33344445566666666655555543 45788999999999999999999999988853
Q ss_pred ----cCcCCCHhh
Q 038758 282 ----ANVKPNTVT 290 (354)
Q Consensus 282 ----~g~~p~~~t 290 (354)
.|+.|+..+
T Consensus 126 l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 126 LREELGIEPSPET 138 (146)
T ss_dssp HHHHHS----HHH
T ss_pred HHHHhCcCcCHHH
Confidence 499999876
No 198
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.21 E-value=0.13 Score=47.39 Aligned_cols=75 Identities=8% Similarity=0.015 Sum_probs=40.9
Q ss_pred HHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHH
Q 038758 106 LLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLD 185 (354)
Q Consensus 106 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 185 (354)
.+.++.+..++++.+.+-+.++.+....-.+..++.+.|.-++|.+.|-+...|. ..+..|...++|.+|.++-+
T Consensus 828 ~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444446666666667777777777777777665554442 22334444445555544443
No 199
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.21 E-value=0.057 Score=39.06 Aligned_cols=100 Identities=7% Similarity=-0.026 Sum_probs=69.5
Q ss_pred ceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhc--cCCCCChhhhHHHHHHHHhCCCh
Q 038758 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFS--KIKQKDLVSWNAMLAGYALGGFR 177 (354)
Q Consensus 100 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~li~~~~~~~~~ 177 (354)
..++.++|.++++.|+++....+.+.. |+.=+.+-...+. +. .-..|+..+..+++.+|+..|++
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~------WgI~~~~~~~~~~-------~~~~spl~Pt~~lL~AIv~sf~~n~~i 68 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSV------WGIDVNGKKKEGD-------YPPSSPLYPTSRLLIAIVHSFGYNGDI 68 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHh------cCCCCCCccccCc-------cCCCCCCCCCHHHHHHHHHHHHhcccH
Confidence 456777888888888888888877765 0000000000000 11 11138899999999999999999
Q ss_pred hHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcC
Q 038758 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG 213 (354)
Q Consensus 178 ~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~ 213 (354)
..|+++++.... .-+++.+..+|..+++-+....+
T Consensus 69 ~~al~~vd~fs~-~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 69 FSALKLVDFFSR-KYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999875 67788888999999987655544
No 200
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.17 E-value=0.027 Score=46.31 Aligned_cols=85 Identities=16% Similarity=0.169 Sum_probs=54.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCcCC-CHhhHHHHHHHhhccCcccCc---------ccc-chhHHHHHHHHHHhcCChhHHH
Q 038758 264 VRSGQVVDALDLLRDVIVANVKP-NTVTIVSVLPACLKLAALPQG---------LGT-GSFVWNALIDMYGRCGAIQKSR 332 (354)
Q Consensus 264 ~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~~---------~~~-~~~~~~~li~~~~~~g~~~~A~ 332 (354)
.+.+++.+|+..|.+.++. .| |.+-|..=..+|++.|..+.| +.| -..+|..|..+|...|++++|.
T Consensus 92 m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 3445555555555555532 33 223334444555555554444 222 2457999999999999999999
Q ss_pred HHhhcCCC--CCcccHHHhh
Q 038758 333 KIFVLMPH--KNLVSWNVMI 350 (354)
Q Consensus 333 ~~~~~m~~--~~~~~~~~li 350 (354)
+.|++..+ |+-.+|..=|
T Consensus 170 ~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 170 EAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHhhhccCCCcHHHHHHH
Confidence 99999887 7777776543
No 201
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.14 E-value=0.55 Score=44.70 Aligned_cols=128 Identities=11% Similarity=0.106 Sum_probs=88.4
Q ss_pred hccCChhhHHHHHHHHHHhccCCCceehhhHHHH--HHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHH
Q 038758 76 SELKDYRVGKDVYDYMISIKFEGNACVKRPLLDL--FIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVS 149 (354)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a 149 (354)
...+++..|.+-...+.+. .|+.. |...+.+ +.+.|+.++|..+++.. ..|..+...+-.+|.+.+..++|
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 4567888888888887765 44443 3333333 46789999999998887 34677888899999999999999
Q ss_pred HHHhccCCC--CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhh
Q 038758 150 HCKFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209 (354)
Q Consensus 150 ~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~ 209 (354)
..+++...+ |+......+..+|++-+.+.+-.+.=-+|. +.++-+.+.|=++++...
T Consensus 97 ~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~Ly---K~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 97 VHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLY---KNFPKRAYYFWSVISLIL 155 (932)
T ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCcccchHHHHHHHHH
Confidence 999999876 565555667778888887765544444442 233334555555555443
No 202
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.13 E-value=0.026 Score=36.89 Aligned_cols=66 Identities=15% Similarity=0.210 Sum_probs=49.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcC-cCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHH
Q 038758 254 VVWNSIISAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSR 332 (354)
Q Consensus 254 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 332 (354)
.+|+.+-..|...|++++|+..|++..+.. ..++... . ...++..+...|.+.|++++|.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--~-----------------~a~~~~~lg~~~~~~g~~~~A~ 66 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHP--D-----------------TANTLNNLGECYYRLGDYEEAL 66 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHH--H-----------------HHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCH--H-----------------HHHHHHHHHHHHHHcCCHHHHH
Confidence 468888999999999999999999987641 1122111 0 1345888999999999999999
Q ss_pred HHhhcC
Q 038758 333 KIFVLM 338 (354)
Q Consensus 333 ~~~~~m 338 (354)
+.+++.
T Consensus 67 ~~~~~a 72 (78)
T PF13424_consen 67 EYYQKA 72 (78)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998763
No 203
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.04 E-value=0.042 Score=43.75 Aligned_cols=168 Identities=14% Similarity=0.053 Sum_probs=85.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCc--CCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCC
Q 038758 38 GMYNVLGYYEEIVNLFYLMIDKGVR--PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR 115 (354)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 115 (354)
..+...|++++|...|+.+...... -.....-.+..++.+.|+++.|...++.+.+.-..-...-+...+.+.+....
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence 3456789999999999999876321 11223456677788899999999999998875211111122333333332211
Q ss_pred h-------------hHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHH
Q 038758 116 M-------------EITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTN 182 (354)
Q Consensus 116 ~-------------~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 182 (354)
. ..|...| ..++.-|=.+.-.++|...+..+...=...--.+..-|.+.|.+..|..
T Consensus 93 ~~~~~~~~~D~~~~~~A~~~~----------~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 93 IPGILRSDRDQTSTRKAIEEF----------EELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHHHH-TT---HHHHHHHHHH----------HHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred CccchhcccChHHHHHHHHHH----------HHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 1 1222222 2333333333334444444333322111111124566788888888888
Q ss_pred HHHHHHhhhcCCCCCcchHHHHHHHhhhhcCcc
Q 038758 183 LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215 (354)
Q Consensus 183 ~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~ 215 (354)
-++.+.+.=.+..........++.++.+.|..+
T Consensus 163 r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 163 RFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 888886211222222334566677777777655
No 204
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.53 Score=42.09 Aligned_cols=237 Identities=9% Similarity=0.006 Sum_probs=142.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhh------
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP------ 105 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~------ 105 (354)
-+-.+.++.-+..+++.+.+-+....... -+..-++..-.++...|.+..+...-+...+.|.. ...-|+.
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~ 302 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALA 302 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHH
Confidence 45556677777788888888888777654 34444555666677878777777666665555421 1112222
Q ss_pred -HHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCC--CChh-hhHHHHHHHHhCCChhHHH
Q 038758 106 -LLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLV-SWNAMLAGYALGGFREEVT 181 (354)
Q Consensus 106 -li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~ 181 (354)
+..+|.+.++++.+...|.+.-..-.+ -....+....+++.+..+...- |... -...-.+.+.+.|++..|.
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt----~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av 378 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRT----PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAV 378 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcC----HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHH
Confidence 334566677888888877764100000 1223333445555555444332 3221 1222366788999999999
Q ss_pred HHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHH
Q 038758 182 NLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261 (354)
Q Consensus 182 ~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~ 261 (354)
+.|.++. ... +-|...|...--+|.+.+.+..|..=-+...+.. ++....|.-=..
T Consensus 379 ~~YteAI--kr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~---------------------p~~~kgy~RKg~ 434 (539)
T KOG0548|consen 379 KHYTEAI--KRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD---------------------PNFIKAYLRKGA 434 (539)
T ss_pred HHHHHHH--hcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---------------------chHHHHHHHHHH
Confidence 9999997 444 5567889999999999998877766444433332 122223332233
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhcc
Q 038758 262 AFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301 (354)
Q Consensus 262 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 301 (354)
++....++++|++.|.+-.+. .|+..-+..-+.-|...
T Consensus 435 al~~mk~ydkAleay~eale~--dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 435 ALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHH
Confidence 344455788888888887755 47766666666655553
No 205
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.96 E-value=0.71 Score=40.11 Aligned_cols=182 Identities=12% Similarity=0.051 Sum_probs=96.9
Q ss_pred HHHHHHHhcCchhHHHHHhccCCCC-------ChhhhHHHHHHHHh---CCChhHHHHHHHHHHhhhcCCCCCcchHHHH
Q 038758 135 SLIDFYAKCRYLKVSHCKFSKIKQK-------DLVSWNAMLAGYAL---GGFREEVTNLLDEMEMIQTDMQPNTISLSGV 204 (354)
Q Consensus 135 ~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~l 204 (354)
.++-+|....+++...++.+.+..+ ....-....-++.+ .|+.++|++++..+. ...-.++..||..+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l--~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVL--ESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHH--hccCCCChHHHHHH
Confidence 4444688888888888888888763 11111233445556 789999999999965 66667777788877
Q ss_pred HHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHH--HHHHHHhcCCHHHHHHHHHHHHHc
Q 038758 205 LAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNS--IISAFVRSGQVVDALDLLRDVIVA 282 (354)
Q Consensus 205 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~~ 282 (354)
...|-..- .+.+.. .....++|+..|.+.-.-+...|+- +...+...|...+...-.+++.
T Consensus 224 GRIyKD~~------------~~s~~~---d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~-- 286 (374)
T PF13281_consen 224 GRIYKDLF------------LESNFT---DRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIG-- 286 (374)
T ss_pred HHHHHHHH------------HHcCcc---chHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHH--
Confidence 76654220 000000 1122455555555443333233321 1112222332111111111111
Q ss_pred CcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCCCCcccH
Q 038758 283 NVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKNLVSW 346 (354)
Q Consensus 283 g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 346 (354)
.+++.++ .+.|..+ -..+-..+.++.++..-.|+.++|.+..+.|.+.+...|
T Consensus 287 ------~~l~~ll---g~kg~~~--~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 287 ------VKLSSLL---GRKGSLE--KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ------HHHHHHH---Hhhcccc--ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 1111111 1222211 113444567888999999999999999999887444444
No 206
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=95.91 E-value=0.0038 Score=46.61 Aligned_cols=84 Identities=12% Similarity=0.139 Sum_probs=46.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCC
Q 038758 36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR 115 (354)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 115 (354)
+|+.+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++ ..+..-...++..+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcch
Confidence 345555666666666666666665544555566666666666666565555554 1112333455566666666
Q ss_pred hhHHHHHHHhh
Q 038758 116 MEITSGLFEEM 126 (354)
Q Consensus 116 ~~~a~~~~~~~ 126 (354)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66665554443
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.91 E-value=0.047 Score=35.07 Aligned_cols=57 Identities=12% Similarity=0.153 Sum_probs=43.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhc
Q 038758 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIK 95 (354)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 95 (354)
..|.+.+++++|.++++.+...+ +.+...+......+...|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 46778888888888888888764 3355566677777888888888888888888653
No 208
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.84 E-value=0.06 Score=44.60 Aligned_cols=97 Identities=9% Similarity=-0.041 Sum_probs=59.0
Q ss_pred hhHHHHHHHhcCchhHHHHHhccCCC--CCh----hhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHH
Q 038758 133 NNSLIDFYAKCRYLKVSHCKFSKIKQ--KDL----VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206 (354)
Q Consensus 133 ~~~li~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~ 206 (354)
|...+..+.+.|++++|...|+.+.+ |+. ..+-.+...|...|++++|...|+.+...-.+-......+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44444444556778888877777763 443 355567777888888888888888875201111112223333444
Q ss_pred HhhhhcCccccchhhhHhhhhcc
Q 038758 207 ACAQVKGVKLGKAIHGYVLRHHI 229 (354)
Q Consensus 207 ~~~~~~~~~~a~~~~~~~~~~~~ 229 (354)
.+...|+.+.|...++.+.+...
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCc
Confidence 56677777888777777766543
No 209
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.12 Score=42.79 Aligned_cols=112 Identities=13% Similarity=0.089 Sum_probs=79.4
Q ss_pred CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhh---cCccccchhhhHhhhhcccccccc
Q 038758 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV---KGVKLGKAIHGYVLRHHIHLSTAC 235 (354)
Q Consensus 159 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~ 235 (354)
.|...|-.|-..|...|+.+.|..-|....+ ..|-.| ..+..+-.++... ....++..+++++.+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r-L~g~n~--~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D------- 223 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALR-LAGDNP--EILLGLAEALYYQAGQQMTAKARALLRQALALD------- 223 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHH-hCCCCH--HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-------
Confidence 3778899999999999999999999998863 333333 3444444443332 24556777777777664
Q ss_pred chhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHH
Q 038758 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296 (354)
Q Consensus 236 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 296 (354)
.-|+.+-..|-..+...|++.+|...|+.|.+.. |.......+|+
T Consensus 224 --------------~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 224 --------------PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred --------------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 3466666777788999999999999999999763 44444444444
No 210
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.81 E-value=0.15 Score=46.89 Aligned_cols=120 Identities=9% Similarity=0.034 Sum_probs=81.1
Q ss_pred CChhHHHHHHHHHHhCCCcCCc-ccHHHHHHHHhccC--------ChhhHHHHHHHHHHh-ccCCCceehhhHHHHHHhc
Q 038758 44 GYYEEIVNLFYLMIDKGVRPDH-FVCPKVYKACSELK--------DYRVGKDVYDYMISI-KFEGNACVKRPLLDLFIKC 113 (354)
Q Consensus 44 ~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~--------~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~ 113 (354)
++.+.|.++|++..+. .|+- ..|..+..++.... +...+.+..+..... ..+.+...|.++.-.....
T Consensus 356 ~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~ 433 (517)
T PRK10153 356 KSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVK 433 (517)
T ss_pred HHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhc
Confidence 3477999999999986 4554 33444333332211 122333333332222 1234556787777777788
Q ss_pred CChhHHHHHHHhh---ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CChhhhH
Q 038758 114 GRMEITSGLFEEM---DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSWN 165 (354)
Q Consensus 114 g~~~~a~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~ 165 (354)
|++++|...+++. .|+...|..+...+...|+.++|...+++... |...+|.
T Consensus 434 g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 434 GKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLY 490 (517)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHH
Confidence 9999999999998 66778889999999999999999999988764 5545553
No 211
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.76 E-value=0.017 Score=37.84 Aligned_cols=26 Identities=19% Similarity=0.080 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHhCCChhHHHHHHHHH
Q 038758 162 VSWNAMLAGYALGGFREEVTNLLDEM 187 (354)
Q Consensus 162 ~~~~~li~~~~~~~~~~~a~~~~~~m 187 (354)
.+++.+...+...|++++|++.+++.
T Consensus 47 ~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 47 NTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455555555555555555555543
No 212
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.68 E-value=0.077 Score=43.70 Aligned_cols=101 Identities=12% Similarity=0.131 Sum_probs=69.0
Q ss_pred HHhCCChhHHHHHHHHHHhhhcCCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccC
Q 038758 171 YALGGFREEVTNLLDEMEMIQTDMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLS 249 (354)
Q Consensus 171 ~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 249 (354)
+.+.+++++|+..|.+.. .+.|+ .+-|..--.+|++.|..+.|.+=-+..+...
T Consensus 91 ~m~~~~Y~eAv~kY~~AI----~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--------------------- 145 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI----ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--------------------- 145 (304)
T ss_pred HHHhhhHHHHHHHHHHHH----hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC---------------------
Confidence 556678888888888776 34443 4556666777887777766655443333322
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHh
Q 038758 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPAC 298 (354)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 298 (354)
+....+|..|-.+|...|++++|++.|++.++ +.|+..+|-.=+...
T Consensus 146 p~yskay~RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 146 PHYSKAYGRLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 22356788888888888999999888888874 478888877655544
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.67 E-value=0.032 Score=35.91 Aligned_cols=53 Identities=13% Similarity=0.161 Sum_probs=43.2
Q ss_pred HHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758 73 KACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
..+.+.++++.|.++++.+.+.+ +.+...+.....++.+.|++++|.+.|++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~ 55 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERA 55 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 45678888889999998888875 557777888888888888888888888775
No 214
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=95.62 E-value=0.2 Score=48.21 Aligned_cols=175 Identities=12% Similarity=0.088 Sum_probs=117.0
Q ss_pred hhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHh
Q 038758 46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEE 125 (354)
Q Consensus 46 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 125 (354)
...++..|-+.....+. =...|..|...|+..-+...|.+.|+...+.+ .-+..........|+...+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 55555555555443311 12347788888887778888888888877654 44566778888889999999998888443
Q ss_pred hcc------ccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCC
Q 038758 126 MDQ------DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP 196 (354)
Q Consensus 126 ~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p 196 (354)
... ...-|-...-.|.+.++..+|...|+...+ .|...|..+..+|.++|++..|.++|.... -++|
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs----~LrP 627 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS----LLRP 627 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhH----hcCc
Confidence 311 112222344456777888888888877664 366778889999999999999999998775 3455
Q ss_pred CcchHHHHHHH--hhhhcCccccchhhhHhhhh
Q 038758 197 NTISLSGVLAA--CAQVKGVKLGKAIHGYVLRH 227 (354)
Q Consensus 197 ~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~ 227 (354)
+. +|...-.+ -+..|..+++...++.+...
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 43 33333222 35567777777777666543
No 215
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.56 E-value=0.5 Score=34.07 Aligned_cols=135 Identities=13% Similarity=0.067 Sum_probs=74.1
Q ss_pred HHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCcee---hhhHHHHHHhcCCh
Q 038758 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV---KRPLLDLFIKCGRM 116 (354)
Q Consensus 40 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~ 116 (354)
+...|..++..+++.+.... .+..-+|.+|--....-+-+. +++-+...|-..|... ...++.+|+..|..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~y---vv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~ 85 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDY---VVETLDSIGKIFDISKCGNLKRVIECYAKRNKL 85 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHH---HHHHHHHHGGGS-GGG-S-THHHHHHHHHTT--
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhH---HHHHHHHHhhhcCchhhcchHHHHHHHHHhcch
Confidence 44568888888888887764 355567777755544444444 4444444454444432 23345555555543
Q ss_pred hHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCC---CCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcC
Q 038758 117 EITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK---QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193 (354)
Q Consensus 117 ~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 193 (354)
.+ .....++.+..+|.-+.-.++...+. ++++...-.+..||.+.|+..++.+++.+.- +.|
T Consensus 86 se-------------~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC--ekG 150 (161)
T PF09205_consen 86 SE-------------YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEAC--EKG 150 (161)
T ss_dssp -H-------------HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH--HTT
T ss_pred HH-------------HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH--Hhc
Confidence 33 23345566667777777777776654 3556666666777777777777777777776 666
Q ss_pred CC
Q 038758 194 MQ 195 (354)
Q Consensus 194 ~~ 195 (354)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 54
No 216
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.54 E-value=0.94 Score=41.72 Aligned_cols=255 Identities=12% Similarity=0.102 Sum_probs=125.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHH---------HHHHhCCCcCCcccHHHHHHHHhccCChhhH--HHHHHHHHHhccCCCc
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLF---------YLMIDKGVRPDHFVCPKVYKACSELKDYRVG--KDVYDYMISIKFEGNA 100 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~---------~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a--~~~~~~m~~~~~~~~~ 100 (354)
.+.+=+..|...|.+++|.++- +.+-.. ..+.-.++..=.+|.+-++..-. .--+++++++|-.|+.
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~ 635 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPND 635 (1081)
T ss_pred cccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchH
Confidence 4445555667777777776542 111111 12334455555666666655432 2334455666655665
Q ss_pred eehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCC--------------CChhhhHH
Q 038758 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--------------KDLVSWNA 166 (354)
Q Consensus 101 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------------~~~~~~~~ 166 (354)
.. +...++-.|.+.+|-++|.+-... |..+.+|...+.++.|.++...... .|+.-=.+
T Consensus 636 iL---lA~~~Ay~gKF~EAAklFk~~G~e----nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePka 708 (1081)
T KOG1538|consen 636 LL---LADVFAYQGKFHEAAKLFKRSGHE----NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKA 708 (1081)
T ss_pred HH---HHHHHHhhhhHHHHHHHHHHcCch----hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHH
Confidence 43 345567777888888777764111 2233444444555555554433221 11111123
Q ss_pred HHHHHHhCCChhHHHHHHH-----HHHhhhcCC---CCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchh
Q 038758 167 MLAGYALGGFREEVTNLLD-----EMEMIQTDM---QPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFV 238 (354)
Q Consensus 167 li~~~~~~~~~~~a~~~~~-----~m~~~~~~~---~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 238 (354)
....+...|+.++|..+.- +|.- +-+- ..+..+...+-..+.+...+..|-++|..+-...
T Consensus 709 AAEmLiSaGe~~KAi~i~~d~gW~d~li-dI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~k---------- 777 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEICGDHGWVDMLI-DIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLK---------- 777 (1081)
T ss_pred HHHHhhcccchhhhhhhhhcccHHHHHH-HHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHH----------
Confidence 3344555677666655432 1110 1111 1223344444444555666666666665544322
Q ss_pred HHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHH
Q 038758 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNAL 318 (354)
Q Consensus 239 ~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~l 318 (354)
.++..+...+++.+|..+-++..+ +.||... ..-+-++... -|...
T Consensus 778 -------------------siVqlHve~~~W~eAFalAe~hPe--~~~dVy~--pyaqwLAE~D-----------rFeEA 823 (1081)
T KOG1538|consen 778 -------------------SLVQLHVETQRWDEAFALAEKHPE--FKDDVYM--PYAQWLAEND-----------RFEEA 823 (1081)
T ss_pred -------------------HHhhheeecccchHhHhhhhhCcc--ccccccc--hHHHHhhhhh-----------hHHHH
Confidence 345555666666666666655542 2343321 1111111111 14445
Q ss_pred HHHHHhcCChhHHHHHhhcCCC
Q 038758 319 IDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 319 i~~~~~~g~~~~A~~~~~~m~~ 340 (354)
-.+|.+.|+..+|.++++.+..
T Consensus 824 qkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 824 QKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHHHhcchHHHHHHHHHhhh
Confidence 5677777777777777777654
No 217
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.54 E-value=0.049 Score=34.53 Aligned_cols=62 Identities=19% Similarity=0.306 Sum_probs=52.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccC-ChhhHHHHHHHHHHh
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK-DYRVGKDVYDYMISI 94 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~ 94 (354)
+|..+-..+...|++++|+..|++..+.+ +-+...|..+..++...| ++++|.+.++...+.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 57778888999999999999999999875 335667888888889999 799999999988764
No 218
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.51 E-value=0.06 Score=43.97 Aligned_cols=85 Identities=14% Similarity=0.076 Sum_probs=69.8
Q ss_pred hHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccC----------------ChhhHHHHHHH
Q 038758 32 NWTSMMGMYNV-----LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK----------------DYRVGKDVYDY 90 (354)
Q Consensus 32 ~y~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------------~~~~a~~~~~~ 90 (354)
+|-..+..|.. .+..+-....++.|.+-|+.-|..+|+.||..+-+.. +-+-+.+++++
T Consensus 69 sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeq 148 (406)
T KOG3941|consen 69 SFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQ 148 (406)
T ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHH
Confidence 55566666653 4677888889999999999999999999998875433 22347899999
Q ss_pred HHHhccCCCceehhhHHHHHHhcCCh
Q 038758 91 MISIKFEGNACVKRPLLDLFIKCGRM 116 (354)
Q Consensus 91 m~~~~~~~~~~~~~~li~~~~~~g~~ 116 (354)
|...|+-||..+-..|++++.+.|-.
T Consensus 149 ME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 149 MEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHcCCCCchHHHHHHHHHhcccccc
Confidence 99999999999999999999988764
No 219
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.36 E-value=0.78 Score=33.91 Aligned_cols=127 Identities=10% Similarity=0.090 Sum_probs=85.3
Q ss_pred cHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCch
Q 038758 67 VCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL 146 (354)
Q Consensus 67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~ 146 (354)
....++..+...+.......+++.+.+.+ ..+...++.++..|++.++ +...+.+.. ..+.......+..|.+.+.+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~-~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN-KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh-ccccCCHHHHHHHHHHcCcH
Confidence 35677788887888999999999999887 5778889999999998754 455555552 12334444577788888888
Q ss_pred hHHHHHhccCCCCChhhhHHHHHHHHhC-CChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhh
Q 038758 147 KVSHCKFSKIKQKDLVSWNAMLAGYALG-GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209 (354)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~ 209 (354)
+++.-++.++.. |...+..+.+. ++++.|.+...+-. +...|..++..+.
T Consensus 86 ~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~~--------~~~lw~~~~~~~l 136 (140)
T smart00299 86 EEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQN--------NPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhCC--------CHHHHHHHHHHHH
Confidence 888888877643 22233333334 67777777666421 3445666665544
No 220
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.31 E-value=1.7 Score=37.59 Aligned_cols=163 Identities=12% Similarity=0.008 Sum_probs=84.7
Q ss_pred hHHHHHHHHHhc--CChhHHHHHHHHHHhCCCcCCcccHHHHHHHH--hccCChhhHHHHHHHHHHhccCCCceehhhHH
Q 038758 32 NWTSMMGMYNVL--GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKAC--SELKDYRVGKDVYDYMISIKFEGNACVKRPLL 107 (354)
Q Consensus 32 ~y~~li~~~~~~--~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 107 (354)
-|..|-.++.-. |+-..|.+.-.+-.+. +.-|......|+.+- .-.|+++.|.+-|+.|.... .........|.
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLy 161 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGLY 161 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHHH
Confidence 455554444433 4444454444443321 333444444444332 24566666666666665421 11111223333
Q ss_pred HHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCC--------------------------
Q 038758 108 DLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK-------------------------- 157 (354)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-------------------------- 157 (354)
-.--+.|+.+.|..+-++. +.-.-.+.+.+...|..|+++.|+++.+.-+
T Consensus 162 leAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence 3334456666655555544 3333444556666666666666666654332
Q ss_pred -----------------CCChhh-hHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCc
Q 038758 158 -----------------QKDLVS-WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT 198 (354)
Q Consensus 158 -----------------~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~ 198 (354)
.||..- --.-..++.+.|+..++-.+++.+- +..-.|+.
T Consensus 242 dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aW--K~ePHP~i 298 (531)
T COG3898 242 DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAW--KAEPHPDI 298 (531)
T ss_pred cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHH--hcCCChHH
Confidence 123222 1233467889999999999999998 66666653
No 221
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.29 E-value=0.39 Score=43.65 Aligned_cols=125 Identities=12% Similarity=-0.013 Sum_probs=77.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC-CcCCc-----ccHHHHHHHHhc----cCChhhHHHHHHHHHHhccCCCce
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKG-VRPDH-----FVCPKVYKACSE----LKDYRVGKDVYDYMISIKFEGNAC 101 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~ 101 (354)
....+++..+-.|+-+..++.+.+-.+.+ +.-.. -.|+..+..++. ..+.+.|.++++.+.++ -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 66777778888899999999998876542 22111 234444444443 34677888888888865 56655
Q ss_pred ehhh-HHHHHHhcCChhHHHHHHHhhccc--------cchhhHHHHHHHhcCchhHHHHHhccCCC
Q 038758 102 VKRP-LLDLFIKCGRMEITSGLFEEMDQD--------FLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158 (354)
Q Consensus 102 ~~~~-li~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 158 (354)
.|.- -.+.+...|++++|.+.|++.... ...+--+.-.+.-.+++++|.+.|..+.+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 5533 335566778999999888865211 11222344445556666666666666654
No 222
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.43 Score=39.58 Aligned_cols=93 Identities=9% Similarity=0.069 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHh---ccCChhhHHHHHHHHHHhccCCCceehhhHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACS---ELKDYRVGKDVYDYMISIKFEGNACVKRPLLD 108 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 108 (354)
.|-.|-.+|...|+++.|..-|.+..+.. .+|...+..+..++. ....-.++.++|+++.+.. +-|+.+...|..
T Consensus 158 gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~lLA~ 235 (287)
T COG4235 158 GWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSLLAF 235 (287)
T ss_pred hHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHHHHH
Confidence 55666666666666666666666655432 223333333333322 2223445556666655543 444445555555
Q ss_pred HHHhcCChhHHHHHHHhh
Q 038758 109 LFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 109 ~~~~~g~~~~a~~~~~~~ 126 (354)
.+...|++.+|...|+.|
T Consensus 236 ~afe~g~~~~A~~~Wq~l 253 (287)
T COG4235 236 AAFEQGDYAEAAAAWQML 253 (287)
T ss_pred HHHHcccHHHHHHHHHHH
Confidence 555566666665555555
No 223
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.21 E-value=0.31 Score=38.77 Aligned_cols=167 Identities=13% Similarity=0.031 Sum_probs=78.0
Q ss_pred HHHHhcCchhHHHHHhccCCC--CCh----hhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhh
Q 038758 138 DFYAKCRYLKVSHCKFSKIKQ--KDL----VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211 (354)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~ 211 (354)
..+...|++++|.+.|+.+.. |++ ...-.+..++.+.|+++.|...++.... ...-.| ..-+...+.+.+..
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~-~yP~~~-~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK-LYPNSP-KADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-H-TT-T-THHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCCc-chhhHHHHHHHHHH
Confidence 344555666666666666553 221 2334566777788888888888887752 111111 12233333332211
Q ss_pred c-------------CccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 038758 212 K-------------GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRD 278 (354)
Q Consensus 212 ~-------------~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 278 (354)
. ...+|...++.+.+.-+ .+.-..+|...+..+...=...--.+..-|.+.|.+..|..-++.
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP----~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~ 166 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIKRYP----NSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQY 166 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHHH-T----TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHHHCc----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 1 11233333333333322 111112222111111100000111235678889999999999999
Q ss_pred HHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHH
Q 038758 279 VIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSR 332 (354)
Q Consensus 279 m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 332 (354)
+.+. -|+... .....-.++.+|.+.|..+.|.
T Consensus 167 v~~~--yp~t~~--------------------~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 167 VIEN--YPDTPA--------------------AEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHH--STTSHH--------------------HHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHH--CCCCch--------------------HHHHHHHHHHHHHHhCChHHHH
Confidence 9875 455433 1223556777777777766443
No 224
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=95.20 E-value=0.0072 Score=45.10 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=30.5
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHH
Q 038758 71 VYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFE 124 (354)
Q Consensus 71 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 124 (354)
++..+.+.+..+....+++.+.+.+...+....+.++..|++.++.+...++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 445555566666666666666655544445556666666666655555555444
No 225
>PRK15331 chaperone protein SicA; Provisional
Probab=95.10 E-value=0.29 Score=36.87 Aligned_cols=80 Identities=8% Similarity=-0.043 Sum_probs=46.2
Q ss_pred HHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHH
Q 038758 74 ACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVS 149 (354)
Q Consensus 74 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a 149 (354)
.+...|++++|..+|..+.-.+ +-+..-+..|..++-..+++++|...|... ..|..++-....+|...|+.+.|
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 3446778888888888777654 334445566777777777777777776654 22333333333444444444444
Q ss_pred HHHhc
Q 038758 150 HCKFS 154 (354)
Q Consensus 150 ~~~~~ 154 (354)
...|+
T Consensus 125 ~~~f~ 129 (165)
T PRK15331 125 RQCFE 129 (165)
T ss_pred HHHHH
Confidence 44433
No 226
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.86 E-value=0.92 Score=32.77 Aligned_cols=137 Identities=12% Similarity=0.103 Sum_probs=79.1
Q ss_pred hccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh--ccccchhhHHHHHHHhcCchhHHHHHh
Q 038758 76 SELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM--DQDFLVNNSLIDFYAKCRYLKVSHCKF 153 (354)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~ 153 (354)
.-.|.+++..++.....+.. +..-+|=+|.-....-+=+-..++++.+ ..|.. .+|++......+
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis----------~C~NlKrVi~C~ 79 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS----------KCGNLKRVIECY 79 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG----------G-S-THHHHHHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch----------hhcchHHHHHHH
Confidence 34577777788877776542 2333333333333333334444444443 11211 233333333333
Q ss_pred ccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcc
Q 038758 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI 229 (354)
Q Consensus 154 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 229 (354)
-.+. .++...+..+....++|+-+.-.+++.++. + +-.|++...-.+..||.+.|+..++.+++.+.-+.|+
T Consensus 80 ~~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~--k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 80 AKRN-KLSEYVDLALDILVKQGKKDQLDKIYNELK--K-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH--------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHh--h-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3322 355667788999999999999999999985 3 6677888888999999999999999999998888886
No 227
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.84 E-value=0.54 Score=41.31 Aligned_cols=139 Identities=11% Similarity=0.120 Sum_probs=71.2
Q ss_pred ccHHHHHHHHhccCChhhHHHHHHHHHHhc-cCCCceehhhHHHHHHhcCChhHHHHHHHhh---ccccchh-hHHHHHH
Q 038758 66 FVCPKVYKACSELKDYRVGKDVYDYMISIK-FEGNACVKRPLLDLFIKCGRMEITSGLFEEM---DQDFLVN-NSLIDFY 140 (354)
Q Consensus 66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~-~~li~~~ 140 (354)
..|...|....+..-++.|..+|-...+.| +.+++.+++++|..++ .|+...|.++|+-= -+|...| +..+..+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 345555555555555666666666665555 3455555555555443 34445555555532 2333333 3445555
Q ss_pred HhcCchhHHHHHhccCCC---CC--hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhh
Q 038758 141 AKCRYLKVSHCKFSKIKQ---KD--LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209 (354)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~---~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~ 209 (354)
.+.++-+.|..+|+.-.+ .+ ...|..+|.-=..-|+...+..+=+.|. .+.|...+...+.+-|.
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~----e~~pQen~~evF~Sry~ 546 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR----ELVPQENLIEVFTSRYA 546 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH----HHcCcHhHHHHHHHHHh
Confidence 555666666666653322 11 3346666665556666665555555554 23444444444444443
No 228
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.83 E-value=1.4 Score=34.01 Aligned_cols=102 Identities=11% Similarity=0.021 Sum_probs=62.1
Q ss_pred CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCC-CCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccch
Q 038758 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ-PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGF 237 (354)
Q Consensus 159 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 237 (354)
|++..--.|..+..+.|++.+|...|++. ..|+- -|....-.+.++....+++..+...++.+.+....
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qa---lsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa------- 156 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQA---LSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA------- 156 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHH---hccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc-------
Confidence 45555556677777777777777777777 34443 34445555556666666666666666666554421
Q ss_pred hHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038758 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282 (354)
Q Consensus 238 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (354)
..+..+.-.+-+.+...|+..+|+.-|+...+.
T Consensus 157 ------------~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 157 ------------FRSPDGHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred ------------cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 112233344556677777777777777777654
No 229
>PRK15331 chaperone protein SicA; Provisional
Probab=94.79 E-value=0.28 Score=36.93 Aligned_cols=86 Identities=10% Similarity=0.059 Sum_probs=67.4
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhH
Q 038758 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEI 118 (354)
Q Consensus 39 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 118 (354)
.+-..|++++|..+|.-+.-.+. -|..-|..|...+-..+++++|.+.|...-..+ +-|+..+--...+|...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHH
Confidence 34578999999999999987542 233335555556667889999999999887765 4566667778899999999999
Q ss_pred HHHHHHhh
Q 038758 119 TSGLFEEM 126 (354)
Q Consensus 119 a~~~~~~~ 126 (354)
|...|+..
T Consensus 124 A~~~f~~a 131 (165)
T PRK15331 124 ARQCFELV 131 (165)
T ss_pred HHHHHHHH
Confidence 99988875
No 230
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.71 E-value=1.2 Score=41.41 Aligned_cols=244 Identities=10% Similarity=0.017 Sum_probs=126.8
Q ss_pred cCCcccHHHHHHHHhccCChhhHHHHHHHHHHh-ccCCCceehhh----H--HHHHHhcCChhHHHHHHHhhccccchhh
Q 038758 62 RPDHFVCPKVYKACSELKDYRVGKDVYDYMISI-KFEGNACVKRP----L--LDLFIKCGRMEITSGLFEEMDQDFLVNN 134 (354)
Q Consensus 62 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~----l--i~~~~~~g~~~~a~~~~~~~~~~~~~~~ 134 (354)
.|-...|..+.......-.++.|++.|-..... |++.-...-+. + ...-+-.|++++|+++|-++... .
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr----D 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR----D 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh----h
Confidence 466777887776666666666676666554432 22110000000 0 11223358888888888877332 2
Q ss_pred HHHHHHHhcCchhHHHHHhccCCCC-----ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhh
Q 038758 135 SLIDFYAKCRYLKVSHCKFSKIKQK-----DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACA 209 (354)
Q Consensus 135 ~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~ 209 (354)
..|..+.+.|++-.+.++++.-... -...|+.+-..+.....|++|.+.|..-. - -...+.++.
T Consensus 765 LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~-----~------~e~~~ecly 833 (1189)
T KOG2041|consen 765 LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG-----D------TENQIECLY 833 (1189)
T ss_pred hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----c------hHhHHHHHH
Confidence 3466777888888888877765431 12457777788888888888888776543 1 123344555
Q ss_pred hhcCccccchhhhHhhhhcccccc------ccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038758 210 QVKGVKLGKAIHGYVLRHHIHLST------ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283 (354)
Q Consensus 210 ~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 283 (354)
+..++++.+.+-..+.+...-.+. +.|.-++|.+.|-+...|- .-+..|....++.+|.++-++..
T Consensus 834 ~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~--- 905 (1189)
T KOG2041|consen 834 RLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQ--- 905 (1189)
T ss_pred HHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhcc---
Confidence 555444444443333322211110 3344444444443333332 23445555556666665554443
Q ss_pred cCCCHhhHHHHHH-HhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 284 VKPNTVTIVSVLP-ACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 284 ~~p~~~t~~~li~-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
-|...|...--. -+...++ ..-.|..+-+.|++-+|-+++.+|.+
T Consensus 906 -l~qv~tliak~aaqll~~~~-----------~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 906 -LPQVQTLIAKQAAQLLADAN-----------HMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred -chhHHHHHHHHHHHHHhhcc-----------hHHHHHHhhhcccchhHHHHHHHHhH
Confidence 233322111000 0001111 22346677778888888888877765
No 231
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.50 E-value=2.9 Score=36.26 Aligned_cols=283 Identities=14% Similarity=0.033 Sum_probs=164.4
Q ss_pred hhHHHHHHHHHHhCCCcCCcccHHHHHHHHh--ccCChhhHHHHHHHHHHhccCCCceehhhHHH--HHHhcCChhHHHH
Q 038758 46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACS--ELKDYRVGKDVYDYMISIKFEGNACVKRPLLD--LFIKCGRMEITSG 121 (354)
Q Consensus 46 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~--~~~~~g~~~~a~~ 121 (354)
+..+...|..-+.. ..|..|-.++. ..||-..|.+.-.+-.+. +.-|..-.-.|+. +-.-.|+++.|.+
T Consensus 69 P~t~~Ryfr~rKRd------rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~ 141 (531)
T COG3898 69 PYTARRYFRERKRD------RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARK 141 (531)
T ss_pred cHHHHHHHHHHHhh------hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHH
Confidence 33444555544322 23555555554 456777777766554322 2333333333332 2334699999999
Q ss_pred HHHhhccccchhhH----HHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCC
Q 038758 122 LFEEMDQDFLVNNS----LIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDM 194 (354)
Q Consensus 122 ~~~~~~~~~~~~~~----li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 194 (354)
-|+.|-.+..+--. |.-.--+.|+.+.|...-+..-. | -...+...+...+..|+|+.|+++++.-+. ..-+
T Consensus 142 kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~-~~vi 220 (531)
T COG3898 142 KFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRA-AKVI 220 (531)
T ss_pred HHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHH-HHhh
Confidence 99999666655433 33333466888888877765543 3 245678899999999999999999987763 3445
Q ss_pred CCCcc--hHHHHHHHhhhh---cCccccchhhhHhhhhcccccc----------ccchhHHHHHHhcccC--CCCcchHH
Q 038758 195 QPNTI--SLSGVLAACAQV---KGVKLGKAIHGYVLRHHIHLST----------ACGFVICSCSVFNQLS--TRDVVVWN 257 (354)
Q Consensus 195 ~p~~~--t~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~--~~~~~~~~ 257 (354)
.++.. .-..++.+-... .+...+...-.+..+...+..+ +.|+..++-.+++.+- .|....+.
T Consensus 221 e~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~ 300 (531)
T COG3898 221 EKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL 300 (531)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH
Confidence 55532 223333332211 2333444443333333222221 5566666666666554 33333332
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-CcCCCH-hhHHHHHHHhhccCcccCc---------cccchhHHHHHHHHHH-hc
Q 038758 258 SIISAFVRSGQVVDALDLLRDVIVA-NVKPNT-VTIVSVLPACLKLAALPQG---------LGTGSFVWNALIDMYG-RC 325 (354)
Q Consensus 258 ~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~-~t~~~li~~~~~~~~~~~~---------~~~~~~~~~~li~~~~-~~ 325 (354)
+..+.+.|+ .+..-+++..+. .++||. .+...+..+-...|++..+ ..|....|..|.+.-. ..
T Consensus 301 --lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAet 376 (531)
T COG3898 301 --LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAET 376 (531)
T ss_pred --HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhcc
Confidence 222334444 455555554432 345654 5566677777788887665 7788888888877655 45
Q ss_pred CChhHHHHHhhcCCC
Q 038758 326 GAIQKSRKIFVLMPH 340 (354)
Q Consensus 326 g~~~~A~~~~~~m~~ 340 (354)
|+-.++...+-+-.+
T Consensus 377 GDqg~vR~wlAqav~ 391 (531)
T COG3898 377 GDQGKVRQWLAQAVK 391 (531)
T ss_pred CchHHHHHHHHHHhc
Confidence 999999999877665
No 232
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.22 E-value=1.4 Score=35.78 Aligned_cols=58 Identities=12% Similarity=0.030 Sum_probs=37.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhhhcCCCCCc---chHHHHHHHhhhhcCccccchhhhHhhhh
Q 038758 167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNT---ISLSGVLAACAQVKGVKLGKAIHGYVLRH 227 (354)
Q Consensus 167 li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 227 (354)
+..-|.+.|.+..|..-+++|. +. .+-+. ..+-.+..+|...|-.++|.+.-..+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~--e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVL--EN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHH--hc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 3455788888888888888886 33 22222 33556667777888777777765554443
No 233
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.17 E-value=0.53 Score=38.51 Aligned_cols=93 Identities=11% Similarity=0.033 Sum_probs=69.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCc--CCcccHHHHHHHHhccCChhhHHHHHHHHHHhc-cCC-CceehhhHHH
Q 038758 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVR--PDHFVCPKVYKACSELKDYRVGKDVYDYMISIK-FEG-NACVKRPLLD 108 (354)
Q Consensus 33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~li~ 108 (354)
|+.-+. +.++|++..|.+.|....+.... -....+-.|...+...|+++.|..+|..+.+.- -.| -+..+-.|..
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 555555 34677799999999999887522 233346778899999999999999999988752 122 2356677778
Q ss_pred HHHhcCChhHHHHHHHhh
Q 038758 109 LFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 109 ~~~~~g~~~~a~~~~~~~ 126 (354)
+..+.|+.+.|..+|+++
T Consensus 224 ~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 224 SLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHhcCHHHHHHHHHHH
Confidence 888889999999888876
No 234
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.09 E-value=1 Score=40.53 Aligned_cols=158 Identities=14% Similarity=0.088 Sum_probs=103.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChh
Q 038758 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRME 117 (354)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 117 (354)
....-+++++.+....+.-.-.. .......+.++..+.+.|..+.|.++-..-. .-.....+.|+++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence 44456788998877775211111 1124448888888899999999988754432 3356678999999
Q ss_pred HHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC
Q 038758 118 ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN 197 (354)
Q Consensus 118 ~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~ 197 (354)
.|.++-++.. +...|..|.+...+.|+++-|++.|++... |..|+-.|.-.|+.++..++.+... ..|
T Consensus 336 ~A~~~a~~~~-~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~--~~~---- 403 (443)
T PF04053_consen 336 IALEIAKELD-DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAE--ERG---- 403 (443)
T ss_dssp HHHHHCCCCS-THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHH--HTT----
T ss_pred HHHHHHHhcC-cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHH--Hcc----
Confidence 9999888764 666999999999999999999999998864 4556666777888887777777665 333
Q ss_pred cchHHHHHHHhhhhcCccccchhhh
Q 038758 198 TISLSGVLAACAQVKGVKLGKAIHG 222 (354)
Q Consensus 198 ~~t~~~ll~~~~~~~~~~~a~~~~~ 222 (354)
-++....++.-.|+.++..+++.
T Consensus 404 --~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 404 --DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp ---HHHHHHHHHHHT-HHHHHHHHH
T ss_pred --CHHHHHHHHHHcCCHHHHHHHHH
Confidence 25666666666777777666654
No 235
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.81 E-value=0.79 Score=43.42 Aligned_cols=137 Identities=15% Similarity=0.158 Sum_probs=82.4
Q ss_pred HhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHH
Q 038758 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITS 120 (354)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 120 (354)
.+.|++++|.+.|-+-... +.| ..+|.-|.....+..-..+++.+.+.| ..+..--+.|+.+|.+.++.++..
T Consensus 379 y~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~g-la~~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 379 YGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKG-LANSDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred HhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcc-cccchhHHHHHHHHHHhcchHHHH
Confidence 3567777777776654422 222 234555566666666777778877777 455556677888999998888888
Q ss_pred HHHHhhccccch--hhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 121 GLFEEMDQDFLV--NNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 121 ~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
++.+........ ....+..+.+.+-.++|..+-..... +......++ -..+++++|++.+..+.
T Consensus 452 efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 452 EFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 877776422222 23455555555556666555544433 222233333 34566777777776663
No 236
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.44 E-value=8.7 Score=38.40 Aligned_cols=30 Identities=7% Similarity=0.001 Sum_probs=15.3
Q ss_pred cCCcccHHHHHHHHhccC--ChhhHHHHHHHHH
Q 038758 62 RPDHFVCPKVYKACSELK--DYRVGKDVYDYMI 92 (354)
Q Consensus 62 ~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~ 92 (354)
.|+ ...-.+|.++.+.+ .++.+.+......
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 444 33445566666655 4555555444444
No 237
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.10 E-value=5.6 Score=34.78 Aligned_cols=153 Identities=8% Similarity=0.004 Sum_probs=86.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCc--C-CcccHHHHHHHHhc---cCChhhHHHHHHHHHHhccCCCceehhhHHHH
Q 038758 36 MMGMYNVLGYYEEIVNLFYLMIDKGVR--P-DHFVCPKVYKACSE---LKDYRVGKDVYDYMISIKFEGNACVKRPLLDL 109 (354)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~~~~~--p-~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 109 (354)
++-+|....+++...++.+.+....-. + +...--...-++.+ .|+.++|.+++..+....-.+++.++..+.+.
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 333477789999999999999875211 1 11111122334445 88999999999986666557888888888777
Q ss_pred HHhc---------CChhHHHHHHHhh-ccccchhh--HHHHHHHhcCc-hh---HHHHHh---ccC------C--CCChh
Q 038758 110 FIKC---------GRMEITSGLFEEM-DQDFLVNN--SLIDFYAKCRY-LK---VSHCKF---SKI------K--QKDLV 162 (354)
Q Consensus 110 ~~~~---------g~~~~a~~~~~~~-~~~~~~~~--~li~~~~~~~~-~~---~a~~~~---~~~------~--~~~~~ 162 (354)
|-.. ...++|...|.+- ..+...|+ .+...+...|. .+ +..++- ... . ..|-.
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYW 306 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYW 306 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHH
Confidence 6432 2345555555554 22222221 12222222222 11 112221 100 0 13444
Q ss_pred hhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 163 SWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 163 ~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
-+.+++.+.+-.|+.++|.+.++.|.
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~ 332 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAF 332 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 56677788888888888888888886
No 238
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.05 E-value=4.1 Score=35.63 Aligned_cols=80 Identities=11% Similarity=0.028 Sum_probs=48.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc---CcCCCHhhHHHHHHHhhccCcccCc-------cccch---hHHHHHHHHHHhcCC
Q 038758 261 SAFVRSGQVVDALDLLRDVIVA---NVKPNTVTIVSVLPACLKLAALPQG-------LGTGS---FVWNALIDMYGRCGA 327 (354)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~t~~~li~~~~~~~~~~~~-------~~~~~---~~~~~li~~~~~~g~ 327 (354)
+-..+.|++.+|.+.|.+.+.. ++.|+...|...-....+.|.++++ ...|. ..|..-.+++.-.++
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888887642 3455556666666667777777776 23332 222222334445667
Q ss_pred hhHHHHHhhcCCC
Q 038758 328 IQKSRKIFVLMPH 340 (354)
Q Consensus 328 ~~~A~~~~~~m~~ 340 (354)
+++|.+-++...+
T Consensus 337 ~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777665543
No 239
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.97 E-value=2.2 Score=36.20 Aligned_cols=121 Identities=12% Similarity=0.144 Sum_probs=71.7
Q ss_pred hhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCC--
Q 038758 81 YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-- 158 (354)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-- 158 (354)
+++...+++.|++.|++-+..+|-+-...... .+-+..... ..+|..+|+.|++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~-~~~~~~~~~-----------------------~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEE-EEKEDYDEI-----------------------IQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHh-cccccHHHH-----------------------HHHHHHHHHHHHHhC
Confidence 56678999999999999888666553333333 122222211 3456667777764
Q ss_pred -----CChhhhHHHHHHHHhCCCh----hHHHHHHHHHHhhhcCCCCCcc--hHHHHHHHhhhhcC--ccccchhhhHhh
Q 038758 159 -----KDLVSWNAMLAGYALGGFR----EEVTNLLDEMEMIQTDMQPNTI--SLSGVLAACAQVKG--VKLGKAIHGYVL 225 (354)
Q Consensus 159 -----~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~~~~~~p~~~--t~~~ll~~~~~~~~--~~~a~~~~~~~~ 225 (354)
++..++..++.. ..++. +.+...|+.+. ..|+..+.. ..+.++..+..... ..++..+++.+.
T Consensus 134 ~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~--~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~ 209 (297)
T PF13170_consen 134 PFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLA--DAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALK 209 (297)
T ss_pred ccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHH--HhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 455667666655 33333 56677788887 778777643 33444433332222 346777778888
Q ss_pred hhcc
Q 038758 226 RHHI 229 (354)
Q Consensus 226 ~~~~ 229 (354)
+.|+
T Consensus 210 ~~~~ 213 (297)
T PF13170_consen 210 KNGV 213 (297)
T ss_pred HcCC
Confidence 8777
No 240
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.94 E-value=8.7 Score=36.55 Aligned_cols=145 Identities=11% Similarity=-0.025 Sum_probs=75.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCcC---CcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhc
Q 038758 37 MGMYNVLGYYEEIVNLFYLMIDKGVRP---DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKC 113 (354)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 113 (354)
|+-+.+.+.+++|++..+.... ..| -.......|..+...|+++.|....-.|... +..-|.-.+.-+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 4456677888888888776543 233 2344667777777788888877666665532 222333333333333
Q ss_pred CChhHHHHHHHhhc--cccchhhHHHHHHHhcCchhHHHHHhccCC------------------C--CChhhhHHHHHHH
Q 038758 114 GRMEITSGLFEEMD--QDFLVNNSLIDFYAKCRYLKVSHCKFSKIK------------------Q--KDLVSWNAMLAGY 171 (354)
Q Consensus 114 g~~~~a~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~------------------~--~~~~~~~~li~~~ 171 (354)
++....-.+.-.-+ .+..+|..++..+.. .+...-.+....-+ + .+...-..|..-|
T Consensus 437 ~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LY 515 (846)
T KOG2066|consen 437 DQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLY 515 (846)
T ss_pred cccchhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHH
Confidence 33332222211111 133444444444444 22222222221111 0 1222334477778
Q ss_pred HhCCChhHHHHHHHHHH
Q 038758 172 ALGGFREEVTNLLDEME 188 (354)
Q Consensus 172 ~~~~~~~~a~~~~~~m~ 188 (354)
...+++.+|++++-..+
T Consensus 516 l~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 516 LYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHccChHHHHHHHHhcc
Confidence 88888888888887665
No 241
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=92.80 E-value=0.23 Score=42.97 Aligned_cols=245 Identities=13% Similarity=0.003 Sum_probs=122.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCc---CCcccHHHHHHHHhccCChhhHHHHHHHHH--Hh--ccC-CCceehhhHHHH
Q 038758 38 GMYNVLGYYEEIVNLFYLMIDKGVR---PDHFVCPKVYKACSELKDYRVGKDVYDYMI--SI--KFE-GNACVKRPLLDL 109 (354)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~--~~--~~~-~~~~~~~~li~~ 109 (354)
.-+++.|+.+..+.+|+...+.|-. .=...|..|-.+|.-.+++++|.++...=. .+ |-+ -.......|-+.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 3478899999999999999888732 222346666677777778888887654321 11 111 122334445555
Q ss_pred HHhcCChhHHHHHHHh-h---------ccccchhhHHHHHHHhcCc--------------------hhHHHHHhccCCC-
Q 038758 110 FIKCGRMEITSGLFEE-M---------DQDFLVNNSLIDFYAKCRY--------------------LKVSHCKFSKIKQ- 158 (354)
Q Consensus 110 ~~~~g~~~~a~~~~~~-~---------~~~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~~~~- 158 (354)
+--.|.+++|.-.-.+ + ......+..|...|...|+ ++.|.++|.+-.+
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666543222 1 1112223333344433322 1222333321110
Q ss_pred --------CChhhhHHHHHHHHhCCChhHHHHHHHHHHh--hhcCCCC-CcchHHHHHHHhhhhcCccccchhhhHhhhh
Q 038758 159 --------KDLVSWNAMLAGYALGGFREEVTNLLDEMEM--IQTDMQP-NTISLSGVLAACAQVKGVKLGKAIHGYVLRH 227 (354)
Q Consensus 159 --------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 227 (354)
.-...|..|-+.|.-.|+++.|+..-+.=.. .+-|-+. ....+..+-+++.-.|+++.|.+.|+.-...
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1122344455555555666665443221100 0222221 2344555555556666666665555544433
Q ss_pred cccccc----------------ccchhHHHHHHhcccC---------CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038758 228 HIHLST----------------ACGFVICSCSVFNQLS---------TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282 (354)
Q Consensus 228 ~~~~~~----------------~~~~~~~a~~~~~~~~---------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (354)
-+.... -...++.|+..+.+-. .-....|=+|-.+|...|..++|+...+.-.+.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 333322 2223344443333221 113456667888999999999998877665543
No 242
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.54 E-value=0.35 Score=25.98 Aligned_cols=26 Identities=12% Similarity=0.300 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038758 255 VWNSIISAFVRSGQVVDALDLLRDVI 280 (354)
Q Consensus 255 ~~~~li~~~~~~g~~~~a~~~~~~m~ 280 (354)
+|+.|-..|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47788999999999999999999965
No 243
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.39 E-value=1 Score=37.47 Aligned_cols=49 Identities=12% Similarity=0.155 Sum_probs=41.9
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCcCCCHhhHHHHHHHh
Q 038758 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIV-----ANVKPNTVTIVSVLPAC 298 (354)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~~~li~~~ 298 (354)
+-+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+........
T Consensus 184 p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~~ 237 (280)
T COG3629 184 PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEIL 237 (280)
T ss_pred ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHh
Confidence 45788999999999999999999999999865 58999888877766663
No 244
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.36 E-value=0.93 Score=40.18 Aligned_cols=61 Identities=7% Similarity=-0.045 Sum_probs=54.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcc----cHHHHHHHHhccCChhhHHHHHHHHHHh
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHF----VCPKVYKACSELKDYRVGKDVYDYMISI 94 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 94 (354)
.|+.+-.+|.+.|++++|+..|++..+. .|+.. .|..+..+|...|++++|.+.++...+.
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8899999999999999999999998875 56643 5888999999999999999999999875
No 245
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.33 E-value=5.3 Score=32.61 Aligned_cols=168 Identities=11% Similarity=0.085 Sum_probs=95.6
Q ss_pred HHHHhcCchhHHHHHhccCCC--C----ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhh
Q 038758 138 DFYAKCRYLKVSHCKFSKIKQ--K----DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211 (354)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~ 211 (354)
..-.+.|++++|.+.|+.+.. | ...+--.++.++.+.++++.|...+++... ..+-.|| .-|..-|.+++..
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~-lyP~~~n-~dY~~YlkgLs~~ 119 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR-LYPTHPN-ADYAYYLKGLSYF 119 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCCCCCC-hhHHHHHHHHHHh
Confidence 344566777777777777764 2 223444566778899999999999988862 3333333 4466666665532
Q ss_pred cCccccchhhhHhhhhccccccccchhHHHHHHhccc----C----CCCcch-----------HH-HHHHHHHhcCCHHH
Q 038758 212 KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQL----S----TRDVVV-----------WN-SIISAFVRSGQVVD 271 (354)
Q Consensus 212 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~----~----~~~~~~-----------~~-~li~~~~~~g~~~~ 271 (354)
..++...+ ......+|..-|+.. + .+|... ++ .+.+-|.++|.+..
T Consensus 120 ~~i~~~~r--------------Dq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 120 FQIDDVTR--------------DQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred ccCCcccc--------------CHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 22211110 111111222222221 1 122211 11 23456889999999
Q ss_pred HHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC--CCc
Q 038758 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH--KNL 343 (354)
Q Consensus 272 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~ 343 (354)
|..-+++|.+. .+-+..+ ....-.+.++|-+.|-.++|.+.-+-+.. ||.
T Consensus 186 A~nR~~~v~e~-y~~t~~~---------------------~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 186 AINRFEEVLEN-YPDTSAV---------------------REALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHHhc-cccccch---------------------HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 99999999876 2222222 22355677788888888888776665554 554
No 246
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.29 E-value=4.2 Score=33.86 Aligned_cols=111 Identities=13% Similarity=0.048 Sum_probs=63.7
Q ss_pred cCChhHHHHHHHHHHh-CCCcCCcccHHHHHHHHhc-cC-ChhhHHHHHHHHHHh-ccCCCceehhhHHHHHHhcCChhH
Q 038758 43 LGYYEEIVNLFYLMID-KGVRPDHFVCPKVYKACSE-LK-DYRVGKDVYDYMISI-KFEGNACVKRPLLDLFIKCGRMEI 118 (354)
Q Consensus 43 ~~~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~-~~-~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~ 118 (354)
+....+|+.+|+.... ..+--|..+...+++.... .+ ....--++.+.+... |-.++..+...++..+++.+++..
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3445566666663322 2355677777788887765 22 333333444555432 446777788888888888888888
Q ss_pred HHHHHHhhc------cccchhhHHHHHHHhcCchhHHHHHh
Q 038758 119 TSGLFEEMD------QDFLVNNSLIDFYAKCRYLKVSHCKF 153 (354)
Q Consensus 119 a~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~ 153 (354)
..++++... .|..+|..+|+.....|+..-..++.
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 888887752 23334444444444444444333333
No 247
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.02 E-value=1.5 Score=40.12 Aligned_cols=132 Identities=13% Similarity=0.112 Sum_probs=89.8
Q ss_pred ehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHH
Q 038758 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVT 181 (354)
Q Consensus 102 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 181 (354)
..+.+...+.+.|..++|+++--. -+.-.....+.|+++.|.++..+. .+..-|..|-.+....+++..|.
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~D-------~d~rFelal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~ 686 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELSTD-------PDQRFELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLAS 686 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCCC-------hhhhhhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHH
Confidence 455667777777777777754211 122334456678888887776654 46678999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHH
Q 038758 182 NLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261 (354)
Q Consensus 182 ~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~ 261 (354)
+.|...+ -|..++-.+...|+.+....+-....+.|. .|.-.-
T Consensus 687 EC~~~a~-----------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~--------------------------~N~AF~ 729 (794)
T KOG0276|consen 687 ECFLRAR-----------DLGSLLLLYTSSGNAEGLAVLASLAKKQGK--------------------------NNLAFL 729 (794)
T ss_pred HHHHhhc-----------chhhhhhhhhhcCChhHHHHHHHHHHhhcc--------------------------cchHHH
Confidence 9888775 356666677777776655555555555553 344455
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 038758 262 AFVRSGQVVDALDLLRDV 279 (354)
Q Consensus 262 ~~~~~g~~~~a~~~~~~m 279 (354)
+|...|+++++.+++.+-
T Consensus 730 ~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 730 AYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHcCCHHHHHHHHHhc
Confidence 667778888888877543
No 248
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.89 E-value=4.8 Score=34.15 Aligned_cols=130 Identities=12% Similarity=0.154 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHhCCCcCCcccHHHHHHHHhc--c----CChhhHHHHHHHHHHhcc---CCCceehhhHHHHHHhcCCh
Q 038758 46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSE--L----KDYRVGKDVYDYMISIKF---EGNACVKRPLLDLFIKCGRM 116 (354)
Q Consensus 46 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~----~~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~ 116 (354)
+++...+++.|++.|.+-+..+|-+..-.... . ....++..+|+.|++... .++-..+..|+.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 55778899999999999888887764443333 2 246678999999998742 2344455555433 34444
Q ss_pred hHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCC-----CCC-hhhhHHHHHHHHhCCC--hhHHHHHHHHHH
Q 038758 117 EITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK-----QKD-LVSWNAMLAGYALGGF--REEVTNLLDEME 188 (354)
Q Consensus 117 ~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-----~~~-~~~~~~li~~~~~~~~--~~~a~~~~~~m~ 188 (354)
+...+. ++.+|+.+. +.| ......++...-.... ...+.++++.++
T Consensus 156 e~l~~~--------------------------~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~ 209 (297)
T PF13170_consen 156 EELAER--------------------------MEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALK 209 (297)
T ss_pred HHHHHH--------------------------HHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 433322 222333222 223 2333333333222222 347889999999
Q ss_pred hhhcCCCCCcchHHHHH
Q 038758 189 MIQTDMQPNTISLSGVL 205 (354)
Q Consensus 189 ~~~~~~~p~~~t~~~ll 205 (354)
+.|+++....|..+-
T Consensus 210 --~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 210 --KNGVKIKYMHYPTLG 224 (297)
T ss_pred --HcCCccccccccHHH
Confidence 889998888877653
No 249
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.71 E-value=1.5 Score=33.98 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCC--cccHHHHHHHHhccCChhhHHHHHHHHHHh
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPD--HFVCPKVYKACSELKDYRVGKDVYDYMISI 94 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 94 (354)
.+..+...|.+.|+++.|++.|.++.+....|. ...+-.+|+...-.+++..+...+......
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 677777888888888888888888877643332 334566777777777888777777766544
No 250
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=91.57 E-value=0.58 Score=41.42 Aligned_cols=61 Identities=2% Similarity=-0.158 Sum_probs=52.2
Q ss_pred CcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCc----eehhhHHHHHHhcCChhHHHHHHHhh
Q 038758 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA----CVKRPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
+...++.+..+|...|++++|...|+...+. .|+. .+|..+..+|.+.|+.++|.+.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4456888889999999999999999998876 4553 35899999999999999999999886
No 251
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=91.50 E-value=0.46 Score=41.22 Aligned_cols=251 Identities=8% Similarity=-0.003 Sum_probs=144.0
Q ss_pred HHhccCChhhHHHHHHHHHHhccCCC----ceehhhHHHHHHhcCChhHHHHHHHhh----------ccccchhhHHHHH
Q 038758 74 ACSELKDYRVGKDVYDYMISIKFEGN----ACVKRPLLDLFIKCGRMEITSGLFEEM----------DQDFLVNNSLIDF 139 (354)
Q Consensus 74 ~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~----------~~~~~~~~~li~~ 139 (354)
-+++.|+.+....+|+..++.| .-| ..+|..|-++|.-.+|+++|.++-..= .....+...|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 4789999999999999999988 333 345777788888889999998865432 1122333345555
Q ss_pred HHhcCchhHHHHHhccCC----C-----CChhhhHHHHHHHHhCCC--------------------hhHHHHHHHHHHhh
Q 038758 140 YAKCRYLKVSHCKFSKIK----Q-----KDLVSWNAMLAGYALGGF--------------------REEVTNLLDEMEMI 190 (354)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~----~-----~~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m~~~ 190 (354)
+--.|.+++|.-.-.+-. + .....+..+-+.|...|+ ++.|.++|.+=.+.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 556677776654432211 1 112233334555544432 22344444322100
Q ss_pred --hcCCC-CCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcC
Q 038758 191 --QTDMQ-PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267 (354)
Q Consensus 191 --~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 267 (354)
..|-. .-...|..+-+.|.-.|+++.+...++.-+.... +.=++ ..--..+..+-+++.-.|
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~-------------efGDr--AaeRRA~sNlgN~hiflg 249 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQ-------------EFGDR--AAERRAHSNLGNCHIFLG 249 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHH-------------HhhhH--HHHHHhhcccchhhhhhc
Confidence 11211 1234455555566666777777766654332211 11111 112345677788888889
Q ss_pred CHHHHHHHHHHHHHcCcC-----CCHhhHHHHHHHhhccCcccCc----------------cccchhHHHHHHHHHHhcC
Q 038758 268 QVVDALDLLRDVIVANVK-----PNTVTIVSVLPACLKLAALPQG----------------LGTGSFVWNALIDMYGRCG 326 (354)
Q Consensus 268 ~~~~a~~~~~~m~~~g~~-----p~~~t~~~li~~~~~~~~~~~~----------------~~~~~~~~~~li~~~~~~g 326 (354)
+++.|.+.|+.-....++ ....+.-+|-+.|.-..++..+ ..-....+-+|.++|...|
T Consensus 250 ~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg 329 (639)
T KOG1130|consen 250 NFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALG 329 (639)
T ss_pred ccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Confidence 999999988875433221 1222333344444444444444 2234567888999999999
Q ss_pred ChhHHHHHhhcCCC
Q 038758 327 AIQKSRKIFVLMPH 340 (354)
Q Consensus 327 ~~~~A~~~~~~m~~ 340 (354)
..++|..+.+.-.+
T Consensus 330 ~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 330 EHRKALYFAELHLR 343 (639)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999988877654
No 252
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.42 E-value=0.48 Score=25.44 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 038758 33 WTSMMGMYNVLGYYEEIVNLFYLM 56 (354)
Q Consensus 33 y~~li~~~~~~~~~~~a~~~~~~m 56 (354)
|+.|-..|.+.|++++|.+++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 556666666666666666666663
No 253
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.22 E-value=0.37 Score=27.29 Aligned_cols=24 Identities=21% Similarity=0.294 Sum_probs=11.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 038758 35 SMMGMYNVLGYYEEIVNLFYLMID 58 (354)
Q Consensus 35 ~li~~~~~~~~~~~a~~~~~~m~~ 58 (354)
.+-..|.+.|++++|.++|++..+
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444444444444
No 254
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.21 E-value=1.4 Score=36.72 Aligned_cols=77 Identities=8% Similarity=0.066 Sum_probs=58.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHH-----hccCCCceehhhH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS-----IKFEGNACVKRPL 106 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~~~l 106 (354)
++..++..+...|+++.+...++++.+.. +-+...|..+|.+|.+.|+...|++.|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 77778888888888888888888888765 55677788888888888888888888887765 3667766665555
Q ss_pred HHH
Q 038758 107 LDL 109 (354)
Q Consensus 107 i~~ 109 (354)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 255
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.03 E-value=6.8 Score=37.57 Aligned_cols=170 Identities=11% Similarity=0.058 Sum_probs=82.3
Q ss_pred HHHHHHHhcCchhHHHHHhccCCCCChhhhHHHH----HHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhh
Q 038758 135 SLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAML----AGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ 210 (354)
Q Consensus 135 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li----~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~ 210 (354)
.-++.+++...++-|..+-+.-.. |..+...++ +-+.+.|++++|...|-+-. .-+.|. .+++-|..
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI---~~le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI---GFLEPS-----EVIKKFLD 409 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc---ccCChH-----HHHHHhcC
Confidence 345555555566666655544332 222222222 22345667777766665542 122331 23333333
Q ss_pred hcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhh
Q 038758 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290 (354)
Q Consensus 211 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 290 (354)
..+....-..++.+.+.|+ .+...-+.|+.+|.+.++.++-.++.+... .|... .-
T Consensus 410 aq~IknLt~YLe~L~~~gl---------------------a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~--fd 465 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGL---------------------ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWF--FD 465 (933)
T ss_pred HHHHHHHHHHHHHHHHccc---------------------ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Cccee--ee
Confidence 3333333344444444443 234444566777777777766666555544 23221 11
Q ss_pred HHHHHHHhhccCcccCc------cccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 291 IVSVLPACLKLAALPQG------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 291 ~~~li~~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
....+..|.+.+-++++ +......... .+-..|++++|.+.++.++-
T Consensus 466 ~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~i---lle~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 466 VETALEILRKSNYLDEAELLATKFKKHEWVLDI---LLEDLHNYEEALRYISSLPI 518 (933)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHhccCHHHHHH---HHHHhcCHHHHHHHHhcCCH
Confidence 23344444444444444 2222323333 33456778888888888763
No 256
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.72 E-value=5.3 Score=29.48 Aligned_cols=49 Identities=10% Similarity=-0.020 Sum_probs=23.7
Q ss_pred HHhcCchhHHHHHhccCCC--C----ChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 140 YAKCRYLKVSHCKFSKIKQ--K----DLVSWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
..+.|++++|.+.|+.+.. | ....--.++.+|.+.+++++|...++...
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFi 74 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFI 74 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3444555555555555542 1 11223344555555555555555555554
No 257
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.71 E-value=3.6 Score=33.84 Aligned_cols=105 Identities=14% Similarity=0.017 Sum_probs=72.8
Q ss_pred hhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHH
Q 038758 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSC 242 (354)
Q Consensus 163 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 242 (354)
.|+.-+.. .+.|++..|...|....+.-.+-.-....+-.|..++...|+.+.|..+|..+.+.....
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s----------- 211 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS----------- 211 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC-----------
Confidence 47766665 467779999999988851111122223456678888999999999998888877764421
Q ss_pred HHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCH
Q 038758 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288 (354)
Q Consensus 243 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 288 (354)
+.-....--|.....+.|+.++|..+|+++.+. -|+.
T Consensus 212 -------~KApdallKlg~~~~~l~~~d~A~atl~qv~k~--YP~t 248 (262)
T COG1729 212 -------PKAPDALLKLGVSLGRLGNTDEACATLQQVIKR--YPGT 248 (262)
T ss_pred -------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCC
Confidence 112245556677788899999999999999865 4544
No 258
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.58 E-value=1.6 Score=37.93 Aligned_cols=87 Identities=7% Similarity=-0.071 Sum_probs=48.8
Q ss_pred ehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CChhhh-HHHHHHHHhC
Q 038758 102 VKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSW-NAMLAGYALG 174 (354)
Q Consensus 102 ~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~-~~li~~~~~~ 174 (354)
++..|..++.+.+++..|.+.-++. +.+....-.-..++...|+++.|+..|+++.+ |+...- +.++...-+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 4555666666666666666555544 34444444455666666777777777776664 544333 3333333333
Q ss_pred CCh-hHHHHHHHHHH
Q 038758 175 GFR-EEVTNLLDEME 188 (354)
Q Consensus 175 ~~~-~~a~~~~~~m~ 188 (354)
.+. +...++|..|.
T Consensus 339 ~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 339 REYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHh
Confidence 333 34467777775
No 259
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.57 E-value=4.1 Score=37.22 Aligned_cols=93 Identities=10% Similarity=-0.009 Sum_probs=68.9
Q ss_pred hHHHHHHHHHh----cCChhHHHHHHHHHHhCCCcCCcccHHHHH-HHHhccCChhhHHHHHHHHHHhc--c-CCCceeh
Q 038758 32 NWTSMMGMYNV----LGYYEEIVNLFYLMIDKGVRPDHFVCPKVY-KACSELKDYRVGKDVYDYMISIK--F-EGNACVK 103 (354)
Q Consensus 32 ~y~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~m~~~~--~-~~~~~~~ 103 (354)
.|+.++..++. ..+.+.+.++++.+.++ -|+...|...- +.+...|+++.|.+.|+...... . ......+
T Consensus 231 ~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~ 308 (468)
T PF10300_consen 231 WYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCY 308 (468)
T ss_pred HHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHH
Confidence 77888777665 46788899999999986 57776665543 44567899999999999765321 1 1223345
Q ss_pred hhHHHHHHhcCChhHHHHHHHhh
Q 038758 104 RPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 104 ~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
--+...+.-.+++++|.+.|.++
T Consensus 309 ~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 309 FELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHHHHchHHHHHHHHHHH
Confidence 56777788999999999999988
No 260
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=90.24 E-value=3.7 Score=30.40 Aligned_cols=87 Identities=7% Similarity=0.033 Sum_probs=69.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCC-----cCCcccHHHHHHHHhccCC-hhhHHHHHHHHHHhccCCCceehhh
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGV-----RPDHFVCPKVYKACSELKD-YRVGKDVYDYMISIKFEGNACVKRP 105 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ 105 (354)
..|+++.-....+++...+.+++.+..... ..+...|++++.+..+... --.+..+|..|++.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 568888888889999999999998854321 3567789999999977766 5567899999999888999999999
Q ss_pred HHHHHHhcCChhH
Q 038758 106 LLDLFIKCGRMEI 118 (354)
Q Consensus 106 li~~~~~~g~~~~ 118 (354)
+|.++.+-...+.
T Consensus 121 li~~~l~g~~~~~ 133 (145)
T PF13762_consen 121 LIKAALRGYFHDS 133 (145)
T ss_pred HHHHHHcCCCCcc
Confidence 9998887754443
No 261
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.08 E-value=1.3 Score=24.97 Aligned_cols=34 Identities=29% Similarity=0.506 Sum_probs=28.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhh
Q 038758 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290 (354)
Q Consensus 255 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 290 (354)
+|..+-..|...|++++|+++|++..+. .|+...
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~~ 36 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL--DPDDPE 36 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHH
Confidence 5677889999999999999999999975 566543
No 262
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.02 E-value=1.6 Score=29.52 Aligned_cols=59 Identities=12% Similarity=0.210 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHH
Q 038758 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL 107 (354)
Q Consensus 48 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 107 (354)
++.+-++.+...++.|+.....+.+++|.+.+|+..|.++|+-.+... ..+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 555666666666788888888899999988899999999888776331 22344555554
No 263
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.96 E-value=2.7 Score=30.99 Aligned_cols=77 Identities=13% Similarity=0.005 Sum_probs=44.2
Q ss_pred HHhcCChhHHHHHHHHHHhCCC--cCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCCh
Q 038758 40 YNVLGYYEEIVNLFYLMIDKGV--RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM 116 (354)
Q Consensus 40 ~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 116 (354)
..+.|++++|.+.|+.+..+-. +-....--.|+.++.+.++++.|...++...+....---.-|-..+.+++.....
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence 3456777777777777766521 1122334556667777777777777777777664221223455555555544443
No 264
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.77 E-value=6.7 Score=29.94 Aligned_cols=134 Identities=10% Similarity=0.073 Sum_probs=88.5
Q ss_pred HHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh-ccccchhhHHHHHHHhc--CchhHHHHHhccCCCCCh
Q 038758 85 KDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKC--RYLKVSHCKFSKIKQKDL 161 (354)
Q Consensus 85 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~ 161 (354)
.+++.-+.+.+++|+...+..+++.+.+.|++.....++..= -+|.......+-.+... .-..-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~---- 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG---- 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----
Confidence 356666677899999999999999999999998888776643 33333333333222211 11334445555543
Q ss_pred hhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhc
Q 038758 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH 228 (354)
Q Consensus 162 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 228 (354)
..+..++..+...|++-+|+++.+... . .+......++.+..+.+|...-..+++.+.+.+
T Consensus 90 ~~~~~iievLL~~g~vl~ALr~ar~~~--~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 90 TAYEEIIEVLLSKGQVLEALRYARQYH--K----VDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHcC--C----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 246667788889999999999998764 2 222334667888888877776666666666544
No 265
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=89.76 E-value=12 Score=33.81 Aligned_cols=167 Identities=13% Similarity=0.061 Sum_probs=91.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCC
Q 038758 36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR 115 (354)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 115 (354)
+|.---+..+.+.-.+.-++..+ +.||-.+.-.++ +--....+.++.+++++..+.| +.... ..... ...|.
T Consensus 174 IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAg-E~~lg-~s~~~---~~~g~ 245 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAG-EASLG-KSQFL---QHHGH 245 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHH-HHhhc-hhhhh---hcccc
Confidence 33334455566666666666555 345544433333 2224556788899998888765 11000 00000 11111
Q ss_pred hhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCC--CC---hhhhHHHHHHHHhCCChhHHHHHHHHHHhh
Q 038758 116 MEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KD---LVSWNAMLAGYALGGFREEVTNLLDEMEMI 190 (354)
Q Consensus 116 ~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 190 (354)
.-+.. .-+...+-..+-..|..+.-+.|+.++|.+.|++|.+ |. ......|+.++...+.+.++..++.+-.
T Consensus 246 ~~e~~-~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd-- 322 (539)
T PF04184_consen 246 FWEAW-HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD-- 322 (539)
T ss_pred hhhhh-hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc--
Confidence 11110 0000011122224566777788999999999988863 32 2356679999999999999999999874
Q ss_pred hcCCCC-CcchHHHHHHHhhhhcC
Q 038758 191 QTDMQP-NTISLSGVLAACAQVKG 213 (354)
Q Consensus 191 ~~~~~p-~~~t~~~ll~~~~~~~~ 213 (354)
+...+. -...|+..+--+...++
T Consensus 323 Di~lpkSAti~YTaALLkaRav~d 346 (539)
T PF04184_consen 323 DISLPKSATICYTAALLKARAVGD 346 (539)
T ss_pred cccCCchHHHHHHHHHHHHHhhcc
Confidence 322222 24557766554444443
No 266
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.68 E-value=2.2 Score=37.11 Aligned_cols=115 Identities=11% Similarity=0.130 Sum_probs=79.6
Q ss_pred HHHHhcCChhHHHHHHHhh-------------------ccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhH
Q 038758 108 DLFIKCGRMEITSGLFEEM-------------------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWN 165 (354)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~~-------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~ 165 (354)
+.|.+.|++..|..-|++. .....++..|..+|.+.+++.+|++.-+.... +|+-..-
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 4566777777777766664 23455677888899999999999988776654 5566655
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhh-cC-ccccchhhhHhhh
Q 038758 166 AMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV-KG-VKLGKAIHGYVLR 226 (354)
Q Consensus 166 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~-~~-~~~a~~~~~~~~~ 226 (354)
.--.++...|+++.|...|+.+. .+.|+......=|..|.+. .. .+...++|..|..
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~----k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKAL----KLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHH----HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66778899999999999999997 4678877776666655432 21 2333455554443
No 267
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.60 E-value=11 Score=31.51 Aligned_cols=137 Identities=11% Similarity=0.079 Sum_probs=86.7
Q ss_pred HHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccch-----hhHHHHHHHhcCchhH
Q 038758 74 ACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLV-----NNSLIDFYAKCRYLKV 148 (354)
Q Consensus 74 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~li~~~~~~~~~~~ 148 (354)
.....|++..|...|....... +-+...--.+..+|...|+.+.|..++..++.+... ...-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4567889999999998888764 445666778889999999999999999998443221 1223444555544444
Q ss_pred HHHHhccCC-CC-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhc
Q 038758 149 SHCKFSKIK-QK-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212 (354)
Q Consensus 149 a~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~ 212 (354)
...+-++.- .| |...--.+...+...|+.+.|++.+-.+.+...|.. |...-..++..+.-.|
T Consensus 222 ~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 444433332 24 455555677788888999998887766652123332 3444455555555444
No 268
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.36 E-value=7.9 Score=32.38 Aligned_cols=140 Identities=9% Similarity=-0.007 Sum_probs=93.3
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhH
Q 038758 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEI 118 (354)
Q Consensus 39 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 118 (354)
.....|++.+|..+|+...+.. +-+...--.+...+...|+++.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4567899999999999998864 234556777888899999999999999987643212222223344555555555554
Q ss_pred HHHHHHhh---ccccchhhHHHHHHHhcCchhHHHHHhccCCC-----CChhhhHHHHHHHHhCCChhH
Q 038758 119 TSGLFEEM---DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-----KDLVSWNAMLAGYALGGFREE 179 (354)
Q Consensus 119 a~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~ 179 (354)
...+-.+. +.|...--.+...+...|+.++|.+.+-.+.. .|...-..++..|.--|.-+.
T Consensus 222 ~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 222 IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 44444444 44555556678889999999999887755543 345556666666666664333
No 269
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.16 E-value=5.6 Score=32.27 Aligned_cols=187 Identities=9% Similarity=0.041 Sum_probs=90.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHH------HHHHHHhccCChhhHHHHHHHHH----HhccCCCce
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCP------KVYKACSELKDYRVGKDVYDYMI----SIKFEGNAC 101 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~------~ll~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~ 101 (354)
.|----.+|....++++|-..+.+..+- .+.|...|+ ...-..-....+.++.++++... +.| .|++.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-spdtA 110 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-SPDTA 110 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CcchH
Confidence 4445555666777777777766665531 222333222 22222223334444444444432 223 23221
Q ss_pred ehh-hHHHHHHhcCChhHHHHHHHhh----------ccccchhhHHHHHHHhcCchhHHHHHhccCCC--------CCh-
Q 038758 102 VKR-PLLDLFIKCGRMEITSGLFEEM----------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--------KDL- 161 (354)
Q Consensus 102 ~~~-~li~~~~~~g~~~~a~~~~~~~----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~~~- 161 (354)
.-. --..-..+.-+++.|+++|.+- ..-...+...-..+.+...+++|-..|.+-.. ++.
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~ 190 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQC 190 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHH
Confidence 110 0001122334555555555554 11223344455566666666666665544432 111
Q ss_pred hhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCC--CCCcchHHHHHHHhhhhcCccccchhhh
Q 038758 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDM--QPNTISLSGVLAACAQVKGVKLGKAIHG 222 (354)
Q Consensus 162 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 222 (354)
..|-..|-.+.-..++..|.+.+++-.. ..++ .-+..+...+|.+|- .||.+.+..+..
T Consensus 191 k~~va~ilv~L~~~Dyv~aekc~r~~~q-ip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 191 KAYVAAILVYLYAHDYVQAEKCYRDCSQ-IPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcchhc-CccccChHHHHHHHHHHHHhc-cCCHHHHHHHHc
Confidence 1244445555566788888888877431 1222 224567777777764 456666655544
No 270
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.11 E-value=16 Score=32.64 Aligned_cols=53 Identities=6% Similarity=-0.007 Sum_probs=28.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc------cccchhHHHHH
Q 038758 264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTGSFVWNAL 318 (354)
Q Consensus 264 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~------~~~~~~~~~~l 318 (354)
...|++.++.-.-..+. .+.|+..+|..+--++....+.++| ++|+..++++=
T Consensus 473 ysqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~dsk 531 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDSK 531 (549)
T ss_pred HhcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHHH
Confidence 34566666554444443 3456666666555555555555555 55565555543
No 271
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.77 E-value=6.4 Score=33.56 Aligned_cols=142 Identities=11% Similarity=-0.021 Sum_probs=79.5
Q ss_pred cCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCce----ehhhHHHHHHhcCChhH
Q 038758 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC----VKRPLLDLFIKCGRMEI 118 (354)
Q Consensus 43 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~ 118 (354)
+|++.+|-..++++.+. .+.|...++..-.+|.-.|+...-...++.+...- .|+.. +-..+.-++..+|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccchh
Confidence 35555555556665553 34455556666666666676666666666655331 22332 22334445566777777
Q ss_pred HHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCCC--C-----hhhhHHHHHHHHhCCChhHHHHHHHH
Q 038758 119 TSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK--D-----LVSWNAMLAGYALGGFREEVTNLLDE 186 (354)
Q Consensus 119 a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~-----~~~~~~li~~~~~~~~~~~a~~~~~~ 186 (354)
|++.-++- +.|.-.-.++...+--.|+++++.++.++-... + ...|=...-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 77766665 333334455666666677777777776655421 0 11122223334566788888888864
No 272
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=88.68 E-value=4.8 Score=29.17 Aligned_cols=86 Identities=12% Similarity=-0.020 Sum_probs=50.4
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCce---ehhhHHHHHHhcCC
Q 038758 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC---VKRPLLDLFIKCGR 115 (354)
Q Consensus 39 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~ 115 (354)
+....|+++.|++.|.+.... .+-....||.-..++.-.|+.++|.+-+++..+..-..+.. .|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 355667777777777776654 23455667777777777777777777777766553122221 12222234455566
Q ss_pred hhHHHHHHHh
Q 038758 116 MEITSGLFEE 125 (354)
Q Consensus 116 ~~~a~~~~~~ 125 (354)
.+.|..=|+.
T Consensus 131 dd~AR~DFe~ 140 (175)
T KOG4555|consen 131 DDAARADFEA 140 (175)
T ss_pred hHHHHHhHHH
Confidence 6666555444
No 273
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.62 E-value=1.8 Score=29.63 Aligned_cols=59 Identities=10% Similarity=0.195 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHH
Q 038758 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL 107 (354)
Q Consensus 48 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 107 (354)
+...-++.+...++.|+.....+.+++|.+.+++..|.++|+-.+..- .+....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHH
Confidence 455666666667788888888888888888889998888888877542 23333666554
No 274
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.47 E-value=10 Score=34.24 Aligned_cols=107 Identities=12% Similarity=0.142 Sum_probs=60.6
Q ss_pred hcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCC----cchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCC
Q 038758 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRD----VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286 (354)
Q Consensus 211 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 286 (354)
...+.++++++++..+.+-..-.+....+..-...+....++ ..+-..+-.+.-+.|+.++|++.+++|.+.. |
T Consensus 213 A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~--p 290 (539)
T PF04184_consen 213 ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF--P 290 (539)
T ss_pred ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC--C
Confidence 344677777777776665432211111111001111111222 2233344555667899999999999998643 3
Q ss_pred CHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 287 NTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 287 ~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
.... ..+...|++++...+.+.++..++.+..+
T Consensus 291 ~~~~---------------------l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 291 NLDN---------------------LNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred ccch---------------------hhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 2211 12366788888888888888888877654
No 275
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.23 E-value=0.38 Score=25.53 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=15.1
Q ss_pred CCCceehhhHHHHHHhcCChhHHH
Q 038758 97 EGNACVKRPLLDLFIKCGRMEITS 120 (354)
Q Consensus 97 ~~~~~~~~~li~~~~~~g~~~~a~ 120 (354)
+-+...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445566666666666666666654
No 276
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.99 E-value=7.7 Score=28.83 Aligned_cols=17 Identities=18% Similarity=0.440 Sum_probs=8.4
Q ss_pred HHhcCChhHHHHHHHhh
Q 038758 110 FIKCGRMEITSGLFEEM 126 (354)
Q Consensus 110 ~~~~g~~~~a~~~~~~~ 126 (354)
+...|++++|.++|+++
T Consensus 54 ~i~rg~w~eA~rvlr~l 70 (153)
T TIGR02561 54 LIARGNYDEAARILREL 70 (153)
T ss_pred HHHcCCHHHHHHHHHhh
Confidence 34445555555555544
No 277
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.80 E-value=14 Score=30.20 Aligned_cols=26 Identities=19% Similarity=0.091 Sum_probs=17.4
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHH
Q 038758 68 CPKVYKACSELKDYRVGKDVYDYMIS 93 (354)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (354)
|...-.+|....++++|...+....+
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~ 59 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASK 59 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 44445566777788888887766553
No 278
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.18 E-value=17 Score=30.60 Aligned_cols=138 Identities=12% Similarity=0.081 Sum_probs=72.1
Q ss_pred HhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHH-------hccC-ChhhHHHHHHHHHHh----c----cCCC-----
Q 038758 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKAC-------SELK-DYRVGKDVYDYMISI----K----FEGN----- 99 (354)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-------~~~~-~~~~a~~~~~~m~~~----~----~~~~----- 99 (354)
.+.|+++.|...+.+.+......++.....|-..| ...+ +++.|..++++..+. + ..|+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46789999999998887643222333222332222 2344 777777666665543 1 1111
Q ss_pred ceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCC--CC-hhhhHHHHHHHHhCCC
Q 038758 100 ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KD-LVSWNAMLAGYALGGF 176 (354)
Q Consensus 100 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~ 176 (354)
..+...++.+|...+..+...+ |.++++.+.. |+ +.++-.-+..+.+.++
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~k---------------------------a~~~l~~l~~e~~~~~~~~~L~l~il~~~~~ 136 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEK---------------------------ALNALRLLESEYGNKPEVFLLKLEILLKSFD 136 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHH---------------------------HHHHHHHHHHhCCCCcHHHHHHHHHHhccCC
Confidence 1234444555555554443332 3333333321 33 3444455666666788
Q ss_pred hhHHHHHHHHHHhhhcCCCCCcchHHHHHHHh
Q 038758 177 REEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208 (354)
Q Consensus 177 ~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~ 208 (354)
.+.+.+.+..|. . .+......+..++..+
T Consensus 137 ~~~~~~~L~~mi--~-~~~~~e~~~~~~l~~i 165 (278)
T PF08631_consen 137 EEEYEEILMRMI--R-SVDHSESNFDSILHHI 165 (278)
T ss_pred hhHHHHHHHHHH--H-hcccccchHHHHHHHH
Confidence 888888888886 2 2332334455555544
No 279
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=86.69 E-value=23 Score=31.65 Aligned_cols=123 Identities=11% Similarity=0.013 Sum_probs=65.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
--|-++.-|...|+..+|.+..+++... -+.....-+++...+.-..+.-+.-.+.+.+...+...-+.+..++.
T Consensus 216 kIn~~l~eyv~~getrea~rciR~L~vs-----ffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfs 290 (645)
T KOG0403|consen 216 KINGNLIEYVEIGETREACRCIRELGVS-----FFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFS 290 (645)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhCCC-----chhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCch
Confidence 5677778888999888888887776432 22222222333322222222222111222222223333334444444
Q ss_pred hcC--------ChhHHHHHHHhhcc---------------------c---c----chhhHHHHHHHhcCchhHHHHHhcc
Q 038758 112 KCG--------RMEITSGLFEEMDQ---------------------D---F----LVNNSLIDFYAKCRYLKVSHCKFSK 155 (354)
Q Consensus 112 ~~g--------~~~~a~~~~~~~~~---------------------~---~----~~~~~li~~~~~~~~~~~a~~~~~~ 155 (354)
+.+ ++..|...|+.+.| + . .....+|+-|...|+..+..+.++.
T Consensus 291 r~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~~r~Fkk~~~~IIqEYFlsgDt~Evi~~L~D 370 (645)
T KOG0403|consen 291 RKGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSENLRAFKKDLTPIIQEYFLSGDTPEVIRSLRD 370 (645)
T ss_pred hhccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchHHHHHHHhhHHHHHHHHhcCChHHHHHHHHH
Confidence 432 44556666666500 0 1 1335688888999999988888887
Q ss_pred CCCC
Q 038758 156 IKQK 159 (354)
Q Consensus 156 ~~~~ 159 (354)
+.-|
T Consensus 371 Ln~~ 374 (645)
T KOG0403|consen 371 LNLP 374 (645)
T ss_pred cCCc
Confidence 7643
No 280
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.45 E-value=1.9 Score=23.62 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=24.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038758 254 VVWNSIISAFVRSGQVVDALDLLRDVIV 281 (354)
Q Consensus 254 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (354)
.+++.|-..|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4688899999999999999999999865
No 281
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.37 E-value=1.4 Score=21.55 Aligned_cols=24 Identities=13% Similarity=0.048 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHhhc
Q 038758 314 VWNALIDMYGRCGAIQKSRKIFVL 337 (354)
Q Consensus 314 ~~~~li~~~~~~g~~~~A~~~~~~ 337 (354)
....+...+...|++++|.+++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 345688899999999999998864
No 282
>PRK11906 transcriptional regulator; Provisional
Probab=86.30 E-value=15 Score=32.95 Aligned_cols=81 Identities=7% Similarity=-0.077 Sum_probs=54.9
Q ss_pred cCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHH
Q 038758 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGL 122 (354)
Q Consensus 43 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 122 (354)
.....+|.++.++..+.+ +-|......+..+..-.++++.+...|++....+ +-...+|........-+|+.++|.+.
T Consensus 317 ~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 317 ELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred hHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345566777777777765 4455555555555666777888888888877654 33345566666666777888888887
Q ss_pred HHh
Q 038758 123 FEE 125 (354)
Q Consensus 123 ~~~ 125 (354)
+++
T Consensus 395 i~~ 397 (458)
T PRK11906 395 IDK 397 (458)
T ss_pred HHH
Confidence 777
No 283
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.05 E-value=13 Score=28.14 Aligned_cols=20 Identities=0% Similarity=-0.134 Sum_probs=10.5
Q ss_pred HHHhcCchhHHHHHhccCCC
Q 038758 139 FYAKCRYLKVSHCKFSKIKQ 158 (354)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~ 158 (354)
.+.+.|++.+|.++|+++..
T Consensus 53 l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 53 LHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHHhCCHHHHHHHHHHHhc
Confidence 34455555555555555543
No 284
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.04 E-value=32 Score=32.77 Aligned_cols=46 Identities=13% Similarity=0.053 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccC
Q 038758 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK 79 (354)
Q Consensus 33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 79 (354)
--.+|-.+.|.|++++|.++..+.... .......|...+..+....
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCC
Confidence 346778899999999999999666543 4666677888888887653
No 285
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.34 E-value=2 Score=23.53 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=19.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMID 58 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~ 58 (354)
+++.|-..|...|++++|..++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 567777777778888888887777654
No 286
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=84.73 E-value=11 Score=26.36 Aligned_cols=63 Identities=13% Similarity=0.159 Sum_probs=38.8
Q ss_pred hHhhhhh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHH
Q 038758 25 QLLEVFC-NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS 93 (354)
Q Consensus 25 ~li~~~~-~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (354)
+|+.+|. +-..++..+.+..+.=...++-+.+.+.+ -|..|+..|...|..++|.+++..+.+
T Consensus 4 aLlk~Yl~~~~~~l~~llr~~N~C~~~~~e~~L~~~~------~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 4 ALLKCYLETNPSLLGPLLRLPNYCDLEEVEEVLKEHG------KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHhCHHHHHHHHccCCcCCHHHHHHHHHHcC------CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4555554 33345555555544434444444444433 388888888888888888888888776
No 287
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.63 E-value=15 Score=27.75 Aligned_cols=48 Identities=10% Similarity=0.093 Sum_probs=23.5
Q ss_pred HhcCchhHHHHHhccCC--CCChhhhHHH-HHHHHhCCChhHHHHHHHHHH
Q 038758 141 AKCRYLKVSHCKFSKIK--QKDLVSWNAM-LAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 141 ~~~~~~~~a~~~~~~~~--~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~ 188 (354)
.+.++.++++.+++.++ .|.......+ .-.+.+.|+|.+|.++|+++.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34456666666665554 2332222111 122345566666666666654
No 288
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.52 E-value=0.82 Score=23.92 Aligned_cols=28 Identities=11% Similarity=0.108 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 313 FVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 313 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
.+|..+...|...|++++|...|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4688899999999999999999988765
No 289
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=83.91 E-value=6.2 Score=28.62 Aligned_cols=49 Identities=10% Similarity=0.036 Sum_probs=25.6
Q ss_pred HhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHH
Q 038758 75 CSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFE 124 (354)
Q Consensus 75 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 124 (354)
+...|+.+.|.+.|.+....- +.+...||.-..++.-.|+.++|.+=++
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn 101 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLN 101 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHH
Confidence 345555555555555554432 3345555555555555555555554333
No 290
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.90 E-value=0.63 Score=24.00 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=22.8
Q ss_pred HHHHHHHHHhcCChhHHHHHhhcCCC--CC
Q 038758 315 WNALIDMYGRCGAIQKSRKIFVLMPH--KN 342 (354)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m~~--~~ 342 (354)
+-.+...+.+.|++++|.+.|+++.+ |+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34567788899999999999998876 54
No 291
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.82 E-value=4.3 Score=31.45 Aligned_cols=60 Identities=8% Similarity=0.017 Sum_probs=43.6
Q ss_pred cHHHHHHHHhccCChhhHHHHHHHHHHhccCCC--ceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758 67 VCPKVYKACSELKDYRVGKDVYDYMISIKFEGN--ACVKRPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
.+..+...|.+.|+.+.|.+.|..+.+....+. ...+-.+|+.....+++..+.....+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 467777888888888888888888877644433 345667777888888888877765553
No 292
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.68 E-value=0.92 Score=23.58 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 313 FVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 313 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
..|..+...+.+.|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3577888999999999999999987654
No 293
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=83.66 E-value=3.7 Score=21.30 Aligned_cols=29 Identities=14% Similarity=0.292 Sum_probs=24.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038758 254 VVWNSIISAFVRSGQVVDALDLLRDVIVA 282 (354)
Q Consensus 254 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (354)
.+|..+...|...|++++|+..|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 35778889999999999999999999854
No 294
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.62 E-value=5.9 Score=31.15 Aligned_cols=65 Identities=14% Similarity=0.045 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh--------ccccchhhHHHHHHHhcCchhHH
Q 038758 84 GKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM--------DQDFLVNNSLIDFYAKCRYLKVS 149 (354)
Q Consensus 84 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--------~~~~~~~~~li~~~~~~~~~~~a 149 (354)
|.+.|-.+...+..-++.....|...|. ..|.+++..++.+. .+++..+..|.+.|-+.|+++.|
T Consensus 125 A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 125 ALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3344444444333333333333333333 33444444444443 23444455555555555555544
No 295
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.47 E-value=3.7 Score=27.87 Aligned_cols=47 Identities=21% Similarity=0.314 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhh
Q 038758 179 EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH 227 (354)
Q Consensus 179 ~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 227 (354)
++.+-++.+. ...+.|+.....+.++||.+.+|+..|.++++-++..
T Consensus 25 e~rr~mN~l~--~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 25 ELRRGLNNLF--GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred HHHHHHHHHh--ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 5566666666 6778888888888888888888888888887766643
No 296
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.32 E-value=12 Score=25.65 Aligned_cols=60 Identities=13% Similarity=0.146 Sum_probs=44.3
Q ss_pred HHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchH
Q 038758 137 IDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISL 201 (354)
Q Consensus 137 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~ 201 (354)
++.+...|++++|..+.+....||...|-++-.. +.|..+++..-+..|. ..| .|....|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla--~sg-~p~lq~F 105 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLA--ASG-DPRLQTF 105 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHH--hCC-CHHHHHH
Confidence 4577888999999999999988999999777654 6677777777777775 333 3444444
No 297
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.01 E-value=18 Score=27.87 Aligned_cols=124 Identities=11% Similarity=0.020 Sum_probs=61.5
Q ss_pred HhcCchhHHHHHhccCCCCChhhhHHHH-----HHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHH-H--hhhhc
Q 038758 141 AKCRYLKVSHCKFSKIKQKDLVSWNAML-----AGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA-A--CAQVK 212 (354)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~li-----~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~-~--~~~~~ 212 (354)
.+.+..++|+.-|..+.+.+--.|-.|. ......|+...|...|+++- ...-.|-..-=..-++ + +...|
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia--~dt~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIA--ADTSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHh--ccCCCcchhhHHHHHHHHHHHhccc
Confidence 3445555666666555543333333222 22456677777778887776 4444443331111122 1 22333
Q ss_pred CccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCC
Q 038758 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286 (354)
Q Consensus 213 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 286 (354)
.++.+....+.+...+- +--...-..|--+--+.|++.+|.+.|..+......|
T Consensus 147 sy~dV~srvepLa~d~n--------------------~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 147 SYDDVSSRVEPLAGDGN--------------------PMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred cHHHHHHHhhhccCCCC--------------------hhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 33333332222111110 1112334456566678899999999999987643344
No 298
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.74 E-value=7.4 Score=31.03 Aligned_cols=56 Identities=5% Similarity=-0.072 Sum_probs=28.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHH
Q 038758 36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMI 92 (354)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 92 (354)
.++.+.+.+.+.+++...++-.+.. +-|..+-..+++.++-.|++++|..-++..-
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 3445555555555555555544432 2233344455555555555555555444443
No 299
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.98 E-value=3.9 Score=28.04 Aligned_cols=47 Identities=21% Similarity=0.296 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhh
Q 038758 179 EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH 227 (354)
Q Consensus 179 ~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 227 (354)
+..+-++.+. ...+.|+.....+.|++|.+.+++..|.++++-++..
T Consensus 28 e~rrglN~l~--~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLF--GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHT--TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4455555555 6667777777777777777777777777776665544
No 300
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.85 E-value=9.7 Score=30.77 Aligned_cols=17 Identities=6% Similarity=0.063 Sum_probs=12.6
Q ss_pred HhCCChhHHHHHHHHHH
Q 038758 172 ALGGFREEVTNLLDEME 188 (354)
Q Consensus 172 ~~~~~~~~a~~~~~~m~ 188 (354)
...+++.+|.++|++.-
T Consensus 165 a~leqY~~Ai~iyeqva 181 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVA 181 (288)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45577788888888776
No 301
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=81.72 E-value=9 Score=28.42 Aligned_cols=51 Identities=12% Similarity=0.148 Sum_probs=42.3
Q ss_pred CChhhhHHHHHHHHhCCC-hhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhh
Q 038758 159 KDLVSWNAMLAGYALGGF-REEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211 (354)
Q Consensus 159 ~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~ 211 (354)
.+..+|++++.+..+..- ---+..+|+-|+ +.+.+++..-|..+++++.+.
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk--~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK--KNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHH--HcCCCCCHHHHHHHHHHHHcC
Confidence 466789999999976665 446788999998 788999999999999988765
No 302
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.65 E-value=26 Score=28.42 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=17.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCcCC
Q 038758 264 VRSGQVVDALDLLRDVIVANVKP 286 (354)
Q Consensus 264 ~~~g~~~~a~~~~~~m~~~g~~p 286 (354)
+..+++++|+++|++.....+.-
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 45688999999999987765443
No 303
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.01 E-value=14 Score=31.30 Aligned_cols=109 Identities=8% Similarity=0.020 Sum_probs=66.3
Q ss_pred hccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhh-hcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccc
Q 038758 153 FSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI-QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHL 231 (354)
Q Consensus 153 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 231 (354)
|..-....+.+...++..-....+++++...+-.++.. +.-..|+...+ .+++-|. .-+++++..+...=.+.|+
T Consensus 56 F~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGi-- 131 (418)
T KOG4570|consen 56 FERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGI-- 131 (418)
T ss_pred hhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhcc--
Confidence 33333344555555555555567778887777766510 11123333332 2223222 2345566666666666777
Q ss_pred ccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038758 232 STACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283 (354)
Q Consensus 232 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 283 (354)
-||.++++.+|+.+.+.+++.+|.++.-.|....
T Consensus 132 ------------------F~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 132 ------------------FPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred ------------------ccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 7888888888888888888888888877776554
No 304
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=80.55 E-value=10 Score=26.54 Aligned_cols=65 Identities=17% Similarity=0.290 Sum_probs=43.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhh
Q 038758 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFV 336 (354)
Q Consensus 257 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 336 (354)
++|+.+|... +......+++ .||.-....+-..+.+.+. |..|+..|...|.+++|.+++.
T Consensus 3 TaLlk~Yl~~-~~~~l~~llr-------~~N~C~~~~~e~~L~~~~~-----------~~eL~~lY~~kg~h~~AL~ll~ 63 (108)
T PF10366_consen 3 TALLKCYLET-NPSLLGPLLR-------LPNYCDLEEVEEVLKEHGK-----------YQELVDLYQGKGLHRKALELLK 63 (108)
T ss_pred HHHHHHHHHh-CHHHHHHHHc-------cCCcCCHHHHHHHHHHcCC-----------HHHHHHHHHccCccHHHHHHHH
Confidence 4567777766 5554444443 2344344444444444444 8899999999999999999998
Q ss_pred cCCC
Q 038758 337 LMPH 340 (354)
Q Consensus 337 ~m~~ 340 (354)
+..+
T Consensus 64 ~l~~ 67 (108)
T PF10366_consen 64 KLAD 67 (108)
T ss_pred HHhc
Confidence 7765
No 305
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=80.40 E-value=5.6 Score=20.40 Aligned_cols=28 Identities=14% Similarity=0.393 Sum_probs=22.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038758 255 VWNSIISAFVRSGQVVDALDLLRDVIVA 282 (354)
Q Consensus 255 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (354)
.|..+-..+.+.|++++|++.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4666778899999999999999998754
No 306
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.24 E-value=20 Score=33.32 Aligned_cols=92 Identities=10% Similarity=0.010 Sum_probs=44.8
Q ss_pred cCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhc
Q 038758 113 CGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQT 192 (354)
Q Consensus 113 ~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 192 (354)
.|+++.|..++..++ ...-+.+...+.+.|-.++|+++-. |... -.....+.|+++.|.++..+..
T Consensus 599 rrd~~~a~~vLp~I~--k~~rt~va~Fle~~g~~e~AL~~s~-----D~d~---rFelal~lgrl~iA~~la~e~~---- 664 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP--KEIRTKVAHFLESQGMKEQALELST-----DPDQ---RFELALKLGRLDIAFDLAVEAN---- 664 (794)
T ss_pred hccccccccccccCc--hhhhhhHHhHhhhccchHhhhhcCC-----Chhh---hhhhhhhcCcHHHHHHHHHhhc----
Confidence 455555555444443 2333445555555555555554321 1111 1122234566666666555553
Q ss_pred CCCCCcchHHHHHHHhhhhcCccccchhhh
Q 038758 193 DMQPNTISLSGVLAACAQVKGVKLGKAIHG 222 (354)
Q Consensus 193 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 222 (354)
+..-|..+-.+..+.+++..|.+.+.
T Consensus 665 ----s~~Kw~~Lg~~al~~~~l~lA~EC~~ 690 (794)
T KOG0276|consen 665 ----SEVKWRQLGDAALSAGELPLASECFL 690 (794)
T ss_pred ----chHHHHHHHHHHhhcccchhHHHHHH
Confidence 33345556666666666655555543
No 307
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=80.12 E-value=26 Score=27.35 Aligned_cols=156 Identities=12% Similarity=-0.013 Sum_probs=87.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC-CCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHH-H
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLD-L 109 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~-~ 109 (354)
.+......+...+.+..+...+...... ........+..........+++..+.+.+.........+ ......... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 3445555566667777777776666542 223333445555555556666777777776666543222 122222222 5
Q ss_pred HHhcCChhHHHHHHHhhcc-------ccchhhHHHHHHHhcCchhHHHHHhccCCC---C-ChhhhHHHHHHHHhCCChh
Q 038758 110 FIKCGRMEITSGLFEEMDQ-------DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---K-DLVSWNAMLAGYALGGFRE 178 (354)
Q Consensus 110 ~~~~g~~~~a~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~-~~~~~~~li~~~~~~~~~~ 178 (354)
+...|+++.+...+++... ....+......+...++.+.+...+..... . ....+..+-..+...++++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence 6777777777777776511 111122222334556677777777766553 2 2344666666667777777
Q ss_pred HHHHHHHHHH
Q 038758 179 EVTNLLDEME 188 (354)
Q Consensus 179 ~a~~~~~~m~ 188 (354)
.+...+....
T Consensus 220 ~a~~~~~~~~ 229 (291)
T COG0457 220 EALEYYEKAL 229 (291)
T ss_pred HHHHHHHHHH
Confidence 7777777665
No 308
>PRK11906 transcriptional regulator; Provisional
Probab=79.31 E-value=48 Score=29.92 Aligned_cols=112 Identities=9% Similarity=-0.027 Sum_probs=66.2
Q ss_pred ChhHHHHHHHHHHhC-CCcCCccc-HHHHHHHHh---------ccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhc
Q 038758 45 YYEEIVNLFYLMIDK-GVRPDHFV-CPKVYKACS---------ELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKC 113 (354)
Q Consensus 45 ~~~~a~~~~~~m~~~-~~~p~~~~-~~~ll~~~~---------~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 113 (354)
..+.|+.+|.+.... .+.|+-.. |..+-..+. ...+..+|.+.-+...+.+ +-|+.....+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 456788889888732 24454332 333322221 1223445666666666665 66777777777777888
Q ss_pred CChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCC
Q 038758 114 GRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157 (354)
Q Consensus 114 g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 157 (354)
|+.+.+...|++. +....+|........-.|+.++|.+.+++..
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 8888888888876 2233344444444455566666666666643
No 309
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.61 E-value=17 Score=30.85 Aligned_cols=94 Identities=5% Similarity=-0.042 Sum_probs=53.9
Q ss_pred ccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhh------HHHHHHHhcCchhHHHHHhccCCC----CChhhh
Q 038758 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNN------SLIDFYAKCRYLKVSHCKFSKIKQ----KDLVSW 164 (354)
Q Consensus 95 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~ 164 (354)
|.+....+...++..-....+++.++..+-+++.+...+- ..+.-++..-+.++++.++..=.+ ||-.++
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHccChHHHHHHHhCcchhccccchhhH
Confidence 4444555555555555556666666666666633222221 111122223344455555443333 788888
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHH
Q 038758 165 NAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 165 ~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
+.+|+.+.+.+++.+|.++...|.
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHH
Confidence 888888888888888888777765
No 310
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.58 E-value=30 Score=27.83 Aligned_cols=72 Identities=11% Similarity=0.034 Sum_probs=54.1
Q ss_pred cHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh---cc----ccchhhHHHHH
Q 038758 67 VCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM---DQ----DFLVNNSLIDF 139 (354)
Q Consensus 67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~----~~~~~~~li~~ 139 (354)
|.+..++.+.+.+.++++.+..+.=++.+ +.|..+...++..+|-.|++++|..-++-. .| ....|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44556677788889999999888877765 667788889999999999999998766655 22 33455555554
No 311
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=78.42 E-value=39 Score=28.39 Aligned_cols=126 Identities=11% Similarity=0.074 Sum_probs=84.8
Q ss_pred CchhHHHHHhccCCC-----CChhhhHHHHHHHHh-CC-ChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccc
Q 038758 144 RYLKVSHCKFSKIKQ-----KDLVSWNAMLAGYAL-GG-FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKL 216 (354)
Q Consensus 144 ~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~-~~-~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~ 216 (354)
..+.+|.++|+.... .|..+-..+++.... .+ ....-.++.+-+.. ..|-.++..+...+++.+++.+++..
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~-t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVS-TFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHh-ccccCCChhHHHHHHHHHHhcccHHH
Confidence 345667777773221 355555566665554 22 23344455555542 45678888999999999999999999
Q ss_pred cchhhhHhhhh-ccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHH-----HHHcCcCCCHhh
Q 038758 217 GKAIHGYVLRH-HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRD-----VIVANVKPNTVT 290 (354)
Q Consensus 217 a~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-----m~~~g~~p~~~t 290 (354)
..++++..... +. ..|...|..+|+...+.|+..-...+..+ +++.|+..+...
T Consensus 221 l~~fW~~~~~~~~~--------------------~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L 280 (292)
T PF13929_consen 221 LFQFWEQCIPNSVP--------------------GNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDEL 280 (292)
T ss_pred HHHHHHHhcccCCC--------------------CCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHH
Confidence 99998776655 33 56889999999999999998776666544 233455555443
No 312
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=78.20 E-value=13 Score=27.74 Aligned_cols=62 Identities=13% Similarity=0.053 Sum_probs=26.5
Q ss_pred HHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCCh
Q 038758 54 YLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM 116 (354)
Q Consensus 54 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 116 (354)
+.+++.|++++.. =..++..+...++.-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 3344444444333 3334444444444444555555555444333333333333444444443
No 313
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=77.30 E-value=18 Score=31.96 Aligned_cols=94 Identities=7% Similarity=-0.056 Sum_probs=62.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC---CcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKG---VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLD 108 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 108 (354)
.|..=-.-..+.|++..|.+.+.+....+ ++|+...|.....+..+.|+.++|..--+...+.+ +--+..+..-..
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~ 329 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRAN 329 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHH
Confidence 33333444567899999999999987653 45566666666677778889988888777766442 111223333344
Q ss_pred HHHhcCChhHHHHHHHhh
Q 038758 109 LFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 109 ~~~~~g~~~~a~~~~~~~ 126 (354)
++...+++++|.+-|++.
T Consensus 330 c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566668888888888776
No 314
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=77.23 E-value=12 Score=21.70 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=30.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHH
Q 038758 260 ISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297 (354)
Q Consensus 260 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 297 (354)
+....+.|-.+++..++++|.+.|+..+...|..++.-
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 33446678889999999999999999998887776653
No 315
>PHA02875 ankyrin repeat protein; Provisional
Probab=77.18 E-value=54 Score=29.33 Aligned_cols=138 Identities=10% Similarity=0.085 Sum_probs=76.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCcCCccc--HHHHHHHHhccCChhhHHHHHHHHHHhccCCCce--ehhhHHHHHHhc
Q 038758 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFV--CPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC--VKRPLLDLFIKC 113 (354)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~ 113 (354)
...++.|+.+-+.. +.+.|..|+... -.+.+...+..|+.+ +.+.+.+.|..|+.. ...+.+...+..
T Consensus 7 ~~A~~~g~~~iv~~----Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 7 CDAILFGELDIARR----LLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHHhCCHHHHHH----HHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHC
Confidence 34455677655444 445677666543 233444555667765 455556677666543 223456677788
Q ss_pred CChhHHHHHHHhhccc----cchhhHHHHHHHhcCchhHHHHHhccCCCCCh---hhhHHHHHHHHhCCChhHHHHHH
Q 038758 114 GRMEITSGLFEEMDQD----FLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL---VSWNAMLAGYALGGFREEVTNLL 184 (354)
Q Consensus 114 g~~~~a~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~ 184 (354)
|+.+.+..+++.-... ...-.+.+...+..|+.+-+..+++.-..++. .-.+. +...+..|+.+-+.-++
T Consensus 79 g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tp-Lh~A~~~~~~~~v~~Ll 155 (413)
T PHA02875 79 GDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSP-LHLAVMMGDIKGIELLI 155 (413)
T ss_pred CCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHH
Confidence 9988888777653111 01112445556677888877777776554332 22333 33445667765444333
No 316
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=77.11 E-value=33 Score=26.78 Aligned_cols=216 Identities=14% Similarity=0.017 Sum_probs=139.3
Q ss_pred cCChhHHHHHHHHHHhCCCc-CCcccHHHHHHHHhccCChhhHHHHHHHHHHh-ccCCCceehhhHHHHHHhcCChhHHH
Q 038758 43 LGYYEEIVNLFYLMIDKGVR-PDHFVCPKVYKACSELKDYRVGKDVYDYMISI-KFEGNACVKRPLLDLFIKCGRMEITS 120 (354)
Q Consensus 43 ~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~ 120 (354)
.+....+...+......... .....+......+...+++..+...+...... ........+..+...+...++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45666666666666654322 13566777777888888999888888887753 33455566777777888888888888
Q ss_pred HHHHhhc---ccc-chhhHHHH-HHHhcCchhHHHHHhccCCCCC------hhhhHHHHHHHHhCCChhHHHHHHHHHHh
Q 038758 121 GLFEEMD---QDF-LVNNSLID-FYAKCRYLKVSHCKFSKIKQKD------LVSWNAMLAGYALGGFREEVTNLLDEMEM 189 (354)
Q Consensus 121 ~~~~~~~---~~~-~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 189 (354)
+.+.... +.. ........ .+...|+++.|...+++....+ ...+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~- 194 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL- 194 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH-
Confidence 8888872 222 22333333 6888999999999988764322 1223333334566788999999998885
Q ss_pred hhcCCCC-CcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCC
Q 038758 190 IQTDMQP-NTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268 (354)
Q Consensus 190 ~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 268 (354)
. .... ....+..+-..+...++.+.+...+........ .....+..+...+...+.
T Consensus 195 -~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~ 251 (291)
T COG0457 195 -K-LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP---------------------DNAEALYNLALLLLELGR 251 (291)
T ss_pred -h-hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc---------------------ccHHHHhhHHHHHHHcCC
Confidence 2 2222 355566666666666666666666665555432 112334444444446777
Q ss_pred HHHHHHHHHHHHHc
Q 038758 269 VVDALDLLRDVIVA 282 (354)
Q Consensus 269 ~~~a~~~~~~m~~~ 282 (354)
.+++...+.+....
T Consensus 252 ~~~~~~~~~~~~~~ 265 (291)
T COG0457 252 YEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHHh
Confidence 88998888888754
No 317
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.70 E-value=8.4 Score=19.79 Aligned_cols=28 Identities=11% Similarity=0.274 Sum_probs=23.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038758 255 VWNSIISAFVRSGQVVDALDLLRDVIVA 282 (354)
Q Consensus 255 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (354)
+|..+-..|...|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4667788899999999999999998753
No 318
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.39 E-value=7.8 Score=30.49 Aligned_cols=72 Identities=10% Similarity=0.031 Sum_probs=45.8
Q ss_pred HHHHhcCChhHHHHHHHhhccc-----cchhhHHHHHHHhcCchhHHHHHhccCC-------CCChhhhHHHHHHHHhCC
Q 038758 108 DLFIKCGRMEITSGLFEEMDQD-----FLVNNSLIDFYAKCRYLKVSHCKFSKIK-------QKDLVSWNAMLAGYALGG 175 (354)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~~ 175 (354)
-.+.+.|| +.|.+.|-.++.+ +.....|...|. ..|.+++..++.... .+|+..+..|.+.+.+.|
T Consensus 115 y~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~ 192 (203)
T PF11207_consen 115 YHWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLK 192 (203)
T ss_pred HHhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 34556666 5666677777332 223334444444 667777777765443 367788888999999888
Q ss_pred ChhHHH
Q 038758 176 FREEVT 181 (354)
Q Consensus 176 ~~~~a~ 181 (354)
+++.|.
T Consensus 193 ~~e~AY 198 (203)
T PF11207_consen 193 NYEQAY 198 (203)
T ss_pred chhhhh
Confidence 888774
No 319
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=76.37 E-value=14 Score=27.58 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=24.7
Q ss_pred HHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758 86 DVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 86 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
++.+.+++.|++++.. -..++..+.+.++.-.|.++++++
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l 46 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEEL 46 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHH
Confidence 4445556666655543 345666666666667777777777
No 320
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.21 E-value=24 Score=30.28 Aligned_cols=131 Identities=12% Similarity=-0.010 Sum_probs=91.0
Q ss_pred hhhHhhhhh----hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHH----HHHHhccCChhhHHHHHHHHHHh
Q 038758 23 GSQLLEVFC----NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKV----YKACSELKDYRVGKDVYDYMISI 94 (354)
Q Consensus 23 ~~~li~~~~----~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l----l~~~~~~~~~~~a~~~~~~m~~~ 94 (354)
|..|+.-|. +++-.=+++.-.|+.+.....+++.... -.||...|.-+ --++...|-+++|++.-++..+.
T Consensus 126 wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqi 204 (491)
T KOG2610|consen 126 WDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQI 204 (491)
T ss_pred HHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccC
Confidence 444444443 6666667888889999999999888654 13454443332 23344788999999988887776
Q ss_pred ccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccc--------hhhHHHHHHHhcCchhHHHHHhcc
Q 038758 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFL--------VNNSLIDFYAKCRYLKVSHCKFSK 155 (354)
Q Consensus 95 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--------~~~~li~~~~~~~~~~~a~~~~~~ 155 (354)
+ +.|.....++...+-..|++.++.++..+-+.+-. -|=...-.+...+.++.|+.+|+.
T Consensus 205 N-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 205 N-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred C-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 5 66777888899999999999999999887632211 111223345666899999999864
No 321
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=75.36 E-value=26 Score=29.30 Aligned_cols=54 Identities=4% Similarity=-0.092 Sum_probs=38.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHH-------HHHHHhhhhcCccccchhh
Q 038758 166 AMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLS-------GVLAACAQVKGVKLGKAIH 221 (354)
Q Consensus 166 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~-------~ll~~~~~~~~~~~a~~~~ 221 (354)
-+.+-.++.+++++|...|.+.. ..|+..+..+.+ .+.+.|.+.|+.....+..
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL--~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRIL--GKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHh--cCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 34566778899999999999998 888887765543 4555666677665544443
No 322
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=75.10 E-value=3 Score=35.50 Aligned_cols=44 Identities=25% Similarity=0.379 Sum_probs=25.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCcCC-CHhhHHHHHHHhhccCcccCc
Q 038758 262 AFVRSGQVVDALDLLRDVIVANVKP-NTVTIVSVLPACLKLAALPQG 307 (354)
Q Consensus 262 ~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~~ 307 (354)
-|.++|.+++|+..|..-.+. .| |.+++..-..+|.+...+..+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~A 150 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQA 150 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHH
Confidence 456666666666666655432 34 556666656666655554443
No 323
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.10 E-value=6 Score=22.45 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=16.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHH
Q 038758 167 MLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 167 li~~~~~~~~~~~a~~~~~~m~ 188 (354)
+..+|...|+.+.|.+++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 5567777777777777777775
No 324
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.83 E-value=8.9 Score=21.77 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=22.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038758 258 SIISAFVRSGQVVDALDLLRDVIVAN 283 (354)
Q Consensus 258 ~li~~~~~~g~~~~a~~~~~~m~~~g 283 (354)
-+-.+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35688999999999999999999655
No 325
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=73.20 E-value=39 Score=28.65 Aligned_cols=79 Identities=9% Similarity=0.014 Sum_probs=62.2
Q ss_pred HHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhc----------CchhHHHHHhc
Q 038758 85 KDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKC----------RYLKVSHCKFS 154 (354)
Q Consensus 85 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~----------~~~~~a~~~~~ 154 (354)
.++++.|.+.++.|.-..+.=+--.+.+.=.+..+..+|+.+-.|..-|..|+..||.. |++....++++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLLQ 342 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQRFDFLLYICCSMLILVRERILEGDFTVNMKLLQ 342 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHh
Confidence 46888888889999988888787888899999999999999977777788877777643 77777777777
Q ss_pred cCCCCChhh
Q 038758 155 KIKQKDLVS 163 (354)
Q Consensus 155 ~~~~~~~~~ 163 (354)
.-+..|..+
T Consensus 343 ~yp~tdi~~ 351 (370)
T KOG4567|consen 343 NYPTTDISK 351 (370)
T ss_pred cCCCCCHHH
Confidence 765544443
No 326
>PHA02940 hypothetical protein; Provisional
Probab=73.11 E-value=49 Score=26.89 Aligned_cols=95 Identities=8% Similarity=-0.062 Sum_probs=62.5
Q ss_pred HHHHHHHhccccchhhhhhHhhhhh-----hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCCh
Q 038758 7 VHAHLIVCGVELCAFLGSQLLEVFC-----NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY 81 (354)
Q Consensus 7 ~~~~~~~~g~~~~~~~~~~li~~~~-----~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 81 (354)
+++.|. +-+.|++..-+.++-.|. +-..+...|.+.++.++-..+.+++.+. +. ..+..--...++
T Consensus 115 l~~~i~-~~ik~~~~~t~~~~i~FtqkA~dtv~~la~~yvq~vk~d~r~~~a~~l~ke-Ls-------~~~d~~enepdl 185 (315)
T PHA02940 115 LLRLIR-SFIKPEPTLTTPLFIDFTQKAKDTVILLAGRYVQDVKKDDRRTIANKLSKE-LS-------WTIDYQENEPDL 185 (315)
T ss_pred HHHHHH-HhCCCCCCcCchHHHHHHHHhhhHHHHHHHHHHHHccccHHHHHHHHHHhh-hh-------HHHHHHhcCcch
Confidence 344444 447887777777776666 7777888888888888877666666542 11 112222344567
Q ss_pred hhHHHHHHHHHHhccCCCceehhhHHHHH
Q 038758 82 RVGKDVYDYMISIKFEGNACVKRPLLDLF 110 (354)
Q Consensus 82 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 110 (354)
+...+-++.+.+.+-.....+|+.|..++
T Consensus 186 e~d~keie~~lE~~~dl~rGtY~vL~~al 214 (315)
T PHA02940 186 ESDFKEIEEELEEKDDLSRGTYKVLKRAL 214 (315)
T ss_pred hhhHHHHHHHHhccchhhhhHHHHHHHHH
Confidence 77777788887776667777888887654
No 327
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.94 E-value=72 Score=31.67 Aligned_cols=63 Identities=16% Similarity=0.262 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCC-CC---cchHHHHHHHhhhhcCc--cccchhhhHhhhh
Q 038758 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ-PN---TISLSGVLAACAQVKGV--KLGKAIHGYVLRH 227 (354)
Q Consensus 162 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-p~---~~t~~~ll~~~~~~~~~--~~a~~~~~~~~~~ 227 (354)
.-|..|+.-|...|+.++|+++|.+.. . +.. -| ...+..++..+-+.+.. +...+.-+.+.+.
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~--d-~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~ 573 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLV--D-EDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNK 573 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHh--c-cccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhcc
Confidence 358899999999999999999999985 2 221 11 22344466666666654 4444444444443
No 328
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=71.82 E-value=66 Score=27.84 Aligned_cols=68 Identities=12% Similarity=0.094 Sum_probs=41.8
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHH
Q 038758 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKS 331 (354)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 331 (354)
...+|..+...+-+.|+++.|...+.++...+..++.. .+.+.-.-.+.+...|+.++|
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~---------------------~~~v~~e~akllw~~g~~~~A 203 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL---------------------LPRVFLEYAKLLWAQGEQEEA 203 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC---------------------CcchHHHHHHHHHHcCCHHHH
Confidence 45677788888888888888888888887543221110 111133345566666776777
Q ss_pred HHHhhcCCC
Q 038758 332 RKIFVLMPH 340 (354)
Q Consensus 332 ~~~~~~m~~ 340 (354)
...+++..+
T Consensus 204 i~~L~~~~~ 212 (352)
T PF02259_consen 204 IQKLRELLK 212 (352)
T ss_pred HHHHHHHHH
Confidence 766655443
No 329
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=71.81 E-value=30 Score=23.86 Aligned_cols=55 Identities=20% Similarity=0.189 Sum_probs=38.9
Q ss_pred cchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHH
Q 038758 235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292 (354)
Q Consensus 235 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 292 (354)
.|++++|..+.+....||...|-+|-. -+.|..+++..-+-+|..+| .|....|.
T Consensus 52 rG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 52 RGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred cchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 456666666666666889988877655 46677788888888888777 56655553
No 330
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=71.40 E-value=9.6 Score=32.03 Aligned_cols=43 Identities=26% Similarity=0.301 Sum_probs=35.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHH
Q 038758 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295 (354)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 295 (354)
...||.-|..-.+.||+++|+.++++.++.|..--..+|...+
T Consensus 257 e~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 257 ESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 3458899999999999999999999999999876666654433
No 331
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=71.36 E-value=26 Score=29.24 Aligned_cols=87 Identities=11% Similarity=0.143 Sum_probs=48.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcc
Q 038758 168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQ 247 (354)
Q Consensus 168 i~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 247 (354)
|.+++..++|.+++...-+--.....++|.. ....|-.|.+.+.+..+.++-..-++..-
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~------------------ 149 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPS------------------ 149 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcc------------------
Confidence 6777777888777766544431123344433 33444446677777666665554444322
Q ss_pred cCCCCcchHHHHHHHHHh-----cCCHHHHHHHH
Q 038758 248 LSTRDVVVWNSIISAFVR-----SGQVVDALDLL 276 (354)
Q Consensus 248 ~~~~~~~~~~~li~~~~~-----~g~~~~a~~~~ 276 (354)
..+..-|.++...|.. .|.+++|+++.
T Consensus 150 --Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 150 --NQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred --cCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 2334446666555544 47777777665
No 332
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=71.09 E-value=21 Score=23.75 Aligned_cols=35 Identities=6% Similarity=0.031 Sum_probs=15.7
Q ss_pred ccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCCh
Q 038758 77 ELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM 116 (354)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 116 (354)
..|+.+.|.+++..+. +| +..|..+++++...|.-
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHH 82 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCch
Confidence 3344555555555444 22 22344444444444443
No 333
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.97 E-value=14 Score=29.03 Aligned_cols=52 Identities=8% Similarity=-0.022 Sum_probs=38.8
Q ss_pred HhccCChhhHHHHHHHHHHh-ccCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758 75 CSELKDYRVGKDVYDYMISI-KFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 75 ~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
....++.+......+...+. ...|++.+|..++.++...|+.++|.+...++
T Consensus 118 ~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 118 ARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33555665555555555543 45799999999999999999999999888776
No 334
>PF13934 ELYS: Nuclear pore complex assembly
Probab=69.97 E-value=58 Score=26.44 Aligned_cols=101 Identities=6% Similarity=-0.004 Sum_probs=62.3
Q ss_pred HHHHHHHHh--ccCChhhHHHHHHHHHHhccCCCc-eeh-hhHHHHHHhcCChhHHHHHHHhhccccchhhHH--HHHHH
Q 038758 68 CPKVYKACS--ELKDYRVGKDVYDYMISIKFEGNA-CVK-RPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSL--IDFYA 141 (354)
Q Consensus 68 ~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~~~~~-~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~l--i~~~~ 141 (354)
|..+++++- ..++++.|.+.+- .|+. .++ .-++.++...|+.+.|.+++....|...+...+ .....
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~-------~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~L 151 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLS-------HPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVAL 151 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhC-------CCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 555555544 4456666666652 2222 222 357778888888888888888887776666332 22336
Q ss_pred hcCchhHHHHHhccCCCCC-hhhhHHHHHHHHhCC
Q 038758 142 KCRYLKVSHCKFSKIKQKD-LVSWNAMLAGYALGG 175 (354)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~-~~~~~~li~~~~~~~ 175 (354)
.++.+.+|...-+...++. ...+..++..+....
T Consensus 152 a~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 152 ANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 6678888888777766532 345666666665433
No 335
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.37 E-value=17 Score=26.13 Aligned_cols=43 Identities=7% Similarity=0.094 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758 84 GKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 84 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
..+-++.+...++.|++.+...-++++.+.+|+..|.++|+-+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~i 110 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAI 110 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3444555555555565555555566666666666666665555
No 336
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=69.36 E-value=1e+02 Score=29.58 Aligned_cols=199 Identities=12% Similarity=0.072 Sum_probs=88.7
Q ss_pred HHHHHHHhcCchhHHHHHhccCC---CCChhhhHHHHHHHHhCCCh-------hHHHHHHHHHHhhhcCCCCCcc---hH
Q 038758 135 SLIDFYAKCRYLKVSHCKFSKIK---QKDLVSWNAMLAGYALGGFR-------EEVTNLLDEMEMIQTDMQPNTI---SL 201 (354)
Q Consensus 135 ~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~-------~~a~~~~~~m~~~~~~~~p~~~---t~ 201 (354)
++|--+.|+|++++|.++..+.. +.....+-..+..|....+- ++...-|+... ......|.+ .|
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~--r~~~~~DpyK~AvY 193 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRI--RNSTDGDPYKRAVY 193 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHT--TT-TTS-HHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh--cCCCCCChHHHHHH
Confidence 57788889999999999994333 24556677788888776432 24444455443 222222332 23
Q ss_pred HHHHHHhhhhc--Cc-cccchhhhHhhh----hcccccc--------ccchhHHHHHHhcccC-CCCcchHHHHHHHHHh
Q 038758 202 SGVLAACAQVK--GV-KLGKAIHGYVLR----HHIHLST--------ACGFVICSCSVFNQLS-TRDVVVWNSIISAFVR 265 (354)
Q Consensus 202 ~~ll~~~~~~~--~~-~~a~~~~~~~~~----~~~~~~~--------~~~~~~~a~~~~~~~~-~~~~~~~~~li~~~~~ 265 (354)
.++ +.|... .. +-+..+-+.+.- ....... ...++...+.-|..-. .+ ....-.....+.-
T Consensus 194 ~il--g~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~-~~~p~~Yf~~LlL 270 (613)
T PF04097_consen 194 KIL--GRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNA-GSNPLLYFQVLLL 270 (613)
T ss_dssp HHH--HT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT-------HHHHHHH
T ss_pred HHH--hcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhccc-chhHHHHHHHHHH
Confidence 333 112111 11 212222222211 0000000 1122222222222111 11 1111223556667
Q ss_pred cCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc---------cccchhHHHHHHHHHHh---cCChhHHHH
Q 038758 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LGTGSFVWNALIDMYGR---CGAIQKSRK 333 (354)
Q Consensus 266 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~---------~~~~~~~~~~li~~~~~---~g~~~~A~~ 333 (354)
.|+++.|++.+-+ ..+...+.+.+...+.-+.-..-.+.. -.|...-+..||..|++ ..+..+|.+
T Consensus 271 tgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~td~~~Al~ 348 (613)
T PF04097_consen 271 TGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEITDPREALQ 348 (613)
T ss_dssp TT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTTTTT-HHHHHH
T ss_pred HhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhccCHHHHHH
Confidence 8999999999877 234466777776666655443322221 11222557788888875 557778888
Q ss_pred HhhcCCC
Q 038758 334 IFVLMPH 340 (354)
Q Consensus 334 ~~~~m~~ 340 (354)
.+--+..
T Consensus 349 Y~~li~~ 355 (613)
T PF04097_consen 349 YLYLICL 355 (613)
T ss_dssp HHHGGGG
T ss_pred HHHHHHH
Confidence 7766655
No 337
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=68.98 E-value=47 Score=27.78 Aligned_cols=10 Identities=0% Similarity=-0.213 Sum_probs=5.8
Q ss_pred CchhHHHHHh
Q 038758 144 RYLKVSHCKF 153 (354)
Q Consensus 144 ~~~~~a~~~~ 153 (354)
|.+++|+++.
T Consensus 172 G~~~eAeelv 181 (309)
T PF07163_consen 172 GHFSEAEELV 181 (309)
T ss_pred ccHHHHHHHH
Confidence 5555555555
No 338
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=68.52 E-value=34 Score=26.25 Aligned_cols=62 Identities=15% Similarity=0.088 Sum_probs=35.1
Q ss_pred HHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhH
Q 038758 56 MIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEI 118 (354)
Q Consensus 56 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 118 (354)
+++.|++++..- ..++..+...++.-.|.++++.+.+.+..++..|.---+..+...|-+..
T Consensus 17 L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 445566555543 24444444445555677777777666655555555555566666665543
No 339
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=67.98 E-value=49 Score=24.78 Aligned_cols=18 Identities=11% Similarity=0.194 Sum_probs=8.8
Q ss_pred hccCChhhHHHHHHHHHH
Q 038758 76 SELKDYRVGKDVYDYMIS 93 (354)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~ 93 (354)
...|++.+|.++|+.+.+
T Consensus 55 i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 55 IARGNYDEAARILRELLS 72 (153)
T ss_pred HHcCCHHHHHHHHHhhhc
Confidence 344555555555554443
No 340
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=67.91 E-value=1.5e+02 Score=30.42 Aligned_cols=20 Identities=15% Similarity=0.331 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCChhHHHHH
Q 038758 315 WNALIDMYGRCGAIQKSRKI 334 (354)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~ 334 (354)
...|+.++++.|..+.|.++
T Consensus 1187 ~~~Ll~~l~~~g~~eqa~~L 1206 (1265)
T KOG1920|consen 1187 LKRLLEVLVTFGMDEQARAL 1206 (1265)
T ss_pred HHHHHHHHHHcCCcHHHHHH
Confidence 44678888888888877655
No 341
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=67.89 E-value=18 Score=20.89 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=30.6
Q ss_pred HHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHH
Q 038758 169 AGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA 207 (354)
Q Consensus 169 ~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~ 207 (354)
....+.|-.+++..+++.|+ ..|+..+...|..+++-
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~--~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQ--QAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHcCChhhHHHHHHHHH--HcCcccCHHHHHHHHHH
Confidence 33457888889999999998 99999998888887753
No 342
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=67.45 E-value=6.3 Score=28.62 Aligned_cols=31 Identities=19% Similarity=0.316 Sum_probs=23.5
Q ss_pred hcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHH
Q 038758 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPA 297 (354)
Q Consensus 265 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 297 (354)
+.|.-.+|..+|++|.+.|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 346666899999999999999985 4455443
No 343
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=67.36 E-value=13 Score=31.08 Aligned_cols=53 Identities=9% Similarity=0.058 Sum_probs=27.5
Q ss_pred hhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccC
Q 038758 104 RPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKI 156 (354)
Q Consensus 104 ~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 156 (354)
+...+.|..+|.+.+|.++-++. +.+...|-.|+..+...||--.|.+-++++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34445555556666665555554 334445555555555555544444444433
No 344
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.19 E-value=54 Score=25.85 Aligned_cols=81 Identities=6% Similarity=-0.002 Sum_probs=53.2
Q ss_pred HHHHhcCChhHHHHHHHhh--ccccchhhH-----HHHHHHhcCchhHHHHHhccCCCCChhh--hHHHHHHHHhCCChh
Q 038758 108 DLFIKCGRMEITSGLFEEM--DQDFLVNNS-----LIDFYAKCRYLKVSHCKFSKIKQKDLVS--WNAMLAGYALGGFRE 178 (354)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~~--~~~~~~~~~-----li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~~~~~ 178 (354)
..+..+|++++|+.-++.. .+....+.. |.......|.+|+|.+.++....++-.. ...--..+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 3466677777777777754 233333333 3455667788888888888777654332 333446678888888
Q ss_pred HHHHHHHHHH
Q 038758 179 EVTNLLDEME 188 (354)
Q Consensus 179 ~a~~~~~~m~ 188 (354)
+|..-|+...
T Consensus 177 ~Ar~ay~kAl 186 (207)
T COG2976 177 EARAAYEKAL 186 (207)
T ss_pred HHHHHHHHHH
Confidence 8888888876
No 345
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=65.92 E-value=78 Score=26.37 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=10.6
Q ss_pred eehhhHHHHHHhcCChhHHHHHH
Q 038758 101 CVKRPLLDLFIKCGRMEITSGLF 123 (354)
Q Consensus 101 ~~~~~li~~~~~~g~~~~a~~~~ 123 (354)
.....+...|.+.|++..|+..|
T Consensus 91 ~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 91 ELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHH
Confidence 33444445555555555555443
No 346
>PF14162 YozD: YozD-like protein
Probab=65.67 E-value=19 Score=20.89 Aligned_cols=38 Identities=8% Similarity=0.033 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHH
Q 038758 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYN 41 (354)
Q Consensus 2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~ 41 (354)
+-|...+.++.++|+.|+..-..-+-+. ||..|+.-+.
T Consensus 12 EIAefFy~eL~kRGyvP~e~El~eiADI--tFeYll~K~i 49 (57)
T PF14162_consen 12 EIAEFFYHELVKRGYVPTEEELEEIADI--TFEYLLEKCI 49 (57)
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHH--HHHHHHHHHh
Confidence 3577889999999999998865555444 6766666554
No 347
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=65.15 E-value=1.3e+02 Score=28.74 Aligned_cols=85 Identities=13% Similarity=0.057 Sum_probs=53.4
Q ss_pred hcCChhHHHHHHHHHHhCC---CcCCcccHHHHHHHHh--ccCChhhHHHHHHHHHHhcc---------CCCceehhhHH
Q 038758 42 VLGYYEEIVNLFYLMIDKG---VRPDHFVCPKVYKACS--ELKDYRVGKDVYDYMISIKF---------EGNACVKRPLL 107 (354)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~---------~~~~~~~~~li 107 (354)
..+++..|.+.++.....- ..|-...+..++.+.. +.+..+.+.+..+.+..... .|...+|..++
T Consensus 151 ~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll 230 (608)
T PF10345_consen 151 QHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLL 230 (608)
T ss_pred hcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH
Confidence 3489999999998876542 2344445555555554 44556667777766643322 23455666666
Q ss_pred HHH--HhcCChhHHHHHHHhh
Q 038758 108 DLF--IKCGRMEITSGLFEEM 126 (354)
Q Consensus 108 ~~~--~~~g~~~~a~~~~~~~ 126 (354)
+.+ ...|+++.+...+.++
T Consensus 231 ~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 231 DLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 554 4668877888877776
No 348
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=64.88 E-value=67 Score=25.27 Aligned_cols=133 Identities=8% Similarity=0.004 Sum_probs=0.0
Q ss_pred HhccccchhhhhhHhhhhh-----------------------------------------------------hHHHHHHH
Q 038758 13 VCGVELCAFLGSQLLEVFC-----------------------------------------------------NWTSMMGM 39 (354)
Q Consensus 13 ~~g~~~~~~~~~~li~~~~-----------------------------------------------------~y~~li~~ 39 (354)
+.|..+++..++-++..+. .|-++=.+
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~g 80 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMG 80 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhh
Q ss_pred HHhcCChhHHHHHHHHHHhCCCcCCccc-HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhH
Q 038758 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFV-CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEI 118 (354)
Q Consensus 40 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 118 (354)
+-+.+++++.-........++.+-.... |.....+-++...-+++.+.+---.... +|-.|.+.-++.+
T Consensus 81 ce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiGiS----------~m~~Yhk~~qW~K 150 (233)
T PF14669_consen 81 CEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIGIS----------LMYSYHKTLQWSK 150 (233)
T ss_pred cCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHHHH----------HHHHHHHHHHHHH
Q ss_pred HHHHHHhh-------------------ccccchhhHHHHHHHhcCchhHHHHHhcc
Q 038758 119 TSGLFEEM-------------------DQDFLVNNSLIDFYAKCRYLKVSHCKFSK 155 (354)
Q Consensus 119 a~~~~~~~-------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 155 (354)
..++++.| .+.-..-|.....+.+.|.+|.|..++++
T Consensus 151 GrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 151 GRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 349
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=64.67 E-value=28 Score=29.25 Aligned_cols=54 Identities=13% Similarity=0.038 Sum_probs=24.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHH
Q 038758 37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91 (354)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 91 (354)
-+.|..+|.+.+|.++-++..+.+ +.+...+..|+..+...||--.+.+-++.+
T Consensus 286 a~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344444455555555544444432 334444444455555555444444444433
No 350
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=64.65 E-value=1.2e+02 Score=28.04 Aligned_cols=159 Identities=11% Similarity=0.074 Sum_probs=78.9
Q ss_pred CcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh---ccccchhhHHHHHH
Q 038758 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM---DQDFLVNNSLIDFY 140 (354)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~li~~~ 140 (354)
|.....+++..++..-+.+.+..+-.+|...| .+...|..++.+|... ..+....+++++ .-+..+...-+--+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 44445556666665555555556666655542 3444555666666665 344555555533 22222222222222
Q ss_pred HhcCchhHHHHHhccCCC------CCh---hhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhh
Q 038758 141 AKCRYLKVSHCKFSKIKQ------KDL---VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211 (354)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~------~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~ 211 (354)
...++.+.+...|.+... .+. ..|.-+...- ..+.+..+.+...++. ..|..--...+.-+-.-|...
T Consensus 142 yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt-~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 142 YEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQT-KLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHH-hhccchHHHHHHHHHHHhccc
Confidence 222455555444443321 011 1233333211 2455666666666653 344444455555555666666
Q ss_pred cCccccchhhhHhhhhc
Q 038758 212 KGVKLGKAIHGYVLRHH 228 (354)
Q Consensus 212 ~~~~~a~~~~~~~~~~~ 228 (354)
.+++++.++...+++..
T Consensus 219 eN~~eai~Ilk~il~~d 235 (711)
T COG1747 219 ENWTEAIRILKHILEHD 235 (711)
T ss_pred cCHHHHHHHHHHHhhhc
Confidence 67777777776666554
No 351
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=64.17 E-value=12 Score=31.55 Aligned_cols=44 Identities=20% Similarity=0.214 Sum_probs=35.0
Q ss_pred CChhh-hHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHH
Q 038758 159 KDLVS-WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGV 204 (354)
Q Consensus 159 ~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~l 204 (354)
||..+ ||..|....+.||+++|+++++|.+ ..|+.--..+|-.-
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe--~LG~~~Ar~tFik~ 298 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAE--RLGSTSARSTFISS 298 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCchHHHHHHHH
Confidence 45444 7799999999999999999999999 88887655555443
No 352
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.47 E-value=88 Score=26.13 Aligned_cols=155 Identities=12% Similarity=0.143 Sum_probs=96.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC---CC--cCCcccHHHHHHHHhccCChhhHHHHHHHHHHh-----ccCCCce
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK---GV--RPDHFVCPKVYKACSELKDYRVGKDVYDYMISI-----KFEGNAC 101 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~~ 101 (354)
+.-.+|..+.+.|++++..+.+.+|..- .+ .-+..+.|+++..-....+.+....+|+.-.+. +-..--.
T Consensus 67 ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK 146 (440)
T KOG1464|consen 67 ALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK 146 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence 4557788889999999999888887542 11 234456778887766666666666665544332 1111123
Q ss_pred ehhhHHHHHHhcCChhHHHHHHHhh----------------ccccchhhHHHHHHHhcCchhHHHHHhccCCC-----CC
Q 038758 102 VKRPLLDLFIKCGRMEITSGLFEEM----------------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-----KD 160 (354)
Q Consensus 102 ~~~~li~~~~~~g~~~~a~~~~~~~----------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~ 160 (354)
|-+.|...|...|++.+..+++.++ ..-...|..=|..|....+-+....++++... |.
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 4456788888889999988888888 12235677777888877777777777765542 33
Q ss_pred hhhhHHHHHH-----HHhCCChhHHHH-HHHHH
Q 038758 161 LVSWNAMLAG-----YALGGFREEVTN-LLDEM 187 (354)
Q Consensus 161 ~~~~~~li~~-----~~~~~~~~~a~~-~~~~m 187 (354)
+.... +|.- ..+.|++++|.. +|+..
T Consensus 227 PlImG-vIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 227 PLIMG-VIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred hHHHh-HHHHcCCccccccchHHHHHhHHHHHH
Confidence 33322 2222 344577777643 34433
No 353
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=63.24 E-value=40 Score=22.52 Aligned_cols=66 Identities=9% Similarity=-0.020 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHH
Q 038758 84 GKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150 (354)
Q Consensus 84 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 150 (354)
+.++++.+.+.| ..+......+-.+-...|+.+.|.+++..++.....|...++++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~-ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQG-LLTEEDRNRIEAATENHGNESGARELLKRIVQKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHhccccCcHHHHHHHHHHhccCCcHHHHHHHHHHHcCchhhhh
Confidence 456777777766 333333333333334568888888888888866777788888888877766554
No 354
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.93 E-value=70 Score=24.80 Aligned_cols=119 Identities=12% Similarity=-0.007 Sum_probs=84.0
Q ss_pred HHhcCChhHHHHHHHHHHhCCCcCCccc-HHHHHHHHhccCChhhHHHHHHHHHHhccCCCce-ehhhH--HHHHHhcCC
Q 038758 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFV-CPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC-VKRPL--LDLFIKCGR 115 (354)
Q Consensus 40 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l--i~~~~~~g~ 115 (354)
+.+.+..++|+.-|..+.+.|..--... --..-......|+-..|...|++.-+....|-+. -..-| .-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 4677899999999999998875422221 1222334568899999999999987654444332 11112 223567899
Q ss_pred hhHHHHHHHhhccccchhh-----HHHHHHHhcCchhHHHHHhccCCC
Q 038758 116 MEITSGLFEEMDQDFLVNN-----SLIDFYAKCRYLKVSHCKFSKIKQ 158 (354)
Q Consensus 116 ~~~a~~~~~~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~~~~ 158 (354)
++.+....+.+..+..++. +|.-+-.+.|++.+|.+.|+++-.
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 9999999998855555553 566777899999999999998875
No 355
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=62.32 E-value=55 Score=25.12 Aligned_cols=55 Identities=9% Similarity=-0.009 Sum_probs=25.4
Q ss_pred HHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhc-----cccchhhHHHHHHHhcCch
Q 038758 91 MISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-----QDFLVNNSLIDFYAKCRYL 146 (354)
Q Consensus 91 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~li~~~~~~~~~ 146 (354)
+.+.|+.++..- ..++..+...++.-.|.++++.+. .+..|-..-+..+.+.|-+
T Consensus 17 L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344454444322 244444444455556666666662 1223333344555555543
No 356
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=61.69 E-value=58 Score=28.43 Aligned_cols=155 Identities=11% Similarity=0.012 Sum_probs=89.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC-----CCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhcc---C--CCce
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-----GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKF---E--GNAC 101 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~--~~~~ 101 (354)
+|-.|-+++-+..++.+++.+=+.-... | +..-....++-.++...+.++++.+.|+...+.-. . ....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~-~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG-QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc-cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 7777777777777777777776664332 3 22224455566677777777777777777665421 1 2345
Q ss_pred ehhhHHHHHHhcCChhHHHHHHHhh-------c-ccc-chh-----hHHHHHHHhcCchhHHHHHhccCCC-----CChh
Q 038758 102 VKRPLLDLFIKCGRMEITSGLFEEM-------D-QDF-LVN-----NSLIDFYAKCRYLKVSHCKFSKIKQ-----KDLV 162 (354)
Q Consensus 102 ~~~~li~~~~~~g~~~~a~~~~~~~-------~-~~~-~~~-----~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~ 162 (354)
++-.|-+.|.+..|+++|.-+..+. . .|. .-| -.+.-++-..|.+..|.+.-++..+ -|-.
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 6777777788888877776555443 1 011 011 1233345555666655555544332 2322
Q ss_pred h----hHHHHHHHHhCCChhHHHHHHHHH
Q 038758 163 S----WNAMLAGYALGGFREEVTNLLDEM 187 (354)
Q Consensus 163 ~----~~~li~~~~~~~~~~~a~~~~~~m 187 (354)
+ ...+.+.|-..|+.+.|+.-|++.
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 2 334556677778877777776654
No 357
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.37 E-value=96 Score=25.91 Aligned_cols=84 Identities=12% Similarity=0.175 Sum_probs=50.4
Q ss_pred hcCChhHHHHHHHHHHhCCCcCCcccH---HHHHHHHhccCChhhHHHHHHHHHHh---ccCC--CceehhhHHHHHHhc
Q 038758 42 VLGYYEEIVNLFYLMIDKGVRPDHFVC---PKVYKACSELKDYRVGKDVYDYMISI---KFEG--NACVKRPLLDLFIKC 113 (354)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~--~~~~~~~li~~~~~~ 113 (354)
+...+++|+.-|++..+...+.....| ..++....+.+++++....|.+|... .+.. +..+.|+++..-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 345778888888887765323333333 34567777888888888777777632 2222 234556666666666
Q ss_pred CChhHHHHHHHh
Q 038758 114 GRMEITSGLFEE 125 (354)
Q Consensus 114 g~~~~a~~~~~~ 125 (354)
.+.+-...+++.
T Consensus 119 ~~m~LLQ~FYeT 130 (440)
T KOG1464|consen 119 KNMDLLQEFYET 130 (440)
T ss_pred hhhHHHHHHHHH
Confidence 655555555543
No 358
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=61.32 E-value=35 Score=22.31 Aligned_cols=48 Identities=15% Similarity=0.113 Sum_probs=32.1
Q ss_pred hcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHH
Q 038758 265 RSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKI 334 (354)
Q Consensus 265 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 334 (354)
...+.++|+..|+...+.-..|.. -| .++..|+.+|+..|++.++.+.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~-rf---------------------~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDRED-RF---------------------RVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHH-HH---------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999998765333222 11 2366677888888888776643
No 359
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=60.83 E-value=22 Score=25.60 Aligned_cols=47 Identities=15% Similarity=0.283 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHh
Q 038758 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI 94 (354)
Q Consensus 48 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 94 (354)
+..+.++....-++.|+......-+++|.+.+|+..|.++|+-++..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34445555555677888888888888888888888888888887643
No 360
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=60.71 E-value=20 Score=30.78 Aligned_cols=45 Identities=11% Similarity=-0.057 Sum_probs=25.1
Q ss_pred HHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHH
Q 038758 138 DFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTN 182 (354)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~ 182 (354)
+-|.+.|.+++|+..|..... | +.+++..-..+|.+...+..|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHH
Confidence 445566666666666654432 3 55555555666666655554433
No 361
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=60.20 E-value=63 Score=23.41 Aligned_cols=49 Identities=8% Similarity=0.116 Sum_probs=24.7
Q ss_pred cCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHH
Q 038758 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYM 91 (354)
Q Consensus 43 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 91 (354)
.+...-.-.+++.+.+.++.-....+..+=..|.+..++.+|.++|+.+
T Consensus 76 ~R~VRlvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 76 NRLVRLVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred cchhhhHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHH
Confidence 3344444445555555554433444444444455555566666666554
No 362
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=59.68 E-value=58 Score=22.81 Aligned_cols=49 Identities=14% Similarity=0.045 Sum_probs=28.3
Q ss_pred HHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 138 DFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
..+.+.|++++|...=.....||...|-+|-. .+.|-.+++...+..+.
T Consensus 48 ~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 48 SSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp HHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 44556666666644444555577777765544 46777777777777774
No 363
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=58.83 E-value=67 Score=23.24 Aligned_cols=44 Identities=11% Similarity=0.328 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhc
Q 038758 271 DALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVL 337 (354)
Q Consensus 271 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 337 (354)
.+.++|+.|...|+--....| |......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~f-----------------------Y~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALF-----------------------YEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHH-----------------------HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHH-----------------------HHHHHHHHHHcCCHHHHHHHHHh
Confidence 999999999988876555443 88889999999999999999874
No 364
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.77 E-value=1.6e+02 Score=27.73 Aligned_cols=176 Identities=10% Similarity=0.048 Sum_probs=95.7
Q ss_pred hhHHHHHHHHHHhCCCcCCcccHHHHHH--H-HhccCChhhHHHHHHHHHH-------hccCCCceehhhHHHHHHhcC-
Q 038758 46 YEEIVNLFYLMIDKGVRPDHFVCPKVYK--A-CSELKDYRVGKDVYDYMIS-------IKFEGNACVKRPLLDLFIKCG- 114 (354)
Q Consensus 46 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~--~-~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~g- 114 (354)
...+.+.++...+.|.. .......++. + ....+|.+.|..+|+...+ .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 56788888888877622 2222222222 2 4466789999999999877 44 4446667777777754
Q ss_pred ----ChhHHHHHHHhhcc--ccchhhHHHHHHHh---cCchhHHHHHhccCCCC-ChhhhHHHHHHH--H--hCCChhHH
Q 038758 115 ----RMEITSGLFEEMDQ--DFLVNNSLIDFYAK---CRYLKVSHCKFSKIKQK-DLVSWNAMLAGY--A--LGGFREEV 180 (354)
Q Consensus 115 ----~~~~a~~~~~~~~~--~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~-~~~~~~~li~~~--~--~~~~~~~a 180 (354)
+.+.|..++...-. ....--.|...|.. ..+...|.+.|...-+. .+..+-.+..+| . -..+.+.|
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 55668887777621 11111222222222 24567788887766532 222222222221 1 22356778
Q ss_pred HHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcc
Q 038758 181 TNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI 229 (354)
Q Consensus 181 ~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 229 (354)
..++...- ..| .|...--...+..+.. ++.+.+...+..+.+.+.
T Consensus 384 ~~~~k~aA--~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 384 FAYYKKAA--EKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHH--Hcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 88887776 666 3332222222333333 666666666666666555
No 365
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=58.25 E-value=20 Score=17.04 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=22.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038758 255 VWNSIISAFVRSGQVVDALDLLRDVIV 281 (354)
Q Consensus 255 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (354)
.|..+...+...|++++|...|++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 466777888899999999999988874
No 366
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=57.99 E-value=52 Score=21.89 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=27.6
Q ss_pred HHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758 86 DVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 86 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
++|+.....|+..|..+|..++..+.-.=-++...+++..|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 66666666677777777777777666666666666666655
No 367
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.61 E-value=40 Score=26.44 Aligned_cols=58 Identities=14% Similarity=-0.019 Sum_probs=42.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC-CCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHh
Q 038758 37 MGMYNVLGYYEEIVNLFYLMIDK-GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI 94 (354)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 94 (354)
+......++.+......+.+.+. ...|+...|..++..+...|+.++|.++.+++...
T Consensus 115 l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 115 LLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33333555555555554444332 35799999999999999999999999999998865
No 368
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=57.31 E-value=1.2e+02 Score=25.84 Aligned_cols=179 Identities=12% Similarity=0.038 Sum_probs=83.8
Q ss_pred ccccchhhhhhHhhhhh---------hHHHHHHH-HHhcC-ChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhh
Q 038758 15 GVELCAFLGSQLLEVFC---------NWTSMMGM-YNVLG-YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRV 83 (354)
Q Consensus 15 g~~~~~~~~~~li~~~~---------~y~~li~~-~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 83 (354)
|+.++...--+++.+.. .++.|..- +.+.| -..-+.++|+..... -..+.+++.+.+.+.-+.
T Consensus 141 ~F~e~Er~KLA~~Tal~l~nGt~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~E------k~i~~lis~Lrkg~md~r 214 (412)
T KOG2297|consen 141 LFEENERKKLAMLTALLLSNGTLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVE------KDINDLISSLRKGKMDDR 214 (412)
T ss_pred ccCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhh------ccHHHHHHHHHhcChHhH
Confidence 56666665555555443 33333322 22223 123356666665432 135666666655443333
Q ss_pred HHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh--ccccchhhHHHHHHHhcCchhHHHHHh-ccCCC--
Q 038758 84 GKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM--DQDFLVNNSLIDFYAKCRYLKVSHCKF-SKIKQ-- 158 (354)
Q Consensus 84 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~-~~~~~-- 158 (354)
..++ ++|+..+-...-..+...|--+-..-.=.++ ......-..|.+-..+...+++..... ++|+.
T Consensus 215 Lmef--------fPpnkrs~E~Fak~Ft~agL~elvey~~~q~~~~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~n 286 (412)
T KOG2297|consen 215 LMEF--------FPPNKRSVEHFAKYFTDAGLKELVEYHRNQQSEGARKELQKELQEQVSEEDPVKEVILYVKEEMKRNN 286 (412)
T ss_pred HHHh--------cCCcchhHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcC
Confidence 3333 3777766666665555555332222111111 011111222333333444455444433 33432
Q ss_pred -CChh----hhHHHHHHHHhCCCh-hHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccc
Q 038758 159 -KDLV----SWNAMLAGYALGGFR-EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218 (354)
Q Consensus 159 -~~~~----~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 218 (354)
|+.. .|..+|++---+.+- --|.+.++..+ +|.-++.+++..|+.+...
T Consensus 287 lPe~eVi~ivWs~iMsaveWnKkeelva~qalrhlK-----------~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 287 LPETEVIGIVWSGIMSAVEWNKKEELVAEQALRHLK-----------QYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred CCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHHH-----------hhhHHHHHHhcCChHHHHH
Confidence 4443 467776663322111 12344444444 6888888888888766543
No 369
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=57.22 E-value=1.1e+02 Score=25.14 Aligned_cols=138 Identities=12% Similarity=0.161 Sum_probs=75.0
Q ss_pred HHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccc
Q 038758 137 IDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKL 216 (354)
Q Consensus 137 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~ 216 (354)
+..|.+.-++.-|-..++++.+| ..+-.+ +--|.+..+.+--.++.+-.+ ..++.-+......++ +...||..+
T Consensus 137 MEiyS~ttRFalaCN~s~KIiEP-IQSRCA-iLRysklsd~qiL~Rl~~v~k--~Ekv~yt~dgLeaii--fta~GDMRQ 210 (333)
T KOG0991|consen 137 MEIYSNTTRFALACNQSEKIIEP-IQSRCA-ILRYSKLSDQQILKRLLEVAK--AEKVNYTDDGLEAII--FTAQGDMRQ 210 (333)
T ss_pred HHHHcccchhhhhhcchhhhhhh-HHhhhH-hhhhcccCHHHHHHHHHHHHH--HhCCCCCcchHHHhh--hhccchHHH
Confidence 44555555555555555555443 111112 222344444433344444444 455555555555444 334555555
Q ss_pred cchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHh
Q 038758 217 GKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289 (354)
Q Consensus 217 a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 289 (354)
|...++.-... -....+..+|+-...|....-..++..+. .+++++|.+++.++-+.|+.|...
T Consensus 211 alNnLQst~~g--------~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 211 ALNNLQSTVNG--------FGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred HHHHHHHHhcc--------ccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH
Confidence 54444322211 11223445565555777777777777655 478999999999999999988653
No 370
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.97 E-value=1.2e+02 Score=29.38 Aligned_cols=42 Identities=17% Similarity=0.362 Sum_probs=31.6
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHh-hcCCC-----------CCcccHHHhhhh
Q 038758 311 GSFVWNALIDMYGRCGAIQKSRKIF-VLMPH-----------KNLVSWNVMISV 352 (354)
Q Consensus 311 ~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~-----------~~~~~~~~li~~ 352 (354)
....|.-++-.++|.|+..+|..+. +++.. .|..-|+.||+-
T Consensus 646 q~~~~~E~VYlLgrmGn~k~AL~lII~el~die~AIefvKeq~D~eLWe~LI~~ 699 (846)
T KOG2066|consen 646 QKNFYEELVYLLGRMGNAKEALKLIINELRDIEKAIEFVKEQDDSELWEDLINY 699 (846)
T ss_pred hhCcHHHHHHHHHhhcchHHHHHHHHHHhhCHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4456888899999999998888765 44443 677888888864
No 371
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=56.57 E-value=1.3e+02 Score=25.95 Aligned_cols=67 Identities=7% Similarity=-0.110 Sum_probs=46.6
Q ss_pred CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCC---CcchHHHHHHHhhhhcCccccchhhhHhhhh
Q 038758 159 KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP---NTISLSGVLAACAQVKGVKLGKAIHGYVLRH 227 (354)
Q Consensus 159 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 227 (354)
....+|..+...+.+.|.++.|...+..+. ..+..+ .......-.+..-..|+..+|...++...+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~--~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLF--QLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHh--ccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345678888899999999999999999887 433222 2333344455566677778888877777663
No 372
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=55.84 E-value=1.4e+02 Score=26.18 Aligned_cols=203 Identities=12% Similarity=0.075 Sum_probs=130.1
Q ss_pred hHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCcCC---cccHHHHHHHHhccCChhhHHHHHHHHHHh-ccCC
Q 038758 25 QLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDK--GVRPD---HFVCPKVYKACSELKDYRVGKDVYDYMISI-KFEG 98 (354)
Q Consensus 25 ~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~ 98 (354)
-++..|.+|..+..+.++.|.+++++..--.-.+. ..+-. -..|-.+-+++.+..++.+++.+-..-... |..|
T Consensus 38 ~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~ 117 (518)
T KOG1941|consen 38 DLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRA 117 (518)
T ss_pred HHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCc
Confidence 34444558999999999999988876532221111 11112 224556666777777778787776655533 2223
Q ss_pred C---ceehhhHHHHHHhcCChhHHHHHHHhh----------ccccchhhHHHHHHHhcCchhHHHHHhccCCC-------
Q 038758 99 N---ACVKRPLLDLFIKCGRMEITSGLFEEM----------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ------- 158 (354)
Q Consensus 99 ~---~~~~~~li~~~~~~g~~~~a~~~~~~~----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------- 158 (354)
. -...-++-.++.-.+.++++++.|+.. .....++-.|.+.|.+..|+++|.-+..+.-+
T Consensus 118 ~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l 197 (518)
T KOG1941|consen 118 GQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL 197 (518)
T ss_pred ccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc
Confidence 1 123445667777788999999999887 22456888999999999999988766543321
Q ss_pred CChhh-hH-----HHHHHHHhCCChhHHHHHHHHHHh--hhcCCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhh
Q 038758 159 KDLVS-WN-----AMLAGYALGGFREEVTNLLDEMEM--IQTDMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRH 227 (354)
Q Consensus 159 ~~~~~-~~-----~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 227 (354)
.|... |. .|.-++-..|...+|.+.-++.-+ ...|-+|. ....-.+...|...|+.+.+..-|++....
T Consensus 198 ~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 198 KDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred CchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 23221 22 344567778888888777766531 13455554 455667778899999999988877766543
No 373
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=55.02 E-value=1.1e+02 Score=24.71 Aligned_cols=29 Identities=3% Similarity=-0.081 Sum_probs=15.7
Q ss_pred chHHHHHHHhhhhcCccccchhhhHhhhh
Q 038758 199 ISLSGVLAACAQVKGVKLGKAIHGYVLRH 227 (354)
Q Consensus 199 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 227 (354)
.||--+-+-+...|+.++|..+|+.....
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 45555555555555555555555554443
No 374
>PRK09462 fur ferric uptake regulator; Provisional
Probab=54.56 E-value=62 Score=24.10 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCCh
Q 038758 81 YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM 116 (354)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 116 (354)
.-.|.++++.+.+.+...+..|.---+..+...|-+
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 444445555544444333333333333444444443
No 375
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=53.91 E-value=39 Score=21.11 Aligned_cols=50 Identities=8% Similarity=0.082 Sum_probs=38.1
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhc
Q 038758 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300 (354)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 300 (354)
.|....++.++...++..-.++++..+.+..+.|. .+..+|.--++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 56778899999999999999999999999999885 556665555554443
No 376
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.83 E-value=1.1e+02 Score=24.21 Aligned_cols=124 Identities=9% Similarity=-0.019 Sum_probs=69.2
Q ss_pred ccchhhHHHHHHHhcCchhHHHHHhccCCCCC-hhhhHHH-----HHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHH
Q 038758 129 DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD-LVSWNAM-----LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLS 202 (354)
Q Consensus 129 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~l-----i~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~ 202 (354)
-...|..++...... .. +.....+.+...+ ..+|..+ ...++..+++++|..-++... . .|....+.
T Consensus 53 AS~~Y~~~i~~~~ak-~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l--~---~t~De~lk 125 (207)
T COG2976 53 ASAQYQNAIKAVQAK-KP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL--A---QTKDENLK 125 (207)
T ss_pred HHHHHHHHHHHHhcC-Cc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--c---cchhHHHH
Confidence 345666666665422 22 3333333333322 4444433 345778889999988887665 2 23333344
Q ss_pred HHHHH-----hhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcch--HHHHHHHHHhcCCHHHHHHH
Q 038758 203 GVLAA-----CAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVV--WNSIISAFVRSGQVVDALDL 275 (354)
Q Consensus 203 ~ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~ 275 (354)
.++.- .... |.+++|+..++....++-.. ...--+.+...|+-++|..-
T Consensus 126 ~l~~lRLArvq~q~------------------------~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~a 181 (207)
T COG2976 126 ALAALRLARVQLQQ------------------------KKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAA 181 (207)
T ss_pred HHHHHHHHHHHHHh------------------------hhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHH
Confidence 43321 2223 44555555555444443222 22334678999999999999
Q ss_pred HHHHHHcC
Q 038758 276 LRDVIVAN 283 (354)
Q Consensus 276 ~~~m~~~g 283 (354)
|++....+
T Consensus 182 y~kAl~~~ 189 (207)
T COG2976 182 YEKALESD 189 (207)
T ss_pred HHHHHHcc
Confidence 99998875
No 377
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.69 E-value=2.5e+02 Score=28.21 Aligned_cols=112 Identities=13% Similarity=0.167 Sum_probs=59.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCC---cCCcccHHHHHHHHhccCCh--hhHHHHHHHHHHhccCCCceehhh-
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGV---RPDHFVCPKVYKACSELKDY--RVGKDVYDYMISIKFEGNACVKRP- 105 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p~~~~~~~ll~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~- 105 (354)
-|..|+-.|...|+.++|++++.+.....- .--...+..+++-+...+.- +.+.++-+...+..-.....+++.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 788888888888888888888888776320 00111133344444444433 444444444443322222222222
Q ss_pred -----------HHHHHHhcCChhHHHHHHHhh-----ccccchhhHHHHHHHhc
Q 038758 106 -----------LLDLFIKCGRMEITSGLFEEM-----DQDFLVNNSLIDFYAKC 143 (354)
Q Consensus 106 -----------li~~~~~~g~~~~a~~~~~~~-----~~~~~~~~~li~~~~~~ 143 (354)
-+-.|......+-+..+++.+ ..+....+.++..|+..
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 233455556666666666666 33445556666666544
No 378
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.49 E-value=2e+02 Score=27.06 Aligned_cols=91 Identities=9% Similarity=0.066 Sum_probs=65.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHh-ccCChhhHHHHHHHHHHhc---cCCCceehhhHHHHH
Q 038758 35 SMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACS-ELKDYRVGKDVYDYMISIK---FEGNACVKRPLLDLF 110 (354)
Q Consensus 35 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~ 110 (354)
.-|+.+.+.|.+..|+++-+-+.+....-|......+|+.|+ +.++++-.+++++.....+ ..||-.--.+|...|
T Consensus 347 r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~ 426 (665)
T KOG2422|consen 347 RYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFF 426 (665)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHH
Confidence 346667889999999999999988776667777888888877 7788999999998886543 456665555666667
Q ss_pred HhcCC---hhHHHHHHHh
Q 038758 111 IKCGR---MEITSGLFEE 125 (354)
Q Consensus 111 ~~~g~---~~~a~~~~~~ 125 (354)
..... -+.|...+.+
T Consensus 427 l~~~~~~~rqsa~~~l~q 444 (665)
T KOG2422|consen 427 LRKNEEDDRQSALNALLQ 444 (665)
T ss_pred HhcCChhhHHHHHHHHHH
Confidence 66655 3344444443
No 379
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=53.00 E-value=98 Score=24.19 Aligned_cols=58 Identities=12% Similarity=0.125 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC-CCc
Q 038758 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH-KNL 343 (354)
Q Consensus 269 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~ 343 (354)
.+.|+.+|+.+.+.--.| .+..-.|.-+. -...+-.|.+.|.+++|.+++++... |+.
T Consensus 85 LESAl~v~~~I~~E~~~~--~~lhe~i~~li---------------k~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~ 143 (200)
T cd00280 85 LESALMVLESIEKEFSLP--ETLHEEIRKLI---------------KEQAVAVCMENGEFKKAEEVLKRLFSDPES 143 (200)
T ss_pred HHHHHHHHHHHHHhcCCc--HHHHHHHHHHH---------------HHHHHHHHHhcCchHHHHHHHHHHhcCCCc
Confidence 567888888887653222 22222222221 33566789999999999999998765 443
No 380
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=52.93 E-value=1.8e+02 Score=26.31 Aligned_cols=74 Identities=9% Similarity=0.113 Sum_probs=47.2
Q ss_pred hcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc------------------ccchhHHHHHHhcccC---
Q 038758 191 QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST------------------ACGFVICSCSVFNQLS--- 249 (354)
Q Consensus 191 ~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------------~~~~~~~a~~~~~~~~--- 249 (354)
...+.||.++.+.+-..++..-..+-...+|+...+.+-+.-. ++..-++++++++.|+
T Consensus 176 tkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L 255 (669)
T KOG3636|consen 176 TKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQL 255 (669)
T ss_pred ccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhc
Confidence 4578899988888777776666666666666666555433222 6666777888888776
Q ss_pred -CCCcchHHHHHHHHH
Q 038758 250 -TRDVVVWNSIISAFV 264 (354)
Q Consensus 250 -~~~~~~~~~li~~~~ 264 (354)
..|+.-+-.|...|+
T Consensus 256 ~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 256 SVEDVPDFFSLAQYYS 271 (669)
T ss_pred ccccchhHHHHHHHHh
Confidence 224444555554444
No 381
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=52.83 E-value=99 Score=24.16 Aligned_cols=19 Identities=16% Similarity=0.506 Sum_probs=9.1
Q ss_pred HHhccCChhhHHHHHHHHH
Q 038758 74 ACSELKDYRVGKDVYDYMI 92 (354)
Q Consensus 74 ~~~~~~~~~~a~~~~~~m~ 92 (354)
.|.+.|.+++|.++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHhcCchHHHHHHHHHHh
Confidence 4444445555554444444
No 382
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=52.32 E-value=29 Score=21.38 Aligned_cols=30 Identities=13% Similarity=0.301 Sum_probs=23.4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038758 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIV 281 (354)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (354)
|....-.+|.+|...|++++|.+..+++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334455679999999999999999988864
No 383
>PRK09462 fur ferric uptake regulator; Provisional
Probab=51.68 E-value=68 Score=23.90 Aligned_cols=12 Identities=8% Similarity=0.279 Sum_probs=6.0
Q ss_pred ChhHHHHHHHhh
Q 038758 115 RMEITSGLFEEM 126 (354)
Q Consensus 115 ~~~~a~~~~~~~ 126 (354)
..-.|.++++.+
T Consensus 32 ~h~sa~eI~~~l 43 (148)
T PRK09462 32 HHVSAEDLYKRL 43 (148)
T ss_pred CCCCHHHHHHHH
Confidence 344555555554
No 384
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.44 E-value=1.7e+02 Score=25.70 Aligned_cols=195 Identities=13% Similarity=0.076 Sum_probs=107.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCc----ccHHHHHHHHhccCChhhHHHHHHHHHHh--ccCCCceehhh
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH----FVCPKVYKACSELKDYRVGKDVYDYMISI--KFEGNACVKRP 105 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ 105 (354)
.++.+-.++.+.+.......+..+.... ..|.. .....++..|.+.+++..+...++.-... +-.|....---
T Consensus 104 lc~~l~~~~~~~~~p~~gi~ii~~av~k-~~~~~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~f 182 (422)
T KOG2582|consen 104 LCHDLTEAVVKKNKPLRGIRIIMQAVDK-MQPSNGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYF 182 (422)
T ss_pred HHHHHHHHHHhcCCccccchHHHHHHHH-hccCccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHH
Confidence 6777777777777776655555554443 12222 12444566666777777665554432211 11111111111
Q ss_pred HHH------HHHhcCChhHHHHHHHhh--ccccchhhH--------HHHHHHhcCch--------hHHHHHhccCCCC--
Q 038758 106 LLD------LFIKCGRMEITSGLFEEM--DQDFLVNNS--------LIDFYAKCRYL--------KVSHCKFSKIKQK-- 159 (354)
Q Consensus 106 li~------~~~~~g~~~~a~~~~~~~--~~~~~~~~~--------li~~~~~~~~~--------~~a~~~~~~~~~~-- 159 (354)
|.- .|....++++|.-+++.. -|...+-.. ++-.+.-.|.+ ..|.+.|+-|..|
T Consensus 183 L~Y~yYgg~iciglk~fe~Al~~~e~~v~~Pa~~vs~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~pY~ 262 (422)
T KOG2582|consen 183 LLYLYYGGMICIGLKRFERALYLLEICVTTPAMAVSHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSNPYH 262 (422)
T ss_pred HHHHHhcceeeeccccHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCchHH
Confidence 111 133457999999999887 232222222 22233344555 4566777776632
Q ss_pred --------Chhh-hHHHHHH----HHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHH-H---HhhhhcCccccchhhh
Q 038758 160 --------DLVS-WNAMLAG----YALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL-A---ACAQVKGVKLGKAIHG 222 (354)
Q Consensus 160 --------~~~~-~~~li~~----~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll-~---~~~~~~~~~~a~~~~~ 222 (354)
++.+ ..+++.. +.+-+...-|...+..+. ++.+.-=..||.++= + ...+.+..+++.+..-
T Consensus 263 ef~~~Y~~~~~~eLr~lVk~~~~rF~kDnnt~l~k~av~sl~--k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Il 340 (422)
T KOG2582|consen 263 EFLNVYLKDSSTELRTLVKKHSERFTKDNNTGLAKQAVSSLY--KKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYIL 340 (422)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHH--HHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHH
Confidence 2222 5556544 455677778888888887 677766667777662 2 2234566677777666
Q ss_pred Hhhhhcc
Q 038758 223 YVLRHHI 229 (354)
Q Consensus 223 ~~~~~~~ 229 (354)
+|.+.|.
T Consensus 341 qmie~~~ 347 (422)
T KOG2582|consen 341 QMIEDGE 347 (422)
T ss_pred HHhccCc
Confidence 6666553
No 385
>PRK09687 putative lyase; Provisional
Probab=50.55 E-value=1.5e+02 Score=24.96 Aligned_cols=20 Identities=20% Similarity=0.099 Sum_probs=10.0
Q ss_pred CCChhhhHHHHHHHHhCCCh
Q 038758 158 QKDLVSWNAMLAGYALGGFR 177 (354)
Q Consensus 158 ~~~~~~~~~li~~~~~~~~~ 177 (354)
.++..+-...+.++.+.|+.
T Consensus 203 D~~~~VR~~A~~aLg~~~~~ 222 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDK 222 (280)
T ss_pred CCChHHHHHHHHHHHccCCh
Confidence 34444445555555555553
No 386
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=50.49 E-value=40 Score=23.71 Aligned_cols=47 Identities=9% Similarity=-0.048 Sum_probs=25.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChh
Q 038758 36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYR 82 (354)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 82 (354)
++..+...+..-.|.++++.+.+.+..++..|.-..|+.+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 34444444555566666666666655555555555555555555433
No 387
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=48.70 E-value=52 Score=23.14 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=11.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC
Q 038758 37 MGMYNVLGYYEEIVNLFYLMIDKG 60 (354)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~~~ 60 (354)
|..+.+....++|+++++.|.++|
T Consensus 68 iD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 333444444445555555555444
No 388
>PRK13342 recombination factor protein RarA; Reviewed
Probab=48.62 E-value=2.1e+02 Score=25.83 Aligned_cols=49 Identities=20% Similarity=0.149 Sum_probs=35.1
Q ss_pred chHHHHHHHHHh---cCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccC
Q 038758 254 VVWNSIISAFVR---SGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA 302 (354)
Q Consensus 254 ~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~ 302 (354)
..+..+++++.+ .++.+.|+..+..|.+.|..|....-..++.++-..|
T Consensus 228 ~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 228 DEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 344556666665 4789999999999999998888666555555554444
No 389
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=48.50 E-value=2.1e+02 Score=25.97 Aligned_cols=62 Identities=10% Similarity=0.156 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcc
Q 038758 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI 229 (354)
Q Consensus 165 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 229 (354)
..|+.-|.-.|+..+|.+.++++. .-+--....+.+++.+.-+.|+-.....+++...+.|.
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLg---mPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELG---MPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhC---CCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 456666777777777777666652 11222234456666666666665555555555555544
No 390
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=48.34 E-value=1.7e+02 Score=24.80 Aligned_cols=118 Identities=14% Similarity=0.121 Sum_probs=66.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHH-------HHHHHHhccCChhhHHHHHHHHHH----hccCCCceehh
Q 038758 36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCP-------KVYKACSELKDYRVGKDVYDYMIS----IKFEGNACVKR 104 (354)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-------~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~~~~ 104 (354)
+.+...+.+++++|...+.+....|+..+..+.+ .+...|...|+.....+......+ ..-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 3445667899999999999999999877665543 566777888877665555443332 22122333445
Q ss_pred hHHHHHHhc-CChhHHHHHHHhh----ccc------cchhhHHHHHHHhcCchhHHHHHh
Q 038758 105 PLLDLFIKC-GRMEITSGLFEEM----DQD------FLVNNSLIDFYAKCRYLKVSHCKF 153 (354)
Q Consensus 105 ~li~~~~~~-g~~~~a~~~~~~~----~~~------~~~~~~li~~~~~~~~~~~a~~~~ 153 (354)
+|+.-+-.. ..++....+.... ... ...-..++..+.+.|.+.+|....
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalI 148 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALI 148 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 555544333 2333333333332 111 111124566666666666666554
No 391
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=47.36 E-value=28 Score=25.41 Aligned_cols=32 Identities=13% Similarity=0.249 Sum_probs=25.5
Q ss_pred hCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHh
Q 038758 173 LGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208 (354)
Q Consensus 173 ~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~ 208 (354)
..|.-.+|..+|+.|. ..|-+|| .|+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML--~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKML--ERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHH--hCCCCCc--cHHHHHHHh
Confidence 4477789999999999 9999998 466776653
No 392
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=47.35 E-value=31 Score=21.55 Aligned_cols=49 Identities=6% Similarity=-0.076 Sum_probs=23.9
Q ss_pred cCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 62 RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 62 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|+...++.++...++..-.+.+...+....+.| ..+..+|-.-++.++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~La 53 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLA 53 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3444555555555555555555556665555555 233333433333333
No 393
>PF13934 ELYS: Nuclear pore complex assembly
Probab=47.22 E-value=1.5e+02 Score=24.05 Aligned_cols=100 Identities=11% Similarity=0.100 Sum_probs=60.3
Q ss_pred hHHHHHHHHH--hcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceeh--hhHH
Q 038758 32 NWTSMMGMYN--VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK--RPLL 107 (354)
Q Consensus 32 ~y~~li~~~~--~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~li 107 (354)
.|...++++- ..+++++|.+.+-+- .+.| ..-..++.++...|+.+.|..++... .|...+. ..+.
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~--~~~~~Il~~L~~~~~~~lAL~y~~~~-----~p~l~s~~~~~~~ 147 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLIP--WFPDKILQALLRRGDPKLALRYLRAV-----GPPLSSPEALTLY 147 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCc--ccHHHHHHHHHHCCChhHHHHHHHhc-----CCCCCCHHHHHHH
Confidence 6666677655 446777777776221 1221 22336888888899999999988764 3333332 2222
Q ss_pred HHHHhcCChhHHHHHHHhhccc--cchhhHHHHHHH
Q 038758 108 DLFIKCGRMEITSGLFEEMDQD--FLVNNSLIDFYA 141 (354)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~~~~~--~~~~~~li~~~~ 141 (354)
.....++.+.+|..+-+..... ...+..++..+.
T Consensus 148 ~~~La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 148 FVALANGLVTEAFSFQRSYPDELRRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHH
Confidence 3337778999998877766332 245555555555
No 394
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=46.32 E-value=1.2e+02 Score=25.75 Aligned_cols=109 Identities=11% Similarity=0.056 Sum_probs=56.5
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHH
Q 038758 71 VYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150 (354)
Q Consensus 71 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 150 (354)
++....+.++.....+.+..+... ..-...+..+...|++.+|.++..+...-...+..+--.-.-..++++-.
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~v------~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~~ 177 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKTV------QQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQETL 177 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHHH
Confidence 444444555555555555555432 22344566677888888888887777322221111100000001112222
Q ss_pred HHhccCC---------CCChhhhHHHHHHHHhCCChhHHHHHHH
Q 038758 151 CKFSKIK---------QKDLVSWNAMLAGYALGGFREEVTNLLD 185 (354)
Q Consensus 151 ~~~~~~~---------~~~~~~~~~li~~~~~~~~~~~a~~~~~ 185 (354)
...+.+. .-|+..|..++.||.-.|+...+.+-+.
T Consensus 178 ~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~ 221 (291)
T PF10475_consen 178 ELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQ 221 (291)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 2221111 2488899999999999998766654443
No 395
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=46.01 E-value=39 Score=24.02 Aligned_cols=46 Identities=9% Similarity=-0.003 Sum_probs=25.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCC
Q 038758 35 SMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD 80 (354)
Q Consensus 35 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 80 (354)
.++..+...+..-.|.++++.+.+.+...+..|.-.-|..+.+.|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 3455555555566666777777666655555554444455554443
No 396
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=45.09 E-value=46 Score=23.42 Aligned_cols=49 Identities=10% Similarity=0.111 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccC
Q 038758 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ 306 (354)
Q Consensus 258 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 306 (354)
.++..+...+..-.|.++++++.+.+..++..|.-..+..+...|-+..
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 3556666667777899999999988878888888888888888887654
No 397
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=44.84 E-value=67 Score=29.61 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=33.9
Q ss_pred cchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHh
Q 038758 18 LCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACS 76 (354)
Q Consensus 18 ~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 76 (354)
|..+.|.+-+.-...||.+|+ |-.++.-.++..|...|+-.| .+|++|+.-.-
T Consensus 608 e~~RlyssCfKN~iIYNaVIS-----gIheqmK~lmkl~PR~~iL~D-iHF~aLL~K~k 660 (782)
T PF07218_consen 608 EYIRLYSSCFKNMIIYNAVIS-----GIHEQMKNLMKLMPRKPILKD-IHFEALLNKEK 660 (782)
T ss_pred HHHHHHHHHhhhhHhHHHHHH-----HHHHHHHHHHHhCCCcchhHH-HHHHHHhhhcc
Confidence 445555544444447888876 556677788888888775444 44777776544
No 398
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=44.57 E-value=1.9e+02 Score=25.68 Aligned_cols=51 Identities=4% Similarity=0.020 Sum_probs=24.3
Q ss_pred hcCChhHHHHHHHHHHhCCCcCCcc--cHHHHHHHHhc--cCChhhHHHHHHHHHH
Q 038758 42 VLGYYEEIVNLFYLMIDKGVRPDHF--VCPKVYKACSE--LKDYRVGKDVYDYMIS 93 (354)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~--~~~~~~a~~~~~~m~~ 93 (354)
..+++..|.++|+.+... ++++.. .+..+..+|.. .-++++|.+.++...+
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 556666666666666554 333333 23333333332 2344555555554443
No 399
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=44.33 E-value=93 Score=26.42 Aligned_cols=110 Identities=12% Similarity=0.001 Sum_probs=59.5
Q ss_pred hHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCC--ChhhhHHHHHHHHhCCChhHHHH
Q 038758 105 PLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK--DLVSWNAMLAGYALGGFREEVTN 182 (354)
Q Consensus 105 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~ 182 (354)
.++....+........+.+..+ .....-...+..+...|++..|.++..+..+. +...|+.+=.. ..++++-..
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i-~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L---~~~L~e~~~ 178 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQI-KTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHL---SSQLQETLE 178 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHH---hHHHHHHHH
Confidence 3445555555555555555554 22233345667778899999999998776541 11111111111 112223223
Q ss_pred HHHHHHh-h--hcCCCCCcchHHHHHHHhhhhcCccccc
Q 038758 183 LLDEMEM-I--QTDMQPNTISLSGVLAACAQVKGVKLGK 218 (354)
Q Consensus 183 ~~~~m~~-~--~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 218 (354)
..+++.. . .--..-|...|..++.||.-.|+.+.+.
T Consensus 179 ~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 179 LIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHH
Confidence 3322210 0 1112467789999999999999765544
No 400
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=44.32 E-value=1.9e+02 Score=24.27 Aligned_cols=121 Identities=17% Similarity=0.132 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhC----C----CcCCc-----ccHH
Q 038758 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDK----G----VRPDH-----FVCP 69 (354)
Q Consensus 3 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~----~----~~p~~-----~~~~ 69 (354)
.|..++......-...++.....|-+. .||.-...+.+..+++.|..++++..+. + ..|+. .+..
T Consensus 11 ~A~~~~~K~~~~~~~~~~~~~~~La~~--~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~ 88 (278)
T PF08631_consen 11 LAEHMYSKAKDLLNSLDPDMAEELARV--CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILR 88 (278)
T ss_pred HHHHHHHHhhhHHhcCCcHHHHHHHHH--HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHH
Confidence 445555544443323333333344444 6888887777766888888877775443 1 12222 2345
Q ss_pred HHHHHHhccCChh---hHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758 70 KVYKACSELKDYR---VGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 70 ~ll~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
.+..++...+..+ +|.++++.+.+. ++-.+.++..-+..+.+.++.+.+.+.+.+|
T Consensus 89 ~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~m 147 (278)
T PF08631_consen 89 LLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRM 147 (278)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHH
Confidence 5666776666544 455666666433 2223445555666777778888888777776
No 401
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=43.82 E-value=2.4e+02 Score=25.15 Aligned_cols=41 Identities=12% Similarity=0.142 Sum_probs=27.6
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcC-cCCCHhhHHHH
Q 038758 254 VVWNSIISAFVRSGQVVDALDLLRDVIVAN-VKPNTVTIVSV 294 (354)
Q Consensus 254 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~l 294 (354)
..|+.++......+.+-.+.+.|+..-+.| ++-|+.-+...
T Consensus 213 kyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~v 254 (439)
T KOG1498|consen 213 KYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEV 254 (439)
T ss_pred HHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhh
Confidence 457888888888888888888888887654 33333334333
No 402
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=43.42 E-value=1.9e+02 Score=23.86 Aligned_cols=48 Identities=17% Similarity=0.177 Sum_probs=37.9
Q ss_pred HHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcc
Q 038758 149 SHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI 199 (354)
Q Consensus 149 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~ 199 (354)
++.+|+-..+|.+.....++..|. .+++++|.+++.++. +.|+.|...
T Consensus 227 ~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw--~lgysp~Di 274 (333)
T KOG0991|consen 227 QENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELW--KLGYSPEDI 274 (333)
T ss_pred hhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHH--HcCCCHHHH
Confidence 455666666788888888887765 568999999999998 999998643
No 403
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=43.18 E-value=5.4e+02 Score=29.15 Aligned_cols=55 Identities=4% Similarity=-0.077 Sum_probs=34.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhhhcCCC--CCcchHHHHHHHhhhhcCccccchhhh
Q 038758 166 AMLAGYALGGFREEVTNLLDEMEMIQTDMQ--PNTISLSGVLAACAQVKGVKLGKAIHG 222 (354)
Q Consensus 166 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~ 222 (354)
++..+-.+.+.+..|...++.-. ....+ -...-|-.+...|+..++++.+.-+..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~--~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~ 1444 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHR--STEKEKETEEALYFLLQNLYGSIHDPDGVEGVSA 1444 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhc--cccchhHHHHHHHHHHHHHHHhcCCcchhhhHHH
Confidence 45556677888888888888732 11111 112334444448888888888777654
No 404
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=43.16 E-value=1.2e+02 Score=27.20 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=12.7
Q ss_pred HHHHHHhcCChhHHHHHHHhh
Q 038758 106 LLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 106 li~~~~~~g~~~~a~~~~~~~ 126 (354)
|++.++-.||+..|.++++.+
T Consensus 128 LlRvh~LLGDY~~Alk~l~~i 148 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENI 148 (404)
T ss_pred HHHHHHhccCHHHHHHHhhcc
Confidence 455555666666666666655
No 405
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=42.68 E-value=2.2e+02 Score=24.44 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=17.1
Q ss_pred cchHHHHHHHHHhcCCHHHHH
Q 038758 253 VVVWNSIISAFVRSGQVVDAL 273 (354)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~a~ 273 (354)
.-+|.-|+.+++..|+.+-.+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 346888999999999987654
No 406
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=41.87 E-value=1.7e+02 Score=23.30 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=13.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMID 58 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~ 58 (354)
.-+.+++.+...|+++.|.++|.-+..
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR 69 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIR 69 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 444555555555555555555555443
No 407
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=41.37 E-value=28 Score=21.64 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=17.8
Q ss_pred cCChhHHHHHHHHHHhCC-CcCCc
Q 038758 43 LGYYEEIVNLFYLMIDKG-VRPDH 65 (354)
Q Consensus 43 ~~~~~~a~~~~~~m~~~~-~~p~~ 65 (354)
.=+++.|...|.+++..| ++|+.
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhh
Confidence 348899999999999876 55554
No 408
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=41.09 E-value=32 Score=24.04 Aligned_cols=60 Identities=15% Similarity=0.044 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhcc--CChhhHHHHHHHHHHhc
Q 038758 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL--KDYRVGKDVYDYMISIK 95 (354)
Q Consensus 34 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~m~~~~ 95 (354)
..++.-|...|+.++|...++++.... --......++..+... ...+....++..+.+.+
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~ 67 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRK 67 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcC
Confidence 456677888899999999998864321 1111223333333333 23344556666666555
No 409
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=40.98 E-value=2e+02 Score=23.42 Aligned_cols=30 Identities=13% Similarity=0.217 Sum_probs=24.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038758 254 VVWNSIISAFVRSGQVVDALDLLRDVIVAN 283 (354)
Q Consensus 254 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 283 (354)
.||--+-.-+...|+.++|..+|+-....+
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 567777888889999999999998877554
No 410
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=40.92 E-value=1.7e+02 Score=25.14 Aligned_cols=73 Identities=14% Similarity=0.117 Sum_probs=58.3
Q ss_pred HHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHh----------cCChhHH
Q 038758 50 VNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIK----------CGRMEIT 119 (354)
Q Consensus 50 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----------~g~~~~a 119 (354)
.++++.|.+.++.|.-..|..+.-.+.+.=.+..+..+++.+..- ..-|..|+..||. .||+..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 578889999999999999988888888888999999999988742 2227777776664 4888888
Q ss_pred HHHHHhhc
Q 038758 120 SGLFEEMD 127 (354)
Q Consensus 120 ~~~~~~~~ 127 (354)
.++++.-+
T Consensus 338 mkLLQ~yp 345 (370)
T KOG4567|consen 338 MKLLQNYP 345 (370)
T ss_pred HHHHhcCC
Confidence 88887753
No 411
>PHA02875 ankyrin repeat protein; Provisional
Probab=40.84 E-value=2.7e+02 Score=24.91 Aligned_cols=16 Identities=13% Similarity=0.133 Sum_probs=11.1
Q ss_pred HHHHHHHHhccccchh
Q 038758 6 QVHAHLIVCGVELCAF 21 (354)
Q Consensus 6 ~~~~~~~~~g~~~~~~ 21 (354)
.+.+.+++.|..|+..
T Consensus 16 ~iv~~Ll~~g~~~n~~ 31 (413)
T PHA02875 16 DIARRLLDIGINPNFE 31 (413)
T ss_pred HHHHHHHHCCCCCCcc
Confidence 4567777888777654
No 412
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=40.28 E-value=65 Score=23.30 Aligned_cols=45 Identities=9% Similarity=0.254 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhc
Q 038758 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVL 337 (354)
Q Consensus 270 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 337 (354)
++..++|..|...|+--....| |......+-..|++.+|.++|+.
T Consensus 80 ~dp~~if~~L~~~~IG~~~Alf-----------------------Ye~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALF-----------------------YEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHH-----------------------HHHHHHHHHHcCCHHHHHHHHHc
Confidence 4578899999988876555543 88888888999999999999874
No 413
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=40.23 E-value=37 Score=24.13 Aligned_cols=50 Identities=10% Similarity=0.086 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccC
Q 038758 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ 306 (354)
Q Consensus 257 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 306 (354)
..++..+...+..-.|.++++.+.+.|...+..|.-..|..+...|-+..
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~ 60 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEE
Confidence 35667777777788899999999998888888888888888887776543
No 414
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=40.00 E-value=1.2e+02 Score=24.18 Aligned_cols=79 Identities=15% Similarity=0.095 Sum_probs=33.5
Q ss_pred HHhcCChhHHHHHHHhh---------ccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHH---HHHHHhCCCh
Q 038758 110 FIKCGRMEITSGLFEEM---------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAM---LAGYALGGFR 177 (354)
Q Consensus 110 ~~~~g~~~~a~~~~~~~---------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---i~~~~~~~~~ 177 (354)
+.+.|++++|..-|... +.....|..-..++.+.+.++.|+.--.+..+.++.--.+| ..+|-+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 34556666665555443 11122333333344444555544444433333222111112 2234445555
Q ss_pred hHHHHHHHHHH
Q 038758 178 EEVTNLLDEME 188 (354)
Q Consensus 178 ~~a~~~~~~m~ 188 (354)
+.|++=|+.+.
T Consensus 185 eealeDyKki~ 195 (271)
T KOG4234|consen 185 EEALEDYKKIL 195 (271)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 415
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=39.89 E-value=2e+02 Score=23.31 Aligned_cols=96 Identities=8% Similarity=-0.038 Sum_probs=56.6
Q ss_pred CcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCC---Ccee--hhhHHHHHHhcCChhHHHHHHHhhccccc----
Q 038758 61 VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG---NACV--KRPLLDLFIKCGRMEITSGLFEEMDQDFL---- 131 (354)
Q Consensus 61 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~---- 131 (354)
+.+....+|.|+--|.....+.+|...|. ...|++| +..+ -..-|......|+++.|.+...++.|...
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa--~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFA--KESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhc--cccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 45666667777666666656666666654 3445555 2222 23456677888888888888888844322
Q ss_pred -hhhHHHH----HHHhcCchhHHHHHhccCCC
Q 038758 132 -VNNSLID----FYAKCRYLKVSHCKFSKIKQ 158 (354)
Q Consensus 132 -~~~~li~----~~~~~~~~~~a~~~~~~~~~ 158 (354)
.+-.|.. =..+.|..++|.++++.-..
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 2222211 23566778888888765443
No 416
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=39.52 E-value=1.2e+02 Score=27.18 Aligned_cols=66 Identities=8% Similarity=0.144 Sum_probs=40.1
Q ss_pred HHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038758 202 SGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280 (354)
Q Consensus 202 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 280 (354)
..+++..+-.||+..|.++++.+.-... .+|.+.+.-.+.+|--+--+|.-.+++.+|.++|....
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~-------------~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKK-------------GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccc-------------hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666555543322110 13334334456667777778888899999999988764
No 417
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=39.15 E-value=1.1e+02 Score=20.48 Aligned_cols=55 Identities=11% Similarity=0.128 Sum_probs=32.9
Q ss_pred HHhcCChhHHHHHHHHHHhC----CCcCC--cccHH--HHHHHHhccCChhhHHHHHHHHHHh
Q 038758 40 YNVLGYYEEIVNLFYLMIDK----GVRPD--HFVCP--KVYKACSELKDYRVGKDVYDYMISI 94 (354)
Q Consensus 40 ~~~~~~~~~a~~~~~~m~~~----~~~p~--~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~ 94 (354)
..+.|++..|.+-+.+.-.. +..+. ...+. .+.......|+.++|.+.+++.++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45778888887766665443 22221 11122 2334455778888888888887754
No 418
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=39.05 E-value=63 Score=22.76 Aligned_cols=40 Identities=15% Similarity=0.099 Sum_probs=27.9
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHH
Q 038758 70 KVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLF 110 (354)
Q Consensus 70 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 110 (354)
++++.+.++...++|.++++.|.++| ..+...-+.|-..+
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L 105 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSIL 105 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 45666777888889999999999888 55554444444333
No 419
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=38.95 E-value=63 Score=20.72 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=31.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCc
Q 038758 264 VRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303 (354)
Q Consensus 264 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 303 (354)
...|+.+.+.+++++..+.|..|.......+..+..+.|+
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 4468999999999999988988888777777777666654
No 420
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=38.35 E-value=1.9e+02 Score=23.46 Aligned_cols=91 Identities=11% Similarity=0.026 Sum_probs=47.7
Q ss_pred CCCceehhhH-HHHHHhcCChhHHHHHHHhh---cc--ccchh--hHHHHHHHhcCchhHHHHHhccCCC----CChhhh
Q 038758 97 EGNACVKRPL-LDLFIKCGRMEITSGLFEEM---DQ--DFLVN--NSLIDFYAKCRYLKVSHCKFSKIKQ----KDLVSW 164 (354)
Q Consensus 97 ~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~---~~--~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~ 164 (354)
.+...-+|.| |+.+...|..+.|..+-.+. +| +...+ ..-|......|++++|++...++.. .|...+
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~ 102 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELF 102 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHH
Confidence 4444444444 44455555555444443333 21 12222 2356667888888888888877753 232222
Q ss_pred HHHH----HHHHhCCChhHHHHHHHHH
Q 038758 165 NAML----AGYALGGFREEVTNLLDEM 187 (354)
Q Consensus 165 ~~li----~~~~~~~~~~~a~~~~~~m 187 (354)
-.+. --..+.|..++|++..+.=
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 2221 1245667777777777644
No 421
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=35.69 E-value=1.8e+02 Score=27.86 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=48.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC--CcCCcccHHHHHHHHhccCChhh------HHHHHHHHHHhccCCCceehhhH
Q 038758 35 SMMGMYNVLGYYEEIVNLFYLMIDKG--VRPDHFVCPKVYKACSELKDYRV------GKDVYDYMISIKFEGNACVKRPL 106 (354)
Q Consensus 35 ~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~------a~~~~~~m~~~~~~~~~~~~~~l 106 (354)
+|+.+|..+|++.++.++++.+...+ -+.=...||..|+...+.|.++. +.+.++.. .+--|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 68899999999999999999987653 23334468888888888887763 22333222 234455566655
Q ss_pred HHH
Q 038758 107 LDL 109 (354)
Q Consensus 107 i~~ 109 (354)
+.+
T Consensus 110 ~~~ 112 (1117)
T COG5108 110 CQA 112 (1117)
T ss_pred HHh
Confidence 443
No 422
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=35.47 E-value=3e+02 Score=23.91 Aligned_cols=165 Identities=16% Similarity=0.158 Sum_probs=77.6
Q ss_pred HHhccCCCCChh-hhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcc
Q 038758 151 CKFSKIKQKDLV-SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI 229 (354)
Q Consensus 151 ~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 229 (354)
.+..+.+++|.. ++|.+++...... +++.+.+++...+ +---.|+..|-...++.+.
T Consensus 53 ~v~~k~~ekdle~vlnsi~sLi~~~~-~e~~e~~v~a~~e-kva~q~n~~~~~l~L~vLs-------------------- 110 (378)
T KOG2753|consen 53 DVLAKIPEKDLECVLNSIVSLIKNAP-PEKVEEMVKAICE-KVAKQPNDKTASLRLQVLS-------------------- 110 (378)
T ss_pred HHhhcCCcchHHHHHHHHHHHHHhCC-HHHhHHHHHHHHH-HHhcCccCCCcccHHHHHH--------------------
Confidence 344455556654 4555555544444 8887777776652 2333455444333333322
Q ss_pred ccccccchhHHHHHHhcccCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHH--cCcCCCHhhHHHHHHHhhccCcc
Q 038758 230 HLSTACGFVICSCSVFNQLSTRD---VVVWNSIISAFVRSGQVVDALDLLRDVIV--ANVKPNTVTIVSVLPACLKLAAL 304 (354)
Q Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~t~~~li~~~~~~~~~ 304 (354)
.+|+.+..|+ ...|..++....+.+-++...-=++++.+ ....++..--..+..+..+.=.-
T Consensus 111 -------------nLfn~~d~~~~aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~ 177 (378)
T KOG2753|consen 111 -------------NLFNGVDKPTPARYQVYMSLVTLAASCKLIEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKD 177 (378)
T ss_pred -------------HHHhccCCCchHHHHHHHHHHHHHhhcceeeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 2333333443 24566666666666554443332333222 12234443333333333332222
Q ss_pred cCccccchhHHHHHHHHHHhcC---ChhHHHHHhhcCC-CCCcccHHHhh
Q 038758 305 PQGLGTGSFVWNALIDMYGRCG---AIQKSRKIFVLMP-HKNLVSWNVMI 350 (354)
Q Consensus 305 ~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~-~~~~~~~~~li 350 (354)
.+...-+...+..++..|.... --++|.+...+.. +|+...+..|+
T Consensus 178 ~k~~~~s~kvmt~lLgtyt~dnas~AredA~rcV~~av~dP~~F~fD~Ll 227 (378)
T KOG2753|consen 178 NKSVDESSKVMTELLGTYTEDNASEAREDAMRCVVEAVKDPKIFLFDHLL 227 (378)
T ss_pred cchhhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHcCCceeccchhc
Confidence 2223445566667777765443 2234555544443 37766665443
No 423
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=35.32 E-value=1.7e+02 Score=21.10 Aligned_cols=44 Identities=9% Similarity=0.245 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHhccCCC-ceehhhHHHHHHhcCChhHHHHHHHh
Q 038758 82 RVGKDVYDYMISIKFEGN-ACVKRPLLDLFIKCGRMEITSGLFEE 125 (354)
Q Consensus 82 ~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 125 (354)
..+.++|..|...|+.-. +..|......+...|++++|.++|+.
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 388899999998887654 44677888888888999999888764
No 424
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=35.05 E-value=3.9e+02 Score=25.20 Aligned_cols=176 Identities=11% Similarity=0.087 Sum_probs=110.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
+|+.-+..-.+.|+++.+.-+|++..-- +..=...|-.-+.-....|+.+.+..++..-.+.- .|+......+=..+.
T Consensus 299 nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 299 NWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIH-VKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-CCCCcHHHHHHHHHH
Confidence 8899999999999999999999887632 11122234444444455589998888887766654 444444444444455
Q ss_pred hc-CChhHHHHHHHhhccccch----hhHHHHHHHhcCchhHHH---HHhccCCC--CChhhhHHHHHH-----HHhCCC
Q 038758 112 KC-GRMEITSGLFEEMDQDFLV----NNSLIDFYAKCRYLKVSH---CKFSKIKQ--KDLVSWNAMLAG-----YALGGF 176 (354)
Q Consensus 112 ~~-g~~~~a~~~~~~~~~~~~~----~~~li~~~~~~~~~~~a~---~~~~~~~~--~~~~~~~~li~~-----~~~~~~ 176 (354)
.. |+++.|..+++.+..+-.. -..-+....+.|+.+.+. .++..... .+....+.+.-- +.-.++
T Consensus 377 e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d 456 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRED 456 (577)
T ss_pred HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcC
Confidence 44 7999999999998433311 112234556677777777 33333221 222222223222 233578
Q ss_pred hhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhc
Q 038758 177 REEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212 (354)
Q Consensus 177 ~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~ 212 (354)
.+.|..++.++ ..-++++...|..++.-+...+
T Consensus 457 ~~~a~~~l~~~---~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 457 ADLARIILLEA---NDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHh---hhcCCccHHHHHHHHHHHHhCC
Confidence 89999999999 5567777777888877665444
No 425
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=34.92 E-value=15 Score=19.12 Aligned_cols=22 Identities=14% Similarity=0.371 Sum_probs=16.8
Q ss_pred ChhHHHHHhhcCCC--CCcccHHH
Q 038758 327 AIQKSRKIFVLMPH--KNLVSWNV 348 (354)
Q Consensus 327 ~~~~A~~~~~~m~~--~~~~~~~~ 348 (354)
.++.|..+|++... |++.+|-.
T Consensus 2 E~dRAR~IyeR~v~~hp~~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHHHhCCCchHHHH
Confidence 47889999998776 88777743
No 426
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=34.30 E-value=4.1e+02 Score=25.12 Aligned_cols=85 Identities=11% Similarity=0.061 Sum_probs=56.3
Q ss_pred HhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHh-ccCChhhHHHHHHHHHHh-ccC-CCceehhhHHHHHHhcCChh
Q 038758 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACS-ELKDYRVGKDVYDYMISI-KFE-GNACVKRPLLDLFIKCGRME 117 (354)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~m~~~-~~~-~~~~~~~~li~~~~~~g~~~ 117 (354)
.+.|..+.+..+|++-.+ |++.....|...+..+. ..|+.+...+.|+..+.. |.. -....|...|.--..+.+..
T Consensus 90 ~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k 168 (577)
T KOG1258|consen 90 YKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWK 168 (577)
T ss_pred HHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHH
Confidence 355788888888888776 35566666666665544 446777777777777654 332 23345666666666777777
Q ss_pred HHHHHHHhh
Q 038758 118 ITSGLFEEM 126 (354)
Q Consensus 118 ~a~~~~~~~ 126 (354)
....+++++
T Consensus 169 ~v~~iyeRi 177 (577)
T KOG1258|consen 169 RVANIYERI 177 (577)
T ss_pred HHHHHHHHH
Confidence 777777776
No 427
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=34.13 E-value=22 Score=20.93 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=16.8
Q ss_pred cCChhHHHHHHHHHHhCC-CcCCcc
Q 038758 43 LGYYEEIVNLFYLMIDKG-VRPDHF 66 (354)
Q Consensus 43 ~~~~~~a~~~~~~m~~~~-~~p~~~ 66 (354)
.=+++.|...|..+...| ++|+.+
T Consensus 26 ~Wd~~~A~~~F~~l~~~~~IP~eAF 50 (51)
T PF03943_consen 26 NWDYERALQNFEELKAQGKIPPEAF 50 (51)
T ss_dssp TT-CCHHHHHHHHCCCTT-S-CCCC
T ss_pred CCCHHHHHHHHHHHHHcCCCChHhc
Confidence 347889999999998876 555543
No 428
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=33.94 E-value=2.5e+02 Score=26.62 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=23.1
Q ss_pred HHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchh
Q 038758 108 DLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147 (354)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~ 147 (354)
-..+-.|++..+.+....+..+.-+-..+.+.+...|-++
T Consensus 305 ~~~i~~~d~~~vL~~~~~~~~~~w~aahladLl~~~g~L~ 344 (566)
T PF07575_consen 305 LLAIFEGDIESVLKEISSLFDDWWFAAHLADLLEHKGLLE 344 (566)
T ss_dssp HHHHHTS--GGGHHHHHHH--HHHHHHHHHHHHHHTTSS-
T ss_pred HHHHHccCHHHHHHHHHHHccchhHHHHHHHHHHhcCccc
Confidence 3444578888888888777555555556666666666655
No 429
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=33.84 E-value=3.1e+02 Score=23.66 Aligned_cols=79 Identities=9% Similarity=0.064 Sum_probs=51.0
Q ss_pred ChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHh---cCChhHHHH
Q 038758 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIK---CGRMEITSG 121 (354)
Q Consensus 45 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~ 121 (354)
-.+.-+.++++..+.+ +-+.......|..+.+.-+.+...+-++.+.... +-+...|...+..... .-.++....
T Consensus 46 ~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 46 LAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 3556677888877763 2444456667777777778888888888888763 3456667666665544 234556666
Q ss_pred HHHh
Q 038758 122 LFEE 125 (354)
Q Consensus 122 ~~~~ 125 (354)
+|.+
T Consensus 124 ~y~~ 127 (321)
T PF08424_consen 124 VYEK 127 (321)
T ss_pred HHHH
Confidence 5554
No 430
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=33.65 E-value=59 Score=15.87 Aligned_cols=14 Identities=14% Similarity=0.482 Sum_probs=7.2
Q ss_pred ChhhHHHHHHHHHH
Q 038758 80 DYRVGKDVYDYMIS 93 (354)
Q Consensus 80 ~~~~a~~~~~~m~~ 93 (354)
+.+.+..+|+.+.+
T Consensus 2 ~~~~~r~i~e~~l~ 15 (33)
T smart00386 2 DIERARKIYERALE 15 (33)
T ss_pred cHHHHHHHHHHHHH
Confidence 34455555555554
No 431
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=33.19 E-value=1.5e+02 Score=19.69 Aligned_cols=37 Identities=8% Similarity=0.080 Sum_probs=22.7
Q ss_pred CchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHH
Q 038758 144 RYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEV 180 (354)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 180 (354)
.+.+++.++++.++..+...|..+.+++-..|...-|
T Consensus 44 tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 44 SRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3455566666666666667777777776666654433
No 432
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=33.02 E-value=2.6e+02 Score=27.25 Aligned_cols=100 Identities=7% Similarity=-0.012 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHH
Q 038758 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWN 257 (354)
Q Consensus 178 ~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 257 (354)
++..+.+....+ ..|+..+......+++.. .|+...+..+++++...+.. .=..+....++. ..+.....
T Consensus 181 eeI~~~L~~Il~-kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g----~It~e~V~~lLG---~~d~~~If 250 (709)
T PRK08691 181 QQVADHLAHVLD-SEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSG----KVAENDVRQMIG---AVDKQYLY 250 (709)
T ss_pred HHHHHHHHHHHH-HcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCC----CcCHHHHHHHHc---ccCHHHHH
Confidence 455555555442 567777777777766654 47888888888776654310 001222222222 23334455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCcCCCH
Q 038758 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNT 288 (354)
Q Consensus 258 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 288 (354)
.++.++.+ ++...++.++++|.+.|+.+..
T Consensus 251 ~LldAL~~-~d~~~al~~l~~L~~~G~d~~~ 280 (709)
T PRK08691 251 ELLTGIIN-QDGAALLAKAQEMAACAVGFDN 280 (709)
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHhCCCHHH
Confidence 56666665 8899999999999999886654
No 433
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=32.78 E-value=83 Score=20.87 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=17.7
Q ss_pred hHHHHHHhcccCCCCcchHHHHHHHHHhcCCHH
Q 038758 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270 (354)
Q Consensus 238 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 270 (354)
.+.+..+++.++.....+|..+..++-..|...
T Consensus 46 ~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 46 RDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 344444444444455566666666666655443
No 434
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=32.72 E-value=85 Score=25.86 Aligned_cols=53 Identities=9% Similarity=-0.113 Sum_probs=29.8
Q ss_pred HHHHHHHhcCchhHHHHHhccCCC---------CChhhhHHHHHHHHhCCChhHHHHHHHHH
Q 038758 135 SLIDFYAKCRYLKVSHCKFSKIKQ---------KDLVSWNAMLAGYALGGFREEVTNLLDEM 187 (354)
Q Consensus 135 ~li~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m 187 (354)
.+..-|.+.|++++|.++|+.+.. ....+...+..++.+.|+.+..+.+--++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344555555555555555555421 22334445666777778877776665444
No 435
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=32.70 E-value=2.8e+02 Score=22.73 Aligned_cols=21 Identities=14% Similarity=0.275 Sum_probs=12.3
Q ss_pred hhhhHhhhhhhHHHHHHHHHhcC
Q 038758 22 LGSQLLEVFCNWTSMMGMYNVLG 44 (354)
Q Consensus 22 ~~~~li~~~~~y~~li~~~~~~~ 44 (354)
.|+.++.. +.++|+.+|++-+
T Consensus 125 lw~~~i~~--~~~~Lveg~s~vk 145 (234)
T PF10474_consen 125 LWDRLIFF--AFETLVEGYSRVK 145 (234)
T ss_pred HHHHHHHH--HHHHHHHHHHhcc
Confidence 34444433 6777777777653
No 436
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=32.64 E-value=2.7e+02 Score=25.98 Aligned_cols=104 Identities=12% Similarity=0.088 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHH
Q 038758 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWN 257 (354)
Q Consensus 178 ~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 257 (354)
++..+.++...+ ..|+..+......+... ..|+...+..+++++...+.... ..=..+....++ ...+....-
T Consensus 190 ~el~~~L~~i~~-~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~-~~It~~~V~~ll---g~~~~~~if 262 (507)
T PRK06645 190 EEIFKLLEYITK-QENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSD-NIISPQVINQML---GLVDSSVII 262 (507)
T ss_pred HHHHHHHHHHHH-HcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCC-CCcCHHHHHHHH---CCCCHHHHH
Confidence 344444444432 45666665555555543 34667777777766644321000 000111111222 233333444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHh
Q 038758 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289 (354)
Q Consensus 258 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 289 (354)
.++.+.. .|+..+|+.+++++...|..|...
T Consensus 263 ~L~~ai~-~~d~~~Al~~l~~L~~~g~~~~~~ 293 (507)
T PRK06645 263 EFVEYII-HRETEKAINLINKLYGSSVNLEIF 293 (507)
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHHcCCCHHHH
Confidence 4555554 499999999999999999887653
No 437
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.12 E-value=90 Score=20.48 Aligned_cols=30 Identities=10% Similarity=0.053 Sum_probs=21.5
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhccCCCc
Q 038758 70 KVYKACSELKDYRVGKDVYDYMISIKFEGNA 100 (354)
Q Consensus 70 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 100 (354)
++++.+.++.-.++|.++++.|.++| ..+.
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG-Ei~~ 65 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG-EITP 65 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCH
Confidence 45666677777788888888888877 4443
No 438
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=31.96 E-value=2.5e+02 Score=21.97 Aligned_cols=118 Identities=13% Similarity=0.020 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHHhCCCcCCccc---HHHHHHHHhccCChhhHHHHHHHHHHh-----ccCCCc-eehhhHHHHHHhc---
Q 038758 46 YEEIVNLFYLMIDKGVRPDHFV---CPKVYKACSELKDYRVGKDVYDYMISI-----KFEGNA-CVKRPLLDLFIKC--- 113 (354)
Q Consensus 46 ~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~-~~~~~li~~~~~~--- 113 (354)
++.|.+..+.-...+ +.|... |...+.-+.+..+..++.+++++.... .+.|+. .++..+..+|...
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 445555555543332 233333 444444455555555555555555432 245553 4555566655544
Q ss_pred -CChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCC--CCChhhhHHHHHHHHhCCChhHHHHHHHHHHhh
Q 038758 114 -GRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK--QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190 (354)
Q Consensus 114 -g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 190 (354)
.+..+|... +++|...|++.. +|+..+|+.-+... ++|-++..++.
T Consensus 86 ~~d~~~A~~~-----------------------F~kA~~~FqkAv~~~P~ne~Y~ksLe~~------~kap~lh~e~~-- 134 (186)
T PF06552_consen 86 TPDTAEAEEY-----------------------FEKATEYFQKAVDEDPNNELYRKSLEMA------AKAPELHMEIH-- 134 (186)
T ss_dssp ---HHHHHHH-----------------------HHHHHHHHHHHHHH-TT-HHHHHHHHHH------HTHHHHHHHHH--
T ss_pred cCChHHHHHH-----------------------HHHHHHHHHHHHhcCCCcHHHHHHHHHH------HhhHHHHHHHH--
Confidence 344455554 445677777654 58889999888776 35777777776
Q ss_pred hcCCC
Q 038758 191 QTDMQ 195 (354)
Q Consensus 191 ~~~~~ 195 (354)
+.+..
T Consensus 135 ~~~~~ 139 (186)
T PF06552_consen 135 KQGLG 139 (186)
T ss_dssp HSSS-
T ss_pred HHHhh
Confidence 55443
No 439
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=31.83 E-value=3.6e+02 Score=23.80 Aligned_cols=119 Identities=8% Similarity=0.024 Sum_probs=65.4
Q ss_pred hHHHHHHHHHhccccchhhhhhHhhhhh----hHHHHHHHHHhcCChhHHHHHHHHHHhC-------CC-----------
Q 038758 4 GIQVHAHLIVCGVELCAFLGSQLLEVFC----NWTSMMGMYNVLGYYEEIVNLFYLMIDK-------GV----------- 61 (354)
Q Consensus 4 a~~~~~~~~~~g~~~~~~~~~~li~~~~----~y~~li~~~~~~~~~~~a~~~~~~m~~~-------~~----------- 61 (354)
+++.+...+..+ |+...-.+++.+- +.-.+-..+...|+.+.|.+++++..-. ..
T Consensus 13 ~q~~F~~~v~~~---Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~ 89 (360)
T PF04910_consen 13 AQEQFYAAVQSH---DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGN 89 (360)
T ss_pred HHHHHHHHHHcc---CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc
Confidence 344444444433 4444344554443 5556667778888888887777775211 11
Q ss_pred -------cCCcccHHHH---HHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH-hcCChhHHHHHHHh
Q 038758 62 -------RPDHFVCPKV---YKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI-KCGRMEITSGLFEE 125 (354)
Q Consensus 62 -------~p~~~~~~~l---l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~ 125 (354)
.-|...|-++ |..+.+.|-+..|.++-+.+...+..-|+.....+|+.|+ ++++++-..++.+.
T Consensus 90 ~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~ 164 (360)
T PF04910_consen 90 CRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSES 164 (360)
T ss_pred cccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHh
Confidence 0122233333 3455566777777777777766653335555555566554 44566656555554
No 440
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=31.67 E-value=1.2e+02 Score=18.05 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=25.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHH
Q 038758 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV 294 (354)
Q Consensus 259 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 294 (354)
+--++.+.|++++|.+..+.+.+. .|+..-...|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHH
Confidence 446789999999999999999865 7877654444
No 441
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.62 E-value=3.4e+02 Score=25.38 Aligned_cols=99 Identities=8% Similarity=0.041 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHH
Q 038758 179 EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNS 258 (354)
Q Consensus 179 ~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 258 (354)
+..+.+....+ ..|+..+......++... .|+...+..++++....|. ..-..+....++ ...+......
T Consensus 182 ~i~~~l~~il~-~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~----~~It~~~V~~~l---g~~~~~~i~~ 251 (509)
T PRK14958 182 QIAAHCQHLLK-EENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGN----GKVLIADVKTML---GTIEPLLLFD 251 (509)
T ss_pred HHHHHHHHHHH-HcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCC----CCcCHHHHHHHH---CCCCHHHHHH
Confidence 33444444432 567776666666665543 4778888888776654431 000111112222 2344445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCcCCCH
Q 038758 259 IISAFVRSGQVVDALDLLRDVIVANVKPNT 288 (354)
Q Consensus 259 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 288 (354)
++.+... |+.++++.++++|.+.|..|..
T Consensus 252 ll~al~~-~d~~~~l~~~~~l~~~g~~~~~ 280 (509)
T PRK14958 252 ILEALAA-KAGDRLLGCVTRLVEQGVDFSN 280 (509)
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHcCCCHHH
Confidence 6666554 8899999999999999988753
No 442
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=31.47 E-value=1.7e+02 Score=28.10 Aligned_cols=75 Identities=15% Similarity=0.026 Sum_probs=44.7
Q ss_pred HHHHHHHhcCchhHHHHHhccCCC------CChhhhHHHHHHHHhCCChhH--HHHHHHHHHhhhcCCCCCcchHHHHHH
Q 038758 135 SLIDFYAKCRYLKVSHCKFSKIKQ------KDLVSWNAMLAGYALGGFREE--VTNLLDEMEMIQTDMQPNTISLSGVLA 206 (354)
Q Consensus 135 ~li~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~--a~~~~~~m~~~~~~~~p~~~t~~~ll~ 206 (354)
+|+.+|...|++..+.++++.+.. .=...||.-|+.+.+.|.++- ...-..+..+ ...+.-|..||..++.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq-~a~ln~d~~t~all~~ 111 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQ-QARLNGDSLTYALLCQ 111 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HhhcCCcchHHHHHHH
Confidence 677888888888888887776643 123457777777777776632 1111111111 3346667777777766
Q ss_pred Hhhh
Q 038758 207 ACAQ 210 (354)
Q Consensus 207 ~~~~ 210 (354)
+-..
T Consensus 112 ~sln 115 (1117)
T COG5108 112 ASLN 115 (1117)
T ss_pred hhcC
Confidence 5443
No 443
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=31.26 E-value=3e+02 Score=25.72 Aligned_cols=113 Identities=9% Similarity=0.034 Sum_probs=60.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHH---HHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKV---YKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLD 108 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l---l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 108 (354)
.-..|+.-|.+.+++++|..++..|.=.- -....|..| ...+.+..--++.+..++.+...=..|....-.....
T Consensus 410 ~~~eL~~~yl~~~qi~eAi~lL~smnW~~--~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ 487 (545)
T PF11768_consen 410 GLVELISQYLRCDQIEEAINLLLSMNWNT--MGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVL 487 (545)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCCccc--cHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHH
Confidence 44568889999999999999999885321 122334333 3334444434444555555554333344333333333
Q ss_pred HHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCCCh
Q 038758 109 LFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL 161 (354)
Q Consensus 109 ~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 161 (354)
-|.. -=.+-|.++|. .+.+.+++++|..+--++..+|.
T Consensus 488 ey~d-~V~~~aRRfFh--------------hLLR~~rfekAFlLAvdi~~~DL 525 (545)
T PF11768_consen 488 EYRD-PVSDLARRFFH--------------HLLRYQRFEKAFLLAVDIGDRDL 525 (545)
T ss_pred HHHH-HHHHHHHHHHH--------------HHHHhhHHHHHHHHHHhccchHH
Confidence 3332 11122334433 35667777777777666655543
No 444
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=31.14 E-value=1.5e+02 Score=19.20 Aligned_cols=73 Identities=16% Similarity=0.110 Sum_probs=33.4
Q ss_pred HHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCce--ehhhHHHHHHhcCChh
Q 038758 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC--VKRPLLDLFIKCGRME 117 (354)
Q Consensus 40 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~ 117 (354)
.++.|+++-...+++ .+...+. ..+ .+...+..|+. ++++.+.+.|..++.. .-.+.+...+..|..+
T Consensus 4 A~~~~~~~~~~~ll~----~~~~~~~-~~~-~l~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 73 (89)
T PF12796_consen 4 AAQNGNLEILKFLLE----KGADINL-GNT-ALHYAAENGNL----EIVKLLLENGADINSQDKNGNTALHYAAENGNLE 73 (89)
T ss_dssp HHHTTTHHHHHHHHH----TTSTTTS-SSB-HHHHHHHTTTH----HHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHH
T ss_pred HHHcCCHHHHHHHHH----CcCCCCC-CCC-HHHHHHHcCCH----HHHHHHHHhcccccccCCCCCCHHHHHHHcCCHH
Confidence 345566554444443 4434443 112 33334455554 4555556666666554 1223333345566655
Q ss_pred HHHHH
Q 038758 118 ITSGL 122 (354)
Q Consensus 118 ~a~~~ 122 (354)
-+.-+
T Consensus 74 ~~~~L 78 (89)
T PF12796_consen 74 IVKLL 78 (89)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 445
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=30.78 E-value=70 Score=25.58 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=34.5
Q ss_pred HHHHHHHHHhccccchhhhhhHhhhhh-------hHHHHHHHHHhcCChhHHHHHH
Q 038758 5 IQVHAHLIVCGVELCAFLGSQLLEVFC-------NWTSMMGMYNVLGYYEEIVNLF 53 (354)
Q Consensus 5 ~~~~~~~~~~g~~~~~~~~~~li~~~~-------~y~~li~~~~~~~~~~~a~~~~ 53 (354)
.++.+.+.+.|+..++..++.|++-|+ .+...|.+|.+...+-++..-+
T Consensus 144 sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~lt~~Fr~~ 199 (221)
T KOG0037|consen 144 SELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQRLTEAFRRR 199 (221)
T ss_pred HHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHHHHHHHHHh
Confidence 467888999999999998777777776 5666666666655544444433
No 446
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=30.59 E-value=8.6e+02 Score=27.77 Aligned_cols=52 Identities=6% Similarity=0.095 Sum_probs=29.8
Q ss_pred HHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758 74 ACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 74 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
.....|+++.|...|+.+.+.+ ++....++-++......|.++.+.-..+-.
T Consensus 1458 ~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~ 1509 (2382)
T KOG0890|consen 1458 EHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGL 1509 (2382)
T ss_pred HHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcch
Confidence 3445566666666666666554 444555665555555556665555544444
No 447
>PHA03100 ankyrin repeat protein; Provisional
Probab=30.51 E-value=4.2e+02 Score=24.17 Aligned_cols=177 Identities=12% Similarity=0.086 Sum_probs=87.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCcCCccc--HHHHHHH-----HhccCChhhHHHHHHHHHHhccCCCce---ehhh
Q 038758 36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFV--CPKVYKA-----CSELKDYRVGKDVYDYMISIKFEGNAC---VKRP 105 (354)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~-----~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ 105 (354)
.+...++.|+.+ +++.+.+.|..|+... ....+.. .+..++. ++.+.+.+.|..++.. ..+.
T Consensus 38 ~L~~A~~~~~~~----ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~----~iv~~Ll~~ga~i~~~d~~g~tp 109 (480)
T PHA03100 38 PLYLAKEARNID----VVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVK----EIVKLLLEYGANVNAPDNNGITP 109 (480)
T ss_pred hhhhhhccCCHH----HHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchH----HHHHHHHHCCCCCCCCCCCCCch
Confidence 444556666654 4445556676665432 2233333 4444444 3455556667655432 3344
Q ss_pred HHHHHH-hcCChhHHHHHHHhh-c---cccchhhHHHHHHHhcC--chhHHHHHhccCCCC---ChhhhHHHHHHHHhCC
Q 038758 106 LLDLFI-KCGRMEITSGLFEEM-D---QDFLVNNSLIDFYAKCR--YLKVSHCKFSKIKQK---DLVSWNAMLAGYALGG 175 (354)
Q Consensus 106 li~~~~-~~g~~~~a~~~~~~~-~---~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~ 175 (354)
|..+.. ..|+.+-+..+++.- . .+... ...+...++.| +.+-+.-+++.-..+ +..-++ -+...+..|
T Consensus 110 L~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g-~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~t-pL~~A~~~~ 187 (480)
T PHA03100 110 LLYAISKKSNSYSIVEYLLDNGANVNIKNSDG-ENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYT-PLHIAVEKG 187 (480)
T ss_pred hhHHHhcccChHHHHHHHHHcCCCCCccCCCC-CcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCC-HHHHHHHhC
Confidence 443332 777777766666542 1 11222 34566666777 777777777665443 222233 344455666
Q ss_pred ChhHHHHHHHHHHhhhcCCCCCcch--------HHHHHHHhhhhcCccccchhhhHhhhhccc
Q 038758 176 FREEVTNLLDEMEMIQTDMQPNTIS--------LSGVLAACAQVKGVKLGKAIHGYVLRHHIH 230 (354)
Q Consensus 176 ~~~~a~~~~~~m~~~~~~~~p~~~t--------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 230 (354)
+.+-+ +.+. +.|..|+... +...+...+..|+ ...++.+.+.+.|.+
T Consensus 188 ~~~iv----~~Ll--~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~d 242 (480)
T PHA03100 188 NIDVI----KFLL--DNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVP 242 (480)
T ss_pred CHHHH----HHHH--HcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCC
Confidence 55433 3333 4555554321 1333444444444 123444455555543
No 448
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=30.34 E-value=3.2e+02 Score=24.49 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=28.1
Q ss_pred HHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHH
Q 038758 7 VHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYL 55 (354)
Q Consensus 7 ~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~ 55 (354)
+.+.|.+.|+.|+..+-+ +=-+++.++.-.+..++..+++..
T Consensus 101 v~kaL~e~gl~p~~i~Gt-------S~Gaivaa~~a~~~~~e~~~~l~~ 142 (391)
T cd07229 101 VVKALWLRGLLPRIITGT-------ATGALIAALVGVHTDEELLRFLDG 142 (391)
T ss_pred HHHHHHHcCCCCceEEEe-------cHHHHHHHHHHcCCHHHHHHHHhc
Confidence 567788899999875433 445666666666666666666653
No 449
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=30.32 E-value=1.9e+02 Score=20.08 Aligned_cols=60 Identities=13% Similarity=0.035 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccC--ChhhHHHHHHHHHHhc
Q 038758 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK--DYRVGKDVYDYMISIK 95 (354)
Q Consensus 34 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~ 95 (354)
..++.-|...+++++|..-+.++.... --......++..+...+ ..+....++..+.+.+
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~--~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPE--QHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCc--chHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 346677888899999999998876432 12222334444444432 3344556666666554
No 450
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=29.34 E-value=97 Score=19.82 Aligned_cols=40 Identities=25% Similarity=0.301 Sum_probs=32.1
Q ss_pred HhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcC
Q 038758 172 ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG 213 (354)
Q Consensus 172 ~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~ 213 (354)
...++.+.+.+++++.. ..|..|.......+..+..+.|+
T Consensus 12 l~~~d~~~~~~~~~~~l--~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEAL--AQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HHTT-CCHHHHHHHHHH--HCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHH
Confidence 45789999999999998 77899888877778877777664
No 451
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=29.25 E-value=2.3e+02 Score=22.42 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=14.6
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 038758 264 VRSGQVVDALDLLRDVIV 281 (354)
Q Consensus 264 ~~~g~~~~a~~~~~~m~~ 281 (354)
.+.|+++.|.+.++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 457899999998888864
No 452
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=28.91 E-value=3.7e+02 Score=22.92 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=12.0
Q ss_pred ceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758 100 ACVKRPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 100 ~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
......++.+++...+.+...++++..
T Consensus 201 ~~~k~~~l~aLa~~~d~~~~~~~l~~~ 227 (324)
T PF11838_consen 201 PEEKRRLLSALACSPDPELLKRLLDLL 227 (324)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCHHHHHHHHHHH
Confidence 334444555555555554444444444
No 453
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=28.55 E-value=98 Score=19.87 Aligned_cols=14 Identities=14% Similarity=0.038 Sum_probs=7.1
Q ss_pred CChhHHHHHHHHHH
Q 038758 175 GFREEVTNLLDEME 188 (354)
Q Consensus 175 ~~~~~a~~~~~~m~ 188 (354)
|....|++-|.+|.
T Consensus 59 G~L~~aL~ey~~~~ 72 (82)
T PF11123_consen 59 GELAAALEEYKKMV 72 (82)
T ss_pred HHHHHHHHHHHHHc
Confidence 33445555555554
No 454
>PRK10941 hypothetical protein; Provisional
Probab=28.31 E-value=3.6e+02 Score=22.67 Aligned_cols=61 Identities=8% Similarity=-0.036 Sum_probs=40.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcc-cHHHHHHHHhccCChhhHHHHHHHHHHh
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHF-VCPKVYKACSELKDYRVGKDVYDYMISI 94 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 94 (354)
..+.|-.+|.+.++++.|+.+.+.+... .|+.. -+.--.-.|.+.|....|..=++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4567777777778888888877777764 33332 3444444566777777777777776654
No 455
>PRK09857 putative transposase; Provisional
Probab=27.99 E-value=3.8e+02 Score=22.83 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=43.4
Q ss_pred HHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038758 201 LSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280 (354)
Q Consensus 201 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 280 (354)
+..++....+.++.+...++++.+.+.. .+......++..-+.+.|.-+++.++.++|.
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~---------------------~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml 267 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERS---------------------PKHKESLMTIAERLRQEGEQSKALHIAKIML 267 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhC---------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566766666777766677766665542 1222223344555666677778899999999
Q ss_pred HcCcCCCH
Q 038758 281 VANVKPNT 288 (354)
Q Consensus 281 ~~g~~p~~ 288 (354)
..|+.++.
T Consensus 268 ~~g~~~~~ 275 (292)
T PRK09857 268 ESGVPLAD 275 (292)
T ss_pred HcCCCHHH
Confidence 99987653
No 456
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.71 E-value=4.9e+02 Score=24.14 Aligned_cols=101 Identities=7% Similarity=-0.005 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHH
Q 038758 179 EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNS 258 (354)
Q Consensus 179 ~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 258 (354)
...+.++.... ..|+..+......+... ..|+...|..+++++...+.. .=..+...+++. -.+...+..
T Consensus 184 ~i~~~L~~i~~-~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i~~~~~----~it~~~V~~~lg---~~~~~~~~~ 253 (484)
T PRK14956 184 VLQDYSEKLCK-IENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAIVFTDS----KLTGVKIRKMIG---YHGIEFLTS 253 (484)
T ss_pred HHHHHHHHHHH-HcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHHHhCCC----CcCHHHHHHHhC---CCCHHHHHH
Confidence 34444444432 45666565555555433 346777777777665432210 001122222221 234445556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCcCCCHh
Q 038758 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTV 289 (354)
Q Consensus 259 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 289 (354)
++.+....+....|+.++.+|.+.|..|...
T Consensus 254 l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 254 FIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 6666665555679999999999999888654
No 457
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=27.55 E-value=3e+02 Score=22.12 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=16.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 038758 261 SAFVRSGQVVDALDLLRDVIVA 282 (354)
Q Consensus 261 ~~~~~~g~~~~a~~~~~~m~~~ 282 (354)
.+|.+...+++|++=|+++.+.
T Consensus 176 eayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHh
Confidence 3566777788888888887754
No 458
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=27.47 E-value=4.3e+02 Score=23.33 Aligned_cols=62 Identities=8% Similarity=0.059 Sum_probs=48.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHh-ccCChhhHHHHHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACS-ELKDYRVGKDVYDYMIS 93 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~m~~ 93 (354)
+.-.-|..+.+.|.+..|+++-+-+...+..-|.......|+.|+ +.++++-..++.+....
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 344457788999999999999999998775556777777777776 77888888888887655
No 459
>PRK14700 recombination factor protein RarA; Provisional
Probab=27.08 E-value=3.3e+02 Score=23.33 Aligned_cols=38 Identities=13% Similarity=-0.066 Sum_probs=21.3
Q ss_pred ccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcC
Q 038758 77 ELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG 114 (354)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 114 (354)
+..|.+.|.-++..|.+.|-.|....-..++.++-.-|
T Consensus 138 RGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIG 175 (300)
T PRK14700 138 RGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIG 175 (300)
T ss_pred hcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 33466666666666666665555555555555544444
No 460
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=27.02 E-value=2.1e+02 Score=19.53 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhc
Q 038758 46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIK 95 (354)
Q Consensus 46 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 95 (354)
.+...+++....+. .....|+..|+.++...|.-..|.++-+.+.+.|
T Consensus 47 ~eq~~qmL~~W~~~--~G~~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~ 94 (96)
T cd08315 47 REQLYQMLLTWVNK--TGRKASVNTLLDALEAIGLRLAKESIQDELISSG 94 (96)
T ss_pred HHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHcccccHHHHHHHHHHHcC
Confidence 55666666665554 2235567777777777777777777766666554
No 461
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=26.66 E-value=1.8e+02 Score=20.14 Aligned_cols=64 Identities=17% Similarity=0.239 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCCh
Q 038758 257 NSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAI 328 (354)
Q Consensus 257 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 328 (354)
..++..|...++.++|.+-+.++.-....+ .....++..+...++ .....+..++..+++.|..
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~--~vv~~~i~~~le~~~------~~~~~~~~Ll~~L~~~~~~ 69 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPEQHH--EVVKVLLTCALEEKR------TYREMYSVLLSRLCQANVI 69 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCcchH--HHHHHHHHHHHcCCc------cHHHHHHHHHHHHHHcCCc
Confidence 346777888899999999888875322211 223344444443321 1233456666666655543
No 462
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=26.54 E-value=3.8e+02 Score=23.63 Aligned_cols=43 Identities=14% Similarity=0.150 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758 83 VGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
+|.-+++...+.. +-|...--.+++.|...|-.+.|...|..+
T Consensus 201 ~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 201 QAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 4445555544443 445555556777777777777777777776
No 463
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=26.25 E-value=4.7e+02 Score=23.31 Aligned_cols=52 Identities=10% Similarity=0.082 Sum_probs=38.7
Q ss_pred HHhccCChhhHHHHHHHHHHhccCCCce--ehhhHHHHHH--hcCChhHHHHHHHhh
Q 038758 74 ACSELKDYRVGKDVYDYMISIKFEGNAC--VKRPLLDLFI--KCGRMEITSGLFEEM 126 (354)
Q Consensus 74 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~--~~g~~~~a~~~~~~~ 126 (354)
.+.+.+++..|.++++.+.+. ++++.. .+..+..+|. ..-++++|.+.++..
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~ 195 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKL 195 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 445888999999999999987 666555 3444555554 457888899988876
No 464
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=26.13 E-value=2.7e+02 Score=22.04 Aligned_cols=58 Identities=17% Similarity=0.220 Sum_probs=42.6
Q ss_pred CceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccC
Q 038758 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKI 156 (354)
Q Consensus 99 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 156 (354)
.+.+...++.-|...|+.+.++++.-.+.++.--.+.++..|-+.|-++.-.-++.+.
T Consensus 21 pp~v~k~lv~~y~~~~~~~~lE~lI~~LD~~~LDidq~i~lC~~~~LydalIYv~n~~ 78 (196)
T PF12816_consen 21 PPEVFKALVEHYASKGRLERLEQLILHLDPSSLDIDQVIKLCKKHGLYDALIYVWNRA 78 (196)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHhcCHHHHHHHHHHCCCCCeeeeeeecc
Confidence 4466778888888888888888888888777777777777777777766555555443
No 465
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=26.12 E-value=22 Score=23.22 Aligned_cols=16 Identities=25% Similarity=0.598 Sum_probs=3.8
Q ss_pred ChhhhHHHHHHHHhCC
Q 038758 160 DLVSWNAMLAGYALGG 175 (354)
Q Consensus 160 ~~~~~~~li~~~~~~~ 175 (354)
+..+|..+|++|++.|
T Consensus 23 ~~~vyRvFiNgYar~g 38 (88)
T PF11491_consen 23 NEAVYRVFINGYARNG 38 (88)
T ss_dssp TTTB------TTSS--
T ss_pred ccceeeeeecccccce
Confidence 3444555555555544
No 466
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=26.04 E-value=35 Score=20.48 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=25.0
Q ss_pred CChhHHHHHHHHHHhCCCcCCcccHHHHHHHHh
Q 038758 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACS 76 (354)
Q Consensus 44 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 76 (354)
|--++..++|+.|..+...|....|+-.+.-|.
T Consensus 6 gy~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~ 38 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSRNYDPKTRKWNFSLEDYS 38 (55)
T ss_pred cCCHHHHHHHHcCcccccCccceeeeeeHHHHH
Confidence 555678888999988888888888877766543
No 467
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=25.78 E-value=1.3e+02 Score=23.82 Aligned_cols=65 Identities=17% Similarity=0.243 Sum_probs=47.9
Q ss_pred CCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhc
Q 038758 157 KQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH 228 (354)
Q Consensus 157 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 228 (354)
+...+.....++..|...|+.+..+++.-.+. |+.--.+.+++.|-+.|-.+.-.-++.+....-
T Consensus 18 ~~lpp~v~k~lv~~y~~~~~~~~lE~lI~~LD-------~~~LDidq~i~lC~~~~LydalIYv~n~~l~DY 82 (196)
T PF12816_consen 18 KSLPPEVFKALVEHYASKGRLERLEQLILHLD-------PSSLDIDQVIKLCKKHGLYDALIYVWNRALNDY 82 (196)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCC-------HHhcCHHHHHHHHHHCCCCCeeeeeeeccccCC
Confidence 34667788899999999999888877776663 555567778888888887777777766554433
No 468
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=25.73 E-value=2e+02 Score=20.82 Aligned_cols=43 Identities=12% Similarity=0.153 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHH
Q 038758 3 LGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFY 54 (354)
Q Consensus 3 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~ 54 (354)
.+..++..|.+.|+-...+. -|..--..+-..|++.+|.++|+
T Consensus 81 dp~~if~~L~~~~IG~~~Al---------fYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLAL---------FYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHH---------HHHHHHHHHHHcCCHHHHHHHHH
Confidence 45667778887776655553 45555566678899999988875
No 469
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=25.54 E-value=1.4e+02 Score=24.66 Aligned_cols=48 Identities=10% Similarity=0.049 Sum_probs=29.2
Q ss_pred hHHHHHHhcCChhHHHHHHHhh----------ccccchhhHHHHHHHhcCchhHHHHH
Q 038758 105 PLLDLFIKCGRMEITSGLFEEM----------DQDFLVNNSLIDFYAKCRYLKVSHCK 152 (354)
Q Consensus 105 ~li~~~~~~g~~~~a~~~~~~~----------~~~~~~~~~li~~~~~~~~~~~a~~~ 152 (354)
.+..-|.+.|++++|.++|+.+ .....+...+..++.+.|+.+....+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4556667777777777777776 22333444555666666776665554
No 470
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.45 E-value=4.9e+02 Score=26.22 Aligned_cols=126 Identities=14% Similarity=0.078 Sum_probs=70.9
Q ss_pred hcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHH
Q 038758 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSG 121 (354)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 121 (354)
..|+++.|++.-+... +..+|..|.....+.|+.+-|+..|+..+. |+.|--.|.-.|+.++..+
T Consensus 655 e~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred hcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHH
Confidence 3466666655544432 455677777777777777777777776553 2333344555566666555
Q ss_pred HHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 122 LFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 122 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
+..-.+....+-+.. ..-.-.|++++-.++++...+.+.. |- . ...+|.-++|.++.++..
T Consensus 720 m~~iae~r~D~~~~~-qnalYl~dv~ervkIl~n~g~~~la-yl---t-a~~~G~~~~ae~l~ee~~ 780 (1202)
T KOG0292|consen 720 MMKIAEIRNDATGQF-QNALYLGDVKERVKILENGGQLPLA-YL---T-AAAHGLEDQAEKLGEELE 780 (1202)
T ss_pred HHHHHHhhhhhHHHH-HHHHHhccHHHHHHHHHhcCcccHH-HH---H-HhhcCcHHHHHHHHHhhc
Confidence 544432211111111 1122347777777777776653322 21 1 123577788999998886
No 471
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=25.33 E-value=5.7e+02 Score=23.96 Aligned_cols=167 Identities=9% Similarity=0.088 Sum_probs=86.7
Q ss_pred ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhH
Q 038758 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVI 239 (354)
Q Consensus 160 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 239 (354)
|....-+++..+..+.++.-+..+-.+|. . +.-+...|-.++++|... ..++-..+|+++.+..++..... .
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l--~--~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~---R 136 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVL--E--YGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIG---R 136 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHH--H--hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHH---H
Confidence 44455567777777777777777777776 3 234556677777777766 45566666766666655221100 0
Q ss_pred HHHHHhcccC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCH-hhHHHHHHHhhccCcccCccccchhHHHH
Q 038758 240 CSCSVFNQLS-TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT-VTIVSVLPACLKLAALPQGLGTGSFVWNA 317 (354)
Q Consensus 240 ~a~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~~~~~~~~~~~~ 317 (354)
+-...++++. ..-...|.-.+..+.-..+.....++|.++.+. .|+. ..+-.++.-... +.+...-...+.-
T Consensus 137 eLa~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt----~lg~~~~~Vl~qd 210 (711)
T COG1747 137 ELADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQT----KLGEGRGSVLMQD 210 (711)
T ss_pred HHHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHH----hhccchHHHHHHH
Confidence 0011122211 112223333344444444445555555555532 1222 222222211111 1112233445666
Q ss_pred HHHHHHhcCChhHHHHHhhcCCC
Q 038758 318 LIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 318 li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
+-.-|....++++|.+++..+.+
T Consensus 211 v~~~Ys~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 211 VYKKYSENENWTEAIRILKHILE 233 (711)
T ss_pred HHHHhccccCHHHHHHHHHHHhh
Confidence 66788889999999999997776
No 472
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=25.26 E-value=4.6e+02 Score=24.58 Aligned_cols=91 Identities=10% Similarity=0.005 Sum_probs=59.7
Q ss_pred hHHHH-HHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHH--hccCChhhHHHHHHHHHHhccCCC--ceehhhH
Q 038758 32 NWTSM-MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKAC--SELKDYRVGKDVYDYMISIKFEGN--ACVKRPL 106 (354)
Q Consensus 32 ~y~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l 106 (354)
.|-.+ +++..+.|+...|..++.++.. .+.|.....-.++.+- ....+...|.+.+.+..-...+++ ...|...
T Consensus 64 ~~~llAa~al~~e~k~~qA~~Ll~ql~~-~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~~~~ls~~Qq~Ry~q~~ 142 (604)
T COG3107 64 DWLLLAARALVEEGKTAQAQALLNQLPQ-ELTDAQRAEKSLLAAELALAQKQPAAALQQLAKLLPADLSQNQQARYYQAR 142 (604)
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHhccc-cCCHHHHHHHHHHHHHHHHhccChHHHHHHHhhcchhhcCHHHHHHHHHHH
Confidence 44444 6777888888888888888876 5666666666666553 355678888888887766555555 3455666
Q ss_pred HHHHHhcCChhHHHHHH
Q 038758 107 LDLFIKCGRMEITSGLF 123 (354)
Q Consensus 107 i~~~~~~g~~~~a~~~~ 123 (354)
+.++...|+.=++.+-+
T Consensus 143 a~a~ea~~~~~~a~rar 159 (604)
T COG3107 143 ADALEARGDSIDAARAR 159 (604)
T ss_pred HHHHhcccchHHHHHHH
Confidence 66666665544444433
No 473
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=25.25 E-value=2.7e+02 Score=21.77 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=39.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC-----CCcCCc-ccHHHHHHHHhccC----C-------hhhHHHHHHHHHHh
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-----GVRPDH-FVCPKVYKACSELK----D-------YRVGKDVYDYMISI 94 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~p~~-~~~~~ll~~~~~~~----~-------~~~a~~~~~~m~~~ 94 (354)
-|-..+.-+++..+..++.+++++..++ .+.|+. .++..+-.++...+ + +++|.+.|+....
T Consensus 30 ~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~- 108 (186)
T PF06552_consen 30 NWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD- 108 (186)
T ss_dssp HHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh-
Confidence 4555555555555545555555554332 256665 44555655555433 3 3444445544443
Q ss_pred ccCCCceehhhHHHHHHh
Q 038758 95 KFEGNACVKRPLLDLFIK 112 (354)
Q Consensus 95 ~~~~~~~~~~~li~~~~~ 112 (354)
..|+..+|+.-+....+
T Consensus 109 -~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 109 -EDPNNELYRKSLEMAAK 125 (186)
T ss_dssp -H-TT-HHHHHHHHHHHT
T ss_pred -cCCCcHHHHHHHHHHHh
Confidence 47888888877766643
No 474
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=24.96 E-value=32 Score=30.53 Aligned_cols=36 Identities=14% Similarity=0.126 Sum_probs=19.1
Q ss_pred HHHHHHhhhcCCCCCcc---hHHHHHHHhhhhcCccccchh
Q 038758 183 LLDEMEMIQTDMQPNTI---SLSGVLAACAQVKGVKLGKAI 220 (354)
Q Consensus 183 ~~~~m~~~~~~~~p~~~---t~~~ll~~~~~~~~~~~a~~~ 220 (354)
+++.+. +.|+.|+.. +-.+++.++...+..++..++
T Consensus 101 v~kaL~--e~gl~p~~i~GtS~Gaivaa~~a~~~~~e~~~~ 139 (391)
T cd07229 101 VVKALW--LRGLLPRIITGTATGALIAALVGVHTDEELLRF 139 (391)
T ss_pred HHHHHH--HcCCCCceEEEecHHHHHHHHHHcCCHHHHHHH
Confidence 445555 677777753 355555555444443443333
No 475
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=24.75 E-value=5.8e+02 Score=25.21 Aligned_cols=26 Identities=15% Similarity=0.317 Sum_probs=17.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCcCCCHh
Q 038758 262 AFVRSGQVVDALDLLRDVIVANVKPNTV 289 (354)
Q Consensus 262 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 289 (354)
.|...+..+.|.+.|++.-+ +.|+..
T Consensus 296 ~ytDa~s~~~a~~WyrkaFe--veP~~~ 321 (1226)
T KOG4279|consen 296 NYTDAESLNHAIEWYRKAFE--VEPLEY 321 (1226)
T ss_pred CCcchhhHHHHHHHHHHHhc--cCchhh
Confidence 44556667788888887764 456554
No 476
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.39 E-value=4.7e+02 Score=24.45 Aligned_cols=99 Identities=13% Similarity=0.099 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcch
Q 038758 176 FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVV 255 (354)
Q Consensus 176 ~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 255 (354)
..++..+.+....+ ..|+..+......++.... |+...+...++.+...+..... ..+.+-...+....
T Consensus 176 s~~el~~~L~~i~~-~egi~i~~~Al~~ia~~s~--GdlR~aln~Lekl~~~~~~It~--------~~V~~~l~~~~~~~ 244 (504)
T PRK14963 176 TEEEIAGKLRRLLE-AEGREAEPEALQLVARLAD--GAMRDAESLLERLLALGTPVTR--------KQVEEALGLPPQER 244 (504)
T ss_pred CHHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHHhcCCCCCH--------HHHHHHHCCCcHHH
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCcCC
Q 038758 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKP 286 (354)
Q Consensus 256 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 286 (354)
...+++++.. ++..+|+.+++++...|..|
T Consensus 245 if~Li~al~~-~d~~~Al~~l~~Ll~~G~~~ 274 (504)
T PRK14963 245 LRGIAAALAQ-GDAAEALSGAAQLYRDGFAA 274 (504)
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHcCCCH
No 477
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=23.83 E-value=2.3e+02 Score=18.91 Aligned_cols=47 Identities=9% Similarity=0.175 Sum_probs=25.6
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHH
Q 038758 70 KVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEIT 119 (354)
Q Consensus 70 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 119 (354)
.+.......|+.+.|..+++.+.+.. ....+..++.++-+.|...-|
T Consensus 39 ~I~a~~~~~g~~~aa~~Ll~~L~~~r---~~~wf~~Fl~AL~~~g~~~la 85 (88)
T cd08812 39 QILAEERNKGNIAAAEELLDRLERCD---KPGWFQAFLDALRRTGNDDLA 85 (88)
T ss_pred HHHHHHhccChHHHHHHHHHHHHHhc---cCCcHHHHHHHHHHcCCccHH
Confidence 33333334466677777777666511 133466666666666654433
No 478
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=23.80 E-value=1.8e+02 Score=19.44 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=18.9
Q ss_pred hhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHH
Q 038758 237 FVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270 (354)
Q Consensus 237 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 270 (354)
+.+.|..+++.+......+|.++.+++-..|...
T Consensus 43 ~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~ 76 (86)
T cd08323 43 QKEKAVMLINMILTKDNHAYVSFYNALLHEGYKD 76 (86)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChH
Confidence 3444555555555555566666666666555433
No 479
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.62 E-value=5.5e+02 Score=23.17 Aligned_cols=153 Identities=10% Similarity=0.045 Sum_probs=79.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC--CcCCcccHHHHHHHHhccCChhhHHHHHHHHHHh---------ccCCCc
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKG--VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI---------KFEGNA 100 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---------~~~~~~ 100 (354)
.+.-+-..|...|+++.|++.+.+.+.-- .+..+..|-.+|..-.-.|++..+..+..+.... .+++..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 67777888888999999999998855431 1222334555666666677776666655555432 123333
Q ss_pred eehhhHHHHHHhcCChhHHHHHHHhhccccchhh-----------HHHHHHHhcCchhHHHH-----HhccCCCCChhhh
Q 038758 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNN-----------SLIDFYAKCRYLKVSHC-----KFSKIKQKDLVSW 164 (354)
Q Consensus 101 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----------~li~~~~~~~~~~~a~~-----~~~~~~~~~~~~~ 164 (354)
..+..|.....+ ++..|.+.|-..+.+..-|. ..+.+++--++-+--.. .|..+.+..+..+
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr 309 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLR 309 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHH
Confidence 444444443333 66666666655522222211 12222222222111111 1222223344445
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHH
Q 038758 165 NAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 165 ~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
..+..-| .+++...++++++++
T Consensus 310 ~il~~fy--~sky~~cl~~L~~~k 331 (466)
T KOG0686|consen 310 EILFKFY--SSKYASCLELLREIK 331 (466)
T ss_pred HHHHHHh--hhhHHHHHHHHHHhc
Confidence 4444444 366888888888883
No 480
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=23.56 E-value=1.1e+02 Score=22.57 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=29.7
Q ss_pred HHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHH
Q 038758 72 YKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDL 109 (354)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 109 (354)
+..+.+.|-..+.+.++++|.+.|+..+...|+.+++-
T Consensus 116 L~~ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 116 LALAKSKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred HHHHHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 33455678888888999999999998888888776653
No 481
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=23.45 E-value=7.7e+02 Score=24.82 Aligned_cols=29 Identities=14% Similarity=0.061 Sum_probs=23.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCcCC
Q 038758 258 SIISAFVRSGQVVDALDLLRDVIVANVKP 286 (354)
Q Consensus 258 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p 286 (354)
.|+......|+.++|.....++......+
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 56777888999999999999987754333
No 482
>PF01335 DED: Death effector domain; InterPro: IPR001875 The death effector domain (DED) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DED is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. The dimerisation of DED domains is mediated primarily by electrostatic interactions. DED domains can be found in isolation, or in combination with other domains. Domains associated with DED include: caspase catalytic domains (in caspase-8, -10), death domains (in FADD), nuclear localisation sequences (in DEDD), transmembrane domains (in Bap31 and Bar), nucleotide-binding domains (in Dap3), coiled-coil domains (in Hip and Hippi), SAM domains (in Bar), and E2-binding RING domains (in Bar) []. Several DED-containing proteins are involved in the regulation of apoptosis through their interactions with DED-containing caspases (IPR002398 from INTERPRO), such as caspases 8 and 10 in humans, both of which contain tandem pairs of DEDs. There are many DED-containing modulators of apoptosis, which can either enhance or inhibit caspase activation [].; GO: 0005515 protein binding, 0042981 regulation of apoptosis; PDB: 3CL3_A 2F1S_A 2BBZ_C 2BBR_A 1A1Z_A 2GF5_A 1A1W_A 1N3K_A.
Probab=23.40 E-value=2.2e+02 Score=18.59 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHH
Q 038758 82 RVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLF 123 (354)
Q Consensus 82 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 123 (354)
..+.++|..|.+.| ..+..-...|...+...|+.+-+..+.
T Consensus 37 ~~~~dlf~~Le~~~-~i~~~nl~~L~~lL~~i~R~DL~~~i~ 77 (84)
T PF01335_consen 37 KSGLDLFEELEKRG-LISPDNLSLLKELLKRIGRPDLLKKIE 77 (84)
T ss_dssp SSHHHHHHHHHHTT-SSSTTBHHHHHHHHHHTT-HHHHHHHH
T ss_pred chHHHHHHHHHHcC-CCCCccHHHHHHHHHHhCHHHHHHHHH
Confidence 34556666666665 333344455566666666665555443
No 483
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=23.24 E-value=6.3e+02 Score=23.76 Aligned_cols=54 Identities=13% Similarity=0.125 Sum_probs=28.2
Q ss_pred HHHHHHHhcCchhHHHHHhccCCC--CCh---hhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 135 SLIDFYAKCRYLKVSHCKFSKIKQ--KDL---VSWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 135 ~li~~~~~~~~~~~a~~~~~~~~~--~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
-|+.-|.+.+++++|..++..|.= -.. .+.+.+.+.+.+..--++-+..++.+.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~al 471 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAAL 471 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 355566666666666666666641 111 233444555555544455555555554
No 484
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.23 E-value=4.5e+02 Score=27.39 Aligned_cols=78 Identities=13% Similarity=0.168 Sum_probs=48.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCC---H-hhHHHHHHHhhccCcccCc-----cccch----hHHHHHH
Q 038758 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN---T-VTIVSVLPACLKLAALPQG-----LGTGS----FVWNALI 319 (354)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~-~t~~~li~~~~~~~~~~~~-----~~~~~----~~~~~li 319 (354)
...|...++.+-..+..+.+.++-....+. +.|+ . .+++.+.+-....|.+.++ -.||. .....|+
T Consensus 983 lhYYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlv 1061 (1480)
T KOG4521|consen 983 LHYYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 345677778888888888888876665542 2222 2 3456666666666666665 23333 3456677
Q ss_pred HHHHhcCChhHH
Q 038758 320 DMYGRCGAIQKS 331 (354)
Q Consensus 320 ~~~~~~g~~~~A 331 (354)
..++.+|.++.-
T Consensus 1062 ivLfecg~l~~L 1073 (1480)
T KOG4521|consen 1062 IVLFECGELEAL 1073 (1480)
T ss_pred HHHHhccchHHH
Confidence 778888877643
No 485
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=22.98 E-value=1.3e+02 Score=15.89 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=18.7
Q ss_pred HHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHH
Q 038758 6 QVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLF 53 (354)
Q Consensus 6 ~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~ 53 (354)
+..+.|.+.|+.++.. -.+|. ...|+.+.|.+++
T Consensus 4 ~~v~~L~~mGf~~~~~-~~AL~-------------~~~~nve~A~~~L 37 (37)
T PF00627_consen 4 EKVQQLMEMGFSREQA-REALR-------------ACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHHTS-HHHH-HHHHH-------------HTTTSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHH-HHHHH-------------HcCCCHHHHHHhC
Confidence 4566777778777633 22222 2345777777653
No 486
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.96 E-value=7.9e+02 Score=24.75 Aligned_cols=86 Identities=9% Similarity=0.068 Sum_probs=45.2
Q ss_pred HHHHhcCChhHHHHHHHhh-ccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHH
Q 038758 108 DLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDE 186 (354)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 186 (354)
..|...|+++.|.++-..- ..-..++-.-.+.|.+.+++..|-+++.++ ..+|..+.--|....+.+ +++.|-.
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~-~L~~~L~ 440 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQER-ALRTFLD 440 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHH-HHHHHHH
Confidence 4566777777777654432 111123333345566666777777777665 334555555555555554 4444433
Q ss_pred HHhhhcCCCCCcch
Q 038758 187 MEMIQTDMQPNTIS 200 (354)
Q Consensus 187 m~~~~~~~~p~~~t 200 (354)
=+ ...++|...+
T Consensus 441 KK--L~~lt~~dk~ 452 (911)
T KOG2034|consen 441 KK--LDRLTPEDKT 452 (911)
T ss_pred HH--HhhCChHHHH
Confidence 33 4455554433
No 487
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.95 E-value=2.3e+02 Score=19.66 Aligned_cols=41 Identities=15% Similarity=0.033 Sum_probs=20.7
Q ss_pred HHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHh
Q 038758 85 KDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEE 125 (354)
Q Consensus 85 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 125 (354)
++.++.....+...-+.....|--.|++.|+.+.+.+-|+.
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 34444444333222222333455556667777776666654
No 488
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=22.88 E-value=1.6e+02 Score=19.76 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=16.5
Q ss_pred HHHHHHhcccCCCCcchHHHHHHHHHhcCC
Q 038758 239 ICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268 (354)
Q Consensus 239 ~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 268 (354)
+.+..+++.++.....+|..+..++-..+.
T Consensus 51 ~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 51 SQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 444444444445555667777777655443
No 489
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=22.64 E-value=2.5e+02 Score=18.83 Aligned_cols=44 Identities=18% Similarity=-0.036 Sum_probs=37.1
Q ss_pred HHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHh
Q 038758 51 NLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI 94 (354)
Q Consensus 51 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 94 (354)
++|+-....|+..|...|..++..+.-.-..+...+++..|...
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 88888899999999999999998887777777778888887643
No 490
>PLN03025 replication factor C subunit; Provisional
Probab=22.41 E-value=5e+02 Score=22.29 Aligned_cols=84 Identities=8% Similarity=0.031 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhC------------CCcCCcccHH
Q 038758 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDK------------GVRPDHFVCP 69 (354)
Q Consensus 2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~------------~~~p~~~~~~ 69 (354)
+....+.....+.|+..+......++... .|++..+...++..... .-.+......
T Consensus 162 ~l~~~L~~i~~~egi~i~~~~l~~i~~~~------------~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~ 229 (319)
T PLN03025 162 EILGRLMKVVEAEKVPYVPEGLEAIIFTA------------DGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVK 229 (319)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc------------CCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHH
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhccCC
Q 038758 70 KVYKACSELKDYRVGKDVYDYMISIKFEG 98 (354)
Q Consensus 70 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 98 (354)
.++..+.. ++++.|.+.+..+...|.+|
T Consensus 230 ~~i~~~~~-~~~~~a~~~l~~ll~~g~~~ 257 (319)
T PLN03025 230 NIVRNCLK-GKFDDACDGLKQLYDLGYSP 257 (319)
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHcCCCH
No 491
>cd00045 DED The Death Effector Domain: a protein-protein interaction domain. Death Effector Domains comprise a subfamily of the Death Domain (DD) superfamily. DED-containing proteins include Fas-Associated via Death Domain (FADD), Astrocyte phosphoprotein PEA-15, the initiator caspases (caspase-8 and -10), and FLICE-inhibitory protein (FLIP), among others. These proteins are prominent components of the programmed cell death (apoptosis) pathway. Some members also have non-apoptotic functions such as regulation of insulin signaling (DEDD and PEA15) and cell cycle progression (DEDD). DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes.
Probab=22.31 E-value=1.6e+02 Score=19.07 Aligned_cols=39 Identities=13% Similarity=0.064 Sum_probs=22.5
Q ss_pred ChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHH
Q 038758 80 DYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEIT 119 (354)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 119 (354)
+...+.++|..+.+.| ..+..-...|...+..-|+.+-+
T Consensus 35 ~~~s~l~lf~~Le~~~-~l~~~nl~~L~~lL~~i~R~DL~ 73 (77)
T cd00045 35 KIKTPFDLFLVLERQG-KLGEDNLSYLEELLRSIGRNDLL 73 (77)
T ss_pred ccCCHHHHHHHHHHcC-CCCCchHHHHHHHHHHcCHHHHH
Confidence 4556667777777766 33334445555555555555544
No 492
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=22.25 E-value=1.6e+02 Score=17.19 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=20.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCcCCC
Q 038758 260 ISAFVRSGQVVDALDLLRDVIVANVKPN 287 (354)
Q Consensus 260 i~~~~~~g~~~~a~~~~~~m~~~g~~p~ 287 (354)
|+.+...|--.+++.+.-++.+.|+.|.
T Consensus 11 iS~lLntgLd~etL~ici~L~e~GVnPe 38 (48)
T PF12554_consen 11 ISDLLNTGLDRETLSICIELCENGVNPE 38 (48)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHCCCCHH
Confidence 3445566777788888888888888775
No 493
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=22.20 E-value=5.8e+02 Score=24.36 Aligned_cols=125 Identities=12% Similarity=-0.019 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758 47 EEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 47 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
+.+-.++.-|.. .+.|-=...|...-.+...|+...|..++.........-.-+....|...+.+.|....|..++.+-
T Consensus 590 e~~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~ 668 (886)
T KOG4507|consen 590 EIGSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQA 668 (886)
T ss_pred HHHHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHH
Confidence 344455555542 2223222223223234467888888888776654332223445566777778888888887777664
Q ss_pred ----ccccchhhHHHHHHHhcCchhHHHHHhccCCCC---ChhhhHHHHHHHH
Q 038758 127 ----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK---DLVSWNAMLAGYA 172 (354)
Q Consensus 127 ----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~ 172 (354)
.....++-.+..+|.-..++++|++.|++..+. +...-+.|...-|
T Consensus 669 l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 669 LAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 334556667778888888999999888766542 3344444444433
No 494
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=22.10 E-value=4.4e+02 Score=24.36 Aligned_cols=109 Identities=12% Similarity=0.058 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhh
Q 038758 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRV 83 (354)
Q Consensus 4 a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 83 (354)
.+++++.++...-.|+....-+.| +...|+++.+.+.+...... +.....+-..+++...+.|+.+.
T Consensus 309 s~~~~~~lr~~~~~p~~i~l~~~i------------~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 309 SQQLFAALRNQQQDPVLIQLRSVI------------FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HHHHHHHHHhCCCCchhhHHHHHH------------HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Q ss_pred HHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758 84 GKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 84 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
|..+-+-|.... ..+..+.+.-.-.--..|-++++.-.|.++
T Consensus 376 a~s~a~~~l~~e-ie~~ei~~iaa~sa~~l~~~d~~~~~wk~~ 417 (831)
T PRK15180 376 ALSTAEMMLSNE-IEDEEVLTVAAGSADALQLFDKSYHYWKRV 417 (831)
T ss_pred HHHHHHHHhccc-cCChhheeeecccHHHHhHHHHHHHHHHHH
No 495
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=21.82 E-value=2.4e+02 Score=22.74 Aligned_cols=82 Identities=17% Similarity=0.124 Sum_probs=56.5
Q ss_pred ChhHHHHHHHHHHhCCCc-------CCcccHHHHHHHHhccC---------ChhhHHHHHHHHHHhccCC-CceehhhHH
Q 038758 45 YYEEIVNLFYLMIDKGVR-------PDHFVCPKVYKACSELK---------DYRVGKDVYDYMISIKFEG-NACVKRPLL 107 (354)
Q Consensus 45 ~~~~a~~~~~~m~~~~~~-------p~~~~~~~ll~~~~~~~---------~~~~a~~~~~~m~~~~~~~-~~~~~~~li 107 (354)
..+.|..+++.|--..++ -...-|..+..+|.+.| +.+....+++..++.|++. =+..|+.+|
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 356778888887655432 23445788888888877 5566777888888888653 456788888
Q ss_pred HHHHhcCChhHHHHHHHhh
Q 038758 108 DLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~~ 126 (354)
+--.-.-+++++.+++..+
T Consensus 216 Dk~tG~TrpedV~~l~~~~ 234 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAIV 234 (236)
T ss_pred ccccCCCCHHHHHHHHHHh
Confidence 7666666777777776643
No 496
>smart00031 DED Death effector domain.
Probab=21.79 E-value=2.1e+02 Score=18.54 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHH
Q 038758 81 YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGL 122 (354)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 122 (354)
...+.++|..+.+.| ..+......|...+...|+.+-+..+
T Consensus 37 ~~~~ldlf~~Le~~~-~l~~~nl~~L~elL~~i~R~DLl~~i 77 (79)
T smart00031 37 IKTFLDLFSALEEQG-LLSEDNLSLLAELLYRLRRLDLLRRL 77 (79)
T ss_pred cCCHHHHHHHHHHcC-CCCCccHHHHHHHHHHcCHHHHHHHh
Confidence 466777777777776 44444555666666666666655443
No 497
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=21.78 E-value=7.3e+02 Score=24.84 Aligned_cols=99 Identities=10% Similarity=0.094 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHH
Q 038758 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWN 257 (354)
Q Consensus 178 ~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 257 (354)
++..+.++.+.. ..|+..+......+.+. ..|+...+..++++....+. +.+.. ..+.+.+-..|.....
T Consensus 181 eeIv~~L~~Il~-~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~------~~It~-~~V~~~LG~~d~~~i~ 250 (830)
T PRK07003 181 GHIVSHLERILG-EERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSA------NEVTE-TAVSGMLGALDQTYMV 250 (830)
T ss_pred HHHHHHHHHHHH-HcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcc------CCcCH-HHHHHHhCCCCHHHHH
Confidence 445555555442 45666665555555443 34777777777666554331 11111 1111212234444555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCcCCC
Q 038758 258 SIISAFVRSGQVVDALDLLRDVIVANVKPN 287 (354)
Q Consensus 258 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 287 (354)
.++.++. .|+..+++.+++++...|+.+.
T Consensus 251 ~ll~aL~-~~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 251 RLLDALA-AGDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHHhCCCHH
Confidence 5666544 4899999999999998887654
No 498
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=21.70 E-value=1.5e+02 Score=15.87 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCChhHHHHHhh
Q 038758 315 WNALIDMYGRCGAIQKSRKIFV 336 (354)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~ 336 (354)
+-.+.-.+-..|++++|..+|+
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 4456667788999999999944
No 499
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=21.61 E-value=1.9e+02 Score=21.47 Aligned_cols=40 Identities=13% Similarity=0.246 Sum_probs=32.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHH
Q 038758 36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKAC 75 (354)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 75 (354)
++..+.+.|-..+...++++|.++|+..+...|+.+++-.
T Consensus 115 vL~~ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 115 VLALAKSKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred HHHHHHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 3444556788889999999999999999999998887644
No 500
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=21.21 E-value=2.9e+02 Score=20.09 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=24.7
Q ss_pred eehhhHHHHHHhcCChhHHHHHHHhhccccchh---hHHHHHHHhcCchhHHHH
Q 038758 101 CVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVN---NSLIDFYAKCRYLKVSHC 151 (354)
Q Consensus 101 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~ 151 (354)
.+..++..++.-.|..+.|.++++..+....-+ .-++..|.++.+-++..+
T Consensus 67 scvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~ 120 (127)
T PF04034_consen 67 SCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIE 120 (127)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 344455555666666666666665553222211 124455555544444433
Done!