Query 038758
Match_columns 354
No_of_seqs 357 out of 1550
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 04:17:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038758.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038758hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 7.3E-35 2.5E-39 261.7 15.5 205 4-265 9-222 (501)
2 4g26_A Pentatricopeptide repea 100.0 1.5E-33 5E-38 253.3 12.1 214 47-327 7-225 (501)
3 2xpi_A Anaphase-promoting comp 100.0 6E-30 2E-34 237.3 22.3 334 2-340 101-578 (597)
4 2xpi_A Anaphase-promoting comp 100.0 7.2E-29 2.5E-33 230.1 17.9 314 32-353 86-526 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 1.4E-22 4.7E-27 177.9 25.5 321 2-340 16-367 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 4.1E-22 1.4E-26 174.9 23.5 308 37-352 6-348 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 1.6E-20 5.4E-25 167.9 23.0 284 32-343 28-362 (450)
8 2gw1_A Mitochondrial precursor 99.8 1.3E-18 4.6E-23 157.9 23.3 322 2-340 23-477 (514)
9 2gw1_A Mitochondrial precursor 99.8 1.8E-18 6.3E-23 157.0 20.2 301 32-340 8-443 (514)
10 3spa_A Mtrpol, DNA-directed RN 99.8 2E-20 6.9E-25 173.8 6.7 120 161-300 127-248 (1134)
11 2y4t_A DNAJ homolog subfamily 99.8 2E-18 6.9E-23 154.2 19.2 277 48-352 10-338 (450)
12 3ieg_A DNAJ homolog subfamily 99.8 3.3E-17 1.1E-21 141.5 24.0 283 32-342 5-338 (359)
13 3hym_B Cell division cycle pro 99.8 8.5E-17 2.9E-21 137.4 25.5 266 32-340 24-298 (330)
14 3spa_A Mtrpol, DNA-directed RN 99.8 1.1E-19 3.7E-24 169.0 6.0 144 32-175 129-286 (1134)
15 4eqf_A PEX5-related protein; a 99.8 3.8E-17 1.3E-21 142.0 17.6 268 32-338 67-353 (365)
16 1fch_A Peroxisomal targeting s 99.8 1.2E-16 4.2E-21 138.7 20.8 267 32-338 66-356 (368)
17 3cv0_A Peroxisome targeting si 99.7 1.8E-16 6E-21 135.2 19.8 270 32-340 23-314 (327)
18 3hym_B Cell division cycle pro 99.7 1.3E-15 4.6E-20 129.9 24.0 261 2-298 39-314 (330)
19 3fp2_A TPR repeat-containing p 99.7 1.6E-16 5.4E-21 145.1 19.1 302 32-340 27-456 (537)
20 3fp2_A TPR repeat-containing p 99.7 7.1E-16 2.4E-20 140.8 20.9 324 2-340 42-490 (537)
21 1b89_A Protein (clathrin heavy 99.7 3.2E-17 1.1E-21 141.6 11.1 255 32-335 34-305 (449)
22 1fch_A Peroxisomal targeting s 99.7 2.1E-16 7E-21 137.3 14.0 277 15-340 9-313 (368)
23 4eqf_A PEX5-related protein; a 99.7 6.8E-16 2.3E-20 134.0 15.2 229 63-340 63-309 (365)
24 3ieg_A DNAJ homolog subfamily 99.7 5.7E-15 2E-19 127.3 20.9 271 2-307 20-325 (359)
25 3mkr_A Coatomer subunit epsilo 99.7 1.7E-15 5.9E-20 127.1 16.6 214 37-282 6-229 (291)
26 3mkr_A Coatomer subunit epsilo 99.6 4.9E-15 1.7E-19 124.3 16.3 225 34-289 38-269 (291)
27 1b89_A Protein (clathrin heavy 99.6 7.1E-16 2.4E-20 133.2 9.1 209 42-307 15-226 (449)
28 3cv0_A Peroxisome targeting si 99.6 9.5E-15 3.2E-19 124.4 14.7 254 2-280 38-313 (327)
29 3uq3_A Heat shock protein STI1 99.6 8.8E-14 3E-18 114.1 18.7 221 32-282 7-236 (258)
30 3u4t_A TPR repeat-containing p 99.5 5E-12 1.7E-16 104.7 24.8 229 35-289 8-255 (272)
31 1xnf_A Lipoprotein NLPI; TPR, 99.5 6.6E-14 2.3E-18 116.2 13.0 220 41-282 16-244 (275)
32 2pl2_A Hypothetical conserved 99.5 9.6E-14 3.3E-18 111.3 12.4 191 64-280 4-212 (217)
33 4g1t_A Interferon-induced prot 99.5 6.9E-13 2.4E-17 119.1 18.8 306 32-340 53-458 (472)
34 3uq3_A Heat shock protein STI1 99.5 3E-13 1E-17 111.0 15.0 217 66-340 6-235 (258)
35 2ho1_A Type 4 fimbrial biogene 99.5 1.2E-12 4.1E-17 107.2 17.7 197 68-291 40-245 (252)
36 1xi4_A Clathrin heavy chain; a 99.5 4.8E-12 1.6E-16 122.1 22.8 281 34-340 989-1308(1630)
37 2vq2_A PILW, putative fimbrial 99.5 1.6E-12 5.5E-17 104.2 16.3 209 32-293 10-220 (225)
38 2ho1_A Type 4 fimbrial biogene 99.5 2.5E-12 8.5E-17 105.3 16.9 192 32-228 39-239 (252)
39 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.2E-12 4E-17 108.6 14.7 240 2-276 22-269 (275)
40 2q7f_A YRRB protein; TPR, prot 99.5 8.2E-13 2.8E-17 107.4 12.8 198 32-282 25-222 (243)
41 2vq2_A PILW, putative fimbrial 99.4 3.1E-12 1E-16 102.6 15.7 156 32-188 44-209 (225)
42 3u4t_A TPR repeat-containing p 99.4 4.4E-12 1.5E-16 105.0 17.0 235 65-343 3-254 (272)
43 2q7f_A YRRB protein; TPR, prot 99.4 5.1E-13 1.7E-17 108.6 11.0 155 32-188 59-220 (243)
44 4a1s_A PINS, partner of inscut 99.4 1E-12 3.4E-17 115.8 13.6 268 32-339 50-370 (411)
45 2pl2_A Hypothetical conserved 99.4 1.8E-12 6.2E-17 103.8 13.6 189 32-226 7-213 (217)
46 3ro2_A PINS homolog, G-protein 99.4 1.7E-12 5.9E-17 110.5 13.3 269 33-340 8-331 (338)
47 2xm6_A Protein corresponding t 99.4 1.5E-10 5.1E-15 104.5 25.7 295 32-340 77-431 (490)
48 3sf4_A G-protein-signaling mod 99.4 3.8E-12 1.3E-16 111.6 14.8 231 32-282 11-296 (406)
49 2h6f_A Protein farnesyltransfe 99.4 1.3E-11 4.6E-16 107.1 17.8 230 32-291 99-355 (382)
50 1ouv_A Conserved hypothetical 99.4 4.7E-11 1.6E-15 99.0 18.6 218 32-283 8-252 (273)
51 2xm6_A Protein corresponding t 99.4 2.3E-10 7.9E-15 103.3 24.0 296 32-341 41-396 (490)
52 3nf1_A KLC 1, kinesin light ch 99.4 2.5E-12 8.6E-17 108.5 9.6 227 32-281 29-306 (311)
53 2h6f_A Protein farnesyltransfe 99.3 3.4E-11 1.2E-15 104.5 15.7 223 66-340 98-347 (382)
54 1ouv_A Conserved hypothetical 99.3 2E-10 7E-15 95.2 19.5 219 64-340 5-250 (273)
55 2ooe_A Cleavage stimulation fa 99.3 3.1E-10 1.1E-14 103.5 21.6 105 234-340 333-453 (530)
56 2ond_A Cleavage stimulation fa 99.3 1.9E-10 6.4E-15 97.3 18.0 110 47-157 33-161 (308)
57 3ulq_A Response regulator aspa 99.3 5.2E-11 1.8E-15 103.9 14.5 294 2-340 29-367 (383)
58 3nf1_A KLC 1, kinesin light ch 99.3 3.8E-11 1.3E-15 101.2 13.3 236 64-339 26-305 (311)
59 1xi4_A Clathrin heavy chain; a 99.3 2E-09 6.7E-14 104.4 25.6 166 32-220 1107-1272(1630)
60 2ond_A Cleavage stimulation fa 99.3 2.4E-10 8.2E-15 96.6 17.5 92 32-126 52-160 (308)
61 4a1s_A PINS, partner of inscut 99.3 2.9E-11 1E-15 106.4 11.0 259 2-282 65-372 (411)
62 4abn_A Tetratricopeptide repea 99.2 2.5E-11 8.7E-16 108.9 10.6 209 46-279 84-318 (474)
63 3ro2_A PINS homolog, G-protein 99.2 6.6E-11 2.3E-15 100.6 12.8 259 2-282 22-332 (338)
64 3vtx_A MAMA; tetratricopeptide 99.2 1.2E-10 4.2E-15 90.3 13.2 155 32-188 7-168 (184)
65 3sf4_A G-protein-signaling mod 99.2 8.3E-11 2.8E-15 103.0 13.6 283 2-306 26-365 (406)
66 4abn_A Tetratricopeptide repea 99.2 7.2E-11 2.5E-15 106.0 12.8 211 81-339 84-319 (474)
67 3vtx_A MAMA; tetratricopeptide 99.2 1.4E-10 4.7E-15 90.1 12.2 172 64-289 4-175 (184)
68 3as5_A MAMA; tetratricopeptide 99.2 1.9E-10 6.6E-15 88.9 12.1 155 32-188 10-171 (186)
69 4g1t_A Interferon-induced prot 99.2 6E-10 2E-14 99.9 16.3 252 62-340 48-362 (472)
70 2ooe_A Cleavage stimulation fa 99.2 3.8E-09 1.3E-13 96.3 21.8 268 43-340 143-491 (530)
71 3as5_A MAMA; tetratricopeptide 99.2 5.9E-10 2E-14 86.1 13.9 160 132-340 10-172 (186)
72 1hz4_A MALT regulatory protein 99.1 5.7E-09 1.9E-13 90.5 20.2 225 36-282 20-282 (373)
73 3edt_B KLC 2, kinesin light ch 99.1 5.1E-10 1.7E-14 92.7 12.4 224 41-281 12-280 (283)
74 3ulq_A Response regulator aspa 99.1 1.6E-09 5.4E-14 94.5 15.7 228 33-282 106-368 (383)
75 3edt_B KLC 2, kinesin light ch 99.1 8.3E-10 2.8E-14 91.4 12.2 228 76-339 12-279 (283)
76 4gyw_A UDP-N-acetylglucosamine 99.1 1.1E-09 3.7E-14 102.6 14.0 155 32-188 11-172 (723)
77 3q15_A PSP28, response regulat 99.1 5.3E-09 1.8E-13 91.0 16.4 225 72-339 108-363 (378)
78 1qqe_A Vesicular transport pro 99.1 9.9E-09 3.4E-13 85.9 16.8 196 109-343 46-271 (292)
79 4i17_A Hypothetical protein; T 99.0 5.5E-09 1.9E-13 84.0 13.5 145 32-177 9-169 (228)
80 2fo7_A Synthetic consensus TPR 99.0 5E-09 1.7E-13 76.1 11.1 128 32-188 3-130 (136)
81 1qqe_A Vesicular transport pro 99.0 8.4E-09 2.9E-13 86.3 13.6 188 75-280 47-267 (292)
82 4gyw_A UDP-N-acetylglucosamine 99.0 3E-09 1E-13 99.6 11.8 160 64-228 8-175 (723)
83 3e4b_A ALGK; tetratricopeptide 98.9 1.4E-08 4.8E-13 90.5 14.1 101 37-144 10-120 (452)
84 3q15_A PSP28, response regulat 98.9 4.6E-08 1.6E-12 85.0 16.6 223 36-281 107-364 (378)
85 1hz4_A MALT regulatory protein 98.9 8.8E-08 3E-12 82.9 17.7 233 32-282 55-322 (373)
86 4i17_A Hypothetical protein; T 98.9 7.4E-08 2.5E-12 77.3 16.0 193 64-290 6-215 (228)
87 2fo7_A Synthetic consensus TPR 98.9 1.6E-08 5.4E-13 73.3 10.6 131 67-228 3-133 (136)
88 3e4b_A ALGK; tetratricopeptide 98.9 1.1E-07 3.6E-12 84.8 17.7 167 2-188 20-206 (452)
89 3urz_A Uncharacterized protein 98.8 9.3E-08 3.2E-12 75.6 12.9 160 37-202 11-194 (208)
90 3qky_A Outer membrane assembly 98.8 4.9E-08 1.7E-12 80.1 11.3 181 33-219 18-253 (261)
91 3mv2_B Coatomer subunit epsilo 98.8 5.3E-08 1.8E-12 80.7 11.3 178 49-229 85-284 (310)
92 3mv2_B Coatomer subunit epsilo 98.8 8E-08 2.7E-12 79.6 11.8 186 84-289 85-287 (310)
93 2ifu_A Gamma-SNAP; membrane fu 98.8 4.9E-07 1.7E-11 76.1 17.1 197 42-280 3-222 (307)
94 2yhc_A BAMD, UPF0169 lipoprote 98.7 5.2E-07 1.8E-11 72.2 14.3 178 33-229 7-215 (225)
95 3u3w_A Transcriptional activat 98.7 4.6E-07 1.6E-11 75.7 14.4 111 16-126 42-181 (293)
96 2pzi_A Probable serine/threoni 98.7 9.7E-08 3.3E-12 89.5 11.3 166 41-213 402-583 (681)
97 3qky_A Outer membrane assembly 98.7 2E-07 6.8E-12 76.4 11.2 161 64-227 14-224 (261)
98 2r5s_A Uncharacterized protein 98.6 8.7E-07 3E-11 67.9 13.6 154 135-337 11-169 (176)
99 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.4E-06 4.7E-11 68.8 14.9 157 133-298 9-166 (213)
100 3qou_A Protein YBBN; thioredox 98.6 3.5E-07 1.2E-11 76.2 11.8 162 97-280 114-282 (287)
101 2pzi_A Probable serine/threoni 98.6 1.1E-07 3.7E-12 89.3 9.2 166 76-268 402-583 (681)
102 2r5s_A Uncharacterized protein 98.6 5.3E-07 1.8E-11 69.1 11.6 153 105-280 11-171 (176)
103 2vsy_A XCC0866; transferase, g 98.6 1.7E-07 5.9E-12 86.1 10.2 144 43-188 2-155 (568)
104 4ga2_A E3 SUMO-protein ligase 98.6 5.7E-08 1.9E-12 72.5 5.6 85 40-126 7-91 (150)
105 3qou_A Protein YBBN; thioredox 98.6 4.4E-07 1.5E-11 75.6 11.6 162 62-226 114-283 (287)
106 2qfc_A PLCR protein; TPR, HTH, 98.6 9.3E-07 3.2E-11 73.8 13.6 65 162-226 197-265 (293)
107 3urz_A Uncharacterized protein 98.6 3.7E-07 1.3E-11 72.2 10.5 156 167-349 10-196 (208)
108 3rjv_A Putative SEL1 repeat pr 98.5 1.6E-06 5.6E-11 68.6 12.7 171 48-229 4-199 (212)
109 2yhc_A BAMD, UPF0169 lipoprote 98.5 8.7E-07 3E-11 70.9 11.1 167 66-249 5-211 (225)
110 1hh8_A P67PHOX, NCF-2, neutrop 98.5 1.3E-06 4.6E-11 68.9 11.3 137 33-188 9-148 (213)
111 2ifu_A Gamma-SNAP; membrane fu 98.5 2.5E-06 8.6E-11 71.7 13.5 156 32-188 38-222 (307)
112 1na0_A Designed protein CTPR3; 98.5 2E-06 6.7E-11 61.1 11.1 93 32-126 11-103 (125)
113 4e6h_A MRNA 3'-END-processing 98.5 4E-06 1.4E-10 77.8 15.7 222 83-351 327-582 (679)
114 1a17_A Serine/threonine protei 98.5 1.8E-06 6.2E-11 65.0 11.1 93 32-126 15-107 (166)
115 4ga2_A E3 SUMO-protein ligase 98.5 1.7E-07 5.8E-12 69.9 5.1 136 72-212 4-148 (150)
116 2vsy_A XCC0866; transferase, g 98.5 7.8E-07 2.7E-11 81.7 10.4 147 78-228 2-158 (568)
117 3dra_A Protein farnesyltransfe 98.4 3.6E-05 1.2E-09 64.2 19.2 222 36-281 39-286 (306)
118 2lni_A Stress-induced-phosphop 98.4 4.4E-06 1.5E-10 60.1 11.6 110 32-143 18-131 (133)
119 4e6h_A MRNA 3'-END-processing 98.4 1.2E-05 4E-10 74.8 16.8 230 47-301 326-587 (679)
120 3rjv_A Putative SEL1 repeat pr 98.4 3.1E-06 1.1E-10 67.0 11.3 176 82-285 3-200 (212)
121 2vyi_A SGTA protein; chaperone 98.4 4.1E-06 1.4E-10 59.9 11.0 112 32-145 14-129 (131)
122 2c2l_A CHIP, carboxy terminus 98.4 1.5E-06 5E-11 72.2 9.2 187 32-226 6-198 (281)
123 4gco_A Protein STI-1; structur 98.4 4.2E-06 1.4E-10 60.2 10.3 93 32-126 15-107 (126)
124 3gw4_A Uncharacterized protein 98.4 1.2E-06 4E-11 68.5 8.1 163 141-340 3-175 (203)
125 3gw4_A Uncharacterized protein 98.3 1.5E-06 5E-11 68.0 8.3 147 41-188 3-174 (203)
126 2e2e_A Formate-dependent nitri 98.3 1.7E-06 6E-11 66.1 8.5 111 77-188 22-142 (177)
127 3gyz_A Chaperone protein IPGC; 98.3 6.9E-06 2.4E-10 61.0 11.1 93 32-126 38-130 (151)
128 4f3v_A ESX-1 secretion system 98.3 6.3E-06 2.2E-10 67.4 11.1 183 42-229 18-239 (282)
129 1a17_A Serine/threonine protei 98.3 3.5E-06 1.2E-10 63.4 8.8 120 67-187 15-143 (166)
130 2e2e_A Formate-dependent nitri 98.3 1.1E-06 3.7E-11 67.3 5.8 117 40-158 20-143 (177)
131 2c2l_A CHIP, carboxy terminus 98.3 2E-06 6.7E-11 71.4 7.6 93 64-157 3-99 (281)
132 3u3w_A Transcriptional activat 98.3 1.9E-05 6.4E-10 65.8 13.7 159 107-281 82-265 (293)
133 1na0_A Designed protein CTPR3; 98.3 1.2E-05 3.9E-10 57.0 10.7 98 161-282 9-106 (125)
134 3gyz_A Chaperone protein IPGC; 98.3 7.6E-06 2.6E-10 60.8 9.9 94 67-188 38-131 (151)
135 2qfc_A PLCR protein; TPR, HTH, 98.2 1.8E-05 6.3E-10 65.9 13.0 162 102-281 77-265 (293)
136 1p5q_A FKBP52, FK506-binding p 98.2 7E-06 2.4E-10 70.0 10.5 92 32-126 149-256 (336)
137 4f3v_A ESX-1 secretion system 98.2 1.6E-05 5.5E-10 65.0 11.8 185 77-287 18-240 (282)
138 2vyi_A SGTA protein; chaperone 98.2 2E-05 6.8E-10 56.2 11.0 119 160-303 11-129 (131)
139 2vgx_A Chaperone SYCD; alterna 98.2 1.9E-06 6.6E-11 63.9 5.3 93 68-188 24-116 (148)
140 3dra_A Protein farnesyltransfe 98.2 7.6E-05 2.6E-09 62.3 15.4 215 79-340 47-286 (306)
141 4gco_A Protein STI-1; structur 98.2 2.4E-05 8.3E-10 56.1 10.5 103 162-290 14-116 (126)
142 2lni_A Stress-induced-phosphop 98.1 2.8E-05 9.6E-10 55.7 10.9 99 160-282 15-113 (133)
143 2xcb_A PCRH, regulatory protei 98.1 3.3E-05 1.1E-09 56.6 11.4 93 32-126 20-112 (142)
144 2vgx_A Chaperone SYCD; alterna 98.1 2E-05 6.9E-10 58.3 10.1 93 32-126 23-115 (148)
145 1elw_A TPR1-domain of HOP; HOP 98.1 3.9E-05 1.3E-09 53.5 10.8 93 32-126 6-98 (118)
146 1elr_A TPR2A-domain of HOP; HO 98.1 1.7E-05 5.9E-10 56.6 8.9 94 32-126 6-105 (131)
147 4b4t_Q 26S proteasome regulato 98.1 2.4E-05 8.4E-10 68.9 11.6 190 38-227 12-245 (434)
148 3ro3_A PINS homolog, G-protein 98.1 1.6E-05 5.3E-10 59.2 8.9 134 32-188 11-156 (164)
149 4b4t_Q 26S proteasome regulato 98.1 3E-05 1E-09 68.3 12.0 193 72-281 11-244 (434)
150 3upv_A Heat shock protein STI1 98.1 3.3E-05 1.1E-09 55.2 9.9 93 32-126 6-98 (126)
151 2fbn_A 70 kDa peptidylprolyl i 98.0 4.1E-05 1.4E-09 59.6 10.5 118 32-150 40-176 (198)
152 2kck_A TPR repeat; tetratricop 98.0 2.5E-05 8.6E-10 54.0 8.1 92 33-126 9-103 (112)
153 3q49_B STIP1 homology and U bo 98.0 7.2E-05 2.5E-09 54.1 10.6 93 32-126 11-103 (137)
154 1p5q_A FKBP52, FK506-binding p 98.0 1.9E-05 6.5E-10 67.3 8.5 145 44-225 127-292 (336)
155 1wao_1 Serine/threonine protei 98.0 5.2E-05 1.8E-09 67.8 11.7 117 36-154 12-134 (477)
156 3q7a_A Farnesyltransferase alp 98.0 0.0011 3.9E-08 56.0 18.8 242 32-281 56-330 (349)
157 3sz7_A HSC70 cochaperone (SGT) 98.0 5.2E-05 1.8E-09 57.0 9.8 93 32-126 13-105 (164)
158 2kck_A TPR repeat; tetratricop 98.0 3.1E-05 1.1E-09 53.5 7.7 96 65-188 6-104 (112)
159 1hxi_A PEX5, peroxisome target 98.0 4.2E-05 1.4E-09 54.4 8.4 91 34-126 21-111 (121)
160 3ro3_A PINS homolog, G-protein 97.9 2.4E-05 8.3E-10 58.1 7.3 139 67-228 11-159 (164)
161 2xcb_A PCRH, regulatory protei 97.9 3.1E-05 1E-09 56.8 7.7 94 67-188 20-113 (142)
162 3q49_B STIP1 homology and U bo 97.9 4.5E-05 1.5E-09 55.2 8.4 98 63-188 7-104 (137)
163 4gcn_A Protein STI-1; structur 97.9 3.5E-05 1.2E-09 55.3 7.7 62 32-94 10-71 (127)
164 3upv_A Heat shock protein STI1 97.9 0.0001 3.5E-09 52.5 9.9 97 162-282 5-101 (126)
165 2fbn_A 70 kDa peptidylprolyl i 97.9 2.3E-05 7.7E-10 61.1 6.7 125 135-282 9-151 (198)
166 2dba_A Smooth muscle cell asso 97.9 0.00013 4.3E-09 53.4 10.5 92 32-126 30-125 (148)
167 4gcn_A Protein STI-1; structur 97.9 9.8E-05 3.4E-09 52.9 9.5 96 67-163 10-118 (127)
168 1elw_A TPR1-domain of HOP; HOP 97.9 0.00017 5.7E-09 50.2 10.5 98 161-282 4-101 (118)
169 1elr_A TPR2A-domain of HOP; HO 97.9 7.2E-05 2.4E-09 53.3 8.7 111 162-295 5-119 (131)
170 1hxi_A PEX5, peroxisome target 97.8 5.6E-05 1.9E-09 53.7 7.4 88 67-155 19-110 (121)
171 3sz7_A HSC70 cochaperone (SGT) 97.8 4.9E-05 1.7E-09 57.1 7.4 96 65-188 11-106 (164)
172 2dba_A Smooth muscle cell asso 97.8 0.00039 1.3E-08 50.6 12.3 103 160-289 27-133 (148)
173 3k9i_A BH0479 protein; putativ 97.8 2.2E-05 7.6E-10 55.4 5.1 84 42-126 2-87 (117)
174 2xev_A YBGF; tetratricopeptide 97.8 0.00019 6.5E-09 51.1 10.0 89 35-126 7-102 (129)
175 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00014 4.7E-09 64.8 11.0 115 32-149 270-404 (457)
176 3n71_A Histone lysine methyltr 97.7 8.7E-05 3E-09 66.3 8.2 129 37-188 316-462 (490)
177 3q7a_A Farnesyltransferase alp 97.7 0.0041 1.4E-07 52.6 17.8 168 146-339 105-329 (349)
178 2uy1_A Cleavage stimulation fa 97.7 0.0059 2E-07 54.7 19.7 290 33-339 18-411 (493)
179 1wao_1 Serine/threonine protei 97.7 3E-05 1E-09 69.4 4.6 113 72-185 13-134 (477)
180 2xev_A YBGF; tetratricopeptide 97.6 0.00065 2.2E-08 48.2 10.7 98 165-289 6-110 (129)
181 1ihg_A Cyclophilin 40; ppiase 97.6 0.00019 6.6E-09 61.8 8.9 119 32-151 225-362 (370)
182 2l6j_A TPR repeat-containing p 97.6 5.7E-05 2E-09 52.3 4.3 58 68-126 7-64 (111)
183 3k9i_A BH0479 protein; putativ 97.6 2.4E-05 8.2E-10 55.2 2.2 85 77-188 2-88 (117)
184 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00017 5.9E-09 61.4 7.6 138 32-188 181-326 (338)
185 3n71_A Histone lysine methyltr 97.6 6E-05 2.1E-09 67.3 4.8 131 75-228 319-465 (490)
186 3rkv_A Putative peptidylprolyl 97.5 0.00045 1.6E-08 51.6 8.5 94 32-126 13-123 (162)
187 1kt0_A FKBP51, 51 kDa FK506-bi 97.5 0.00032 1.1E-08 62.4 8.4 132 66-218 269-405 (457)
188 3rkv_A Putative peptidylprolyl 97.4 0.00095 3.3E-08 49.8 9.1 105 162-289 12-131 (162)
189 2if4_A ATFKBP42; FKBP-like, al 97.4 0.0004 1.4E-08 59.1 7.3 144 68-229 182-330 (338)
190 2l6j_A TPR repeat-containing p 97.4 0.00016 5.6E-09 49.9 4.0 91 32-125 6-103 (111)
191 2uy1_A Cleavage stimulation fa 97.4 0.057 1.9E-06 48.3 21.5 171 82-279 196-380 (493)
192 2kat_A Uncharacterized protein 97.3 0.00095 3.2E-08 46.5 7.9 78 47-126 2-79 (115)
193 1ihg_A Cyclophilin 40; ppiase 97.3 0.00035 1.2E-08 60.2 6.1 133 68-219 226-362 (370)
194 2hr2_A Hypothetical protein; a 97.3 0.0015 5.1E-08 48.3 8.3 93 32-126 13-128 (159)
195 3dss_A Geranylgeranyl transfer 97.2 0.01 3.5E-07 49.8 14.3 141 46-188 90-265 (331)
196 1na3_A Designed protein CTPR2; 97.2 0.002 6.9E-08 42.3 8.2 79 32-112 11-89 (91)
197 3dss_A Geranylgeranyl transfer 97.1 0.045 1.5E-06 45.9 16.7 227 39-289 38-309 (331)
198 1klx_A Cysteine rich protein B 97.1 0.0016 5.5E-08 47.2 6.9 113 42-194 7-128 (138)
199 1klx_A Cysteine rich protein B 97.0 0.00088 3E-08 48.6 5.1 114 78-230 8-129 (138)
200 3mkq_A Coatomer beta'-subunit; 97.0 0.0048 1.6E-07 58.9 11.7 154 75-280 609-763 (814)
201 2kat_A Uncharacterized protein 97.0 0.0015 5.1E-08 45.4 6.1 78 83-188 3-80 (115)
202 2hr2_A Hypothetical protein; a 97.0 0.006 2E-07 45.1 9.2 101 164-281 14-130 (159)
203 3ma5_A Tetratricopeptide repea 97.0 0.003 1E-07 42.7 7.1 60 66-126 8-67 (100)
204 1na3_A Designed protein CTPR2; 96.9 0.0026 8.9E-08 41.7 6.5 61 65-126 9-69 (91)
205 1dce_A Protein (RAB geranylger 96.8 0.031 1E-06 51.0 14.4 168 42-216 41-244 (567)
206 1zu2_A Mitochondrial import re 96.7 0.0038 1.3E-07 46.0 6.3 72 41-114 13-94 (158)
207 3ma5_A Tetratricopeptide repea 96.6 0.0084 2.9E-07 40.4 7.1 81 32-113 9-90 (100)
208 3qww_A SET and MYND domain-con 96.4 0.0028 9.7E-08 55.6 4.5 64 163-226 342-410 (433)
209 3qww_A SET and MYND domain-con 96.4 0.0066 2.2E-07 53.2 6.7 88 78-188 311-409 (433)
210 1zu2_A Mitochondrial import re 96.3 0.0027 9.3E-08 46.8 3.5 111 76-211 13-137 (158)
211 3qwp_A SET and MYND domain-con 96.3 0.011 3.8E-07 51.8 8.1 90 36-125 293-396 (429)
212 3mkq_A Coatomer beta'-subunit; 96.3 0.024 8.4E-07 54.0 10.8 95 111-223 610-706 (814)
213 3qwp_A SET and MYND domain-con 96.2 0.0046 1.6E-07 54.3 5.0 93 73-188 295-398 (429)
214 1dce_A Protein (RAB geranylger 96.2 0.053 1.8E-06 49.4 12.1 146 32-179 65-244 (567)
215 2kc7_A BFR218_protein; tetratr 96.2 0.015 5.2E-07 38.8 6.4 58 37-95 7-65 (99)
216 3lvg_A Clathrin heavy chain 1; 96.0 0.0011 3.7E-08 57.8 0.1 245 32-332 56-324 (624)
217 1wy6_A Hypothetical protein ST 96.0 0.24 8.2E-06 35.1 11.6 47 40-89 17-63 (172)
218 2kc7_A BFR218_protein; tetratr 96.0 0.019 6.4E-07 38.3 6.4 55 71-126 6-61 (99)
219 3mkq_B Coatomer subunit alpha; 95.9 0.079 2.7E-06 39.6 9.7 49 108-157 13-61 (177)
220 3ly7_A Transcriptional activat 95.7 0.053 1.8E-06 46.0 8.7 136 61-202 190-347 (372)
221 3lvg_A Clathrin heavy chain 1; 95.5 0.007 2.4E-07 52.8 2.8 222 99-338 53-288 (624)
222 3mkq_B Coatomer subunit alpha; 95.2 0.67 2.3E-05 34.6 12.7 129 39-188 14-142 (177)
223 1wy6_A Hypothetical protein ST 94.6 0.82 2.8E-05 32.4 13.6 146 68-230 8-157 (172)
224 3ly7_A Transcriptional activat 94.4 0.26 9E-06 41.8 9.5 145 14-165 188-347 (372)
225 3bee_A Putative YFRE protein; 94.3 0.24 8.1E-06 32.7 7.4 66 197-283 5-73 (93)
226 2v5f_A Prolyl 4-hydroxylase su 94.0 0.12 4.1E-06 34.9 5.6 64 63-126 3-72 (104)
227 4gns_B Protein CSD3, chitin bi 93.9 0.12 4E-06 48.4 6.9 124 34-157 252-398 (754)
228 3bee_A Putative YFRE protein; 93.6 0.22 7.5E-06 32.9 6.2 45 81-126 25-69 (93)
229 2v5f_A Prolyl 4-hydroxylase su 93.5 0.26 9E-06 33.2 6.7 66 33-100 8-79 (104)
230 3lpz_A GET4 (YOR164C homolog); 93.4 3 0.0001 34.8 15.7 131 32-177 37-183 (336)
231 1pc2_A Mitochondria fission pr 93.4 0.21 7.1E-06 36.4 6.2 80 45-126 13-97 (152)
232 2wpv_A GET4, UPF0363 protein Y 93.3 2.7 9.1E-05 34.8 13.4 128 32-174 35-178 (312)
233 4b4t_P 26S proteasome regulato 92.9 4.5 0.00015 35.5 16.2 162 165-342 141-325 (445)
234 1wdy_A 2-5A-dependent ribonucl 92.0 4 0.00014 32.7 15.4 179 35-230 7-211 (285)
235 1v54_E Cytochrome C oxidase po 90.8 0.82 2.8E-05 30.4 5.9 62 46-108 26-87 (109)
236 4fhn_B Nucleoporin NUP120; pro 90.8 2.1 7.2E-05 42.7 11.8 148 135-306 817-989 (1139)
237 1pc2_A Mitochondria fission pr 89.8 1.1 3.9E-05 32.5 6.7 88 178-289 15-105 (152)
238 3u64_A Protein TP_0956; tetrat 89.6 5 0.00017 32.7 11.0 123 144-290 135-279 (301)
239 2uwj_G Type III export protein 89.2 3.4 0.00012 27.3 8.3 50 137-188 46-95 (115)
240 4gns_B Protein CSD3, chitin bi 88.6 2.2 7.5E-05 40.0 9.4 119 69-187 252-397 (754)
241 2ff4_A Probable regulatory pro 88.1 1.2 4.3E-05 38.2 7.0 70 32-102 173-247 (388)
242 3u64_A Protein TP_0956; tetrat 88.0 2.2 7.4E-05 34.8 7.8 66 32-97 201-272 (301)
243 4b4t_P 26S proteasome regulato 87.5 11 0.00037 33.0 12.8 154 32-188 58-245 (445)
244 4h7y_A Dual specificity protei 87.3 3.7 0.00013 29.7 7.7 93 32-126 15-120 (161)
245 2ff4_A Probable regulatory pro 87.0 1.3 4.5E-05 38.1 6.5 42 250-291 202-248 (388)
246 2p58_C Putative type III secre 86.4 5.4 0.00018 26.4 8.5 50 137-188 47-96 (116)
247 1nzn_A CGI-135 protein, fissio 86.2 1.9 6.5E-05 30.1 5.7 82 43-126 14-100 (126)
248 2y69_E Cytochrome C oxidase su 86.0 2.3 8E-05 29.9 5.9 59 48-107 71-129 (152)
249 4fhn_B Nucleoporin NUP120; pro 84.9 29 0.00098 34.6 15.6 123 103-226 815-966 (1139)
250 3ffl_A Anaphase-promoting comp 84.7 8.3 0.00028 28.4 8.7 133 10-158 8-150 (167)
251 1v54_E Cytochrome C oxidase po 84.3 4.5 0.00015 26.9 6.4 49 178-228 27-75 (109)
252 2wpv_A GET4, UPF0363 protein Y 82.9 19 0.00064 29.7 11.4 26 311-336 133-158 (312)
253 3ffl_A Anaphase-promoting comp 82.8 5.9 0.0002 29.1 7.3 121 59-188 12-149 (167)
254 4h7y_A Dual specificity protei 81.4 13 0.00045 26.9 9.9 113 159-296 11-136 (161)
255 3hra_A Ankyrin repeat family p 80.9 15 0.00052 27.4 10.7 154 38-199 10-174 (201)
256 3eiq_C Programmed cell death p 80.7 3.9 0.00013 34.5 6.5 27 32-58 56-82 (358)
257 2zu6_B Programmed cell death p 80.7 7 0.00024 32.2 8.0 64 164-230 169-234 (307)
258 1nzn_A CGI-135 protein, fissio 79.9 5.3 0.00018 27.9 6.0 90 71-188 7-101 (126)
259 2uwj_G Type III export protein 78.5 12 0.00041 24.8 6.8 54 236-292 53-106 (115)
260 2p58_C Putative type III secre 77.6 13 0.00044 24.7 6.7 55 235-292 53-107 (116)
261 2y69_E Cytochrome C oxidase su 77.3 7.9 0.00027 27.3 6.0 47 179-227 71-117 (152)
262 4b4t_R RPN7, 26S proteasome re 75.9 14 0.00048 32.1 9.0 30 252-283 346-375 (429)
263 3eu9_A Huntingtin-interacting 75.5 25 0.00085 26.9 10.8 13 110-122 116-128 (240)
264 3lpz_A GET4 (YOR164C homolog); 74.9 35 0.0012 28.4 15.6 81 251-339 134-214 (336)
265 1k1a_A B-cell lymphoma 3-encod 74.4 27 0.00093 26.8 12.0 86 36-126 12-102 (241)
266 3kea_A K1L; tropism, ANK repea 73.5 34 0.0012 27.5 12.4 75 76-155 39-117 (285)
267 3eu9_A Huntingtin-interacting 73.0 29 0.00099 26.5 12.0 108 40-156 16-132 (240)
268 3ltm_A Alpha-REP4; protein eng 72.5 28 0.00097 26.2 17.0 133 135-301 69-201 (211)
269 2d2s_A Exocyst complex compone 71.7 34 0.0012 26.8 10.7 90 34-126 22-117 (235)
270 4b4t_R RPN7, 26S proteasome re 71.2 51 0.0017 28.5 12.4 61 163-225 133-195 (429)
271 1zbp_A Hypothetical protein VP 70.6 7.6 0.00026 31.1 5.4 26 163-188 100-127 (273)
272 4b4t_S RPN3, 26S proteasome re 69.6 50 0.0017 29.4 10.7 177 32-229 233-431 (523)
273 3esl_A Checkpoint serine/threo 68.8 32 0.0011 26.2 8.2 54 266-342 92-145 (202)
274 3kea_A K1L; tropism, ANK repea 67.7 46 0.0016 26.7 12.0 142 37-186 35-183 (285)
275 2fe3_A Peroxide operon regulat 67.6 17 0.00058 25.9 6.4 42 38-79 29-70 (145)
276 3o48_A Mitochondria fission 1 67.4 23 0.00078 24.9 6.6 65 62-126 37-104 (134)
277 3jxi_A Vanilloid receptor-rela 66.4 44 0.0015 26.0 10.6 136 36-172 8-185 (260)
278 3jxi_A Vanilloid receptor-rela 65.7 26 0.0009 27.4 7.9 194 72-282 9-251 (260)
279 3b7b_A Euchromatic histone-lys 64.0 46 0.0016 25.4 11.5 207 37-282 15-236 (237)
280 3aji_A 26S proteasome non-ATPa 63.9 46 0.0016 25.3 10.1 138 36-180 9-155 (231)
281 2xig_A Ferric uptake regulatio 63.9 18 0.00062 26.0 5.9 63 55-118 17-79 (150)
282 2fe3_A Peroxide operon regulat 63.6 21 0.00073 25.4 6.3 65 53-118 10-74 (145)
283 3eyy_A Putative iron uptake re 63.5 13 0.00043 26.6 5.0 42 37-79 25-66 (145)
284 2xig_A Ferric uptake regulatio 62.3 20 0.00069 25.8 5.9 57 89-146 16-77 (150)
285 2zu6_B Programmed cell death p 62.2 64 0.0022 26.5 11.9 24 257-280 170-193 (307)
286 3esl_A Checkpoint serine/threo 62.1 23 0.00078 27.0 6.3 56 214-288 95-150 (202)
287 4ets_A Ferric uptake regulatio 61.9 18 0.00061 26.5 5.6 72 47-119 14-88 (162)
288 2fu4_A Ferric uptake regulatio 61.8 23 0.00079 22.1 5.6 63 54-117 6-69 (83)
289 3txn_A 26S proteasome regulato 61.8 76 0.0026 27.1 14.7 158 106-335 25-204 (394)
290 1mzb_A Ferric uptake regulatio 60.7 19 0.00065 25.3 5.5 32 45-76 33-64 (136)
291 2w57_A Ferric uptake regulatio 60.4 20 0.00068 25.8 5.6 35 45-79 32-66 (150)
292 2w57_A Ferric uptake regulatio 60.1 23 0.00077 25.5 5.9 65 53-118 5-70 (150)
293 1zbp_A Hypothetical protein VP 60.0 66 0.0022 25.8 11.0 46 76-122 8-53 (273)
294 1mzb_A Ferric uptake regulatio 59.8 21 0.00071 25.1 5.5 64 54-118 7-71 (136)
295 4a1g_A Mitotic checkpoint seri 58.0 22 0.00074 25.7 5.3 55 215-288 82-136 (152)
296 3eyy_A Putative iron uptake re 58.0 17 0.00059 25.9 4.9 65 52-118 6-70 (145)
297 4ets_A Ferric uptake regulatio 57.6 35 0.0012 24.9 6.6 60 87-147 20-86 (162)
298 1y8m_A FIS1; mitochondria, unk 57.2 50 0.0017 23.5 7.5 65 62-126 36-103 (144)
299 2fu4_A Ferric uptake regulatio 57.1 31 0.0011 21.5 5.6 64 8-82 5-69 (83)
300 3ltj_A Alpharep-4; protein eng 56.1 59 0.002 24.1 16.1 119 64-187 58-177 (201)
301 2nsz_A Programmed cell death p 55.7 29 0.00099 24.2 5.6 61 134-196 11-76 (129)
302 3mwm_A ZUR, putative metal upt 54.6 14 0.00048 26.2 3.9 45 36-80 19-63 (139)
303 1wdy_A 2-5A-dependent ribonucl 54.0 77 0.0026 24.8 11.8 105 70-180 7-121 (285)
304 2wvi_A Mitotic checkpoint seri 53.7 33 0.0011 25.1 5.8 42 84-125 79-121 (164)
305 1ug3_A EIF4GI, eukaryotic prot 53.6 47 0.0016 27.7 7.6 62 33-95 14-76 (339)
306 4a1g_A Mitotic checkpoint seri 53.3 40 0.0014 24.3 6.0 21 75-95 111-131 (152)
307 4gq2_M Nucleoporin NUP120; bet 51.9 83 0.0028 30.6 9.9 29 254-282 898-926 (950)
308 2nsz_A Programmed cell death p 50.6 16 0.00054 25.6 3.6 65 33-98 10-76 (129)
309 3ltj_A Alpharep-4; protein eng 49.8 76 0.0026 23.5 17.2 130 136-299 65-194 (201)
310 2wvi_A Mitotic checkpoint seri 49.3 56 0.0019 23.9 6.4 24 75-98 106-129 (164)
311 2pnn_A Transient receptor pote 48.9 95 0.0032 24.3 9.9 118 36-154 16-169 (273)
312 3ltm_A Alpha-REP4; protein eng 48.8 81 0.0028 23.5 16.0 79 98-176 93-172 (211)
313 2cos_A Serine/threonine protei 48.3 35 0.0012 19.4 3.9 39 4-57 9-49 (54)
314 1k1a_A B-cell lymphoma 3-encod 47.6 90 0.0031 23.7 13.5 85 72-157 13-103 (241)
315 1ug3_A EIF4GI, eukaryotic prot 47.4 1.2E+02 0.0042 25.2 9.2 19 259-277 147-165 (339)
316 2d2s_A Exocyst complex compone 47.1 70 0.0024 25.0 7.1 91 167-280 24-118 (235)
317 2etb_A Transient receptor pote 46.0 1E+02 0.0035 23.8 8.6 55 36-90 5-68 (256)
318 4b4t_S RPN3, 26S proteasome re 46.0 1.6E+02 0.0056 26.2 12.0 56 68-126 234-296 (523)
319 2ion_A PDCD4, programmed cell 45.9 20 0.00069 25.9 3.6 65 33-98 12-78 (152)
320 2ion_A PDCD4, programmed cell 45.7 28 0.00095 25.2 4.3 61 134-196 13-78 (152)
321 4aez_C MAD3, mitotic spindle c 45.3 36 0.0012 26.4 5.1 55 215-288 131-185 (223)
322 1yii_A Annexin A5, annexin V, 45.3 1.3E+02 0.0044 24.8 11.0 165 32-205 75-272 (320)
323 4ady_A RPN2, 26S proteasome re 45.3 65 0.0022 31.2 7.7 173 138-317 498-691 (963)
324 3ygs_P Procaspase 9; apoptosis 44.5 26 0.00089 23.0 3.7 37 144-180 51-87 (97)
325 3o48_A Mitochondria fission 1 44.5 23 0.00079 24.9 3.5 54 44-99 57-110 (134)
326 2r9g_A AAA ATPase, central reg 44.3 94 0.0032 23.6 7.0 56 41-97 25-85 (204)
327 1y8m_A FIS1; mitochondria, unk 43.8 42 0.0014 23.9 4.8 54 44-99 56-109 (144)
328 1oai_A Nuclear RNA export fact 43.4 19 0.00064 21.2 2.5 24 43-66 33-57 (59)
329 4aez_C MAD3, mitotic spindle c 43.3 54 0.0018 25.4 5.7 60 81-140 130-191 (223)
330 2b7e_A PRE-mRNA processing pro 42.0 39 0.0013 19.8 3.6 29 82-110 3-31 (59)
331 2o03_A Probable zinc uptake re 41.0 37 0.0013 23.6 4.3 46 36-81 16-61 (131)
332 4ady_A RPN2, 26S proteasome re 40.7 2.7E+02 0.0091 27.2 14.0 48 76-126 501-550 (963)
333 1bd8_A P19INK4D CDK4/6 inhibit 39.9 92 0.0032 21.6 8.7 113 35-155 4-123 (156)
334 1n00_A Annexin GH1; membrane-b 39.6 1.6E+02 0.0054 24.3 11.5 107 32-143 77-201 (321)
335 2hyv_A Annexin A2; calcium-bin 39.2 1.6E+02 0.0054 24.1 12.7 149 48-205 79-261 (308)
336 3hra_A Ankyrin repeat family p 38.6 1.1E+02 0.0039 22.3 8.2 32 256-288 141-173 (201)
337 1wty_A Hypothetical protein TT 37.3 96 0.0033 21.0 6.6 75 45-126 3-78 (119)
338 2etb_A Transient receptor pote 37.1 1.4E+02 0.0048 22.9 10.9 83 73-157 7-114 (256)
339 1qsa_A Protein (soluble lytic 35.3 2.6E+02 0.009 25.6 21.4 58 259-341 291-348 (618)
340 3ygs_P Procaspase 9; apoptosis 35.1 64 0.0022 21.0 4.4 39 236-274 51-89 (97)
341 3l6a_A Eukaryotic translation 34.6 2.1E+02 0.0071 24.1 9.1 24 256-279 141-164 (364)
342 3ctd_A Putative ATPase, AAA fa 33.2 1.5E+02 0.0053 22.6 6.7 63 35-97 37-107 (213)
343 1dm5_A Annexin XII E105K mutan 32.4 2.1E+02 0.0071 23.5 11.3 24 179-206 248-271 (315)
344 2o03_A Probable zinc uptake re 32.1 50 0.0017 22.9 3.8 49 258-306 15-63 (131)
345 1hm6_A Annexin 1; phospholipid 31.8 2.3E+02 0.0077 23.7 11.4 151 47-205 46-225 (346)
346 4gq2_M Nucleoporin NUP120; bet 30.8 2.8E+02 0.0095 27.0 9.9 83 106-188 816-924 (950)
347 3eiq_C Programmed cell death p 30.3 2.4E+02 0.0084 23.6 14.3 69 103-172 57-130 (358)
348 3bge_A Predicted ATPase; struc 29.0 1.3E+02 0.0045 22.8 5.6 39 41-79 18-56 (201)
349 2p1h_A APAF-1, apoptotic prote 28.9 1.1E+02 0.0037 19.6 4.8 35 236-270 50-84 (94)
350 1s6c_A KV4 potassium channel-i 28.7 1.6E+02 0.0055 21.1 8.2 20 199-218 157-176 (183)
351 2f6m_A Suppressor protein STP2 28.6 77 0.0026 19.0 3.5 45 33-78 5-49 (65)
352 3kae_A CDC27, possible protein 27.6 1.9E+02 0.0064 21.6 6.0 66 262-337 71-139 (242)
353 2yru_A Steroid receptor RNA ac 25.9 66 0.0023 22.0 3.3 44 51-94 47-90 (118)
354 3bu8_A Telomeric repeat-bindin 25.8 2.3E+02 0.0078 21.8 6.5 55 269-340 88-142 (235)
355 1wgl_A TOLL-interacting protei 25.7 91 0.0031 18.2 3.5 25 264-288 34-58 (59)
356 3ljn_A Hypothetical protein; a 25.3 2.8E+02 0.0096 22.7 10.8 169 5-186 66-266 (364)
357 2keb_A DNA polymerase subunit 25.2 1.5E+02 0.0051 19.5 4.8 32 48-79 27-58 (101)
358 3mwm_A ZUR, putative metal upt 25.1 90 0.0031 21.9 4.1 50 165-216 17-66 (139)
359 3qye_A TBC1 domain family memb 25.0 2.2E+02 0.0075 23.4 7.2 141 32-176 151-309 (331)
360 2qq8_A TBC1 domain family memb 24.4 1.1E+02 0.0038 25.3 5.2 162 21-188 135-325 (334)
361 1bpo_A Protein (clathrin); cla 24.0 2.4E+02 0.0081 24.8 7.0 83 37-121 368-450 (494)
362 1otr_A Protein CUE2; protein-p 23.4 1.1E+02 0.0036 17.1 4.5 14 174-187 31-44 (49)
363 3f3f_C Nucleoporin NUP85; stru 23.2 1.9E+02 0.0066 26.0 6.6 70 47-118 498-567 (570)
364 1qsa_A Protein (soluble lytic 23.2 4.3E+02 0.015 24.1 18.3 73 267-340 228-313 (618)
365 1zl8_A LIN-7; heterodimer, alp 23.0 1.1E+02 0.0037 17.1 3.3 23 267-289 7-29 (53)
366 4g8k_A 2-5A-dependent ribonucl 22.9 3E+02 0.01 22.2 18.5 112 34-155 26-147 (337)
367 3bu8_A Telomeric repeat-bindin 22.9 2.6E+02 0.009 21.5 8.2 33 32-64 19-53 (235)
368 2rg8_A Programmed cell death p 22.0 44 0.0015 24.5 2.0 25 33-57 13-37 (165)
369 2ko4_A Mediator of RNA polymer 21.5 1.4E+02 0.0049 18.6 3.8 38 243-280 24-63 (81)
370 1wty_A Hypothetical protein TT 21.2 2E+02 0.0067 19.4 6.1 28 64-92 52-79 (119)
371 3cqc_A Nuclear pore complex pr 20.8 71 0.0024 25.6 3.1 26 315-340 37-62 (270)
372 1oy3_D Transcription factor in 20.8 2.9E+02 0.01 21.3 8.4 83 37-124 13-99 (282)
373 3cqc_A Nuclear pore complex pr 20.7 1.1E+02 0.0037 24.5 4.2 28 32-59 36-63 (270)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=7.3e-35 Score=261.72 Aligned_cols=205 Identities=15% Similarity=0.108 Sum_probs=114.8
Q ss_pred hHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCC---
Q 038758 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD--- 80 (354)
Q Consensus 4 a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~--- 80 (354)
+..+...+.+.+..+++.. .++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+.
T Consensus 9 ~e~L~~~~~~k~~~~spe~---------~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~ 79 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEA---------LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATE 79 (501)
T ss_dssp ---------------CHHH---------HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSS
T ss_pred HHHHHHHHHHhcccCCCHH---------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhh
Confidence 3344555555555555442 4555666666666666666666666666666666666666666665443
Q ss_pred ------hhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhc
Q 038758 81 ------YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFS 154 (354)
Q Consensus 81 ------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 154 (354)
++.|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|....
T Consensus 80 ~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g------------------------ 135 (501)
T 4g26_A 80 SSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFG------------------------ 135 (501)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT------------------------
T ss_pred hhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------------------------
Confidence 45566666666666666666666666666666666666665555542111
Q ss_pred cCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccc
Q 038758 155 KIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA 234 (354)
Q Consensus 155 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 234 (354)
..||..|||++|.+|++.|++++|.++|++|. ..|+.||..||+++|.+|++.|+.++|.+++++|.+.+.
T Consensus 136 --~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~--~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~----- 206 (501)
T 4g26_A 136 --IQPRLRSYGPALFGFCRKGDADKAYEVDAHMV--ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVR----- 206 (501)
T ss_dssp --CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-----
T ss_pred --CCCccceehHHHHHHHHCCCHHHHHHHHHHHH--hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCC-----
Confidence 13566666666666666666666666666665 556666666666666666666666666666666665555
Q ss_pred cchhHHHHHHhcccCCCCcchHHHHHHHHHh
Q 038758 235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVR 265 (354)
Q Consensus 235 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 265 (354)
.|+..||+.++..|+.
T Consensus 207 ---------------~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 207 ---------------QVSKSTFDMIEEWFKS 222 (501)
T ss_dssp ---------------SBCHHHHHHHHHHHHS
T ss_pred ---------------CcCHHHHHHHHHHHhc
Confidence 5556666665555554
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.5e-33 Score=253.30 Aligned_cols=214 Identities=10% Similarity=0.032 Sum_probs=176.3
Q ss_pred hHHHHHHHHHHhCCCcCCcc-cHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHh
Q 038758 47 EEIVNLFYLMIDKGVRPDHF-VCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEE 125 (354)
Q Consensus 47 ~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 125 (354)
..+..+.+++.++++.+... .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 34566777888887665543 58899999999999999999999999999999999999999999988765332
Q ss_pred hccccchhhHHHHHHHhcCchhHHHHHhccCC----CCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchH
Q 038758 126 MDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK----QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISL 201 (354)
Q Consensus 126 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~ 201 (354)
.+.+++++|.++|++|. .||..|||+||.+|++.|++++|.++|++|. ..|+.||..||
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~--~~g~~Pd~~ty 143 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMK--AFGIQPRLRSY 143 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HTTCCCCHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HcCCCCcccee
Confidence 12334455556665554 4899999999999999999999999999999 99999999999
Q ss_pred HHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038758 202 SGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281 (354)
Q Consensus 202 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (354)
+.+|.+|++.|++++|.++|+.|.+.|+ .||..||++||.+|++.|+.++|.+++++|.+
T Consensus 144 n~lI~~~~~~g~~~~A~~l~~~M~~~G~--------------------~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 144 GPALFGFCRKGDADKAYEVDAHMVESEV--------------------VPEEPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTC--------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHhcCC--------------------CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 99999999999999999999999999999999
Q ss_pred cCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCC
Q 038758 282 ANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGA 327 (354)
Q Consensus 282 ~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 327 (354)
.|..|+..| |+.++..|+..+.
T Consensus 204 ~g~~ps~~T------------------------~~~l~~~F~s~~a 225 (501)
T 4g26_A 204 LVRQVSKST------------------------FDMIEEWFKSEVA 225 (501)
T ss_dssp HTSSBCHHH------------------------HHHHHHHHHSHHH
T ss_pred hCCCcCHHH------------------------HHHHHHHHhcCcc
Confidence 999999988 8889999987543
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=6e-30 Score=237.32 Aligned_cols=334 Identities=11% Similarity=0.020 Sum_probs=217.5
Q ss_pred hhhHHHHHHHHHhccccchhhhhhHhhhhh-----------------------hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038758 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFC-----------------------NWTSMMGMYNVLGYYEEIVNLFYLMID 58 (354)
Q Consensus 2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~-----------------------~y~~li~~~~~~~~~~~a~~~~~~m~~ 58 (354)
++|..+++.|.+ ..|+..++..+...|. +|+.++..|.+.|++++|.++|+++..
T Consensus 101 ~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 178 (597)
T 2xpi_A 101 KCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNP 178 (597)
T ss_dssp HHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCT
T ss_pred hHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence 467777888773 4577777777777776 788888888888988888888885322
Q ss_pred C---------------CCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhcc---------------------------
Q 038758 59 K---------------GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKF--------------------------- 96 (354)
Q Consensus 59 ~---------------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--------------------------- 96 (354)
. |.+++..+|+.++.+|.+.|++++|.++|+.|.+.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l 258 (597)
T 2xpi_A 179 FRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKL 258 (597)
T ss_dssp TC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHS
T ss_pred ccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhc
Confidence 1 2234567888888888888888888888888876531
Q ss_pred -------------------------------------------CCCceehhhHHHHHHhcCChhHHHHHHHhh----ccc
Q 038758 97 -------------------------------------------EGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQD 129 (354)
Q Consensus 97 -------------------------------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~ 129 (354)
+++..+++.++.+|.+.|++++|.++|+++ +.+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 338 (597)
T 2xpi_A 259 NYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYN 338 (597)
T ss_dssp CTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCccc
Confidence 134444445555555555555555555554 224
Q ss_pred cchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHH
Q 038758 130 FLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLA 206 (354)
Q Consensus 130 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~ 206 (354)
..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++..|.+.|++++|.++|+++. .. .+.+..+|+.+..
T Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~~~~l~~ 415 (597)
T 2xpi_A 339 LDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSS--TM-DPQFGPAWIGFAH 415 (597)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HH-CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH--Hh-CCCCHHHHHHHHH
Confidence 44555555555555555555555554432 245566666667777777777777777665 21 1223456667777
Q ss_pred HhhhhcCccccchhhhHhhhhcccccc----------ccchhHHHHHHhcccC---CCCcchHHHHHHHHHhcCCHHHHH
Q 038758 207 ACAQVKGVKLGKAIHGYVLRHHIHLST----------ACGFVICSCSVFNQLS---TRDVVVWNSIISAFVRSGQVVDAL 273 (354)
Q Consensus 207 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~ 273 (354)
++.+.|++++|..+++.+.+.+..... +.|++++|...|+++. +.+..+|+.++..|.+.|++++|.
T Consensus 416 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 495 (597)
T 2xpi_A 416 SFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAI 495 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHH
Confidence 777777777777777666655432222 6667777777776654 345666777777777777777777
Q ss_pred HHHHHHHHc----CcCCC--HhhHHHHHHHhhccCcccCc---------ccc-chhHHHHHHHHHHhcCChhHHHHHhhc
Q 038758 274 DLLRDVIVA----NVKPN--TVTIVSVLPACLKLAALPQG---------LGT-GSFVWNALIDMYGRCGAIQKSRKIFVL 337 (354)
Q Consensus 274 ~~~~~m~~~----g~~p~--~~t~~~li~~~~~~~~~~~~---------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 337 (354)
++|+++.+. +..|+ ..+|..+..+|.+.|++++| ..| +..+|..+..+|.+.|++++|.+.|++
T Consensus 496 ~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (597)
T 2xpi_A 496 NHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHE 575 (597)
T ss_dssp HHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 777777654 55666 56777777777777777665 223 566777777777777777777777777
Q ss_pred CCC
Q 038758 338 MPH 340 (354)
Q Consensus 338 m~~ 340 (354)
+.+
T Consensus 576 ~l~ 578 (597)
T 2xpi_A 576 SLA 578 (597)
T ss_dssp HHH
T ss_pred HHh
Confidence 665
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=7.2e-29 Score=230.08 Aligned_cols=314 Identities=10% Similarity=-0.013 Sum_probs=225.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|+.+++.+.+.|++++|..+|++|.. ..|+..++..+..+|.+.|++++|.++|+.+.. .+++..+++.++.+|.
T Consensus 86 ~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 86 YLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFCLV 161 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHHHHH
Confidence 566666666666666666666666663 345556666666666666666666666665542 2455556666666666
Q ss_pred hcCChhHHHHHHHhhccc--------------------cchhhHHHHHHHhcCchhHHHHHh------------------
Q 038758 112 KCGRMEITSGLFEEMDQD--------------------FLVNNSLIDFYAKCRYLKVSHCKF------------------ 153 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~~~~--------------------~~~~~~li~~~~~~~~~~~a~~~~------------------ 153 (354)
+.|++++|.++|+++.|+ ..+|+.++.+|.+.|++++|.+.|
T Consensus 162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 241 (597)
T 2xpi_A 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLV 241 (597)
T ss_dssp HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHH
Confidence 666666666666643221 345555555555555555555544
Q ss_pred ------------------------------------------------------ccCCC--CChhhhHHHHHHHHhCCCh
Q 038758 154 ------------------------------------------------------SKIKQ--KDLVSWNAMLAGYALGGFR 177 (354)
Q Consensus 154 ------------------------------------------------------~~~~~--~~~~~~~~li~~~~~~~~~ 177 (354)
+++.+ ++..+|+.++.+|.+.|++
T Consensus 242 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 321 (597)
T 2xpi_A 242 SNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRF 321 (597)
T ss_dssp HTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCH
T ss_pred HhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCH
Confidence 44443 5667788888888888888
Q ss_pred hHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc----------ccchhHHHHHHhcc
Q 038758 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST----------ACGFVICSCSVFNQ 247 (354)
Q Consensus 178 ~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~ 247 (354)
++|.++|+++. ..+ +.+..++..++.++.+.|+.++|..+++.+.+....... +.|++++|...|++
T Consensus 322 ~~A~~~~~~~~--~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 398 (597)
T 2xpi_A 322 IDVLAITTKIL--EID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSK 398 (597)
T ss_dssp HHHHHHHHHHH--HHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 88888888886 433 336777888888888888888888888888755433222 88999999999987
Q ss_pred cC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc----------cccchhH
Q 038758 248 LS---TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------LGTGSFV 314 (354)
Q Consensus 248 ~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~----------~~~~~~~ 314 (354)
+. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..+..+|.+.|+++++ .+.+..+
T Consensus 399 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 477 (597)
T 2xpi_A 399 SSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL 477 (597)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 64 4467799999999999999999999999998654 45778899999999999998887 3346888
Q ss_pred HHHHHHHHHhcCChhHHHHHhhcCCC--------CC--cccHHHhhhhc
Q 038758 315 WNALIDMYGRCGAIQKSRKIFVLMPH--------KN--LVSWNVMISVY 353 (354)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m~~--------~~--~~~~~~li~~~ 353 (354)
|+.++..|.+.|++++|.++|+++.+ |+ ..+|+.+..+|
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 99999999999999999999998853 44 56777776654
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.91 E-value=1.4e-22 Score=177.91 Aligned_cols=321 Identities=10% Similarity=0.019 Sum_probs=248.8
Q ss_pred hhhHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCCh
Q 038758 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY 81 (354)
Q Consensus 2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 81 (354)
++|.+.+..+.+. .|+... .+..+...+...|++++|...++...+.. +.+...|..+...+.+.|++
T Consensus 16 ~~A~~~~~~~~~~--~p~~~~---------~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 16 EAAERHCMQLWRQ--EPDNTG---------VLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHHHHHH--CTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHh--CCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 4566666666654 355443 34455666778888888888888877653 45667788888888888888
Q ss_pred hhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCC
Q 038758 82 RVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157 (354)
Q Consensus 82 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 157 (354)
++|.+.|+.+.+.. +.+...|..+..++.+.|++++|.+.|+++ +.+...+..+...+...|++++|.+.|+++.
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 88888888888753 444557888888888888888888888887 3344566677788888888888888888775
Q ss_pred C--C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhhcccccc
Q 038758 158 Q--K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST 233 (354)
Q Consensus 158 ~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 233 (354)
+ | +..+|+.+...+.+.|++++|.+.|+++. .. .|+ ...+..+...+...|++++|...+....+.......
T Consensus 163 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 238 (388)
T 1w3b_A 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV--TL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH--HH--CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHH
Confidence 3 3 45678888888888888888888888886 32 333 456777777888888888888888877766543222
Q ss_pred ----------ccchhHHHHHHhcccC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhc
Q 038758 234 ----------ACGFVICSCSVFNQLS---TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300 (354)
Q Consensus 234 ----------~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 300 (354)
..|++++|...|++.. +.+..+|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+..
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence 6788888888888764 3356789999999999999999999999998753 5577889999999999
Q ss_pred cCcccCc---------ccc-chhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 301 LAALPQG---------LGT-GSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 301 ~~~~~~~---------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
.|+++++ ..| +..++..+...|.+.|++++|.+.|+++.+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9998887 334 577899999999999999999999999877
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.90 E-value=4.1e-22 Score=174.92 Aligned_cols=308 Identities=11% Similarity=0.037 Sum_probs=256.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCcCCc-ccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCC
Q 038758 37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDH-FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR 115 (354)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 115 (354)
...+.+.|++++|.+.++++.+. .|+. ..+..+...+...|++++|...++...+.. +.+..+|..+..+|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 45677899999999999998876 4544 456666677889999999999999988765 6678899999999999999
Q ss_pred hhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CC-hhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 116 MEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KD-LVSWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 116 ~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
+++|.+.|+++ +.+...|..+..++.+.|++++|.+.|+++.+ |+ ...+..+...+...|++++|.+.|+++.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999988 33455789999999999999999999988764 54 4457778888899999999999999997
Q ss_pred hhhcCCCC-CcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc----------ccchhHHHHHHhcccC---CCCcc
Q 038758 189 MIQTDMQP-NTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST----------ACGFVICSCSVFNQLS---TRDVV 254 (354)
Q Consensus 189 ~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~---~~~~~ 254 (354)
.. .| +..++..+...+.+.|++++|...++.+.+....... ..|++++|...|++.. +.+..
T Consensus 163 --~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 238 (388)
T 1w3b_A 163 --ET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238 (388)
T ss_dssp --HH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred --Hh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHH
Confidence 32 34 4678889999999999999999999999887654332 7788999999888654 34578
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc----------cccchhHHHHHHHHHHh
Q 038758 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------LGTGSFVWNALIDMYGR 324 (354)
Q Consensus 255 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~----------~~~~~~~~~~li~~~~~ 324 (354)
+|..+...+.+.|++++|++.|+++.+.+ +.+..++..+...+.+.|+++++ .+.+..++..+...+.+
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 89999999999999999999999998753 23467888999999999999887 45578899999999999
Q ss_pred cCChhHHHHHhhcCCC--CC-cccHHHhhhh
Q 038758 325 CGAIQKSRKIFVLMPH--KN-LVSWNVMISV 352 (354)
Q Consensus 325 ~g~~~~A~~~~~~m~~--~~-~~~~~~li~~ 352 (354)
.|++++|.+.++++.+ |+ ..+|..+...
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 348 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 9999999999999987 54 4455555443
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=1.6e-20 Score=167.93 Aligned_cols=284 Identities=10% Similarity=0.042 Sum_probs=236.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|..+...+.+.|++++|..+|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+.+ +.+...+..+..+|.
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 78889999999999999999999998764 4567789999999999999999999999999876 566788999999999
Q ss_pred hcCChhHHHHHHHhh----cccc---chhhHH------------HHHHHhcCchhHHHHHhccCCC---CChhhhHHHHH
Q 038758 112 KCGRMEITSGLFEEM----DQDF---LVNNSL------------IDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLA 169 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~----~~~~---~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~ 169 (354)
+.|++++|.+.|+++ +.+. ..+..+ ...+.+.|++++|...|+++.+ .+...+..+..
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 185 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAE 185 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 999999999999998 2233 555555 4448999999999999998763 46778999999
Q ss_pred HHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccC
Q 038758 170 GYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLS 249 (354)
Q Consensus 170 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 249 (354)
.|.+.|++++|.+.|+++. .. .+.+..++..+...+...|++++|...++.+.+...
T Consensus 186 ~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-------------------- 242 (450)
T 2y4t_A 186 CFIKEGEPRKAISDLKAAS--KL-KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-------------------- 242 (450)
T ss_dssp HHHHTTCGGGGHHHHHHHH--HH-HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------
T ss_pred HHHHCCCHHHHHHHHHHHH--Hh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------
Confidence 9999999999999999996 32 234577899999999999999999999998886542
Q ss_pred CCCcchHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCcCCC-----HhhHHHHHHHhhccCcccCc-----
Q 038758 250 TRDVVVWNSI------------ISAFVRSGQVVDALDLLRDVIVANVKPN-----TVTIVSVLPACLKLAALPQG----- 307 (354)
Q Consensus 250 ~~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~t~~~li~~~~~~~~~~~~----- 307 (354)
.+...+..+ ...+.+.|++++|...|+++.+. .|+ ...+..+...+.+.|+++++
T Consensus 243 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 243 -DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 233334443 78888999999999999999864 455 34677888889999998887
Q ss_pred ----ccc-chhHHHHHHHHHHhcCChhHHHHHhhcCCC--CCc
Q 038758 308 ----LGT-GSFVWNALIDMYGRCGAIQKSRKIFVLMPH--KNL 343 (354)
Q Consensus 308 ----~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~ 343 (354)
..| +..+|..+..+|.+.|++++|.+.+++..+ |+.
T Consensus 320 ~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 362 (450)
T 2y4t_A 320 EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND 362 (450)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred HHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcch
Confidence 344 678899999999999999999999999876 554
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.3e-18 Score=157.88 Aligned_cols=322 Identities=10% Similarity=-0.075 Sum_probs=247.1
Q ss_pred hhhHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCCh
Q 038758 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY 81 (354)
Q Consensus 2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 81 (354)
++|...++.+++.. |++. +|..+..++.+.|++++|...++++.+.+ +.+...+..+...+...|++
T Consensus 23 ~~A~~~~~~al~~~--p~~~----------~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 89 (514)
T 2gw1_A 23 DDAIKYYNWALELK--EDPV----------FYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKF 89 (514)
T ss_dssp HHHHHHHHHHHHHC--CCHH----------HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhcC--ccHH----------HHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhH
Confidence 56788888888776 6655 67778888899999999999999998764 33456788888899999999
Q ss_pred hhHHHHHHHHHHhccCCCce------------------------------------------------------------
Q 038758 82 RVGKDVYDYMISIKFEGNAC------------------------------------------------------------ 101 (354)
Q Consensus 82 ~~a~~~~~~m~~~~~~~~~~------------------------------------------------------------ 101 (354)
++|.+.|+.+.+.+ +++..
T Consensus 90 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (514)
T 2gw1_A 90 ADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFF 168 (514)
T ss_dssp HHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHH
Confidence 99999999887664 22211
Q ss_pred -------------------ehhhHHHHHH---hcCChhHHHHHHHhhcc------------------ccchhhHHHHHHH
Q 038758 102 -------------------VKRPLLDLFI---KCGRMEITSGLFEEMDQ------------------DFLVNNSLIDFYA 141 (354)
Q Consensus 102 -------------------~~~~li~~~~---~~g~~~~a~~~~~~~~~------------------~~~~~~~li~~~~ 141 (354)
.+..+...+. +.|++++|...|+++.. +..++..+...+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (514)
T 2gw1_A 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF 248 (514)
T ss_dssp TTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH
Confidence 1122222233 27889999998887622 3456677888899
Q ss_pred hcCchhHHHHHhccCCC--CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccch
Q 038758 142 KCRYLKVSHCKFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219 (354)
Q Consensus 142 ~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 219 (354)
..|++++|...|++..+ |+...+..+...+...|++++|.+.++.+. .. .+.+...+..+...+...|++++|..
T Consensus 249 ~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~~~~l~~~~~~~~~~~~A~~ 325 (514)
T 2gw1_A 249 LKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKAL--KL-DSNNSSVYYHRGQMNFILQNYDQAGK 325 (514)
T ss_dssp HSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHH--TT-CTTCTHHHHHHHHHHHHTTCTTHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHh--hc-CcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999987753 456778888888999999999999999886 32 23356678888888899999999999
Q ss_pred hhhHhhhhcccccc----------ccchhHHHHHHhcccC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCc-C
Q 038758 220 IHGYVLRHHIHLST----------ACGFVICSCSVFNQLS---TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV-K 285 (354)
Q Consensus 220 ~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~ 285 (354)
.++...+....... ..|++++|...++... +.+...|..+...+.+.|++++|...++++.+..- .
T Consensus 326 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 326 DFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 99888876544322 7888999998888764 34667888889999999999999999999876421 1
Q ss_pred CC----HhhHHHHHHHhhc---cCcccCc---------ccc-chhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 286 PN----TVTIVSVLPACLK---LAALPQG---------LGT-GSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 286 p~----~~t~~~li~~~~~---~~~~~~~---------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
|+ ...+..+...+.. .|+++.+ ..| +..++..+...|.+.|++++|.+.|++..+
T Consensus 406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 22 2378888888888 8988887 333 567888999999999999999999998876
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.8e-18 Score=156.98 Aligned_cols=301 Identities=7% Similarity=-0.066 Sum_probs=243.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|...-..+.+.|++++|...|+++.+.+ |+...|..+..++...|++++|.+.++.+.+.+ +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 35566778899999999999999999875 788999999999999999999999999999875 566778999999999
Q ss_pred hcCChhHHHHHHHhh---cc-c----------------------------------------------------------
Q 038758 112 KCGRMEITSGLFEEM---DQ-D---------------------------------------------------------- 129 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~---~~-~---------------------------------------------------------- 129 (354)
+.|++++|...|+++ .| +
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 999999999999987 11 1
Q ss_pred ---------------------cchhhHHHHHHH---hcCchhHHHHHhccCCC----------------C-ChhhhHHHH
Q 038758 130 ---------------------FLVNNSLIDFYA---KCRYLKVSHCKFSKIKQ----------------K-DLVSWNAML 168 (354)
Q Consensus 130 ---------------------~~~~~~li~~~~---~~~~~~~a~~~~~~~~~----------------~-~~~~~~~li 168 (354)
...+..+...+. +.|++++|...|+++.+ | +..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 111122222233 37999999999987644 1 345678888
Q ss_pred HHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc----------ccchh
Q 038758 169 AGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST----------ACGFV 238 (354)
Q Consensus 169 ~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~ 238 (354)
..+...|++++|.+.|+.+. ... |+...+..+..++...|++++|...++...+....... ..|++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l--~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAI--ELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHH--HHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHCCCHHHHHHHHHHHH--hhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 99999999999999999997 433 33777888889999999999999999998876544332 78889
Q ss_pred HHHHHHhcccC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc--------
Q 038758 239 ICSCSVFNQLS---TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG-------- 307 (354)
Q Consensus 239 ~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~-------- 307 (354)
++|...|++.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+.+.+
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999998764 4466788888999999999999999999998653 33456788888899999998887
Q ss_pred -cccc-------hhHHHHHHHHHHh---cCChhHHHHHhhcCCC
Q 038758 308 -LGTG-------SFVWNALIDMYGR---CGAIQKSRKIFVLMPH 340 (354)
Q Consensus 308 -~~~~-------~~~~~~li~~~~~---~g~~~~A~~~~~~m~~ 340 (354)
..|+ ..++..+...+.+ .|++++|.+.+++..+
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 2222 2388899999999 9999999999998765
No 10
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.81 E-value=2e-20 Score=173.84 Aligned_cols=120 Identities=13% Similarity=-0.003 Sum_probs=107.0
Q ss_pred hhhhHHHHHHHHhCCChhHHHHHHHHHHhh-hcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhH
Q 038758 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMI-QTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVI 239 (354)
Q Consensus 161 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 239 (354)
..|||++|++|++.|++++|.++|++|.+. ..|+.||..|||++|.+||+.|++++|.++|+.|.+.|+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~---------- 196 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL---------- 196 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC----------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----------
Confidence 358999999999999999999999888621 358999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCCCcchHHHHHHHHHhcCC-HHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhc
Q 038758 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQ-VVDALDLLRDVIVANVKPNTVTIVSVLPACLK 300 (354)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 300 (354)
.||+.|||++|.++++.|+ .++|.++|++|.+.|+.||..||++++.++.+
T Consensus 197 ----------~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 197 ----------TPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp ----------CCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred ----------CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 9999999999999999998 47899999999999999999996655544443
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.80 E-value=2e-18 Score=154.22 Aligned_cols=277 Identities=6% Similarity=-0.060 Sum_probs=217.3
Q ss_pred HHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh-
Q 038758 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM- 126 (354)
Q Consensus 48 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~- 126 (354)
.+...+.+..... +.+...+..+...+.+.|++++|.++|+.+.+.. +.+..++..+..+|...|++++|...|+++
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444444332 4466678889999999999999999999999764 667889999999999999999999999998
Q ss_pred ---ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CC-h---hhhHHH------------HHHHHhCCChhHHHHHHH
Q 038758 127 ---DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KD-L---VSWNAM------------LAGYALGGFREEVTNLLD 185 (354)
Q Consensus 127 ---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~---~~~~~l------------i~~~~~~~~~~~a~~~~~ 185 (354)
+.+...+..+..+|.+.|++++|.+.|+++.+ |+ . ..+..+ ...+.+.|++++|.+.|+
T Consensus 88 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 88 QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44577889999999999999999999998865 33 2 455555 344889999999999999
Q ss_pred HHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHh
Q 038758 186 EMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVR 265 (354)
Q Consensus 186 ~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 265 (354)
++. .. .+.+...+..+..++.+.|++++|...++.+.+.. +.+..+|..+...|.+
T Consensus 168 ~~~--~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------------~~~~~~~~~l~~~~~~ 223 (450)
T 2y4t_A 168 KIL--EV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK---------------------NDNTEAFYKISTLYYQ 223 (450)
T ss_dssp HHH--HH-CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH---------------------CSCHHHHHHHHHHHHH
T ss_pred HHH--Hh-CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHH
Confidence 997 32 23456778899999999999999999999988775 4577899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCcCCCHhh-HHHH------------HHHhhccCcccCc---------cccc-----hhHHHHH
Q 038758 266 SGQVVDALDLLRDVIVANVKPNTVT-IVSV------------LPACLKLAALPQG---------LGTG-----SFVWNAL 318 (354)
Q Consensus 266 ~g~~~~a~~~~~~m~~~g~~p~~~t-~~~l------------i~~~~~~~~~~~~---------~~~~-----~~~~~~l 318 (354)
.|++++|+..|+++.+. .|+... +..+ ...+.+.|+++++ ..|+ ..+|..+
T Consensus 224 ~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l 301 (450)
T 2y4t_A 224 LGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERI 301 (450)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 99999999999999854 455443 3333 6788889998887 4454 4578899
Q ss_pred HHHHHhcCChhHHHHHhhcCCC--C-CcccHHHhhhh
Q 038758 319 IDMYGRCGAIQKSRKIFVLMPH--K-NLVSWNVMISV 352 (354)
Q Consensus 319 i~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~ 352 (354)
...+.+.|++++|.+.++++.+ | +...|..+...
T Consensus 302 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 302 CHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 9999999999999999999875 5 45566655443
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.79 E-value=3.3e-17 Score=141.49 Aligned_cols=283 Identities=10% Similarity=0.049 Sum_probs=225.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|..+-..+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+..++.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence 35667788899999999999999998864 3456778889999999999999999999999874 456788999999999
Q ss_pred hcCChhHHHHHHHhh---cc----ccchhhHH------------HHHHHhcCchhHHHHHhccCCC---CChhhhHHHHH
Q 038758 112 KCGRMEITSGLFEEM---DQ----DFLVNNSL------------IDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLA 169 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~---~~----~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~ 169 (354)
..|++++|...|++. .| +...+..+ ...+...|++++|...|++..+ .+...+..+..
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 162 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE 162 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 999999999999998 23 44455444 5788999999999999998753 46677888999
Q ss_pred HHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccC
Q 038758 170 GYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLS 249 (354)
Q Consensus 170 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 249 (354)
.+...|++++|.+.++... .. .+.+...+..+...+...|++++|...++...+...
T Consensus 163 ~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-------------------- 219 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAAS--KL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-------------------- 219 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHH--TT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------------------
T ss_pred HHHHCCCHHHHHHHHHHHH--Hh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--------------------
Confidence 9999999999999999996 32 344567888888999999999999999988887643
Q ss_pred CCCcchHH------------HHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHh-----hHHHHHHHhhccCcccCc-----
Q 038758 250 TRDVVVWN------------SIISAFVRSGQVVDALDLLRDVIVANVKPNTV-----TIVSVLPACLKLAALPQG----- 307 (354)
Q Consensus 250 ~~~~~~~~------------~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-----t~~~li~~~~~~~~~~~~----- 307 (354)
.+...+. .+...+.+.|++++|...+++..+.. |+.. .+..+...+...|+++.+
T Consensus 220 -~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 296 (359)
T 3ieg_A 220 -DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICS 296 (359)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 1222222 22556778888888888888887643 4322 234456677788887776
Q ss_pred ----ccc-chhHHHHHHHHHHhcCChhHHHHHhhcCCC--CC
Q 038758 308 ----LGT-GSFVWNALIDMYGRCGAIQKSRKIFVLMPH--KN 342 (354)
Q Consensus 308 ----~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~ 342 (354)
..| +..++..+...|.+.|++++|.+.|++..+ |+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 297 EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 334 677899999999999999999999999887 55
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=8.5e-17 Score=137.36 Aligned_cols=266 Identities=11% Similarity=0.014 Sum_probs=217.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.+..+...+...|++++|.++|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+...+..+...+.
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYL 101 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence 45677788889999999999999998865 4455667778888999999999999999999865 567788999999999
Q ss_pred hcC-ChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHH
Q 038758 112 KCG-RMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNL 183 (354)
Q Consensus 112 ~~g-~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~ 183 (354)
..| ++++|.+.|++. +.+...|..+...+...|++++|...|++..+ | +...+..+...+...|++++|.+.
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERF 181 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999 999999999987 44577889999999999999999999988764 3 456777889999999999999999
Q ss_pred HHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccC-CCCcchHHHHHHH
Q 038758 184 LDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLS-TRDVVVWNSIISA 262 (354)
Q Consensus 184 ~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~li~~ 262 (354)
+++.. .. .+.+...+..+...+...|++++|...++...+...... +... ..+..+|..+...
T Consensus 182 ~~~al--~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------------~~~~~~~~~~~~~~la~~ 245 (330)
T 3hym_B 182 FSQAL--SI-APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG-------------NEVTVDKWEPLLNNLGHV 245 (330)
T ss_dssp HHHHH--TT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS-------------CSCTTTTCCHHHHHHHHH
T ss_pred HHHHH--Hh-CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc-------------ccccccHHHHHHHHHHHH
Confidence 99996 32 234567788888999999999999999988776542100 0000 2245688999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 263 FVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 263 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
+.+.|++++|...+++..+.. |+. ..++..+...|.+.|++++|.+.+++..+
T Consensus 246 ~~~~g~~~~A~~~~~~a~~~~--~~~-----------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 246 CRKLKKYAEALDYHRQALVLI--PQN-----------------------ASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTC-----------------------SHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHhcCHHHHHHHHHHHHhhC--ccc-----------------------hHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 999999999999999998653 332 23477788888889999999999988877
No 14
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=1.1e-19 Score=169.00 Aligned_cols=144 Identities=10% Similarity=-0.011 Sum_probs=127.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh---CCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMID---KGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLD 108 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 108 (354)
|||+||++|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||+||.
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 999999999999999999999988764 58999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCh-hHHHHHHHhh-----ccccchhhHHHHHHHhcCchhHHHHHhccCCC-----CChhhhHHHHHHHHhCC
Q 038758 109 LFIKCGRM-EITSGLFEEM-----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-----KDLVSWNAMLAGYALGG 175 (354)
Q Consensus 109 ~~~~~g~~-~~a~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~ 175 (354)
++++.|+. ++|.++|++| .||..+|+.++.+..+.+-++.+.++...+.. |.+.+...|.+.|.+.+
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 99999985 7899999999 89999999999999888888887777666653 22455566666666655
No 15
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=3.8e-17 Score=141.96 Aligned_cols=268 Identities=7% Similarity=-0.082 Sum_probs=206.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|..+...+.+.|++++|...|+++.+.. +.+...|..+...+...|++++|.+.|+...+.. +.+..++..+..+|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 47788889999999999999999998865 4467778999999999999999999999998875 556788999999999
Q ss_pred hcCChhHHHHHHHhh----ccccc----------hhhHHHHHHHhcCchhHHHHHhccCCC--C---ChhhhHHHHHHHH
Q 038758 112 KCGRMEITSGLFEEM----DQDFL----------VNNSLIDFYAKCRYLKVSHCKFSKIKQ--K---DLVSWNAMLAGYA 172 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~----~~~~~----------~~~~li~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~~li~~~~ 172 (354)
..|++++|...|++. +.+.. .+..+...+.+.|++++|...|+++.+ | +..++..+...+.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 999999999999998 22222 233457889999999999999988764 3 5678888999999
Q ss_pred hCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCC
Q 038758 173 LGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRD 252 (354)
Q Consensus 173 ~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 252 (354)
+.|++++|.+.|++.. .. .+.+..++..+..++.+.|++++|...++...+.. +.+
T Consensus 225 ~~g~~~~A~~~~~~al--~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------------p~~ 280 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAAL--TV-RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ---------------------PGF 280 (365)
T ss_dssp HHTCHHHHHHHHHHHH--HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TTC
T ss_pred HCCCHHHHHHHHHHHH--Hh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------------CCc
Confidence 9999999999999986 32 23356788889999999999999999998887764 345
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHH
Q 038758 253 VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSR 332 (354)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 332 (354)
..+|..+...|.+.|++++|...|++..+.. |+...-.. ......+..+|..+..++...|+.+.+.
T Consensus 281 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 347 (365)
T 4eqf_A 281 IRSRYNLGISCINLGAYREAVSNFLTALSLQ--RKSRNQQQ-----------VPHPAISGNIWAALRIALSLMDQPELFQ 347 (365)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HCC-----------------------CHHHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccCCCcc-----------cchhhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 7788899999999999999999999987642 22110000 0000123566899999999999999999
Q ss_pred HHhhcC
Q 038758 333 KIFVLM 338 (354)
Q Consensus 333 ~~~~~m 338 (354)
++.++-
T Consensus 348 ~~~~~~ 353 (365)
T 4eqf_A 348 AANLGD 353 (365)
T ss_dssp HHHTTC
T ss_pred HHHHhh
Confidence 988763
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=1.2e-16 Score=138.66 Aligned_cols=267 Identities=9% Similarity=-0.031 Sum_probs=172.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+..++..+..+|.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 45566667777777777777777777653 3345566677777777777777777777777664 445667777777777
Q ss_pred hcCChhHHHHHHHhh----ccccchhhH---------------HHHHHHhcCchhHHHHHhccCCC--C---ChhhhHHH
Q 038758 112 KCGRMEITSGLFEEM----DQDFLVNNS---------------LIDFYAKCRYLKVSHCKFSKIKQ--K---DLVSWNAM 167 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~----~~~~~~~~~---------------li~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~~l 167 (354)
..|++++|.+.|++. +.+...+.. .+..+...|++++|...|+++.+ | +..++..+
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l 223 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence 777777777777776 222222221 13333377777777777766643 3 35566677
Q ss_pred HHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcc
Q 038758 168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQ 247 (354)
Q Consensus 168 i~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 247 (354)
...+.+.|++++|.+.|+++. .. .+.+...+..+...+.+.|++++|...++...+..
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al--~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------- 281 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAAL--SV-RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ------------------- 281 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH--HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHH--Hh-CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------
Confidence 777777777777777777765 22 12234566667777777777777777776666543
Q ss_pred cCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCC
Q 038758 248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGA 327 (354)
Q Consensus 248 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 327 (354)
+.+...|..+...|.+.|++++|...|++..+. .|+... ...........+|..+..+|.+.|+
T Consensus 282 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 282 --PGYIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRG------------PRGEGGAMSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp --TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------------------CCCCCHHHHHHHHHHHHHHTC
T ss_pred --CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCC------------ccccccchhhHHHHHHHHHHHHhCC
Confidence 334566777777777777787777777777643 122100 0000011124668899999999999
Q ss_pred hhHHHHHhhcC
Q 038758 328 IQKSRKIFVLM 338 (354)
Q Consensus 328 ~~~A~~~~~~m 338 (354)
+++|..++++-
T Consensus 346 ~~~A~~~~~~~ 356 (368)
T 1fch_A 346 SDAYGAADARD 356 (368)
T ss_dssp GGGHHHHHTTC
T ss_pred hHhHHHhHHHH
Confidence 99999988743
No 17
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=1.8e-16 Score=135.21 Aligned_cols=270 Identities=10% Similarity=-0.046 Sum_probs=211.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 45667778899999999999999998864 3466678888899999999999999999999875 557788999999999
Q ss_pred hcCChhHHHHHHHhh----ccccchhhHH--------------HH-HHHhcCchhHHHHHhccCCC---CChhhhHHHHH
Q 038758 112 KCGRMEITSGLFEEM----DQDFLVNNSL--------------ID-FYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLA 169 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~----~~~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~ 169 (354)
..|++++|.+.+++. +.+...+..+ .. .+...|++++|.+.+++..+ .+...+..+..
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 180 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 999999999999998 2233333333 22 37888999999999988763 35678888999
Q ss_pred HHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccC
Q 038758 170 GYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLS 249 (354)
Q Consensus 170 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 249 (354)
.+.+.|++++|.+.++++. .. .+.+...+..+...+...|++++|...++...+..
T Consensus 181 ~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------------- 236 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAV--EL-RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN--------------------- 236 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHH--HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------
T ss_pred HHHHhccHHHHHHHHHHHH--Hh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------------------
Confidence 9999999999999999986 32 23346778888889999999999999998887764
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChh
Q 038758 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQ 329 (354)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 329 (354)
+.+...|..+...+.+.|++++|.+.+++..+.. |+..... + +.....+..+|..+...+.+.|+++
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~---------~--~~~~~~~~~~~~~l~~~~~~~g~~~ 303 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ--VGGTTPT---------G--EASREATRSMWDFFRMLLNVMNRPD 303 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTSCC----------------CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--Ccccccc---------c--cchhhcCHHHHHHHHHHHHhcCCHH
Confidence 3456788899999999999999999999987642 3310000 0 0000113456888999999999999
Q ss_pred HHHHHhhcCCC
Q 038758 330 KSRKIFVLMPH 340 (354)
Q Consensus 330 ~A~~~~~~m~~ 340 (354)
+|.+++++..+
T Consensus 304 ~A~~~~~~~l~ 314 (327)
T 3cv0_A 304 LVELTYAQNVE 314 (327)
T ss_dssp HHHHHTTCCSH
T ss_pred HHHHHHHHHHH
Confidence 99999997765
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.73 E-value=1.3e-15 Score=129.86 Aligned_cols=261 Identities=9% Similarity=-0.020 Sum_probs=209.0
Q ss_pred hhhHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccC-C
Q 038758 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK-D 80 (354)
Q Consensus 2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~ 80 (354)
++|..+++.+.+.. |+... .+..+...+...|++++|..+++++.+.. +.+...+..+...+...| +
T Consensus 39 ~~A~~~~~~~l~~~--p~~~~---------~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 106 (330)
T 3hym_B 39 KMCYKLTSVVMEKD--PFHAS---------CLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHK 106 (330)
T ss_dssp HHHHHHHHHHHHHC--TTCTT---------THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHHHcC--CCChh---------hHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhh
Confidence 45666666666543 32211 55667778889999999999999998864 345677888889999999 9
Q ss_pred hhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccC
Q 038758 81 YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKI 156 (354)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 156 (354)
+++|.+.++...+.. +.+...+..+..++...|++++|.+.|++. +.+...+..+...|...|++++|...|++.
T Consensus 107 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 185 (330)
T 3hym_B 107 NEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQA 185 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999998765 556778999999999999999999999998 445677888999999999999999999887
Q ss_pred CC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcC------CCCCcchHHHHHHHhhhhcCccccchhhhHhhhh
Q 038758 157 KQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD------MQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH 227 (354)
Q Consensus 157 ~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 227 (354)
.+ .+...+..+...+.+.|++++|.+.+++....... .+.+..++..+..++.+.|++++|...++...+.
T Consensus 186 l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 186 LSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 64 35678889999999999999999999988621111 1334568888999999999999999999988876
Q ss_pred ccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCC-HhhHHHHHHHh
Q 038758 228 HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN-TVTIVSVLPAC 298 (354)
Q Consensus 228 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~ 298 (354)
. +.+...|..+...+.+.|++++|.+.|++..+. .|+ ...+..+..++
T Consensus 266 ~---------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 266 I---------------------PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCI 314 (330)
T ss_dssp S---------------------TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHH
T ss_pred C---------------------ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHH
Confidence 5 346788999999999999999999999998754 454 44444444444
No 19
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.73 E-value=1.6e-16 Score=145.12 Aligned_cols=302 Identities=8% Similarity=-0.014 Sum_probs=225.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|..+-..+.+.|++++|...|+++.+.. +.+...|..+...+...|++++|.+.++...+.+ +.+...+..+..++.
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 67788889999999999999999999875 4467778899999999999999999999999875 567788999999999
Q ss_pred hcCChhHHHHHHHhhccccc------------------------------------------------------------
Q 038758 112 KCGRMEITSGLFEEMDQDFL------------------------------------------------------------ 131 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~~~~~~------------------------------------------------------------ 131 (354)
..|++++|...|+.+..+..
T Consensus 105 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred HcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 99999999999865511111
Q ss_pred -----------hhhHHHHHHH--------hcCchhHHHHHhccCCC--CC--------hhhhHHHHHHHHhCCChhHHHH
Q 038758 132 -----------VNNSLIDFYA--------KCRYLKVSHCKFSKIKQ--KD--------LVSWNAMLAGYALGGFREEVTN 182 (354)
Q Consensus 132 -----------~~~~li~~~~--------~~~~~~~a~~~~~~~~~--~~--------~~~~~~li~~~~~~~~~~~a~~ 182 (354)
....+...+. ..|++++|..+|+++.+ |+ ..++..+...+...|++++|.+
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 1111111111 11478888888887765 33 2246667778888999999999
Q ss_pred HHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc----------ccchhHHHHHHhcccC---
Q 038758 183 LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST----------ACGFVICSCSVFNQLS--- 249 (354)
Q Consensus 183 ~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~--- 249 (354)
.|+... . ..|+...+..+...+...|+++.|...+....+....... ..|++++|...|++..
T Consensus 265 ~~~~~~--~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 265 LLQESI--N--LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHH--H--HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHH--h--cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 999987 3 3455777888888899999999999999988876544322 7788888888888764
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc---------ccc-------chh
Q 038758 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG---------LGT-------GSF 313 (354)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~---------~~~-------~~~ 313 (354)
+.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|+++.+ ..| ...
T Consensus 341 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 419 (537)
T 3fp2_A 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419 (537)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence 3456778888888888999999999998887653 33455777788888888887776 111 122
Q ss_pred HHHHHHHHHHhc----------CChhHHHHHhhcCCC
Q 038758 314 VWNALIDMYGRC----------GAIQKSRKIFVLMPH 340 (354)
Q Consensus 314 ~~~~li~~~~~~----------g~~~~A~~~~~~m~~ 340 (354)
.+......+.+. |++++|.+.|++..+
T Consensus 420 ~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp HHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence 244445667777 888899888888765
No 20
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.71 E-value=7.1e-16 Score=140.79 Aligned_cols=324 Identities=9% Similarity=-0.043 Sum_probs=232.1
Q ss_pred hhhHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCCh
Q 038758 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY 81 (354)
Q Consensus 2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 81 (354)
++|...++.+++.. |+... +|..+...+.+.|++++|.+.+++..+.+ +.+...+..+...+...|++
T Consensus 42 ~~A~~~~~~al~~~--p~~~~---------~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~ 109 (537)
T 3fp2_A 42 NEAIKYYQYAIELD--PNEPV---------FYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNF 109 (537)
T ss_dssp C-CHHHHHHHHHHC--TTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhhC--CCCcH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCH
Confidence 45666677666654 33221 78888899999999999999999998865 34566788888999999999
Q ss_pred hhHHHHHHHHHHhccCCCc------------------------------------e------------------------
Q 038758 82 RVGKDVYDYMISIKFEGNA------------------------------------C------------------------ 101 (354)
Q Consensus 82 ~~a~~~~~~m~~~~~~~~~------------------------------------~------------------------ 101 (354)
++|.+.|+.+....-.++. .
T Consensus 110 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (537)
T 3fp2_A 110 TDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY 189 (537)
T ss_dssp HHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSS
T ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccc
Confidence 9999988633111100000 0
Q ss_pred ------ehhhHHHHHH--------hcCChhHHHHHHHhh---ccc--------cchhhHHHHHHHhcCchhHHHHHhccC
Q 038758 102 ------VKRPLLDLFI--------KCGRMEITSGLFEEM---DQD--------FLVNNSLIDFYAKCRYLKVSHCKFSKI 156 (354)
Q Consensus 102 ------~~~~li~~~~--------~~g~~~~a~~~~~~~---~~~--------~~~~~~li~~~~~~~~~~~a~~~~~~~ 156 (354)
....+...+. ..|++++|..+|+++ .|+ ..++..+...+...|++++|...|++.
T Consensus 190 ~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~ 269 (537)
T 3fp2_A 190 DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQES 269 (537)
T ss_dssp CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 1111111111 114778888888877 222 224666777888889999999999877
Q ss_pred CC--CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc-
Q 038758 157 KQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST- 233 (354)
Q Consensus 157 ~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 233 (354)
.+ |+...|..+...+...|++++|.+.|++.. ... +.+..++..+...+...|++++|...++...+.......
T Consensus 270 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 346 (537)
T 3fp2_A 270 INLHPTPNSYIFLALTLADKENSQEFFKFFQKAV--DLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYP 346 (537)
T ss_dssp HHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHH--HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHH
T ss_pred HhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHh--ccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 63 666778888888889999999999999886 322 234667888888888999999999999888876544332
Q ss_pred ---------ccchhHHHHHHhcccC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcC-----CCHhhHHHHHH
Q 038758 234 ---------ACGFVICSCSVFNQLS---TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK-----PNTVTIVSVLP 296 (354)
Q Consensus 234 ---------~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-----p~~~t~~~li~ 296 (354)
..|++++|...+++.. +.+...|..+...+...|++++|...|+++.+..-. .....+.....
T Consensus 347 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~ 426 (537)
T 3fp2_A 347 YIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT 426 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHH
Confidence 7888999998888764 445678999999999999999999999998764311 11112333345
Q ss_pred Hhhcc----------CcccCc---------ccc-chhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 297 ACLKL----------AALPQG---------LGT-GSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 297 ~~~~~----------~~~~~~---------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
.+... |+++.+ ..| +..++..+...|.+.|++++|.+.|++..+
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 56666 777776 333 578899999999999999999999998775
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.71 E-value=3.2e-17 Score=141.56 Aligned_cols=255 Identities=10% Similarity=0.127 Sum_probs=123.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
+|..|..++.+.|++++|.+.|.+ .+|..+|..++.++...|++++|.++++...+. .+++.+.+.|+.+|.
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~ 105 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHH
Confidence 688899999999999999999965 367789999999999999999999988777663 566888999999999
Q ss_pred hcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhh
Q 038758 112 KCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 191 (354)
+.|+++++.++++. |+..+|..+...|...|++++|...|..+ ..|..+..++.+.|++++|.+.++.+.
T Consensus 106 Klg~l~e~e~f~~~--pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA~--- 175 (449)
T 1b89_A 106 KTNRLAELEEFING--PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKAN--- 175 (449)
T ss_dssp ---CHHHHTTTTTC--C----------------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHHT---
T ss_pred HhCCHHHHHHHHcC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHcC---
Confidence 99999999998875 77789999999999999999999999987 489999999999999999999999773
Q ss_pred cCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHH
Q 038758 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271 (354)
Q Consensus 192 ~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 271 (354)
++.+|..++.+|...|+++.|......+. .+......++..|.+.|++++
T Consensus 176 -----~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-------------------------~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 176 -----STRTWKEVCFACVDGKEFRLAQMCGLHIV-------------------------VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-------------------------TCHHHHHHHHHHHHHTTCHHH
T ss_pred -----CchhHHHHHHHHHHcCcHHHHHHHHHHHH-------------------------hCHhhHHHHHHHHHHCCCHHH
Confidence 67899999999999999999966544322 122224458888999999999
Q ss_pred HHHHHHHHHHcCcCCCHhhHHHHHHHhhcc--CcccCc---------ccc------chhHHHHHHHHHHhcCChhHHHHH
Q 038758 272 ALDLLRDVIVANVKPNTVTIVSVLPACLKL--AALPQG---------LGT------GSFVWNALIDMYGRCGAIQKSRKI 334 (354)
Q Consensus 272 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~--~~~~~~---------~~~------~~~~~~~li~~~~~~g~~~~A~~~ 334 (354)
|..+++...... +--...|+-+-.++++- +++.+. ++| +...|.-+.-.|...|+++.|...
T Consensus 226 ai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 226 LITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 999998887332 22233444444444433 333222 222 467799999999999999988765
Q ss_pred h
Q 038758 335 F 335 (354)
Q Consensus 335 ~ 335 (354)
.
T Consensus 305 m 305 (449)
T 1b89_A 305 M 305 (449)
T ss_dssp H
T ss_pred H
Confidence 4
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.70 E-value=2.1e-16 Score=137.28 Aligned_cols=277 Identities=10% Similarity=-0.025 Sum_probs=189.3
Q ss_pred ccccchhhhhhHhhhhhhHHHHH-HHHHhcCChhHHHH-HHHHHHhCCC---cCCcccHHHHHHHHhccCChhhHHHHHH
Q 038758 15 GVELCAFLGSQLLEVFCNWTSMM-GMYNVLGYYEEIVN-LFYLMIDKGV---RPDHFVCPKVYKACSELKDYRVGKDVYD 89 (354)
Q Consensus 15 g~~~~~~~~~~li~~~~~y~~li-~~~~~~~~~~~a~~-~~~~m~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 89 (354)
.+..+...|..+...+..+..+- ..+...|++++|.+ .+++...... ..+...+..+...+...|++++|...|+
T Consensus 9 ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 88 (368)
T 1fch_A 9 AIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFE 88 (368)
T ss_dssp -------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcccCcccHHHHHHHHHHHHcCCchhhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33444454554444433222221 14556688999988 8776554321 1245678889999999999999999999
Q ss_pred HHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CC-hh
Q 038758 90 YMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KD-LV 162 (354)
Q Consensus 90 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~ 162 (354)
.+.+.. +.+..++..+..++...|++++|.+.|++. +.+..++..+...|...|++++|...|+++.. |+ ..
T Consensus 89 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 167 (368)
T 1fch_A 89 AAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH 167 (368)
T ss_dssp HHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGG
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence 999875 567778999999999999999999999987 44677888899999999999999999987653 22 22
Q ss_pred hhHH---------------HHHHHHhCCChhHHHHHHHHHHhhhcCCC-CCcchHHHHHHHhhhhcCccccchhhhHhhh
Q 038758 163 SWNA---------------MLAGYALGGFREEVTNLLDEMEMIQTDMQ-PNTISLSGVLAACAQVKGVKLGKAIHGYVLR 226 (354)
Q Consensus 163 ~~~~---------------li~~~~~~~~~~~a~~~~~~m~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 226 (354)
.+.. .+..+...|++++|.+.|+++. ..... ++..++..+...+.+.|++++|...++...+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~--~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 168 LVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAV--RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp GCC---------------CTTHHHHHHHHHHHHHHHHHHHH--HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHH--HhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2211 2333448899999999999987 32211 1467788888889999999999999888777
Q ss_pred hccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccC
Q 038758 227 HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ 306 (354)
Q Consensus 227 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 306 (354)
.. +.+..+|..+...+.+.|++++|...|+++.+. .|+.
T Consensus 246 ~~---------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~------------------ 284 (368)
T 1fch_A 246 VR---------------------PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGY------------------ 284 (368)
T ss_dssp HC---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC------------------
T ss_pred hC---------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc------------------
Confidence 64 345678889999999999999999999998764 3432
Q ss_pred ccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 307 GLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 307 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
..++..+...|.+.|++++|.+.|++..+
T Consensus 285 -----~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 285 -----IRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23488899999999999999999998876
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.68 E-value=6.8e-16 Score=134.01 Aligned_cols=229 Identities=11% Similarity=-0.036 Sum_probs=184.6
Q ss_pred CCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHH
Q 038758 63 PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLID 138 (354)
Q Consensus 63 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~ 138 (354)
.+...+..+...+.+.|++++|.++|+.+.+.. +.+..++..+..+|...|++++|...|++. +.+..++..+..
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV 141 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 355668889999999999999999999999875 667889999999999999999999999988 445778899999
Q ss_pred HHHhcCchhHHHHHhccCCC--CC-----------hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCC-CCcchHHHH
Q 038758 139 FYAKCRYLKVSHCKFSKIKQ--KD-----------LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ-PNTISLSGV 204 (354)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~--~~-----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-p~~~t~~~l 204 (354)
.|...|++++|...|+++.+ |+ ...+..+...+.+.|++++|.+.|+++. ..... ++..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAA--HQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHH--HHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHH--HhCcCccCHHHHHHH
Confidence 99999999999999988764 21 1223445788899999999999999997 33221 256788889
Q ss_pred HHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Q 038758 205 LAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANV 284 (354)
Q Consensus 205 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 284 (354)
...+.+.|++++|...++...+.. +.+..+|+.+...|.+.|++++|+..|++..+.
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~---------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 276 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR---------------------PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI-- 276 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 999999999999999998888765 346788999999999999999999999999865
Q ss_pred CCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 285 KPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 285 ~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
.|+. ..++..+...|.+.|++++|.+.|++..+
T Consensus 277 ~p~~-----------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 277 QPGF-----------------------IRSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp CTTC-----------------------HHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCc-----------------------hHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3442 23478889999999999999999998876
No 24
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.68 E-value=5.7e-15 Score=127.34 Aligned_cols=271 Identities=7% Similarity=-0.001 Sum_probs=198.1
Q ss_pred hhhHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCCh
Q 038758 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY 81 (354)
Q Consensus 2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 81 (354)
++|...++.+++.. |+... +|..+...+...|++++|...+++..+.. +-+...+..+...+...|++
T Consensus 20 ~~A~~~~~~~l~~~--p~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 87 (359)
T 3ieg_A 20 ADALSQFHAAVDGD--PDNYI---------AYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKL 87 (359)
T ss_dssp HHHHHHHHHHHHHC--TTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhhC--cccHH---------HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCCh
Confidence 45677777777643 43221 67788888999999999999999998864 33556788899999999999
Q ss_pred hhHHHHHHHHHHhccC---CCceehhhH------------HHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHh
Q 038758 82 RVGKDVYDYMISIKFE---GNACVKRPL------------LDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAK 142 (354)
Q Consensus 82 ~~a~~~~~~m~~~~~~---~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~ 142 (354)
++|.+.++...+.. + .+...+..+ ...+...|++++|.+.+++. +.+...+..+...+..
T Consensus 88 ~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (359)
T 3ieg_A 88 DEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIK 166 (359)
T ss_dssp HHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 99999999998763 2 344455544 57889999999999999998 4566788889999999
Q ss_pred cCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCc-chHH------------HHHH
Q 038758 143 CRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT-ISLS------------GVLA 206 (354)
Q Consensus 143 ~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~-~t~~------------~ll~ 206 (354)
.|++++|...+++..+ .+...+..+...+...|++++|.+.|+... .. .|+. ..+. ....
T Consensus 167 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~--~~--~~~~~~~~~~~~~~~~~~~~~~~a~ 242 (359)
T 3ieg_A 167 EGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL--KL--DQDHKRCFAHYKQVKKLNKLIESAE 242 (359)
T ss_dssp TTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HH--CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hh--CccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987764 356788899999999999999999999987 32 3332 2222 2245
Q ss_pred HhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCC
Q 038758 207 ACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286 (354)
Q Consensus 207 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 286 (354)
.+.+.|++++|...++...+....... .....+..+...+.+.|++++|...+++..+.. +.
T Consensus 243 ~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~ 304 (359)
T 3ieg_A 243 ELIRDGRYTDATSKYESVMKTEPSVAE-----------------YTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PD 304 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSSHH-----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchH-----------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cc
Confidence 577888888888888887775431100 000223445566777777777777777776542 22
Q ss_pred CHhhHHHHHHHhhccCcccCc
Q 038758 287 NTVTIVSVLPACLKLAALPQG 307 (354)
Q Consensus 287 ~~~t~~~li~~~~~~~~~~~~ 307 (354)
+...+..+...+...|+.+++
T Consensus 305 ~~~~~~~~~~~~~~~g~~~~A 325 (359)
T 3ieg_A 305 NVNALKDRAEAYLIEEMYDEA 325 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHH
Confidence 455666677777777776665
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.67 E-value=1.7e-15 Score=127.10 Aligned_cols=214 Identities=11% Similarity=0.036 Sum_probs=161.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCCh
Q 038758 37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM 116 (354)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 116 (354)
|+.....|++..|+..++........+.......+.+++...|+++.|...++. . -+|+..++..+...+...|+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence 345567799999999888765543222234556677889999999988876643 2 366777888888999999999
Q ss_pred hHHHHHHHhh-----cc-ccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhh
Q 038758 117 EITSGLFEEM-----DQ-DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI 190 (354)
Q Consensus 117 ~~a~~~~~~~-----~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 190 (354)
++|.+.++++ .| +...+..+...+...|++++|.+.+++ ..+...+..+...+.+.|++++|.+.|+.+.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~-- 157 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQ-- 157 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--
Confidence 9999999986 13 344566677889999999999999998 4567788888899999999999999999997
Q ss_pred hcCCCCCcchHHHHH----HHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhc
Q 038758 191 QTDMQPNTISLSGVL----AACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS 266 (354)
Q Consensus 191 ~~~~~p~~~t~~~ll----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 266 (354)
.. .|+.. ...+. ..+...|++++|..+++.+.+.. +.+...|+.+..++.+.
T Consensus 158 ~~--~p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~---------------------p~~~~~~~~la~~~~~~ 213 (291)
T 3mkr_A 158 DQ--DEDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKC---------------------SPTLLLLNGQAACHMAQ 213 (291)
T ss_dssp HH--CTTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS---------------------CCCHHHHHHHHHHHHHT
T ss_pred hh--CcCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC---------------------CCcHHHHHHHHHHHHHc
Confidence 43 35543 22222 22334477788888887777663 45778889999999999
Q ss_pred CCHHHHHHHHHHHHHc
Q 038758 267 GQVVDALDLLRDVIVA 282 (354)
Q Consensus 267 g~~~~a~~~~~~m~~~ 282 (354)
|++++|+..|++..+.
T Consensus 214 g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 214 GRWEAAEGVLQEALDK 229 (291)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998865
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.65 E-value=4.9e-15 Score=124.33 Aligned_cols=225 Identities=10% Similarity=0.050 Sum_probs=183.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCC-CceehhhHHHHHHh
Q 038758 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG-NACVKRPLLDLFIK 112 (354)
Q Consensus 34 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~ 112 (354)
-.+.++|...|+++.|+..++. . -+|+..++..+...+...++.+.|.+.++.+...+..| +...+..+..++..
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~ 113 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY 113 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH
Confidence 3467889999999999987654 2 35677788888999999999999999999998876545 45566777799999
Q ss_pred cCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCC--CChhhh---HHHHHHHHhCCChhHHHHHHHHH
Q 038758 113 CGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSW---NAMLAGYALGGFREEVTNLLDEM 187 (354)
Q Consensus 113 ~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~---~~li~~~~~~~~~~~a~~~~~~m 187 (354)
.|++++|.+.+++ +.+...+..++..|.+.|++++|.+.|+++.+ |+.... ..++..+...|++++|..+|+++
T Consensus 114 ~g~~~~Al~~l~~-~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~ 192 (291)
T 3mkr_A 114 DQNPDAALRTLHQ-GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEM 192 (291)
T ss_dssp TTCHHHHHHHHTT-CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 9999999999999 67788899999999999999999999999874 553322 22334445568999999999999
Q ss_pred HhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcC
Q 038758 188 EMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG 267 (354)
Q Consensus 188 ~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 267 (354)
. .. .+.+...++.+..++.+.|++++|...+++..+.. +.+..++..++..+...|
T Consensus 193 l--~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~---------------------p~~~~~l~~l~~~~~~~g 248 (291)
T 3mkr_A 193 A--DK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD---------------------SGHPETLINLVVLSQHLG 248 (291)
T ss_dssp H--HH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHTT
T ss_pred H--Hh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHcC
Confidence 7 43 45567788899999999999999999999988875 346778999999999999
Q ss_pred CHHH-HHHHHHHHHHcCcCCCHh
Q 038758 268 QVVD-ALDLLRDVIVANVKPNTV 289 (354)
Q Consensus 268 ~~~~-a~~~~~~m~~~g~~p~~~ 289 (354)
+.++ +.++++++.+. .|+..
T Consensus 249 ~~~eaa~~~~~~~~~~--~P~~~ 269 (291)
T 3mkr_A 249 KPPEVTNRYLSQLKDA--HRSHP 269 (291)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCH
T ss_pred CCHHHHHHHHHHHHHh--CCCCh
Confidence 9876 67899998865 56654
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.63 E-value=7.1e-16 Score=133.19 Aligned_cols=209 Identities=10% Similarity=0.013 Sum_probs=66.6
Q ss_pred hcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHH
Q 038758 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSG 121 (354)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 121 (354)
+.|++++|.+.++++. +...|..|..++.+.|++++|.+.|.. .+|..+|..++..+...|++++|++
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5577888888888873 224788888888888888888888854 3577788888888888888888888
Q ss_pred HHHhhc---cccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCc
Q 038758 122 LFEEMD---QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT 198 (354)
Q Consensus 122 ~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~ 198 (354)
+++... ++..+.+.|+.+|.+.|++++++++++. |+..+|+.+...|...|++++|...|..+.
T Consensus 83 yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~---------- 149 (449)
T 1b89_A 83 YLQMARKKARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------- 149 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHTT----------
T ss_pred HHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHhh----------
Confidence 666552 3346778888888888888888877753 677788888888888888888888887652
Q ss_pred chHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 038758 199 ISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRD 278 (354)
Q Consensus 199 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 278 (354)
.|..+..++.+.|+++.|.+.+... .++.+|..++.+|+..|+++.|......
T Consensus 150 -n~~~LA~~L~~Lg~yq~AVea~~KA--------------------------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~ 202 (449)
T 1b89_A 150 -NFGRLASTLVHLGEYQAAVDGARKA--------------------------NSTRTWKEVCFACVDGKEFRLAQMCGLH 202 (449)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHH--------------------------TCHHHHHHHHHHHHHTTCHHHHHHTTTT
T ss_pred -hHHHHHHHHHHhccHHHHHHHHHHc--------------------------CCchhHHHHHHHHHHcCcHHHHHHHHHH
Confidence 6777888888777777766666543 2556788888888888888888554433
Q ss_pred HHHcCcCCCHhhHHHHHHHhhccCcccCc
Q 038758 279 VIVANVKPNTVTIVSVLPACLKLAALPQG 307 (354)
Q Consensus 279 m~~~g~~p~~~t~~~li~~~~~~~~~~~~ 307 (354)
+. +.|+. ...++..|.+.|.++++
T Consensus 203 L~---~~ad~--l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 203 IV---VHADE--LEELINYYQDRGYFEEL 226 (449)
T ss_dssp TT---TCHHH--HHHHHHHHHHTTCHHHH
T ss_pred HH---hCHhh--HHHHHHHHHHCCCHHHH
Confidence 21 23332 33455555555555444
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.61 E-value=9.5e-15 Score=124.41 Aligned_cols=254 Identities=9% Similarity=-0.020 Sum_probs=192.8
Q ss_pred hhhHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCCh
Q 038758 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY 81 (354)
Q Consensus 2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 81 (354)
++|..+++.+.+.. |+... .|..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 38 ~~A~~~~~~~~~~~--~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~ 105 (327)
T 3cv0_A 38 AEAALAFEAVCQAA--PEREE---------AWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 105 (327)
T ss_dssp HHHHHHHHHHHHHC--TTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhC--CCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCH
Confidence 45667777776643 33211 67778888999999999999999998864 34667788899999999999
Q ss_pred hhHHHHHHHHHHhccCCCceehhhH--------------HH-HHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHh
Q 038758 82 RVGKDVYDYMISIKFEGNACVKRPL--------------LD-LFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAK 142 (354)
Q Consensus 82 ~~a~~~~~~m~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~ 142 (354)
++|.+.++...+.. +.+...+..+ .. .+...|++++|.+.+++. +.+...+..+...|.+
T Consensus 106 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 184 (327)
T 3cv0_A 106 NAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNL 184 (327)
T ss_dssp HHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 99999999998764 3334444443 33 478889999999999998 4466788899999999
Q ss_pred cCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccch
Q 038758 143 CRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKA 219 (354)
Q Consensus 143 ~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 219 (354)
.|++++|.+.+++..+ .+..++..+...+.+.|++++|.+.|++.. ... +.+...+..+...+.+.|++++|..
T Consensus 185 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~--~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 261 (327)
T 3cv0_A 185 SNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRAL--DIN-PGYVRVMYNMAVSYSNMSQYDLAAK 261 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HcC-CCCHHHHHHHHHHHHHhccHHHHHH
Confidence 9999999999988753 356788999999999999999999999986 322 2346778888899999999999999
Q ss_pred hhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038758 220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280 (354)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 280 (354)
.++...+.........+. .....+...|..+...+.+.|+.++|..++++..
T Consensus 262 ~~~~a~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 262 QLVRAIYMQVGGTTPTGE---------ASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHTTSCC--------------CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHhCCcccccccc---------chhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 998888765410000000 0000046688889999999999999999987654
No 29
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=8.8e-14 Score=114.14 Aligned_cols=221 Identities=12% Similarity=0.017 Sum_probs=184.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccC--CC----ceehhh
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE--GN----ACVKRP 105 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~----~~~~~~ 105 (354)
.|..+-..+...|++++|...|++..+.. .+...+..+...+...|++++|.+.++...+.... ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 56778888999999999999999999887 78889999999999999999999999999876421 22 578899
Q ss_pred HHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHH
Q 038758 106 LLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTN 182 (354)
Q Consensus 106 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 182 (354)
+..++...|++++|...|++....... ...+.+.|++++|...+++... .+...+..+...+...|++++|.+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 160 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT----ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVK 160 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch----hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999999987221111 3567788999999999988754 245678888899999999999999
Q ss_pred HHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHH
Q 038758 183 LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISA 262 (354)
Q Consensus 183 ~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~ 262 (354)
.|++.. .. .+.+...+..+..++.+.|++++|...++...+.. +.+...|..+...
T Consensus 161 ~~~~a~--~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---------------------~~~~~~~~~l~~~ 216 (258)
T 3uq3_A 161 AYTEMI--KR-APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD---------------------PNFVRAYIRKATA 216 (258)
T ss_dssp HHHHHH--HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHH
T ss_pred HHHHHH--hc-CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---------------------HHHHHHHHHHHHH
Confidence 999997 32 23356778888899999999999999998888764 3457788899999
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 038758 263 FVRSGQVVDALDLLRDVIVA 282 (354)
Q Consensus 263 ~~~~g~~~~a~~~~~~m~~~ 282 (354)
+.+.|++++|...|++..+.
T Consensus 217 ~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 217 QIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999998764
No 30
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.55 E-value=5e-12 Score=104.68 Aligned_cols=229 Identities=10% Similarity=0.078 Sum_probs=180.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCcee----hhhHHHHH
Q 038758 35 SMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV----KRPLLDLF 110 (354)
Q Consensus 35 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~~li~~~ 110 (354)
..-..+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.++...+.+ ++... |..+..++
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHH
Confidence 45567889999999999999999864 3345588889999999999999999999999843 44333 78899999
Q ss_pred HhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHH
Q 038758 111 IKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNL 183 (354)
Q Consensus 111 ~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~ 183 (354)
...|++++|.+.|++. +.+..++..+...|...|++++|...|++..+ | +...|..+...+...+++++|.+.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 45667889999999999999999999998875 3 455666666244455699999999
Q ss_pred HHHHHhhhcCCCCC-cchHHHHHHHhhhhcC---ccccchhhhHhhhhccccccccchhHHHHHHhcccCCC----Ccch
Q 038758 184 LDEMEMIQTDMQPN-TISLSGVLAACAQVKG---VKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTR----DVVV 255 (354)
Q Consensus 184 ~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 255 (354)
|++.. . ..|+ ...+..+..++...++ .+.|...++...+.... .+.+ ....
T Consensus 165 ~~~a~--~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-----------------~~~~~~~~~~~~ 223 (272)
T 3u4t_A 165 FVKVL--E--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAP-----------------GGAKYKDELIEA 223 (272)
T ss_dssp HHHHH--H--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGG-----------------GGGGGHHHHHHH
T ss_pred HHHHH--H--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhc-----------------ccccchHHHHHH
Confidence 99997 3 2344 5566667777777787 78888888777765421 0011 1246
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHh
Q 038758 256 WNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289 (354)
Q Consensus 256 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 289 (354)
|..+...|.+.|++++|.+.|++..+. .|+..
T Consensus 224 ~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~ 255 (272)
T 3u4t_A 224 NEYIAYYYTINRDKVKADAAWKNILAL--DPTNK 255 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CccHH
Confidence 778888999999999999999999865 46544
No 31
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=6.6e-14 Score=116.18 Aligned_cols=220 Identities=7% Similarity=-0.083 Sum_probs=170.1
Q ss_pred HhcCChhHHHHHHHHHHhCCC---cCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChh
Q 038758 41 NVLGYYEEIVNLFYLMIDKGV---RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRME 117 (354)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 117 (354)
...|++++|...++++.+... +.+...+..+...+...|++++|.+.|+...+.. +.+..++..+..+|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 456899999999999998642 1245668888899999999999999999999875 557888999999999999999
Q ss_pred HHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhh
Q 038758 118 ITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191 (354)
Q Consensus 118 ~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 191 (354)
+|.+.|++. +.+...+..+...|.+.|++++|...|+++.+ |+.......+..+...|++++|...+++.. .
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF--E 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHH--h
Confidence 999999998 44677888999999999999999999988864 555555555556677799999999998775 3
Q ss_pred cCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHH
Q 038758 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271 (354)
Q Consensus 192 ~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 271 (354)
. .+++...+. +...+...++.+++...+....+...... ..+...|..+...|.+.|++++
T Consensus 173 ~-~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------------~~~~~~~~~la~~~~~~g~~~~ 233 (275)
T 1xnf_A 173 K-SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLA-----------------EHLSETNFYLGKYYLSLGDLDS 233 (275)
T ss_dssp H-SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHH-----------------HHHHHHHHHHHHHHHHTTCHHH
T ss_pred c-CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhccccccc-----------------ccccHHHHHHHHHHHHcCCHHH
Confidence 2 233444443 55556666666667776666554432100 0124678889999999999999
Q ss_pred HHHHHHHHHHc
Q 038758 272 ALDLLRDVIVA 282 (354)
Q Consensus 272 a~~~~~~m~~~ 282 (354)
|...|++..+.
T Consensus 234 A~~~~~~al~~ 244 (275)
T 1xnf_A 234 ATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhC
Confidence 99999999864
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.53 E-value=9.6e-14 Score=111.30 Aligned_cols=191 Identities=12% Similarity=0.004 Sum_probs=109.0
Q ss_pred CcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHH
Q 038758 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDF 139 (354)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~ 139 (354)
+...+..+...+.+.|++++|...|+...+.. +.+...+..+..++.+.|++++|...|++. +.+...+..+...
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34444445555555555555555555555443 334444555555555555555555555544 2233444555555
Q ss_pred HHhc-----------CchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHH
Q 038758 140 YAKC-----------RYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205 (354)
Q Consensus 140 ~~~~-----------~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll 205 (354)
+.+. |++++|...|++..+ | +...|..+...+...|++++|...|++.. ... .+...+..+.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--~~~--~~~~~~~~la 158 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQAL--ALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHC--CCHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHH--hcc--cchHHHHHHH
Confidence 5555 666666666665542 3 45567777778888888888888888877 444 5666777777
Q ss_pred HHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038758 206 AACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280 (354)
Q Consensus 206 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 280 (354)
.++...|++++|...++...+.. +.+...+..+...+.+.|++++|...|++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~---------------------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA---------------------PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS---------------------TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC---------------------CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 77888888888888887777654 3356677777788888888888888877654
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.52 E-value=6.9e-13 Score=119.07 Aligned_cols=306 Identities=8% Similarity=-0.077 Sum_probs=195.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC-----C--CcC-CcccHHHHHHHHhccCChhhHHHHHHHHHHhcc---C---
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-----G--VRP-DHFVCPKVYKACSELKDYRVGKDVYDYMISIKF---E--- 97 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~-----~--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~--- 97 (354)
.||.|-..+...|++++|++.|++..+. + ..| ...+|+.+..+|...|++++|...++...+..- .
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 6899999999999999999999987542 1 122 345688899999999999999999998875421 1
Q ss_pred C-CceehhhHHHHHHhc--CChhHHHHHHHhh---cc-ccchhhHHHHH---HHhcCchhHHHHHhccCCC--C-Chhhh
Q 038758 98 G-NACVKRPLLDLFIKC--GRMEITSGLFEEM---DQ-DFLVNNSLIDF---YAKCRYLKVSHCKFSKIKQ--K-DLVSW 164 (354)
Q Consensus 98 ~-~~~~~~~li~~~~~~--g~~~~a~~~~~~~---~~-~~~~~~~li~~---~~~~~~~~~a~~~~~~~~~--~-~~~~~ 164 (354)
+ ...++..+..++... +++++|.+.|++. .| +...+..+..+ +...++.++|.+.+++..+ | +...+
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~ 212 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLK 212 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHH
Confidence 1 123455555555554 5799999999987 33 34444444444 3445667778777765542 3 44555
Q ss_pred HHHHHHHHh----CCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc-------
Q 038758 165 NAMLAGYAL----GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST------- 233 (354)
Q Consensus 165 ~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------- 233 (354)
..+...+.. .+++++|.+.+++.. .. .+.+...+..+...+.+.|++++|...+....+.......
T Consensus 213 ~~l~~~~~~~~~~~~~~~~a~~~~~~al--~~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 289 (472)
T 4g1t_A 213 VLLALKLHKMREEGEEEGEGEKLVEEAL--EK-APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGC 289 (472)
T ss_dssp HHHHHHHHHCC------CHHHHHHHHHH--HH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH--Hh-CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 555544444 456788888888875 22 2334566777888888999999999888887766543221
Q ss_pred ----------------------ccchhHHHHHHhcccC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCH
Q 038758 234 ----------------------ACGFVICSCSVFNQLS---TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288 (354)
Q Consensus 234 ----------------------~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 288 (354)
..+..++|...+++.. +.+..++..+...|...|++++|++.|++..+....|..
T Consensus 290 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~ 369 (472)
T 4g1t_A 290 CYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369 (472)
T ss_dssp HHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH
Confidence 1233456666666543 456778888999999999999999999998876433322
Q ss_pred h--hHHHHHH-HhhccCcccCc----------------------------------cccchhHHHHHHHHHHhcCChhHH
Q 038758 289 V--TIVSVLP-ACLKLAALPQG----------------------------------LGTGSFVWNALIDMYGRCGAIQKS 331 (354)
Q Consensus 289 ~--t~~~li~-~~~~~~~~~~~----------------------------------~~~~~~~~~~li~~~~~~g~~~~A 331 (354)
. .+..+.. .....|+.+.| -+.+..+|..+...|...|++++|
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A 449 (472)
T 4g1t_A 370 KQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQA 449 (472)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 1 1112111 22344554443 123567899999999999999999
Q ss_pred HHHhhcCCC
Q 038758 332 RKIFVLMPH 340 (354)
Q Consensus 332 ~~~~~~m~~ 340 (354)
.+.|++..+
T Consensus 450 ~~~y~kALe 458 (472)
T 4g1t_A 450 DEDSERGLE 458 (472)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 999999887
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=3e-13 Score=110.97 Aligned_cols=217 Identities=7% Similarity=-0.072 Sum_probs=176.3
Q ss_pred ccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh---ccc--------cchhh
Q 038758 66 FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM---DQD--------FLVNN 134 (354)
Q Consensus 66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~--------~~~~~ 134 (354)
..+..+...+...|++++|.++|+...+.. .+...+..+..++...|++++|.+.+++. .|+ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 457778888999999999999999999887 88889999999999999999999999987 222 46778
Q ss_pred HHHHHHHhcCchhHHHHHhccCCC--CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhc
Q 038758 135 SLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212 (354)
Q Consensus 135 ~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~ 212 (354)
.+...|.+.|++++|...|++..+ |+ ...+.+.|++++|.+.++.+. .. .+.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEA--YV-NPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHH--HC-CHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHH--Hc-CcchHHHHHHHHHHHHHhc
Confidence 888999999999999999988764 33 234666788899999999886 32 2224566777888888899
Q ss_pred CccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHH
Q 038758 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292 (354)
Q Consensus 213 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 292 (354)
++++|...++...+.. +.+..+|..+...+.+.|++++|...+++..+.. |+.
T Consensus 154 ~~~~A~~~~~~a~~~~---------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~---- 206 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA---------------------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNF---- 206 (258)
T ss_dssp CHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC----
T ss_pred CHHHHHHHHHHHHhcC---------------------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HHH----
Confidence 9999999888887765 3466788889999999999999999999987643 432
Q ss_pred HHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 293 SVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 293 ~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
..+|..+...+.+.|++++|.+.+++..+
T Consensus 207 -------------------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 207 -------------------VRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp -------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 23477888899999999999999987764
No 35
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=1.2e-12 Score=107.21 Aligned_cols=197 Identities=6% Similarity=-0.074 Sum_probs=127.1
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhc
Q 038758 68 CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKC 143 (354)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~ 143 (354)
+..+...+...|++++|.+.++.+.+.. +.+...+..+..++...|++++|.+.|++. +.+...+..+...|...
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 118 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQ 118 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHH
Confidence 4444444455555555555555554432 333444555555555555555555555544 22334445555555555
Q ss_pred CchhHHHHHhccCCC----C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccc
Q 038758 144 RYLKVSHCKFSKIKQ----K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGK 218 (354)
Q Consensus 144 ~~~~~a~~~~~~~~~----~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 218 (354)
|++++|.+.|++..+ | +...+..+...+.+.|++++|.+.|++.. ... +.+...+..+...+...|++++|.
T Consensus 119 g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL--RLN-RNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 666666665555433 2 34567778888889999999999998886 322 234567778888888888888888
Q ss_pred hhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhH
Q 038758 219 AIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI 291 (354)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 291 (354)
..++...+.. +.+...+..+...+.+.|+.++|.+.++++.+. .|+...+
T Consensus 196 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~ 245 (252)
T 2ho1_A 196 QYYDLFAQGG---------------------GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEY 245 (252)
T ss_dssp HHHHHHHTTS---------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHH
T ss_pred HHHHHHHHhC---------------------cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHH
Confidence 8888777654 345667888888999999999999999999865 4555443
No 36
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.49 E-value=4.8e-12 Score=122.07 Aligned_cols=281 Identities=13% Similarity=0.095 Sum_probs=199.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC--cCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGV--RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 34 ~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
...+++|...|.+.++++++++....+- .-+....+.++.+..+. +..+..++.+.+.+.. ...+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------APDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHHHHHHHH
Confidence 4567788899999999999999984321 01223344455444433 3333333333322110 111333333
Q ss_pred ---------------------------hcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhh
Q 038758 112 ---------------------------KCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSW 164 (354)
Q Consensus 112 ---------------------------~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 164 (354)
..+++++|.++.++. .+..+|..+..++.+.|++++|.+.|.+. .|...|
T Consensus 1061 ~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aerv-n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say 1137 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERC-NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSY 1137 (1630)
T ss_pred hCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHH
Confidence 444455555554444 45778889999999999999999999775 577788
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc----ccchhHH
Q 038758 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST----ACGFVIC 240 (354)
Q Consensus 165 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~ 240 (354)
..++.++.+.|++++|.+.|...+ +.. ++....+.+..+|++.++++....+.+......+.... ..|++++
T Consensus 1138 ~eVa~~~~~lGkyEEAIeyL~mAr--k~~--~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~Yee 1213 (1630)
T 1xi4_A 1138 MEVVQAANTSGNWEELVKYLQMAR--KKA--RESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDA 1213 (1630)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH--hhc--ccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHH
Confidence 889999999999999999999876 433 44434445888899998877544443211110100000 8899999
Q ss_pred HHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc------cccchhH
Q 038758 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG------LGTGSFV 314 (354)
Q Consensus 241 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~------~~~~~~~ 314 (354)
|...|... ..|..+...|++.|++++|.+.+++.. +..+|..+-.+|...|+++.| +..++..
T Consensus 1214 A~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~de 1282 (1630)
T 1xi4_A 1214 AKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE 1282 (1630)
T ss_pred HHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHH
Confidence 99999985 489999999999999999999998773 558888888899988888887 4456677
Q ss_pred HHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 315 WNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
+..++..|.+.|.+++|.++++.-..
T Consensus 1283 Leeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1283 LEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88999999999999999999988765
No 37
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.48 E-value=1.6e-12 Score=104.21 Aligned_cols=209 Identities=8% Similarity=-0.087 Sum_probs=138.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 45556666666777777777777666543 2334456666666666667777777766666543 334455556666666
Q ss_pred hc-CChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCC-ChhhhHHHHHHHHhCCChhHHHHHHHHHHh
Q 038758 112 KC-GRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK-DLVSWNAMLAGYALGGFREEVTNLLDEMEM 189 (354)
Q Consensus 112 ~~-g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 189 (354)
.. |++++|...+++... .-..| +...+..+...+.+.|++++|.+.++++.
T Consensus 88 ~~~~~~~~A~~~~~~~~~--------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 140 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALA--------------------------DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL- 140 (225)
T ss_dssp TTTCCHHHHHHHHHHHHT--------------------------STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred HhcCcHHHHHHHHHHHHc--------------------------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Confidence 66 666666665554311 00012 24567778888888999999999998886
Q ss_pred hhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCH
Q 038758 190 IQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269 (354)
Q Consensus 190 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~ 269 (354)
... +.+...+..+...+.+.|++++|...++...+... ..+...+..+...+...|+.
T Consensus 141 -~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~ 198 (225)
T 2vq2_A 141 -AAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE--------------------VLQADDLLLGWKIAKALGNA 198 (225)
T ss_dssp -HHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC--------------------SCCHHHHHHHHHHHHHTTCH
T ss_pred -HhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------CCCHHHHHHHHHHHHhcCcH
Confidence 321 22356677788888888888888888888776542 15666777788888899999
Q ss_pred HHHHHHHHHHHHcCcCCCHhhHHH
Q 038758 270 VDALDLLRDVIVANVKPNTVTIVS 293 (354)
Q Consensus 270 ~~a~~~~~~m~~~g~~p~~~t~~~ 293 (354)
++|..+++.+.+. .|+......
T Consensus 199 ~~a~~~~~~~~~~--~p~~~~~~~ 220 (225)
T 2vq2_A 199 QAAYEYEAQLQAN--FPYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHH
Confidence 9999999998754 466554433
No 38
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.47 E-value=2.5e-12 Score=105.29 Aligned_cols=192 Identities=11% Similarity=-0.062 Sum_probs=163.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...|.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 67888889999999999999999998864 3456778888999999999999999999998875 556778899999999
Q ss_pred hcCChhHHHHHHHhhcc------ccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHH
Q 038758 112 KCGRMEITSGLFEEMDQ------DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTN 182 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 182 (354)
..|++++|.+.|++... +...+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|.+
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998732 345677888999999999999999988753 356788889999999999999999
Q ss_pred HHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhc
Q 038758 183 LLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH 228 (354)
Q Consensus 183 ~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 228 (354)
.++... . ..+.+...+..+...+.+.|+.++|...++.+.+..
T Consensus 197 ~~~~~~--~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 197 YYDLFA--Q-GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHH--T-TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHH--H-hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999986 3 233455667788888899999999999999888764
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.46 E-value=1.2e-12 Score=108.56 Aligned_cols=240 Identities=8% Similarity=-0.059 Sum_probs=179.3
Q ss_pred hhhHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCCh
Q 038758 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY 81 (354)
Q Consensus 2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 81 (354)
++|...++.+++.+..+++.... +|..+...+...|++++|...|++..+.+ +.+...|..+...+...|++
T Consensus 22 ~~A~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 22 EVILARMEQILASRALTDDERAQ-------LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhcccccCchhHH-------HHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 56778888888764322222111 67888899999999999999999998864 34677899999999999999
Q ss_pred hhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh---ccccchhhHHHHHHHhcCchhHHHHHhccCCC
Q 038758 82 RVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM---DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158 (354)
Q Consensus 82 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 158 (354)
++|.+.++...+.. +.+...+..+..+|...|++++|.+.|++. .|+.......+..+...|++++|...+++...
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999999999875 556888999999999999999999999998 45544455556666778999999999966542
Q ss_pred --CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCC--CCC-cchHHHHHHHhhhhcCccccchhhhHhhhhcccccc
Q 038758 159 --KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDM--QPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST 233 (354)
Q Consensus 159 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 233 (354)
|+......+...+...++.++|.+.++... .... .|+ ...+..+...+.+.|++++|...++...+..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----- 245 (275)
T 1xnf_A 173 KSDKEQWGWNIVEFYLGNISEQTLMERLKADA--TDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN----- 245 (275)
T ss_dssp HSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHC--CSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----
T ss_pred cCCcchHHHHHHHHHHHhcCHHHHHHHHHHHh--cccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----
Confidence 333333347777788888899999998886 3221 111 4677888888999999999999988877653
Q ss_pred ccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 038758 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL 276 (354)
Q Consensus 234 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 276 (354)
|+ .+.....++...|++++|++.+
T Consensus 246 -----------------p~--~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 -----------------VH--NFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -----------------CT--TCHHHHHHHHHHHHHHHC----
T ss_pred -----------------ch--hHHHHHHHHHHHHHHHhhHHHH
Confidence 22 1334455677788888887766
No 40
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.45 E-value=8.2e-13 Score=107.41 Aligned_cols=198 Identities=11% Similarity=0.049 Sum_probs=114.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+...+..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 44555555556666666666666655532 2234445555555555666666666666555443 334444555555555
Q ss_pred hcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhh
Q 038758 112 KCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 191 (354)
..|++++|.+.+++.. +....+...+..+...+.+.|++++|.+.++++. .
T Consensus 103 ~~~~~~~A~~~~~~~~---------------------------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~--~ 153 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKAL---------------------------RAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAV--E 153 (243)
T ss_dssp HTTCHHHHHHHHHHHH---------------------------HHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHH--H
T ss_pred HhccHHHHHHHHHHHH---------------------------HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH--H
Confidence 5555555555544430 0012345567777778888888888888888775 2
Q ss_pred cCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHH
Q 038758 192 TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVD 271 (354)
Q Consensus 192 ~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 271 (354)
. .+.+...+..+...+.+.|++++|...++...+.. +.+..+|..+...|.+.|++++
T Consensus 154 ~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------------------~~~~~~~~~la~~~~~~~~~~~ 211 (243)
T 2q7f_A 154 L-NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD---------------------PGHADAFYNAGVTYAYKENREK 211 (243)
T ss_dssp H-CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHTTCTTH
T ss_pred h-CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------cccHHHHHHHHHHHHHccCHHH
Confidence 2 22345567777777788888888888877776654 3356678888888899999999
Q ss_pred HHHHHHHHHHc
Q 038758 272 ALDLLRDVIVA 282 (354)
Q Consensus 272 a~~~~~~m~~~ 282 (354)
|...+++..+.
T Consensus 212 A~~~~~~~~~~ 222 (243)
T 2q7f_A 212 ALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcc
Confidence 99999988764
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.45 E-value=3.1e-12 Score=102.55 Aligned_cols=156 Identities=8% Similarity=-0.079 Sum_probs=115.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhcc-CChhhHHHHHHHHHHhccCC-CceehhhHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL-KDYRVGKDVYDYMISIKFEG-NACVKRPLLDL 109 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~ 109 (354)
.|..+...+...|++++|.+.+++..+.. +.+...+..+...+... |++++|.+.++.+.+.+..| +...+..+..+
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 122 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGIC 122 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHH
Confidence 78889999999999999999999998864 34566788899999999 99999999999999832233 25678888899
Q ss_pred HHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC----CChhhhHHHHHHHHhCCChhHHH
Q 038758 110 FIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ----KDLVSWNAMLAGYALGGFREEVT 181 (354)
Q Consensus 110 ~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~ 181 (354)
+...|++++|...|++. +.+...+..+...+.+.|++++|...+++..+ .+...+..+...+...|+.+.+.
T Consensus 123 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 202 (225)
T 2vq2_A 123 SAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAY 202 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 99999999999998876 23345556666666666666666666665532 23444555555556666666666
Q ss_pred HHHHHHH
Q 038758 182 NLLDEME 188 (354)
Q Consensus 182 ~~~~~m~ 188 (354)
.+++.+.
T Consensus 203 ~~~~~~~ 209 (225)
T 2vq2_A 203 EYEAQLQ 209 (225)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.45 E-value=4.4e-12 Score=105.02 Aligned_cols=235 Identities=7% Similarity=-0.098 Sum_probs=154.7
Q ss_pred cccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhc---cccch----hhHHH
Q 038758 65 HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD---QDFLV----NNSLI 137 (354)
Q Consensus 65 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~----~~~li 137 (354)
...+......+...|++++|.+.++...+.. +.+...+..+..+|...|++++|...+++.. ++... |..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3445666777889999999999999998764 4456688889999999999999999988871 22222 56677
Q ss_pred HHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC-cchHHHHHHHhhhhcC
Q 038758 138 DFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN-TISLSGVLAACAQVKG 213 (354)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~~ 213 (354)
..|...|++++|...|++..+ .+...|..+...+...|++++|.+.|++.. .. .|+ ...+..+...+...++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al--~~--~~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI--RP--TTTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC--CS--SCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHh--hc--CCCcHHHHHHHHHHHHHHHH
Confidence 777777777777777776543 344567777777777777777777777665 22 333 3334444413333446
Q ss_pred ccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-cCCCHh
Q 038758 214 VKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ---VVDALDLLRDVIVAN-VKPNTV 289 (354)
Q Consensus 214 ~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g-~~p~~~ 289 (354)
+++|...++...+.. +.+...+..+...+...|+ .++|...|++..+.. -.|+..
T Consensus 158 ~~~A~~~~~~a~~~~---------------------p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 216 (272)
T 3u4t_A 158 YVKADSSFVKVLELK---------------------PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY 216 (272)
T ss_dssp HHHHHHHHHHHHHHS---------------------TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG
T ss_pred HHHHHHHHHHHHHhC---------------------ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc
Confidence 666666666665543 2234555556666666666 666777666665431 112211
Q ss_pred hHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC--CCc
Q 038758 290 TIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH--KNL 343 (354)
Q Consensus 290 t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~ 343 (354)
-.. -..+|..+...|.+.|++++|.+.+++..+ |+.
T Consensus 217 -~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 217 -KDE-----------------LIEANEYIAYYYTINRDKVKADAAWKNILALDPTN 254 (272)
T ss_dssp -HHH-----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred -hHH-----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccH
Confidence 000 123578889999999999999999998876 543
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.44 E-value=5.1e-13 Score=108.63 Aligned_cols=155 Identities=11% Similarity=0.113 Sum_probs=118.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...+.
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 136 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLV 136 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 78888999999999999999999998864 3466778888999999999999999999999875 556778888999999
Q ss_pred hcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHH
Q 038758 112 KCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLL 184 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~ 184 (354)
..|++++|...+++. +.+...+..+...+.+.|++++|...|++..+ .+..++..+...+.+.|++++|.+.+
T Consensus 137 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 216 (243)
T 2q7f_A 137 KLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEML 216 (243)
T ss_dssp HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 999999999998886 33444555666666666666666666655432 23445566666666666666666666
Q ss_pred HHHH
Q 038758 185 DEME 188 (354)
Q Consensus 185 ~~m~ 188 (354)
++..
T Consensus 217 ~~~~ 220 (243)
T 2q7f_A 217 DKAI 220 (243)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6664
No 44
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.44 E-value=1e-12 Score=115.77 Aligned_cols=268 Identities=12% Similarity=-0.003 Sum_probs=201.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCc-----ccHHHHHHHHhccCChhhHHHHHHHHHHhc-----cCCCce
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH-----FVCPKVYKACSELKDYRVGKDVYDYMISIK-----FEGNAC 101 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~ 101 (354)
.+..+-..+...|++++|...|++..+.+ |+. ..+..+...+...|++++|.+.++...+.. .+....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 45567778899999999999999998863 433 367888888999999999999999987651 133456
Q ss_pred ehhhHHHHHHhcCChhHHHHHHHhh----------ccccchhhHHHHHHHhcCc-----------------hhHHHHHhc
Q 038758 102 VKRPLLDLFIKCGRMEITSGLFEEM----------DQDFLVNNSLIDFYAKCRY-----------------LKVSHCKFS 154 (354)
Q Consensus 102 ~~~~li~~~~~~g~~~~a~~~~~~~----------~~~~~~~~~li~~~~~~~~-----------------~~~a~~~~~ 154 (354)
++..+...|...|++++|.+.+++. +....++..+...|...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7888999999999999999999987 2234477888899999999 999988887
Q ss_pred cCCC-----C----ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC----cchHHHHHHHhhhhcCccccchhh
Q 038758 155 KIKQ-----K----DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN----TISLSGVLAACAQVKGVKLGKAIH 221 (354)
Q Consensus 155 ~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~ 221 (354)
+..+ . ...++..+...+...|++++|.+.+++..+.... .++ ...+..+...+...|++++|...+
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE-FGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 6542 1 2346788888999999999999999988621111 111 236778888899999999999998
Q ss_pred hHhhhhccccccccchhHHHHHHhcccCC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcC-CCHhhHHHHHHHh
Q 038758 222 GYVLRHHIHLSTACGFVICSCSVFNQLST--RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK-PNTVTIVSVLPAC 298 (354)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~li~~~ 298 (354)
+...+.... ... ....++..+...+...|++++|...+++..+..-. ++..
T Consensus 287 ~~al~~~~~-----------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------- 340 (411)
T 4a1s_A 287 KRTLALAVE-----------------LGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI--------- 340 (411)
T ss_dssp HHHHHHHHH-----------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH---------
T ss_pred HHHHHHHHH-----------------cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH---------
Confidence 877665431 001 12456778889999999999999999998753111 1111
Q ss_pred hccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCC
Q 038758 299 LKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339 (354)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (354)
....++..+...|.+.|++++|.+.+++..
T Consensus 341 -----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 341 -----------GEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp -----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 012347778888889999999988888765
No 45
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.44 E-value=1.8e-12 Score=103.80 Aligned_cols=189 Identities=10% Similarity=-0.026 Sum_probs=148.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|..+-..+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...++...+.. +.+...+..+..++.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 46677788899999999999999998864 3466678888899999999999999999999875 556778999999999
Q ss_pred hc-----------CChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CChhhhHHHHHHHHhC
Q 038758 112 KC-----------GRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSWNAMLAGYALG 174 (354)
Q Consensus 112 ~~-----------g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~ 174 (354)
.. |++++|...|++. +.+...+..+...|...|++++|+..|++..+ .+...+..+...+...
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~ 164 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSM 164 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHc
Confidence 99 9999999999987 44567888999999999999999999987643 5667788899999999
Q ss_pred CChhHHHHHHHHHHhhhcCCCC-CcchHHHHHHHhhhhcCccccchhhhHhhh
Q 038758 175 GFREEVTNLLDEMEMIQTDMQP-NTISLSGVLAACAQVKGVKLGKAIHGYVLR 226 (354)
Q Consensus 175 ~~~~~a~~~~~~m~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 226 (354)
|++++|...|+... . ..| +...+..+...+.+.|+.++|...++....
T Consensus 165 g~~~~A~~~~~~al--~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 165 GRLDEALAQYAKAL--E--QAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp TCHHHHHHHHHHHH--H--HSTTCHHHHHHHHHHHTC----------------
T ss_pred CCHHHHHHHHHHHH--H--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999987 3 234 456677888889999999999988876543
No 46
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.42 E-value=1.7e-12 Score=110.47 Aligned_cols=269 Identities=11% Similarity=0.026 Sum_probs=199.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCcCC-----cccHHHHHHHHhccCChhhHHHHHHHHHHhc----cC-CCcee
Q 038758 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPD-----HFVCPKVYKACSELKDYRVGKDVYDYMISIK----FE-GNACV 102 (354)
Q Consensus 33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~-~~~~~ 102 (354)
+...-..+...|++++|...|++..+.+ |+ ...+..+...+...|+++.|.+.++...+.. .. ....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3445667889999999999999998863 43 3567788889999999999999999876541 11 23557
Q ss_pred hhhHHHHHHhcCChhHHHHHHHhh----cc------ccchhhHHHHHHHhcCc--------------------hhHHHHH
Q 038758 103 KRPLLDLFIKCGRMEITSGLFEEM----DQ------DFLVNNSLIDFYAKCRY--------------------LKVSHCK 152 (354)
Q Consensus 103 ~~~li~~~~~~g~~~~a~~~~~~~----~~------~~~~~~~li~~~~~~~~--------------------~~~a~~~ 152 (354)
+..+...+...|++++|...+++. +. ...++..+...|...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 888899999999999999999987 11 13377888899999999 8999888
Q ss_pred hccCCC-----C----ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCC---CCCcchHHHHHHHhhhhcCccccchh
Q 038758 153 FSKIKQ-----K----DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDM---QPNTISLSGVLAACAQVKGVKLGKAI 220 (354)
Q Consensus 153 ~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~p~~~t~~~ll~~~~~~~~~~~a~~~ 220 (354)
+++... + ....+..+...+...|++++|.+.+++..+..... .....++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 876542 1 23467788888999999999999999875211111 11123677788888999999999998
Q ss_pred hhHhhhhccccccccchhHHHHHHhcccCCC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcC-CCHhhHHHHHHH
Q 038758 221 HGYVLRHHIHLSTACGFVICSCSVFNQLSTR--DVVVWNSIISAFVRSGQVVDALDLLRDVIVANVK-PNTVTIVSVLPA 297 (354)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~li~~ 297 (354)
++...+.... ...+ ...++..+...+...|++++|...+++..+..-. ++..
T Consensus 246 ~~~al~~~~~-----------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-------- 300 (338)
T 3ro2_A 246 YKKTLLLARQ-----------------LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI-------- 300 (338)
T ss_dssp HHHHHHHHHH-----------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH--------
T ss_pred HHHHHHHHHh-----------------hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH--------
Confidence 8877654331 0011 1456778888999999999999999988753211 1111
Q ss_pred hhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 298 CLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
....++..+...|.+.|++++|.+.+++..+
T Consensus 301 ------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 301 ------------GEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp ------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 1123477889999999999999999987643
No 47
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.41 E-value=1.5e-10 Score=104.53 Aligned_cols=295 Identities=11% Similarity=-0.015 Sum_probs=181.4
Q ss_pred hHHHHHHHHHh----cCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhc----cCChhhHHHHHHHHHHhccCCCceeh
Q 038758 32 NWTSMMGMYNV----LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSE----LKDYRVGKDVYDYMISIKFEGNACVK 103 (354)
Q Consensus 32 ~y~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~ 103 (354)
.+..|-..|.. .+++++|.+.|++..+.| +...+..|-..|.. .+++++|.+.|+...+.| +...+
T Consensus 77 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 150 (490)
T 2xm6_A 77 AEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQ 150 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44455555555 677777777777776654 34445555555555 567777777777776654 34456
Q ss_pred hhHHHHHHh----cCChhHHHHHHHhh--ccccchhhHHHHHHHh----cCchhHHHHHhccCCC-CChhhhHHHHHHHH
Q 038758 104 RPLLDLFIK----CGRMEITSGLFEEM--DQDFLVNNSLIDFYAK----CRYLKVSHCKFSKIKQ-KDLVSWNAMLAGYA 172 (354)
Q Consensus 104 ~~li~~~~~----~g~~~~a~~~~~~~--~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~ 172 (354)
..|...|.. .++.++|.+.|++. ..+...+..|...|.. .++.++|.+.|++..+ .+...+..+...|.
T Consensus 151 ~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~ 230 (490)
T 2xm6_A 151 QSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYY 230 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666666665 66777777777766 3345556666666666 6777777777765543 34555666666666
Q ss_pred h----CCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhh----hcCccccchhhhHhhhhcccccc--------cc-
Q 038758 173 L----GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ----VKGVKLGKAIHGYVLRHHIHLST--------AC- 235 (354)
Q Consensus 173 ~----~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~--------~~- 235 (354)
. .+++++|.++|+... ..|. ...+..+-..+.. .++.++|...++...+.+..... ..
T Consensus 231 ~g~g~~~~~~~A~~~~~~a~--~~~~---~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~ 305 (490)
T 2xm6_A 231 FGIGVTQDYTQSRVLFSQSA--EQGN---SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGA 305 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHH--TTTC---HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCB
T ss_pred cCCCCCCCHHHHHHHHHHHH--HCCC---HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC
Confidence 5 667777777777765 4332 2334444444444 56777777777766655432211 22
Q ss_pred ----chhHHHHHHhcccCC-CCcchHHHHHHHHHhcC---CHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhc----cCc
Q 038758 236 ----GFVICSCSVFNQLST-RDVVVWNSIISAFVRSG---QVVDALDLLRDVIVANVKPNTVTIVSVLPACLK----LAA 303 (354)
Q Consensus 236 ----~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~~~ 303 (354)
++.++|...|++... .+...+..+-..|.+.| +.++|++.|++..+.| +...+..+-..|.. .++
T Consensus 306 ~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 382 (490)
T 2xm6_A 306 EGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKD 382 (490)
T ss_dssp TTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 567777777766542 24455666666666655 6777777777777653 34455555555555 455
Q ss_pred ccCc--------cccchhHHHHHHHHHHh----cCChhHHHHHhhcCCC
Q 038758 304 LPQG--------LGTGSFVWNALIDMYGR----CGAIQKSRKIFVLMPH 340 (354)
Q Consensus 304 ~~~~--------~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 340 (354)
.+++ -..+...+..|...|.+ .+++++|.+.|++..+
T Consensus 383 ~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 383 EQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAST 431 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 5444 12245667777777777 7888888888877655
No 48
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.41 E-value=3.8e-12 Score=111.63 Aligned_cols=231 Identities=11% Similarity=0.020 Sum_probs=175.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCC-----cccHHHHHHHHhccCChhhHHHHHHHHHHhc----cC-CCce
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPD-----HFVCPKVYKACSELKDYRVGKDVYDYMISIK----FE-GNAC 101 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~-~~~~ 101 (354)
.+...-..+...|++++|...|++..+.+ |+ ...+..+...+...|+++.|...++...+.. .. ....
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34556677889999999999999998863 33 2467788889999999999999999876542 11 2255
Q ss_pred ehhhHHHHHHhcCChhHHHHHHHhh----c------cccchhhHHHHHHHhcCc--------------------hhHHHH
Q 038758 102 VKRPLLDLFIKCGRMEITSGLFEEM----D------QDFLVNNSLIDFYAKCRY--------------------LKVSHC 151 (354)
Q Consensus 102 ~~~~li~~~~~~g~~~~a~~~~~~~----~------~~~~~~~~li~~~~~~~~--------------------~~~a~~ 151 (354)
++..+...|...|++++|...+++. + ....++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 7888899999999999999999987 1 124477888899999999 898888
Q ss_pred HhccCCC-----C----ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC----cchHHHHHHHhhhhcCccccc
Q 038758 152 KFSKIKQ-----K----DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN----TISLSGVLAACAQVKGVKLGK 218 (354)
Q Consensus 152 ~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~ 218 (354)
.+++... + ...++..+...+...|++++|.+.+++..+.... .++ ..++..+...+...|++++|.
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 8876542 1 2346788888999999999999999988621111 111 236778888899999999999
Q ss_pred hhhhHhhhhccccccccchhHHHHHHhcccCCC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038758 219 AIHGYVLRHHIHLSTACGFVICSCSVFNQLSTR--DVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282 (354)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (354)
..++...+..... ..+ ...++..+...|.+.|++++|...+++..+.
T Consensus 248 ~~~~~al~~~~~~-----------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 248 EYYKKTLLLARQL-----------------KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHHHHHHHHHHT-----------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-----------------cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 9988776553310 011 1456788889999999999999999988653
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.41 E-value=1.3e-11 Score=107.07 Aligned_cols=230 Identities=8% Similarity=-0.052 Sum_probs=182.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCC-hhhHHHHHHHHHHhccCCCceehhhHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD-YRVGKDVYDYMISIKFEGNACVKRPLLDLF 110 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 110 (354)
.|+.+-..+.+.|++++|+..+++..+.. +-+...|+.+...+...|+ +++|.+.|+...+.. +-+...|..+..++
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 78888888999999999999999999864 2345668888889999996 999999999999876 66788999999999
Q ss_pred HhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHh-CCChhHH--
Q 038758 111 IKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYAL-GGFREEV-- 180 (354)
Q Consensus 111 ~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~-~~~~~~a-- 180 (354)
...|++++|...|++. +.+...|..+..++.+.|++++|+..|+++.+ | +...|+.+...+.+ .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~ 256 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVL 256 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHH
Confidence 9999999999999998 55778899999999999999999999998874 3 56789999999998 6665887
Q ss_pred ---HHHHHHHHhhhcCCCCC-cchHHHHHHHhhhhc--CccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcc
Q 038758 181 ---TNLLDEMEMIQTDMQPN-TISLSGVLAACAQVK--GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVV 254 (354)
Q Consensus 181 ---~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 254 (354)
++.|+... . +.|+ ...|..+...+.+.| +.+++...+..+ +.. ..+..
T Consensus 257 ~~el~~~~~Al--~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~---------------------p~~~~ 310 (382)
T 2h6f_A 257 EREVQYTLEMI--K--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS---------------------HSSPY 310 (382)
T ss_dssp HHHHHHHHHHH--H--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT---------------------CCCHH
T ss_pred HHHHHHHHHHH--H--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC---------------------CCCHH
Confidence 47787776 2 3454 456777777777766 466666665554 221 34567
Q ss_pred hHHHHHHHHHhcC---------CHHHHHHHHHHH-HHcCcCCCHhhH
Q 038758 255 VWNSIISAFVRSG---------QVVDALDLLRDV-IVANVKPNTVTI 291 (354)
Q Consensus 255 ~~~~li~~~~~~g---------~~~~a~~~~~~m-~~~g~~p~~~t~ 291 (354)
.+..+...|.+.| ..++|+++|+++ .+ +.|...-|
T Consensus 311 al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~ 355 (382)
T 2h6f_A 311 LIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKEY 355 (382)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHH
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHHH
Confidence 7888888888874 358999999998 54 35655443
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.37 E-value=4.7e-11 Score=99.00 Aligned_cols=218 Identities=10% Similarity=-0.035 Sum_probs=175.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhc----cCChhhHHHHHHHHHHhccCCCceehhhHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSE----LKDYRVGKDVYDYMISIKFEGNACVKRPLL 107 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 107 (354)
++..+-..+...|++++|.+.|++..+.+ +...+..+...+.. .+++++|.+.|+...+.+ +...+..+.
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 45567777889999999999999998833 44567778888888 999999999999998876 677888899
Q ss_pred HHHHh----cCChhHHHHHHHhh--ccccchhhHHHHHHHh----cCchhHHHHHhccCCC-CChhhhHHHHHHHHh---
Q 038758 108 DLFIK----CGRMEITSGLFEEM--DQDFLVNNSLIDFYAK----CRYLKVSHCKFSKIKQ-KDLVSWNAMLAGYAL--- 173 (354)
Q Consensus 108 ~~~~~----~g~~~~a~~~~~~~--~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~--- 173 (354)
..|.. .+++++|.+.|++. ..+...+..+...|.. .+++++|...|++..+ .+...+..+...|..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~ 161 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRG 161 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCC
Confidence 99999 99999999999987 3456677888888888 9999999999987654 355667777788887
Q ss_pred -CCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhh----hcCccccchhhhHhhhhccccccccchhHHHHHHhccc
Q 038758 174 -GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ----VKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQL 248 (354)
Q Consensus 174 -~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 248 (354)
.+++++|.+.|+... ..+ +...+..+-..+.. .++.++|...++...+.+
T Consensus 162 ~~~~~~~A~~~~~~a~--~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-------------------- 216 (273)
T 1ouv_A 162 TPKDLKKALASYDKAC--DLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-------------------- 216 (273)
T ss_dssp SCCCHHHHHHHHHHHH--HTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--------------------
T ss_pred CCCCHHHHHHHHHHHH--HCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--------------------
Confidence 899999999999887 543 34566666777777 778888888877766643
Q ss_pred CCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 038758 249 STRDVVVWNSIISAFVR----SGQVVDALDLLRDVIVAN 283 (354)
Q Consensus 249 ~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 283 (354)
+...+..+-..|.+ .++.++|.+.|++..+.|
T Consensus 217 ---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 217 ---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp ---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 24567777788888 899999999999998775
No 51
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.37 E-value=2.3e-10 Score=103.27 Aligned_cols=296 Identities=7% Similarity=-0.047 Sum_probs=227.6
Q ss_pred hHHHHHHHHHh----cCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhc----cCChhhHHHHHHHHHHhccCCCceeh
Q 038758 32 NWTSMMGMYNV----LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSE----LKDYRVGKDVYDYMISIKFEGNACVK 103 (354)
Q Consensus 32 ~y~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~ 103 (354)
++..|-..|.. .+++++|...|++..+.| +...+..|-..|.. .++.++|.+.|+...+.| +...+
T Consensus 41 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 41 AQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 55556666666 899999999999998875 45567777777877 889999999999998765 55667
Q ss_pred hhHHHHHHh----cCChhHHHHHHHhh--ccccchhhHHHHHHHh----cCchhHHHHHhccCCC-CChhhhHHHHHHHH
Q 038758 104 RPLLDLFIK----CGRMEITSGLFEEM--DQDFLVNNSLIDFYAK----CRYLKVSHCKFSKIKQ-KDLVSWNAMLAGYA 172 (354)
Q Consensus 104 ~~li~~~~~----~g~~~~a~~~~~~~--~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~ 172 (354)
..|...|.. .+++++|.+.|++. ..+...+..|...|.. .++.++|.+.|++..+ .+...+..+...|.
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~ 194 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYS 194 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 778888888 88999999999987 3455667778888887 7899999999987654 46777888888888
Q ss_pred h----CCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhh----hcCccccchhhhHhhhhcccccc-----------
Q 038758 173 L----GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ----VKGVKLGKAIHGYVLRHHIHLST----------- 233 (354)
Q Consensus 173 ~----~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~----------- 233 (354)
. .+++++|.++|+... ..| +...+..+...+.. .++.++|...++...+.+.....
T Consensus 195 ~g~g~~~~~~~A~~~~~~a~--~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~ 269 (490)
T 2xm6_A 195 RGLGVERNDAISAQWYRKSA--TSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGL 269 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHH--HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTT
T ss_pred cCCCCCcCHHHHHHHHHHHH--HCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
Confidence 7 899999999999987 554 34456666666664 67889999999888776543222
Q ss_pred -ccchhHHHHHHhcccCC-CCcchHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccC---c
Q 038758 234 -ACGFVICSCSVFNQLST-RDVVVWNSIISAFVRS-----GQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLA---A 303 (354)
Q Consensus 234 -~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~---~ 303 (354)
..++.++|...|++... .+...+..+-..|... ++.++|...|++..+.| +...+..+-..+...| +
T Consensus 270 ~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~ 346 (490)
T 2xm6_A 270 AGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEE 346 (490)
T ss_dssp TSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCccc
Confidence 26889999999988754 3556677777888877 89999999999998875 3344555555555444 3
Q ss_pred ccCc--------cccchhHHHHHHHHHHh----cCChhHHHHHhhcCCCC
Q 038758 304 LPQG--------LGTGSFVWNALIDMYGR----CGAIQKSRKIFVLMPHK 341 (354)
Q Consensus 304 ~~~~--------~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 341 (354)
.+.+ -..+...+..|...|.. .+++++|.+.|++..+.
T Consensus 347 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 347 HKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 4443 22467788889899988 89999999999987653
No 52
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.35 E-value=2.5e-12 Score=108.47 Aligned_cols=227 Identities=11% Similarity=0.039 Sum_probs=160.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhc------c-C
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-------GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIK------F-E 97 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------~-~ 97 (354)
+|..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|.+.++...+.. - +
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 6788899999999999999999998874 223345568888889999999999999999988652 1 2
Q ss_pred CCceehhhHHHHHHhcCChhHHHHHHHhhc------------cccchhhHHHHHHHhcCchhHHHHHhccCCC-------
Q 038758 98 GNACVKRPLLDLFIKCGRMEITSGLFEEMD------------QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ------- 158 (354)
Q Consensus 98 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~------------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------- 158 (354)
....++..+...|...|++++|.+.|++.. .....+..+...|...|++++|...|++..+
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 245678889999999999999999999871 1234567788889999999999988876642
Q ss_pred C----ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhc-------CCCCCcchHHHHHHHhh-------hhcCccccchh
Q 038758 159 K----DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQT-------DMQPNTISLSGVLAACA-------QVKGVKLGKAI 220 (354)
Q Consensus 159 ~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-------~~~p~~~t~~~ll~~~~-------~~~~~~~a~~~ 220 (354)
+ ...++..+...+.+.|++++|.+.++++. .. ...+...........+. ..+.+..+...
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL--TRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 1 23457778888999999999999998886 31 22233322222222222 22334444444
Q ss_pred hhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038758 221 HGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281 (354)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (354)
+....... ..+..+|..+...|.+.|++++|.+.|++..+
T Consensus 267 ~~~~~~~~---------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 267 YKACKVDS---------------------PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -------C---------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhcCCCC---------------------chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 43333221 22456788899999999999999999998875
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.33 E-value=3.4e-11 Score=104.51 Aligned_cols=223 Identities=10% Similarity=0.046 Sum_probs=177.6
Q ss_pred ccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCC-hhHHHHHHHhh----ccccchhhHHHHHH
Q 038758 66 FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR-MEITSGLFEEM----DQDFLVNNSLIDFY 140 (354)
Q Consensus 66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~----~~~~~~~~~li~~~ 140 (354)
..|..+...+...|++++|.+.++...+.. +-+...|+.+..++...|+ +++|+..|++. +.+...|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 356777788889999999999999999875 5677889999999999997 99999999998 55678999999999
Q ss_pred HhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCC-CcchHHHHHHHhhh-hcCcc
Q 038758 141 AKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP-NTISLSGVLAACAQ-VKGVK 215 (354)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~t~~~ll~~~~~-~~~~~ 215 (354)
.+.|++++|+..|++... .+...|..+..++.+.|++++|++.|+.+. .. .| +...|+.+..++.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al--~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLL--KE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH--HH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHH--Hh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999998874 466789999999999999999999999997 32 34 46678888888888 55546
Q ss_pred ccc-----hhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcC--CHHHHHHHHHHHHHcCcCCCH
Q 038758 216 LGK-----AIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSG--QVVDALDLLRDVIVANVKPNT 288 (354)
Q Consensus 216 ~a~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~ 288 (354)
+|. ..+....+.. +.+...|+.+...+.+.| +.++|++.++++ + ..|+.
T Consensus 253 eA~~~~el~~~~~Al~l~---------------------P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~ 308 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV---------------------PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSS 308 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS---------------------TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCC
T ss_pred HHHHHHHHHHHHHHHHHC---------------------CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCC
Confidence 663 5565555543 346678988888888888 689999999887 2 24443
Q ss_pred hhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcC---------ChhHHHHHhhcC-CC
Q 038758 289 VTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCG---------AIQKSRKIFVLM-PH 340 (354)
Q Consensus 289 ~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---------~~~~A~~~~~~m-~~ 340 (354)
. ..+..+...|.+.| .+++|.+++++. .+
T Consensus 309 ~-----------------------~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 309 P-----------------------YLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp H-----------------------HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred H-----------------------HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 2 23667777777764 358899999998 55
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.32 E-value=2e-10 Score=95.15 Aligned_cols=219 Identities=10% Similarity=-0.061 Sum_probs=169.1
Q ss_pred CcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHh----cCChhHHHHHHHhh--ccccchhhHHH
Q 038758 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIK----CGRMEITSGLFEEM--DQDFLVNNSLI 137 (354)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~--~~~~~~~~~li 137 (354)
+...+..+...+...|++++|.+.|+...+. .+...+..+...|.. .+++++|.+.|++. ..+...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4456777778888999999999999999873 345678889999999 99999999999987 34667778888
Q ss_pred HHHHh----cCchhHHHHHhccCCC-CChhhhHHHHHHHHh----CCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHh
Q 038758 138 DFYAK----CRYLKVSHCKFSKIKQ-KDLVSWNAMLAGYAL----GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208 (354)
Q Consensus 138 ~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~ 208 (354)
..|.. .+++++|...|++..+ .+...+..+...|.. .+++++|.+.|+... ..+ +...+..+-..+
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~--~~~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC--DLN---DGDGCTILGSLY 156 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH--HTT---CHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH--hcC---cHHHHHHHHHHH
Confidence 89999 9999999999987754 466778888888998 999999999999987 554 445566666666
Q ss_pred hh----hcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 038758 209 AQ----VKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVR----SGQVVDALDLLRDVI 280 (354)
Q Consensus 209 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~ 280 (354)
.. .++.++|...++...+.+ +...+..+-..|.. .+++++|+..|++..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~~-----------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 213 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDLK-----------------------DSPGCFNAGNMYHHGEGATKNFKEALARYSKAC 213 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT-----------------------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCC-----------------------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence 66 777778877777666543 34667788888888 999999999999998
Q ss_pred HcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHh----cCChhHHHHHhhcCCC
Q 038758 281 VANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGR----CGAIQKSRKIFVLMPH 340 (354)
Q Consensus 281 ~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 340 (354)
+.+ | ... +..+...|.+ .|++++|.+.|++..+
T Consensus 214 ~~~--~-~~a------------------------~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 214 ELE--N-GGG------------------------CFNLGAMQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HTT--C-HHH------------------------HHHHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred hCC--C-HHH------------------------HHHHHHHHHcCCCcccCHHHHHHHHHHHHH
Confidence 764 2 333 4445555555 6666666666665544
No 55
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.31 E-value=3.1e-10 Score=103.46 Aligned_cols=105 Identities=10% Similarity=-0.045 Sum_probs=51.8
Q ss_pred ccchhHHHHHHhcccC--CCCc--chHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCC-HhhHHHHHH-HhhccCcccCc
Q 038758 234 ACGFVICSCSVFNQLS--TRDV--VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN-TVTIVSVLP-ACLKLAALPQG 307 (354)
Q Consensus 234 ~~~~~~~a~~~~~~~~--~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~-~~~~~~~~~~~ 307 (354)
+.|++++|..+|++.. .|+. ..|..++..+.+.|+.++|.++|++..+. .|+ ...|..... .+...|+.+.+
T Consensus 333 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp HTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred hcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHH
Confidence 4455555555555543 2221 24555555555555666666666555533 222 111111111 11234444443
Q ss_pred ---------ccc-chhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 308 ---------LGT-GSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 308 ---------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
..| +...|..++..+.+.|+.++|..+|++...
T Consensus 411 ~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 411 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 223 456666666666666777777776666543
No 56
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.30 E-value=1.9e-10 Score=97.27 Aligned_cols=110 Identities=11% Similarity=0.079 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHhCCCcCCcccHHHHHHHHhc-------cCCh-------hhHHHHHHHHHHhccCCCceehhhHHHHHHh
Q 038758 47 EEIVNLFYLMIDKGVRPDHFVCPKVYKACSE-------LKDY-------RVGKDVYDYMISIKFEGNACVKRPLLDLFIK 112 (354)
Q Consensus 47 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-------~~~~-------~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 112 (354)
++|..+|++..... +-+...|..+...+.. .|++ ++|..+|+...+.-.+-+...|..+...+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56667777776642 3344456666655542 3664 6777777776652113344466677777777
Q ss_pred cCChhHHHHHHHhh---ccc-cc-hhhHHHHHHHhcCchhHHHHHhccCC
Q 038758 113 CGRMEITSGLFEEM---DQD-FL-VNNSLIDFYAKCRYLKVSHCKFSKIK 157 (354)
Q Consensus 113 ~g~~~~a~~~~~~~---~~~-~~-~~~~li~~~~~~~~~~~a~~~~~~~~ 157 (354)
.|++++|.++|++. .|+ .. +|..+...+.+.|++++|..+|++..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 161 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 161 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 77777777777765 222 22 45555555555555555555555443
No 57
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.29 E-value=5.2e-11 Score=103.95 Aligned_cols=294 Identities=8% Similarity=-0.007 Sum_probs=192.8
Q ss_pred hhhHHHHHHHHHhccc----cchhhhhhHhhhhhhHHHHHHHHHhcC-----ChhHHHHHHHHHHhCCCcCCc----ccH
Q 038758 2 ELGIQVHAHLIVCGVE----LCAFLGSQLLEVFCNWTSMMGMYNVLG-----YYEEIVNLFYLMIDKGVRPDH----FVC 68 (354)
Q Consensus 2 ~~a~~~~~~~~~~g~~----~~~~~~~~li~~~~~y~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~p~~----~~~ 68 (354)
++|..+.+++.+.--. ++...|-.++.. .|..++..+.... ......+.++.+.......+. ..+
T Consensus 29 ~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~--r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 106 (383)
T 3ulq_A 29 PDAEYLRREIKQELDQMEEDQDLHLYYSLMEF--RHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFN 106 (383)
T ss_dssp HHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHH--HHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHHH--HHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHHHHHH
Confidence 4677777777665322 223332333322 4444444444333 111222666665442211111 011
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhcc-CC----CceehhhHHHHHHhcCChhHHHHHHHhh----c-------cccch
Q 038758 69 PKVYKACSELKDYRVGKDVYDYMISIKF-EG----NACVKRPLLDLFIKCGRMEITSGLFEEM----D-------QDFLV 132 (354)
Q Consensus 69 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~----~-------~~~~~ 132 (354)
......+...|++++|.+.++...+.-- .+ ...++..+..+|...|+++.|...+++. + ....+
T Consensus 107 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 186 (383)
T 3ulq_A 107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQC 186 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence 1244556788999999999999986511 12 3457888999999999999999999887 1 12346
Q ss_pred hhHHHHHHHhcCchhHHHHHhccCCC-----CC----hhhhHHHHHHHHhCCChhHHHHHHHHHHhh--hcCC-CCCcch
Q 038758 133 NNSLIDFYAKCRYLKVSHCKFSKIKQ-----KD----LVSWNAMLAGYALGGFREEVTNLLDEMEMI--QTDM-QPNTIS 200 (354)
Q Consensus 133 ~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~-~p~~~t 200 (354)
++.+...|...|++++|...|++..+ ++ ..++..+...|...|++++|.+.+++.... ..+. +....+
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 266 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQA 266 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 77888999999999999999987653 12 246888999999999999999999988610 1133 333567
Q ss_pred HHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCC-CcchHHHHHHHHHhcCC---HHHHHHHH
Q 038758 201 LSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTR-DVVVWNSIISAFVRSGQ---VVDALDLL 276 (354)
Q Consensus 201 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g~---~~~a~~~~ 276 (354)
+..+...+.+.|++++|...++...+.... ...| ....++.+-..+...|+ ..+|+.++
T Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~ 329 (383)
T 3ulq_A 267 YFLITQIHYKLGKIDKAHEYHSKGMAYSQK-----------------AGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFL 329 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------HTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----------------cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 888888999999999999998877654321 1111 12235667777888888 77777777
Q ss_pred HHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 277 RDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 277 ~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
++. +..|+.. .++..+...|.+.|++++|.+.+++..+
T Consensus 330 ~~~---~~~~~~~-----------------------~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 330 ESK---MLYADLE-----------------------DFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHT---TCHHHHH-----------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHC---cCHHHHH-----------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 665 2233222 2367788899999999999998886543
No 58
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.29 E-value=3.8e-11 Score=101.18 Aligned_cols=236 Identities=12% Similarity=0.068 Sum_probs=157.1
Q ss_pred CcccHHHHHHHHhccCChhhHHHHHHHHHHh-------ccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHH
Q 038758 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISI-------KFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSL 136 (354)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~l 136 (354)
+...+..+...+...|++++|..+++.+.+. ..+....++..+...|...|++++|...+++.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a---------- 95 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDA---------- 95 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH----------
Confidence 3445777888888999999999999998874 22334566788888888899999998887763
Q ss_pred HHHHHhcCchhHHHHHhccC--C--CCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhc----CCCC-CcchHHHHHHH
Q 038758 137 IDFYAKCRYLKVSHCKFSKI--K--QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQT----DMQP-NTISLSGVLAA 207 (354)
Q Consensus 137 i~~~~~~~~~~~a~~~~~~~--~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~~~p-~~~t~~~ll~~ 207 (354)
.++++.. . .....++..+...+...|++++|.+.+++...... +-.| ....+..+...
T Consensus 96 -------------l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 162 (311)
T 3nf1_A 96 -------------LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALL 162 (311)
T ss_dssp -------------HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 2232222 1 12345677788888888888888888887762110 2222 34556777777
Q ss_pred hhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 038758 208 CAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLS----TRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA- 282 (354)
Q Consensus 208 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 282 (354)
+...|++++|...++...+... ... .....++..+...|...|++++|...++++.+.
T Consensus 163 ~~~~~~~~~A~~~~~~a~~~~~-----------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 163 CQNQGKYEEVEYYYQRALEIYQ-----------------TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHH-----------------HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHH-----------------HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8888888888888877665411 110 113456888899999999999999999998753
Q ss_pred ------CcCCCHhhHHHHHHHhhc-------cCcccCc----------cccchhHHHHHHHHHHhcCChhHHHHHhhcCC
Q 038758 283 ------NVKPNTVTIVSVLPACLK-------LAALPQG----------LGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339 (354)
Q Consensus 283 ------g~~p~~~t~~~li~~~~~-------~~~~~~~----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (354)
...|...........+.. .+.+..+ ...+..++..+...|.+.|++++|.+.|++..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 226 HEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp HHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 222333222223333322 2222222 12346788999999999999999999998754
No 59
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.28 E-value=2e-09 Score=104.37 Aligned_cols=166 Identities=11% Similarity=0.104 Sum_probs=114.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
+|..+-.++...|++++|.+.|.+. -|...|..++..+.+.|++++|.+.+....+.. +++...+.++.+|+
T Consensus 1107 vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYA 1178 (1630)
T 1xi4_A 1107 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALA 1178 (1630)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHH
Confidence 7888888888888888888888553 356667778888888888888888887766543 44444445888888
Q ss_pred hcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhh
Q 038758 112 KCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQ 191 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 191 (354)
+.+++++...+.. .++...|..+...|...|++++|...|... ..|..+...+++.|++++|.+.+++..
T Consensus 1179 Kl~rleele~fI~--~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA~--- 1248 (1630)
T 1xi4_A 1179 KTNRLAELEEFIN--GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKAN--- 1248 (1630)
T ss_pred hhcCHHHHHHHHh--CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHhC---
Confidence 8888776555443 233445556777777888888888888774 377777888888888888877777664
Q ss_pred cCCCCCcchHHHHHHHhhhhcCccccchh
Q 038758 192 TDMQPNTISLSGVLAACAQVKGVKLGKAI 220 (354)
Q Consensus 192 ~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 220 (354)
+..+|..+-.+|...|++..|...
T Consensus 1249 -----n~~aWkev~~acve~~Ef~LA~~c 1272 (1630)
T 1xi4_A 1249 -----STRTWKEVCFACVDGKEFRLAQMC 1272 (1630)
T ss_pred -----CHHHHHHHHHHHhhhhHHHHHHHH
Confidence 334555555555555554444443
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.27 E-value=2.4e-10 Score=96.62 Aligned_cols=92 Identities=12% Similarity=0.173 Sum_probs=73.7
Q ss_pred hHHHHHHHHHh-------cCCh-------hHHHHHHHHHHhCCCcCC-cccHHHHHHHHhccCChhhHHHHHHHHHHhcc
Q 038758 32 NWTSMMGMYNV-------LGYY-------EEIVNLFYLMIDKGVRPD-HFVCPKVYKACSELKDYRVGKDVYDYMISIKF 96 (354)
Q Consensus 32 ~y~~li~~~~~-------~~~~-------~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 96 (354)
.|..+...+.. .|++ ++|..+|++..+. +.|+ ...|..+...+...|++++|.++|+...+.
T Consensus 52 ~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-- 128 (308)
T 2ond_A 52 IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-- 128 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--
T ss_pred HHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Confidence 77777777653 4776 8999999999873 2444 447888888889999999999999999874
Q ss_pred CCC-ce-ehhhHHHHHHhcCChhHHHHHHHhh
Q 038758 97 EGN-AC-VKRPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 97 ~~~-~~-~~~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
.|+ .. +|..+...+.+.|++++|..+|++.
T Consensus 129 ~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 129 EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred cccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 454 33 7888999999999999999999886
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.25 E-value=2.9e-11 Score=106.37 Aligned_cols=259 Identities=10% Similarity=0.038 Sum_probs=189.8
Q ss_pred hhhHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhC----C-CcCCcccHHHHHHHHh
Q 038758 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDK----G-VRPDHFVCPKVYKACS 76 (354)
Q Consensus 2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~----~-~~p~~~~~~~ll~~~~ 76 (354)
++|...++..++.+ |+... ... ..|..+...+...|++++|...+++..+. + .+.....+..+...+.
T Consensus 65 ~~A~~~~~~al~~~--~~~~~---~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 137 (411)
T 4a1s_A 65 RAGVAFFQAAIQAG--TEDLR---TLS--AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLK 137 (411)
T ss_dssp HHHHHHHHHHHHHC--CSCHH---HHH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--ccChh---HHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 45677777777753 32110 000 05778888899999999999999988654 1 1234456778888899
Q ss_pred ccCChhhHHHHHHHHHHhc-----cCCCceehhhHHHHHHhcCC-----------------hhHHHHHHHhh--------
Q 038758 77 ELKDYRVGKDVYDYMISIK-----FEGNACVKRPLLDLFIKCGR-----------------MEITSGLFEEM-------- 126 (354)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~~-------- 126 (354)
..|++++|.+.++...+.. .+....++..+...|...|+ +++|.+.+++.
T Consensus 138 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~ 217 (411)
T 4a1s_A 138 VMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG 217 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999987652 12234578889999999999 99999988876
Q ss_pred --ccccchhhHHHHHHHhcCchhHHHHHhccCCC-----CC----hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCC
Q 038758 127 --DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-----KD----LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ 195 (354)
Q Consensus 127 --~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 195 (354)
......+..+...|...|++++|...|++..+ ++ ...+..+...|...|++++|.+.+++.........
T Consensus 218 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 297 (411)
T 4a1s_A 218 DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 12234777888999999999999999987764 12 23688889999999999999999998762111111
Q ss_pred ---CCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHH
Q 038758 196 ---PNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDA 272 (354)
Q Consensus 196 ---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 272 (354)
....++..+...+...|++++|...++...+....... ......++..+...|.+.|++++|
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------------~~~~~~~~~~la~~~~~~g~~~~A 362 (411)
T 4a1s_A 298 EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD---------------RIGEARACWSLGNAHSAIGGHERA 362 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---------------HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC---------------hHHHHHHHHHHHHHHHHhccHHHH
Confidence 11456777888889999999999998877665321000 001234677888999999999999
Q ss_pred HHHHHHHHHc
Q 038758 273 LDLLRDVIVA 282 (354)
Q Consensus 273 ~~~~~~m~~~ 282 (354)
.+.|++..+.
T Consensus 363 ~~~~~~al~~ 372 (411)
T 4a1s_A 363 LKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.25 E-value=2.5e-11 Score=108.92 Aligned_cols=209 Identities=10% Similarity=-0.030 Sum_probs=171.3
Q ss_pred hhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCCh-hhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHH
Q 038758 46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY-RVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFE 124 (354)
Q Consensus 46 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 124 (354)
++++...+++..... +.+...+..+...+...|++ ++|.+.|+...+.. +.+...|..+..+|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666776655432 34667788888899999999 99999999999875 5567889999999999999999999999
Q ss_pred hh---ccccchhhHHHHHHHhc---------CchhHHHHHhccCCC---CChhhhHHHHHHHHhC--------CChhHHH
Q 038758 125 EM---DQDFLVNNSLIDFYAKC---------RYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALG--------GFREEVT 181 (354)
Q Consensus 125 ~~---~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~--------~~~~~a~ 181 (354)
+. .|+...+..+...|... |++++|...|++..+ .+...|..+..+|... |++++|.
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 87 56667888899999999 999999999988763 3567888899999888 9999999
Q ss_pred HHHHHHHhhhcCC--CCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHH
Q 038758 182 NLLDEMEMIQTDM--QPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSI 259 (354)
Q Consensus 182 ~~~~~m~~~~~~~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 259 (354)
+.|++.. .... .-+...|..+..++...|++++|...++...+.. +.+...+..+
T Consensus 242 ~~~~~al--~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---------------------p~~~~a~~~l 298 (474)
T 4abn_A 242 SAYAQAE--KVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD---------------------PAWPEPQQRE 298 (474)
T ss_dssp HHHHHHH--HHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TTCHHHHHHH
T ss_pred HHHHHHH--HhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------CCCHHHHHHH
Confidence 9999997 3211 1367788889999999999999999999888765 3355678888
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 038758 260 ISAFVRSGQVVDALDLLRDV 279 (354)
Q Consensus 260 i~~~~~~g~~~~a~~~~~~m 279 (354)
...+...|++++|++.+.++
T Consensus 299 ~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 299 QQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 88899999999998766554
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.25 E-value=6.6e-11 Score=100.58 Aligned_cols=259 Identities=11% Similarity=0.075 Sum_probs=188.2
Q ss_pred hhhHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCc-CCcccHHHHHHHHh
Q 038758 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDK----GVR-PDHFVCPKVYKACS 76 (354)
Q Consensus 2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-p~~~~~~~ll~~~~ 76 (354)
++|...++...+.. |+... ... ..|..+...+...|++++|.+.+++..+. +-. .....+..+...+.
T Consensus 22 ~~A~~~~~~al~~~--~~~~~---~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 94 (338)
T 3ro2_A 22 RAGVSFFEAAVQVG--TEDLK---TLS--AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK 94 (338)
T ss_dssp HHHHHHHHHHHHHC--CSCHH---HHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC--cccHH---HHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence 46777888877763 33210 000 15778888899999999999999987553 212 22456778888899
Q ss_pred ccCChhhHHHHHHHHHHhccC-CC----ceehhhHHHHHHhcCC--------------------hhHHHHHHHhh-----
Q 038758 77 ELKDYRVGKDVYDYMISIKFE-GN----ACVKRPLLDLFIKCGR--------------------MEITSGLFEEM----- 126 (354)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~--------------------~~~a~~~~~~~----- 126 (354)
..|++++|.+.++...+..-. ++ ..++..+...+...|+ +++|.+.+++.
T Consensus 95 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~ 174 (338)
T 3ro2_A 95 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVT 174 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998765311 22 3378888999999999 99999888876
Q ss_pred -----ccccchhhHHHHHHHhcCchhHHHHHhccCCC-----CC----hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhc
Q 038758 127 -----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-----KD----LVSWNAMLAGYALGGFREEVTNLLDEMEMIQT 192 (354)
Q Consensus 127 -----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 192 (354)
......+..+...+...|++++|...+++..+ ++ ..++..+...+...|++++|.+.+++......
T Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 254 (338)
T 3ro2_A 175 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR 254 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 12234677888999999999999999987753 12 23678888899999999999999998752111
Q ss_pred CC--CC-CcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCH
Q 038758 193 DM--QP-NTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269 (354)
Q Consensus 193 ~~--~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~ 269 (354)
.. .+ ...++..+...+...|++++|...++...+....... ......++..+...|.+.|++
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------------~~~~~~~~~~la~~~~~~g~~ 319 (338)
T 3ro2_A 255 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD---------------RIGEGRACWSLGNAYTALGNH 319 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---------------HHHHHHHHHHHHHHHHHHTCH
T ss_pred hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC---------------cHHHHHHHHHHHHHHHHcCCh
Confidence 11 11 1456777788889999999999988877664321000 001134677888999999999
Q ss_pred HHHHHHHHHHHHc
Q 038758 270 VDALDLLRDVIVA 282 (354)
Q Consensus 270 ~~a~~~~~~m~~~ 282 (354)
++|...+++..+.
T Consensus 320 ~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 320 DQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.25 E-value=1.2e-10 Score=90.31 Aligned_cols=155 Identities=8% Similarity=0.005 Sum_probs=126.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|..+-..|.+.|++++|.+.|++..+.. +-+...+..+...+...|+++.|...+....+.. +.+...+..+...+.
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHH
Confidence 57888888999999999999999988764 3355668888888999999999999999888764 555667778888889
Q ss_pred hcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHH
Q 038758 112 KCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLL 184 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~ 184 (354)
..++++.+...+.+. +.+...+..+...|.+.|++++|++.|++..+ .+..+|..+...|.+.|++++|.+.|
T Consensus 85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 164 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999988886 44566777888888888888888888887653 35667888888888888888888888
Q ss_pred HHHH
Q 038758 185 DEME 188 (354)
Q Consensus 185 ~~m~ 188 (354)
++..
T Consensus 165 ~~al 168 (184)
T 3vtx_A 165 KKAL 168 (184)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 65
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.25 E-value=8.3e-11 Score=103.03 Aligned_cols=283 Identities=10% Similarity=0.044 Sum_probs=198.6
Q ss_pred hhhHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCcC-CcccHHHHHHHHh
Q 038758 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDK----GVRP-DHFVCPKVYKACS 76 (354)
Q Consensus 2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~ 76 (354)
++|...++...+.+ |+... .+. ..|..+...+...|++++|...+++.... +-.| ....+..+...+.
T Consensus 26 ~~A~~~~~~al~~~--~~~~~---~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 98 (406)
T 3sf4_A 26 RAGVSFFEAAVQVG--TEDLK---TLS--AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK 98 (406)
T ss_dssp HHHHHHHHHHHHHC--CSCHH---HHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--cccHH---HHH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 46777777777763 32110 000 15778888999999999999999987543 2122 2446777888899
Q ss_pred ccCChhhHHHHHHHHHHhcc-CCC----ceehhhHHHHHHhcCC--------------------hhHHHHHHHhh-----
Q 038758 77 ELKDYRVGKDVYDYMISIKF-EGN----ACVKRPLLDLFIKCGR--------------------MEITSGLFEEM----- 126 (354)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~--------------------~~~a~~~~~~~----- 126 (354)
..|++++|...++...+... .++ ..++..+...|...|+ +++|.+.+++.
T Consensus 99 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~ 178 (406)
T 3sf4_A 99 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVT 178 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998876521 122 4478888999999999 99999988876
Q ss_pred -----ccccchhhHHHHHHHhcCchhHHHHHhccCCC-----CC----hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhc
Q 038758 127 -----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-----KD----LVSWNAMLAGYALGGFREEVTNLLDEMEMIQT 192 (354)
Q Consensus 127 -----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 192 (354)
+....++..+...|...|++++|...+++..+ ++ ..++..+...+...|++++|...+++......
T Consensus 179 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 258 (406)
T 3sf4_A 179 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR 258 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 12244678888999999999999999987753 22 23788888999999999999999998752111
Q ss_pred --CCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCH
Q 038758 193 --DMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQV 269 (354)
Q Consensus 193 --~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~ 269 (354)
+..+. ..++..+...+...|++++|...+....+....... ......++..+...|.+.|++
T Consensus 259 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------------~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 259 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND---------------RIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------------HHHHHHHHHHHHHHHHHHTCH
T ss_pred hCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC---------------cHHHHHHHHHHHHHHHHcCCH
Confidence 11111 456778888889999999999998877665331000 000145677888899999999
Q ss_pred HHHHHHHHHHHHc----CcCC-CHhhHHHHHHHhhccCcccC
Q 038758 270 VDALDLLRDVIVA----NVKP-NTVTIVSVLPACLKLAALPQ 306 (354)
Q Consensus 270 ~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~~~~~~ 306 (354)
++|.+.+++..+. +-.+ ...++..+...+...|+...
T Consensus 324 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 324 DQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 9999999987653 2112 12344455555555555433
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.24 E-value=7.2e-11 Score=105.99 Aligned_cols=211 Identities=9% Similarity=-0.110 Sum_probs=164.0
Q ss_pred hhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCCh-hHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhcc
Q 038758 81 YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM-EITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSK 155 (354)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 155 (354)
++.+.+.++...+.. +.+...+..+..++...|++ ++|.+.|++. +.+...|..+...|.+.|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455566666544432 44677888999999999999 9999999987 44577899999999999999999999988
Q ss_pred CCC--CChhhhHHHHHHHHhC---------CChhHHHHHHHHHHhhhcCCCC-CcchHHHHHHHhhhh--------cCcc
Q 038758 156 IKQ--KDLVSWNAMLAGYALG---------GFREEVTNLLDEMEMIQTDMQP-NTISLSGVLAACAQV--------KGVK 215 (354)
Q Consensus 156 ~~~--~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~~~p-~~~t~~~ll~~~~~~--------~~~~ 215 (354)
..+ |+...+..+...+... |++++|.+.|++.. .. .| +...+..+..++... |+++
T Consensus 163 al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al--~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV--QM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHH--HH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHH--Hh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 764 7777888888999999 99999999999987 32 34 466788888888887 8888
Q ss_pred ccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHH
Q 038758 216 LGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295 (354)
Q Consensus 216 ~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 295 (354)
+|...++...+..... ..+...|..+...|...|++++|.+.|++..+. .|+..
T Consensus 239 ~A~~~~~~al~~~p~~------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~------ 292 (474)
T 4abn_A 239 QALSAYAQAEKVDRKA------------------SSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWP------ 292 (474)
T ss_dssp HHHHHHHHHHHHCGGG------------------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH------
T ss_pred HHHHHHHHHHHhCCCc------------------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCH------
Confidence 8888888777654200 146788999999999999999999999999865 35432
Q ss_pred HHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCC
Q 038758 296 PACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339 (354)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (354)
..+..+...+...|++++|.+.++++.
T Consensus 293 -----------------~a~~~l~~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 293 -----------------EPQQREQQLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 235566667777777777777666554
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.22 E-value=1.4e-10 Score=90.06 Aligned_cols=172 Identities=6% Similarity=-0.000 Sum_probs=113.9
Q ss_pred CcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhc
Q 038758 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKC 143 (354)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~ 143 (354)
+...|..+...+...|++++|.+.|+...+.. +-+...+..+..+|.+.|++++|...+....
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~---------------- 66 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFV---------------- 66 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----------------
Confidence 44557777777777777777777777777654 4455666777777777777777776665530
Q ss_pred CchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhH
Q 038758 144 RYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223 (354)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 223 (354)
.....+...+..+...+...++++.+.+.+++.. .. .+-+...+..+..++.+.|++++|...++.
T Consensus 67 -----------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~--~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (184)
T 3vtx_A 67 -----------VLDTTSAEAYYILGSANFMIDEKQAAIDALQRAI--AL-NTVYADAYYKLGLVYDSMGEHDKAIEAYEK 132 (184)
T ss_dssp -----------HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----------hcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHH--Hh-CccchHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 0011234455556666677777777777777664 21 122345566666667777777777777766
Q ss_pred hhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHh
Q 038758 224 VLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289 (354)
Q Consensus 224 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 289 (354)
..+.. +.+..+|..+...|.+.|++++|++.|++..+. .|+..
T Consensus 133 ~l~~~---------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~a 175 (184)
T 3vtx_A 133 TISIK---------------------PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK--EEKKA 175 (184)
T ss_dssp HHHHC---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--THHHH
T ss_pred HHHhc---------------------chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC--CccCH
Confidence 66654 345677888889999999999999999988764 45543
No 68
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.20 E-value=1.9e-10 Score=88.86 Aligned_cols=155 Identities=14% Similarity=0.061 Sum_probs=112.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++...+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 46677778889999999999999887653 3456678888888899999999999999988764 556777888888899
Q ss_pred hcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHH
Q 038758 112 KCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLL 184 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~ 184 (354)
..|++++|.+.+++. +.+...+..+...+...|++++|...+++..+ .+...+..+...+.+.|++++|.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999888876 33444555556666666666666666655432 23445555666666666666666666
Q ss_pred HHHH
Q 038758 185 DEME 188 (354)
Q Consensus 185 ~~m~ 188 (354)
+...
T Consensus 168 ~~~~ 171 (186)
T 3as5_A 168 KKAN 171 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 69
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.19 E-value=6e-10 Score=99.87 Aligned_cols=252 Identities=9% Similarity=-0.018 Sum_probs=164.2
Q ss_pred cCCcccHHHHHHHHhccCChhhHHHHHHHHHHh-----c--cCC-CceehhhHHHHHHhcCChhHHHHHHHhhc------
Q 038758 62 RPDHFVCPKVYKACSELKDYRVGKDVYDYMISI-----K--FEG-NACVKRPLLDLFIKCGRMEITSGLFEEMD------ 127 (354)
Q Consensus 62 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~--~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~------ 127 (354)
......|+.|...+...|++++|.+.|+...+. + ..| ...+|+.+..+|...|++++|...+++..
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 445567899999999999999999999887653 1 122 34578899999999999999999998760
Q ss_pred ------cccchhhHHHHHHHhc--CchhHHHHHhccCCC--CC-hhhhHHHHHH---HHhCCChhHHHHHHHHHHhhhcC
Q 038758 128 ------QDFLVNNSLIDFYAKC--RYLKVSHCKFSKIKQ--KD-LVSWNAMLAG---YALGGFREEVTNLLDEMEMIQTD 193 (354)
Q Consensus 128 ------~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~--~~-~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~ 193 (354)
....++..+..++.+. +++++|...|++..+ |+ ...+..+... +...++.++|++.+++.. .
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al--~-- 203 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI--R-- 203 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHH--H--
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh--h--
Confidence 1223444454455443 578899999987753 43 3344444333 445677888888888776 2
Q ss_pred CCCC-cchHHHHHHHhhh----hcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCC
Q 038758 194 MQPN-TISLSGVLAACAQ----VKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268 (354)
Q Consensus 194 ~~p~-~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 268 (354)
+.|+ ...+..+...+.. .++.++|...++...+.. +.+...+..+...|.+.|+
T Consensus 204 l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~---------------------~~~~~~~~~lg~~~~~~~~ 262 (472)
T 4g1t_A 204 LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA---------------------PGVTDVLRSAAKFYRRKDE 262 (472)
T ss_dssp HCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC---------------------SSCHHHHHHHHHHHHHTTC
T ss_pred cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC---------------------ccHHHHHHHHHHHHHHcCc
Confidence 2343 3344444433333 355666777776665543 3456778888899999999
Q ss_pred HHHHHHHHHHHHHcCcCCCH-hhHHHHHHHhhccCc-------------------ccCc---------c-ccchhHHHHH
Q 038758 269 VVDALDLLRDVIVANVKPNT-VTIVSVLPACLKLAA-------------------LPQG---------L-GTGSFVWNAL 318 (354)
Q Consensus 269 ~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~~~-------------------~~~~---------~-~~~~~~~~~l 318 (354)
+++|...+++..+. .|+. ..+..+-..|...+. .+.+ . +.+..++..+
T Consensus 263 ~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 340 (472)
T 4g1t_A 263 PDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSIL 340 (472)
T ss_dssp HHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHH
T ss_pred hHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhH
Confidence 99999999998765 4543 344444333322111 0111 2 2345667788
Q ss_pred HHHHHhcCChhHHHHHhhcCCC
Q 038758 319 IDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 319 i~~~~~~g~~~~A~~~~~~m~~ 340 (354)
...|.+.|++++|.+.|++..+
T Consensus 341 g~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 341 ASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHh
Confidence 8889999999999999887654
No 70
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.18 E-value=3.8e-09 Score=96.28 Aligned_cols=268 Identities=8% Similarity=0.010 Sum_probs=167.8
Q ss_pred cCChhHHHHHHHHHHhCCCcCCc---ccHHHHHHHH-------------hccCChhhHHHHHHHHHHh--c-------cC
Q 038758 43 LGYYEEIVNLFYLMIDKGVRPDH---FVCPKVYKAC-------------SELKDYRVGKDVYDYMISI--K-------FE 97 (354)
Q Consensus 43 ~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~-------------~~~~~~~~a~~~~~~m~~~--~-------~~ 97 (354)
.|+++.|..+|++..+. |+. ..|....... .+.+++..|..++..+.+. + ++
T Consensus 143 ~~~~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~ 219 (530)
T 2ooe_A 143 NQRITAVRRVYQRGCVN---PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVP 219 (530)
T ss_dssp HHHHHHHHHHHHHHTTS---CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCC
T ss_pred HhHHHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 78999999999999873 332 2333222210 1345677777777764321 1 23
Q ss_pred CCc--------eehhhHHHHHHhc----CCh----hHHHHHHHhh----ccccchhhHHHHHHHh-------cCchh---
Q 038758 98 GNA--------CVKRPLLDLFIKC----GRM----EITSGLFEEM----DQDFLVNNSLIDFYAK-------CRYLK--- 147 (354)
Q Consensus 98 ~~~--------~~~~~li~~~~~~----g~~----~~a~~~~~~~----~~~~~~~~~li~~~~~-------~~~~~--- 147 (354)
|+. ..|...+...... ++. +.+..+|++. +.+...|..+...+.+ .|+++
T Consensus 220 p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 220 PQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp CC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 331 2344443322221 222 3666677776 5567788888888775 69987
Q ss_pred ----HHHHHhccCCC---C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCc--chHHHHHHHhhhhcCcccc
Q 038758 148 ----VSHCKFSKIKQ---K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT--ISLSGVLAACAQVKGVKLG 217 (354)
Q Consensus 148 ----~a~~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~--~t~~~ll~~~~~~~~~~~a 217 (354)
+|..+|++..+ | +...|..+...+.+.|++++|.++|+... . +.|+. ..|......+.+.|+.+.|
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al--~--~~p~~~~~~~~~~~~~~~~~~~~~~A 375 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL--A--IEDIDPTLVYIQYMKFARRAEGIKSG 375 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--H--SSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHh--C--ccccCchHHHHHHHHHHHHhcCHHHH
Confidence 89999987763 4 46678889999999999999999999997 4 45553 3678888888888999999
Q ss_pred chhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHH-HHHhcCCHHHHHHHHHHHHHcCcCC-CHhhHHHHH
Q 038758 218 KAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS-AFVRSGQVVDALDLLRDVIVANVKP-NTVTIVSVL 295 (354)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li 295 (354)
..+|+...+.... +...|..... .+...|+.++|..+|++..+. .| +...+..++
T Consensus 376 ~~~~~~Al~~~~~---------------------~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~ 432 (530)
T 2ooe_A 376 RMIFKKAREDART---------------------RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYI 432 (530)
T ss_dssp HHHHHHHHTCTTC---------------------CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHH
T ss_pred HHHHHHHHhccCC---------------------chHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHH
Confidence 9999887765321 1111111111 122355555555555555433 23 234444555
Q ss_pred HHhhccCcccCc---------c---cc--chhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 296 PACLKLAALPQG---------L---GT--GSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 296 ~~~~~~~~~~~~---------~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
..+.+.|+.+.+ . .| ...+|...+....+.|+.+.+.++++++.+
T Consensus 433 ~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 433 DYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555554443 1 11 133688888888889999999999888765
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.18 E-value=5.9e-10 Score=86.07 Aligned_cols=160 Identities=16% Similarity=0.051 Sum_probs=119.7
Q ss_pred hhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHh
Q 038758 132 VNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAAC 208 (354)
Q Consensus 132 ~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~ 208 (354)
.+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|.+.+++.. .. .+.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSL--AD-APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHH--hc-CCCCHHHHHHHHHHH
Confidence 445566677777888888888877764 355667778888888899999998888886 32 223456677777788
Q ss_pred hhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCH
Q 038758 209 AQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288 (354)
Q Consensus 209 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 288 (354)
...|++++|...++...+.. +.+...+..+...+.+.|++++|...+++..+.. |+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~---------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~ 143 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN---------------------PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNE 143 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred HHhcCHHHHHHHHHHHHhcC---------------------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccc
Confidence 88888888888888777664 3456677888888888999999999998887653 322
Q ss_pred hhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 289 VTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 289 ~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
..++..+...+.+.|++++|.+.+++..+
T Consensus 144 -----------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 144 -----------------------GKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp -----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22377788888888999999988887765
No 72
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.15 E-value=5.7e-09 Score=90.53 Aligned_cols=225 Identities=8% Similarity=-0.043 Sum_probs=155.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCcCCcc----cHHHHHHHHhccCChhhHHHHHHHHHHhccC-CC----ceehhhH
Q 038758 36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHF----VCPKVYKACSELKDYRVGKDVYDYMISIKFE-GN----ACVKRPL 106 (354)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~l 106 (354)
.-..+...|++++|...+++........+.. .+..+...+...|+++.|.+.+++..+..-. ++ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445667899999999999988764222221 3555667778899999999999998765311 12 2235677
Q ss_pred HHHHHhcCChhHHHHHHHhh----c-------c-ccchhhHHHHHHHhcCchhHHHHHhccCCC--C------ChhhhHH
Q 038758 107 LDLFIKCGRMEITSGLFEEM----D-------Q-DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K------DLVSWNA 166 (354)
Q Consensus 107 i~~~~~~g~~~~a~~~~~~~----~-------~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~------~~~~~~~ 166 (354)
...+...|++++|.+.+++. + + ....+..+...+...|++++|...+++... + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 88899999999999999987 1 1 123456677889999999999999876542 1 1245777
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhhhcCCCCCc-chHH-----HHHHHhhhhcCccccchhhhHhhhhccccccccchhHH
Q 038758 167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNT-ISLS-----GVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVIC 240 (354)
Q Consensus 167 li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~-~t~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 240 (354)
+...+...|++++|...+++.. ...-.++. ..+. .....+...|+.++|...+........
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~----------- 246 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLE--NLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF----------- 246 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH--HHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCC-----------
T ss_pred HHHHHHHcCCHHHHHHHHHHHH--HHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCC-----------
Confidence 7888899999999999999886 32111211 1121 122336677888888887776654321
Q ss_pred HHHHhcccCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038758 241 SCSVFNQLSTRD---VVVWNSIISAFVRSGQVVDALDLLRDVIVA 282 (354)
Q Consensus 241 a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (354)
.++ ...+..+...+...|++++|...+++..+.
T Consensus 247 ---------~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 247 ---------ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp ---------TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 111 124567778899999999999999988653
No 73
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.13 E-value=5.1e-10 Score=92.70 Aligned_cols=224 Identities=12% Similarity=0.012 Sum_probs=144.9
Q ss_pred HhcCChhHHHHHHHHHHhC-------CCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhc------c-CCCceehhhH
Q 038758 41 NVLGYYEEIVNLFYLMIDK-------GVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIK------F-EGNACVKRPL 106 (354)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------~-~~~~~~~~~l 106 (354)
...|++++|...+++..+. +.+.....+..+...+...|++++|.+.++...+.. - +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3457777777777776552 222345567788888889999999999998887652 1 2235578888
Q ss_pred HHHHHhcCChhHHHHHHHhh------------ccccchhhHHHHHHHhcCchhHHHHHhccCCC-------C----Chhh
Q 038758 107 LDLFIKCGRMEITSGLFEEM------------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-------K----DLVS 163 (354)
Q Consensus 107 i~~~~~~g~~~~a~~~~~~~------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~----~~~~ 163 (354)
..+|...|++++|.+.|++. +....++..+...|...|++++|...|++..+ + ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 89999999999999998887 12245667788888888888888888876642 1 2356
Q ss_pred hHHHHHHHHhCCChhHHHHHHHHHHhhh-----cCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchh
Q 038758 164 WNAMLAGYALGGFREEVTNLLDEMEMIQ-----TDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFV 238 (354)
Q Consensus 164 ~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 238 (354)
+..+...+.+.|++++|.+.+++..... ....+....+...+..+...+........+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 234 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY----------------- 234 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHH-----------------
Confidence 7788888999999999999998886210 022344333333333333222222211111
Q ss_pred HHHHHHhcccCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038758 239 ICSCSVFNQLST---RDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281 (354)
Q Consensus 239 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (354)
..+...++.... ....++..+...|.+.|++++|...|++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 235 GEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp --------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122222222221 1245688889999999999999999998875
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.12 E-value=1.6e-09 Score=94.50 Aligned_cols=228 Identities=7% Similarity=-0.178 Sum_probs=163.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCC----CcC-CcccHHHHHHHHhccCChhhHHHHHHHHHHhccC-C-----Cce
Q 038758 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKG----VRP-DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE-G-----NAC 101 (354)
Q Consensus 33 y~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~-----~~~ 101 (354)
|...-..+...|++++|...+++..+.- -.+ ....+..+...+...|+++.|.+.++...+.--. + ...
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 3345556788999999999999987641 111 3356888888999999999999999998865211 1 235
Q ss_pred ehhhHHHHHHhcCChhHHHHHHHhh----c------cccchhhHHHHHHHhcCchhHHHHHhccCCC--------C-Chh
Q 038758 102 VKRPLLDLFIKCGRMEITSGLFEEM----D------QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--------K-DLV 162 (354)
Q Consensus 102 ~~~~li~~~~~~g~~~~a~~~~~~~----~------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~-~~~ 162 (354)
+++.+..+|...|++++|.+.|++. + ....++..+...|...|++++|...|++..+ | ...
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 7888899999999999999999987 1 1124788899999999999999999877653 2 234
Q ss_pred hhHHHHHHHHhCCChhHHHHHHHHHHhhhc--CCCCCcchHHHHHHHhhhhcC---ccccchhhhHhhhhccccccccch
Q 038758 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQT--DMQPNTISLSGVLAACAQVKG---VKLGKAIHGYVLRHHIHLSTACGF 237 (354)
Q Consensus 163 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~ 237 (354)
++..+...+.+.|++++|.+.+++...... +-+.....+..+-..+...|+ .++|..+++.....
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~---------- 335 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY---------- 335 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCH----------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCH----------
Confidence 688888999999999999999998762111 111112234555555666666 33333333332110
Q ss_pred hHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038758 238 VICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282 (354)
Q Consensus 238 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (354)
......+..+...|.+.|++++|...|++..+.
T Consensus 336 ------------~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 336 ------------ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp ------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 112346777889999999999999999998753
No 75
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.10 E-value=8.3e-10 Score=91.41 Aligned_cols=228 Identities=12% Similarity=0.060 Sum_probs=147.0
Q ss_pred hccCChhhHHHHHHHHHHh-------ccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhH
Q 038758 76 SELKDYRVGKDVYDYMISI-------KFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKV 148 (354)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 148 (354)
...|+++.|...+++..+. ..+....++..+...|...|++++|...+++.
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a---------------------- 69 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDA---------------------- 69 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH----------------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHH----------------------
Confidence 4667888888888877753 11223557788888899999999999887764
Q ss_pred HHHHhccCC----CCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhc----C-CCCCcchHHHHHHHhhhhcCccccch
Q 038758 149 SHCKFSKIK----QKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQT----D-MQPNTISLSGVLAACAQVKGVKLGKA 219 (354)
Q Consensus 149 a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~-~~p~~~t~~~ll~~~~~~~~~~~a~~ 219 (354)
.++.++.. .....++..+...+...|++++|.+.|++...... . .+....++..+...+...|++++|..
T Consensus 70 -l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 148 (283)
T 3edt_B 70 -LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEY 148 (283)
T ss_dssp -HHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred -HHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 23332221 12345677778888888888888888887752100 1 12235567777777888888888888
Q ss_pred hhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CcCCCHhhHH
Q 038758 220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA-------NVKPNTVTIV 292 (354)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~t~~ 292 (354)
.++...+.... ....-......++..+...|.+.|++++|...+++..+. ...|....+.
T Consensus 149 ~~~~al~~~~~-------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 215 (283)
T 3edt_B 149 YYRRALEIYAT-------------RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIW 215 (283)
T ss_dssp HHHHHHHHHHH-------------HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHH
T ss_pred HHHHHHHHHHH-------------hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHH
Confidence 87776654110 000000123467888899999999999999999998753 2233333333
Q ss_pred HHHHHhhccCcc-cCc---------------c-ccchhHHHHHHHHHHhcCChhHHHHHhhcCC
Q 038758 293 SVLPACLKLAAL-PQG---------------L-GTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339 (354)
Q Consensus 293 ~li~~~~~~~~~-~~~---------------~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (354)
..+..+...+.. ..+ . .....++..+...|.+.|++++|.+.+++..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 216 MHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333333222221 111 1 2245678889999999999999999998653
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.09 E-value=1.1e-09 Score=102.61 Aligned_cols=155 Identities=6% Similarity=-0.027 Sum_probs=136.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
+|+.|-..+.+.|++++|.+.|++..+.. +-+...|..+...+.+.|++++|.+.|++..+.. +-+...|..+..+|.
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 78899999999999999999999998863 2345678899999999999999999999999875 556788999999999
Q ss_pred hcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHHH
Q 038758 112 KCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNLL 184 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~ 184 (354)
+.|++++|.+.|++. +.+...|+.+...|.+.|++++|++.|++..+ | +...|..+...+...|++++|.+.+
T Consensus 89 ~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~ 168 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM 168 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHH
Confidence 999999999999987 45677899999999999999999999998764 4 4678889999999999999999988
Q ss_pred HHHH
Q 038758 185 DEME 188 (354)
Q Consensus 185 ~~m~ 188 (354)
++..
T Consensus 169 ~kal 172 (723)
T 4gyw_A 169 KKLV 172 (723)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8774
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.07 E-value=5.3e-09 Score=91.01 Aligned_cols=225 Identities=7% Similarity=0.003 Sum_probs=145.9
Q ss_pred HHHHhccCChhhHHHHHHHHHHhcc-CC----CceehhhHHHHHHhcCChhHHHHHHHhh----c-------cccchhhH
Q 038758 72 YKACSELKDYRVGKDVYDYMISIKF-EG----NACVKRPLLDLFIKCGRMEITSGLFEEM----D-------QDFLVNNS 135 (354)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~~~~~-~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~----~-------~~~~~~~~ 135 (354)
...+...|++++|...|+...+.-- .+ ...++..+..+|...|+++.|...+++. + ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445688999999999999886521 12 2456788888999999999999888876 1 12345566
Q ss_pred HHHHHHhcCchhHHHHHhccCCC-----CC----hhhhHHHHHHHHhCCChhHHHHHHHHHHhhh--cCCCCCcchHHHH
Q 038758 136 LIDFYAKCRYLKVSHCKFSKIKQ-----KD----LVSWNAMLAGYALGGFREEVTNLLDEMEMIQ--TDMQPNTISLSGV 204 (354)
Q Consensus 136 li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~p~~~t~~~l 204 (354)
+...|...|++++|...|++..+ ++ ..+++.+...|...|++++|.+.|++..... .+.+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 77778888888888877765542 11 2356677777888888888888887775100 0222235566667
Q ss_pred HHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCC-cchHHHHHHHHHhcCC---HHHHHHHHHHHH
Q 038758 205 LAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRD-VVVWNSIISAFVRSGQ---VVDALDLLRDVI 280 (354)
Q Consensus 205 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~li~~~~~~g~---~~~a~~~~~~m~ 280 (354)
...+.+.|+.++|...++...+.... ...+. ...++.+-..+...++ ..+|+..+++.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~-----------------~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~- 329 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITA-----------------RSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK- 329 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCT-----------------TCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHH-----------------cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-
Confidence 77777778888777777666554321 11111 2234444445555666 55666655542
Q ss_pred HcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCC
Q 038758 281 VANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMP 339 (354)
Q Consensus 281 ~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 339 (354)
+..|+. ...+..+...|.+.|++++|.+.|++..
T Consensus 330 --~~~~~~-----------------------~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 330 --NLHAYI-----------------------EACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp --TCHHHH-----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --CChhHH-----------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 222221 2246678889999999999999988754
No 78
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.05 E-value=9.9e-09 Score=85.92 Aligned_cols=196 Identities=9% Similarity=-0.079 Sum_probs=121.4
Q ss_pred HHHhcCChhHHHHHHHhh----------ccccchhhHHHHHHHhcCchhHHHHHhccCCC-------CC--hhhhHHHHH
Q 038758 109 LFIKCGRMEITSGLFEEM----------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-------KD--LVSWNAMLA 169 (354)
Q Consensus 109 ~~~~~g~~~~a~~~~~~~----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~~--~~~~~~li~ 169 (354)
.|...|++++|...|++. .....+|+.+...|.+.|++++|...|++..+ +. ..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555544 00133455555566666666666555554432 11 346788888
Q ss_pred HHHhC-CChhHHHHHHHHHHhhhcCC--CCC-cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHh
Q 038758 170 GYALG-GFREEVTNLLDEMEMIQTDM--QPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVF 245 (354)
Q Consensus 170 ~~~~~-~~~~~a~~~~~~m~~~~~~~--~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 245 (354)
.|... |++++|...|++..+...+. .+. ..++..+...+.+.|++++|...++...+....
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--------------- 190 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG--------------- 190 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS---------------
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc---------------
Confidence 89886 99999999999876211111 111 345777888889999999999998888776541
Q ss_pred cccCCCCc-----chHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHH
Q 038758 246 NQLSTRDV-----VVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALID 320 (354)
Q Consensus 246 ~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~ 320 (354)
.+.. ..|..+...+...|++++|...|++..+ +.|+.... .....+..++.
T Consensus 191 ----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~------------------~~~~~l~~l~~ 246 (292)
T 1qqe_A 191 ----NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADS------------------RESNFLKSLID 246 (292)
T ss_dssp ----CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------------------------HHHHHHHHH
T ss_pred ----CCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCc------------------HHHHHHHHHHH
Confidence 1111 1467778889999999999999999874 34543210 01112444555
Q ss_pred HHH--hcCChhHHHHHhhcCCCCCc
Q 038758 321 MYG--RCGAIQKSRKIFVLMPHKNL 343 (354)
Q Consensus 321 ~~~--~~g~~~~A~~~~~~m~~~~~ 343 (354)
++. ..+++++|.+.|+.+...|+
T Consensus 247 ~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 247 AVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp HHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHcCCHHHHHHHHHHhccCCccHH
Confidence 554 46778899999988877544
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.02 E-value=5.5e-09 Score=83.96 Aligned_cols=145 Identities=7% Similarity=-0.030 Sum_probs=116.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|...-..+...|++++|...|++..+...+++...+..+...+...|++++|.+.++...+.. +.+...+..+..+|.
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHH
Confidence 4566777888999999999999999987644777777778889999999999999999998764 446778899999999
Q ss_pred hcCChhHHHHHHHhh----cccc-------chhhHHHHHHHhcCchhHHHHHhccCCC--CC---hhhhHHHHHHHHhCC
Q 038758 112 KCGRMEITSGLFEEM----DQDF-------LVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KD---LVSWNAMLAGYALGG 175 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~----~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~---~~~~~~li~~~~~~~ 175 (354)
..|++++|...|++. +.+. ..|..+...+...|++++|...|++..+ |+ ...|..+...|...|
T Consensus 88 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~ 167 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG 167 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH
Confidence 999999999999987 2233 4577788888999999999999998876 33 345666666666554
Q ss_pred Ch
Q 038758 176 FR 177 (354)
Q Consensus 176 ~~ 177 (354)
+.
T Consensus 168 ~~ 169 (228)
T 4i17_A 168 AD 169 (228)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 80
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.99 E-value=5e-09 Score=76.08 Aligned_cols=128 Identities=13% Similarity=0.215 Sum_probs=92.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|+++.|.++++.+.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 46677778888899999999998887754 3355667777788888888888888888887764 445566777777777
Q ss_pred hcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 112 KCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
..|++++|.+.++++.. ....+...+..+...+.+.|++++|.+.++++.
T Consensus 81 ~~~~~~~A~~~~~~~~~---------------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALE---------------------------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTTCHHHHHHHHHHHHH---------------------------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH---------------------------hCCCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 77887777777665410 011245566677777788888888888887775
No 81
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.98 E-value=8.4e-09 Score=86.35 Aligned_cols=188 Identities=10% Similarity=-0.014 Sum_probs=104.9
Q ss_pred HhccCChhhHHHHHHHHHHh----ccCCC-ceehhhHHHHHHhcCChhHHHHHHHhh---cc-------ccchhhHHHHH
Q 038758 75 CSELKDYRVGKDVYDYMISI----KFEGN-ACVKRPLLDLFIKCGRMEITSGLFEEM---DQ-------DFLVNNSLIDF 139 (354)
Q Consensus 75 ~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~---~~-------~~~~~~~li~~ 139 (354)
+...|++++|.+.|+...+. |-++. ..+|+.+..+|.+.|++++|...|++. .+ ...+++.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455555555555554433 11111 334555555555556665555555554 00 12345556666
Q ss_pred HHhc-CchhHHHHHhccCCC--C---C----hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcc------hHHH
Q 038758 140 YAKC-RYLKVSHCKFSKIKQ--K---D----LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI------SLSG 203 (354)
Q Consensus 140 ~~~~-~~~~~a~~~~~~~~~--~---~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~------t~~~ 203 (354)
|... |++++|...|++..+ | + ..+++.+...+.+.|++++|...|++.. ......... .|..
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLI--KSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HTTSSCTTTGGGHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH--HHHhcCCcccHHHHHHHHH
Confidence 6664 666666666665542 1 1 3457778888888999999999998886 332222111 4556
Q ss_pred HHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 038758 204 VLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFV--RSGQVVDALDLLRDVI 280 (354)
Q Consensus 204 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~ 280 (354)
+..++...|+++.|...++...+....... ......+..++.++. ..+++++|+..|+++.
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~----------------~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSEDPNFAD----------------SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC-------------------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCC----------------cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 666777788888888887776654321000 001112334455554 3466888888887665
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.98 E-value=3e-09 Score=99.64 Aligned_cols=160 Identities=7% Similarity=-0.045 Sum_probs=139.3
Q ss_pred CcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHH
Q 038758 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDF 139 (354)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~ 139 (354)
+...|+.|...+.+.|++++|.+.|++..+.. +-+...+..|..+|.+.|++++|.+.|++. +.+...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 35568899999999999999999999999874 556788999999999999999999999987 4457789999999
Q ss_pred HHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC-cchHHHHHHHhhhhcCcc
Q 038758 140 YAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN-TISLSGVLAACAQVKGVK 215 (354)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~~~~ 215 (354)
|.+.|++++|++.|++..+ | +...|+.+...|.+.|++++|++.|++.. + +.|+ ...+..+..++...|+++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al--~--l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTAL--K--LKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--H--HCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--H--hCCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999998764 3 56789999999999999999999999987 2 3454 567889999999999999
Q ss_pred ccchhhhHhhhhc
Q 038758 216 LGKAIHGYVLRHH 228 (354)
Q Consensus 216 ~a~~~~~~~~~~~ 228 (354)
+|.+.+++..+..
T Consensus 163 ~A~~~~~kal~l~ 175 (723)
T 4gyw_A 163 DYDERMKKLVSIV 175 (723)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999988877643
No 83
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.94 E-value=1.4e-08 Score=90.50 Aligned_cols=101 Identities=9% Similarity=-0.027 Sum_probs=39.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCCh---hhHHHHHHHHHHhccCCCceehhhHHHHHHhc
Q 038758 37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY---RVGKDVYDYMISIKFEGNACVKRPLLDLFIKC 113 (354)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 113 (354)
-..+.+.|++++|.++|++..+.| +...+..|-..+...|+. ++|.+.|+...+. ++..+..|...+...
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 344556677777777777766654 222333333344445555 6666666665533 444455555544444
Q ss_pred C-----ChhHHHHHHHhh--ccccchhhHHHHHHHhcC
Q 038758 114 G-----RMEITSGLFEEM--DQDFLVNNSLIDFYAKCR 144 (354)
Q Consensus 114 g-----~~~~a~~~~~~~--~~~~~~~~~li~~~~~~~ 144 (354)
| ++++|.+.|++. ..+...+..|...|...+
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~ 120 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYP 120 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCG
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 3 556666666655 222334444444444433
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.92 E-value=4.6e-08 Score=85.02 Aligned_cols=223 Identities=10% Similarity=-0.065 Sum_probs=156.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCc-C----CcccHHHHHHHHhccCChhhHHHHHHHHHHhccC-C-----Cceehh
Q 038758 36 MMGMYNVLGYYEEIVNLFYLMIDKGVR-P----DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE-G-----NACVKR 104 (354)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~~~~~-p----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~-----~~~~~~ 104 (354)
.-..+...|++++|...|++..+.... + ....+..+...+...|+++.|...++...+..-. + ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 344567889999999999998765211 2 2346778888899999999999999988765211 1 245678
Q ss_pred hHHHHHHhcCChhHHHHHHHhh----------ccccchhhHHHHHHHhcCchhHHHHHhccCCC-------C-ChhhhHH
Q 038758 105 PLLDLFIKCGRMEITSGLFEEM----------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-------K-DLVSWNA 166 (354)
Q Consensus 105 ~li~~~~~~g~~~~a~~~~~~~----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~-~~~~~~~ 166 (354)
.+..+|...|++++|.+.|++. .....++..+...|...|++++|...|++..+ | ...++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 8999999999999999999887 11234677889999999999999999987653 2 2456778
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhhhcCCCC-C---cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHH
Q 038758 167 MLAGYALGGFREEVTNLLDEMEMIQTDMQP-N---TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSC 242 (354)
Q Consensus 167 li~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 242 (354)
+...+.+.|++++|...+++.. ...-.. + ...+..+-..+...++.+ ...+|+
T Consensus 267 la~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~l~~ly~~~~~~~---------------------~~~~al 323 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGL--DHITARSHKFYKELFLFLQAVYKETVDER---------------------KIHDLL 323 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH--HHCCTTCCSCHHHHHHHHHHHHSSSCCHH---------------------HHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHhCCCcHH---------------------HHHHHH
Confidence 8889999999999999999987 322111 1 122333333334444411 122233
Q ss_pred HHhcccCC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038758 243 SVFNQLST--RDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281 (354)
Q Consensus 243 ~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (354)
..+++... .....+..+...|.+.|++++|...|++..+
T Consensus 324 ~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 324 SYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33333211 1224566788899999999999999998864
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.90 E-value=8.8e-08 Score=82.95 Aligned_cols=233 Identities=9% Similarity=0.060 Sum_probs=162.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcC-C----cccHHHHHHHHhccCChhhHHHHHHHHHHhc----cC--C-C
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRP-D----HFVCPKVYKACSELKDYRVGKDVYDYMISIK----FE--G-N 99 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~--~-~ 99 (354)
+++.+-..+...|++++|...+++........ + ..++..+...+...|++++|.+.++...+.. .. | .
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 45667778889999999999999987642111 1 1224566777889999999999999987653 11 2 2
Q ss_pred ceehhhHHHHHHhcCChhHHHHHHHhh---cc------ccchhhHHHHHHHhcCchhHHHHHhccCC----CCCh-hhhH
Q 038758 100 ACVKRPLLDLFIKCGRMEITSGLFEEM---DQ------DFLVNNSLIDFYAKCRYLKVSHCKFSKIK----QKDL-VSWN 165 (354)
Q Consensus 100 ~~~~~~li~~~~~~g~~~~a~~~~~~~---~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~ 165 (354)
...+..+...+...|++++|...+++. .+ ...++..+...+...|++++|...+++.. .++. ..+.
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 214 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 214 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH
Confidence 345667888899999999999999986 11 12356678888999999999999987654 2221 1222
Q ss_pred -----HHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC---cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccch
Q 038758 166 -----AMLAGYALGGFREEVTNLLDEMEMIQTDMQPN---TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGF 237 (354)
Q Consensus 166 -----~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 237 (354)
.....+...|++++|...+++.. .....+. ...+..+...+...|++++|...++.......... .
T Consensus 215 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~----~ 288 (373)
T 1hz4_A 215 SNANKVRVIYWQMTGDKAAAANWLRHTA--KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLR----L 288 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSC--CCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----C
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCC--CCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc----c
Confidence 22344779999999999999886 4332111 12355666778888999999988877765432100 0
Q ss_pred hHHHHHHhcccCCCCc-chHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038758 238 VICSCSVFNQLSTRDV-VVWNSIISAFVRSGQVVDALDLLRDVIVA 282 (354)
Q Consensus 238 ~~~a~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (354)
.++. ..+..+-..+...|+.++|...+++..+.
T Consensus 289 ------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 289 ------------MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 0111 24556677888999999999999987653
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.90 E-value=7.4e-08 Score=77.25 Aligned_cols=193 Identities=9% Similarity=-0.009 Sum_probs=142.1
Q ss_pred CcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHH
Q 038758 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDF 139 (354)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~ 139 (354)
|...+......+...|++++|.+.|+...+...+++...+..+..++...|++++|.+.|++. +.+...|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 456777888889999999999999999998863378888888999999999999999999988 4456788889999
Q ss_pred HHhcCchhHHHHHhccCCC--CC-h-------hhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC---cchHHHHHH
Q 038758 140 YAKCRYLKVSHCKFSKIKQ--KD-L-------VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN---TISLSGVLA 206 (354)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~-~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~---~~t~~~ll~ 206 (354)
|...|++++|...|++..+ |+ . ..|..+-..+.+.|++++|.+.|++.. . ..|+ ...+..+..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al--~--~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT--D--VTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT--T--SSCHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH--h--cCCCcccHHHHHHHHH
Confidence 9999999999999988764 33 3 347777888899999999999999987 3 3554 345666666
Q ss_pred HhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCC
Q 038758 207 ACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKP 286 (354)
Q Consensus 207 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 286 (354)
++...|.. +++.+...+ ..+...|.... ....+.+++|+..|++..+. .|
T Consensus 162 ~~~~~~~~-----~~~~a~~~~---------------------~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p 211 (228)
T 4i17_A 162 LFYNNGAD-----VLRKATPLA---------------------SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SP 211 (228)
T ss_dssp HHHHHHHH-----HHHHHGGGT---------------------TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHHH-----HHHHHHhcc---------------------cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CC
Confidence 66555432 222222221 22233333332 23456689999999998865 46
Q ss_pred CHhh
Q 038758 287 NTVT 290 (354)
Q Consensus 287 ~~~t 290 (354)
+...
T Consensus 212 ~~~~ 215 (228)
T 4i17_A 212 NRTE 215 (228)
T ss_dssp TCHH
T ss_pred CCHH
Confidence 5543
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.89 E-value=1.6e-08 Score=73.34 Aligned_cols=131 Identities=11% Similarity=0.084 Sum_probs=95.9
Q ss_pred cHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCch
Q 038758 67 VCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL 146 (354)
Q Consensus 67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~ 146 (354)
.|..+...+...|++++|.++++.+.+.+ +.+...+..+...+...|++++|...|++..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~------------------- 62 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL------------------- 62 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHH-------------------
Confidence 35566667777788888888888777654 3455566666677777777777776666531
Q ss_pred hHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhh
Q 038758 147 KVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR 226 (354)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 226 (354)
+ ....+...+..+...+.+.|++++|.+.++++. ... +.+...+..+...+.+.|+.++|...+..+.+
T Consensus 63 ----~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 63 ----E----LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL--ELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp ----H----HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH--HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred ----H----HCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHH--HhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 0 012345678888899999999999999999987 332 33466788889999999999999999998876
Q ss_pred hc
Q 038758 227 HH 228 (354)
Q Consensus 227 ~~ 228 (354)
..
T Consensus 132 ~~ 133 (136)
T 2fo7_A 132 LD 133 (136)
T ss_dssp HS
T ss_pred cC
Confidence 54
No 88
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.88 E-value=1.1e-07 Score=84.82 Aligned_cols=167 Identities=8% Similarity=-0.036 Sum_probs=68.7
Q ss_pred hhhHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCcCCcccHHHHHHHHhcc
Q 038758 2 ELGIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYY---EEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL 78 (354)
Q Consensus 2 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 78 (354)
++|...+....+.|- |+.. ..|-..|...|+. ++|...|++..+. +...+..|...+...
T Consensus 20 ~~A~~~~~~aa~~g~-~~A~------------~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 20 VTAQQNYQQLAELGY-SEAQ------------VGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHTC-CTGG------------GTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCC-HHHH------------HHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 467777777777662 2211 1122223334555 6777777776643 344445554433333
Q ss_pred C-----ChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh-----ccccchhhHHHHHHHhcCc---
Q 038758 79 K-----DYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-----DQDFLVNNSLIDFYAKCRY--- 145 (354)
Q Consensus 79 ~-----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-----~~~~~~~~~li~~~~~~~~--- 145 (354)
+ ++++|.+.|+...+.| . ...+..|...|...+..+.+.+.++.+ ..+...+..|...|...+.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g-~--~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANG-E--GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTT-C--SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG
T ss_pred CCCCCcCHHHHHHHHHHHHHCC-C--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc
Confidence 3 6667777777776654 2 225555666666555433333333222 1233444445555554442
Q ss_pred -hhHHHHHhccCCCCChhhhHHHHHHHHhCC---ChhHHHHHHHHHH
Q 038758 146 -LKVSHCKFSKIKQKDLVSWNAMLAGYALGG---FREEVTNLLDEME 188 (354)
Q Consensus 146 -~~~a~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~ 188 (354)
.+++..+++.....++..+..+...|.+.| +.++|++.|+...
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa 206 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGV 206 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence 233333344433334445555555555555 5555555555554
No 89
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.80 E-value=9.3e-08 Score=75.64 Aligned_cols=160 Identities=13% Similarity=0.068 Sum_probs=122.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHH----------------HHHHHhccCChhhHHHHHHHHHHhccCCCc
Q 038758 37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPK----------------VYKACSELKDYRVGKDVYDYMISIKFEGNA 100 (354)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 100 (354)
...+...|++++|...|++..+... -+...|.. +...+.+.|++++|...|+...+.. +-+.
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~ 88 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNV 88 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCH
Confidence 3456788999999999999987642 23344556 7888999999999999999999875 5678
Q ss_pred eehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcC--chhHHHHHhccCCCCChhh--hHHHHHHHH
Q 038758 101 CVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCR--YLKVSHCKFSKIKQKDLVS--WNAMLAGYA 172 (354)
Q Consensus 101 ~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~--~~~li~~~~ 172 (354)
..+..+..++...|++++|...|++. +.+..+|..+...|...| ..+.+...++....|+... +.....++.
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~ 168 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKL 168 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 88999999999999999999999998 456678888888887665 4566778888887766543 333455667
Q ss_pred hCCChhHHHHHHHHHHhhhcCCCCCcchHH
Q 038758 173 LGGFREEVTNLLDEMEMIQTDMQPNTISLS 202 (354)
Q Consensus 173 ~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~ 202 (354)
..|++++|...|++.. .+.|+.....
T Consensus 169 ~~~~~~~A~~~~~~al----~l~P~~~~~~ 194 (208)
T 3urz_A 169 FTTRYEKARNSLQKVI----LRFPSTEAQK 194 (208)
T ss_dssp HHHTHHHHHHHHHHHT----TTSCCHHHHH
T ss_pred HccCHHHHHHHHHHHH----HhCCCHHHHH
Confidence 7899999999999987 4567654433
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.78 E-value=4.9e-08 Score=80.13 Aligned_cols=181 Identities=12% Similarity=0.088 Sum_probs=126.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCcCC----cccHHHHHHHHhccCChhhHHHHHHHHHHhcc-CC-CceehhhH
Q 038758 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPD----HFVCPKVYKACSELKDYRVGKDVYDYMISIKF-EG-NACVKRPL 106 (354)
Q Consensus 33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~-~~~~~~~l 106 (354)
+-.+-..+.+.|++++|...|++..+.. |+ ...+..+...+...|++++|...|+...+... .| ....+..+
T Consensus 18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 18 AFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 4455667888999999999999998864 33 45677788889999999999999999998631 11 23456777
Q ss_pred HHHHHh--------cCChhHHHHHHHhh---cc-ccchh-----------------hHHHHHHHhcCchhHHHHHhccCC
Q 038758 107 LDLFIK--------CGRMEITSGLFEEM---DQ-DFLVN-----------------NSLIDFYAKCRYLKVSHCKFSKIK 157 (354)
Q Consensus 107 i~~~~~--------~g~~~~a~~~~~~~---~~-~~~~~-----------------~~li~~~~~~~~~~~a~~~~~~~~ 157 (354)
..++.. .|++++|...|++. .| +.... ..+...|.+.|++++|...|++..
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 175 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF 175 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 888888 99999999999988 23 33344 345677888888888888888775
Q ss_pred C--CC----hhhhHHHHHHHHhC----------CChhHHHHHHHHHHhhhcCCCCCcc----hHHHHHHHhhhhcCcccc
Q 038758 158 Q--KD----LVSWNAMLAGYALG----------GFREEVTNLLDEMEMIQTDMQPNTI----SLSGVLAACAQVKGVKLG 217 (354)
Q Consensus 158 ~--~~----~~~~~~li~~~~~~----------~~~~~a~~~~~~m~~~~~~~~p~~~----t~~~ll~~~~~~~~~~~a 217 (354)
+ |+ ...+..+..+|.+. |++++|...|+... . ..|+.. ....+-....+.++.+.+
T Consensus 176 ~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~--~--~~p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 176 DAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL--Q--IFPDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH--H--HCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH--H--HCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 3 43 23466666777655 77888888888886 2 234432 333333344444544444
Q ss_pred ch
Q 038758 218 KA 219 (354)
Q Consensus 218 ~~ 219 (354)
..
T Consensus 252 ~~ 253 (261)
T 3qky_A 252 AS 253 (261)
T ss_dssp TT
T ss_pred hH
Confidence 33
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.78 E-value=5.3e-08 Score=80.69 Aligned_cols=178 Identities=8% Similarity=-0.004 Sum_probs=126.4
Q ss_pred HHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhcc-CCCceehhhHHHHHHhcCChhHHHHHHHhh-
Q 038758 49 IVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKF-EGNACVKRPLLDLFIKCGRMEITSGLFEEM- 126 (354)
Q Consensus 49 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~- 126 (354)
+...|++..+.+ .++..++..+..++...|++++|.+++......+- .-+...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777776655 45566666788888899999999999988765542 135567778889999999999999999887
Q ss_pred --cc-----ccchhhHHHHHH--HhcC--chhHHHHHhccCCC--CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcC
Q 038758 127 --DQ-----DFLVNNSLIDFY--AKCR--YLKVSHCKFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD 193 (354)
Q Consensus 127 --~~-----~~~~~~~li~~~--~~~~--~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 193 (354)
.| +..+...|..++ ...| +..+|..+|+++.+ |+..+-..++.++.+.|++++|.+.++.+.+....
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 44 245556666663 3334 89999999999875 43234455666889999999999999977520111
Q ss_pred C------CC-CcchHHHHHHHhhhhcCccccchhhhHhhhhcc
Q 038758 194 M------QP-NTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI 229 (354)
Q Consensus 194 ~------~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 229 (354)
+ .| |..++..++......|+ .+.+++.++.+...
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 1 24 45566455555555665 78888888887754
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.76 E-value=8e-08 Score=79.63 Aligned_cols=186 Identities=12% Similarity=0.064 Sum_probs=130.1
Q ss_pred HHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh-c-----cccchhhHHHHHHHhcCchhHHHHHhccCC
Q 038758 84 GKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-D-----QDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157 (354)
Q Consensus 84 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 157 (354)
+...|++..+.+ .++..++..+..++...|++++|++.+.+. . .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677787777655 556666678889999999999999999987 2 456677788999999999999999999887
Q ss_pred C--C-----ChhhhHHHHHHHH--h--CCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhh
Q 038758 158 Q--K-----DLVSWNAMLAGYA--L--GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLR 226 (354)
Q Consensus 158 ~--~-----~~~~~~~li~~~~--~--~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 226 (354)
+ | +..+...+..+++ . .+++.+|..+|+++. .. .|+..+-..++.++.+.|++++|+..++.+.+
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~--~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELS--QT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHH--TT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHH--Hh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5 4 2345555665532 2 348999999999996 33 34433445555588899999999999987665
Q ss_pred hccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHh
Q 038758 227 HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289 (354)
Q Consensus 227 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 289 (354)
....... . +.+.+.|..+.-.+|......|+ +|.++++++.+. .|+..
T Consensus 240 ~~p~~~~----k-------~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp 287 (310)
T 3mv2_B 240 DYYSVEQ----K-------ENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHA 287 (310)
T ss_dssp HHHHTTT----C-------HHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCH
T ss_pred hcccccc----c-------ccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCCh
Confidence 4210000 0 00002355666455555555677 899999999865 56654
No 93
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.76 E-value=4.9e-07 Score=76.09 Aligned_cols=197 Identities=7% Similarity=-0.091 Sum_probs=120.4
Q ss_pred hcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHH
Q 038758 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSG 121 (354)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 121 (354)
..|++++|.+++++..+.. +.. + +...++++.|...|+.. ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~--~~~--~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL--KTS--F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH--CCC--S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc--ccc--c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3578888888888776542 110 0 11134555555555443 234555566666665
Q ss_pred HHHhh----------ccccchhhHHHHHHHhcCchhHHHHHhccCC-------CCC--hhhhHHHHHHHHhCCChhHHHH
Q 038758 122 LFEEM----------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK-------QKD--LVSWNAMLAGYALGGFREEVTN 182 (354)
Q Consensus 122 ~~~~~----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-------~~~--~~~~~~li~~~~~~~~~~~a~~ 182 (354)
.|.+. ......|+.+...|.+.|++++|...|++.. .+. ..+++.+...|.. |++++|++
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 55554 0112345555666666666666666554432 222 3467777888877 99999999
Q ss_pred HHHHHHhhhc--CCCC-CcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCC-cchHHH
Q 038758 183 LLDEMEMIQT--DMQP-NTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRD-VVVWNS 258 (354)
Q Consensus 183 ~~~~m~~~~~--~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~ 258 (354)
.|++...... +-.+ ...++..+...+.+.|++++|...++...+....... .+. ...+..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------~~~~~~~~~~ 200 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN----------------YPTCYKKCIA 200 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------------HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC----------------hhHHHHHHHH
Confidence 9988752111 1111 1356777788888999999999988877765331000 001 225666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 038758 259 IISAFVRSGQVVDALDLLRDVI 280 (354)
Q Consensus 259 li~~~~~~g~~~~a~~~~~~m~ 280 (354)
+...+...|++++|...|++..
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHh
Confidence 6777888899999999999987
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.69 E-value=5.2e-07 Score=72.23 Aligned_cols=178 Identities=10% Similarity=-0.019 Sum_probs=97.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCcCC--cccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCce---ehhhHH
Q 038758 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPD--HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNAC---VKRPLL 107 (354)
Q Consensus 33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li 107 (354)
+..+...+.+.|++++|...|+++.+...... ...+..+..++.+.|++++|...|+.+.+.. +-+.. .+..+.
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHHHH
Confidence 34455678889999999999999987532211 2457778888999999999999999998763 22222 344444
Q ss_pred HHHHh------------------cCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhH
Q 038758 108 DLFIK------------------CGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWN 165 (354)
Q Consensus 108 ~~~~~------------------~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 165 (354)
.++.. .|+.++|...|+++ +.+...+.+....-.-.+... ...-
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~--------------~~~~ 151 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLA--------------KYEY 151 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHH--------------HHHH
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHH--------------HHHH
Confidence 44443 35566666666655 112222211100000000000 0001
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC----cchHHHHHHHhhhhcCccccchhhhHhhhhcc
Q 038758 166 AMLAGYALGGFREEVTNLLDEMEMIQTDMQPN----TISLSGVLAACAQVKGVKLGKAIHGYVLRHHI 229 (354)
Q Consensus 166 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 229 (354)
.+...|.+.|++++|...|+.+. .. .|+ ...+..+..++.+.|+.++|...++.+...+.
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l--~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGML--RD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH--HH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHcCcHHHHHHHHHHHH--HH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 23344556666666666666654 21 122 13455556666666666666666665555443
No 95
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.68 E-value=4.6e-07 Score=75.68 Aligned_cols=111 Identities=14% Similarity=0.128 Sum_probs=68.9
Q ss_pred cccchhhhhhHhhhhh-------------------hHHHHHHHHHhcCChhHHHHHHHHHHhCCC-cCCcc----cHHHH
Q 038758 16 VELCAFLGSQLLEVFC-------------------NWTSMMGMYNVLGYYEEIVNLFYLMIDKGV-RPDHF----VCPKV 71 (354)
Q Consensus 16 ~~~~~~~~~~li~~~~-------------------~y~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~----~~~~l 71 (354)
..|+..+...+...+. .+...+..+...|++++|..++++..+... .|+.. .+..+
T Consensus 42 ~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l 121 (293)
T 3u3w_A 42 VYPSMDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYV 121 (293)
T ss_dssp CCCCHHHHHHHHHHHTCCTHHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcCHHHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHH
Confidence 4566666555555554 233346667778888888888888776421 12211 22235
Q ss_pred HHHHhccCChhhHHHHHHHHHHhccC-CC----ceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758 72 YKACSELKDYRVGKDVYDYMISIKFE-GN----ACVKRPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
...+...+++++|.+.++...+.... ++ ..+++.+..+|...|++++|...|++.
T Consensus 122 ~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 181 (293)
T 3u3w_A 122 AAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQI 181 (293)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55556667888888888887764322 22 125777777788888888888777664
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.68 E-value=9.7e-08 Score=89.54 Aligned_cols=166 Identities=10% Similarity=-0.046 Sum_probs=135.0
Q ss_pred HhcCChhHHHHHHHHHH--------hCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHh
Q 038758 41 NVLGYYEEIVNLFYLMI--------DKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIK 112 (354)
Q Consensus 41 ~~~~~~~~a~~~~~~m~--------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 112 (354)
...|++++|++.+++.. +.. +.+...+..+...+...|++++|.+.|+...+.+ +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999998 332 3455678888889999999999999999999875 6677889999999999
Q ss_pred cCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHHHH
Q 038758 113 CGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNLLD 185 (354)
Q Consensus 113 ~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~ 185 (354)
.|++++|.+.|++. +.+...|..+..+|.+.|++++ ++.|++..+ | +...|..+..++.+.|++++|.+.|+
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999997 4567788999999999999999 999988753 3 56778899999999999999999999
Q ss_pred HHHhhhcCCCCC-cchHHHHHHHhhhhcC
Q 038758 186 EMEMIQTDMQPN-TISLSGVLAACAQVKG 213 (354)
Q Consensus 186 ~m~~~~~~~~p~-~~t~~~ll~~~~~~~~ 213 (354)
+.. .+.|+ ...+..+..++...++
T Consensus 559 ~al----~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 559 EVP----PTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TSC----TTSTTHHHHHHHHHHHTC----
T ss_pred hhc----ccCcccHHHHHHHHHHHHccCC
Confidence 875 34555 4456666666655444
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.66 E-value=2e-07 Score=76.45 Aligned_cols=161 Identities=9% Similarity=-0.029 Sum_probs=117.6
Q ss_pred CcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCC---ceehhhHHHHHHhcCChhHHHHHHHhh---ccc----cchh
Q 038758 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN---ACVKRPLLDLFIKCGRMEITSGLFEEM---DQD----FLVN 133 (354)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~----~~~~ 133 (354)
+...+..+...+.+.|++++|.+.|+.+.+.. +.+ ...+..+..+|.+.|++++|...|++. .|+ ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44556667778889999999999999998764 323 567888899999999999999999998 232 3456
Q ss_pred hHHHHHHHh--------cCchhHHHHHhccCCC--CCh-hhh-----------------HHHHHHHHhCCChhHHHHHHH
Q 038758 134 NSLIDFYAK--------CRYLKVSHCKFSKIKQ--KDL-VSW-----------------NAMLAGYALGGFREEVTNLLD 185 (354)
Q Consensus 134 ~~li~~~~~--------~~~~~~a~~~~~~~~~--~~~-~~~-----------------~~li~~~~~~~~~~~a~~~~~ 185 (354)
..+..++.. .|++++|...|++... |+. ... ..+...|.+.|++++|...|+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 677788888 9999999999998764 432 333 445778899999999999999
Q ss_pred HHHhhhcCC--CCCcchHHHHHHHhhhh----------cCccccchhhhHhhhh
Q 038758 186 EMEMIQTDM--QPNTISLSGVLAACAQV----------KGVKLGKAIHGYVLRH 227 (354)
Q Consensus 186 ~m~~~~~~~--~p~~~t~~~ll~~~~~~----------~~~~~a~~~~~~~~~~ 227 (354)
... .... ......+..+..++... |++++|...++.+.+.
T Consensus 173 ~~l--~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 173 AVF--DAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHH--HHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHH--HHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 987 3221 11234566677777766 4445555555554443
No 98
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.63 E-value=8.7e-07 Score=67.90 Aligned_cols=154 Identities=10% Similarity=-0.007 Sum_probs=90.8
Q ss_pred HHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHH--hh
Q 038758 135 SLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAA--CA 209 (354)
Q Consensus 135 ~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~--~~ 209 (354)
.+...+.+.|++++|...|++..+ | +...+..+...+.+.|++++|...|+... . ..|+.. +..+... +.
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~--~--~~p~~~-~~~~~~~~~~~ 85 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIP--L--EYQDNS-YKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCC--G--GGCCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhh--h--ccCChH-HHHHHHHHHHH
Confidence 344556666666666666666653 2 44556667777777777777777777664 2 122222 2222111 11
Q ss_pred hhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHh
Q 038758 210 QVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289 (354)
Q Consensus 210 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 289 (354)
..++...+...++...+.. +.+...+..+...+...|++++|...|+++.+. .|+..
T Consensus 86 ~~~~~~~a~~~~~~al~~~---------------------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~ 142 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN---------------------PDNFELACELAVQYNQVGRDEEALELLWNILKV--NLGAQ 142 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTTT
T ss_pred hhcccchHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CcccC
Confidence 2222223444454444432 235677778888888888888888888888755 34321
Q ss_pred hHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhc
Q 038758 290 TIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVL 337 (354)
Q Consensus 290 t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 337 (354)
+...+..+...+...|+.++|...|++
T Consensus 143 ---------------------~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 143 ---------------------DGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp ---------------------TTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred ---------------------hHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 112366677777778888877777664
No 99
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.62 E-value=1.4e-06 Score=68.80 Aligned_cols=157 Identities=11% Similarity=-0.049 Sum_probs=101.4
Q ss_pred hhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhc
Q 038758 133 NNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK 212 (354)
Q Consensus 133 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~ 212 (354)
+..+...+...|++++|...|++...|+...|..+...+.+.|++++|.+.|++.. ... +.+...+..+..++...|
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSI--NRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhC-ccchHHHHHHHHHHHHcc
Confidence 33455667777788888888877777777778888888888888888888888776 322 234556777777788888
Q ss_pred CccccchhhhHhhhhccccccccchhHHHHHHhc-ccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhH
Q 038758 213 GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFN-QLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTI 291 (354)
Q Consensus 213 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 291 (354)
++++|...++...+........ . ..... .........|..+...|.+.|++++|...|++..+..-......+
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 159 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLI----D--YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKI 159 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEE----E--CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHH
T ss_pred cHHHHHHHHHHHHHhCCCccHH----H--HHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchH
Confidence 8888888887776653210000 0 00000 000012367788889999999999999999999865422233333
Q ss_pred HHHHHHh
Q 038758 292 VSVLPAC 298 (354)
Q Consensus 292 ~~li~~~ 298 (354)
...+..+
T Consensus 160 ~~a~~~~ 166 (213)
T 1hh8_A 160 DKAMECV 166 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444444
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.62 E-value=3.5e-07 Score=76.25 Aligned_cols=162 Identities=8% Similarity=-0.051 Sum_probs=120.5
Q ss_pred CCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CChhhhHH-HHH
Q 038758 97 EGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSWNA-MLA 169 (354)
Q Consensus 97 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~-li~ 169 (354)
+.+...+..+...+...|++++|.+.|++. +.+...+..+...+.+.|++++|...+++... |+...... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 445566777888888999999999999987 44566788888899999999999999998875 54332222 223
Q ss_pred HHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccC
Q 038758 170 GYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLS 249 (354)
Q Consensus 170 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 249 (354)
.+.+.++.++|.+.|++.. .. -+.+...+..+...+...|+.++|...+..+.+....
T Consensus 194 ~l~~~~~~~~a~~~l~~al--~~-~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~------------------- 251 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQV--AE-NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT------------------- 251 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHH--HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------
T ss_pred HHHhhcccCccHHHHHHHH--hc-CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc-------------------
Confidence 3567778888888888775 22 2234566777788888899999999988888877531
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038758 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280 (354)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 280 (354)
..+...+..+...+...|+.++|...|++-.
T Consensus 252 ~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 252 AADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp GGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 1135678888899999999999888887754
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.61 E-value=1.1e-07 Score=89.25 Aligned_cols=166 Identities=8% Similarity=-0.059 Sum_probs=128.6
Q ss_pred hccCChhhHHHHHHHHH--------HhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhc
Q 038758 76 SELKDYRVGKDVYDYMI--------SIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKC 143 (354)
Q Consensus 76 ~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~ 143 (354)
...|++++|.+.++... +.. +.+...+..+..++...|++++|.+.|++. +.+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 78899999999999988 332 456678888999999999999999999988 44667888899999999
Q ss_pred CchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCC-CcchHHHHHHHhhhhcCccccch
Q 038758 144 RYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP-NTISLSGVLAACAQVKGVKLGKA 219 (354)
Q Consensus 144 ~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~ 219 (354)
|++++|...|++..+ | +...|..+..++.+.|++++ .+.|++.. . +.| +...+..+-.++.+.|+.++|..
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al--~--~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVW--S--TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHH--H--HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHH--H--hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999988764 3 56778888899999999999 99999886 2 233 35677788888888888888888
Q ss_pred hhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCC
Q 038758 220 IHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ 268 (354)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 268 (354)
.++...+... .+...|..+..++...++
T Consensus 556 ~~~~al~l~P---------------------~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSR---------------------HFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTST---------------------THHHHHHHHHHHTC----
T ss_pred HHHhhcccCc---------------------ccHHHHHHHHHHHHccCC
Confidence 8877766542 234566666666655444
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.61 E-value=5.3e-07 Score=69.14 Aligned_cols=153 Identities=10% Similarity=0.037 Sum_probs=74.6
Q ss_pred hHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CChhhhHHHHHH-HHhCCCh
Q 038758 105 PLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSWNAMLAG-YALGGFR 177 (354)
Q Consensus 105 ~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~-~~~~~~~ 177 (354)
.+...+...|++++|...|++. +.+...+..+...+.+.|++++|...|++... |+...+...... +.+.++.
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~ 90 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAE 90 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhccc
Confidence 3344455555555555555554 23344455555555555555555555555543 222111111101 1122222
Q ss_pred hHHHHHHHHHHhhhcCCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchH
Q 038758 178 EEVTNLLDEMEMIQTDMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVW 256 (354)
Q Consensus 178 ~~a~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 256 (354)
.+|...++... . ..|+ ...+..+..++...|++++|...+..+.+.... ..+...+
T Consensus 91 ~~a~~~~~~al--~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-------------------~~~~~a~ 147 (176)
T 2r5s_A 91 SPELKRLEQEL--A--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLG-------------------AQDGEVK 147 (176)
T ss_dssp CHHHHHHHHHH--H--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-------------------TTTTHHH
T ss_pred chHHHHHHHHH--H--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc-------------------cChHHHH
Confidence 33455555554 1 2232 444555555566666666666666655554320 1123456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 038758 257 NSIISAFVRSGQVVDALDLLRDVI 280 (354)
Q Consensus 257 ~~li~~~~~~g~~~~a~~~~~~m~ 280 (354)
..+...+...|+.++|...|++..
T Consensus 148 ~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 148 KTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcHHHHHHHHH
Confidence 666666666677766766666554
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.60 E-value=1.7e-07 Score=86.07 Aligned_cols=144 Identities=8% Similarity=-0.048 Sum_probs=100.9
Q ss_pred cCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHH
Q 038758 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGL 122 (354)
Q Consensus 43 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 122 (354)
.|++++|.+.+++..+.. +-+...+..+...+...|++++|.+.++...+.. +.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 477888888888887653 2345667788888888899999999998888764 45577788888889999999999988
Q ss_pred HHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhC---CChhHHHHHHHHHH
Q 038758 123 FEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALG---GFREEVTNLLDEME 188 (354)
Q Consensus 123 ~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~ 188 (354)
|++. +.+...+..+...|.+.|++++|.+.|++..+ .+...+..+...+... |++++|.+.+++..
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 8887 44566788888888999999999988887653 3456777888888888 88889999888886
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.59 E-value=5.7e-08 Score=72.52 Aligned_cols=85 Identities=14% Similarity=0.025 Sum_probs=56.0
Q ss_pred HHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHH
Q 038758 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEIT 119 (354)
Q Consensus 40 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 119 (354)
+...|++++|+..++...... +-+...+..+...|.+.|++++|.+.|+...+.. +-+..+|..+..+|.+.|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 445567777777777665432 1223345566667777777777777777777664 44566777777777777777777
Q ss_pred HHHHHhh
Q 038758 120 SGLFEEM 126 (354)
Q Consensus 120 ~~~~~~~ 126 (354)
...|++.
T Consensus 85 ~~~~~~a 91 (150)
T 4ga2_A 85 VECYRRS 91 (150)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776664
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.59 E-value=4.4e-07 Score=75.60 Aligned_cols=162 Identities=11% Similarity=-0.030 Sum_probs=125.4
Q ss_pred cCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh---ccccchhh-HHH
Q 038758 62 RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM---DQDFLVNN-SLI 137 (354)
Q Consensus 62 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~-~li 137 (354)
+.+...+..+...+...|++++|...|+...+.. +-+...+..+..++.+.|++++|...+++. .|+..... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3344556777778889999999999999998875 556778999999999999999999999998 33332222 222
Q ss_pred HHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCC-CCcchHHHHHHHhhhhcC
Q 038758 138 DFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ-PNTISLSGVLAACAQVKG 213 (354)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-p~~~t~~~ll~~~~~~~~ 213 (354)
..+.+.++.++|...+++... | +...+..+...+...|++++|.+.|++.. ..... .+...+..+...+...|+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l--~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHL--RXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHH--hcccccccchHHHHHHHHHHHcCC
Confidence 346677888888888877653 4 56778889999999999999999999997 33221 235678889999999999
Q ss_pred ccccchhhhHhhh
Q 038758 214 VKLGKAIHGYVLR 226 (354)
Q Consensus 214 ~~~a~~~~~~~~~ 226 (354)
.+.+...+++...
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9988887766543
No 106
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.59 E-value=9.3e-07 Score=73.83 Aligned_cols=65 Identities=6% Similarity=-0.189 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHhCCChhHHHHHHHHHHhhh--cCCCCC-cchHHHHHHHhhhhcCcccc-chhhhHhhh
Q 038758 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQ--TDMQPN-TISLSGVLAACAQVKGVKLG-KAIHGYVLR 226 (354)
Q Consensus 162 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~p~-~~t~~~ll~~~~~~~~~~~a-~~~~~~~~~ 226 (354)
.+|+.+...|.+.|++++|.+.+++..... .+..+. ..+|..+..++.+.|+.++| ...++....
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 466667777777777777777777664111 111111 45566777777777777777 665665544
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.58 E-value=3.7e-07 Score=72.16 Aligned_cols=156 Identities=9% Similarity=-0.025 Sum_probs=106.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhhhcCCCCC-cchHHH----------------HHHHhhhhcCccccchhhhHhhhhcc
Q 038758 167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPN-TISLSG----------------VLAACAQVKGVKLGKAIHGYVLRHHI 229 (354)
Q Consensus 167 li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-~~t~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~~~ 229 (354)
....+.+.|++++|...|+... . ..|+ ...+.. +..++.+.|++++|...++...+..
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al--~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 84 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTI--A--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA- 84 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH--H--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHCCCHHHHHHHHHHHH--H--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
Confidence 3345566777777777777765 2 2232 223333 6667778888888888887777764
Q ss_pred ccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCC-HhhHHHHHHHhhccCcc----
Q 038758 230 HLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPN-TVTIVSVLPACLKLAAL---- 304 (354)
Q Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~---- 304 (354)
+.+...|..+...+...|++++|+..|++..+. .|+ ...+..+-..+...|+.
T Consensus 85 --------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~ 142 (208)
T 3urz_A 85 --------------------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKK 142 (208)
T ss_dssp --------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHH
Confidence 346788999999999999999999999999875 454 45666666666554432
Q ss_pred -----cCccccch--hHHHHHHHHHHhcCChhHHHHHhhcCCC--CCcccHHHh
Q 038758 305 -----PQGLGTGS--FVWNALIDMYGRCGAIQKSRKIFVLMPH--KNLVSWNVM 349 (354)
Q Consensus 305 -----~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~l 349 (354)
.....|+. ..+.....++...|++++|...|++..+ |+......+
T Consensus 143 ~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l 196 (208)
T 3urz_A 143 LETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTL 196 (208)
T ss_dssp HHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 22244443 3344556677789999999999999887 776555443
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.52 E-value=1.6e-06 Score=68.63 Aligned_cols=171 Identities=9% Similarity=-0.082 Sum_probs=122.5
Q ss_pred HHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcC----ChhHHHHHH
Q 038758 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG----RMEITSGLF 123 (354)
Q Consensus 48 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~ 123 (354)
+|++.|++..+.| +...+..+-..+...+++++|.+.|+...+.| ++..+..|-..|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4666777777654 55667777777777888888888888887765 45566667777776 6 788888888
Q ss_pred Hhh--ccccchhhHHHHHHHh----cCchhHHHHHhccCCCCC-----hhhhHHHHHHHHh----CCChhHHHHHHHHHH
Q 038758 124 EEM--DQDFLVNNSLIDFYAK----CRYLKVSHCKFSKIKQKD-----LVSWNAMLAGYAL----GGFREEVTNLLDEME 188 (354)
Q Consensus 124 ~~~--~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~-----~~~~~~li~~~~~----~~~~~~a~~~~~~m~ 188 (354)
++. ..+...+..|...|.. .+++++|...|++..+.+ ...+..|-..|.. .+++++|...|+...
T Consensus 77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 77 EKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 877 3455566777777776 788888988888777533 5778888888888 788999999999886
Q ss_pred hhhcCCCCCcchHHHHHHHhhhh-c-----CccccchhhhHhhhhcc
Q 038758 189 MIQTDMQPNTISLSGVLAACAQV-K-----GVKLGKAIHGYVLRHHI 229 (354)
Q Consensus 189 ~~~~~~~p~~~t~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~~ 229 (354)
.. ..+...+..+-..|... | +.++|...++...+.|.
T Consensus 157 --~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 --SL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp --HT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred --Hc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 44 22334555555555432 2 67888888877777664
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.52 E-value=8.7e-07 Score=70.91 Aligned_cols=167 Identities=7% Similarity=-0.114 Sum_probs=100.9
Q ss_pred ccHHHHHHHHhccCChhhHHHHHHHHHHhccC-C-CceehhhHHHHHHhcCChhHHHHHHHhh---ccccc----hhhHH
Q 038758 66 FVCPKVYKACSELKDYRVGKDVYDYMISIKFE-G-NACVKRPLLDLFIKCGRMEITSGLFEEM---DQDFL----VNNSL 136 (354)
Q Consensus 66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~-~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~----~~~~l 136 (354)
..+..+...+...|++++|...|+.+.+.... | ....+..+..+|.+.|++++|...|+++ .|+.. .+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 34555666788899999999999999876311 1 1246777888999999999999999987 33322 33334
Q ss_pred HHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcc-h---------------
Q 038758 137 IDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI-S--------------- 200 (354)
Q Consensus 137 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~-t--------------- 200 (354)
..++.+.+.. .+ ..|..+-..+...|++++|...|++.. . ..|+.. .
T Consensus 85 g~~~~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~A~~~~~~~l--~--~~P~~~~a~~a~~~l~~~~~~~~ 147 (225)
T 2yhc_A 85 GLTNMALDDS-----AL--------QGFFGVDRSDRDPQQARAAFSDFSKLV--R--GYPNSQYTTDATKRLVFLKDRLA 147 (225)
T ss_dssp HHHHHHHHC---------------------------CCHHHHHHHHHHHHHH--T--TCTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhh-----hh--------hhhhccchhhcCcHHHHHHHHHHHHHH--H--HCcCChhHHHHHHHHHHHHHHHH
Confidence 4444432100 00 001111122223344445555554443 1 112211 1
Q ss_pred --HHHHHHHhhhhcCccccchhhhHhhhhcccccc-------------ccchhHHHHHHhcccC
Q 038758 201 --LSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST-------------ACGFVICSCSVFNQLS 249 (354)
Q Consensus 201 --~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~~a~~~~~~~~ 249 (354)
...+...+.+.|+++.|...++.+.+.....+. +.|+.++|...++.+.
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 124566788999999999999999887654331 8899999999998764
No 110
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.48 E-value=1.3e-06 Score=68.89 Aligned_cols=137 Identities=10% Similarity=0.010 Sum_probs=98.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHh
Q 038758 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIK 112 (354)
Q Consensus 33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 112 (354)
+..+-..+...|++++|...|++. +.|+...+..+...+...|++++|.+.++...+.. +.+...+..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 455666788899999999999877 35677888889999999999999999999988775 5567788888899999
Q ss_pred cCChhHHHHHHHhhc---cccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 113 CGRMEITSGLFEEMD---QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 113 ~g~~~~a~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
.|++++|.+.|++.. |+..... +...|. .........+..+...+.+.|++++|.+.|+...
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLID-----YKILGL---------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEE-----CGGGTB---------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCCccHHH-----HHHhcc---------ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999998887751 1100000 000000 0000123567778888888888989988888886
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.48 E-value=2.5e-06 Score=71.74 Aligned_cols=156 Identities=6% Similarity=-0.031 Sum_probs=119.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcC-----CcccHHHHHHHHhccCChhhHHHHHHHHHHhccC---C--Cce
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRP-----DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFE---G--NAC 101 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~---~--~~~ 101 (354)
.|+.....|...|++++|.+.|.+..+..... -..+|+.+...|...|++++|...|+...+.-.. + ...
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 67888888999999999999999876542111 1346788888899999999999999988765211 1 135
Q ss_pred ehhhHHHHHHhcCChhHHHHHHHhh----cc------ccchhhHHHHHHHhcCchhHHHHHhccCCC-----CC----hh
Q 038758 102 VKRPLLDLFIKCGRMEITSGLFEEM----DQ------DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-----KD----LV 162 (354)
Q Consensus 102 ~~~~li~~~~~~g~~~~a~~~~~~~----~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~ 162 (354)
++..+..+|.. |++++|...|++. +. ...++..+...|.+.|++++|...|++... ++ ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 67788888988 9999999999887 11 145677888999999999999999987753 11 22
Q ss_pred hhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 163 SWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 163 ~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
.+..+...+...|++++|...|++..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 56666677788899999999999873
No 112
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.48 E-value=2e-06 Score=61.11 Aligned_cols=93 Identities=15% Similarity=0.240 Sum_probs=73.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|..+++.+.+.. +.+..++..+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 46667778888899999999998887754 3355667778888888888999988888888764 456667778888888
Q ss_pred hcCChhHHHHHHHhh
Q 038758 112 KCGRMEITSGLFEEM 126 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~ 126 (354)
..|++++|...|++.
T Consensus 89 ~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 89 KQGDYDEAIEYYQKA 103 (125)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHH
Confidence 888888888887775
No 113
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.47 E-value=4e-06 Score=77.84 Aligned_cols=222 Identities=7% Similarity=-0.033 Sum_probs=148.9
Q ss_pred hHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHH-HHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCC
Q 038758 83 VGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITS-GLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157 (354)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 157 (354)
.+..+|++.+... +-+...|-..+..+...|+.++|. ++|++. +.+...|-..+...-+.|++++|.++|+++.
T Consensus 327 Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 327 RMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3456677777652 556677777777788888888886 888876 3344556667777778888888888887765
Q ss_pred C-------------CC------------hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhc--CCCCCcchHHHHHHHhhh
Q 038758 158 Q-------------KD------------LVSWNAMLAGYALGGFREEVTNLLDEMEMIQT--DMQPNTISLSGVLAACAQ 210 (354)
Q Consensus 158 ~-------------~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~p~~~t~~~ll~~~~~ 210 (354)
. |+ ...|-..+....+.|..+.|..+|.... +. ...+......+.+.-. .
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~--~~~~~~~~~lyi~~A~lE~~-~ 482 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR--RLKKLVTPDIYLENAYIEYH-I 482 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH--HTGGGSCTHHHHHHHHHHHT-T
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhcCCCChHHHHHHHHHHHH-h
Confidence 3 21 2246666666677788888888888886 43 1222222222222211 1
Q ss_pred hcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhh
Q 038758 211 VKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290 (354)
Q Consensus 211 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 290 (354)
.++.+.|..+|+..++.- +.+...|...+......|+.+.|..+|++.......+..
T Consensus 483 ~~d~e~Ar~ife~~Lk~~---------------------p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~-- 539 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKYF---------------------ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL-- 539 (679)
T ss_dssp TSCCHHHHHHHHHHHHHH---------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH--
T ss_pred CCCHHHHHHHHHHHHHHC---------------------CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH--
Confidence 244778888887777653 345566778888888889999999999998765321111
Q ss_pred HHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC--CCcccHHHhhh
Q 038758 291 IVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH--KNLVSWNVMIS 351 (354)
Q Consensus 291 ~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~ 351 (354)
...+|...++.-.+.|+.+.+.++.+++.+ |+......+++
T Consensus 540 --------------------~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ 582 (679)
T 4e6h_A 540 --------------------LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTN 582 (679)
T ss_dssp --------------------HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 223588888888889999999999998886 66555444443
No 114
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.46 E-value=1.8e-06 Score=64.97 Aligned_cols=93 Identities=10% Similarity=0.024 Sum_probs=71.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|..+-..+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 56777778888899999999888887753 3356667777778888888888888888888764 445667777777788
Q ss_pred hcCChhHHHHHHHhh
Q 038758 112 KCGRMEITSGLFEEM 126 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~ 126 (354)
..|++++|.+.|++.
T Consensus 93 ~~~~~~~A~~~~~~a 107 (166)
T 1a17_A 93 ALGKFRAALRDYETV 107 (166)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHH
Confidence 888888887777664
No 115
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.46 E-value=1.7e-07 Score=69.88 Aligned_cols=136 Identities=4% Similarity=-0.102 Sum_probs=98.9
Q ss_pred HHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchh
Q 038758 72 YKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLK 147 (354)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~ 147 (354)
-..+...|++++|...++...... +.+...+..+...|.+.|++++|.+.|++. +.+..+|..+..+|.+.|+++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 344566788888888888766542 334556778889999999999999999987 556778889999999999999
Q ss_pred HHHHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHH-HHHHHhhhcCCCCC-cchHHHHHHHhhhhc
Q 038758 148 VSHCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNL-LDEMEMIQTDMQPN-TISLSGVLAACAQVK 212 (354)
Q Consensus 148 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~-~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~ 212 (354)
+|...|++..+ | +...|..+...|.+.|++++|.+. ++... .+.|+ ...|...-..+.+.|
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al----~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA----KLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH----HHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH----HhCcCCHHHHHHHHHHHHHhC
Confidence 99999987764 4 466788888889999998776665 46665 23454 344554444444444
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.45 E-value=7.8e-07 Score=81.70 Aligned_cols=147 Identities=7% Similarity=-0.136 Sum_probs=100.9
Q ss_pred cCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHh
Q 038758 78 LKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKF 153 (354)
Q Consensus 78 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~ 153 (354)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.|++. +.+...+..+...|...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478899999999887764 445778889999999999999999999987 445667788888899999999999988
Q ss_pred ccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhh---cCccccchhhhHhhhh
Q 038758 154 SKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV---KGVKLGKAIHGYVLRH 227 (354)
Q Consensus 154 ~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~---~~~~~a~~~~~~~~~~ 227 (354)
++..+ .+...+..+...+.+.|++++|.+.|++.. ... +.+...+..+..++... |+.++|...++...+.
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAH--QLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 87653 346678888888899999999999998886 321 22355677777778888 7888888888777766
Q ss_pred c
Q 038758 228 H 228 (354)
Q Consensus 228 ~ 228 (354)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 5
No 117
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.43 E-value=3.6e-05 Score=64.18 Aligned_cols=222 Identities=9% Similarity=0.004 Sum_probs=159.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCcCCccc-HHHHHHHHhccC--ChhhHHHHHHHHHHhccCCCceehhhHHHHH--
Q 038758 36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFV-CPKVYKACSELK--DYRVGKDVYDYMISIKFEGNACVKRPLLDLF-- 110 (354)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-- 110 (354)
+.....+....++|+++.+.+... .|+..| |+.--..+...+ +++++.++++.+.+.+ +.+..+|+.--.++
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHH
Confidence 333334445556899999999875 455544 777666777777 9999999999999875 55666776655555
Q ss_pred --Hhc---CChhHHHHHHHhh----ccccchhhHHHHHHHhcCchh--HHHHHhccCCC---CChhhhHHHHHHHHhCCC
Q 038758 111 --IKC---GRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLK--VSHCKFSKIKQ---KDLVSWNAMLAGYALGGF 176 (354)
Q Consensus 111 --~~~---g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~--~a~~~~~~~~~---~~~~~~~~li~~~~~~~~ 176 (354)
... ++++++.++++++ +.+-.+|+.-...+.+.|.++ ++.+.++++.+ .|...|+.-...+.+.+.
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGG
T ss_pred HHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 555 7899999999998 556778888777888888888 89998888875 355566666666666666
Q ss_pred ------hhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccc-cchhhhHhhhhccccccccchhHHHHHHhcccC
Q 038758 177 ------REEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKL-GKAIHGYVLRHHIHLSTACGFVICSCSVFNQLS 249 (354)
Q Consensus 177 ------~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 249 (354)
++++++.++.+. .. -+-|...|+..-..+.+.|+... +..+...+.+.+.. .
T Consensus 196 ~~~~~~~~eEl~~~~~aI--~~-~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~------------------~ 254 (306)
T 3dra_A 196 LATDNTIDEELNYVKDKI--VK-CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKD------------------Q 254 (306)
T ss_dssp GCCHHHHHHHHHHHHHHH--HH-CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGT------------------E
T ss_pred cchhhhHHHHHHHHHHHH--Hh-CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCC------------------C
Confidence 788888888886 32 23345667777666777666433 44455544443200 0
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038758 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281 (354)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (354)
..+...+..+...|.+.|+.++|.++++.+.+
T Consensus 255 ~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 255 VTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp ESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 34677888999999999999999999999975
No 118
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.41 E-value=4.4e-06 Score=60.13 Aligned_cols=110 Identities=5% Similarity=-0.034 Sum_probs=84.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+...+..+..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 67778888899999999999999988764 3356678888888889999999999999988764 456778888888899
Q ss_pred hcCChhHHHHHHHhh----ccccchhhHHHHHHHhc
Q 038758 112 KCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKC 143 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~ 143 (354)
+.|++++|.+.|++. +.+...+..+...+.+.
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 999999999888876 22334444444444443
No 119
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.40 E-value=1.2e-05 Score=74.75 Aligned_cols=230 Identities=9% Similarity=-0.036 Sum_probs=164.6
Q ss_pred hHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHH-HHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHh
Q 038758 47 EEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGK-DVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEE 125 (354)
Q Consensus 47 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 125 (354)
+.+..+|++.... ++-+...|......+...|+.+.|. ++|+..... ++.+...|-..+...-+.|+++.|.++|++
T Consensus 326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3456778887765 2446666777777778889999996 999998864 355666677888888999999999999998
Q ss_pred hc--------------c------------ccchhhHHHHHHHhcCchhHHHHHhccCCCC-ChhhhHHHH---HHHHhC-
Q 038758 126 MD--------------Q------------DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK-DLVSWNAML---AGYALG- 174 (354)
Q Consensus 126 ~~--------------~------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li---~~~~~~- 174 (354)
+- | ...+|...+....+.|+.+.|.++|.+..+. +..++...+ ..-.+.
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence 82 2 1236777888888899999999999887642 222232222 222233
Q ss_pred CChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcc
Q 038758 175 GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVV 254 (354)
Q Consensus 175 ~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 254 (354)
++.+.|.++|+... +. .+-+...+...+......|+.+.|+.+|+...+...+. .....
T Consensus 484 ~d~e~Ar~ife~~L--k~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~------------------~~~~~ 542 (679)
T 4e6h_A 484 KDTKTACKVLELGL--KY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS------------------HLLKM 542 (679)
T ss_dssp SCCHHHHHHHHHHH--HH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST------------------THHHH
T ss_pred CCHHHHHHHHHHHH--HH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH------------------HHHHH
Confidence 45899999999987 33 33344445667777777888899999888877764310 11346
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhcc
Q 038758 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKL 301 (354)
Q Consensus 255 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 301 (354)
.|...+.--.+.|+.+.+..+.+++.+. .|+......++.-|.-.
T Consensus 543 lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry~~~ 587 (679)
T 4e6h_A 543 IFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKYKVL 587 (679)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHTCBT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHhcCC
Confidence 7888888888999999999999999876 56666666666666433
No 120
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.39 E-value=3.1e-06 Score=66.96 Aligned_cols=176 Identities=9% Similarity=-0.087 Sum_probs=132.5
Q ss_pred hhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh--ccccchhhHHHHHHHhcC----chhHHHHHhcc
Q 038758 82 RVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM--DQDFLVNNSLIDFYAKCR----YLKVSHCKFSK 155 (354)
Q Consensus 82 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--~~~~~~~~~li~~~~~~~----~~~~a~~~~~~ 155 (354)
.+|.+.|+...+.| ++..+..|-..|...+++++|.+.|++. ..+...+..|...|.. + +.++|...|++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 35677888877764 6677888999999999999999999998 4456677788888888 7 89999999988
Q ss_pred CCC-CChhhhHHHHHHHHh----CCChhHHHHHHHHHHhhhcCCC-CCcchHHHHHHHhhh----hcCccccchhhhHhh
Q 038758 156 IKQ-KDLVSWNAMLAGYAL----GGFREEVTNLLDEMEMIQTDMQ-PNTISLSGVLAACAQ----VKGVKLGKAIHGYVL 225 (354)
Q Consensus 156 ~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~-p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~ 225 (354)
..+ .+...+..|-..|.. .+++++|.++|+... ..|.. .+...+..+-..|.. .++.++|...++...
T Consensus 79 A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~--~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 79 AVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAA--RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT--SSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH--HcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 765 356677778888877 889999999999987 55432 114556666666666 567777777777766
Q ss_pred hhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcCcC
Q 038758 226 RHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS-G-----QVVDALDLLRDVIVANVK 285 (354)
Q Consensus 226 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~g~~ 285 (354)
+.+ .+...+..|-..|.+- | +.++|...|++..+.|..
T Consensus 157 ~~~----------------------~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 157 SLS----------------------RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HTS----------------------CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HcC----------------------CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 541 2445666777777653 3 899999999999988743
No 121
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.39 E-value=4.1e-06 Score=59.93 Aligned_cols=112 Identities=11% Similarity=0.005 Sum_probs=80.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|..+...+...|++++|...+++..... +.+...+..+...+...|++++|.+.++...+.. +.+...+..+..++.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 56677778888899999999998887753 3355667777888888889999999888888764 445667777888888
Q ss_pred hcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCc
Q 038758 112 KCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRY 145 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~ 145 (354)
..|++++|...|++. +.+...+..+..++.+.|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 888888888887775 2233344444444444443
No 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.37 E-value=1.5e-06 Score=72.19 Aligned_cols=187 Identities=7% Similarity=-0.087 Sum_probs=120.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.+..+-..+.+.|++++|...|++..+.. +-+...|..+...+...|++++|.+.++...+.. +.+...+..+..+|.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 45667778889999999999999998863 2356678888889999999999999999988764 556778889999999
Q ss_pred hcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHH
Q 038758 112 KCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 187 (354)
..|++++|...|++. +.+...+...+....+..........-......+......+ ..+ ..|++++|.+.++..
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~~~~~a 161 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYL-TRL-IAAERERELEECQRN 161 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHHHTTTSGG
T ss_pred HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHHHHHHHhh
Confidence 999999999999886 22333344344333333322222222222222333333322 322 257888888887766
Q ss_pred HhhhcCCCCCcchHHHHHHH-hhhh-cCccccchhhhHhhh
Q 038758 188 EMIQTDMQPNTISLSGVLAA-CAQV-KGVKLGKAIHGYVLR 226 (354)
Q Consensus 188 ~~~~~~~~p~~~t~~~ll~~-~~~~-~~~~~a~~~~~~~~~ 226 (354)
. ...|+......-+.. +.+. +..+++..+|....+
T Consensus 162 l----~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 162 H----EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp G----TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred h----ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4 235554333333322 2222 445666766665554
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.36 E-value=4.2e-06 Score=60.17 Aligned_cols=93 Identities=9% Similarity=0.060 Sum_probs=71.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|...-..|.+.|++++|++.|++..+.. +.+...|..+..++...|++++|.+.++...+.+ +.+...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 56667777888888888888888887754 3355667777778888888888888888887765 556667788888888
Q ss_pred hcCChhHHHHHHHhh
Q 038758 112 KCGRMEITSGLFEEM 126 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~ 126 (354)
..|++++|.+.|++.
T Consensus 93 ~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 93 AMREWSKAQRAYEDA 107 (126)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHH
Confidence 888888888887765
No 124
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.36 E-value=1.2e-06 Score=68.52 Aligned_cols=163 Identities=7% Similarity=-0.025 Sum_probs=103.8
Q ss_pred HhcCchhHHHH---HhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhh--hcCCCC-CcchHHHHHHHhhhhcCc
Q 038758 141 AKCRYLKVSHC---KFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMI--QTDMQP-NTISLSGVLAACAQVKGV 214 (354)
Q Consensus 141 ~~~~~~~~a~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~p-~~~t~~~ll~~~~~~~~~ 214 (354)
...|++++|.+ .+..-+......+..+...+...|++++|.+.+++.... ..+..| ....+..+-..+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34566777777 554433334567778888888889999998888877521 112222 245566777778888888
Q ss_pred cccchhhhHhhhhccccccccchhHHHHHHhcccC-CC--CcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCc-CCCHhh
Q 038758 215 KLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLS-TR--DVVVWNSIISAFVRSGQVVDALDLLRDVIVANV-KPNTVT 290 (354)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t 290 (354)
++|...+....+... ... .+ ....+..+...+...|++++|...+++..+..- .++...
T Consensus 83 ~~A~~~~~~al~~~~-----------------~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 145 (203)
T 3gw4_A 83 DAARRCFLEERELLA-----------------SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVA 145 (203)
T ss_dssp HHHHHHHHHHHHHHH-----------------HSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHH-----------------HcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHH
Confidence 888888766555421 111 11 134577788889999999999999998865311 112111
Q ss_pred HHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 291 IVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 291 ~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
-..++..+...+.+.|++++|.+.+++..+
T Consensus 146 --------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 146 --------------------IACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp --------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 122356777888888888888888776553
No 125
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.35 E-value=1.5e-06 Score=67.97 Aligned_cols=147 Identities=6% Similarity=-0.117 Sum_probs=86.9
Q ss_pred HhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhc----c-CCCceehhhHHHHHHhcCC
Q 038758 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIK----F-EGNACVKRPLLDLFIKCGR 115 (354)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~-~~~~~~~~~li~~~~~~g~ 115 (354)
...|++++|.++++.... ........+..+...+...|++++|...++...+.- . +....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 457899999996555543 222345567788888889999999999998887631 1 2234567778888888999
Q ss_pred hhHHHHHHHhh------cc-c----cchhhHHHHHHHhcCchhHHHHHhccCCC-----CC----hhhhHHHHHHHHhCC
Q 038758 116 MEITSGLFEEM------DQ-D----FLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-----KD----LVSWNAMLAGYALGG 175 (354)
Q Consensus 116 ~~~a~~~~~~~------~~-~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~ 175 (354)
+++|.+.+++. .+ + ...+..+...+...|++++|...+++... .+ ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99998887764 01 1 12234445555555555555555544321 11 112344445555555
Q ss_pred ChhHHHHHHHHHH
Q 038758 176 FREEVTNLLDEME 188 (354)
Q Consensus 176 ~~~~a~~~~~~m~ 188 (354)
++++|.+.+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555555443
No 126
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.34 E-value=1.7e-06 Score=66.12 Aligned_cols=111 Identities=6% Similarity=0.021 Sum_probs=60.0
Q ss_pred ccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHH-HHhcCch--hHH
Q 038758 77 ELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDF-YAKCRYL--KVS 149 (354)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~-~~~~~~~--~~a 149 (354)
..|++++|...++...+.. +.+...+..+..+|...|++++|...|++. +.+...+..+... +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 3444555555555444432 333444455555555555555555555544 2233344444444 4455555 555
Q ss_pred HHHhccCCC--C-ChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 150 HCKFSKIKQ--K-DLVSWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 150 ~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
...|++... | +...+..+...+.+.|++++|...|+...
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 555554432 3 45667778888888899999999888876
No 127
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.33 E-value=6.9e-06 Score=61.02 Aligned_cols=93 Identities=10% Similarity=-0.029 Sum_probs=52.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|..+-..+.+.|++++|...|++..... +-+...|..+..++...|++++|.+.|+...+.. +.++..|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 44445555556666666666666665543 2234445555555566666666666666665543 334555555666666
Q ss_pred hcCChhHHHHHHHhh
Q 038758 112 KCGRMEITSGLFEEM 126 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~ 126 (354)
+.|++++|...|++.
T Consensus 116 ~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 116 RLKAPLKAKECFELV 130 (151)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 666666666555543
No 128
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.30 E-value=6.3e-06 Score=67.40 Aligned_cols=183 Identities=9% Similarity=-0.091 Sum_probs=130.0
Q ss_pred hcCChhHHHHHHHHHHhCCCcCCcccHHHH-------HHHHhccCChhhHHHHHHHHHHhccCCCce-------------
Q 038758 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKV-------YKACSELKDYRVGKDVYDYMISIKFEGNAC------------- 101 (354)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-------l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~------------- 101 (354)
..++...|.+.|.+..+.. +-....|..+ ..++.+.++..++...+..-. ++.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l--~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV--QISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT--TCCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh--cCChhhhhhhhccCCccccc
Confidence 6899999999999999864 2233446666 455555555555555444433 3344321
Q ss_pred ---------ehhhHHHHHHhcCChhHHHHHHHhh---ccccchhhHHHHHHHhcCchhHHHHHhccCCC-CC----hhhh
Q 038758 102 ---------VKRPLLDLFIKCGRMEITSGLFEEM---DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-KD----LVSW 164 (354)
Q Consensus 102 ---------~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~----~~~~ 164 (354)
..-.+...+...|++++|.++|+.+ .|+......+...+.+.+++++|+..|+.... ++ ...+
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~ 174 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAG 174 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHH
Confidence 1123567889999999999999998 33222556666789999999999999987664 22 2356
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCc--chHHHHHHHhhhhcCccccchhhhHhhhhcc
Q 038758 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT--ISLSGVLAACAQVKGVKLGKAIHGYVLRHHI 229 (354)
Q Consensus 165 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 229 (354)
..+-.++.+.|++++|++.|++.. .....|.. ......-.++.+.|+.++|..+|+++.....
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~--~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEAN--DSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH--TSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHh--cCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 778889999999999999999985 43332542 2445556678899999999999999988754
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.28 E-value=3.5e-06 Score=63.37 Aligned_cols=120 Identities=8% Similarity=-0.067 Sum_probs=74.0
Q ss_pred cHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHh
Q 038758 67 VCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAK 142 (354)
Q Consensus 67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~ 142 (354)
.+..+...+...|+++.|...|+...+.. +.+..++..+..++...|++++|...+++. +.+...+..+...+..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 46666777788889999999998888764 456777888888888888888888887775 2233444555555555
Q ss_pred cCchhHHHHHhccCCC--C-ChhhhHH--HHHHHHhCCChhHHHHHHHHH
Q 038758 143 CRYLKVSHCKFSKIKQ--K-DLVSWNA--MLAGYALGGFREEVTNLLDEM 187 (354)
Q Consensus 143 ~~~~~~a~~~~~~~~~--~-~~~~~~~--li~~~~~~~~~~~a~~~~~~m 187 (354)
.|++++|...|++..+ | +...+.. ....+.+.|++++|.+.+...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 5555555555554432 1 2222211 222244445555555555444
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.27 E-value=1.1e-06 Score=67.32 Aligned_cols=117 Identities=9% Similarity=0.018 Sum_probs=93.5
Q ss_pred HHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHH-HHhcCCh--
Q 038758 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDL-FIKCGRM-- 116 (354)
Q Consensus 40 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~-- 116 (354)
+...|++++|...+++..+.. +.+...+..+...+...|++++|...|+...+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 345789999999999988764 3456778888899999999999999999998875 5567778888888 7789998
Q ss_pred hHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC
Q 038758 117 EITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158 (354)
Q Consensus 117 ~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 158 (354)
++|...|++. +.+...+..+...|...|++++|...|++..+
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 9999999987 44567788888999999999999999987753
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.26 E-value=2e-06 Score=71.42 Aligned_cols=93 Identities=9% Similarity=-0.086 Sum_probs=70.7
Q ss_pred CcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHH
Q 038758 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDF 139 (354)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~ 139 (354)
+...+..+...+...|++++|...|+...+.. +.+...+..+..+|.+.|++++|...+++. +.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34456677778888899999999999888764 446777888888888889999988888876 3345566677777
Q ss_pred HHhcCchhHHHHHhccCC
Q 038758 140 YAKCRYLKVSHCKFSKIK 157 (354)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~ 157 (354)
|...|++++|...|++..
T Consensus 82 ~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 777777777777776654
No 132
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.26 E-value=1.9e-05 Score=65.81 Aligned_cols=159 Identities=9% Similarity=-0.033 Sum_probs=105.5
Q ss_pred HHHHHhcCChhHHHHHHHhhc------cc----cchhhHHHHHHHhcCchhHHHHHhccCCC-----CC----hhhhHHH
Q 038758 107 LDLFIKCGRMEITSGLFEEMD------QD----FLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-----KD----LVSWNAM 167 (354)
Q Consensus 107 i~~~~~~g~~~~a~~~~~~~~------~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l 167 (354)
+..+...|++++|..++++.. ++ ...+..+...+...+++++|...|++... ++ ..+|+.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 455666777777777776651 11 11222355556666777777777765432 23 2258888
Q ss_pred HHHHHhCCChhHHHHHHHHHHhhhc---CCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHH
Q 038758 168 LAGYALGGFREEVTNLLDEMEMIQT---DMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCS 243 (354)
Q Consensus 168 i~~~~~~~~~~~a~~~~~~m~~~~~---~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 243 (354)
...|...|++++|...|++..+... +..+. ..++..+...|.+.|++++|...++...+.......
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~---------- 231 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS---------- 231 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB----------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc----------
Confidence 8999999999999999988862111 22222 246778888899999999999988777654321000
Q ss_pred HhcccCCCC-cchHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 038758 244 VFNQLSTRD-VVVWNSIISAFVRSGQ-VVDALDLLRDVIV 281 (354)
Q Consensus 244 ~~~~~~~~~-~~~~~~li~~~~~~g~-~~~a~~~~~~m~~ 281 (354)
.+. ..+|..+-..|.+.|+ +++|.+.|++...
T Consensus 232 ------~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 232 ------MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp ------CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 111 4578888889999995 6999999988764
No 133
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.26 E-value=1.2e-05 Score=56.97 Aligned_cols=98 Identities=12% Similarity=0.167 Sum_probs=76.2
Q ss_pred hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHH
Q 038758 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVIC 240 (354)
Q Consensus 161 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 240 (354)
...|..+...+.+.|++++|.+.++++. ... +.+...+..+...+.+.|++++|...++.+.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------------ 73 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKAL--ELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------------ 73 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------------
Confidence 4567777888888888888888888886 322 2345667777778888888888888887777654
Q ss_pred HHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038758 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282 (354)
Q Consensus 241 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (354)
+.+..++..+...+...|++++|...++++.+.
T Consensus 74 ---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 74 ---------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp ---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345677888889999999999999999998865
No 134
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.25 E-value=7.6e-06 Score=60.81 Aligned_cols=94 Identities=4% Similarity=-0.109 Sum_probs=56.0
Q ss_pred cHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCch
Q 038758 67 VCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL 146 (354)
Q Consensus 67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~ 146 (354)
.+..+...+.+.|++++|.+.|+...+.. +.+...|..+..+|...|++++|...|++.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a-------------------- 96 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVA-------------------- 96 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHH--------------------
Confidence 34555555666666666666666666554 445556666666666666666666665553
Q ss_pred hHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 147 KVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
. .+...+...|..+..+|.+.|++++|.+.|+...
T Consensus 97 ---l----~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 97 ---F----ALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVI 131 (151)
T ss_dssp ---H----HHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---H----hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0 0011234556666677777777777777777665
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.23 E-value=1.8e-05 Score=65.89 Aligned_cols=162 Identities=9% Similarity=-0.032 Sum_probs=111.1
Q ss_pred ehhhHHHHHHhcCChhHHHHHHHhh---ccc-------cchhhHHHHHHHhcCchhHHHHHhccCCC-----CC----hh
Q 038758 102 VKRPLLDLFIKCGRMEITSGLFEEM---DQD-------FLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-----KD----LV 162 (354)
Q Consensus 102 ~~~~li~~~~~~g~~~~a~~~~~~~---~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~----~~ 162 (354)
.+...+..+...|++++|.+.+++. .+. ...+..+...+...|++++|...+++... .+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445566677778888887777654 111 11233455566777888888888765431 12 34
Q ss_pred hhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC-----cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccch
Q 038758 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN-----TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGF 237 (354)
Q Consensus 163 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 237 (354)
+|+.+...|...|++++|...|++... .....|+ ..++..+...|.+.|++++|...++...+.....
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~-~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~------ 229 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILK-QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI------ 229 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc------
Confidence 788899999999999999999998852 1111222 2578888889999999999999998776543210
Q ss_pred hHHHHHHhcccCCC--CcchHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 038758 238 VICSCSVFNQLSTR--DVVVWNSIISAFVRSGQVVDA-LDLLRDVIV 281 (354)
Q Consensus 238 ~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a-~~~~~~m~~ 281 (354)
..+ -..+|..+...|.+.|+.++| ...+++...
T Consensus 230 -----------~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 230 -----------NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp -----------TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -----------CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 011 145678888999999999999 777777653
No 136
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.23 E-value=7e-06 Score=69.96 Aligned_cols=92 Identities=8% Similarity=0.049 Sum_probs=67.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCc----------------ccHHHHHHHHhccCChhhHHHHHHHHHHhc
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH----------------FVCPKVYKACSELKDYRVGKDVYDYMISIK 95 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 95 (354)
.|..+-..+.+.|++++|...|++..+.. |+. ..|..+...+.+.|++++|...++...+..
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 77788888889999999999999988764 333 566677777777777777777777777654
Q ss_pred cCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758 96 FEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 96 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
+.+...+..+..+|...|++++|...|++.
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 256 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKV 256 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 445566666777777777777777666654
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.22 E-value=1.6e-05 Score=65.00 Aligned_cols=185 Identities=8% Similarity=-0.108 Sum_probs=130.6
Q ss_pred ccCChhhHHHHHHHHHHhccCCCceehhhH-------HHHHHhcCChhHHHHHHHhh---cc-------c-cc-------
Q 038758 77 ELKDYRVGKDVYDYMISIKFEGNACVKRPL-------LDLFIKCGRMEITSGLFEEM---DQ-------D-FL------- 131 (354)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~~---~~-------~-~~------- 131 (354)
..++...|.+.|....+.. +-....|..+ ...+...++..++...+.+- .| + .-
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 5789999999999999875 4455667766 45555555555555444433 11 1 11
Q ss_pred -------hhhHHHHHHHhcCchhHHHHHhccCCC--CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC--cch
Q 038758 132 -------VNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN--TIS 200 (354)
Q Consensus 132 -------~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~--~~t 200 (354)
.+-.+...+...|++++|.+.|+.+.. |+......+...+.+.++|++|+..|+... ... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~--~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAG--KWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGG--GCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhh--ccC-CcccHHHH
Confidence 112366788899999999999999874 543355556667889999999999998554 221 221 235
Q ss_pred HHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCC--cchHHHHHHHHHhcCCHHHHHHHHHH
Q 038758 201 LSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRD--VVVWNSIISAFVRSGQVVDALDLLRD 278 (354)
Q Consensus 201 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~ 278 (354)
+..+-.++.+.|++++|...|++...... .|. .......-.++.+.|+.++|..+|++
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~--------------------~P~~~~da~~~~glaL~~lGr~deA~~~l~~ 233 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPA--------------------GEACARAIAWYLAMARRSQGNESAAVALLEW 233 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTT--------------------TTTTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCC--------------------CccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66777789999999999999988764322 143 23556667788899999999999999
Q ss_pred HHHcCcCCC
Q 038758 279 VIVANVKPN 287 (354)
Q Consensus 279 m~~~g~~p~ 287 (354)
+... .|+
T Consensus 234 a~a~--~P~ 240 (282)
T 4f3v_A 234 LQTT--HPE 240 (282)
T ss_dssp HHHH--SCC
T ss_pred HHhc--CCc
Confidence 9876 566
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.20 E-value=2e-05 Score=56.23 Aligned_cols=119 Identities=10% Similarity=-0.016 Sum_probs=84.2
Q ss_pred ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhH
Q 038758 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVI 239 (354)
Q Consensus 160 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 239 (354)
+...+..+...+...|++++|.+.|++.. .. .+.+...+..+...+...|++++|...+....+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------- 76 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAI--EL-NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID----------- 76 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHH--Hc-CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-----------
Confidence 34567777788888888888888888876 32 12345667777777888888888888887777654
Q ss_pred HHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCc
Q 038758 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAA 303 (354)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~ 303 (354)
+.+...|..+...+.+.|++++|...|++..+.. +.+...+..+...+...|+
T Consensus 77 ----------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 77 ----------PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp ----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred ----------ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 3356678888889999999999999999988653 2234444444444444443
No 139
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.18 E-value=1.9e-06 Score=63.91 Aligned_cols=93 Identities=8% Similarity=-0.101 Sum_probs=47.8
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchh
Q 038758 68 CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147 (354)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~ 147 (354)
+..+...+...|++++|...|+...+.. +.+...|..+..+|...|++++|...|++.
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a--------------------- 81 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYG--------------------- 81 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHH---------------------
Confidence 4444445555555555555555555443 334445555555555555555555554442
Q ss_pred HHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 148 VSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
.+ +...+...+..+..++...|++++|.+.|+...
T Consensus 82 --l~----l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 82 --AV----MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp --HH----HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --Hh----cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00 001234445555556666666666666666554
No 140
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.18 E-value=7.6e-05 Score=62.27 Aligned_cols=215 Identities=11% Similarity=0.062 Sum_probs=134.7
Q ss_pred CChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcC--ChhHHHHHHHhh----ccccchhhHHHHHH----Hhc---Cc
Q 038758 79 KDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCG--RMEITSGLFEEM----DQDFLVNNSLIDFY----AKC---RY 145 (354)
Q Consensus 79 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~----~~~~~~~~~li~~~----~~~---~~ 145 (354)
...++|.++++.+.+.+ +-+..+|+.--.++...| ++++++++++.+ +.+..+|+.--..+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 34468999999998775 555667788778888888 999999999887 44555665544333 444 67
Q ss_pred hhHHHHHhccCCC---CChhhhHHHHHHHHhCCChh--HHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcC------c
Q 038758 146 LKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFRE--EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG------V 214 (354)
Q Consensus 146 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~------~ 214 (354)
++++..+++++.+ .+-..|+.-.-.+.+.|.++ ++++.++.+. ... .-|...|+.--..+.+.+. +
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i--~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVI--DTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH--HHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHH--HhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 7788888877764 34455555555566667777 8888888876 332 2234445544444444333 2
Q ss_pred cccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHH-HHHHHHHHHHHcCcCCCHhhHHH
Q 038758 215 KLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV-DALDLLRDVIVANVKPNTVTIVS 293 (354)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~g~~p~~~t~~~ 293 (354)
+++.+.+....+.. +.|...|+-+-..+.+.|+.. ++.++..++.+.+ .+
T Consensus 203 ~eEl~~~~~aI~~~---------------------p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~-~~------- 253 (306)
T 3dra_A 203 DEELNYVKDKIVKC---------------------PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE-KD------- 253 (306)
T ss_dssp HHHHHHHHHHHHHC---------------------SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG-GT-------
T ss_pred HHHHHHHHHHHHhC---------------------CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc-CC-------
Confidence 23333333333222 346677777766666666633 3444555544322 00
Q ss_pred HHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 294 VLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 294 li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
-..+...+..+.+.|.+.|+.++|.++++.+.+
T Consensus 254 --------------~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 254 --------------QVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp --------------EESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 022455688899999999999999999999874
No 141
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.15 E-value=2.4e-05 Score=56.07 Aligned_cols=103 Identities=12% Similarity=0.022 Sum_probs=79.2
Q ss_pred hhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHH
Q 038758 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICS 241 (354)
Q Consensus 162 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a 241 (354)
..+......|.+.|++++|++.|++.. .. -+.+...|..+..++.+.|++++|...++...+..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al--~~-~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------------- 77 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAV--KR-DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD------------- 77 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH--HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH--Hh-CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-------------
Confidence 456677788888888888888888876 22 12345677777788888888888888888777664
Q ss_pred HHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhh
Q 038758 242 CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVT 290 (354)
Q Consensus 242 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 290 (354)
+.+...|..+..++...|++++|++.|++..+. .|+...
T Consensus 78 --------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 116 (126)
T 4gco_A 78 --------SKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--DPSNEE 116 (126)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred --------hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcCCHH
Confidence 346778888999999999999999999999865 565543
No 142
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.15 E-value=2.8e-05 Score=55.74 Aligned_cols=99 Identities=8% Similarity=-0.042 Sum_probs=78.5
Q ss_pred ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhH
Q 038758 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVI 239 (354)
Q Consensus 160 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 239 (354)
+...|..+...+.+.|++++|.+.|++.. .. .+.+...+..+...+...|++++|...++...+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al--~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----------- 80 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAI--KR-NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE----------- 80 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHH--TT-CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-----------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH--Hc-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----------
Confidence 45567788888899999999999999886 32 22345677777778888888888888888877754
Q ss_pred HHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038758 240 CSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282 (354)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (354)
+.+...|..+...+.+.|++++|.+.|++..+.
T Consensus 81 ----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 81 ----------PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp ----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 345677888889999999999999999998765
No 143
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.15 E-value=3.3e-05 Score=56.61 Aligned_cols=93 Identities=10% Similarity=0.032 Sum_probs=73.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.+..+-..+.+.|++++|...|++....+ +.+...|..+...+...|++++|...|+...+.. +.+...+..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 34456667788899999999998888764 3355667777788888899999999998888775 556677888888888
Q ss_pred hcCChhHHHHHHHhh
Q 038758 112 KCGRMEITSGLFEEM 126 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~ 126 (354)
..|++++|.+.|++.
T Consensus 98 ~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 98 QLGDLDGAESGFYSA 112 (142)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 889998888888875
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.14 E-value=2e-05 Score=58.32 Aligned_cols=93 Identities=11% Similarity=0.063 Sum_probs=80.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.+..+-..+.+.|++++|...|++..... +.+...|..+..++...|++++|.+.|+...+.. +.+...+..+..+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 56677788899999999999999998764 3466678888889999999999999999999875 556788899999999
Q ss_pred hcCChhHHHHHHHhh
Q 038758 112 KCGRMEITSGLFEEM 126 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~ 126 (354)
..|++++|.+.|++.
T Consensus 101 ~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 101 QXGELAEAESGLFLA 115 (148)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 999999999998875
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.11 E-value=3.9e-05 Score=53.53 Aligned_cols=93 Identities=12% Similarity=0.038 Sum_probs=69.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++...+.. +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 45666777788888888888888887753 2355667777777888888888888888887764 445667777778888
Q ss_pred hcCChhHHHHHHHhh
Q 038758 112 KCGRMEITSGLFEEM 126 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~ 126 (354)
..|++++|.+.+++.
T Consensus 84 ~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 84 FLNRFEEAKRTYEEG 98 (118)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHH
Confidence 888888888777765
No 146
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.10 E-value=1.7e-05 Score=56.63 Aligned_cols=94 Identities=6% Similarity=0.014 Sum_probs=71.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhcc--CCC----ceehhh
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKF--EGN----ACVKRP 105 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~~~ 105 (354)
.|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++...+... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 46677778888899999999999888764 33556677788888888999999999888887642 122 556777
Q ss_pred HHHHHHhcCChhHHHHHHHhh
Q 038758 106 LLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 106 li~~~~~~g~~~~a~~~~~~~ 126 (354)
+..++...|++++|.+.|++.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHH
Confidence 777888888888888877765
No 147
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=2.4e-05 Score=68.86 Aligned_cols=190 Identities=7% Similarity=-0.109 Sum_probs=133.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCcCCc----------------ccHHHHHHHHhccCChhhHHHHHHHHHHhccC-CCc
Q 038758 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDH----------------FVCPKVYKACSELKDYRVGKDVYDYMISIKFE-GNA 100 (354)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~ 100 (354)
+.+.+.|++++|.+.|....+....... ..+..+...|...|++++|.+.+..+.+.--. ++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 4567889999999999999876422211 12677889999999999999999988764211 111
Q ss_pred ----eehhhHHHHHHhcCChhHHHHHHHhh----------ccccchhhHHHHHHHhcCchhHHHHHhccCCC--------
Q 038758 101 ----CVKRPLLDLFIKCGRMEITSGLFEEM----------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-------- 158 (354)
Q Consensus 101 ----~~~~~li~~~~~~g~~~~a~~~~~~~----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------- 158 (354)
.+.+.+-..+...|+.+.+..++++. .....++..+...|...|++++|..++++...
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 12333444455678999999998887 11234667889999999999999999876541
Q ss_pred C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC----cchHHHHHHHhhhhcCccccchhhhHhhhh
Q 038758 159 K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN----TISLSGVLAACAQVKGVKLGKAIHGYVLRH 227 (354)
Q Consensus 159 ~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 227 (354)
+ ....|..++..|...|++++|...++........+..+ ...+..+...+...++++.|...+....+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 1 23468888999999999999999998876212222211 234555566677788888888777666543
No 148
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.09 E-value=1.6e-05 Score=59.19 Aligned_cols=134 Identities=10% Similarity=0.078 Sum_probs=90.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCc-CC----cccHHHHHHHHhccCChhhHHHHHHHHHHhccC-CC----ce
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVR-PD----HFVCPKVYKACSELKDYRVGKDVYDYMISIKFE-GN----AC 101 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~ 101 (354)
+|..+-..+...|++++|...+++..+.... ++ ...+..+...+...|++++|.+.++...+..-. ++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 5677778888899999999999887664211 11 135677777888888999998888887754211 11 34
Q ss_pred ehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCC--ChhhhHHHHHHHHhCCChhH
Q 038758 102 VKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK--DLVSWNAMLAGYALGGFREE 179 (354)
Q Consensus 102 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~ 179 (354)
.+..+..++...|++++|.+.+++. .++......+ ....+..+...+...|++++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a-----------------------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 147 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKH-----------------------LAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 147 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH-----------------------HHHHHHccchHhHHHHHHHHHHHHHHccCHHH
Confidence 5666777777778888887776653 2222222221 23456677778888888888
Q ss_pred HHHHHHHHH
Q 038758 180 VTNLLDEME 188 (354)
Q Consensus 180 a~~~~~~m~ 188 (354)
|.+.+++..
T Consensus 148 A~~~~~~a~ 156 (164)
T 3ro3_A 148 AMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888765
No 149
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.09 E-value=3e-05 Score=68.27 Aligned_cols=193 Identities=8% Similarity=-0.044 Sum_probs=135.1
Q ss_pred HHHHhccCChhhHHHHHHHHHHhccCC-Cc---------------eehhhHHHHHHhcCChhHHHHHHHhhcc-------
Q 038758 72 YKACSELKDYRVGKDVYDYMISIKFEG-NA---------------CVKRPLLDLFIKCGRMEITSGLFEEMDQ------- 128 (354)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~~~~~~~-~~---------------~~~~~li~~~~~~g~~~~a~~~~~~~~~------- 128 (354)
.+.+...|++++|.+.|..+.+..-.. +. ..+..|...|...|++++|.+.+.+..+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 345678899999999999998764221 11 1266789999999999999999998711
Q ss_pred ---ccchhhHHHHHHHhcCchhHHHHHhccCCC--------C-ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCC-
Q 038758 129 ---DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--------K-DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQ- 195 (354)
Q Consensus 129 ---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~- 195 (354)
...+.+.+-..+...|+.++|..+++.... + -..++..+...+...|++++|..++++......+..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 112333444555567889999888866542 1 134677888999999999999999998762122222
Q ss_pred -CC-cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCC---cchHHHHHHHHHhcCCHH
Q 038758 196 -PN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRD---VVVWNSIISAFVRSGQVV 270 (354)
Q Consensus 196 -p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~ 270 (354)
|. ...+......|...|++++|..+++........ ...|. ...+..+...+...|++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-----------------~~~~~~~~~~~~~~~g~~~~~~~~y~ 233 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS-----------------IYCPTQTVAELDLMSGILHCEDKDYK 233 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------SCCCHHHHHHHHHHHHHHTTSSSCHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc-----------------CCCchHHHHHHHHHHHHHHHHHHhHH
Confidence 21 346788888899999999999998877654321 11221 245666667778889999
Q ss_pred HHHHHHHHHHH
Q 038758 271 DALDLLRDVIV 281 (354)
Q Consensus 271 ~a~~~~~~m~~ 281 (354)
+|...|.+..+
T Consensus 234 ~A~~~~~~a~~ 244 (434)
T 4b4t_Q 234 TAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988877754
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.07 E-value=3.3e-05 Score=55.17 Aligned_cols=93 Identities=10% Similarity=-0.045 Sum_probs=73.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|..+-..+.+.|++++|...|++..+.. +.+...|..+...+...|++++|...++...+.. +.+...+..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 45566677888899999999998888764 3356677888888888889999999888888765 455677888888888
Q ss_pred hcCChhHHHHHHHhh
Q 038758 112 KCGRMEITSGLFEEM 126 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~ 126 (354)
..|++++|...|++.
T Consensus 84 ~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 84 AVKEYASALETLDAA 98 (126)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHH
Confidence 888888888888765
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.04 E-value=4.1e-05 Score=59.63 Aligned_cols=118 Identities=12% Similarity=0.009 Sum_probs=79.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCc-CC--------------cccHHHHHHHHhccCChhhHHHHHHHHHHhcc
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVR-PD--------------HFVCPKVYKACSELKDYRVGKDVYDYMISIKF 96 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 96 (354)
.|..+-..+.+.|++++|...|++..+.... |+ ...|..+...+...|++++|...++...+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 6777778888999999999999998875311 10 1466677777778888888888888877764
Q ss_pred CCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHH
Q 038758 97 EGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSH 150 (354)
Q Consensus 97 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~ 150 (354)
+.+...+..+..+|...|++++|.+.|++. +.+...+..+..++...++.+++.
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777788888888888777765 223334444444444444444443
No 152
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.01 E-value=2.5e-05 Score=54.03 Aligned_cols=92 Identities=21% Similarity=0.141 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCC--CceehhhHHHHH
Q 038758 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEG--NACVKRPLLDLF 110 (354)
Q Consensus 33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~ 110 (354)
|..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+.. +. +...+..+..++
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 4445556677788888888887777653 2344556667777777777888877777777653 33 456667777777
Q ss_pred Hhc-CChhHHHHHHHhh
Q 038758 111 IKC-GRMEITSGLFEEM 126 (354)
Q Consensus 111 ~~~-g~~~~a~~~~~~~ 126 (354)
.+. |++++|.+.+++.
T Consensus 87 ~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARA 103 (112)
T ss_dssp TTCSSCSHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 777 7777777777665
No 153
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.00 E-value=7.2e-05 Score=54.06 Aligned_cols=93 Identities=5% Similarity=-0.091 Sum_probs=73.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|..+-..+...|++++|...|++..... +.+...|..+...+...|+++.|...++...+.. +.+...+..+..++.
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 46667777888899999999988887764 3345667778888888888999988888888765 446677888888888
Q ss_pred hcCChhHHHHHHHhh
Q 038758 112 KCGRMEITSGLFEEM 126 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~ 126 (354)
..|++++|...|++.
T Consensus 89 ~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 89 EMESYDEAIANLQRA 103 (137)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHH
Confidence 888888888888876
No 154
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.00 E-value=1.9e-05 Score=67.26 Aligned_cols=145 Identities=8% Similarity=0.004 Sum_probs=78.8
Q ss_pred CChhHHHHHHHHHHhCCCcC-CcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCC---------------ceehhhHH
Q 038758 44 GYYEEIVNLFYLMIDKGVRP-DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN---------------ACVKRPLL 107 (354)
Q Consensus 44 ~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---------------~~~~~~li 107 (354)
+++++|.+.++...+. .| +...+..+...+.+.|++++|.+.|+...+.. +.+ ...|..+.
T Consensus 127 ~~~~~A~~~~~~a~~~--~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEE--KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEECCCCGGGCCHHH--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHH
Confidence 3444554444433221 22 34457777778888888999988888888764 222 24555555
Q ss_pred HHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHH
Q 038758 108 DLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLL 184 (354)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~ 184 (354)
.+|.+.|++++|...|++. .+ .+...|..+..+|...|++++|...|
T Consensus 204 ~~~~~~g~~~~A~~~~~~a------------------------------l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 253 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKA------------------------------LELDSNNEKGLSRRGEAHLAVNDFELARADF 253 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHH------------------------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH------------------------------HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5555555555555555543 21 23445555555566666666666666
Q ss_pred HHHHhhhcCCCC-CcchHHHHHHHhhhhcCcccc-chhhhHhh
Q 038758 185 DEMEMIQTDMQP-NTISLSGVLAACAQVKGVKLG-KAIHGYVL 225 (354)
Q Consensus 185 ~~m~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a-~~~~~~~~ 225 (354)
++.. . +.| +...+..+..++.+.|+.+++ ..++..+.
T Consensus 254 ~~al--~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 254 QKVL--Q--LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHH--H--HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH--H--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554 1 122 233445555555555555555 33444443
No 155
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.99 E-value=5.2e-05 Score=67.82 Aligned_cols=117 Identities=9% Similarity=-0.006 Sum_probs=93.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCC
Q 038758 36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR 115 (354)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 115 (354)
+-..+.+.|++++|.+.+++..+.. +-+...|..+...+.+.|++++|.+.++...+.. +.+...+..+..+|.+.|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3345667899999999999998863 3356778889999999999999999999999874 5567789999999999999
Q ss_pred hhHHHHHHHhh----ccccchhhHHHHH--HHhcCchhHHHHHhc
Q 038758 116 MEITSGLFEEM----DQDFLVNNSLIDF--YAKCRYLKVSHCKFS 154 (354)
Q Consensus 116 ~~~a~~~~~~~----~~~~~~~~~li~~--~~~~~~~~~a~~~~~ 154 (354)
+++|.+.|++. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999987 3345566666666 888899999999998
No 156
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.98 E-value=0.0011 Score=55.97 Aligned_cols=242 Identities=8% Similarity=-0.001 Sum_probs=151.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcc-cHHHHHHHHhccC-ChhhHHHHHHHHHHhccCCCceehhhHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHF-VCPKVYKACSELK-DYRVGKDVYDYMISIKFEGNACVKRPLLDL 109 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 109 (354)
.++.+-....+.+..++|+++++.+... .|+.. .|+.--..+...+ +++++.++++.+.+.. +.+..+|+.-..+
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wl 132 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 4555555555666778999999999986 44444 4666666666677 5999999999999875 6677788887777
Q ss_pred HHhc-C-ChhHHHHHHHhh----ccccchhhHHHHHHHhcCchh--------HHHHHhccCCC---CChhhhHHHHHHHH
Q 038758 110 FIKC-G-RMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLK--------VSHCKFSKIKQ---KDLVSWNAMLAGYA 172 (354)
Q Consensus 110 ~~~~-g-~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~~~~---~~~~~~~~li~~~~ 172 (354)
+.+. + +++++.++++++ +.+-.+|+.-...+.+.|.++ ++.+.++++.+ .|...|+.....+.
T Consensus 133 L~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 7776 7 889999999998 455667776666666666666 88888877764 35667777777777
Q ss_pred hCCC-------hhHHHHHHHHHHhhhcCCCCC-cchHHHHHHHhhhhcCccccchhhhHhhhhccccccc-cchhHHHHH
Q 038758 173 LGGF-------REEVTNLLDEMEMIQTDMQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA-CGFVICSCS 243 (354)
Q Consensus 173 ~~~~-------~~~a~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~a~~ 243 (354)
+.++ ++++++.+++.. . ..|+ ...|+-+-..+.+.|.... -.+...-...+...+.. ..-.+.+.+
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI--~--~~P~n~SaW~Ylr~Ll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSI--H--LIPHNVSAWNYLRGFLKHFSLPLV-PILPAILPYTASKLNPDIETVEAFGFP 287 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHH--H--HCTTCHHHHHHHHHHHHHTTCCSG-GGHHHHGGGTC--------------CC
T ss_pred hccccccchHHHHHHHHHHHHHH--H--hCCCCHHHHHHHHHHHHhcCCCcc-cccccccccccccccccchhHHHHHHH
Confidence 7765 577888887775 2 3444 4455554444444443200 00000000000000000 000000111
Q ss_pred Hhcc-----cCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038758 244 VFNQ-----LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIV 281 (354)
Q Consensus 244 ~~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 281 (354)
+.+. ...+.......+...|...|+.++|.++++.+.+
T Consensus 288 ~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 288 MPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 1111 0135667788889999999999999999999864
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.98 E-value=5.2e-05 Score=57.02 Aligned_cols=93 Identities=8% Similarity=-0.046 Sum_probs=62.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|..+-..+.+.|++++|.+.|++..+.. +-+...|..+...+...|++++|...++...+.. +.+...|..+..+|.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 45556666777777777777777776653 2245556666677777777777777777777654 444566666777777
Q ss_pred hcCChhHHHHHHHhh
Q 038758 112 KCGRMEITSGLFEEM 126 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~ 126 (354)
..|++++|...|++.
T Consensus 91 ~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 91 DMADYKGAKEAYEKG 105 (164)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHH
Confidence 777777777666654
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.96 E-value=3.1e-05 Score=53.54 Aligned_cols=96 Identities=9% Similarity=-0.012 Sum_probs=60.3
Q ss_pred cccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcC
Q 038758 65 HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCR 144 (354)
Q Consensus 65 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~ 144 (354)
...+..+...+...|++++|...++...+.. +.+...+..+..++...|++++|...|++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a------------------ 66 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYV------------------ 66 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHH------------------
Confidence 3445556666667777777777777666553 334455566666666666666666655543
Q ss_pred chhHHHHHhccCCCC--ChhhhHHHHHHHHhC-CChhHHHHHHHHHH
Q 038758 145 YLKVSHCKFSKIKQK--DLVSWNAMLAGYALG-GFREEVTNLLDEME 188 (354)
Q Consensus 145 ~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~-~~~~~a~~~~~~m~ 188 (354)
. +.... +...+..+...+.+. |++++|.+.++...
T Consensus 67 -----~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 67 -----I----NVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp -----H----HTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred -----H----HhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 0 00112 456677777778888 88888888888775
No 159
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.95 E-value=4.2e-05 Score=54.36 Aligned_cols=91 Identities=8% Similarity=-0.109 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhc
Q 038758 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKC 113 (354)
Q Consensus 34 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 113 (354)
..+-..+.+.|++++|...|++..+.. +-+...|..+...+...|++++|...|+...+.. +.+...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 344455666777777777777776643 2244556666666667777777777777766654 33455666666677777
Q ss_pred CChhHHHHHHHhh
Q 038758 114 GRMEITSGLFEEM 126 (354)
Q Consensus 114 g~~~~a~~~~~~~ 126 (354)
|++++|...|++.
T Consensus 99 g~~~~A~~~~~~a 111 (121)
T 1hxi_A 99 HNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 7777777666654
No 160
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.94 E-value=2.4e-05 Score=58.12 Aligned_cols=139 Identities=13% Similarity=0.047 Sum_probs=94.4
Q ss_pred cHHHHHHHHhccCChhhHHHHHHHHHHhccC-CC----ceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHH
Q 038758 67 VCPKVYKACSELKDYRVGKDVYDYMISIKFE-GN----ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYA 141 (354)
Q Consensus 67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~ 141 (354)
++..+...+...|++++|.+.++...+..-. ++ ..++..+...+...|++++|.+.+++
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---------------- 74 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKK---------------- 74 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH----------------
Confidence 4666667777888888888888887754211 11 13566677777777777777776655
Q ss_pred hcCchhHHHHHhccCCCC--ChhhhHHHHHHHHhCCChhHHHHHHHHHHhh--hcCCCC-CcchHHHHHHHhhhhcCccc
Q 038758 142 KCRYLKVSHCKFSKIKQK--DLVSWNAMLAGYALGGFREEVTNLLDEMEMI--QTDMQP-NTISLSGVLAACAQVKGVKL 216 (354)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~p-~~~t~~~ll~~~~~~~~~~~ 216 (354)
|.+++.....+ ....+..+...+...|++++|.+.+++.... ..+..+ ....+..+...+...|+.++
T Consensus 75 -------a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 147 (164)
T 3ro3_A 75 -------TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 147 (164)
T ss_dssp -------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred -------HHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHH
Confidence 23333333221 1345777888889999999999999877521 112222 24678888889999999999
Q ss_pred cchhhhHhhhhc
Q 038758 217 GKAIHGYVLRHH 228 (354)
Q Consensus 217 a~~~~~~~~~~~ 228 (354)
|...++...+..
T Consensus 148 A~~~~~~a~~~~ 159 (164)
T 3ro3_A 148 AMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998887653
No 161
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.94 E-value=3.1e-05 Score=56.78 Aligned_cols=94 Identities=5% Similarity=-0.175 Sum_probs=60.7
Q ss_pred cHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCch
Q 038758 67 VCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYL 146 (354)
Q Consensus 67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~ 146 (354)
.+..+...+.+.|++++|...|+...+.. +.+...|..+..+|...|++++|...|++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-------------------- 78 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYG-------------------- 78 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHH--------------------
Confidence 34455556677777888887777777654 445666777777777777777777766653
Q ss_pred hHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 147 KVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
.+ +...+...+..+..++...|++++|.+.|+...
T Consensus 79 ---l~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 79 ---AL----MDINEPRFPFHAAECHLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp ---HH----HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---Hh----cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00 011244556666667777777777777777665
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.93 E-value=4.5e-05 Score=55.18 Aligned_cols=98 Identities=9% Similarity=-0.115 Sum_probs=67.9
Q ss_pred CCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHh
Q 038758 63 PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAK 142 (354)
Q Consensus 63 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~ 142 (354)
.+...+..+...+...|+++.|...|+...+.. +.+...+..+..++...|++++|...+++.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a---------------- 69 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRA---------------- 69 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----------------
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHH----------------
Confidence 345566777777778888888888888777664 445666777777777777777777666653
Q ss_pred cCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 143 CRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
.++ ...+...|..+...+...|++++|...|+...
T Consensus 70 -------l~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 70 -------LEL----DGQSVKAHFFLGQCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp -------HHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------HHh----CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 110 11245667777888888888888888888776
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.93 E-value=3.5e-05 Score=55.30 Aligned_cols=62 Identities=6% Similarity=-0.046 Sum_probs=34.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHh
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI 94 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 94 (354)
++..+-..+.+.|++++|++.|++..+.. +-+...|..+..++...|++++|.+.++...+.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~ 71 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV 71 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 45555555666666666666666655542 223334555555555666666666655555543
No 164
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.91 E-value=0.0001 Score=52.53 Aligned_cols=97 Identities=13% Similarity=-0.001 Sum_probs=71.3
Q ss_pred hhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHH
Q 038758 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICS 241 (354)
Q Consensus 162 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a 241 (354)
..|..+...+.+.|++++|.+.|++.. .. -+.+...|..+..++.+.|++++|...++...+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al--~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------------- 68 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMI--KR-APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD------------- 68 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH--HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH--Hh-CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------------
Confidence 345666677778888888888887775 22 12245667777777778888888887777776654
Q ss_pred HHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038758 242 CSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282 (354)
Q Consensus 242 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (354)
+.+...|..+...+...|++++|...|++..+.
T Consensus 69 --------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 69 --------PNFVRAYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 345677888888999999999999999988754
No 165
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.90 E-value=2.3e-05 Score=61.10 Aligned_cols=125 Identities=8% Similarity=-0.076 Sum_probs=81.8
Q ss_pred HHHHHHHhcCchhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcC-CCCC-------------
Q 038758 135 SLIDFYAKCRYLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD-MQPN------------- 197 (354)
Q Consensus 135 ~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~p~------------- 197 (354)
..+......|+++++.+.++.-.. .....+..+...+.+.|++++|.+.|++.. ... -.|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~~~~ 86 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEAL--DFFIHTEEWDDQILLDKKKNI 86 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HTTTTCTTCCCHHHHHHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHhcccccchhhHHHHHHHH
Confidence 344444555566666666654332 134456777788888999999999998886 311 1111
Q ss_pred -cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 038758 198 -TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLL 276 (354)
Q Consensus 198 -~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 276 (354)
...+..+..++.+.|++++|...++...+.. +.+...|..+..+|...|++++|...|
T Consensus 87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------------------p~~~~~~~~lg~~~~~~~~~~~A~~~~ 145 (198)
T 2fbn_A 87 EISCNLNLATCYNKNKDYPKAIDHASKVLKID---------------------KNNVKALYKLGVANMYFGFLEEAKENL 145 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------------------TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---------------------cccHHHHHHHHHHHHHcccHHHHHHHH
Confidence 1567777777888888888888888777664 346678888889999999999999999
Q ss_pred HHHHHc
Q 038758 277 RDVIVA 282 (354)
Q Consensus 277 ~~m~~~ 282 (354)
++..+.
T Consensus 146 ~~al~~ 151 (198)
T 2fbn_A 146 YKAASL 151 (198)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998865
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=0.00013 Score=53.38 Aligned_cols=92 Identities=11% Similarity=0.042 Sum_probs=73.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCC----cccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPD----HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL 107 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 107 (354)
.|..+...+...|++++|.+.|++..+. .|+ ...+..+...+...|++++|.+.++...+.. +.+...+..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHH
Confidence 5677778888899999999999988875 455 5667777788888899999999998888764 44566777888
Q ss_pred HHHHhcCChhHHHHHHHhh
Q 038758 108 DLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~~ 126 (354)
.++...|++++|...|++.
T Consensus 107 ~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 8888888888888888775
No 167
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.89 E-value=9.8e-05 Score=52.91 Aligned_cols=96 Identities=13% Similarity=0.102 Sum_probs=78.8
Q ss_pred cHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh---ccc--------cchhhH
Q 038758 67 VCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM---DQD--------FLVNNS 135 (354)
Q Consensus 67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~--------~~~~~~ 135 (354)
.+..+...+.+.|++++|.+.|+...+.. +.+...|..+..+|.+.|++++|.+.|++. .|+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 46678888999999999999999999875 556788999999999999999999999987 222 235667
Q ss_pred HHHHHHhcCchhHHHHHhccCCC--CChhh
Q 038758 136 LIDFYAKCRYLKVSHCKFSKIKQ--KDLVS 163 (354)
Q Consensus 136 li~~~~~~~~~~~a~~~~~~~~~--~~~~~ 163 (354)
+..++...|++++|.+.|++... ||...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~~~~ 118 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRDPEL 118 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCHHH
Confidence 78888999999999999987643 55443
No 168
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.88 E-value=0.00017 Score=50.20 Aligned_cols=98 Identities=9% Similarity=-0.102 Sum_probs=72.8
Q ss_pred hhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHH
Q 038758 161 LVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVIC 240 (354)
Q Consensus 161 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 240 (354)
...+..+...+...|++++|.+.|+... .. .+.+...+..+...+...|++++|...++...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------ 68 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAI--KL-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK------------ 68 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH--HH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHH--HH-CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC------------
Confidence 3456667777888888888888888876 32 12245566667777778888888888877776654
Q ss_pred HHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038758 241 SCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA 282 (354)
Q Consensus 241 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (354)
+.+...+..+...+...|++++|.+.+++..+.
T Consensus 69 ---------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 69 ---------PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp ---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ---------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 235667888888999999999999999998854
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.88 E-value=7.2e-05 Score=53.28 Aligned_cols=111 Identities=7% Similarity=0.037 Sum_probs=75.9
Q ss_pred hhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHH
Q 038758 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICS 241 (354)
Q Consensus 162 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a 241 (354)
..|..+...+...|++++|...|+... ... +.+...+..+...+...|++++|...+....+.....
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~--~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------- 71 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAK--ELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN---------- 71 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH--HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH--hcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc----------
Confidence 345666677777788888888887775 321 2345556666677777777777777777766654310
Q ss_pred HHHhcccCCCC----cchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHH
Q 038758 242 CSVFNQLSTRD----VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295 (354)
Q Consensus 242 ~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 295 (354)
.++ ..+|..+...+.+.|++++|.+.|++..+. .|+......+-
T Consensus 72 --------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~ 119 (131)
T 1elr_A 72 --------REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQ 119 (131)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred --------chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 112 556778888999999999999999999875 45655444333
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.84 E-value=5.6e-05 Score=53.67 Aligned_cols=88 Identities=7% Similarity=-0.078 Sum_probs=55.0
Q ss_pred cHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHh
Q 038758 67 VCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAK 142 (354)
Q Consensus 67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~ 142 (354)
.+..+...+.+.|++++|...|+...+.. +.+...|..+..++...|++++|...|++. +.+...+..+..+|.+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45555666777888888888888877764 446667777777788888888887777764 2223333444444444
Q ss_pred cCchhHHHHHhcc
Q 038758 143 CRYLKVSHCKFSK 155 (354)
Q Consensus 143 ~~~~~~a~~~~~~ 155 (354)
.|++++|...|++
T Consensus 98 ~g~~~~A~~~~~~ 110 (121)
T 1hxi_A 98 EHNANAALASLRA 110 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 4444444444443
No 171
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.83 E-value=4.9e-05 Score=57.12 Aligned_cols=96 Identities=14% Similarity=0.020 Sum_probs=65.8
Q ss_pred cccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcC
Q 038758 65 HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCR 144 (354)
Q Consensus 65 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~ 144 (354)
...+..+...+...|++++|.+.|+...+.. +.+...|..+..+|.+.|++++|...|++.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------------------ 71 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELA------------------ 71 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHH------------------
Confidence 3456666677778888888888888877664 445666777777777777777777766653
Q ss_pred chhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 145 YLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
.++ ...+...|..+..++.+.|++++|.+.|++..
T Consensus 72 -----l~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 72 -----TVV----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp -----HHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----HHh----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 110 11245667777777778888888888887776
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.83 E-value=0.00039 Score=50.64 Aligned_cols=103 Identities=9% Similarity=0.015 Sum_probs=82.2
Q ss_pred ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC----cchHHHHHHHhhhhcCccccchhhhHhhhhcccccccc
Q 038758 160 DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN----TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTAC 235 (354)
Q Consensus 160 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 235 (354)
+...+..+...+.+.|++++|.+.|++.. . ..|+ ...+..+..++...|++++|...++...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~--~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------- 95 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQAL--G--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD------- 95 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHH--T--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH--H--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-------
Confidence 55667788888999999999999999887 3 3455 5667777788888999999988888877664
Q ss_pred chhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHh
Q 038758 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289 (354)
Q Consensus 236 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 289 (354)
+.+...|..+...+...|++++|...|++..+. .|+..
T Consensus 96 --------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~ 133 (148)
T 2dba_A 96 --------------GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL--EPKNK 133 (148)
T ss_dssp --------------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSSCH
T ss_pred --------------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcH
Confidence 345677888889999999999999999999865 45543
No 173
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.83 E-value=2.2e-05 Score=55.35 Aligned_cols=84 Identities=17% Similarity=0.150 Sum_probs=62.9
Q ss_pred hcCChhHHHHHHHHHHhCC--CcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHH
Q 038758 42 VLGYYEEIVNLFYLMIDKG--VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEIT 119 (354)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 119 (354)
..|++++|...|++..+.+ -+-+...+..+...+...|++++|.+.|+...+.. +-+...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 4588889999999888764 12344567778888888999999999999888775 55677788888888889999999
Q ss_pred HHHHHhh
Q 038758 120 SGLFEEM 126 (354)
Q Consensus 120 ~~~~~~~ 126 (354)
...|++.
T Consensus 81 ~~~~~~a 87 (117)
T 3k9i_A 81 VELLLKI 87 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888875
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.81 E-value=0.00019 Score=51.14 Aligned_cols=89 Identities=10% Similarity=0.041 Sum_probs=66.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCcCCc----ccHHHHHHHHhccCChhhHHHHHHHHHHhccCCC---ceehhhHH
Q 038758 35 SMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH----FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN---ACVKRPLL 107 (354)
Q Consensus 35 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li 107 (354)
.+-..+...|++++|...|++..+.. |+. ..+..+...+...|++++|...|+...+.. +.+ ...+..+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 34556778889999999998887753 333 366677778888889999998888888764 223 45567777
Q ss_pred HHHHhcCChhHHHHHHHhh
Q 038758 108 DLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~~ 126 (354)
.++...|++++|...|++.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 7888888888888887765
No 175
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.81 E-value=0.00014 Score=64.75 Aligned_cols=115 Identities=12% Similarity=0.039 Sum_probs=73.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCc----------------ccHHHHHHHHhccCChhhHHHHHHHHHHhc
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH----------------FVCPKVYKACSELKDYRVGKDVYDYMISIK 95 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 95 (354)
.|+.+-..+.+.|++++|...|++..+. .|+. ..|..+..++.+.|++++|...++...+..
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 6778888888999999999999998874 3332 556666666677777777777777776654
Q ss_pred cCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHH
Q 038758 96 FEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVS 149 (354)
Q Consensus 96 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a 149 (354)
+.+...|..+..+|...|++++|...|++. +.+...+..+..++.+.++.+++
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666667776666666654 22333444444444444444433
No 176
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.72 E-value=8.7e-05 Score=66.26 Aligned_cols=129 Identities=11% Similarity=0.008 Sum_probs=83.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC---CcC----CcccHHHHHHHHhccCChhhHHHHHHHHHHh---ccCC----Ccee
Q 038758 37 MGMYNVLGYYEEIVNLFYLMIDKG---VRP----DHFVCPKVYKACSELKDYRVGKDVYDYMISI---KFEG----NACV 102 (354)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~~~---~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~----~~~~ 102 (354)
+..+...|++++|..++++..+.. +-| ...+++.|..+|...|++++|..++++..+. -+.| ...+
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 344566778888877777765431 122 2335677777777778888777777776543 1122 2345
Q ss_pred hhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCCCh----hhhHHHHHHHHhCCChh
Q 038758 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDL----VSWNAMLAGYALGGFRE 178 (354)
Q Consensus 103 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~li~~~~~~~~~~ 178 (354)
++.|...|...|++++|+.++++ |.++++....||. .+.+.+-.++...+.++
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~-----------------------Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~ 452 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICK-----------------------AYAILLVTHGPSHPITKDLEAMRMQTEMELRMFR 452 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------------------HHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH-----------------------HHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777776554 5555555544332 24566667778888899
Q ss_pred HHHHHHHHHH
Q 038758 179 EVTNLLDEME 188 (354)
Q Consensus 179 ~a~~~~~~m~ 188 (354)
+|+.+|..++
T Consensus 453 ~ae~~~~~~~ 462 (490)
T 3n71_A 453 QNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999987
No 177
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.71 E-value=0.0041 Score=52.58 Aligned_cols=168 Identities=11% Similarity=-0.014 Sum_probs=97.8
Q ss_pred hhHHHHHhccCCC---CChhhhHHHHHHHHhC-C-ChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCcc-----
Q 038758 146 LKVSHCKFSKIKQ---KDLVSWNAMLAGYALG-G-FREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK----- 215 (354)
Q Consensus 146 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~-~-~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~----- 215 (354)
++++++.++.+.. .+...|+.--..+.+. + ++++++++++.+. . .-+-|...|+.-.-.+.+.+..+
T Consensus 105 l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L--~-~dpkNy~AW~~R~wvl~~l~~~~~~~~~ 181 (349)
T 3q7a_A 105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSL--L-PDPKNYHTWAYLHWLYSHFSTLGRISEA 181 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHT--S-SCTTCHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHH--H-hCCCCHHHHHHHHHHHHHhccccccchh
Confidence 4444444444332 2334455444444443 4 6777777777775 2 22234445554444444444444
Q ss_pred ---ccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCcC
Q 038758 216 ---LGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQ-------VVDALDLLRDVIVANVK 285 (354)
Q Consensus 216 ---~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~g~~ 285 (354)
++.+..+.+.+.. ..|...|+.....+.+.++ ++++++.+++.... .
T Consensus 182 ~~~eELe~~~k~I~~d---------------------p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~ 238 (349)
T 3q7a_A 182 QWGSELDWCNEMLRVD---------------------GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--I 238 (349)
T ss_dssp HHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--C
T ss_pred hHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--C
Confidence 4444444444433 4577778777777777665 67888888887754 4
Q ss_pred CCH-hhHHHHHHHhhccCcc------------------cCc------------------cccchhHHHHHHHHHHhcCCh
Q 038758 286 PNT-VTIVSVLPACLKLAAL------------------PQG------------------LGTGSFVWNALIDMYGRCGAI 328 (354)
Q Consensus 286 p~~-~t~~~li~~~~~~~~~------------------~~~------------------~~~~~~~~~~li~~~~~~g~~ 328 (354)
|+. ..|+.+-..+.+.|.. ... -.++......|.+.|...|+.
T Consensus 239 P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~ 318 (349)
T 3q7a_A 239 PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRV 318 (349)
T ss_dssp TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCH
T ss_pred CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCH
Confidence 544 3444433333333322 000 136778889999999999999
Q ss_pred hHHHHHhhcCC
Q 038758 329 QKSRKIFVLMP 339 (354)
Q Consensus 329 ~~A~~~~~~m~ 339 (354)
++|.++++.+.
T Consensus 319 ~~a~~~~~~l~ 329 (349)
T 3q7a_A 319 DDAAKVFEKLS 329 (349)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 178
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.69 E-value=0.0059 Score=54.70 Aligned_cols=290 Identities=13% Similarity=0.065 Sum_probs=147.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccC-ChhhHHHHHHHHHHh-ccC-CCceehhhHHHH
Q 038758 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK-DYRVGKDVYDYMISI-KFE-GNACVKRPLLDL 109 (354)
Q Consensus 33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~-~~~-~~~~~~~~li~~ 109 (354)
|...+..+-. |+++.+..+|++.... .|+...|...+....+.+ ..+...++|+..+.. |.. .+...|...+..
T Consensus 18 yer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f 94 (493)
T 2uy1_A 18 MEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEE 94 (493)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Confidence 3333333333 6777788888777764 467777777776665555 245566777766654 322 244455555544
Q ss_pred HH----hcCChhHHHHHHHhhc--cc---------------------------------------------------cch
Q 038758 110 FI----KCGRMEITSGLFEEMD--QD---------------------------------------------------FLV 132 (354)
Q Consensus 110 ~~----~~g~~~~a~~~~~~~~--~~---------------------------------------------------~~~ 132 (354)
+. ..|+++.+.++|++.- |. ...
T Consensus 95 ~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~ 174 (493)
T 2uy1_A 95 EGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKN 174 (493)
T ss_dssp TSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHH
T ss_pred HHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHH
Confidence 33 2356666777776651 00 001
Q ss_pred hhHHHHHHHhc--Cc-----hhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHH
Q 038758 133 NNSLIDFYAKC--RY-----LKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLS 202 (354)
Q Consensus 133 ~~~li~~~~~~--~~-----~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~ 202 (354)
|...+..-... |- .+.+..+|++... .+...|-..+.-+.+.|+.+.|.++|+... .. |....+.
T Consensus 175 W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi--~~---P~~~~l~ 249 (493)
T 2uy1_A 175 AARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGI--EM---SDGMFLS 249 (493)
T ss_dssp HHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HH---CCSSHHH
T ss_pred HHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hC---CCcHHHH
Confidence 11111111110 00 1233445554432 234456556666677888888888888887 44 5544332
Q ss_pred HHHHHhhhhcCccccchhhhHhhhhcc-------------cccc----------ccchhHHHHHHhcccCCCCcchHHHH
Q 038758 203 GVLAACAQVKGVKLGKAIHGYVLRHHI-------------HLST----------ACGFVICSCSVFNQLSTRDVVVWNSI 259 (354)
Q Consensus 203 ~ll~~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~----------~~~~~~~a~~~~~~~~~~~~~~~~~l 259 (354)
. .++.....+ ++++.+.+.-. .+.. +.+..+.|..+|++...|. .++...
T Consensus 250 ~---~y~~~~e~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~-~~~~v~ 322 (493)
T 2uy1_A 250 L---YYGLVMDEE---AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEG-VGPHVF 322 (493)
T ss_dssp H---HHHHHTTCT---HHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSC-CCHHHH
T ss_pred H---HHHhhcchh---HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCC-CChHHH
Confidence 2 222221111 11222222100 0000 3556777777877764333 233222
Q ss_pred HH---HHHh-cCCHHHHHHHHHHHHHcCcCCC-HhhHHHHHHHhhccCcccCc------cccchhHHHHHHHHHHhcCCh
Q 038758 260 IS---AFVR-SGQVVDALDLLRDVIVANVKPN-TVTIVSVLPACLKLAALPQG------LGTGSFVWNALIDMYGRCGAI 328 (354)
Q Consensus 260 i~---~~~~-~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~ 328 (354)
+. .-.. .++.+.|..+|+...+.- |+ ...+...+.-..+.|+.+.+ .......|...++.-...|+.
T Consensus 323 i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k~~~lw~~~~~fE~~~G~~ 400 (493)
T 2uy1_A 323 IYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLEKTSRMWDSMIEYEFMVGSM 400 (493)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCCBHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 21 1111 235788888888776542 33 22333444444555655544 233566777777777777888
Q ss_pred hHHHHHhhcCC
Q 038758 329 QKSRKIFVLMP 339 (354)
Q Consensus 329 ~~A~~~~~~m~ 339 (354)
+.+.+++++..
T Consensus 401 ~~~r~v~~~~~ 411 (493)
T 2uy1_A 401 ELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 87777776654
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.67 E-value=3e-05 Score=69.42 Aligned_cols=113 Identities=9% Similarity=-0.049 Sum_probs=86.5
Q ss_pred HHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchh
Q 038758 72 YKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLK 147 (354)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~ 147 (354)
...+.+.|++++|.+.+++..+.. +.+...+..+..+|.+.|++++|.+.+++. +.+...|..+..+|.+.|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 345667899999999999998874 556788999999999999999999999987 445677888888999999999
Q ss_pred HHHHHhccCCC--C-ChhhhHHHHHH--HHhCCChhHHHHHHH
Q 038758 148 VSHCKFSKIKQ--K-DLVSWNAMLAG--YALGGFREEVTNLLD 185 (354)
Q Consensus 148 ~a~~~~~~~~~--~-~~~~~~~li~~--~~~~~~~~~a~~~~~ 185 (354)
+|.+.|++..+ | +...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999887653 3 34455555555 778889999998887
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.65 E-value=0.00065 Score=48.24 Aligned_cols=98 Identities=12% Similarity=0.050 Sum_probs=70.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCc----chHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHH
Q 038758 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT----ISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVIC 240 (354)
Q Consensus 165 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 240 (354)
..+...+.+.|++++|.+.|+... .. .|+. ..+..+..++.+.|++++|...++...+...
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~--~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p----------- 70 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFL--EL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP----------- 70 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH--HH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH--HH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-----------
Confidence 345566777888888888888876 32 2332 3566666777788888888888877776542
Q ss_pred HHHHhcccCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHh
Q 038758 241 SCSVFNQLSTRD---VVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289 (354)
Q Consensus 241 a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 289 (354)
.+ ...+..+...+.+.|++++|...|++..+. .|+..
T Consensus 71 ----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~ 110 (129)
T 2xev_A 71 ----------THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ--YPGSD 110 (129)
T ss_dssp ----------TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTSH
T ss_pred ----------CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCh
Confidence 12 345677788899999999999999999865 35544
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.63 E-value=0.00019 Score=61.82 Aligned_cols=119 Identities=8% Similarity=0.003 Sum_probs=81.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC--------------C-cCCcccHHHHHHHHhccCChhhHHHHHHHHHHhcc
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKG--------------V-RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKF 96 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~--------------~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 96 (354)
.|..+-..+.+.|++++|...|++..+.- . +.+...|..+...+.+.|++++|.+.++...+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 67888888999999999999999887610 1 1234456677777778888888888888877654
Q ss_pred CCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHH
Q 038758 97 EGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHC 151 (354)
Q Consensus 97 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~ 151 (354)
+.+...+..+..+|...|++++|.+.|++. +.+...+..+...+.+.++.+++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777788888888887777765 2234444555555555555555543
No 182
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.60 E-value=5.7e-05 Score=52.27 Aligned_cols=58 Identities=16% Similarity=0.090 Sum_probs=25.6
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758 68 CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
+..+...+...|++++|.+.|+...+.. +.+...+..+..++.+.|++++|.+.|++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 64 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3333444444444444444444444332 223334444444444444444444444443
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.59 E-value=2.4e-05 Score=55.16 Aligned_cols=85 Identities=13% Similarity=-0.097 Sum_probs=50.0
Q ss_pred ccCChhhHHHHHHHHHHhc--cCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhc
Q 038758 77 ELKDYRVGKDVYDYMISIK--FEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFS 154 (354)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 154 (354)
..|++++|...|+...+.+ -+.+...+..+..+|...|++++|...|++. .+.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a-----------------------l~~-- 56 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANG-----------------------VKQ-- 56 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------------HHH--
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------------------HHh--
Confidence 3577888888888887753 2334556777777777777777777776664 000
Q ss_pred cCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 155 KIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 155 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
...+...+..+..++.+.|++++|.+.|++..
T Consensus 57 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 57 --FPNHQALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred --CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 01234455556666666666666666666654
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.57 E-value=0.00017 Score=61.36 Aligned_cols=138 Identities=11% Similarity=-0.013 Sum_probs=68.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|..+-..+.+.|++++|...|++.... .|+... +...++.+.+...+ . ...|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHHHH
Confidence 5666777777888888888888887654 233221 11222222222111 0 125667777777
Q ss_pred hcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCC--C-ChhhhHHHHHH-HHhCCChhHHHHH
Q 038758 112 KCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--K-DLVSWNAMLAG-YALGGFREEVTNL 183 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~-~~~~~~~~~a~~~ 183 (354)
+.|++++|...+++. +.+...|..+..+|...|++++|...|++..+ | +...+..+... ....+..+.+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777887777777766 33556677777778888888888888877764 3 23344444433 2344566777778
Q ss_pred HHHHH
Q 038758 184 LDEME 188 (354)
Q Consensus 184 ~~~m~ 188 (354)
|..|.
T Consensus 322 ~~~~l 326 (338)
T 2if4_A 322 YKGIF 326 (338)
T ss_dssp -----
T ss_pred HHHhh
Confidence 87775
No 185
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.56 E-value=6e-05 Score=67.27 Aligned_cols=131 Identities=7% Similarity=-0.085 Sum_probs=89.6
Q ss_pred HhccCChhhHHHHHHHHHHhc---cCC----CceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchh
Q 038758 75 CSELKDYRVGKDVYDYMISIK---FEG----NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147 (354)
Q Consensus 75 ~~~~~~~~~a~~~~~~m~~~~---~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~ 147 (354)
+...|++++|..++++..+.. +.| ...+++.|..+|...|++++|+.++++
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~---------------------- 376 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARR---------------------- 376 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----------------------
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH----------------------
Confidence 446777888877777766431 122 234677777777777777777776554
Q ss_pred HHHHHhccCCCC---C-hhhhHHHHHHHHhCCChhHHHHHHHHHHhh---hcCC-CCC-cchHHHHHHHhhhhcCccccc
Q 038758 148 VSHCKFSKIKQK---D-LVSWNAMLAGYALGGFREEVTNLLDEMEMI---QTDM-QPN-TISLSGVLAACAQVKGVKLGK 218 (354)
Q Consensus 148 ~a~~~~~~~~~~---~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~-~p~-~~t~~~ll~~~~~~~~~~~a~ 218 (354)
|+.++++...+ + ..+++.|...|...|++++|..++++.... ..|- .|+ ..+.+.+-.++...+..++|+
T Consensus 377 -aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae 455 (490)
T 3n71_A 377 -MVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE 455 (490)
T ss_dssp -HHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433 2 356889999999999999999998876410 1121 233 455677777888999999999
Q ss_pred hhhhHhhhhc
Q 038758 219 AIHGYVLRHH 228 (354)
Q Consensus 219 ~~~~~~~~~~ 228 (354)
.++..+.+.-
T Consensus 456 ~~~~~~~~~~ 465 (490)
T 3n71_A 456 FMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.51 E-value=0.00045 Score=51.58 Aligned_cols=94 Identities=9% Similarity=0.036 Sum_probs=72.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC--------C---------CcCCcccHHHHHHHHhccCChhhHHHHHHHHHHh
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK--------G---------VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI 94 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~--------~---------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 94 (354)
.+...-..+.+.|++++|...|.+.... . -+.+...|..+..++.+.|+++.|...++...+.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 5666777888999999999999998764 0 0112345777777888888888888888888876
Q ss_pred ccCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758 95 KFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 95 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
. +.+...|..+..+|...|++++|...|++.
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 5 556777888888888888888888888775
No 187
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.48 E-value=0.00032 Score=62.38 Aligned_cols=132 Identities=10% Similarity=-0.076 Sum_probs=70.2
Q ss_pred ccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh-ccccchhhHHHHHHHhcC
Q 038758 66 FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCR 144 (354)
Q Consensus 66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~li~~~~~~~ 144 (354)
..|..+...+.+.|+++.|...|+...+.. |+...+. .+.. .+. ......|..+..+|.+.|
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~-----------~~~~----~~~~~~~~~~~~nla~~~~~~g 331 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLS-----------EKES----KASESFLLAAFLNLAMCYLKLR 331 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCC-----------HHHH----HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCC-----------hHHH----HHHHHHHHHHHHHHHHHHHHhc
Confidence 356667777888888999998888888753 2221000 0000 000 011233444444445555
Q ss_pred chhHHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCC-CcchHHHHHHHhhhhcCccccc
Q 038758 145 YLKVSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP-NTISLSGVLAACAQVKGVKLGK 218 (354)
Q Consensus 145 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~ 218 (354)
++++|+..|++..+ .+...|..+..+|.+.|++++|...|+... . +.| +...+..+..++.+.++.+++.
T Consensus 332 ~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al--~--l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL--E--VNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--T--TC----CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHH--H--hCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555444432 245556666677777777777777777665 2 233 2345555555666666555443
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.40 E-value=0.00095 Score=49.78 Aligned_cols=105 Identities=8% Similarity=-0.009 Sum_probs=77.5
Q ss_pred hhhHHHHHHHHhCCChhHHHHHHHHHHhhhcC-----C---------CC-CcchHHHHHHHhhhhcCccccchhhhHhhh
Q 038758 162 VSWNAMLAGYALGGFREEVTNLLDEMEMIQTD-----M---------QP-NTISLSGVLAACAQVKGVKLGKAIHGYVLR 226 (354)
Q Consensus 162 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----~---------~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 226 (354)
..+......+.+.|++++|...|+........ - .| +...|..+..++.+.|+++.|...+...++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 45666777788888888888888877521000 0 12 235677777888888999888888888777
Q ss_pred hccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHh
Q 038758 227 HHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289 (354)
Q Consensus 227 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 289 (354)
.. +.+...|..+..+|...|++++|...|++..+. .|+..
T Consensus 92 ~~---------------------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 92 RE---------------------ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp HS---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred cC---------------------CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 64 346778888899999999999999999998865 46544
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.37 E-value=0.0004 Score=59.10 Aligned_cols=144 Identities=8% Similarity=-0.017 Sum_probs=78.9
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchh
Q 038758 68 CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147 (354)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~ 147 (354)
+..+...+.+.|+++.|...|+...+. .|+.. .+...|+.+++...+. ...|..+..+|.+.|+++
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~-------~~~~~~~~~~~~~~l~-----~~~~~nla~~~~~~g~~~ 247 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDF-------MFQLYGKYQDMALAVK-----NPCHLNIAACLIKLKRYD 247 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHH-------HHTCCHHHHHHHHHHH-----THHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--hccch-------hhhhcccHHHHHHHHH-----HHHHHHHHHHHHHcCCHH
Confidence 555666777888888888888887754 23221 1223344444433222 247888999999999999
Q ss_pred HHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCc-chHHHHHHH-hhhhcCccccchhhh
Q 038758 148 VSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT-ISLSGVLAA-CAQVKGVKLGKAIHG 222 (354)
Q Consensus 148 ~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~-~t~~~ll~~-~~~~~~~~~a~~~~~ 222 (354)
+|...+++..+ .+...|..+..+|...|++++|.+.|+... .+.|+. ..+..+... ....+..+.+..+|.
T Consensus 248 ~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al----~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 248 EAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ----KYAPDDKAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT----C-------------------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988753 356788899999999999999999999886 234543 334444333 234566778888888
Q ss_pred Hhhhhcc
Q 038758 223 YVLRHHI 229 (354)
Q Consensus 223 ~~~~~~~ 229 (354)
.+.....
T Consensus 324 ~~l~~~p 330 (338)
T 2if4_A 324 GIFKGKD 330 (338)
T ss_dssp -------
T ss_pred HhhCCCC
Confidence 8876544
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.00016 Score=49.88 Aligned_cols=91 Identities=13% Similarity=0.064 Sum_probs=67.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCC-------ceehh
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN-------ACVKR 104 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-------~~~~~ 104 (354)
.|..+-..+.+.|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.++...+. .|+ ...+.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHHHH
Confidence 46677788899999999999999998864 335667888888999999999999999999875 343 33444
Q ss_pred hHHHHHHhcCChhHHHHHHHh
Q 038758 105 PLLDLFIKCGRMEITSGLFEE 125 (354)
Q Consensus 105 ~li~~~~~~g~~~~a~~~~~~ 125 (354)
.+..++...|+.+.|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 455555555555555444433
No 191
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.35 E-value=0.057 Score=48.33 Aligned_cols=171 Identities=12% Similarity=-0.077 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHH-HHHhccC---C
Q 038758 82 RVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVS-HCKFSKI---K 157 (354)
Q Consensus 82 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a-~~~~~~~---~ 157 (354)
+.+..+|+.+.... +.+...|-..+..+...|+++.|..++++.-..+... .+--.|+.....++. ..+.+.. .
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~-~l~~~y~~~~e~~~~~~~l~~~~~~~~ 273 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGM-FLSLYYGLVMDEEAVYGDLKRKYSMGE 273 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSS-HHHHHHHHHTTCTHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcH-HHHHHHHhhcchhHHHHHHHHHHHhhc
Confidence 34567777777643 5556677777777778888888888888762221111 111122222111111 1111111 0
Q ss_pred -------C--CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhh-hcCccccchhhhHhhhh
Q 038758 158 -------Q--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ-VKGVKLGKAIHGYVLRH 227 (354)
Q Consensus 158 -------~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~ 227 (354)
. .....|-..+....+.++.+.|..+|+..+ ..+. +...|......-.. .++.+.|..+|+...+.
T Consensus 274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~--~~~~--~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELG--NEGV--GPHVFIYCAFIEYYATGSRATPYNIFSSGLLK 349 (493)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TSCC--CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred cchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhh--CCCC--ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 0 112345555666666777888888888773 3322 22222211111112 23577788888776664
Q ss_pred ccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 038758 228 HIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDV 279 (354)
Q Consensus 228 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 279 (354)
.. .+...|...+....+.|+.+.|..+|++.
T Consensus 350 ~~---------------------~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 350 HP---------------------DSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp CT---------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred CC---------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 32 12223444555555666666666666665
No 192
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.33 E-value=0.00095 Score=46.47 Aligned_cols=78 Identities=10% Similarity=0.060 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758 47 EEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 47 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
+.+++.|++..+.. +.+...+..+...+...|++++|.+.|+...+.. +.+...+..+..+|...|++++|...|++.
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35677777777653 3355667777788888888888888888888764 445667788888888888888888888775
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.28 E-value=0.00035 Score=60.22 Aligned_cols=133 Identities=6% Similarity=-0.024 Sum_probs=79.3
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchh
Q 038758 68 CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147 (354)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~ 147 (354)
+..+...+.+.|++++|.+.|+...+.- ++.. .....+.+. ..-+.+...|..+..+|.+.|+++
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~~~~~~---~~~~~~~~~~~nla~~~~~~g~~~ 290 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAEDADGA---KLQPVALSCVLNIGACKLKMSDWQ 290 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSCHHHHG---GGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccChHHHH---HHHHHHHHHHHHHHHHHHhccCHH
Confidence 5566677778888888888888877631 0000 000000000 000123345556666666666666
Q ss_pred HHHHHhccCCC---CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCC-CcchHHHHHHHhhhhcCccccch
Q 038758 148 VSHCKFSKIKQ---KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP-NTISLSGVLAACAQVKGVKLGKA 219 (354)
Q Consensus 148 ~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~ 219 (354)
+|...+++..+ .+...|..+..+|.+.|++++|.+.|++.. . +.| +...+..+..++.+.++.+++.+
T Consensus 291 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al--~--l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 291 GAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ--E--IAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--H--HCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHH--H--hCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665543 345677788888889999999999998886 2 234 34455556666666666555543
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.25 E-value=0.0015 Score=48.31 Aligned_cols=93 Identities=14% Similarity=0.055 Sum_probs=70.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCC--------c-----ccHHHHHHHHhccCChhhHHHHHHHHHHh----
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPD--------H-----FVCPKVYKACSELKDYRVGKDVYDYMISI---- 94 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--------~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---- 94 (354)
.+...-..+.+.|++++|+..|++..+. .|+ . ..|..+-.++.+.|++++|...++..++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3455566778899999999999998875 344 1 26788888888999999999999888875
Q ss_pred -ccCC-Cceeh----hhHHHHHHhcCChhHHHHHHHhh
Q 038758 95 -KFEG-NACVK----RPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 95 -~~~~-~~~~~----~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
.+.| +...| .....++...|++++|+..|++.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 1133 44566 77778888888888888887765
No 195
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.24 E-value=0.01 Score=49.84 Aligned_cols=141 Identities=6% Similarity=-0.084 Sum_probs=102.1
Q ss_pred hhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccC--ChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCC-hhHHHHH
Q 038758 46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK--DYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR-MEITSGL 122 (354)
Q Consensus 46 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~ 122 (354)
+++++.+++.+.... +-+...|+.--..+...+ +++++..+++.+.+.. +.|...|+.-..++...|. .+++.+.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 678999999998764 345566776666666666 4789999999999876 6788888888888888888 5889988
Q ss_pred HHhh----ccccchhhHHHHHHHhc--------------CchhHHHHHhccCCC--C-ChhhhHHHHHHHHhC-------
Q 038758 123 FEEM----DQDFLVNNSLIDFYAKC--------------RYLKVSHCKFSKIKQ--K-DLVSWNAMLAGYALG------- 174 (354)
Q Consensus 123 ~~~~----~~~~~~~~~li~~~~~~--------------~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~------- 174 (354)
++++ +.+...|+.....+.+. +.++++.+.+++... | |...|+-+--.+.+.
T Consensus 168 ~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~ 247 (331)
T 3dss_A 168 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELS 247 (331)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccc
Confidence 8888 55667777666655554 457778777776652 3 556676544444444
Q ss_pred ----CChhHHHHHHHHHH
Q 038758 175 ----GFREEVTNLLDEME 188 (354)
Q Consensus 175 ----~~~~~a~~~~~~m~ 188 (354)
+.++++++.++++.
T Consensus 248 ~~~~~~l~~el~~~~ell 265 (331)
T 3dss_A 248 VEKSTVLQSELESCKELQ 265 (331)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 34678888888886
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.22 E-value=0.002 Score=42.29 Aligned_cols=79 Identities=18% Similarity=0.246 Sum_probs=52.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|..+-..+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+...+..+..++.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 45566667777888888888888877653 2345556677777778888888888888777653 334445555555444
Q ss_pred h
Q 038758 112 K 112 (354)
Q Consensus 112 ~ 112 (354)
+
T Consensus 89 ~ 89 (91)
T 1na3_A 89 K 89 (91)
T ss_dssp H
T ss_pred h
Confidence 3
No 197
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.08 E-value=0.045 Score=45.92 Aligned_cols=227 Identities=8% Similarity=0.004 Sum_probs=138.1
Q ss_pred HHHhcCChh-HHHHHHHHHHhCCCcCCccc-HHHHHHHHhccCC----------hhhHHHHHHHHHHhccCCCceehhhH
Q 038758 39 MYNVLGYYE-EIVNLFYLMIDKGVRPDHFV-CPKVYKACSELKD----------YRVGKDVYDYMISIKFEGNACVKRPL 106 (354)
Q Consensus 39 ~~~~~~~~~-~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~l 106 (354)
...+.|.++ +|+++...+... .|+..| |+.--..+...+. ++++..+++.+.+.. +.+..+|+.-
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR 114 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHR 114 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 344566666 799999999875 455444 4433222222222 678888999888765 6678888888
Q ss_pred HHHHHhcCC--hhHHHHHHHhh----ccccchhhHHHHHHHhcCc-hhHHHHHhccCCC---CChhhhHHHHHHHHhC--
Q 038758 107 LDLFIKCGR--MEITSGLFEEM----DQDFLVNNSLIDFYAKCRY-LKVSHCKFSKIKQ---KDLVSWNAMLAGYALG-- 174 (354)
Q Consensus 107 i~~~~~~g~--~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~---~~~~~~~~li~~~~~~-- 174 (354)
..++.+.|+ ++++..+++++ +.+-.+|+.-...+.+.|. ++++.+.++++.+ .|...|+.....+.+.
T Consensus 115 ~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 115 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSC
T ss_pred HHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhh
Confidence 888888884 78999999988 5566778777777777787 5888888887764 3555676655555443
Q ss_pred ------------CChhHHHHHHHHHHhhhcCCCCC-cchHHHHHHHhhhh-cCccccchhhhHhhhhccccccccchhHH
Q 038758 175 ------------GFREEVTNLLDEMEMIQTDMQPN-TISLSGVLAACAQV-KGVKLGKAIHGYVLRHHIHLSTACGFVIC 240 (354)
Q Consensus 175 ------------~~~~~a~~~~~~m~~~~~~~~p~-~~t~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 240 (354)
+.++++++.++... . ..|+ ...|+-+--.+.+. |..... ....+.+++
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai--~--~~P~d~SaW~Y~r~ll~~~~~~~~~~--------------~~~~~~l~~ 256 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAF--F--TDPNDQSAWFYHRWLLGAGSGRCELS--------------VEKSTVLQS 256 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHH--H--HSTTCHHHHHHHHHHHHSSSCGGGCC--------------HHHHHHHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHH--H--hCCCCHHHHHHHHHHHHhccCccccc--------------hHHHHHHHH
Confidence 34677888887775 2 3344 34444332222222 100000 002234455
Q ss_pred HHHHhcccC--CCCcchHHHHHHH-----HHhcCCHHHHHHHHHHHHHcCcCCCHh
Q 038758 241 SCSVFNQLS--TRDVVVWNSIISA-----FVRSGQVVDALDLLRDVIVANVKPNTV 289 (354)
Q Consensus 241 a~~~~~~~~--~~~~~~~~~li~~-----~~~~g~~~~a~~~~~~m~~~g~~p~~~ 289 (354)
+++.++++. .||. .|+.+-.+ ....|..+++...+.++.+. .|...
T Consensus 257 el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--Dp~r~ 309 (331)
T 3dss_A 257 ELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRA 309 (331)
T ss_dssp HHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH--CGGGH
T ss_pred HHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh--Ccchh
Confidence 555555544 4554 45432222 22457778888888888754 45443
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.06 E-value=0.0016 Score=47.23 Aligned_cols=113 Identities=4% Similarity=-0.089 Sum_probs=74.4
Q ss_pred hcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHh----cCChh
Q 038758 42 VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIK----CGRME 117 (354)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~ 117 (354)
-.+++++|++.|++..+.| .|+.. |-..|...+.+++|.+.|+...+.| +...+..|-..|.. .++++
T Consensus 7 ~~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHH
Confidence 3457788888888888776 33322 5555666667777888888777664 44556666666666 56666
Q ss_pred HHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCC-CCChhhhHHHHHHHHh----CCChhHHHHHHHHHHhhhc
Q 038758 118 ITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK-QKDLVSWNAMLAGYAL----GGFREEVTNLLDEMEMIQT 192 (354)
Q Consensus 118 ~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~ 192 (354)
+|.+.|++. . ..+...+..|-..|.. .+++++|.++|+... +.
T Consensus 79 ~A~~~~~~A------------------------------a~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa--~~ 126 (138)
T 1klx_A 79 KAAQYYSKA------------------------------CGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC--RL 126 (138)
T ss_dssp HHHHHHHHH------------------------------HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH--HT
T ss_pred HHHHHHHHH------------------------------HcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH--HC
Confidence 666666553 1 1355566667777777 778888888888776 54
Q ss_pred CC
Q 038758 193 DM 194 (354)
Q Consensus 193 ~~ 194 (354)
|.
T Consensus 127 g~ 128 (138)
T 1klx_A 127 GS 128 (138)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.02 E-value=0.00088 Score=48.65 Aligned_cols=114 Identities=10% Similarity=-0.120 Sum_probs=80.3
Q ss_pred cCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCC
Q 038758 78 LKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157 (354)
Q Consensus 78 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 157 (354)
.+++++|.+.|+...+.| .|... |-..|...+.+++|.+.|++. ..
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~A-----------------------------a~ 53 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKA-----------------------------CE 53 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHH-----------------------------HH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHH-----------------------------Hc
Confidence 456778888888887776 33333 555566666666666655542 01
Q ss_pred CCChhhhHHHHHHHHh----CCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhh----hcCccccchhhhHhhhhcc
Q 038758 158 QKDLVSWNAMLAGYAL----GGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQ----VKGVKLGKAIHGYVLRHHI 229 (354)
Q Consensus 158 ~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~ 229 (354)
..+...+..|-..|.. .+++++|.++|+..- +.|. ...+..+-..|.. .++.++|...++...+.|.
T Consensus 54 ~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa--~~g~---~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 54 LNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKAC--GLND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH--HTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH--cCCC---HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 2466677778888887 789999999999987 5543 4456666666766 7899999999999888765
Q ss_pred c
Q 038758 230 H 230 (354)
Q Consensus 230 ~ 230 (354)
.
T Consensus 129 ~ 129 (138)
T 1klx_A 129 E 129 (138)
T ss_dssp H
T ss_pred H
Confidence 3
No 200
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.02 E-value=0.0048 Score=58.90 Aligned_cols=154 Identities=9% Similarity=0.020 Sum_probs=97.0
Q ss_pred HhccCChhhHHH-HHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHh
Q 038758 75 CSELKDYRVGKD-VYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKF 153 (354)
Q Consensus 75 ~~~~~~~~~a~~-~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 153 (354)
....++++.|.+ ++..+ |+......++..+.+.|..+.|.++.+.- ..-.......|++++|.++.
T Consensus 609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~-------~~~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQ-------DQKFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH-------HHHHHHHHHHTCHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCc-------chheehhhhcCCHHHHHHHH
Confidence 345566766655 44111 10112266777778888888887665432 12244566789999999988
Q ss_pred ccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc
Q 038758 154 SKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST 233 (354)
Q Consensus 154 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 233 (354)
+.+. +...|..+...+.+.++++.|.+.|..+. -|..+...+...++.+...++-+.....|.
T Consensus 676 ~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~-----------d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~---- 738 (814)
T 3mkq_A 676 TDES--AEMKWRALGDASLQRFNFKLAIEAFTNAH-----------DLESLFLLHSSFNNKEGLVTLAKDAETTGK---- 738 (814)
T ss_dssp TTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHT-----------CHHHHHHHHHHTTCHHHHHHHHHHHHHTTC----
T ss_pred HhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHcc-----------ChhhhHHHHHHcCCHHHHHHHHHHHHHcCc----
Confidence 8774 56789999999999999999999999886 144555555556666655555444443332
Q ss_pred ccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038758 234 ACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280 (354)
Q Consensus 234 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 280 (354)
++.-...|.+.|++++|++++.++.
T Consensus 739 ----------------------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 739 ----------------------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp ----------------------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred ----------------------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 3444445555666666666665553
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.00 E-value=0.0015 Score=45.42 Aligned_cols=78 Identities=9% Similarity=0.022 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCCChh
Q 038758 83 VGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV 162 (354)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 162 (354)
.+.+.|+...+.. +.+...+..+...|...|++++|...|++. .++ ...+..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-----------------------l~~----~p~~~~ 54 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAA-----------------------LDF----DPTYSV 54 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------------HHH----CTTCHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH-----------------------HHH----CCCcHH
Confidence 4566676666553 445667777777777788888877776654 000 112344
Q ss_pred hhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 163 SWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 163 ~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
.|..+...+...|++++|...|+...
T Consensus 55 ~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 55 AWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56666667777777777777777665
No 202
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.98 E-value=0.006 Score=45.06 Aligned_cols=101 Identities=17% Similarity=0.168 Sum_probs=61.9
Q ss_pred hHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCC----C-----cchHHHHHHHhhhhcCccccchhhhHhhhhccccccc
Q 038758 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQP----N-----TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTA 234 (354)
Q Consensus 164 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p----~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 234 (354)
+......+.+.|++++|++.|+...+....... + ...|...-.++.+.|++++|...++..++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l------- 86 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY------- 86 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------
Confidence 334445566667777777777666521111100 1 115666666666677777666666555443
Q ss_pred cchhHHHHHHhcccC---CCCcchH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 038758 235 CGFVICSCSVFNQLS---TRDVVVW----NSIISAFVRSGQVVDALDLLRDVIV 281 (354)
Q Consensus 235 ~~~~~~a~~~~~~~~---~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 281 (354)
|++-. +.+...| ...-.++...|++++|+..|++..+
T Consensus 87 ----------~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 87 ----------FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp ----------HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 11111 2345677 8888999999999999999999875
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.95 E-value=0.003 Score=42.71 Aligned_cols=60 Identities=7% Similarity=0.061 Sum_probs=33.6
Q ss_pred ccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758 66 FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
..+..+...+...|++++|...|+...+.. +.+...|..+..+|...|++++|.+.|++.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555555556666666666666655543 334445555666666666666666555543
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.93 E-value=0.0026 Score=41.72 Aligned_cols=61 Identities=15% Similarity=0.144 Sum_probs=47.5
Q ss_pred cccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758 65 HFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 65 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
...+..+...+...|++++|.+.++...+.. +.+...+..+..++.+.|++++|...|++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3456677777888889999999998888764 445667778888888888888888887775
No 205
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.80 E-value=0.031 Score=51.02 Aligned_cols=168 Identities=8% Similarity=-0.023 Sum_probs=123.0
Q ss_pred hcCChhHHHHHHHHHHhCCCcCCcc-cHHHHHHHHhccCC----------hhhHHHHHHHHHHhccCCCceehhhHHHHH
Q 038758 42 VLGYYEEIVNLFYLMIDKGVRPDHF-VCPKVYKACSELKD----------YRVGKDVYDYMISIKFEGNACVKRPLLDLF 110 (354)
Q Consensus 42 ~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 110 (354)
.....++|++.++++... .|+.. .|+.--..+...|+ ++++.+.++.+.+.. +.+..+|+.-..++
T Consensus 41 ~~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l 117 (567)
T 1dce_A 41 AGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (567)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 334456789999999886 44443 46655455555555 899999999999876 66788888888888
Q ss_pred HhcC--ChhHHHHHHHhh----ccccchhhHHHHHHHhcC-chhHHHHHhccCCCC---ChhhhHHHHHHHHhC------
Q 038758 111 IKCG--RMEITSGLFEEM----DQDFLVNNSLIDFYAKCR-YLKVSHCKFSKIKQK---DLVSWNAMLAGYALG------ 174 (354)
Q Consensus 111 ~~~g--~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~------ 174 (354)
.+.| +++++.+.++++ +.+..+|+.-...+.+.| .++++.+.++++.+. |...|+.....+.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9999 669999999998 556778888888888888 899999999988763 456677666665553
Q ss_pred --------CChhHHHHHHHHHHhhhcCCCC-CcchHHHHHHHhhhhcCccc
Q 038758 175 --------GFREEVTNLLDEMEMIQTDMQP-NTISLSGVLAACAQVKGVKL 216 (354)
Q Consensus 175 --------~~~~~a~~~~~~m~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~ 216 (354)
+.++++++.++... . +.| |...|...-..+.+.+..++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai--~--~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAF--F--TDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHH--H--HCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHH--h--hCCCCccHHHHHHHHHhcCCCccc
Confidence 44688888888776 2 334 45567666666666666444
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.71 E-value=0.0038 Score=46.00 Aligned_cols=72 Identities=8% Similarity=-0.018 Sum_probs=46.7
Q ss_pred HhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChh----------hHHHHHHHHHHhccCCCceehhhHHHHH
Q 038758 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYR----------VGKDVYDYMISIKFEGNACVKRPLLDLF 110 (354)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~----------~a~~~~~~m~~~~~~~~~~~~~~li~~~ 110 (354)
.+.+.+++|.+.++...+.. +-+...|..+-.++...++++ +|+..|++..+.. +.+...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 45567788888888877764 335566666666776666543 6777777766654 33455666676666
Q ss_pred HhcC
Q 038758 111 IKCG 114 (354)
Q Consensus 111 ~~~g 114 (354)
...|
T Consensus 91 ~~lg 94 (158)
T 1zu2_A 91 TSFA 94 (158)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.58 E-value=0.0084 Score=40.43 Aligned_cols=81 Identities=15% Similarity=0.023 Sum_probs=61.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhcc-CCCceehhhHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKF-EGNACVKRPLLDLF 110 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~ 110 (354)
.|..+-..+.+.|++++|...|++..+.+ +-+...|..+..++...|++++|.+.|+...+..- .++......+...+
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~l 87 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAK 87 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHHH
Confidence 56778888999999999999999999875 33566788999999999999999999999886531 34444444444444
Q ss_pred Hhc
Q 038758 111 IKC 113 (354)
Q Consensus 111 ~~~ 113 (354)
...
T Consensus 88 ~~~ 90 (100)
T 3ma5_A 88 LKA 90 (100)
T ss_dssp HHH
T ss_pred HHc
Confidence 433
No 208
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.37 E-value=0.0028 Score=55.57 Aligned_cols=64 Identities=5% Similarity=-0.169 Sum_probs=31.5
Q ss_pred hhHHHHHHHHhCCChhHHHHHHHHHHhhh---cC-CCCC-cchHHHHHHHhhhhcCccccchhhhHhhh
Q 038758 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQ---TD-MQPN-TISLSGVLAACAQVKGVKLGKAIHGYVLR 226 (354)
Q Consensus 163 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~-~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 226 (354)
+++.|...|...|++++|..++++..... .| -.|+ ..+++.+-..|...|++++|+.++++.++
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 45555555555555555555555442100 01 1122 34455555555555555555555555543
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.35 E-value=0.0066 Score=53.25 Aligned_cols=88 Identities=10% Similarity=-0.035 Sum_probs=50.6
Q ss_pred cCChhhHHHHHHHHHHhc---cCCC----ceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHH
Q 038758 78 LKDYRVGKDVYDYMISIK---FEGN----ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSH 150 (354)
Q Consensus 78 ~~~~~~a~~~~~~m~~~~---~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 150 (354)
.|++++|..++++..+.. +.|+ ..+++.|..+|...|++++|+.++++ ++
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~-----------------------aL 367 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQK-----------------------II 367 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------------------HH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHH-----------------------HH
Confidence 345555555555554321 1121 23455555555555555555555443 33
Q ss_pred HHhccCCC---CC-hhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 151 CKFSKIKQ---KD-LVSWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 151 ~~~~~~~~---~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
.++++... |+ ..+++.|...|...|++++|..+|++..
T Consensus 368 ~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 368 KPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 33333332 33 3468888899999999999999888775
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.34 E-value=0.0027 Score=46.80 Aligned_cols=111 Identities=10% Similarity=0.007 Sum_probs=65.8
Q ss_pred hccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhcc
Q 038758 76 SELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSK 155 (354)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 155 (354)
.+.+.+++|.+.++...+.. +.+...|..+..++...++++.+....+ .+++|+..|++
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~--------------------~~~eAi~~le~ 71 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQ--------------------MIQEAITKFEE 71 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHH--------------------HHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHh--------------------HHHHHHHHHHH
Confidence 45567888888888888776 6677888888888888877653322111 13344444444
Q ss_pred CCC--C-ChhhhHHHHHHHHhC-----------CChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhh
Q 038758 156 IKQ--K-DLVSWNAMLAGYALG-----------GFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQV 211 (354)
Q Consensus 156 ~~~--~-~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~ 211 (354)
..+ | +...|..+-.+|... |++++|.+.|++.. .+.|+...|..-+...-+.
T Consensus 72 AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl----~l~P~~~~y~~al~~~~ka 137 (158)
T 1zu2_A 72 ALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAV----DEQPDNTHYLKSLEMTAKA 137 (158)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHTH
T ss_pred HHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHhC
Confidence 332 2 234455555555544 36666666666665 3456666666655554443
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.34 E-value=0.011 Score=51.79 Aligned_cols=90 Identities=11% Similarity=0.018 Sum_probs=62.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC---CcCC----cccHHHHHHHHhccCChhhHHHHHHHHHHhc---cCC----Cce
Q 038758 36 MMGMYNVLGYYEEIVNLFYLMIDKG---VRPD----HFVCPKVYKACSELKDYRVGKDVYDYMISIK---FEG----NAC 101 (354)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~~~---~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~----~~~ 101 (354)
.+..+.+.|++++|.+++++..+.. +.|+ ..+++.|..+|...|++++|..++++..+.- +.| ...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3455667788888888888876542 2232 3357778888888888888888888776431 122 234
Q ss_pred ehhhHHHHHHhcCChhHHHHHHHh
Q 038758 102 VKRPLLDLFIKCGRMEITSGLFEE 125 (354)
Q Consensus 102 ~~~~li~~~~~~g~~~~a~~~~~~ 125 (354)
+++.|...|...|++++|+.++++
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 677788888888888888877665
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.27 E-value=0.024 Score=53.99 Aligned_cols=95 Identities=14% Similarity=0.088 Sum_probs=45.4
Q ss_pred HhcCChhHHHH-HHHhhc-cccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 111 IKCGRMEITSG-LFEEMD-QDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 111 ~~~g~~~~a~~-~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
...+++++|.+ ++..++ .. ....++..+.+.|..++|.++.+. +. .-.......|+++.|.++.+.+.
T Consensus 610 ~~~~~~~~a~~~~l~~i~~~~--~~~~~~~~l~~~~~~~~a~~~~~~---~~-----~~f~~~l~~~~~~~A~~~~~~~~ 679 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEGKD--SLTKIARFLEGQEYYEEALNISPD---QD-----QKFELALKVGQLTLARDLLTDES 679 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCCHH--HHHHHHHHHHHTTCHHHHHHHCCC---HH-----HHHHHHHHHTCHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHhcCCchH--HHHHHHHHHHhCCChHHheecCCC---cc-----hheehhhhcCCHHHHHHHHHhhC
Confidence 34556666655 443222 11 114455555555666665555432 10 11222344566666655544332
Q ss_pred hhhcCCCCCcchHHHHHHHhhhhcCccccchhhhH
Q 038758 189 MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223 (354)
Q Consensus 189 ~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 223 (354)
+...|..+...+.+.++++.|++.|..
T Consensus 680 --------~~~~W~~la~~al~~~~~~~A~~~y~~ 706 (814)
T 3mkq_A 680 --------AEMKWRALGDASLQRFNFKLAIEAFTN 706 (814)
T ss_dssp --------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --------cHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334555555555555555555555543
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.22 E-value=0.0046 Score=54.26 Aligned_cols=93 Identities=11% Similarity=-0.104 Sum_probs=55.1
Q ss_pred HHHhccCChhhHHHHHHHHHHhc---cCCC----ceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCc
Q 038758 73 KACSELKDYRVGKDVYDYMISIK---FEGN----ACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRY 145 (354)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~m~~~~---~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~ 145 (354)
..+.+.|++++|...++...+.. +.|+ ..+++.|..+|...|++++|+.++++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~-------------------- 354 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTR-------------------- 354 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHH--------------------
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHH--------------------
Confidence 33445566666666666655321 1121 23455566666666666666665444
Q ss_pred hhHHHHHhccCCC---CC-hhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 146 LKVSHCKFSKIKQ---KD-LVSWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 146 ~~~a~~~~~~~~~---~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
++.+++.... |+ ..+++.|...|...|++++|..++++..
T Consensus 355 ---~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 355 ---TMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp ---HHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---HHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3333333322 22 3468888889999999999999888774
No 214
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.21 E-value=0.053 Score=49.44 Aligned_cols=146 Identities=6% Similarity=-0.083 Sum_probs=108.6
Q ss_pred hHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccC--ChhhHHHHHHHHHHhccCCC
Q 038758 32 NWTSMMGMYNVLGY----------YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK--DYRVGKDVYDYMISIKFEGN 99 (354)
Q Consensus 32 ~y~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~ 99 (354)
+|+.=-..+...|+ ++++++.++.+.+.. +-+...|+.--..+.+.+ +++++.+.++.+.+.. +-|
T Consensus 65 aW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N 142 (567)
T 1dce_A 65 LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERN 142 (567)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-ccc
Confidence 66665555555566 899999999999875 345666777777778888 6699999999999986 668
Q ss_pred ceehhhHHHHHHhcC-ChhHHHHHHHhh----ccccchhhHHHHHHHhc--------------CchhHHHHHhccCCC--
Q 038758 100 ACVKRPLLDLFIKCG-RMEITSGLFEEM----DQDFLVNNSLIDFYAKC--------------RYLKVSHCKFSKIKQ-- 158 (354)
Q Consensus 100 ~~~~~~li~~~~~~g-~~~~a~~~~~~~----~~~~~~~~~li~~~~~~--------------~~~~~a~~~~~~~~~-- 158 (354)
...|+.-..++.+.| ..+++.+.++++ +.+...|+.....+.+. +.++++.+.+++...
T Consensus 143 ~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 143 FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC
Confidence 888988888888888 899999999988 45667777766666553 556777777765542
Q ss_pred C-ChhhhHHHHHHHHhCCChhH
Q 038758 159 K-DLVSWNAMLAGYALGGFREE 179 (354)
Q Consensus 159 ~-~~~~~~~li~~~~~~~~~~~ 179 (354)
| |...|+..-..+.+.++.++
T Consensus 223 P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 223 PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCSHHHHHHHHHHSCCCCCSC
T ss_pred CCCccHHHHHHHHHhcCCCccc
Confidence 3 56667776666666665443
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.15 E-value=0.015 Score=38.77 Aligned_cols=58 Identities=12% Similarity=0.088 Sum_probs=39.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCcCCcc-cHHHHHHHHhccCChhhHHHHHHHHHHhc
Q 038758 37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHF-VCPKVYKACSELKDYRVGKDVYDYMISIK 95 (354)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 95 (354)
...+.+.|++++|...|++..+.. +.+.. .+..+...+...|++++|.+.|+...+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345667777888888887777653 22334 56666677777777777877777777653
No 216
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.04 E-value=0.0011 Score=57.76 Aligned_cols=245 Identities=9% Similarity=0.071 Sum_probs=152.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFI 111 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 111 (354)
.|..|-.+....++..+|.+-|-+ .-|...|..++.+..+.|.++.-.+++....+. ..++.+=+.|+-+|+
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayA 127 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA 127 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHH
Confidence 777888888888877777665522 236667888899888999998888887765544 344455668888999
Q ss_pred hcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCC------------------------CChhhhHHH
Q 038758 112 KCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ------------------------KDLVSWNAM 167 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~------------------------~~~~~~~~l 167 (354)
+.++..+.++++.. |+..-...+.+-|...|.++.|.-+|..+.. .++.||..+
T Consensus 128 k~~rL~elEefl~~--~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV 205 (624)
T 3lvg_A 128 KTNRLAELEEFING--PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEV 205 (624)
T ss_dssp TSCSSSTTTSTTSC--CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHH
T ss_pred hhCcHHHHHHHHcC--CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHH
Confidence 98888776655443 5555556677777777777777777766642 356677777
Q ss_pred HHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcc
Q 038758 168 LAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQ 247 (354)
Q Consensus 168 i~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 247 (354)
-.+|+..+++..|.-.=-.+. ........+++.|-..|.+++...+++.-....
T Consensus 206 ~~ACvd~~EfrLAqicGLniI-------vhadeL~elv~~YE~~G~f~ELIsLlEaglglE------------------- 259 (624)
T 3lvg_A 206 CFACVDGKEFRLAQMCGLHIV-------VHADELEELINYYQDRGYFEELITMLEAALGLE------------------- 259 (624)
T ss_dssp THHHHHSCTTTTTTHHHHHHH-------CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-------------------
T ss_pred HHHHhCchHHHHHHHhcchhc-------ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-------------------
Confidence 777777777766543322222 111222334455666666666666665444211
Q ss_pred cCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCC
Q 038758 248 LSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGA 327 (354)
Q Consensus 248 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 327 (354)
......|+-|--.|+|- ++++.++-++-.- -+.|. .-+|++|.+.. .|.-++-.|++-.+
T Consensus 260 --rAHmGmFTELaILYsKY-~PeKlmEHlklf~---sriNi---pKviracE~ah-----------LW~ElvfLY~~ydE 319 (624)
T 3lvg_A 260 --RAHMGMFTELAILYSKF-KPQKMREHLELFW---SRVNI---PKVLRAAEQAH-----------LWAELVFLYDKYEE 319 (624)
T ss_dssp --TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSS---SSSCC---TTTHHHHTTTT-----------CHHHHHHHHHHHTC
T ss_pred --chhHHHHHHHHHHHHhc-CHHHHHHHHHHHH---HhccH---HHHHHHHHHHh-----------hHHHHHHHHhcchh
Confidence 45667788887777775 3444444333221 12222 23455555444 37777777777777
Q ss_pred hhHHH
Q 038758 328 IQKSR 332 (354)
Q Consensus 328 ~~~A~ 332 (354)
+|.|.
T Consensus 320 ~DnA~ 324 (624)
T 3lvg_A 320 YDNAI 324 (624)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 217
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.02 E-value=0.24 Score=35.07 Aligned_cols=47 Identities=19% Similarity=0.113 Sum_probs=27.6
Q ss_pred HHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHH
Q 038758 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYD 89 (354)
Q Consensus 40 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 89 (354)
+...|..++..++..+.... .+..-||.+|--....-+-+...++++
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd 63 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLD 63 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHH
Confidence 34457777777777777653 355557776655555545444444443
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.02 E-value=0.019 Score=38.28 Aligned_cols=55 Identities=7% Similarity=0.015 Sum_probs=43.0
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhccCCCce-ehhhHHHHHHhcCChhHHHHHHHhh
Q 038758 71 VYKACSELKDYRVGKDVYDYMISIKFEGNAC-VKRPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 71 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
....+...|++++|.+.++...+.. +.+.. .+..+..+|...|++++|.+.|++.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445677888999999998888764 44556 7788888888888888888888876
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.079 Score=39.64 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=25.0
Q ss_pred HHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCC
Q 038758 108 DLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157 (354)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 157 (354)
......|+++.|.++.+++ .+...|..|.....+.|+++-|++.|++..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHhcCCHHHHHHHHHHh-CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 3345556666666655544 234445555555555555555555554443
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.66 E-value=0.053 Score=45.96 Aligned_cols=136 Identities=7% Similarity=-0.001 Sum_probs=74.3
Q ss_pred CcCCcccHHHHHHHHhc-----cCChhhHHHHHHHHHHhccCCC-ceehhhHHHHHHhc---C-----Chh---HHHHHH
Q 038758 61 VRPDHFVCPKVYKACSE-----LKDYRVGKDVYDYMISIKFEGN-ACVKRPLLDLFIKC---G-----RME---ITSGLF 123 (354)
Q Consensus 61 ~~p~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~---g-----~~~---~a~~~~ 123 (354)
.+.+...|...+++... ..+..+|..+|++..+. .|+ ...+..+..+|... + ... .+.+..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 35566677777766542 23457788888888876 443 34444443333211 1 000 111111
Q ss_pred Hhh---ccccchhhHHHHHHHhcCchhHHHHHhccCCC--CChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCc
Q 038758 124 EEM---DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNT 198 (354)
Q Consensus 124 ~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~ 198 (354)
..+ +.+..+|..+...+...|++++|...+++... |+...|..+-..+.-.|++++|.+.|++.. .+.|..
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Al----rL~P~~ 343 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAF----NLRPGA 343 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHSCSH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----hcCCCc
Confidence 111 33445555555555566777777777766653 555555555566667777777777777665 234555
Q ss_pred chHH
Q 038758 199 ISLS 202 (354)
Q Consensus 199 ~t~~ 202 (354)
.||.
T Consensus 344 ~t~~ 347 (372)
T 3ly7_A 344 NTLY 347 (372)
T ss_dssp HHHH
T ss_pred ChHH
Confidence 5544
No 221
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.48 E-value=0.007 Score=52.84 Aligned_cols=222 Identities=12% Similarity=0.065 Sum_probs=132.8
Q ss_pred CceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCC--CChhhhHHHHHHHHhCCC
Q 038758 99 NACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KDLVSWNAMLAGYALGGF 176 (354)
Q Consensus 99 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~ 176 (354)
.+.+|..|..+..+.|++.+|.+-|-+ -.|+..|..+|....+.|.+++-.+.+...++ .++..=+.|+-+|++.++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk-A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~r 131 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK-ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNR 131 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC-CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCS
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCc
Confidence 455677777777777777776654443 24566667777777777777777777766654 455556677777877777
Q ss_pred hhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcccccc--ccchhHHHHHHhcccCCCCcc
Q 038758 177 REEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLST--ACGFVICSCSVFNQLSTRDVV 254 (354)
Q Consensus 177 ~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~~~ 254 (354)
..+..+++ -.||..-...+-.-|...|.++.|.-+|..+.+...-... ..|++..|.+.-.+ ..+..
T Consensus 132 L~elEefl---------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK--Ans~k 200 (624)
T 3lvg_A 132 LAELEEFI---------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK--ANSTR 200 (624)
T ss_dssp SSTTTSTT---------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT--CCSSC
T ss_pred HHHHHHHH---------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh--cCChh
Confidence 65543332 2366666677777777777777777777666544322111 44555544433332 34667
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCc----------cccchhHHHHHHHHHHh
Q 038758 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQG----------LGTGSFVWNALIDMYGR 324 (354)
Q Consensus 255 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~----------~~~~~~~~~~li~~~~~ 324 (354)
||--+-.+|...+.+.-|...--.+.- .|| ....++..|-..|-+++- -+.-...|+-|.-.|+|
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 275 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh
Confidence 888888888888877666544333321 122 122344455555555552 22345567777777776
Q ss_pred cCChhHHHHHhhcC
Q 038758 325 CGAIQKSRKIFVLM 338 (354)
Q Consensus 325 ~g~~~~A~~~~~~m 338 (354)
-. +++.++.++..
T Consensus 276 Y~-PeKlmEHlklf 288 (624)
T 3lvg_A 276 FK-PQKMREHLELF 288 (624)
T ss_dssp SC-TTHHHHHHTTS
T ss_pred cC-HHHHHHHHHHH
Confidence 63 45555555543
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.22 E-value=0.67 Score=34.63 Aligned_cols=129 Identities=13% Similarity=0.051 Sum_probs=87.0
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhH
Q 038758 39 MYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEI 118 (354)
Q Consensus 39 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 118 (354)
.....|+++.|.++.+.+ -+...|..|-......|+++-|.++|..... +..+.-.|.-.|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 345679999999998776 2566799999999999999999999987654 4566677777787766
Q ss_pred HHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 119 TSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 119 a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
..++-+. -....-++.....+.-.|+++++.++|.+..+.+.. .......|..+.|.++.+++.
T Consensus 79 L~kla~i-A~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA-----~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 79 LSKMQNI-AQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPLA-----YAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHH-HHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH-----HHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHH-HHHCccHHHHHHHHHHcCCHHHHHHHHHHCCChHHH-----HHHHHHcCcHHHHHHHHHHhC
Confidence 5543322 223334566666777788888888888776552211 111122466677777777663
No 223
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.57 E-value=0.82 Score=32.42 Aligned_cols=146 Identities=11% Similarity=-0.003 Sum_probs=87.8
Q ss_pred HHHHHHH--HhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhc--cccchhhHHHHHHHhc
Q 038758 68 CPKVYKA--CSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD--QDFLVNNSLIDFYAKC 143 (354)
Q Consensus 68 ~~~ll~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~li~~~~~~ 143 (354)
...|+.+ ..-.|.+++..++..+..+.. +..-||=+|.-....-+=+-..++++.+. -|. ..+
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi----------s~C 74 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL----------DKC 74 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG----------GGC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc----------Hhh
Confidence 3444444 345688888999988887642 33344444444444444455555555441 111 123
Q ss_pred CchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhH
Q 038758 144 RYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGY 223 (354)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 223 (354)
|++......+-.+. .++...+..+.....+|+-++-.+++.++. .+.+|++...-.+..||.+.|+..++.+++.+
T Consensus 75 ~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l---~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 75 QNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREIL---KNNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp SCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHh---ccCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 33444444443332 355566677777777888877777777762 35666777777777788888888888888777
Q ss_pred hhhhccc
Q 038758 224 VLRHHIH 230 (354)
Q Consensus 224 ~~~~~~~ 230 (354)
.-+.|+.
T Consensus 151 AC~kG~k 157 (172)
T 1wy6_A 151 ACKKGEK 157 (172)
T ss_dssp HHHTTCH
T ss_pred HHHhhhH
Confidence 7777654
No 224
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.42 E-value=0.26 Score=41.75 Aligned_cols=145 Identities=6% Similarity=-0.044 Sum_probs=89.2
Q ss_pred hccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCc-ccHHHHHHHHhc---cC--ChhhHH--
Q 038758 14 CGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH-FVCPKVYKACSE---LK--DYRVGK-- 85 (354)
Q Consensus 14 ~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~---~~--~~~~a~-- 85 (354)
.+.+.++..|...+++...++ . ....++.+|..+|++..+. .|+- ..|..+..++.. .+ .-....
T Consensus 188 ~~~p~~~~Aydl~Lra~~~l~----~-~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l 260 (372)
T 3ly7_A 188 KILPHRGALLTNFYQAHDYLL----H-GDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAAL 260 (372)
T ss_dssp HHSCSSGGGHHHHHHHHHHHH----H-CSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHH----c-CCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHH
Confidence 344556665555554431111 0 1234568999999999986 4543 334443333321 11 111111
Q ss_pred -HHHHHHHHh-ccCCCceehhhHHHHHHhcCChhHHHHHHHhh---ccccchhhHHHHHHHhcCchhHHHHHhccCCC--
Q 038758 86 -DVYDYMISI-KFEGNACVKRPLLDLFIKCGRMEITSGLFEEM---DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ-- 158 (354)
Q Consensus 86 -~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-- 158 (354)
+-++..... ..+.+..+|..+...+...|++++|...+++. .++...|..+...+.-.|+.++|.+.|++...
T Consensus 261 ~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 261 NTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 122211111 22567778888888888889999999999998 66666666778889999999999999987763
Q ss_pred CChhhhH
Q 038758 159 KDLVSWN 165 (354)
Q Consensus 159 ~~~~~~~ 165 (354)
|...+|.
T Consensus 341 P~~~t~~ 347 (372)
T 3ly7_A 341 PGANTLY 347 (372)
T ss_dssp CSHHHHH
T ss_pred CCcChHH
Confidence 6665554
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.31 E-value=0.24 Score=32.73 Aligned_cols=66 Identities=11% Similarity=0.017 Sum_probs=45.6
Q ss_pred CcchHHHHHHHhhhhcC---ccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHH
Q 038758 197 NTISLSGVLAACAQVKG---VKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDAL 273 (354)
Q Consensus 197 ~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 273 (354)
|...+..+..++...++ .+++..++++.++.. +.+......+-..+.+.|++++|+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d---------------------p~~~rA~~~lg~~~~~~g~y~~Ai 63 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE---------------------PYNEAALSLIANDHFISFRFQEAI 63 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC---------------------cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 34444555555543333 567777777776664 345667777788899999999999
Q ss_pred HHHHHHHHcC
Q 038758 274 DLLRDVIVAN 283 (354)
Q Consensus 274 ~~~~~m~~~g 283 (354)
..|+++.+..
T Consensus 64 ~~w~~~l~~~ 73 (93)
T 3bee_A 64 DTWVLLLDSN 73 (93)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHhhC
Confidence 9999998753
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.97 E-value=0.12 Score=34.94 Aligned_cols=64 Identities=13% Similarity=-0.022 Sum_probs=44.6
Q ss_pred CCcccHHHHHHHHhccCChhhHHHHHHHHHHhcc------CCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758 63 PDHFVCPKVYKACSELKDYRVGKDVYDYMISIKF------EGNACVKRPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 63 p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
.+...+..+...+.+.++++.|...|+...+.-- .+...++..|..++.+.|+++.|...+++.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3455566777788888888888888888776521 223445667777777777777777777665
No 227
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.87 E-value=0.12 Score=48.40 Aligned_cols=124 Identities=7% Similarity=0.019 Sum_probs=78.9
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCC-hhhHHHHHHHHHHh------ccCCCc-----
Q 038758 34 TSMMGMYNVLGY-YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD-YRVGKDVYDYMISI------KFEGNA----- 100 (354)
Q Consensus 34 ~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~------~~~~~~----- 100 (354)
.+|++.+...|+ .+.|..+|+++.+....-+......++..+...++ --+|.+++.+..+. ..++..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 446666666777 57899999999887432222222233333333332 22344555444321 112211
Q ss_pred ------eehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCC
Q 038758 101 ------CVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIK 157 (354)
Q Consensus 101 ------~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 157 (354)
.....-...+...|+++-|+.+-++. +.+-.+|..|..+|.+.|+++.|+-.+..++
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 12222244567789999999998887 5567799999999999999999999998886
No 228
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.61 E-value=0.22 Score=32.90 Aligned_cols=45 Identities=4% Similarity=-0.062 Sum_probs=21.4
Q ss_pred hhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758 81 YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
.++|..++++..+.. +-++.....+...+.+.|++++|...|+++
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~ 69 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLL 69 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555555554443 333444444444455555555555554444
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.55 E-value=0.26 Score=33.18 Aligned_cols=66 Identities=6% Similarity=-0.109 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCC------CcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCc
Q 038758 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKG------VRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNA 100 (354)
Q Consensus 33 y~~li~~~~~~~~~~~a~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 100 (354)
+-.|-..+.+.|+++.|...|+...+.- -.+....+..+..++.+.|+++.|...++...+. .|+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~ 79 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEH 79 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCC
Confidence 4467788889999999999999987642 1234556888889999999999999999999875 4443
No 230
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.42 E-value=3 Score=34.79 Aligned_cols=131 Identities=11% Similarity=0.045 Sum_probs=78.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHH----HHHHHHHhccCCCceehhhHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKD----VYDYMISIKFEGNACVKRPLL 107 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~----~~~~m~~~~~~~~~~~~~~li 107 (354)
+|.++..-|.+.+++++|.+++..--. .+.+.|+...+-+ +++-+.+.++++|......|+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 778888889999999999988655221 1223344433333 334445667777777777777
Q ss_pred HHHHhcCChh-HHHHHHHhh-----------ccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCC
Q 038758 108 DLFIKCGRME-ITSGLFEEM-----------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGG 175 (354)
Q Consensus 108 ~~~~~~g~~~-~a~~~~~~~-----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 175 (354)
..+.....-+ .=..+.+++ ..+......+...|.+.+++.+|+..|=.-..++...|..++..+...+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 7776665422 122333333 2234455677788888889999888885333333466655555554444
Q ss_pred Ch
Q 038758 176 FR 177 (354)
Q Consensus 176 ~~ 177 (354)
..
T Consensus 182 ~~ 183 (336)
T 3lpz_A 182 ES 183 (336)
T ss_dssp CG
T ss_pred CC
Confidence 43
No 231
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.41 E-value=0.21 Score=36.38 Aligned_cols=80 Identities=10% Similarity=-0.101 Sum_probs=47.8
Q ss_pred ChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccC---ChhhHHHHHHHHHHhccCC--CceehhhHHHHHHhcCChhHH
Q 038758 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK---DYRVGKDVYDYMISIKFEG--NACVKRPLLDLFIKCGRMEIT 119 (354)
Q Consensus 45 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a 119 (354)
.+..+.+-|.+..+.|. ++..+...+-.++++.+ +++++..+++...+.+ .| +...+-.|.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34455555555555553 56666666666666666 5667777777777654 23 233444555566677777777
Q ss_pred HHHHHhh
Q 038758 120 SGLFEEM 126 (354)
Q Consensus 120 ~~~~~~~ 126 (354)
.+.++.+
T Consensus 91 ~~y~~~l 97 (152)
T 1pc2_A 91 LKYVRGL 97 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666665
No 232
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.34 E-value=2.7 Score=34.76 Aligned_cols=128 Identities=12% Similarity=0.083 Sum_probs=73.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHH----HHHHHHHhccCCCceehhhHH
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKD----VYDYMISIKFEGNACVKRPLL 107 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~----~~~~m~~~~~~~~~~~~~~li 107 (354)
.|.++..-|.+.+++++|.+++..--. .+.+.|+...|-+ +.+-..+.+++++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 778888888888888888888755322 1223344433333 344444556666666666666
Q ss_pred HHHHhcCChh-HHHHHHHhh-----------ccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhC
Q 038758 108 DLFIKCGRME-ITSGLFEEM-----------DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALG 174 (354)
Q Consensus 108 ~~~~~~g~~~-~a~~~~~~~-----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 174 (354)
..+......+ .-.++.+++ ..+......+...|.+.|++.+|+..|-.-...|...+..++.-+...
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 6665543222 123333333 123445666777788888888888877633222455555555444443
No 233
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.92 E-value=4.5 Score=35.46 Aligned_cols=162 Identities=9% Similarity=0.090 Sum_probs=98.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC---cchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHH
Q 038758 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN---TISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICS 241 (354)
Q Consensus 165 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a 241 (354)
..|...+...|++.+|.+++.++..-..|..+. ...+...++.|...+++.+|..+...+...-..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~----------- 209 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFK----------- 209 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc-----------
Confidence 456778888899999999999886211222221 234566677788888888888887776432211
Q ss_pred HHHhcccCCCC--cchHHHHHHHHHhcCCHHHHHHHHHHHHHc-CcCCCHhhHHHHHH---Hhh---ccCcccCc-----
Q 038758 242 CSVFNQLSTRD--VVVWNSIISAFVRSGQVVDALDLLRDVIVA-NVKPNTVTIVSVLP---ACL---KLAALPQG----- 307 (354)
Q Consensus 242 ~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~---~~~---~~~~~~~~----- 307 (354)
....|+ ...|..++..+...+++.+|...|.+..+. ...-|...+..++. .|. ..++....
T Consensus 210 -----~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~ 284 (445)
T 4b4t_P 210 -----NPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKI 284 (445)
T ss_dssp -----SSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSH
T ss_pred -----cCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 000222 245666777888899999999888887543 12223222222111 111 11211110
Q ss_pred ----cccchhHHHHHHHHHHhc--CChhHHHHHhhcCCCCC
Q 038758 308 ----LGTGSFVWNALIDMYGRC--GAIQKSRKIFVLMPHKN 342 (354)
Q Consensus 308 ----~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~ 342 (354)
-.++...|..++.+|... .+++.+.+.|+....++
T Consensus 285 ~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~ 325 (445)
T 4b4t_P 285 QNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNED 325 (445)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTC
T ss_pred hhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhccc
Confidence 235678899999999764 46788888888776644
No 234
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=92.00 E-value=4 Score=32.67 Aligned_cols=179 Identities=12% Similarity=0.050 Sum_probs=89.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCcCCcc----cHHHHHHHHhccCChhhHHHHHHHHHHhccCCCcee--hhhHHH
Q 038758 35 SMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHF----VCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV--KRPLLD 108 (354)
Q Consensus 35 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~ 108 (354)
+.+...++.|+++.+..++ +.|..++.. .++ .+...+..|+.+ +++.+.+.|..++... -.+.+.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t-~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~ 77 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWT-PLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFL 77 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred hHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCc-HHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHH
Confidence 4555667778776554444 455444432 233 334445556654 4555566676655432 224455
Q ss_pred HHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCCCChh-------------hhHHHHHHH
Q 038758 109 LFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV-------------SWNAMLAGY 171 (354)
Q Consensus 109 ~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~li~~~ 171 (354)
..+..|+.+-+..+++.- ..+...+ +.+...+..|+.+-+..+++.-..++.. -.+ .+...
T Consensus 78 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t-~L~~A 155 (285)
T 1wdy_A 78 LAAIAGSVKLLKLFLSKGADVNECDFYGF-TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT-ALMDA 155 (285)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCBCTTCC-BHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCC-HHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCCccCcccC-CHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCc-HHHHH
Confidence 566677777666666542 1122222 3444556677777777777665443221 122 33334
Q ss_pred HhCCChhHHHHHHHHHHhhhcCCCCCc---chHHHHHHHhhhhcCccccchhhhHhhhhccc
Q 038758 172 ALGGFREEVTNLLDEMEMIQTDMQPNT---ISLSGVLAACAQVKGVKLGKAIHGYVLRHHIH 230 (354)
Q Consensus 172 ~~~~~~~~a~~~~~~m~~~~~~~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 230 (354)
+..|+.+-+..+++. .|..++. ...+.+.. .+..++......+.+.+.+.|..
T Consensus 156 ~~~~~~~~v~~Ll~~-----~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~ 211 (285)
T 1wdy_A 156 AEKGHVEVLKILLDE-----MGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGAD 211 (285)
T ss_dssp HHHTCHHHHHHHHHT-----SCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCC
T ss_pred HHcCCHHHHHHHHHh-----cCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCC
Confidence 456666544444432 2443332 22223322 33344444445666666666653
No 235
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.83 E-value=0.82 Score=30.35 Aligned_cols=62 Identities=10% Similarity=0.176 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHH
Q 038758 46 YEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLD 108 (354)
Q Consensus 46 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 108 (354)
.=+...-++.+...++.|+.....+.+++|.+.+++..|.++|+-++..- .+...+|..++.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 33566666777777788888888888899888888988988888877542 333445666543
No 236
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.82 E-value=2.1 Score=42.66 Aligned_cols=148 Identities=7% Similarity=-0.028 Sum_probs=88.1
Q ss_pred HHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcc---------------
Q 038758 135 SLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTI--------------- 199 (354)
Q Consensus 135 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~--------------- 199 (354)
.++..+.+.+..+.+.++..-.+. +...--.+..++...|++++|.+.|++. ..|+..+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~ka---a~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT---SLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTC---CCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHH---hhhhcccchhhhhhcccccccccc
Confidence 455666677777777776655543 3333335567788899999999999766 334332211
Q ss_pred --------hHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCC--cchHHHHHHHHHhcCCH
Q 038758 200 --------SLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRD--VVVWNSIISAFVRSGQV 269 (354)
Q Consensus 200 --------t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~li~~~~~~g~~ 269 (354)
=|..++..+.+.+..+.+.++-....+.... ..++ ...|..+.+++...|++
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~------------------~~~~~~~~l~~~iFk~~L~l~~y 954 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKET------------------DDEDLSIAITHETLKTACAAGKF 954 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCS------------------CCHHHHHHHHHHHHHHHHHHCCS
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccC------------------CChhhHHHHHHHHHHHHHhhCCH
Confidence 1334444444444444444433332222110 0111 12588889999999999
Q ss_pred HHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccC
Q 038758 270 VDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ 306 (354)
Q Consensus 270 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 306 (354)
++|...+-.+.+...+ ...+..++..+|..|..+.
T Consensus 955 e~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 955 DAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp GGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 9999998888766543 3456677777777665433
No 237
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=89.78 E-value=1.1 Score=32.48 Aligned_cols=88 Identities=9% Similarity=0.034 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhc---CccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcc
Q 038758 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVK---GVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVV 254 (354)
Q Consensus 178 ~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 254 (354)
..+.+-|.+.. ..|. ++..+--.+-.++++.+ +.+++..+++.+.+...+ ..+..
T Consensus 15 ~~~~~~y~~e~--~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p-------------------~~~rd 72 (152)
T 1pc2_A 15 LKFEKKFQSEK--AAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSK-------------------EEQRD 72 (152)
T ss_dssp HHHHHHHHHHH--HTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH-------------------HHHHH
T ss_pred HHHHHHHHHHH--ccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc-------------------cchHH
Confidence 34455555544 3333 45555555555666655 555777777766665410 01223
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHh
Q 038758 255 VWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTV 289 (354)
Q Consensus 255 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 289 (354)
.+-.+--++.+.|++++|.+.++.+.+. .|+..
T Consensus 73 ~lY~LAv~~~kl~~Y~~A~~y~~~lL~i--eP~n~ 105 (152)
T 1pc2_A 73 YVFYLAVGNYRLKEYEKALKYVRGLLQT--EPQNN 105 (152)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCH
Confidence 3334556678889999999999998854 67543
No 238
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=89.64 E-value=5 Score=32.72 Aligned_cols=123 Identities=11% Similarity=0.035 Sum_probs=80.8
Q ss_pred CchhHHHHHhccCCCCCh--hhhHHHHH-HHHhC--CCh------hHHHHHHHHHHhhhcCCCCC---cchHHHHHHHhh
Q 038758 144 RYLKVSHCKFSKIKQKDL--VSWNAMLA-GYALG--GFR------EEVTNLLDEMEMIQTDMQPN---TISLSGVLAACA 209 (354)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~--~~~~~li~-~~~~~--~~~------~~a~~~~~~m~~~~~~~~p~---~~t~~~ll~~~~ 209 (354)
++.++..+.+.+....++ ..|..++. .+... |++ ..|...+++.. .+.|+ ...|..+...|.
T Consensus 135 ~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAl----eLDP~~~~GsA~~~LG~lY~ 210 (301)
T 3u64_A 135 GDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERAC----DLWPSYQEGAVWNVLTKFYA 210 (301)
T ss_dssp SCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHH----HHCTTHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHH----HhCCCcccCHHHHHHHHHHH
Confidence 444455555666654333 34555544 33432 433 34444454444 34565 557788888888
Q ss_pred hh-----cCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhc-CCHHHHHHHHHHHHHcC
Q 038758 210 QV-----KGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRS-GQVVDALDLLRDVIVAN 283 (354)
Q Consensus 210 ~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g 283 (354)
+. |+.++|++.|++.++.+. ..+..++......++.. |+.+++.+.+++.....
T Consensus 211 ~vPp~~gGd~ekA~~~ferAL~LnP--------------------~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 211 AAPESFGGGMEKAHTAFEHLTRYCS--------------------AHDPDHHITYADALCIPLNNRAGFDEALDRALAID 270 (301)
T ss_dssp HSCTTTTCCHHHHHHHHHHHHHHCC--------------------TTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred hCCCccCCCHHHHHHHHHHHHHhCC--------------------CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 74 888999999888888753 23577888888888885 99999999999999876
Q ss_pred cC--CCHhh
Q 038758 284 VK--PNTVT 290 (354)
Q Consensus 284 ~~--p~~~t 290 (354)
.. |+...
T Consensus 271 p~~~P~~~l 279 (301)
T 3u64_A 271 PESVPHNKL 279 (301)
T ss_dssp GGGCSSCHH
T ss_pred CCCCCChhH
Confidence 55 55443
No 239
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.23 E-value=3.4 Score=27.31 Aligned_cols=50 Identities=14% Similarity=0.035 Sum_probs=41.6
Q ss_pred HHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 137 IDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 137 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
+..+...|++++|..+.+....||...|-++-. .+.|..+++...+..+.
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356788899999999999999999999987765 47788888888887885
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.63 E-value=2.2 Score=40.04 Aligned_cols=119 Identities=8% Similarity=-0.036 Sum_probs=74.6
Q ss_pred HHHHHHHhccCC-hhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCC-hhHHHHHHHhh-----------ccc------
Q 038758 69 PKVYKACSELKD-YRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGR-MEITSGLFEEM-----------DQD------ 129 (354)
Q Consensus 69 ~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~-----------~~~------ 129 (354)
..++..+...++ ++.|..+++.+.+.....+......++..+.+.++ --+|.++..+. ++.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 345555555666 58899999998876422222222334443333331 22233333322 111
Q ss_pred -----cchhhHHHHHHHhcCchhHHHHHhccCCC--CC-hhhhHHHHHHHHhCCChhHHHHHHHHH
Q 038758 130 -----FLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--KD-LVSWNAMLAGYALGGFREEVTNLLDEM 187 (354)
Q Consensus 130 -----~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m 187 (354)
......-.+.+...|+++-|.++-++... |+ -.+|..|...|.+.|+++.|+-.++.+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11122224567788999999999988764 54 678999999999999999999999988
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.09 E-value=1.2 Score=38.20 Aligned_cols=70 Identities=6% Similarity=-0.040 Sum_probs=38.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHH-----hccCCCcee
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMIS-----IKFEGNACV 102 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~ 102 (354)
+...++..+...|+++++...+..+.... +.+...|..+|.++.+.|+..+|.+.|+...+ .|+.|...+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 33444555555666666666665555432 33445566666666666666666666655543 255555443
No 242
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=88.05 E-value=2.2 Score=34.83 Aligned_cols=66 Identities=15% Similarity=0.057 Sum_probs=50.3
Q ss_pred hHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhcc-CChhhHHHHHHHHHHhccC
Q 038758 32 NWTSMMGMYNV-----LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL-KDYRVGKDVYDYMISIKFE 97 (354)
Q Consensus 32 ~y~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~ 97 (354)
.|..|...|.+ .|+.++|.+.|++..+.+..-+..++......+++. |+.+.+.+.++........
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 67777777887 488999999999888864322467777777777774 8888888888888876544
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.53 E-value=11 Score=33.00 Aligned_cols=154 Identities=12% Similarity=0.117 Sum_probs=88.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC-CCcCCcccHHHHHHHH----hccCChhhHHHHHHHHHHh-ccCCC------
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-GVRPDHFVCPKVYKAC----SELKDYRVGKDVYDYMISI-KFEGN------ 99 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~m~~~-~~~~~------ 99 (354)
....++..|...|+++...+.+.-+... |..+.. ...+++.+ ......+...+ ...+... .+...
T Consensus 58 ~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~~~~d~~~~-~~~i~~l~~vte~kiflE~ 134 (445)
T 4b4t_P 58 VLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSSKSLDLNTR-ISVIETIRVVTENKIFVEV 134 (445)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHHCTTHHHHH-HHHHHCCSSSSSCCCCCCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHHhccchHHHH
Confidence 3456777788888888877776665433 322222 22232222 12222221111 1111111 11111
Q ss_pred --ceehhhHHHHHHhcCChhHHHHHHHhhcc----------ccchhhHHHHHHHhcCchhHHHHHhccCCC--------C
Q 038758 100 --ACVKRPLLDLFIKCGRMEITSGLFEEMDQ----------DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ--------K 159 (354)
Q Consensus 100 --~~~~~~li~~~~~~g~~~~a~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~ 159 (354)
......|...|...|++.+|.+++.++.. -...+...+..|...+++..|..++.+... |
T Consensus 135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~ 214 (445)
T 4b4t_P 135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE 214 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence 11224577888889999999999988821 234556677888888999888888776531 1
Q ss_pred C--hhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 160 D--LVSWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 160 ~--~~~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
+ ..-|...+..+...+++.+|.+.|.+..
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1 1235566677777888888888877774
No 244
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=87.30 E-value=3.7 Score=29.72 Aligned_cols=93 Identities=11% Similarity=0.215 Sum_probs=58.5
Q ss_pred hHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCcCCcc-cHHHHHHH------HhccCChhhHHHHHHHHHHhccCC
Q 038758 32 NWTSMMGMYNVLGYY------EEIVNLFYLMIDKGVRPDHF-VCPKVYKA------CSELKDYRVGKDVYDYMISIKFEG 98 (354)
Q Consensus 32 ~y~~li~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~-~~~~ll~~------~~~~~~~~~a~~~~~~m~~~~~~~ 98 (354)
+|-..+...-+.|+. ++..++|++.... ++|+.. .|..-+.. +...+++++|.++|+.+.+.+ +-
T Consensus 15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h-Kk 92 (161)
T 4h7y_A 15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC-KK 92 (161)
T ss_dssp HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-HH
Confidence 566666666777888 8888999988774 555432 12222211 123478888889998887652 22
Q ss_pred CceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758 99 NACVKRPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 99 ~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
=..+|-.....=.+.|+++.|.+++.+-
T Consensus 93 FAKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 93 FAFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2445555555556677777777776653
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.04 E-value=1.3 Score=38.09 Aligned_cols=42 Identities=24% Similarity=0.380 Sum_probs=36.2
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCcCCCHhhH
Q 038758 250 TRDVVVWNSIISAFVRSGQVVDALDLLRDVIV-----ANVKPNTVTI 291 (354)
Q Consensus 250 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~ 291 (354)
+-+...|-.+|.++.+.|+..+|++.|++..+ .|+.|+..+-
T Consensus 202 P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 202 PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 44778999999999999999999999998754 4999998763
No 246
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.40 E-value=5.4 Score=26.43 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=39.9
Q ss_pred HHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 137 IDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 137 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
+..+...|++++|..+.+....||...|-+|-.. +.|..+++...+..+.
T Consensus 47 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 47 LSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 3567788888888889998888999998777654 6688888888887774
No 247
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=86.21 E-value=1.9 Score=30.13 Aligned_cols=82 Identities=6% Similarity=-0.147 Sum_probs=44.1
Q ss_pred cCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChh---hHHHHHHHHHHhccCC--CceehhhHHHHHHhcCChh
Q 038758 43 LGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYR---VGKDVYDYMISIKFEG--NACVKRPLLDLFIKCGRME 117 (354)
Q Consensus 43 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~ 117 (354)
...+..+.+-|.+....|. |+..+--.+..++++.++.. ++..+++.+.+.+ .| .....-.|.-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 3444455555555544442 55555555555666555433 3666666666543 22 2223334555666667777
Q ss_pred HHHHHHHhh
Q 038758 118 ITSGLFEEM 126 (354)
Q Consensus 118 ~a~~~~~~~ 126 (354)
.|.+.++.+
T Consensus 92 ~A~~~~~~l 100 (126)
T 1nzn_A 92 KALKYVRGL 100 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666655
No 248
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=86.00 E-value=2.3 Score=29.93 Aligned_cols=59 Identities=10% Similarity=0.216 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHH
Q 038758 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL 107 (354)
Q Consensus 48 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 107 (354)
+...-++.+...++.|+.......+++|.+.+|+..|.++|+-.+..- .+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 344444444455566677777777777777777777777776655432 33344455443
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.86 E-value=29 Score=34.64 Aligned_cols=123 Identities=6% Similarity=-0.079 Sum_probs=86.6
Q ss_pred hhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCCC-----------------------
Q 038758 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK----------------------- 159 (354)
Q Consensus 103 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----------------------- 159 (354)
...++..+.+.+..+-+.++..-.+.+...--.+..+|...|++++|...|++.-..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~ 894 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHH 894 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccc
Confidence 345666777888888888777666666555555667888999999999999776420
Q ss_pred ---ChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcC-CCCCc--chHHHHHHHhhhhcCccccchhhhHhhh
Q 038758 160 ---DLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTD-MQPNT--ISLSGVLAACAQVKGVKLGKAIHGYVLR 226 (354)
Q Consensus 160 ---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 226 (354)
-..-|..++..|-+.+.++.+.++-+...+ ..+ -.++. ..|..+.+++...|++++|...+-.+..
T Consensus 895 ~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~-~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 895 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADA-SKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHH-HCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 011266788888899999999888776642 221 12221 2578889999999999999887765544
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.74 E-value=8.3 Score=28.36 Aligned_cols=133 Identities=13% Similarity=0.051 Sum_probs=67.4
Q ss_pred HHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CcCCc-------ccHHHHHHHHhccCCh
Q 038758 10 HLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKG-VRPDH-------FVCPKVYKACSELKDY 81 (354)
Q Consensus 10 ~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-------~~~~~ll~~~~~~~~~ 81 (354)
.--..|+.|....|+ +-.-++.+...|.++.|.-+...+.... ..|+. .++..+.+++...|++
T Consensus 8 ~~~~~~~~~~~~~~~--------l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~ey 79 (167)
T 3ffl_A 8 HHHSSGLVPRGSHMN--------VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEY 79 (167)
T ss_dssp -------------CC--------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccCCCCCccHHH--------HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHH
Confidence 334567777766543 3345777888999999998888865542 23443 2456777888999999
Q ss_pred hhHHHHHHHHHHhc--cCCCceehhhHHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCC
Q 038758 82 RVGKDVYDYMISIK--FEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ 158 (354)
Q Consensus 82 ~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 158 (354)
.+|...|+...+.. +..+..+...+- .....+.. ++ ...+...--.+..+|.+.++.++|+.+++.++.
T Consensus 80 rrA~~~y~qALq~~k~l~k~~s~~~~~~---~~ss~p~s----~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 80 RNAVSKYTMALQQKKALSKTSKVRPSTG---NSASTPQS----QC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHHHHCC---------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccccc---ccCCCccc----cc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 99999999976542 111111111110 00000000 00 011223333456677777888888888777753
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.33 E-value=4.5 Score=26.92 Aligned_cols=49 Identities=16% Similarity=0.223 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhc
Q 038758 178 EEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHH 228 (354)
Q Consensus 178 ~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 228 (354)
=++.+-++.+. ...+.|+.....+.|++|.+.+++..|.++++-++...
T Consensus 27 ~e~rrglN~l~--~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~ 75 (109)
T 1v54_E 27 WELRKGMNTLV--GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 75 (109)
T ss_dssp HHHHHHHHHHT--TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh--ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 35556666666 67777777777778888877777777777777666543
No 252
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=82.89 E-value=19 Score=29.73 Aligned_cols=26 Identities=8% Similarity=0.193 Sum_probs=20.7
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhh
Q 038758 311 GSFVWNALIDMYGRCGAIQKSRKIFV 336 (354)
Q Consensus 311 ~~~~~~~li~~~~~~g~~~~A~~~~~ 336 (354)
++.....+...|.+.|++.+|+..|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 55667778888888888888888775
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.81 E-value=5.9 Score=29.13 Aligned_cols=121 Identities=7% Similarity=-0.023 Sum_probs=65.7
Q ss_pred CCCcCCcc--cHHHHHHHHhccCChhhHHHHHHHHHHhc-cCCCc-------eehhhHHHHHHhcCChhHHHHHHHhh--
Q 038758 59 KGVRPDHF--VCPKVYKACSELKDYRVGKDVYDYMISIK-FEGNA-------CVKRPLLDLFIKCGRMEITSGLFEEM-- 126 (354)
Q Consensus 59 ~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~~-- 126 (354)
.|+.|... .+-.-++.+...+.++.|+-+.+.+.... ..|+. .++..+.+++...|++..|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 35555443 34455777888889999988888876542 34443 25566778888899999999888874
Q ss_pred -----ccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 127 -----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 127 -----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
.....+.+.+ ........ -++. ..+...---+-.+|.+.+++++|+.+++.+.
T Consensus 92 ~~k~l~k~~s~~~~~----~~~ss~p~---s~~~--~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 92 QKKALSKTSKVRPST----GNSASTPQ---SQCL--PSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHCC---------------------------CC--CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHhcCCCccccc----cccCCCcc---cccc--cchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 0000001000 00000000 0000 1122333347788999999999999988664
No 254
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=81.38 E-value=13 Score=26.91 Aligned_cols=113 Identities=10% Similarity=0.135 Sum_probs=73.0
Q ss_pred CChhhhHHHHHHHHhCCCh------hHHHHHHHHHHhhhcCCCCCcch----HHHHH-H--HhhhhcCccccchhhhHhh
Q 038758 159 KDLVSWNAMLAGYALGGFR------EEVTNLLDEMEMIQTDMQPNTIS----LSGVL-A--ACAQVKGVKLGKAIHGYVL 225 (354)
Q Consensus 159 ~~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~~~p~~~t----~~~ll-~--~~~~~~~~~~a~~~~~~~~ 225 (354)
.|..+|-..+...-+.|++ ++..++|+... ..++|+... |.-+. . .+...+|+++|+++|+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAi---a~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAI---EALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHH---HHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHH---HcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4566777777777777988 88888888774 466665321 21111 1 1234478999999998887
Q ss_pred hhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHH
Q 038758 226 RHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLP 296 (354)
Q Consensus 226 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 296 (354)
+.+ +.=...|-..-.-=.++|+..+|.+++.+....+.+|.. .+...|+
T Consensus 88 ~~h---------------------KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~-~le~a~~ 136 (161)
T 4h7y_A 88 ANC---------------------KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE-MLEIALR 136 (161)
T ss_dssp HHC---------------------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH-HHHHHHH
T ss_pred HHh---------------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH-HHHHHHH
Confidence 753 222444544444556799999999999999876655543 3333333
No 255
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=80.85 E-value=15 Score=27.35 Aligned_cols=154 Identities=7% Similarity=-0.065 Sum_probs=83.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCcee--hhhHHHHHHhcCC
Q 038758 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV--KRPLLDLFIKCGR 115 (354)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~ 115 (354)
...+..|+.+.+..++..-...--..|...++.|.. .+..|+.+ +++.+.+.|..++... -.+.+...+..|+
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 84 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNI-AVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGR 84 (201)
T ss_dssp HHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHH-HHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHH-HHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 344567888777777653221101223333444444 44556654 5555566676665443 2344556667788
Q ss_pred hhHHHHHHHhhcc-----ccchhhHHHHHHHhcCchhHHHHHhccC-CC---CChhhhHHHHHHHHhCCChhHHHHHHHH
Q 038758 116 MEITSGLFEEMDQ-----DFLVNNSLIDFYAKCRYLKVSHCKFSKI-KQ---KDLVSWNAMLAGYALGGFREEVTNLLDE 186 (354)
Q Consensus 116 ~~~a~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~-~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ 186 (354)
.+-+..+++.-.. +.... +.+...++.|+.+-+..+++.- .. +|..-.+.+..+.........-.++.+.
T Consensus 85 ~~~~~~Ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~ 163 (201)
T 3hra_A 85 TEILAYMLKHATPDLNKHNRYGG-NALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163 (201)
T ss_dssp HHHHHHHHHHSCCCTTCCCTTSC-CSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred HHHHHHHHhccCcccccccCCCC-cHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Confidence 8888777755421 22222 2345556678888777777665 22 3444445555554433323334566666
Q ss_pred HHhhhcCCCCCcc
Q 038758 187 MEMIQTDMQPNTI 199 (354)
Q Consensus 187 m~~~~~~~~p~~~ 199 (354)
+. +.|..|+..
T Consensus 164 Ll--~~ga~~~~~ 174 (201)
T 3hra_A 164 LM--ENGADQSIK 174 (201)
T ss_dssp HH--HTTCCTTCC
T ss_pred HH--HCCCCCCcc
Confidence 66 667666643
No 256
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=80.72 E-value=3.9 Score=34.52 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=23.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMID 58 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~ 58 (354)
....+|.-|...++.++|...++++..
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~ 82 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNL 82 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCC
Confidence 567889999999999999999998753
No 257
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=80.65 E-value=7 Score=32.20 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=37.2
Q ss_pred hHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcC--ccccchhhhHhhhhccc
Q 038758 164 WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKG--VKLGKAIHGYVLRHHIH 230 (354)
Q Consensus 164 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~ 230 (354)
.+.++.-|...|+.++|.+.++++. .....+ ......+..++-+.++ .+....++..+.+.++-
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~--~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELE--VPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC--CGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC--CCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 4567777777788888888888775 332322 2334455555554322 34556666666655543
No 258
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=79.92 E-value=5.3 Score=27.86 Aligned_cols=90 Identities=10% Similarity=-0.053 Sum_probs=55.1
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhH---HHHHHHhhccccchhhHHHHHHHhcCchh
Q 038758 71 VYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEI---TSGLFEEMDQDFLVNNSLIDFYAKCRYLK 147 (354)
Q Consensus 71 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~~~~li~~~~~~~~~~ 147 (354)
++..-.....+..+.+-|......| .++..+-..+..++.+...... +..+++++
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l--------------------- 64 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEEL--------------------- 64 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHH---------------------
T ss_pred HHhccCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH---------------------
Confidence 3333444445566667776666655 4777888888888888877666 55554443
Q ss_pred HHHHHhccCCCC--ChhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 148 VSHCKFSKIKQK--DLVSWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 148 ~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
+..- .| .....-.+.-++.+.|++++|.+.++.+.
T Consensus 65 -----~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 65 -----LPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp -----TTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----HhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1110 01 11223345667778888888888888776
No 259
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=78.51 E-value=12 Score=24.78 Aligned_cols=54 Identities=9% Similarity=-0.010 Sum_probs=38.1
Q ss_pred chhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHH
Q 038758 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292 (354)
Q Consensus 236 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 292 (354)
|++++|..+.+....||...|-+|-. .+.|..+++..-+.++..+| .|....|.
T Consensus 53 G~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 53 GRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp TCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred hhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 45555555555555788888877655 57888889988888888776 56655554
No 260
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.56 E-value=13 Score=24.69 Aligned_cols=55 Identities=20% Similarity=0.184 Sum_probs=39.4
Q ss_pred cchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHH
Q 038758 235 CGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIV 292 (354)
Q Consensus 235 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 292 (354)
.|++++|..+.+....||...|-+|-. .+.|..+++..-+.++..+| .|....|.
T Consensus 53 rG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 53 RGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp TTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred chhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 456666666666666889988877655 46788888888888887766 56555544
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=77.35 E-value=7.9 Score=27.32 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhh
Q 038758 179 EVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRH 227 (354)
Q Consensus 179 ~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 227 (354)
+..+-++.+. ..++.|+.......|++|.+.+|+..|.++++-++..
T Consensus 71 ElrrglN~l~--~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 71 ELRKGMNTLV--GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHT--TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4555555555 6667777777777777777777777777777666554
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.94 E-value=14 Score=32.13 Aligned_cols=30 Identities=23% Similarity=0.100 Sum_probs=19.0
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038758 252 DVVVWNSIISAFVRSGQVVDALDLLRDVIVAN 283 (354)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 283 (354)
...+...|-..+. =..+++++.+.+|...|
T Consensus 346 s~I~l~~mA~~l~--~s~~~~E~~L~~lI~~g 375 (429)
T 4b4t_R 346 KTLSLKSMASAFG--VSVAFLDNDLGKFIPNK 375 (429)
T ss_dssp SEEEHHHHHHHHT--SCHHHHHHHHHHHHHHT
T ss_pred ceeeHHHHHHHhC--cCHHHHHHHHHHHHHcC
Confidence 4455555555543 24677888888887665
No 263
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=75.50 E-value=25 Score=26.89 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=5.1
Q ss_pred HHhcCChhHHHHH
Q 038758 110 FIKCGRMEITSGL 122 (354)
Q Consensus 110 ~~~~g~~~~a~~~ 122 (354)
.+..|+.+-+..+
T Consensus 116 A~~~~~~~~~~~L 128 (240)
T 3eu9_A 116 AAQFGHTSIVAYL 128 (240)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHHcCHHHHHHHH
Confidence 3344444433333
No 264
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=74.94 E-value=35 Score=28.39 Aligned_cols=81 Identities=12% Similarity=0.137 Sum_probs=52.9
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhH
Q 038758 251 RDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQK 330 (354)
Q Consensus 251 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 330 (354)
-|......+-..|.+.+++.+|..-| + .|-.++...|..++.-+...+.. -.++..+-..++ -|...|++..
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~--i--lg~~~s~~~~a~mL~ew~~~~~~---~e~dlfiaRaVL-~yL~l~n~~~ 205 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL--V--LGTKESPEVLARMEYEWYKQDES---HTAPLYCARAVL-PYLLVANVRA 205 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH--T--TSCTTHHHHHHHHHHHHHHTSCG---GGHHHHHHHHHH-HHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH--H--hcCCchHHHHHHHHHHHHHhcCC---ccHHHHHHHHHH-HHHHhCCHHH
Confidence 35566677788899999999998877 2 35556657887777777665541 233444444444 4555677888
Q ss_pred HHHHhhcCC
Q 038758 331 SRKIFVLMP 339 (354)
Q Consensus 331 A~~~~~~m~ 339 (354)
|..+++...
T Consensus 206 A~~~~~~f~ 214 (336)
T 3lpz_A 206 ANTAYRIFT 214 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877665543
No 265
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=74.37 E-value=27 Score=26.79 Aligned_cols=86 Identities=12% Similarity=0.044 Sum_probs=51.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCcCCccc---HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceeh--hhHHHHH
Q 038758 36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFV---CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK--RPLLDLF 110 (354)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~li~~~ 110 (354)
.+...++.|+.+.+..+++.+.+.|..++... .+.| ...+..|+.+ +++.+.+.|..++.... .+.+...
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A 86 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPL-HLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLA 86 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHH-HHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHH-HHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHH
Confidence 34555677888888888887777765554432 3333 3444556554 55555666766554332 2445555
Q ss_pred HhcCChhHHHHHHHhh
Q 038758 111 IKCGRMEITSGLFEEM 126 (354)
Q Consensus 111 ~~~g~~~~a~~~~~~~ 126 (354)
+..|+.+-+..+++..
T Consensus 87 ~~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 87 CEHRSPTCLRALLDSA 102 (241)
T ss_dssp HHTTCHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHcC
Confidence 6677777666666553
No 266
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=73.47 E-value=34 Score=27.46 Aligned_cols=75 Identities=11% Similarity=-0.073 Sum_probs=33.5
Q ss_pred hccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHH
Q 038758 76 SELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHC 151 (354)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~ 151 (354)
+..|+.+.+ +.+.+.|..++...-.+.+...+..|+.+-+..+++.= ..+...++ -+...+..|+.+-+..
T Consensus 39 ~~~g~~~~v----~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t-~L~~A~~~g~~~~v~~ 113 (285)
T 3kea_A 39 IADNNVRLV----CTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNT-ALYYAVDSGNMQTVKL 113 (285)
T ss_dssp HHTTCHHHH----HHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHH----HHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCc-HHHHHHHcCCHHHHHH
Confidence 344554433 33334454444433334455555566665555554432 11111222 2333445556655555
Q ss_pred Hhcc
Q 038758 152 KFSK 155 (354)
Q Consensus 152 ~~~~ 155 (354)
+++.
T Consensus 114 Ll~~ 117 (285)
T 3kea_A 114 FVKK 117 (285)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5554
No 267
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=72.95 E-value=29 Score=26.49 Aligned_cols=108 Identities=16% Similarity=0.066 Sum_probs=52.2
Q ss_pred HHhcCChhHHHHHHHHHHhCCCcCCccc--HHHHHHHHhccCChhhHHHHHHHHHHhccCCCcee---hhhHHHHHHhcC
Q 038758 40 YNVLGYYEEIVNLFYLMIDKGVRPDHFV--CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV---KRPLLDLFIKCG 114 (354)
Q Consensus 40 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g 114 (354)
.++.|+++.+..+ .+.|..++... -.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+..|
T Consensus 16 A~~~g~~~~~~~L----l~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~ 87 (240)
T 3eu9_A 16 ATQYGIYERCREL----VEAGYDVRQPDKENVTLLHWAAINNRID----LVKYYISKGAIVDQLGGDLNSTPLHWATRQG 87 (240)
T ss_dssp HHHTTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTTBCHHHHHHHHT
T ss_pred HHHcCChHHHHHH----HHcCCCcCCCCCCCCCHHHHHHHhCCHH----HHHHHHHcCCcchhhcCCcCCChhHHHHHcC
Confidence 4556766554444 44554443322 112344455666654 4444455554443222 234555566677
Q ss_pred ChhHHHHHHHhh-cc---ccchhhHHHHHHHhcCchhHHHHHhccC
Q 038758 115 RMEITSGLFEEM-DQ---DFLVNNSLIDFYAKCRYLKVSHCKFSKI 156 (354)
Q Consensus 115 ~~~~a~~~~~~~-~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~ 156 (354)
+.+-+..+++.- .+ +.... ..+...+..|+.+-+..+++.-
T Consensus 88 ~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~~~~Ll~~~ 132 (240)
T 3eu9_A 88 HLSMVVQLMKYGADPSLIDGEGC-SCIHLAAQFGHTSIVAYLIAKG 132 (240)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHTT
T ss_pred CHHHHHHHHHcCCCCcccCCCCC-CHHHHHHHcCHHHHHHHHHhcC
Confidence 776665555431 11 11122 3344445556666666665543
No 268
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=72.54 E-value=28 Score=26.21 Aligned_cols=133 Identities=10% Similarity=-0.027 Sum_probs=66.9
Q ss_pred HHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCc
Q 038758 135 SLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGV 214 (354)
Q Consensus 135 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~ 214 (354)
..+.++.+.++.+....+.+.+..++...-...+.++.+.++.+.. ..+..+. . .|+...-...+.++.+.++.
T Consensus 69 ~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l--~---d~~~~vr~~a~~aL~~~~~~ 142 (211)
T 3ltm_A 69 AAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAV-EPLIKAL--K---DEDWFVRIAAAFALGEIGDE 142 (211)
T ss_dssp HHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGH-HHHHHHT--T---CSSHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHH-HHHHHHH--h---CCCHHHHHHHHHHHHHcCCH
Confidence 3444444445444444444445556666666667777777765433 3333342 2 34555555556666666553
Q ss_pred cccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHH
Q 038758 215 KLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSV 294 (354)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 294 (354)
+....+. .+.+ .++...-...+.++.+.+. .++...+.++.+. ++...-...
T Consensus 143 ~~~~~L~-~~l~-----------------------d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A 194 (211)
T 3ltm_A 143 RAVEPLI-KALK-----------------------DEDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVA 194 (211)
T ss_dssp GGHHHHH-HHTT-----------------------CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHH
T ss_pred HHHHHHH-HHHc-----------------------CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHH
Confidence 3222221 1111 4455555566677777765 4555555555542 344444444
Q ss_pred HHHhhcc
Q 038758 295 LPACLKL 301 (354)
Q Consensus 295 i~~~~~~ 301 (354)
+.++.+.
T Consensus 195 ~~aL~~~ 201 (211)
T 3ltm_A 195 VNYLETH 201 (211)
T ss_dssp HHHHHC-
T ss_pred HHHHHhc
Confidence 4444433
No 269
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=71.66 E-value=34 Score=26.80 Aligned_cols=90 Identities=11% Similarity=0.088 Sum_probs=59.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC--CCcC----CcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHH
Q 038758 34 TSMMGMYNVLGYYEEIVNLFYLMIDK--GVRP----DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLL 107 (354)
Q Consensus 34 ~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 107 (354)
---+..+....++++|.+++++..+. ++++ +.......+..-...+.-.-+..+.+.+.. .++.......+
T Consensus 22 ~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v 98 (235)
T 2d2s_A 22 VEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGT 98 (235)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHH
T ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHH
Confidence 34577888999999999999987654 2332 123334445444454445555555555532 44555667778
Q ss_pred HHHHhcCChhHHHHHHHhh
Q 038758 108 DLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~~ 126 (354)
..+.+.|+.++|.++|-+.
T Consensus 99 ~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 99 ENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHHH
Confidence 8999999999999999876
No 270
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.18 E-value=51 Score=28.55 Aligned_cols=61 Identities=11% Similarity=0.002 Sum_probs=34.1
Q ss_pred hhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCC--cchHHHHHHHhhhhcCccccchhhhHhh
Q 038758 163 SWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPN--TISLSGVLAACAQVKGVKLGKAIHGYVL 225 (354)
Q Consensus 163 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 225 (354)
+...+...|.+.|+++.|.+.|.+++ .....+. ...+-.+++.+...+++..+......+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~--~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSL--SKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHH--HHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH--HhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44556666666677777777776665 3222222 2344455555666666666665555443
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=70.60 E-value=7.6 Score=31.14 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=18.3
Q ss_pred hhHHHHHHHH--hCCChhHHHHHHHHHH
Q 038758 163 SWNAMLAGYA--LGGFREEVTNLLDEME 188 (354)
Q Consensus 163 ~~~~li~~~~--~~~~~~~a~~~~~~m~ 188 (354)
-...++.+.. ..|+.++|.++-.+..
T Consensus 100 w~~~ll~Al~~~~~G~~~~A~~lr~~A~ 127 (273)
T 1zbp_A 100 LTKSLVSFNLSMVSQDYEQVSELALQIE 127 (273)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 3445555544 4599999999988885
No 272
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.64 E-value=50 Score=29.43 Aligned_cols=177 Identities=12% Similarity=0.048 Sum_probs=90.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHH-------HHHHHhccCChhhHHHHHHHHHHhccCCCceeh-
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPK-------VYKACSELKDYRVGKDVYDYMISIKFEGNACVK- 103 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-------ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~- 103 (354)
.+|.+++.|...+.++.|..+..+..- +.+...-+. +.....-.+++.+|.+.+....+.- +++....
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~f---P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka-p~~~~a~g 308 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEY---PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA-PHNSKSLG 308 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCS---CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC-SCSSSCSH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcC---CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-Ccchhhhh
Confidence 678999999999999999999998741 212122222 2344557789999999988877543 3332221
Q ss_pred --------hhHHHHHHhcCChhHHHHHHHhh--ccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHh
Q 038758 104 --------RPLLDLFIKCGRMEITSGLFEEM--DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYAL 173 (354)
Q Consensus 104 --------~~li~~~~~~g~~~~a~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 173 (354)
-.++..+ .|++.+ ..+|.+- +.....|..|..++ +.|++++-...++.-. ..|.+
T Consensus 309 fr~~a~K~lI~V~LL--lG~iP~-r~lf~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~-----------~~F~~ 373 (523)
T 4b4t_S 309 FLQQSNKLHCCIQLL--MGDIPE-LSFFHQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYK-----------QLLLK 373 (523)
T ss_dssp HHHHHHHHHHHHHHH--HTCCCC-HHHHTTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTH-----------HHHHH
T ss_pred HHHHHHHHHHhHHhh--cCCCCC-hHHhhchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhc-----------ceecc
Confidence 1222222 466554 2333321 22233455566664 5566555444443321 12333
Q ss_pred CCChhHHHHHHHHHH----hhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhcc
Q 038758 174 GGFREEVTNLLDEME----MIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHI 229 (354)
Q Consensus 174 ~~~~~~a~~~~~~m~----~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 229 (354)
.|-+.-+.++-.... . .-...-+..++.-+...+ ...+.++|+.+...+...|.
T Consensus 374 Dgty~LI~rLr~~vir~~ir-kis~~YsrIsL~dIa~kL-~L~s~eeaE~iVAkmI~dG~ 431 (523)
T 4b4t_S 374 DDTYQLCVRLRSNVIKTGIR-IISLTYKKISLRDICLKL-NLDSEQTVEYMVSRAIRDGV 431 (523)
T ss_dssp TTCTHHHHHHHHHHHHHHHH-HSCCCSSEECHHHHHHHH-HHHHSSCHHHHHHHHHHHTS
T ss_pred CChhHHHHHHHHHHHHHHHH-HHHHHHhcccHHHHHHHh-CCCCHHHHHHHHHHHHHcCC
Confidence 344433333322222 0 222223333343332222 22345667777777776664
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=68.85 E-value=32 Score=26.17 Aligned_cols=54 Identities=6% Similarity=0.141 Sum_probs=39.3
Q ss_pred cCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCCCC
Q 038758 266 SGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPHKN 342 (354)
Q Consensus 266 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 342 (354)
.+...++.++|..|...|+--....| |......+...|++++|.++|+.-.+.+
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~Alf-----------------------Ye~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLF-----------------------YEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHH-----------------------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHH-----------------------HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34467888888888887765554443 7778888888888888888887655433
No 274
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=67.74 E-value=46 Score=26.66 Aligned_cols=142 Identities=11% Similarity=0.028 Sum_probs=81.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceeh--hhHHHHHHhcC
Q 038758 37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK--RPLLDLFIKCG 114 (354)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g 114 (354)
+...++.|+.+-+..+ .+.|..++...-.+.+...+..|+.+- .+.+.+.|..++.... .+-+...+..|
T Consensus 35 L~~A~~~g~~~~v~~L----l~~g~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g 106 (285)
T 3kea_A 35 SYYAIADNNVRLVCTL----LNAGALKNLLENEFPLHQAATLEDTKI----VKILLFSGLDDSQFDDKGNTALYYAVDSG 106 (285)
T ss_dssp HHHHHHTTCHHHHHHH----HHTTGGGSCCTTCCHHHHHTTSSSCHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHH----HhCCCCCCCCCCCCHHHHHHHcCCHHH----HHHHHHCCCCCCCcCCCCCcHHHHHHHcC
Confidence 3444567777655444 445655554432334445566777664 4445566766654322 24455566778
Q ss_pred ChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCCC-ChhhhHHHHHHHHhCCChhHHHHHHHH
Q 038758 115 RMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK-DLVSWNAMLAGYALGGFREEVTNLLDE 186 (354)
Q Consensus 115 ~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~ 186 (354)
+.+-+.-+++.= ..+...+.+.+...+..|+.+-+..+++.-..+ +...-.+.+...+..|..+-+.-+++.
T Consensus 107 ~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 107 NMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp CHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 887777666652 122333345666777888888888888776543 221333445555677887666555544
No 275
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=67.57 E-value=17 Score=25.95 Aligned_cols=42 Identities=5% Similarity=-0.193 Sum_probs=18.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccC
Q 038758 38 GMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK 79 (354)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 79 (354)
..+...+..-.|.++++.+.+.+...+..|....|..+...|
T Consensus 29 ~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 29 EYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 333334444445555555544443334444333333333333
No 276
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=67.40 E-value=23 Score=24.93 Aligned_cols=65 Identities=9% Similarity=-0.068 Sum_probs=39.2
Q ss_pred cCCcccHHHHHHHHhccC---ChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758 62 RPDHFVCPKVYKACSELK---DYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 62 ~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
.|+..+--....++.+.+ +..++..+++.+.+.+..-....+--|.-++.+.|+++.|.+..+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l 104 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 104 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 455555444444444444 45567777777776552123344555666777788888887777765
No 277
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=66.37 E-value=44 Score=26.03 Aligned_cols=136 Identities=13% Similarity=-0.036 Sum_probs=79.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCcCCcc-------cHHHHHHHHh--ccCChhhHHHHHHHHHHhc---------cC
Q 038758 36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHF-------VCPKVYKACS--ELKDYRVGKDVYDYMISIK---------FE 97 (354)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~---------~~ 97 (354)
.+...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-.+.+ +.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 3455678899999999999888887766644 3355555542 5678877766666543311 11
Q ss_pred -CCceehhhHHHHHHhcCChhHHHHHHHhh-ccccc----------------hhhHHHHHHHhcCchhHHHHHhc---cC
Q 038758 98 -GNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFL----------------VNNSLIDFYAKCRYLKVSHCKFS---KI 156 (354)
Q Consensus 98 -~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~----------------~~~~li~~~~~~~~~~~a~~~~~---~~ 156 (354)
.+... .+.+...+..|+.+-+.-+++.= .++.. .-.+.+...+..|+.+-+..+++ .-
T Consensus 88 ~~d~~g-~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g 166 (260)
T 3jxi_A 88 DVYYRG-QTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ 166 (260)
T ss_dssp CSSEES-BCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC
T ss_pred ccccCC-CCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC
Confidence 11123 34455566778887777666643 11111 12244555667788888888887 33
Q ss_pred CC---CChhhhHHHHHHHH
Q 038758 157 KQ---KDLVSWNAMLAGYA 172 (354)
Q Consensus 157 ~~---~~~~~~~~li~~~~ 172 (354)
.. +|..-.+.|..+..
T Consensus 167 a~~~~~d~~g~TpLh~A~~ 185 (260)
T 3jxi_A 167 ADLRRQDSRGNTVLHALVA 185 (260)
T ss_dssp CCTTCCCTTSCCHHHHHHH
T ss_pred CCCcccCCCCCcHHHHHHH
Confidence 22 34444555555543
No 278
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=65.68 E-value=26 Score=27.41 Aligned_cols=194 Identities=10% Similarity=0.002 Sum_probs=102.7
Q ss_pred HHHHhccCChhhHHHHHHHHHHhccCCCce-------ehhhHHHHHH--hcCChhHHHHHHHhhc----------c----
Q 038758 72 YKACSELKDYRVGKDVYDYMISIKFEGNAC-------VKRPLLDLFI--KCGRMEITSGLFEEMD----------Q---- 128 (354)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~li~~~~--~~g~~~~a~~~~~~~~----------~---- 128 (354)
+...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-. .
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 334567899999999999888887766643 3455554443 5688888877777531 0
Q ss_pred -ccchhhHHHHHHHhcCchhHHHHHhccCCCCChh-----------------hhHHHHHHHHhCCChhHHHHHHHHHHhh
Q 038758 129 -DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLV-----------------SWNAMLAGYALGGFREEVTNLLDEMEMI 190 (354)
Q Consensus 129 -~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----------------~~~~li~~~~~~~~~~~a~~~~~~m~~~ 190 (354)
+...+ +.+...+..|+.+-+.-+++.-..++.. -.+.| ...+..|+.+-+.-+++..
T Consensus 89 ~d~~g~-t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL-~~A~~~g~~~~v~~Ll~~~--- 163 (260)
T 3jxi_A 89 VYYRGQ-TALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPL-SLAACTNQPHIVHYLTENG--- 163 (260)
T ss_dssp SSEESB-CHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHH-HHHHHTTCHHHHHHHHHCS---
T ss_pred cccCCC-CHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHH-HHHHHcCCHHHHHHHHhcc---
Confidence 11223 3455566778888888888765443322 23334 3445667765444433310
Q ss_pred hcCCCCCcc---hHHHHHHHhhhhcC-----ccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHH
Q 038758 191 QTDMQPNTI---SLSGVLAACAQVKG-----VKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISA 262 (354)
Q Consensus 191 ~~~~~p~~~---t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~ 262 (354)
..|..++.. -.+.+..++. .++ .+...++.+.+.+.|........ +.. .+|..-++. +..
T Consensus 164 ~~ga~~~~~d~~g~TpLh~A~~-~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~--------~~~--~~d~~g~tp-L~~ 231 (260)
T 3jxi_A 164 HKQADLRRQDSRGNTVLHALVA-IADNTRENTKFVTKMYDLLLIKCAKLFPDTN--------LEA--LLNNDGLSP-LMM 231 (260)
T ss_dssp SCCCCTTCCCTTSCCHHHHHHH-HCCSSHHHHHHHHHHHHHHHHHHHHHCTTCC--------GGG--CCCTTSCCH-HHH
T ss_pred ccCCCCcccCCCCCcHHHHHHH-hccCchhHHHHHHHHHHHHHHhCcccccccc--------hhh--cccCCCCCH-HHH
Confidence 055555432 2334433332 222 12223555556666542210000 000 123323333 444
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 038758 263 FVRSGQVVDALDLLRDVIVA 282 (354)
Q Consensus 263 ~~~~g~~~~a~~~~~~m~~~ 282 (354)
.++.|+.+-+..++++-...
T Consensus 232 A~~~g~~~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 232 AAKTGKIGIFQHIIRREIAD 251 (260)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhCCCc
Confidence 56778887777777665543
No 279
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=63.95 E-value=46 Score=25.38 Aligned_cols=207 Identities=12% Similarity=0.072 Sum_probs=102.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCcCCcc---cHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceeh--hhHHHHHH
Q 038758 37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHF---VCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK--RPLLDLFI 111 (354)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~li~~~~ 111 (354)
+...++.|+.+ +++.+.+.|..++.. .++.|. ..+..|+.+ +++.+.+.|..++.... .+.+...+
T Consensus 15 L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 85 (237)
T 3b7b_A 15 LHAAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLM-EAAENNHLE----AVKYLIKAGALVDPKDAEGSTCLHLAA 85 (237)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHH-HHHHTTCHH----HHHHHHTTTCCCCCCCTTSCCHHHHHH
T ss_pred HHHHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHH-HHHHhCCHH----HHHHHHhCCCCCCCCCCCCCcHHHHHH
Confidence 44456667765 444455566555443 233444 344556654 44555566655544322 34555666
Q ss_pred hcCChhHHHHHHHhhcc-----ccchhhHHHHHHHhcCchhHHHHHhccCCCCC---hhhhHHHHHHHHhCCChhHHHHH
Q 038758 112 KCGRMEITSGLFEEMDQ-----DFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKD---LVSWNAMLAGYALGGFREEVTNL 183 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~ 183 (354)
..|+.+-+..+++.-.. +.... +.+...++.|+.+-+..+++.-..++ ..-.+.+ ...++.|..+ +
T Consensus 86 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~----~ 159 (237)
T 3b7b_A 86 KKGHYEVVQYLLSNGQMDVNCQDDGGW-TPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICL-HWAAFSGCVD----I 159 (237)
T ss_dssp HTTCHHHHHHHHTTTCCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHHCCHH----H
T ss_pred HcCCHHHHHHHHhCCCCCcccCCCCCC-CHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHH-HHHHHCCCHH----H
Confidence 77887777766665311 11222 34455566677777777776544322 2222223 2334445543 3
Q ss_pred HHHHHhhhcCCCCCcchH--HHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHH
Q 038758 184 LDEMEMIQTDMQPNTISL--SGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIIS 261 (354)
Q Consensus 184 ~~~m~~~~~~~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~ 261 (354)
++.+. +.|..++.... .+.+...++.|+.+ +.+.+.+.|.++. .+|..-. +-+.
T Consensus 160 ~~~Ll--~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~gad~~-----------------~~d~~g~-t~l~ 215 (237)
T 3b7b_A 160 AEILL--AAKCDLHAVNIHGDSPLHIAARENRYD----CVVLFLSRDSDVT-----------------LKNKEGE-TPLQ 215 (237)
T ss_dssp HHHHH--TTTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHTTTCCTT-----------------CCCTTSC-CHHH
T ss_pred HHHHH--HcCCCCCCcCCCCCCHHHHHHHhCCHh----HHHHHHHcCCCCC-----------------ccCCCCC-CHHH
Confidence 44444 55555543211 12233334444433 3333444444211 1122222 2344
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 038758 262 AFVRSGQVVDALDLLRDVIVA 282 (354)
Q Consensus 262 ~~~~~g~~~~a~~~~~~m~~~ 282 (354)
..+..|+...++++.+.+.++
T Consensus 216 ~A~~~~~~~~~~~l~~~l~ds 236 (237)
T 3b7b_A 216 CASLNSQVWSALQMSKALQDS 236 (237)
T ss_dssp HSCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 455677888888888887753
No 280
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=63.88 E-value=46 Score=25.29 Aligned_cols=138 Identities=13% Similarity=0.043 Sum_probs=74.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCcee--hhhHHHHHHhc
Q 038758 36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV--KRPLLDLFIKC 113 (354)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~ 113 (354)
.+...++.|+++....+++.-...--.++....+.|.. .+..|+.+ +++.+.+.|..++... -.+.+...+..
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHW-ACSAGHTE----IVEFLLQLGVPVNDKDDAGWSPLHIAASA 83 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHH-HHHHTCHH----HHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHH-HHHcCcHH----HHHHHHHhCCCCCCcCCCCCCHHHHHHHc
Confidence 45566788999888888776433212334444444444 34556654 4455556676655432 22345556677
Q ss_pred CChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhccCCCC---ChhhhHHHHHHHHhCCChhHH
Q 038758 114 GRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQK---DLVSWNAMLAGYALGGFREEV 180 (354)
Q Consensus 114 g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a 180 (354)
|+.+-+..+++.- .++.... +.+...+..|+.+-+..+++.-..+ +..-.+.+. ..+..|+.+-+
T Consensus 84 ~~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~~v 155 (231)
T 3aji_A 84 GXDEIVKALLVKGAHVNAVNQNGC-TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMH-RAAAKGNLKMV 155 (231)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHHTCHHHH
T ss_pred CHHHHHHHHHHcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHH-HHHHcCCHHHH
Confidence 8877666665542 1122222 3455556778888777777654433 222233333 33455665443
No 281
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=63.86 E-value=18 Score=26.01 Aligned_cols=63 Identities=6% Similarity=0.019 Sum_probs=30.1
Q ss_pred HHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhH
Q 038758 55 LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEI 118 (354)
Q Consensus 55 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 118 (354)
.+++.|++++.. =..++..+...+..-.|.++++.+.+.+...+..|.---+..+...|-+.+
T Consensus 17 ~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 79 (150)
T 2xig_A 17 SIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISV 79 (150)
T ss_dssp HHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEE
Confidence 344555554443 233344444444455566666666555444444444444555555554443
No 282
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=63.60 E-value=21 Score=25.40 Aligned_cols=65 Identities=12% Similarity=0.071 Sum_probs=43.5
Q ss_pred HHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhH
Q 038758 53 FYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEI 118 (354)
Q Consensus 53 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 118 (354)
.+.+.+.|++++.. =..++..+...+..-.|.++++.+.+.+...+..|.---+..+...|-+.+
T Consensus 10 ~~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 10 LETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp HHHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEE
Confidence 34567788877665 445555666666777889999998877655566665556677777766543
No 283
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=63.51 E-value=13 Score=26.65 Aligned_cols=42 Identities=7% Similarity=-0.031 Sum_probs=20.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccC
Q 038758 37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK 79 (354)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 79 (354)
+..+...+ .-.|.++++.+.+.+...+..|.-.-|..+...|
T Consensus 25 l~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 25 LEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 33333334 4456666666655554444444444444444444
No 284
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=62.34 E-value=20 Score=25.75 Aligned_cols=57 Identities=5% Similarity=0.166 Sum_probs=27.2
Q ss_pred HHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhc-----cccchhhHHHHHHHhcCch
Q 038758 89 DYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMD-----QDFLVNNSLIDFYAKCRYL 146 (354)
Q Consensus 89 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~li~~~~~~~~~ 146 (354)
+.+.+.|+.++. .-..++..+...+..-.|.++++.+. .+..|...-++.+...|-+
T Consensus 16 ~~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 334455544433 23344555555555666677776662 2233333344555555543
No 285
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=62.25 E-value=64 Score=26.46 Aligned_cols=24 Identities=17% Similarity=0.455 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 038758 257 NSIISAFVRSGQVVDALDLLRDVI 280 (354)
Q Consensus 257 ~~li~~~~~~g~~~~a~~~~~~m~ 280 (354)
+.++.-|...|+.++|.+.++++.
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC
Confidence 456666777777777777777664
No 286
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=62.15 E-value=23 Score=26.97 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=34.9
Q ss_pred ccccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCH
Q 038758 214 VKLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288 (354)
Q Consensus 214 ~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 288 (354)
......+|..|...|+. ..-...|......+...|++.+|.++|+.-.+.+.+|-.
T Consensus 95 ~~~p~~if~~L~~~~IG-------------------~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 95 FHESENTFKYMFNKGIG-------------------TKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp HHHHHHHHHHHHHHTSS-------------------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred cCCHHHHHHHHHHCCCc-------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 34555666666666552 223345666666667777777777777777777766643
No 287
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=61.86 E-value=18 Score=26.48 Aligned_cols=72 Identities=8% Similarity=0.080 Sum_probs=49.0
Q ss_pred hHHHHHHH-HHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHh--ccCCCceehhhHHHHHHhcCChhHH
Q 038758 47 EEIVNLFY-LMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI--KFEGNACVKRPLLDLFIKCGRMEIT 119 (354)
Q Consensus 47 ~~a~~~~~-~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~a 119 (354)
+.+++-+. .+++.|++++.. =..++..+...+..-.|.++++.+.+. +...+..|.---+..+...|-+.+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i 88 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSI 88 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 44444443 356678887655 556667777777788888999888877 6566666655566788888876654
No 288
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=61.79 E-value=23 Score=22.09 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=42.6
Q ss_pred HHHHhCCCcCCcccHHHHHHHHhccC-ChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChh
Q 038758 54 YLMIDKGVRPDHFVCPKVYKACSELK-DYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRME 117 (354)
Q Consensus 54 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 117 (354)
+.+.+.|++++..- ..++..+...+ ..-.+.++++.+.+.+...+..|..-.+..+.+.|-+.
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 44667787776654 45566666654 56678888888887765556666666777777776553
No 289
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=61.75 E-value=76 Score=27.14 Aligned_cols=158 Identities=10% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHhcCChhHHHHHHHhh---------ccccchhhHHHHHHHhcCc-----hhHHHHHhccCCCCChhhhH-----H
Q 038758 106 LLDLFIKCGRMEITSGLFEEM---------DQDFLVNNSLIDFYAKCRY-----LKVSHCKFSKIKQKDLVSWN-----A 166 (354)
Q Consensus 106 li~~~~~~g~~~~a~~~~~~~---------~~~~~~~~~li~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~-----~ 166 (354)
|...|.+.|+.++..+++... .........+++.+....+ ++-..+.++........-.. -
T Consensus 25 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~k 104 (394)
T 3txn_A 25 QGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEAR 104 (394)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHHHHhc
Q 038758 167 MLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSCSVFN 246 (354)
Q Consensus 167 li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 246 (354)
+...|...|++.+|.+++..+. ..--..|..++..=+.++-
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~--~~~~~~dd~~~llev~lle------------------------------------- 145 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLL--RELKKLDDKNLLVEVQLLE------------------------------------- 145 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH--HHHTTSSCTHHHHHHHHHH-------------------------------------
T ss_pred HHHHHHHhhhHHHHHHHHHHHH--HHHhccccchhHHHHHHHH-------------------------------------
Q ss_pred ccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHc--CcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHH-
Q 038758 247 QLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVA--NVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYG- 323 (354)
Q Consensus 247 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~- 323 (354)
+..|...+++.++...+...... .+.|++..-..+ ...-...+.
T Consensus 146 -------------~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i--------------------~~~~Gi~~l~ 192 (394)
T 3txn_A 146 -------------SKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL--------------------DLQSGILHAA 192 (394)
T ss_dssp -------------HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH--------------------HHHHHHHHHH
T ss_pred -------------HHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH--------------------HHHhhHHHHH
Q ss_pred hcCChhHHHHHh
Q 038758 324 RCGAIQKSRKIF 335 (354)
Q Consensus 324 ~~g~~~~A~~~~ 335 (354)
..+++.+|...|
T Consensus 193 ~~rdyk~A~~~F 204 (394)
T 3txn_A 193 DERDFKTAFSYF 204 (394)
T ss_dssp TTSCHHHHHHHH
T ss_pred hccCHHHHHHHH
No 290
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=60.70 E-value=19 Score=25.32 Aligned_cols=32 Identities=6% Similarity=0.062 Sum_probs=13.3
Q ss_pred ChhHHHHHHHHHHhCCCcCCcccHHHHHHHHh
Q 038758 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACS 76 (354)
Q Consensus 45 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 76 (354)
..-.|.++++.+.+.+...+..|...-|..+.
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~ 64 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFE 64 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Confidence 34444455555444443333333333333333
No 291
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=60.36 E-value=20 Score=25.78 Aligned_cols=35 Identities=14% Similarity=0.080 Sum_probs=15.8
Q ss_pred ChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccC
Q 038758 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK 79 (354)
Q Consensus 45 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 79 (354)
..-.|.++++.+.+.+...+..|...-|..+...|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555555444444444333344444443
No 292
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=60.11 E-value=23 Score=25.49 Aligned_cols=65 Identities=14% Similarity=0.136 Sum_probs=45.0
Q ss_pred HHHHHhCCCcCCcccHHHHHHHHhccC-ChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhH
Q 038758 53 FYLMIDKGVRPDHFVCPKVYKACSELK-DYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEI 118 (354)
Q Consensus 53 ~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 118 (354)
.+.+.+.|++++.. =..++..+...+ ..-.|.++++.+.+.+...+..|.---+..+...|-+.+
T Consensus 5 ~~~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 5 NQALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 34567788887766 445566666666 677899999999887655666665556677777776544
No 293
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=60.04 E-value=66 Score=25.82 Aligned_cols=46 Identities=11% Similarity=0.125 Sum_probs=23.4
Q ss_pred hccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHH
Q 038758 76 SELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGL 122 (354)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 122 (354)
.+.|+++.+......-++.. +-|...-..|+..+|-.|++++|..-
T Consensus 8 l~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~Q 53 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQ 53 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 34455555555555444443 44444455555555555555555443
No 294
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=59.83 E-value=21 Score=25.13 Aligned_cols=64 Identities=13% Similarity=0.091 Sum_probs=42.6
Q ss_pred HHHHhCCCcCCcccHHHHHHHHhccC-ChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhH
Q 038758 54 YLMIDKGVRPDHFVCPKVYKACSELK-DYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEI 118 (354)
Q Consensus 54 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 118 (354)
+.+++.|++++.. =..++..+...+ ..-.|.++++.+.+.+...+..|.---+..+.+.|-+.+
T Consensus 7 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 7 SELRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 3466788877766 445556666665 677899999999887655566665555666666665543
No 295
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=58.01 E-value=22 Score=25.72 Aligned_cols=55 Identities=15% Similarity=0.185 Sum_probs=43.6
Q ss_pred cccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCH
Q 038758 215 KLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288 (354)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 288 (354)
+....+|..|.+.|+. ..-...|...-..+...|++.+|.++|+.-.+.+-+|-.
T Consensus 82 ~dp~~if~~L~~~~IG-------------------~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIG-------------------TLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTT-------------------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCc-------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 3477788888877763 334566778888889999999999999999998888854
No 296
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=58.00 E-value=17 Score=25.94 Aligned_cols=65 Identities=15% Similarity=0.049 Sum_probs=42.8
Q ss_pred HHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhH
Q 038758 52 LFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEI 118 (354)
Q Consensus 52 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 118 (354)
+-+.+++.|++++.. =..++..+...+ .-.|.++++.+.+.+...+..|.---+..+...|-+.+
T Consensus 6 ~~~~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 70 (145)
T 3eyy_A 6 WKSDLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSH 70 (145)
T ss_dssp HHHHHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEE
Confidence 334567778887766 344555555556 67899999998877655666655555566676665543
No 297
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=57.58 E-value=35 Score=24.89 Aligned_cols=60 Identities=8% Similarity=0.106 Sum_probs=38.5
Q ss_pred HHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhhccc-------cchhhHHHHHHHhcCchh
Q 038758 87 VYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEMDQD-------FLVNNSLIDFYAKCRYLK 147 (354)
Q Consensus 87 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~li~~~~~~~~~~ 147 (354)
+-+.+.+.|++++. .-..++..+...++.-.|.++++.+... ..|-..-++.+...|-+.
T Consensus 20 ~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 20 FKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 33445566877654 4556777778888888999999988432 223334556677776554
No 298
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=57.23 E-value=50 Score=23.55 Aligned_cols=65 Identities=9% Similarity=-0.068 Sum_probs=38.9
Q ss_pred cCCcccHHHHHHHHhccC---ChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh
Q 038758 62 RPDHFVCPKVYKACSELK---DYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 62 ~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 126 (354)
.|+..+--....++.+.. +..++..+++.+.+.+..-.....-.|.-++.+.|+++.|.++.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~l 103 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 103 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 455555444444555544 45677788888777532112333445566777788888887776665
No 299
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=57.12 E-value=31 Score=21.48 Aligned_cols=64 Identities=11% Similarity=0.066 Sum_probs=43.2
Q ss_pred HHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChh
Q 038758 8 HAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLG-YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYR 82 (354)
Q Consensus 8 ~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 82 (354)
.+.|.+.|+.+++.- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|-+.
T Consensus 5 ~~~l~~~g~~~t~~r-----------~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 5 NTALKKAGLKVTLPR-----------LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHHHTTCCCCHHH-----------HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHcCCCcCHHH-----------HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 345777887777663 23455555554 56778899999988776667777777777776666443
No 300
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=56.08 E-value=59 Score=24.10 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=57.2
Q ss_pred CcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh-ccccchhhHHHHHHHh
Q 038758 64 DHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAK 142 (354)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~li~~~~~ 142 (354)
+...-...+.++...++.+....+.+ +.+ .++..+-...+.++.+.|+.+....+.+.+ .++..+-...+.++.+
T Consensus 58 ~~~vr~~a~~~L~~~~~~~~~~~L~~-~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 133 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDERAVEPLIK-ALK---DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGE 133 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHH-HHc---CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44444445555555554433323322 221 355555666666666666654443333333 2333344455555555
Q ss_pred cCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHH
Q 038758 143 CRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEM 187 (354)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 187 (354)
.++.+....+.+.+..++...-...+.++.+.|.. ++...+..+
T Consensus 134 ~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~-~~~~~L~~~ 177 (201)
T 3ltj_A 134 IGDERAVEPLIKALKDEDGWVRQSAADALGEIGGE-RVRAAMEKL 177 (201)
T ss_dssp HTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSH-HHHHHHHHH
T ss_pred hCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 55544444444444445555555555555555543 344444444
No 301
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=55.71 E-value=29 Score=24.18 Aligned_cols=61 Identities=10% Similarity=0.151 Sum_probs=36.1
Q ss_pred hHHHHHHHhcCchhHHHHHhccCCCCCh---hhhHHHHHHHHhCCC--hhHHHHHHHHHHhhhcCCCC
Q 038758 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDL---VSWNAMLAGYALGGF--REEVTNLLDEMEMIQTDMQP 196 (354)
Q Consensus 134 ~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~p 196 (354)
+.++.-|...|+.++|.+.++++..|.- .....+..++-+.++ .+.+..++..+. ..|+-+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~--~~~~is 76 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLW--KSSTIT 76 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH--HTTCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH--HCCCcC
Confidence 4566667777777777777777765522 223344444444432 356777777776 555444
No 302
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=54.62 E-value=14 Score=26.18 Aligned_cols=45 Identities=7% Similarity=0.090 Sum_probs=25.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCC
Q 038758 36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD 80 (354)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 80 (354)
++..+...+..-.|.++++.+.+.+...+..|.-..|..+...|-
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 444555555556666666666666555555554444555554443
No 303
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=53.97 E-value=77 Score=24.77 Aligned_cols=105 Identities=14% Similarity=0.046 Sum_probs=58.3
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhccCCCce---ehhhHHHHHHhcCChhHHHHHHHhh-c---cccchhhHHHHHHHh
Q 038758 70 KVYKACSELKDYRVGKDVYDYMISIKFEGNAC---VKRPLLDLFIKCGRMEITSGLFEEM-D---QDFLVNNSLIDFYAK 142 (354)
Q Consensus 70 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~-~---~~~~~~~~li~~~~~ 142 (354)
+.+...++.|+.+.+.. +.+.|..++.. .-.+.+...+..|+.+-+..+++.- . .+... .+.+...+.
T Consensus 7 ~~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g-~t~L~~A~~ 81 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQ----LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG-ATPFLLAAI 81 (285)
T ss_dssp HHHHHHHHTTCHHHHHH----HHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC-CCHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHH----HHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC-CCHHHHHHH
Confidence 34445567777765444 44556555433 2235666777888887777666652 1 11222 244555667
Q ss_pred cCchhHHHHHhccCCCC---ChhhhHHHHHHHHhCCChhHH
Q 038758 143 CRYLKVSHCKFSKIKQK---DLVSWNAMLAGYALGGFREEV 180 (354)
Q Consensus 143 ~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a 180 (354)
.|+.+-+..+++.-..+ |..-++.+.. .+..|+.+-+
T Consensus 82 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~~~ 121 (285)
T 1wdy_A 82 AGSVKLLKLFLSKGADVNECDFYGFTAFME-AAVYGKVKAL 121 (285)
T ss_dssp HTCHHHHHHHHHTTCCTTCBCTTCCBHHHH-HHHTTCHHHH
T ss_pred cCCHHHHHHHHHcCCCCCccCcccCCHHHH-HHHhCCHHHH
Confidence 78888777777764433 3333444443 3456665433
No 304
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=53.69 E-value=33 Score=25.12 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhccCCC-ceehhhHHHHHHhcCChhHHHHHHHh
Q 038758 84 GKDVYDYMISIKFEGN-ACVKRPLLDLFIKCGRMEITSGLFEE 125 (354)
Q Consensus 84 a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 125 (354)
..++|..|...|+--. +..|......+-..|++.+|.++|..
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~ 121 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQE 121 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455555555554333 22344455555555555555555554
No 305
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=53.57 E-value=47 Score=27.68 Aligned_cols=62 Identities=11% Similarity=0.011 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhcc-CChhhHHHHHHHHHHhc
Q 038758 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL-KDYRVGKDVYDYMISIK 95 (354)
Q Consensus 33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~ 95 (354)
.+.++.-|...|+.++|...++++......| ......+..++-+. ...+.+.+++..+.+.|
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~-~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~ 76 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLF-IFVRHGVESTLERSAIAREHMGQLLHQLLCAG 76 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCC
Confidence 4678888999999999999998885221111 11122222222221 12345556666666554
No 306
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=53.27 E-value=40 Score=24.32 Aligned_cols=21 Identities=10% Similarity=0.009 Sum_probs=9.7
Q ss_pred HhccCChhhHHHHHHHHHHhc
Q 038758 75 CSELKDYRVGKDVYDYMISIK 95 (354)
Q Consensus 75 ~~~~~~~~~a~~~~~~m~~~~ 95 (354)
+...|++++|.++|+.-.+.+
T Consensus 111 lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 111 LEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHcC
Confidence 334455555555554444433
No 307
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=51.85 E-value=83 Score=30.64 Aligned_cols=29 Identities=10% Similarity=0.122 Sum_probs=24.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038758 254 VVWNSIISAFVRSGQVVDALDLLRDVIVA 282 (354)
Q Consensus 254 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 282 (354)
.-|..++..|-+.+-++.+.++-+...+.
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 36888899999999999999988887753
No 308
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=50.62 E-value=16 Score=25.56 Aligned_cols=65 Identities=8% Similarity=0.021 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccC--ChhhHHHHHHHHHHhccCC
Q 038758 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK--DYRVGKDVYDYMISIKFEG 98 (354)
Q Consensus 33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~ 98 (354)
.+.++.-|...|+.++|...++++...... .......+..++-+.+ ..+.+.+++..+.+.|+.+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 467888899999999999999998621111 1112233344444432 2455677777777665433
No 309
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=49.77 E-value=76 Score=23.48 Aligned_cols=130 Identities=10% Similarity=-0.026 Sum_probs=64.9
Q ss_pred HHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCcc
Q 038758 136 LIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVK 215 (354)
Q Consensus 136 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~ 215 (354)
.+.++.+.++.+....+.+.+..++...-...+.++.+.++.+.. ..+..+. . .++...-...+.++.+.++.+
T Consensus 65 a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l--~---d~~~~vr~~a~~aL~~~~~~~ 138 (201)
T 3ltj_A 65 AADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAV-EPLIKAL--K---DEDWFVRIAAAFALGEIGDER 138 (201)
T ss_dssp HHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGH-HHHHHHT--T---CSSHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHH-HHHHHHH--c---CCCHHHHHHHHHHHHHhCCHH
Confidence 344444455444444444555556666666677777777765433 3333332 2 244444455566666665432
Q ss_pred ccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHH
Q 038758 216 LGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVL 295 (354)
Q Consensus 216 ~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 295 (354)
....+. .+.+ .++...-...+.++.+.|.. ++...+.++.+. ++...-...+
T Consensus 139 ~~~~L~-~~l~-----------------------d~~~~vr~~A~~aL~~~~~~-~~~~~L~~~l~d---~~~~vr~~A~ 190 (201)
T 3ltj_A 139 AVEPLI-KALK-----------------------DEDGWVRQSAADALGEIGGE-RVRAAMEKLAET---GTGFARKVAV 190 (201)
T ss_dssp GHHHHH-HHTT-----------------------CSSHHHHHHHHHHHHHHCSH-HHHHHHHHHHHH---CCHHHHHHHH
T ss_pred HHHHHH-HHHc-----------------------CCCHHHHHHHHHHHHHhCch-hHHHHHHHHHhC---CCHHHHHHHH
Confidence 222211 1111 34555555666777777653 455555555532 3444433334
Q ss_pred HHhh
Q 038758 296 PACL 299 (354)
Q Consensus 296 ~~~~ 299 (354)
.++.
T Consensus 191 ~aL~ 194 (201)
T 3ltj_A 191 NYLE 194 (201)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 310
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=49.34 E-value=56 Score=23.92 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=11.2
Q ss_pred HhccCChhhHHHHHHHHHHhccCC
Q 038758 75 CSELKDYRVGKDVYDYMISIKFEG 98 (354)
Q Consensus 75 ~~~~~~~~~a~~~~~~m~~~~~~~ 98 (354)
+...|++..|.++|+.-++.+-.|
T Consensus 106 lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 106 YEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCc
Confidence 334455555555555444444333
No 311
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=48.93 E-value=95 Score=24.33 Aligned_cols=118 Identities=12% Similarity=-0.020 Sum_probs=70.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCcC-------CcccHHHHHHHHh--ccCChhhHHHHHHHHHHhc-----cC----
Q 038758 36 MMGMYNVLGYYEEIVNLFYLMIDKGVRP-------DHFVCPKVYKACS--ELKDYRVGKDVYDYMISIK-----FE---- 97 (354)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~~~~~p-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~-----~~---- 97 (354)
.+...++.|+.+.+..+++...+.+... +...++.|..++. +.|+.+-+.-+++.-.+.+ +.
T Consensus 16 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~ 95 (273)
T 2pnn_A 16 SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYT 95 (273)
T ss_dssp HHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccc
Confidence 4455678899999999998887766433 4455666766654 3577776666666533211 11
Q ss_pred -CCceehhhHHHHHHhcCChhHHHHHHHhh-ccccc----------------hhhHHHHHHHhcCchhHHHHHhc
Q 038758 98 -GNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFL----------------VNNSLIDFYAKCRYLKVSHCKFS 154 (354)
Q Consensus 98 -~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~----------------~~~~li~~~~~~~~~~~a~~~~~ 154 (354)
.+....+ -+...+..|+.+-+..+++.- .++.. .-.+.+...+..|+.+-+..+++
T Consensus 96 ~~d~~g~t-pL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 169 (273)
T 2pnn_A 96 DSYYKGQT-ALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ 169 (273)
T ss_dssp STTTTTCC-HHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHH
T ss_pred cccCCCCC-HHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 1223333 444556778887777666653 11111 12234555667788888888887
No 312
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=48.82 E-value=81 Score=23.54 Aligned_cols=79 Identities=11% Similarity=0.050 Sum_probs=30.6
Q ss_pred CCceehhhHHHHHHhcCChhHHHHHHHhh-ccccchhhHHHHHHHhcCchhHHHHHhccCCCCChhhhHHHHHHHHhCCC
Q 038758 98 GNACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGF 176 (354)
Q Consensus 98 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 176 (354)
++..+-...+.++.+.|+.+....+.+-+ .++..+-...+.++.+.|+.+....+.+.+..++...-...+.++.+.+.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 34444444444455544433322222222 22233333344444444443333333333333444443444444444443
No 313
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=48.33 E-value=35 Score=19.44 Aligned_cols=39 Identities=15% Similarity=0.076 Sum_probs=29.0
Q ss_pred hHHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCC--hhHHHHHHHHHH
Q 038758 4 GIQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGY--YEEIVNLFYLMI 57 (354)
Q Consensus 4 a~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~--~~~a~~~~~~m~ 57 (354)
-+|.++.+++.|+.+..+. .++.+.|+ ++.|++.+.+|.
T Consensus 9 n~qmlq~L~eMGFd~erae---------------~Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 9 NRQMLQELVNAGCDQEMAG---------------RALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp CHHHHHHHHHHHCCHHHHH---------------HHHHHHTSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCHHHHH---------------HHHHHhCcccHHHHHHHHHHhc
Confidence 4677889999999887552 34455566 899999998884
No 314
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=47.59 E-value=90 Score=23.68 Aligned_cols=85 Identities=7% Similarity=-0.068 Sum_probs=54.0
Q ss_pred HHHHhccCChhhHHHHHHHHHHhccCCCcee--hhhHHHHHHhcCChhHHHHHHHhh-c---cccchhhHHHHHHHhcCc
Q 038758 72 YKACSELKDYRVGKDVYDYMISIKFEGNACV--KRPLLDLFIKCGRMEITSGLFEEM-D---QDFLVNNSLIDFYAKCRY 145 (354)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~-~---~~~~~~~~li~~~~~~~~ 145 (354)
+...+..|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+..+++.= . .+... .+.+...+..|+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g-~t~l~~A~~~~~ 91 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHG-QTAAHLACEHRS 91 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS-CCHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCC-CCHHHHHHHcCC
Confidence 3345677899988888888777776665442 234566667788887766666542 1 12222 234555567788
Q ss_pred hhHHHHHhccCC
Q 038758 146 LKVSHCKFSKIK 157 (354)
Q Consensus 146 ~~~a~~~~~~~~ 157 (354)
.+-+..+++...
T Consensus 92 ~~~~~~Ll~~~~ 103 (241)
T 1k1a_A 92 PTCLRALLDSAA 103 (241)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHcCC
Confidence 888877777654
No 315
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=47.39 E-value=1.2e+02 Score=25.15 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=9.1
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 038758 259 IISAFVRSGQVVDALDLLR 277 (354)
Q Consensus 259 li~~~~~~g~~~~a~~~~~ 277 (354)
++..+.+....+.+.++|+
T Consensus 147 vl~~l~~~~g~~~l~~~~~ 165 (339)
T 1ug3_A 147 ILGLLCKSMGPKKVGTLWR 165 (339)
T ss_dssp HHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHH
Confidence 3444444444555555554
No 316
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=47.14 E-value=70 Score=25.02 Aligned_cols=91 Identities=14% Similarity=0.123 Sum_probs=48.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhhhcCCCC----CcchHHHHHHHhhhhcCccccchhhhHhhhhccccccccchhHHHH
Q 038758 167 MLAGYALGGFREEVTNLLDEMEMIQTDMQP----NTISLSGVLAACAQVKGVKLGKAIHGYVLRHHIHLSTACGFVICSC 242 (354)
Q Consensus 167 li~~~~~~~~~~~a~~~~~~m~~~~~~~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 242 (354)
-+..+....++++|.+++++.++.-.++++ +.......++.-.....-.-+..+.+.+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---------------- 87 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---------------- 87 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------
Confidence 356677788888888888877632334432 112222223332222222222222222211
Q ss_pred HHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038758 243 SVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280 (354)
Q Consensus 243 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 280 (354)
..+...-...+..+.+.|+.++|.++|=+..
T Consensus 88 -------~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 88 -------SNEIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp -------CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------cCCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 2233344556788888999999988886554
No 317
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=45.98 E-value=1e+02 Score=23.82 Aligned_cols=55 Identities=11% Similarity=-0.145 Sum_probs=28.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCcCCc-------ccHHHHHHHHhc--cCChhhHHHHHHH
Q 038758 36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDH-------FVCPKVYKACSE--LKDYRVGKDVYDY 90 (354)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~--~~~~~~a~~~~~~ 90 (354)
.+...++.|+.+.+..+++.+.+.|..++. ...+.|..++.. .|+.+-+..+++.
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 68 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI 68 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhc
Confidence 445556667777766677666666654443 233344433322 2555555444433
No 318
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.96 E-value=1.6e+02 Score=26.21 Aligned_cols=56 Identities=4% Similarity=-0.065 Sum_probs=30.4
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhh-------HHHHHHhcCChhHHHHHHHhh
Q 038758 68 CPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRP-------LLDLFIKCGRMEITSGLFEEM 126 (354)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-------li~~~~~~g~~~~a~~~~~~~ 126 (354)
+|.+++.|...+.++.|..+..... ++.+...-+. +...+.-.+++.+|.+.+...
T Consensus 234 ~nllLRnYL~~~~y~qA~~lvsk~~---fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 234 INLILRDFLNNGEVDSASDFISKLE---YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHSSCSTTHHHHHHHHC---SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCcHHHHHHHHhcCc---CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 5666666777777777777766543 2222222222 234445556666666665553
No 319
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=45.86 E-value=20 Score=25.90 Aligned_cols=65 Identities=8% Similarity=0.021 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccC--ChhhHHHHHHHHHHhccCC
Q 038758 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK--DYRVGKDVYDYMISIKFEG 98 (354)
Q Consensus 33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~ 98 (354)
.+.++.-|...|+.++|...++++...... ...+...+..++-+.+ ..+.+.+++..+.+.|+.+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 467888899999999999999998521110 1112233344444432 2445667777776655433
No 320
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=45.67 E-value=28 Score=25.15 Aligned_cols=61 Identities=10% Similarity=0.151 Sum_probs=34.1
Q ss_pred hHHHHHHHhcCchhHHHHHhccCCCCCh---hhhHHHHHHHHhCCC--hhHHHHHHHHHHhhhcCCCC
Q 038758 134 NSLIDFYAKCRYLKVSHCKFSKIKQKDL---VSWNAMLAGYALGGF--REEVTNLLDEMEMIQTDMQP 196 (354)
Q Consensus 134 ~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~p 196 (354)
+.++.-|...|+.++|.+.++++..|.- .+...+..++-+.++ .+.+..++..+. ..|+-+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~--~~~~is 78 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLW--KSSTIT 78 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH--HTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH--HCCCcC
Confidence 4466666677777777777777765521 223334444444322 345667777776 555443
No 321
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=45.31 E-value=36 Score=26.35 Aligned_cols=55 Identities=15% Similarity=0.225 Sum_probs=44.8
Q ss_pred cccchhhhHhhhhccccccccchhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCcCCCH
Q 038758 215 KLGKAIHGYVLRHHIHLSTACGFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALDLLRDVIVANVKPNT 288 (354)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 288 (354)
+....+|..|...|+. ..-...|...-..+...|++.+|.++|+.-.+.+.+|-.
T Consensus 131 ~~p~~if~~L~~~~IG-------------------~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIG-------------------QESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCS-------------------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcc-------------------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 5677888888888873 334566778888889999999999999999998888854
No 322
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane binding, matrix vessicle, protein and metal binding protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A 1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A 1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A 1bcw_A 2ran_A ...
Probab=45.28 E-value=1.3e+02 Score=24.80 Aligned_cols=165 Identities=12% Similarity=0.026 Sum_probs=72.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhcc--CChhhHHHHHHHHHHhccCC-----Cceehh
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL--KDYRVGKDVYDYMISIKFEG-----NACVKR 104 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~m~~~~~~~-----~~~~~~ 104 (354)
.|-.++-++.....-..|..+.+.|.. ...|.. .++..++.. .++....+.|+.+-...+.- ....+.
T Consensus 75 ~f~~ll~~l~~~~~~~DA~~L~~A~kg--~Gtde~---~lieIL~~Rs~~ql~~I~~aY~~~y~~~Le~di~~e~sG~~~ 149 (320)
T 1yii_A 75 KFETLMVSLMRPARIFDAHALKHAIKG--AGTNEK---VLTEILASRTPAEVQNIKQVYMQEYEANLEDKITGETSGHFQ 149 (320)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHSS--SSCCHH---HHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHH
T ss_pred hHHHHHHHHccChHHHHHHHHHHHhcc--CCCchH---HHhHHHhcCCHHHHHHHHHHHHHhhCcCHHHHHHhhcCCcHH
Confidence 344455555544444556666666643 334444 344444432 24555556666554332211 122345
Q ss_pred hHHHHHHhcCCh-----------hHHHHHHHhhcc-ccchhhHHHHHHHhcCc--hhHHHHHhccCCC---------CCh
Q 038758 105 PLLDLFIKCGRM-----------EITSGLFEEMDQ-DFLVNNSLIDFYAKCRY--LKVSHCKFSKIKQ---------KDL 161 (354)
Q Consensus 105 ~li~~~~~~g~~-----------~~a~~~~~~~~~-~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~---------~~~ 161 (354)
.++-++.+..+. ..|..+++.++. ...--..++..++.... +....+.|+++-. ...
T Consensus 150 ~~l~~l~~~~r~~~~~vd~~~a~~dA~~L~~A~~~~~Gtde~~li~Il~tRs~~~L~~i~~~Y~~~~g~~L~~~I~~e~s 229 (320)
T 1yii_A 150 RLLVVLLQANRDPDGRVDEALVEKDAQVLFRAGELKWGTDEETFITILGTRSVSHLRRVFDKYMTISGFQIEETIDRETS 229 (320)
T ss_dssp HHHHHHHTTCCCCSCCCCHHHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHCCTTC
T ss_pred HHHHHHHhhccCccccCCchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCHHHHHHHHHHHHHHHCcCHHHHHhhhcC
Confidence 555555554432 226666666642 22223345555543322 2233333322211 111
Q ss_pred hhhHHHHHHH---HhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHH
Q 038758 162 VSWNAMLAGY---ALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205 (354)
Q Consensus 162 ~~~~~li~~~---~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll 205 (354)
-.|..++.+. .+....-.|..+++.|+ . ...|..++..++
T Consensus 230 Gd~~~~Llalv~~~~~~~~~~A~~L~~a~~--g--~Gtd~~~Liril 272 (320)
T 1yii_A 230 GDLEKLLLAVVKCIRSVPAYFAETLYYSMK--G--AGTDDDTLIRVM 272 (320)
T ss_dssp CHHHHHHHHHHHHHHCHHHHHHHHHHHHHS--S--SSCCHHHHHHHH
T ss_pred chHHHHHHHHHHhccCCcHHHHHHHHHhhc--c--CCCcHHHHHHHH
Confidence 1233333222 22222346777888886 3 445555555444
No 323
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=45.26 E-value=65 Score=31.24 Aligned_cols=173 Identities=12% Similarity=-0.016 Sum_probs=78.4
Q ss_pred HHHHhcCchhHHHHHhccCCC-CChhh--hHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHH---HHHHHhhhh
Q 038758 138 DFYAKCRYLKVSHCKFSKIKQ-KDLVS--WNAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLS---GVLAACAQV 211 (354)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~---~ll~~~~~~ 211 (354)
..++-.|+-+....++..+.+ .+... .-.+.-++.-.|+.+.+..+++.+. . ...|.. -|. ++.-+|+..
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~--~-~~dp~v-Rygaa~alglAyaGT 573 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKML--A-SDESLL-RYGGAFTIALAYAGT 573 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHH--H-CSCHHH-HHHHHHHHHHHTTTS
T ss_pred hhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHH--h-CCCHHH-HHHHHHHHHHHhcCC
Confidence 334455666666666554322 12222 2233334456788888888877775 2 222222 232 222346667
Q ss_pred cCccccchhhhHhhhhcccccc----------ccchhHHHHHHhcccC-CCCcchHH--HHHHHHHhcCCH-HHHHHHHH
Q 038758 212 KGVKLGKAIHGYVLRHHIHLST----------ACGFVICSCSVFNQLS-TRDVVVWN--SIISAFVRSGQV-VDALDLLR 277 (354)
Q Consensus 212 ~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~-~~~~~~~~--~li~~~~~~g~~-~~a~~~~~ 277 (354)
|+.....+++..+.+...+... ..|+.+.+.++++.+. ..|..+-. .+.-+....|+. .+|++++.
T Consensus 574 Gn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 7766666666655543211000 1222222333333221 12222222 222233334442 56777777
Q ss_pred HHHHcCcCCCHhhHHHHHHHhhccCcc-cCccccchhHHHH
Q 038758 278 DVIVANVKPNTVTIVSVLPACLKLAAL-PQGLGTGSFVWNA 317 (354)
Q Consensus 278 ~m~~~g~~p~~~t~~~li~~~~~~~~~-~~~~~~~~~~~~~ 317 (354)
.+.. .+|..+-...+.+++..|.- ..+..|-+..+..
T Consensus 654 ~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~ 691 (963)
T 4ady_A 654 PLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINK 691 (963)
T ss_dssp HHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHH
T ss_pred HHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHH
Confidence 7753 34555544455555544432 2233444444333
No 324
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=44.49 E-value=26 Score=22.96 Aligned_cols=37 Identities=3% Similarity=-0.082 Sum_probs=27.0
Q ss_pred CchhHHHHHhccCCCCChhhhHHHHHHHHhCCChhHH
Q 038758 144 RYLKVSHCKFSKIKQKDLVSWNAMLAGYALGGFREEV 180 (354)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 180 (354)
.+.+.|.++++.++..+...|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 3566777777777777778888888888766766555
No 325
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=44.46 E-value=23 Score=24.89 Aligned_cols=54 Identities=15% Similarity=0.113 Sum_probs=40.0
Q ss_pred CChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCC
Q 038758 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99 (354)
Q Consensus 44 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 99 (354)
.+..+++.++++....+..-.....--|.-++.+.|+++.|.+..+.+.+. .|+
T Consensus 57 ~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~ 110 (134)
T 3o48_A 57 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 110 (134)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTT
T ss_pred HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCC
Confidence 355678999999887663223444555666889999999999999999875 454
No 326
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=44.35 E-value=94 Score=23.58 Aligned_cols=56 Identities=2% Similarity=-0.095 Sum_probs=36.3
Q ss_pred HhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCC-----hhhHHHHHHHHHHhccC
Q 038758 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD-----YRVGKDVYDYMISIKFE 97 (354)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~m~~~~~~ 97 (354)
.|..+.+.|+-.+.+|.+.| .|.-..=..++-+.-.-|. ...|...++.....|.+
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 45689999999999999999 6655444445555544442 33455666666666643
No 327
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=43.80 E-value=42 Score=23.93 Aligned_cols=54 Identities=15% Similarity=0.113 Sum_probs=38.7
Q ss_pred CChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCC
Q 038758 44 GYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGN 99 (354)
Q Consensus 44 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 99 (354)
.+..+++.+++.....+..-.....-.|.-++.+.|+++.|.++.+.+.+. .|+
T Consensus 56 ~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 56 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp HHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred HHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 345578889998887543223333444555788999999999999999976 554
No 328
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=43.40 E-value=19 Score=21.16 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=18.3
Q ss_pred cCChhHHHHHHHHHHhCC-CcCCcc
Q 038758 43 LGYYEEIVNLFYLMIDKG-VRPDHF 66 (354)
Q Consensus 43 ~~~~~~a~~~~~~m~~~~-~~p~~~ 66 (354)
.-+++.|...|.++...| ++|+.+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 458999999999998765 565543
No 329
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=43.29 E-value=54 Score=25.41 Aligned_cols=60 Identities=5% Similarity=0.084 Sum_probs=42.0
Q ss_pred hhhHHHHHHHHHHhccCCC-ceehhhHHHHHHhcCChhHHHHHHHhh-ccccchhhHHHHHH
Q 038758 81 YRVGKDVYDYMISIKFEGN-ACVKRPLLDLFIKCGRMEITSGLFEEM-DQDFLVNNSLIDFY 140 (354)
Q Consensus 81 ~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~li~~~ 140 (354)
.+...++|..|...|+.-. ...|......+...|++.+|.++|+.= .........|...|
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~ 191 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKY 191 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 3577789999988887654 445778888888889999999988875 33334444444433
No 330
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=42.02 E-value=39 Score=19.82 Aligned_cols=29 Identities=3% Similarity=-0.027 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHhccCCCceehhhHHHHH
Q 038758 82 RVGKDVYDYMISIKFEGNACVKRPLLDLF 110 (354)
Q Consensus 82 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 110 (354)
++|.+.|-+|++..-.+...+|...|+..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34444454444443333444555555554
No 331
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=41.04 E-value=37 Score=23.61 Aligned_cols=46 Identities=7% Similarity=0.025 Sum_probs=26.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCCh
Q 038758 36 MMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDY 81 (354)
Q Consensus 36 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 81 (354)
++..+...+..-.|.++++.+.+.+...+..|....|..+...|-+
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 4455555555666777777776665555555555555555555533
No 332
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=40.68 E-value=2.7e+02 Score=27.15 Aligned_cols=48 Identities=21% Similarity=0.276 Sum_probs=21.7
Q ss_pred hccCChhhHHHHHHHHHHhccCCCceehhhHHHH--HHhcCChhHHHHHHHhh
Q 038758 76 SELKDYRVGKDVYDYMISIKFEGNACVKRPLLDL--FIKCGRMEITSGLFEEM 126 (354)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~~ 126 (354)
...|+.+....++..+.+. .+..+...+.-+ +...|+.+.+..+.+.+
T Consensus 501 vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L 550 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQELADDLITKM 550 (963)
T ss_dssp TTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHH
Confidence 3445555555555554432 122222222222 33456666655555554
No 333
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=39.89 E-value=92 Score=21.62 Aligned_cols=113 Identities=10% Similarity=-0.099 Sum_probs=58.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC-cCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCcee--hhhHHHHHH
Q 038758 35 SMMGMYNVLGYYEEIVNLFYLMIDKGV-RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV--KRPLLDLFI 111 (354)
Q Consensus 35 ~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~ 111 (354)
+.+...++.|+.+.+..+++. ....+ ..+....+.|.. +..|+.+ +.+.+.+.|..++... -.+.+...+
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~--~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 76 (156)
T 1bd8_A 4 DRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV--MMFGSTA----IALELLKQGASPNVQDTSGTSPVHDAA 76 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH--SCTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred hHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH--HHcCCHH----HHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 345556778888888888877 21111 223333444443 6667665 4444455666555432 123445555
Q ss_pred hcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhcc
Q 038758 112 KCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSK 155 (354)
Q Consensus 112 ~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 155 (354)
..|+.+-+.-+++.- ..+....+ .+...++.|+.+-+.-+++.
T Consensus 77 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 77 RTGFLDTLKVLVEHGADVNVPDGTGAL-PIHLAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp HTTCHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHHTCHHHHHHHHTT
T ss_pred HcCcHHHHHHHHHcCCCCCCcCCCCCc-HHHHHHHhChHHHHHHHHhc
Confidence 667776665555432 11222222 33344455666666555555
No 334
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein; 2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A 1ycn_A 2q4c_A 1dk5_A
Probab=39.63 E-value=1.6e+02 Score=24.26 Aligned_cols=107 Identities=10% Similarity=0.062 Sum_probs=47.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhcc--CChhhHHHHHHHHHHhccCC-----Cceehh
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL--KDYRVGKDVYDYMISIKFEG-----NACVKR 104 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~m~~~~~~~-----~~~~~~ 104 (354)
.|-.++-++....--..|..+.+-|. |...|..+ ++..++.. .++....+.|+.+-...+.- ....+.
T Consensus 77 ~f~~ll~~l~~~~~~~dA~~l~~A~k--g~Gtde~~---lieIL~tRs~~ql~~i~~~Y~~~~g~~Le~dI~~e~sG~~~ 151 (321)
T 1n00_A 77 DFERLVLLWALDPAERDALLANEATK--RWTSSNQV---LMEIACTRSANQLLHARQAYHARYKKSLEEDVAHHTTGDFH 151 (321)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHS--SSCSSCHH---HHHHHHSSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHH
T ss_pred hHHHHHHHHcCChhHHHHHHHHHHhh--ccCCCHHH---HHHHHhcCCHHHHHHHHHHHHHHhCccHHHHHHhccCcHHH
Confidence 34444444444333445555555553 33345443 33333332 24445555555544332211 122345
Q ss_pred hHHHHHHhcCChh-----------HHHHHHHhhccccchhhHHHHHHHhc
Q 038758 105 PLLDLFIKCGRME-----------ITSGLFEEMDQDFLVNNSLIDFYAKC 143 (354)
Q Consensus 105 ~li~~~~~~g~~~-----------~a~~~~~~~~~~~~~~~~li~~~~~~ 143 (354)
.++.++.+..+.+ .|..+++.++....+-..++..++..
T Consensus 152 ~~L~~lv~~~r~~~~~vd~~~~~~dA~~L~~A~~g~~gtde~lirIl~~R 201 (321)
T 1n00_A 152 KLLLPLVSSYRYEGEEVNMTLAKTEAKLLHEKISNKAYSDDDVIRVLATR 201 (321)
T ss_dssp HHHHHHHHCCCCCSCCCCHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHS
T ss_pred HHHHHHHhcccCCCcCCChhhhHHHHHHHHHHhhCcCCCcHHHHHHHHhC
Confidence 5555555554333 56666666643222222255555443
No 335
>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein, helix BUN heparin, hexasaccharide, metal binding protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB: 2hyu_A* 2hyw_A 1w7b_A 1xjl_A
Probab=39.15 E-value=1.6e+02 Score=24.11 Aligned_cols=149 Identities=13% Similarity=0.082 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhCCCcCCcccHHHHHHHHhcc--CChhhHHHHHHHHHHhccC-----CCceehhhHHHHHHhcCC-----
Q 038758 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSEL--KDYRVGKDVYDYMISIKFE-----GNACVKRPLLDLFIKCGR----- 115 (354)
Q Consensus 48 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~m~~~~~~-----~~~~~~~~li~~~~~~g~----- 115 (354)
.|..+.+.|+..| .|. ..|+..++.. .+.....+.|..+-...+. -....|..++-++....+
T Consensus 79 DA~~L~~AmkG~G--tde---~~LieIL~~Rs~~q~~~Ik~aY~~~y~~~L~~di~se~sG~f~~ll~~l~~~~r~~e~~ 153 (308)
T 2hyv_A 79 DASELKASMKGLG--TDE---DSLIEIICSRTNQELQEINRVYKEMYKTDLEKDIISDTSGDFRKLMVALAKGRRAEDGS 153 (308)
T ss_dssp HHHHHHHHTSTTC--CCH---HHHHHHHHHCCHHHHHHHHHHHHHHHSSCHHHHHHHTCCHHHHHHHHHHHTCCCCCCCS
T ss_pred HHHHHHHHhhcCC--CCH---HHHHHHHhcCCHHHHHHHHHHHHHhhCCCHHHHHhhccCccHHHHHHHHHccccccccC
Confidence 3444455554433 343 4455555433 2455666666665433221 123346677777776655
Q ss_pred -------hhHHHHHHHhhcc-ccchhhHHHHHHHhcCc--hhHHHHHhccCCCCCh---------hhhHHHHHHH---Hh
Q 038758 116 -------MEITSGLFEEMDQ-DFLVNNSLIDFYAKCRY--LKVSHCKFSKIKQKDL---------VSWNAMLAGY---AL 173 (354)
Q Consensus 116 -------~~~a~~~~~~~~~-~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~---------~~~~~li~~~---~~ 173 (354)
-..|..+++.+.. ...--..++..++.... +....+.|+++-..+. -.+..++.+. .+
T Consensus 154 ~vd~~~a~~DA~~L~~A~~~~~Gtde~~li~Il~~RS~~~L~~i~~~Y~~~~g~~Le~~I~~e~sG~~~~~L~~lv~~~~ 233 (308)
T 2hyv_A 154 VIDYELIDQDARDLYDAGVKRKGTDVPKWISIMTERSVPHLQKVFDRYKSYSPYDMLESIRKEVKGDLENAFLNLVQCIQ 233 (308)
T ss_dssp SCCHHHHHHHHHHHHHTTTTSSSCCHHHHHHHHHHSCHHHHHHHHHHHTTTCSSCHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHhhccCCCcHHHHHHHHHhCCHHHHHHHHHHHHHHHCcCHHHHHHHhcCchHHHHHHHHHhccC
Confidence 4466677776522 22234456666665433 4444555555543211 1122222222 22
Q ss_pred CCChhHHHHHHHHHHhhhcCCCCCcchHHHHH
Q 038758 174 GGFREEVTNLLDEMEMIQTDMQPNTISLSGVL 205 (354)
Q Consensus 174 ~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll 205 (354)
......|..+++.|+ . ...|..++..++
T Consensus 234 ~~~~~~A~~L~~A~~--g--~GTde~~liril 261 (308)
T 2hyv_A 234 NKPLYFADRLYDSMK--G--KGTRDKVLIRIM 261 (308)
T ss_dssp CHHHHHHHHHHHHHS--S--SSCCHHHHHHHH
T ss_pred CCcHHHHHHHHHHhc--c--CCCCHHHHHHHH
Confidence 222235778888886 4 344555555444
No 336
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=38.57 E-value=1.1e+02 Score=22.27 Aligned_cols=32 Identities=9% Similarity=0.132 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHHHcCcCCCH
Q 038758 256 WNSIISAFVRSGQ-VVDALDLLRDVIVANVKPNT 288 (354)
Q Consensus 256 ~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~ 288 (354)
++.+..+. ..++ ...-.++.+.+.+.|..|+.
T Consensus 141 ~t~L~~A~-~~~~~~~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 141 YTALIEAV-GLREGNQLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp CCHHHHHH-HSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred CCHHHHHH-HhccchhhHHHHHHHHHHCCCCCCc
Confidence 33444433 3333 33345666666777766654
No 337
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=37.29 E-value=96 Score=21.04 Aligned_cols=75 Identities=11% Similarity=0.170 Sum_probs=48.1
Q ss_pred ChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHh-ccCCCceehhhHHHHHHhcCChhHHHHHH
Q 038758 45 YYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI-KFEGNACVKRPLLDLFIKCGRMEITSGLF 123 (354)
Q Consensus 45 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 123 (354)
++.+|+.-+++.... .+|......++..+... ++.+.++.....+. |+ .+.++...+....+.|-++.. +.+
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w 75 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFW 75 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHH
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHH
Confidence 456677777776544 34544455555554432 56666666666543 54 577888888988988888666 455
Q ss_pred Hhh
Q 038758 124 EEM 126 (354)
Q Consensus 124 ~~~ 126 (354)
..|
T Consensus 76 ~~m 78 (119)
T 1wty_A 76 LEM 78 (119)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
No 338
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=37.15 E-value=1.4e+02 Score=22.95 Aligned_cols=83 Identities=11% Similarity=-0.087 Sum_probs=41.4
Q ss_pred HHHhccCChhhHHHHHHHHHHhccCCCc-------eehhhHHHHHHhc---CChhHHHHHHHhh-ccc------------
Q 038758 73 KACSELKDYRVGKDVYDYMISIKFEGNA-------CVKRPLLDLFIKC---GRMEITSGLFEEM-DQD------------ 129 (354)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~---g~~~~a~~~~~~~-~~~------------ 129 (354)
...+..|+.+.+..+++.+.+.|..++. ...+.| ...+.. |+.+-+..+++.- .++
T Consensus 7 ~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L-~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 85 (256)
T 2etb_A 7 FSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCL-MKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTD 85 (256)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHH-HHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHH-HHHHHccccchHHHHHHHHhcCCcccchhhhccccccc
Confidence 3345666777666666666666654443 223333 333333 6666555555442 110
Q ss_pred --cchhhHHHHHHHhcCchhHHHHHhccCC
Q 038758 130 --FLVNNSLIDFYAKCRYLKVSHCKFSKIK 157 (354)
Q Consensus 130 --~~~~~~li~~~~~~~~~~~a~~~~~~~~ 157 (354)
... .+.+...+..|+.+-+..+++.-.
T Consensus 86 ~d~~g-~t~L~~A~~~g~~~~v~~Ll~~ga 114 (256)
T 2etb_A 86 EFYQG-HSALHIAIEKRSLQCVKLLVENGA 114 (256)
T ss_dssp TTTTT-CCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred ccccC-CCHHHHHHHcCCHHHHHHHHHcCC
Confidence 112 233444455666666666665543
No 339
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=35.31 E-value=2.6e+02 Score=25.55 Aligned_cols=58 Identities=9% Similarity=0.020 Sum_probs=34.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcC
Q 038758 259 IISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLM 338 (354)
Q Consensus 259 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 338 (354)
.+....+.|++..|...|+.|...... .. .-...+.+++.+.|+.++|..+|+..
T Consensus 291 ~~r~Alr~~d~~~a~~~~~~l~~~~~~-~~------------------------r~~YW~~ra~~~~g~~~~a~~~~~~~ 345 (618)
T 1qsa_A 291 RVRMALGTGDRRGLNTWLARLPMEAKE-KD------------------------EWRYWQADLLLERGREAEAKEILHQL 345 (618)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSCTTGGG-SH------------------------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHccccccc-cH------------------------hHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444668888888888777542111 11 11334556666677777777777766
Q ss_pred CCC
Q 038758 339 PHK 341 (354)
Q Consensus 339 ~~~ 341 (354)
..+
T Consensus 346 a~~ 348 (618)
T 1qsa_A 346 MQQ 348 (618)
T ss_dssp HTS
T ss_pred hcC
Confidence 553
No 340
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=35.14 E-value=64 Score=21.04 Aligned_cols=39 Identities=21% Similarity=0.030 Sum_probs=29.1
Q ss_pred chhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHHHHHH
Q 038758 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVVDALD 274 (354)
Q Consensus 236 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 274 (354)
...+.|..+++.++......|..++.++...|+..-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 356777777887777777889999999877677655543
No 341
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=34.62 E-value=2.1e+02 Score=24.12 Aligned_cols=24 Identities=4% Similarity=0.021 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 038758 256 WNSIISAFVRSGQVVDALDLLRDV 279 (354)
Q Consensus 256 ~~~li~~~~~~g~~~~a~~~~~~m 279 (354)
+..++..+.+....+....+|++-
T Consensus 141 ~l~vl~~~~k~~G~~~l~~l~~~s 164 (364)
T 3l6a_A 141 FLLCLQQLAKLQDREWLTELFQQS 164 (364)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHc
Confidence 334445556666666666666543
No 342
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=33.20 E-value=1.5e+02 Score=22.63 Aligned_cols=63 Identities=13% Similarity=0.193 Sum_probs=39.5
Q ss_pred HHHHHHH---hcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCC-----hhhHHHHHHHHHHhccC
Q 038758 35 SMMGMYN---VLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKD-----YRVGKDVYDYMISIKFE 97 (354)
Q Consensus 35 ~li~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~m~~~~~~ 97 (354)
.+|+++. |..+.+.|+-++.+|.+.|-.|.-..=..++-+.-.-|. ...|...++.....|.+
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3445544 558999999999999998866655544444444444442 33455566666666643
No 343
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Probab=32.43 E-value=2.1e+02 Score=23.48 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhhhcCCCCCcchHHHHHH
Q 038758 179 EVTNLLDEMEMIQTDMQPNTISLSGVLA 206 (354)
Q Consensus 179 ~a~~~~~~m~~~~~~~~p~~~t~~~ll~ 206 (354)
-|..+.+.|+ |...|..++..++-
T Consensus 248 ~A~~L~~am~----g~Gtd~~~Liriiv 271 (315)
T 1dm5_A 248 FAERLHHAMK----GLGTSDKTLIRILV 271 (315)
T ss_dssp HHHHHHHHHC----TTCCCHHHHHHHHH
T ss_pred HHHHHHHHhh----cCCCCHHHHhHHHH
Confidence 4666777775 45556655555443
No 344
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=32.10 E-value=50 Score=22.91 Aligned_cols=49 Identities=10% Similarity=0.051 Sum_probs=38.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccC
Q 038758 258 SIISAFVRSGQVVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQ 306 (354)
Q Consensus 258 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~ 306 (354)
.++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-+..
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 63 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDT 63 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEE
Confidence 4566666677778899999999888777788888888888888886544
No 345
>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form, FULL-length protein comprising protein core and N-terminal domain, metal; 1.80A {Sus scrofa} SCOP: a.65.1.1 PDB: 1mcx_A 1ain_A 1bo9_A
Probab=31.82 E-value=2.3e+02 Score=23.69 Aligned_cols=151 Identities=10% Similarity=0.007 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHhCCCcCCcccHHHHHHHHhccC--ChhhHHHHHHHHHHhccCC-----CceehhhHHHHHHhcCChhHH
Q 038758 47 EEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK--DYRVGKDVYDYMISIKFEG-----NACVKRPLLDLFIKCGRMEIT 119 (354)
Q Consensus 47 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~a 119 (354)
+.|..+.+-|+ |.-.|..+. |..++... +.....+.|..+-...+.- ....|..++-++....-...|
T Consensus 46 ~Da~~L~kA~k--g~GtDE~~i---I~IL~~rs~~Qr~~I~~~Y~~~~g~dL~~~lkselsG~fe~~l~~l~~~p~~~DA 120 (346)
T 1hm6_A 46 SDVEALHKAIT--VKGVDEATI---IEILTKRTNAQRQQIKAAYLQEKGKPLDEALKKALTGHLEEVALALLKTPAQFDA 120 (346)
T ss_dssp HHHHHHHHHHS--STTCCHHHH---HHHHHTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHhcc--CCCCCHHHH---HHHHhcCCHHHHHHHHHHHHHHHCccHHHHHHHhcCccHHHHHHHHhCCcHHHHH
Confidence 45666666664 434555444 33333332 3333444444443222110 122344555555554445556
Q ss_pred HHHHHhhccccchhhHHHHHHHhcCc--hhHHHHHhccCCCCC---------hhhhHHHHHHHHhCCCh-----------
Q 038758 120 SGLFEEMDQDFLVNNSLIDFYAKCRY--LKVSHCKFSKIKQKD---------LVSWNAMLAGYALGGFR----------- 177 (354)
Q Consensus 120 ~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~---------~~~~~~li~~~~~~~~~----------- 177 (354)
..+.+.|+....-...|+..++...+ .....+.|+.+-..+ +-.|..++.+++...+.
T Consensus 121 ~~L~~AmkG~GTde~~LieIL~~Rsn~q~~~Ik~aY~~~y~~~Le~di~se~sG~f~~ll~~L~~~~R~e~~~vd~~~a~ 200 (346)
T 1hm6_A 121 DELRAAMKGLGTDEDTLNEILASRTNREIREINRVYKEELKRDLAKDITSDTSGDYQKALLSLAKGDRSEDLAINDDLAD 200 (346)
T ss_dssp HHHHHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHHHHHTSCCCHHHHHHHHCCHHHHHHHHHHHTTCCCCCCSCCHHHHH
T ss_pred HHHHHHhhccCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhchhHHHHHhhccCCcHHHHHHHHhhccccccCCCCchHHH
Confidence 66666666555556778887776543 344555555544321 12366677777765432
Q ss_pred hHHHHHHHHHHhhhcCCCCCcchHHHHH
Q 038758 178 EEVTNLLDEMEMIQTDMQPNTISLSGVL 205 (354)
Q Consensus 178 ~~a~~~~~~m~~~~~~~~p~~~t~~~ll 205 (354)
.+|..+++.+ ..+...|..++..++
T Consensus 201 ~DA~~L~~A~---~~~~Gtde~~li~IL 225 (346)
T 1hm6_A 201 TDARALYEAG---ERRKGTDLNVFITIL 225 (346)
T ss_dssp HHHHHHHHHT---TTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHH---hccCCCcHHHHHHHH
Confidence 3566666666 334445655555444
No 346
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=30.84 E-value=2.8e+02 Score=27.01 Aligned_cols=83 Identities=7% Similarity=-0.049 Sum_probs=53.4
Q ss_pred HHHHHHhcCChhHHHHHHHhhccccchhhHHHHHHHhcCchhHHHHHhccCCC----CC---------------------
Q 038758 106 LLDLFIKCGRMEITSGLFEEMDQDFLVNNSLIDFYAKCRYLKVSHCKFSKIKQ----KD--------------------- 160 (354)
Q Consensus 106 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~--------------------- 160 (354)
++..+...|..+-|.++..-++.+...--.+..+|...|++++|...|++.-. ++
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~ 895 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNL 895 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccch
Confidence 56667777888777776666655544444566778888999999998876642 00
Q ss_pred -hhhhHHHHHHHHhCCChhHHHHHHHHHH
Q 038758 161 -LVSWNAMLAGYALGGFREEVTNLLDEME 188 (354)
Q Consensus 161 -~~~~~~li~~~~~~~~~~~a~~~~~~m~ 188 (354)
..-|..++..|-+.+.++.+.++-+...
T Consensus 896 ~~~YY~hV~~LFE~~~a~~~vi~fA~lAI 924 (950)
T 4gq2_M 896 LSCYYLHLSKKLFEESAYIDALEFSLLAD 924 (950)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 0124556666666666666666655554
No 347
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=30.29 E-value=2.4e+02 Score=23.64 Aligned_cols=69 Identities=7% Similarity=0.162 Sum_probs=36.6
Q ss_pred hhhHHHHHHhcCChhHHHHHHHhhccccch---hhHHHHHHHhcC--chhHHHHHhccCCCCChhhhHHHHHHHH
Q 038758 103 KRPLLDLFIKCGRMEITSGLFEEMDQDFLV---NNSLIDFYAKCR--YLKVSHCKFSKIKQKDLVSWNAMLAGYA 172 (354)
Q Consensus 103 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~li~~~~ 172 (354)
...+|.=|...|+.++|...++++...... ...+|..-...+ .-+.+-.++..+. .+..+-..+..+|.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf~ 130 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTNDVEKSFD 130 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT-TTSCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-hCCCCHHHHHHHHH
Confidence 456677777788888888888887433221 122222222222 2234444555555 35555555555543
No 348
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=29.03 E-value=1.3e+02 Score=22.76 Aligned_cols=39 Identities=8% Similarity=-0.026 Sum_probs=25.9
Q ss_pred HhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccC
Q 038758 41 NVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELK 79 (354)
Q Consensus 41 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 79 (354)
.|..+.+.|+-.+.+|.+.|-.|.-..=..++-+.-.-|
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 456899999999999999886554443344444443333
No 349
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=28.88 E-value=1.1e+02 Score=19.60 Aligned_cols=35 Identities=11% Similarity=0.080 Sum_probs=24.1
Q ss_pred chhHHHHHHhcccCCCCcchHHHHHHHHHhcCCHH
Q 038758 236 GFVICSCSVFNQLSTRDVVVWNSIISAFVRSGQVV 270 (354)
Q Consensus 236 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 270 (354)
...+.|..+++.++......|..++.++.+.+...
T Consensus 50 t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 50 TQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp SHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH
T ss_pred ChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHH
Confidence 45566666676666666777888888887776543
No 350
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=28.71 E-value=1.6e+02 Score=21.07 Aligned_cols=20 Identities=10% Similarity=0.179 Sum_probs=8.8
Q ss_pred chHHHHHHHhhhhcCccccc
Q 038758 199 ISLSGVLAACAQVKGVKLGK 218 (354)
Q Consensus 199 ~t~~~ll~~~~~~~~~~~a~ 218 (354)
.+|.-++..+.+...+-...
T Consensus 157 i~~~Ef~~~~~~~~~~~~~l 176 (183)
T 1s6c_A 157 VTLDEFLESXQEDDNIMRSL 176 (183)
T ss_dssp ECHHHHHHHTTSCCHHHHHH
T ss_pred EeHHHHHHHHhcChHHHHHH
Confidence 44555555444443333333
No 351
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=28.59 E-value=77 Score=18.98 Aligned_cols=45 Identities=7% Similarity=-0.009 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhcc
Q 038758 33 WTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSEL 78 (354)
Q Consensus 33 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 78 (354)
++.++..++...-.+.++..+.+..+.| ..+..+|-.-.+.+++.
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 4667777777777888888888888777 45566666656555543
No 352
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=27.59 E-value=1.9e+02 Score=21.55 Aligned_cols=66 Identities=14% Similarity=0.175 Sum_probs=40.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCcC--CCHhhHHHHHHHhhccCcccCccccch-hHHHHHHHHHHhcCChhHHHHHhhc
Q 038758 262 AFVRSGQVVDALDLLRDVIVANVK--PNTVTIVSVLPACLKLAALPQGLGTGS-FVWNALIDMYGRCGAIQKSRKIFVL 337 (354)
Q Consensus 262 ~~~~~g~~~~a~~~~~~m~~~g~~--p~~~t~~~li~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~ 337 (354)
+|-+..++.+|...++.+.+..+. ||...- +=..+. -+-|. ..|+-+...+-..|+.++|...+..
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~--~~~ffv--------d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDAR--IQEMFV--------DPGDEEFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHH--HHTTSC--------CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccc--cceeee--------ccchHHHHHHHHHHHHHHhcCHHHhhhHhhh
Confidence 456789999999999999966554 332210 000000 11233 3455566677788999998887753
No 353
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.89 E-value=66 Score=22.01 Aligned_cols=44 Identities=5% Similarity=-0.176 Sum_probs=27.1
Q ss_pred HHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHh
Q 038758 51 NLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISI 94 (354)
Q Consensus 51 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 94 (354)
-+|+.+....+.|+...--.-|..+...++++.|.+++..+...
T Consensus 47 ~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 47 LLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 34555555556555443333344556778888888888777653
No 354
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.83 E-value=2.3e+02 Score=21.85 Aligned_cols=55 Identities=13% Similarity=0.090 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHcCcCCCHhhHHHHHHHhhccCcccCccccchhHHHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 269 VVDALDLLRDVIVANVKPNTVTIVSVLPACLKLAALPQGLGTGSFVWNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 269 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
.+.|+.+|+.+.+.-..|+. ..-.|.-+. --..+-.|.+.|.+++|.+++++...
T Consensus 88 LESAl~v~~~I~~e~~l~~~--l~e~i~~ll---------------k~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEA--VVESSRKLV---------------KEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHH--HHHHHHHHH---------------HHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhcCcHH--HHHHHHHHH---------------HHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 46788888888765322221 111111111 23456678999999999999988765
No 355
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=25.71 E-value=91 Score=18.17 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=20.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCcCCCH
Q 038758 264 VRSGQVVDALDLLRDVIVANVKPNT 288 (354)
Q Consensus 264 ~~~g~~~~a~~~~~~m~~~g~~p~~ 288 (354)
...|+.+.|+..+-+|...+..|+.
T Consensus 34 a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 34 AQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp TTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 3468899999999999887777763
No 356
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=25.26 E-value=2.8e+02 Score=22.69 Aligned_cols=169 Identities=10% Similarity=-0.014 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccccchhhhhhHhhhhhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcCCc-------------------
Q 038758 5 IQVHAHLIVCGVELCAFLGSQLLEVFCNWTSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDH------------------- 65 (354)
Q Consensus 5 ~~~~~~~~~~g~~~~~~~~~~li~~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~------------------- 65 (354)
..+.+.+++.|..++.. .-.+.+...+..|+.+-+..+++.-...|..|+.
T Consensus 66 ~~~v~~Ll~~g~~~~~~----------~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (364)
T 3ljn_A 66 VDTAKYLASVGEVHSLW----------HGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKH 135 (364)
T ss_dssp HHHHHHHHHHCCCCCCB----------TTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEE
T ss_pred HHHHHHHHHCCCCcccc----------CCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCC
Q ss_pred -ccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceeh--hhHHHHHHhcCChhHHHHHHHh--------hccccchhh
Q 038758 66 -FVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVK--RPLLDLFIKCGRMEITSGLFEE--------MDQDFLVNN 134 (354)
Q Consensus 66 -~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~--------~~~~~~~~~ 134 (354)
...+.|..++... ..-.++.+.+.+.|..++.... .+.+...+..|+.+-+..+++. +......-.
T Consensus 136 ~~g~t~L~~A~~~g---~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~ 212 (364)
T 3ljn_A 136 CKGQTALHWCVGLG---PEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN 212 (364)
T ss_dssp ESCCCHHHHHHHSC---GGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCC
T ss_pred CCCCCHHHHHHHcC---CchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCC
Q ss_pred HHHHHHHhcCchhHHHHHhccCCCCChhh--hHHHHHHHHhCCChhHHHHHHHH
Q 038758 135 SLIDFYAKCRYLKVSHCKFSKIKQKDLVS--WNAMLAGYALGGFREEVTNLLDE 186 (354)
Q Consensus 135 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~ 186 (354)
+.+...+..|+.+-+.-+++.-..++... -.+-+...++.|+.+-+.-+++.
T Consensus 213 t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 213 SHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp CTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHc
No 357
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=25.24 E-value=1.5e+02 Score=19.47 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhCCCcCCcccHHHHHHHHhccC
Q 038758 48 EIVNLFYLMIDKGVRPDHFVCPKVYKACSELK 79 (354)
Q Consensus 48 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 79 (354)
.+.++.+++..-|+.|+..+...++..|...+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 45667777777778887777777777766555
No 358
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=25.07 E-value=90 Score=21.87 Aligned_cols=50 Identities=14% Similarity=0.046 Sum_probs=38.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhhhcCCCCCcchHHHHHHHhhhhcCccc
Q 038758 165 NAMLAGYALGGFREEVTNLLDEMEMIQTDMQPNTISLSGVLAACAQVKGVKL 216 (354)
Q Consensus 165 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~t~~~ll~~~~~~~~~~~ 216 (354)
..++..+...++.-.|.++++.++ ..+...+..|.--.|+.+...|-+.+
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~--~~~~~is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLK--HKGDAVGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHH--HTTCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHH--HhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 356667777777889999999998 77777777777777788888776544
No 359
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=25.04 E-value=2.2e+02 Score=23.35 Aligned_cols=141 Identities=12% Similarity=0.118 Sum_probs=87.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC-C----CcCCcccHHHHH---HHHhccCChhhHHHHHHHHHHhccCCCceeh
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK-G----VRPDHFVCPKVY---KACSELKDYRVGKDVYDYMISIKFEGNACVK 103 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~-~----~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 103 (354)
-.|.+...+.-.-+-++|..+|..+... + ..|+.......+ ..+.+.-+ -++++.+.+.|+.|...++
T Consensus 151 Gm~~i~a~ll~~~~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~ 226 (331)
T 3qye_A 151 GLSFVAGILLLHMSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAA 226 (331)
T ss_dssp THHHHHHHHHTTSCHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSH
T ss_pred cHHHHHHHHHHHhhHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHH
Confidence 4455555555555677889998887654 2 234443322222 22222222 3688888889999988888
Q ss_pred hhHHHHHHhcCChhHHHHHHHhh--ccccchhh---HHHHH----HHhcCchhHHHHHhcc-CCCCChhhhHHHHHHHHh
Q 038758 104 RPLLDLFIKCGRMEITSGLFEEM--DQDFLVNN---SLIDF----YAKCRYLKVSHCKFSK-IKQKDLVSWNAMLAGYAL 173 (354)
Q Consensus 104 ~~li~~~~~~g~~~~a~~~~~~~--~~~~~~~~---~li~~----~~~~~~~~~a~~~~~~-~~~~~~~~~~~li~~~~~ 173 (354)
.=++..+.+.=.++.+.++|+.+ ......+. +++.. ..+..++++....++. .+..+......++.-...
T Consensus 227 ~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~~~~~di~~li~~A~~ 306 (331)
T 3qye_A 227 PWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQMEKTINQVFE 306 (331)
T ss_dssp HHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHh
Confidence 88999999988899999999988 22222221 12222 2334588899998887 444455556666655555
Q ss_pred CCC
Q 038758 174 GGF 176 (354)
Q Consensus 174 ~~~ 176 (354)
...
T Consensus 307 l~~ 309 (331)
T 3qye_A 307 MDI 309 (331)
T ss_dssp CCC
T ss_pred CCc
Confidence 544
No 360
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=24.42 E-value=1.1e+02 Score=25.31 Aligned_cols=162 Identities=8% Similarity=0.114 Sum_probs=92.0
Q ss_pred hhhhhHhhhhh----------hHHHHHHHHHhcCChhHHHHHHHHHHhCC-----CcCCcccHH---HHHHHHhccCChh
Q 038758 21 FLGSQLLEVFC----------NWTSMMGMYNVLGYYEEIVNLFYLMIDKG-----VRPDHFVCP---KVYKACSELKDYR 82 (354)
Q Consensus 21 ~~~~~li~~~~----------~y~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~---~ll~~~~~~~~~~ 82 (354)
.....++.+|+ -.|.+...+.-.-+-++|.-+|..+.+.- ..++..... ..+..+.+.-+
T Consensus 135 ~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~~E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-- 212 (334)
T 2qq8_A 135 DMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENL-- 212 (334)
T ss_dssp HHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHSCHHHHHHHHHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHC--
Confidence 33445555565 34555555554456677888887776532 234433222 22333333222
Q ss_pred hHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhHHHHHHHhh--ccccchhh---HHHHHH---HhcCchhHHHHHhc
Q 038758 83 VGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEITSGLFEEM--DQDFLVNN---SLIDFY---AKCRYLKVSHCKFS 154 (354)
Q Consensus 83 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--~~~~~~~~---~li~~~---~~~~~~~~a~~~~~ 154 (354)
-++++.+.+.|+.|...++.=++..+++.=.++.+.++++-+ ..+...+. +++..+ ....++++....++
T Consensus 213 --P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~l~~valaiL~~~~~~Ll~~d~~~il~~L~ 290 (334)
T 2qq8_A 213 --PKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDILTKMDFIHMAQFLT 290 (334)
T ss_dssp --HHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTHHHHHTCCHHHHHHHHH
T ss_pred --HHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 357788888899998888888888888888899999999988 22222221 122211 12246888888888
Q ss_pred cCCCCChhhhHHHHHHHHhCC---ChhHHHHHHHHHH
Q 038758 155 KIKQKDLVSWNAMLAGYALGG---FREEVTNLLDEME 188 (354)
Q Consensus 155 ~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~ 188 (354)
.++.. ..-..++....... +..+-.++++.++
T Consensus 291 ~lp~~--~d~~~l~~~a~~l~~~~~~k~~~~~~~~~~ 325 (334)
T 2qq8_A 291 RLPED--LPAEELFASIATIQMQSRNKKWAQVLTALQ 325 (334)
T ss_dssp SCCTT--CCHHHHHHHHHHCCCEETTEEHHHHHHHHH
T ss_pred hCCCc--CCHHHHHHHHHHccCcHHHhhHHHHHHHHH
Confidence 87642 23344454433322 1223345555554
No 361
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=23.96 E-value=2.4e+02 Score=24.83 Aligned_cols=83 Identities=10% Similarity=0.040 Sum_probs=38.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCCh
Q 038758 37 MGMYNVLGYYEEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRM 116 (354)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 116 (354)
...+...|++++|..+-...+. |+--+..|.+.+-..=...|+..-..++|..+.+.| ..+..----+++.-...|+.
T Consensus 368 F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~ 445 (494)
T 1bpo_A 368 FNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESLELCRPVLQQGRK 445 (494)
T ss_dssp HHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHhhHHhHHHHhccHH
Confidence 3344455666666665555443 333344444444443334445555555555555554 33332222334444444444
Q ss_pred hHHHH
Q 038758 117 EITSG 121 (354)
Q Consensus 117 ~~a~~ 121 (354)
+-.+.
T Consensus 446 ~llek 450 (494)
T 1bpo_A 446 QLLEK 450 (494)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 43333
No 362
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=23.41 E-value=1.1e+02 Score=17.13 Aligned_cols=14 Identities=14% Similarity=-0.069 Sum_probs=7.1
Q ss_pred CCChhHHHHHHHHH
Q 038758 174 GGFREEVTNLLDEM 187 (354)
Q Consensus 174 ~~~~~~a~~~~~~m 187 (354)
.|+.+.|.+++-.|
T Consensus 31 ~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 31 NNDLDLTIGLLLKE 44 (49)
T ss_dssp TTCSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhc
Confidence 45555555555444
No 363
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=23.23 E-value=1.9e+02 Score=26.03 Aligned_cols=70 Identities=10% Similarity=0.081 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHhCCCcCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCceehhhHHHHHHhcCChhH
Q 038758 47 EEIVNLFYLMIDKGVRPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACVKRPLLDLFIKCGRMEI 118 (354)
Q Consensus 47 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 118 (354)
+.....++++..+-.--+...-..++..|.+.|-.+.|.++++.+-++- .-+...+ .-+..|+++|+++.
T Consensus 498 ~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~-l~~g~~g-eAL~~f~rA~~~~~ 567 (570)
T 3f3f_C 498 SAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQM-LSAHNII-ESIANFSRAGKYEL 567 (570)
T ss_dssp HHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-------------------------
T ss_pred hHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH-HHCccHH-HHHHHHHHcCChhh
Confidence 3344444444444222233445555666666666666666655554332 1122223 33344555555444
No 364
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=23.23 E-value=4.3e+02 Score=24.14 Aligned_cols=73 Identities=11% Similarity=0.028 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHHHcCcCCCHhhHHHHHH----HhhccC-cccCc--------cccchhHHHHHHHHHHhcCChhHHHH
Q 038758 267 GQVVDALDLLRDVIVANVKPNTVTIVSVLP----ACLKLA-ALPQG--------LGTGSFVWNALIDMYGRCGAIQKSRK 333 (354)
Q Consensus 267 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~----~~~~~~-~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~ 333 (354)
.+.+.|...|....+.+ ..+......+-. .....+ +.+.+ ...+.......+..-.+.|+++.|.+
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHCCCHHHHHH
Confidence 47899999998886543 233333222222 222333 22211 22334445556666678899999999
Q ss_pred HhhcCCC
Q 038758 334 IFVLMPH 340 (354)
Q Consensus 334 ~~~~m~~ 340 (354)
.|+.|..
T Consensus 307 ~~~~l~~ 313 (618)
T 1qsa_A 307 WLARLPM 313 (618)
T ss_dssp HHHHSCT
T ss_pred HHHHccc
Confidence 9999986
No 365
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=22.96 E-value=1.1e+02 Score=17.13 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHHHHcCcCCCHh
Q 038758 267 GQVVDALDLLRDVIVANVKPNTV 289 (354)
Q Consensus 267 g~~~~a~~~~~~m~~~g~~p~~~ 289 (354)
.++..|+++++.+.+.|--|+..
T Consensus 7 RDv~RaiELle~lq~sgevp~~K 29 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVNNAK 29 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSSTHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcHH
Confidence 46788999999999888777653
No 366
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=22.91 E-value=3e+02 Score=22.18 Aligned_cols=112 Identities=7% Similarity=0.009 Sum_probs=56.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCcCCcc----cHHHHHHHHhccCChhhHHHHHHHHHHhccCCCcee--hhhHH
Q 038758 34 TSMMGMYNVLGYYEEIVNLFYLMIDKGVRPDHF----VCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV--KRPLL 107 (354)
Q Consensus 34 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li 107 (354)
++.+..-++.|+++-+..++ +.|..||.. -++.|.. .+..|+.+ +.+.+.+.|..|+... ....+
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL----~~Gadvn~~~~~~g~TpLh~-A~~~g~~~----iv~~Ll~~ga~~~~~~~~~~~~~ 96 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHN-AVQMSRED----IVELLLRHGADPVLRKKNGATPF 96 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHH----HHTCCTTCCCTTTCCCHHHH-HHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHH
T ss_pred ChHHHHHHHcCCHHHHHHHH----HCCCCCCccCCCCCcCHHHH-HHHcCCHH----HHHHHHHcCCchhhhccCCCchh
Confidence 44555567889887666555 456666543 2344443 44566654 5555667776655432 22233
Q ss_pred HHHHhcCChhHHHHHHHhh----ccccchhhHHHHHHHhcCchhHHHHHhcc
Q 038758 108 DLFIKCGRMEITSGLFEEM----DQDFLVNNSLIDFYAKCRYLKVSHCKFSK 155 (354)
Q Consensus 108 ~~~~~~g~~~~a~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 155 (354)
......+.......+...- ..+..-++. +...+..|..+-+..+++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~-l~~A~~~~~~~~~~~ll~~ 147 (337)
T 4g8k_A 97 ILAAIAGSVKLLKLFLSKGADVNECDFYGFTA-FMEAAVYGKVKALKFLYKR 147 (337)
T ss_dssp HHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBH-HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHhcccchhhHHhhhccchhhhhccCCCCH-HHHHHHcCcHHHHHHHHHc
Confidence 3344444444444333332 112222233 3344556666666666554
No 367
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=22.89 E-value=2.6e+02 Score=21.52 Aligned_cols=33 Identities=6% Similarity=0.263 Sum_probs=17.6
Q ss_pred hHHHHHHHHHhc--CChhHHHHHHHHHHhCCCcCC
Q 038758 32 NWTSMMGMYNVL--GYYEEIVNLFYLMIDKGVRPD 64 (354)
Q Consensus 32 ~y~~li~~~~~~--~~~~~a~~~~~~m~~~~~~p~ 64 (354)
-+.++.++|... +++.+-.++++.+...++.-.
T Consensus 19 yf~~~c~aFR~~r~~dFrq~rdi~eall~~~l~~~ 53 (235)
T 3bu8_A 19 YFHEALRAFRGSRYGDFRQIRDIMQALLVRPLGKE 53 (235)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHhCccccc
Confidence 455666666532 445556666666655554433
No 368
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=21.97 E-value=44 Score=24.45 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 038758 33 WTSMMGMYNVLGYYEEIVNLFYLMI 57 (354)
Q Consensus 33 y~~li~~~~~~~~~~~a~~~~~~m~ 57 (354)
...+|.-|...|+.++|...++++.
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3567888889999999999999976
No 369
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=21.51 E-value=1.4e+02 Score=18.59 Aligned_cols=38 Identities=5% Similarity=0.274 Sum_probs=26.5
Q ss_pred HHhcccC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038758 243 SVFNQLS--TRDVVVWNSIISAFVRSGQVVDALDLLRDVI 280 (354)
Q Consensus 243 ~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 280 (354)
.++++++ .|++.||+-+...+-+..-..+++.+.+++-
T Consensus 24 ~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~iy 63 (81)
T 2ko4_A 24 QLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEVY 63 (81)
T ss_dssp HHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHHH
T ss_pred HHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4555655 7899999988877666655666776666553
No 370
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=21.15 E-value=2e+02 Score=19.41 Aligned_cols=28 Identities=4% Similarity=-0.078 Sum_probs=15.0
Q ss_pred CcccHHHHHHHHhccCChhhHHHHHHHHH
Q 038758 64 DHFVCPKVYKACSELKDYRVGKDVYDYMI 92 (354)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 92 (354)
++.++...++...+.|-++.. +.+..|.
T Consensus 52 ~~~s~rd~~r~a~~~glI~~~-~~w~~m~ 79 (119)
T 1wty_A 52 EARSPRAAIRGAFQVGLLPED-PFWLEML 79 (119)
T ss_dssp CCSSHHHHHHHHHHHTSSCCC-HHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCCcH-HHHHHHH
Confidence 355566666666666655444 3444444
No 371
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=20.78 E-value=71 Score=25.63 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=23.9
Q ss_pred HHHHHHHHHhcCChhHHHHHhhcCCC
Q 038758 315 WNALIDMYGRCGAIQKSRKIFVLMPH 340 (354)
Q Consensus 315 ~~~li~~~~~~g~~~~A~~~~~~m~~ 340 (354)
-|.+++.|..+|+++.|.++++.++.
T Consensus 37 ~n~l~R~FL~~gkl~AAr~l~~rlp~ 62 (270)
T 3cqc_A 37 GNAIMRKFLASKKHEAAKEVFVKIPQ 62 (270)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHCCh
Confidence 57899999999999999999999875
No 372
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=20.78 E-value=2.9e+02 Score=21.26 Aligned_cols=83 Identities=6% Similarity=-0.058 Sum_probs=39.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC-C-cCCcccHHHHHHHHhccCChhhHHHHHHHHHHhccCCCcee--hhhHHHHHHh
Q 038758 37 MGMYNVLGYYEEIVNLFYLMIDKG-V-RPDHFVCPKVYKACSELKDYRVGKDVYDYMISIKFEGNACV--KRPLLDLFIK 112 (354)
Q Consensus 37 i~~~~~~~~~~~a~~~~~~m~~~~-~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~ 112 (354)
+...++.|+.+-+..+++.-.... + ..+....+.|. ..+..|+.+ +++.+.+.|..++... -.+.+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~-~A~~~g~~~----~v~~Ll~~ga~~~~~~~~g~tpL~~A~~ 87 (282)
T 1oy3_D 13 LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALH-LAAILGEAS----TVEKLYAAGAGVLVAERGGHTALHLACR 87 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHH-HHHHHTCHH----HHHHHHHTTCCSSCCCTTSCCHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHH-HHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 344556777766555554422100 1 12222333443 334555554 4444556676655432 1234455556
Q ss_pred cCChhHHHHHHH
Q 038758 113 CGRMEITSGLFE 124 (354)
Q Consensus 113 ~g~~~~a~~~~~ 124 (354)
.|..+-+..+++
T Consensus 88 ~~~~~~v~~Ll~ 99 (282)
T 1oy3_D 88 VRAHTCACVLLQ 99 (282)
T ss_dssp TTCHHHHHHHSS
T ss_pred cCCcchhHhhhc
Confidence 677666655554
No 373
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=20.73 E-value=1.1e+02 Score=24.53 Aligned_cols=28 Identities=11% Similarity=0.077 Sum_probs=24.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038758 32 NWTSMMGMYNVLGYYEEIVNLFYLMIDK 59 (354)
Q Consensus 32 ~y~~li~~~~~~~~~~~a~~~~~~m~~~ 59 (354)
-=|.|++.|...|+++.|.++++.+...
T Consensus 36 ~~n~l~R~FL~~gkl~AAr~l~~rlp~~ 63 (270)
T 3cqc_A 36 QGNAIMRKFLASKKHEAAKEVFVKIPQD 63 (270)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHCChH
Confidence 4589999999999999999999986543
Done!