Your job contains 1 sequence.
>038761
MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA
AKLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTI
DGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLH
ELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL
IERKLIFSLPFHGGRSCSIGSITHTVKADGVPNSTLSSDLDVTLDPNFIQKSMSVSSPVL
EHGEDGKDSMAAKRATVTSSYLLCNRVRVYTRIPDIAFPKGITLMPISEDKWVAVSLEFP
NEEGN
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 038761
(365 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2081620 - symbol:DRB4 "double-stranded-RNA-bin... 264 7.8e-23 1
TAIR|locus:2829928 - symbol:DRB3 "dsRNA-binding protein 3... 249 3.0e-21 1
TAIR|locus:2057491 - symbol:DRB2 "dsRNA-binding protein 2... 247 1.5e-20 1
TAIR|locus:2163016 - symbol:DRB5 "dsRNA-binding protein 5... 243 5.0e-20 1
TAIR|locus:2024407 - symbol:HYL1 "HYPONASTIC LEAVES 1" sp... 187 4.3e-12 1
UNIPROTKB|Q0IQN6 - symbol:DRB8 "Double-stranded RNA-bindi... 182 1.7e-11 1
>TAIR|locus:2081620 [details] [associations]
symbol:DRB4 "double-stranded-RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA;ISS;IDA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=RCA;IMP] [GO:0060145 "viral gene silencing in virus
induced gene silencing" evidence=IMP] [GO:0035196 "production of
miRNAs involved in gene silencing by miRNA" evidence=RCA;IMP]
[GO:0070919 "production of siRNA involved in chromatin silencing by
small RNA" evidence=IMP] [GO:0051607 "defense response to virus"
evidence=RCA] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0019048 Gene3D:3.30.160.20
EMBL:AL162651 GO:GO:0003725 GO:GO:0010267 GO:GO:0035196
GO:GO:0070919 EMBL:AB455097 EMBL:AY074363 EMBL:AY150509
IPI:IPI00529941 IPI:IPI00914309 PIR:T48069 RefSeq:NP_001154686.1
RefSeq:NP_191839.2 RefSeq:NP_974480.1 UniGene:At.34049
ProteinModelPortal:Q8H1D4 SMR:Q8H1D4 IntAct:Q8H1D4 STRING:Q8H1D4
PaxDb:Q8H1D4 PRIDE:Q8H1D4 EnsemblPlants:AT3G62800.1
EnsemblPlants:AT3G62800.2 GeneID:825455 KEGG:ath:AT3G62800
TAIR:At3g62800 eggNOG:NOG306267 HOGENOM:HOG000072681
InParanoid:Q8H1D4 OMA:YANEREG PhylomeDB:Q8H1D4
ProtClustDB:CLSN2690620 Genevestigator:Q8H1D4 GO:GO:0060145
Uniprot:Q8H1D4
Length = 355
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 63/142 (44%), Positives = 80/142 (56%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK LQ YA + NL+ P+Y++ REGP HA F+ VT G TF+S EFF LK AEHAAA
Sbjct: 5 YKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAAA 64
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
K+A+ SL E I V YKN+L E++ +E +P Y T G H
Sbjct: 65 KIAVASLTPQS-PEGI-------------DVAYKNLLQEIAQKESSLLPFYATATSGPSH 110
Query: 203 MPTFISMVEVDGEVFYGKAGRT 224
PTF S VE G+VF G+ +T
Sbjct: 111 APTFTSTVEFAGKVFSGEEAKT 132
Score = 174 (66.3 bits), Expect = 9.2e-11, P = 9.2e-11
Identities = 45/149 (30%), Positives = 71/149 (47%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLXXXXXXXXXXXXXXQNDA 60
+YK ++Q Q LP Y+ ++G H PRF+ +V+ G ++ A
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 61 AKLAFLHFTSXXXXXXXNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTI 120
AK+A T + YK++LQ A++++ P Y++ GP+HA +F + V
Sbjct: 64 AKIAVASLTPQSPE---GIDVAYKNLLQEIAQKESSLLPFYATATSGPSHAPTFTSTVEF 120
Query: 121 DGHTFESLEFFKNLKQAEHAAAKVALFSL 149
G F E K K AE +AAKVA S+
Sbjct: 121 AGKVFSGEEA-KTKKLAEMSAAKVAFMSI 148
>TAIR|locus:2829928 [details] [associations]
symbol:DRB3 "dsRNA-binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 EMBL:CP002686 GenomeReviews:BA000014_GR
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725 HOGENOM:HOG000243232
EMBL:BT012284 EMBL:AP000602 EMBL:AK222128 IPI:IPI00525256
RefSeq:NP_001030779.2 RefSeq:NP_189329.3 UniGene:At.37133
ProteinModelPortal:Q9LJF5 SMR:Q9LJF5 STRING:Q9LJF5
EnsemblPlants:AT3G26932.1 EnsemblPlants:AT3G26932.2 GeneID:822310
KEGG:ath:AT3G26932 TAIR:At3g26932 eggNOG:NOG246955
InParanoid:Q2V3S2 OMA:SSVERNC PhylomeDB:Q9LJF5
ProtClustDB:CLSN2680394 Genevestigator:Q9LJF5 Uniprot:Q9LJF5
Length = 359
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 59/142 (41%), Positives = 85/142 (59%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R P Y+ REGP HA FKA V +G FES + L+QAEH+AA
Sbjct: 2 YKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL +L+ ++ L A V L + G+ YKN+L E + R GL +P+Y +++ G H
Sbjct: 62 EVALSALSSKGPSKS--LTARV---LDETGI-YKNLLQETAHRAGLDLPVYTSVRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRT 224
+PTF VE+ G F G++ +T
Sbjct: 116 IPTFSCTVELAGMSFNGESAKT 137
Score = 230 (86.0 bits), Expect = 8.8e-18, P = 8.8e-18
Identities = 56/154 (36%), Positives = 79/154 (51%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLXXXXXXXXXXXXXXQNDA 60
MYK ++QEL + +SLP Y+ ++G DH PRFK+SV+ NG ++ A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 61 AKLAFLHFTSXXXXXXXNVQCR-----YKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
A++A +S + YK++LQ A R LD P+Y+S+R GP H +F
Sbjct: 61 AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V + G +F E K KQAE AA A FSL
Sbjct: 121 CTVELAGMSFNG-ESAKTKKQAEKNAAIAAWFSL 153
>TAIR|locus:2057491 [details] [associations]
symbol:DRB2 "dsRNA-binding protein 2" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS;IDA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0035196 "production of
miRNAs involved in gene silencing by miRNA" evidence=RCA;IMP]
[GO:0070919 "production of siRNA involved in chromatin silencing by
small RNA" evidence=IMP] [GO:0010267 "production of ta-siRNAs
involved in RNA interference" evidence=RCA] [GO:0051607 "defense
response to virus" evidence=RCA] InterPro:IPR001159 Pfam:PF00035
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 GO:GO:0005737
EMBL:CP002685 GenomeReviews:CT485783_GR Gene3D:3.30.160.20
GO:GO:0003725 EMBL:AC006283 GO:GO:0035196 EMBL:AY034976
EMBL:AY062965 IPI:IPI00547657 PIR:B84684 RefSeq:NP_565672.1
UniGene:At.13732 ProteinModelPortal:Q9SKN2 SMR:Q9SKN2 IntAct:Q9SKN2
STRING:Q9SKN2 PRIDE:Q9SKN2 EnsemblPlants:AT2G28380.1 GeneID:817386
KEGG:ath:AT2G28380 TAIR:At2g28380 eggNOG:NOG291691
HOGENOM:HOG000243232 InParanoid:Q9SKN2 OMA:PCHSMAP PhylomeDB:Q9SKN2
ProtClustDB:CLSN2688512 Genevestigator:Q9SKN2 GO:GO:0070919
Uniprot:Q9SKN2
Length = 434
Score = 247 (92.0 bits), Expect = 1.5e-20, P = 1.5e-20
Identities = 62/170 (36%), Positives = 91/170 (53%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ IREGP HA FKA V +G FES ++ L+QAEH+AA
Sbjct: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL +L+ + L A + L + GV YKN+L E++ R G P+P Y T + G H
Sbjct: 62 EVALNALSNRGPSHS--LAARI---LDETGV-YKNLLQEIAQRVGAPLPRYTTFRSGLGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTXXXXXXXXXXXXYTAL--IERKLIFSLP 250
P F VE+ G F G + +++L + ++ S+P
Sbjct: 116 QPVFTGTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMP 165
Score = 182 (69.1 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 49/154 (31%), Positives = 75/154 (48%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLXXXXXXXXXXXXXXQNDA 60
MYK ++QEL + ++LP Y+ +++G DH PRFK++V+ NG ++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 61 AKLAFLHFTSXXXXXXXNVQCR-----YKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
A++A ++ + YK++LQ A+R P Y++ R G H F
Sbjct: 61 AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V + G TF + KN KQAE AA A SL
Sbjct: 121 GTVELAGITFTG-DPAKNKKQAEKNAAMAAWSSL 153
>TAIR|locus:2163016 [details] [associations]
symbol:DRB5 "dsRNA-binding protein 5" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS;IDA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0005515 "protein binding" evidence=IPI] [GO:0010267 "production
of ta-siRNAs involved in RNA interference" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0051607 "defense response to virus"
evidence=RCA] InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 EMBL:CP002688
GenomeReviews:BA000015_GR Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 HOGENOM:HOG000243232 ProtClustDB:CLSN2680394
EMBL:AB010072 EMBL:AK117808 EMBL:BT009653 IPI:IPI00534111
RefSeq:NP_198923.2 UniGene:At.30254 ProteinModelPortal:Q8GY79
SMR:Q8GY79 IntAct:Q8GY79 STRING:Q8GY79 EnsemblPlants:AT5G41070.1
GeneID:834109 KEGG:ath:AT5G41070 TAIR:At5g41070 eggNOG:NOG295240
InParanoid:Q8GY79 OMA:LRWINLL PhylomeDB:Q8GY79
Genevestigator:Q8GY79 Uniprot:Q8GY79
Length = 393
Score = 243 (90.6 bits), Expect = 5.0e-20, P = 5.0e-20
Identities = 57/158 (36%), Positives = 88/158 (55%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ IREGP HA FKA V +G FES + L+QAEHAAA
Sbjct: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+V+L L+ +++ + L + G+ YKN+L E + R GL +P+Y +++ G+ H
Sbjct: 62 EVSLNVLSSRVPSKSL-----TAKILDETGI-YKNLLQETAHRAGLDLPMYTSVRSGSCH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTXXXXXXXXXXXXYTAL 240
P F VE+ G F G++ +T +++L
Sbjct: 116 FPGFSCTVELAGMTFTGESAKTKKQAEKNAAIAAWSSL 153
Score = 208 (78.3 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 53/154 (34%), Positives = 77/154 (50%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLXXXXXXXXXXXXXXQNDA 60
MYK ++QEL + ++LP Y+ +++G DH PRFK+SV+ NG ++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 61 AKLAFLHFTSXXXXXXXNVQCR-----YKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
A+++ +S + YK++LQ A R LD P+Y+S+R G H F
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V + G TF E K KQAE AA A SL
Sbjct: 121 CTVELAGMTFTG-ESAKTKKQAEKNAAIAAWSSL 153
>TAIR|locus:2024407 [details] [associations]
symbol:HYL1 "HYPONASTIC LEAVES 1" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA;IDA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0009733
"response to auxin stimulus" evidence=IMP] [GO:0009735 "response to
cytokinin stimulus" evidence=IMP] [GO:0009737 "response to abscisic
acid stimulus" evidence=IMP] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA;IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0035279 "mRNA cleavage involved
in gene silencing by miRNA" evidence=IMP] [GO:0031054 "pre-miRNA
processing" evidence=IMP] [GO:0010267 "production of ta-siRNAs
involved in RNA interference" evidence=RCA;IMP] [GO:0015030 "Cajal
body" evidence=IDA] [GO:0035198 "miRNA binding" evidence=IDA]
[GO:0010445 "nuclear dicing body" evidence=IDA] [GO:0051607
"defense response to virus" evidence=RCA] [GO:0010305 "leaf
vascular tissue pattern formation" evidence=IMP] [GO:0010589 "leaf
proximal/distal pattern formation" evidence=IMP] InterPro:IPR001159
Pfam:PF00035 PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0009735
GO:GO:0009733 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0035198
GO:GO:0035279 GO:GO:0031054 GO:GO:0010267 GO:GO:0010305
EMBL:AC000132 EMBL:AF276440 EMBL:AY054631 EMBL:AY081525
EMBL:AK319123 IPI:IPI00525041 IPI:IPI00975255 PIR:H86230
RefSeq:NP_563850.1 UniGene:At.10223 PDB:2L2M PDB:2L2N PDB:3ADG
PDB:3ADI PDB:3ADJ PDBsum:2L2M PDBsum:2L2N PDBsum:3ADG PDBsum:3ADI
PDBsum:3ADJ ProteinModelPortal:O04492 SMR:O04492 DIP:DIP-33453N
IntAct:O04492 STRING:O04492 PaxDb:O04492 PRIDE:O04492
EnsemblPlants:AT1G09700.1 GeneID:837498 KEGG:ath:AT1G09700
TAIR:At1g09700 eggNOG:NOG237225 InParanoid:O04492 OMA:CMNGLKE
ProtClustDB:CLSN2916994 EvolutionaryTrace:O04492
Genevestigator:O04492 GO:GO:0010445 GO:GO:0010589 Uniprot:O04492
Length = 419
Score = 187 (70.9 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 52/143 (36%), Positives = 78/143 (54%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P+Y ++EGP+H F++ V +DG + SL F N K AE +AA
Sbjct: 16 FKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAA 75
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL LA ++ L VS + + G+ KN+L E + + +PLY+ K
Sbjct: 76 EVALRELA-----KSSELSQCVSQPVHETGLC-KNLLQEYAQKMNYAIPLYQCQKVETLG 129
Query: 203 MPT-FISMVEVDGEVFYGKAGRT 224
T F VE+ G + G A RT
Sbjct: 130 RVTQFTCTVEIGGIKYTGAATRT 152
Score = 115 (45.5 bits), Expect = 0.00067, P = 0.00067
Identities = 37/158 (23%), Positives = 66/158 (41%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLXXXXXXXXXXXXXXQNDA 60
++K+++QE + + P Y +K+G H F+S+V ++G+ + A
Sbjct: 15 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 74
Query: 61 AKLAFLHFTSXXXXXXXNVQCRY-----KSVLQNYARRKNLDSPLYSSIR-EGPAHACSF 114
A++A Q + K++LQ YA++ N PLY + E F
Sbjct: 75 AEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQF 134
Query: 115 KARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACD 152
V I G + + K AE +A + AL ++ D
Sbjct: 135 TCTVEIGGIKYTGAAT-RTKKDAEISAGRTALLAIQSD 171
>UNIPROTKB|Q0IQN6 [details] [associations]
symbol:DRB8 "Double-stranded RNA-binding protein 8"
species:39947 "Oryza sativa Japonica Group" [GO:0003725
"double-stranded RNA binding" evidence=IDA] InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725
GO:GO:0016075 EMBL:AP008218 GO:GO:0004525 EMBL:AB036988
EMBL:DQ009988 RefSeq:NP_001065960.1 UniGene:Os.3740
EnsemblPlants:LOC_Os12g01916.1 GeneID:4351288
KEGG:dosa:Os12t0109900-02 KEGG:osa:4351288 Gramene:Q0IQN6
HOGENOM:HOG000119022 OMA:TPKPLKV ProtClustDB:CLSN2695502
PANTHER:PTHR11207 Uniprot:Q0IQN6
Length = 424
Score = 182 (69.1 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 49/142 (34%), Positives = 78/142 (54%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P Y + +EGP+H FK+ V I+ +++SL F N K AE +AA
Sbjct: 34 FKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAA 93
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL + ++I A++ + + G+ KN+L E + + +P Y K +
Sbjct: 94 EVALMEIV-----KSIPANANIPA-VQETGLC-KNLLQEYAQKMNYAIPSYICTKSASGL 146
Query: 203 MPTFISMVEVDGEVFYGKAGRT 224
P FI VE+ G + G A RT
Sbjct: 147 AP-FICTVEIGGIQYIGAAART 167
Score = 126 (49.4 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 41/155 (26%), Positives = 65/155 (41%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLXXXXXXXXXXXXXXQNDA 60
++K+++QE + P Y T K+G H+P FKS+V +N + A
Sbjct: 33 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 61 AKLAFLHFTSXXXXXXX--NVQ----CRYKSVLQNYARRKNLDSPLYSSIREGPAHACSF 114
A++A + VQ C K++LQ YA++ N P Y + A F
Sbjct: 93 AEVALMEIVKSIPANANIPAVQETGLC--KNLLQEYAQKMNYAIPSYICTKSASGLA-PF 149
Query: 115 KARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V I G + + K AE AA+ AL ++
Sbjct: 150 ICTVEIGGIQYIGAAA-RTKKDAEIKAARTALLAI 183
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.134 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 365 332 0.00090 116 3 11 22 0.38 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 6
No. of states in DFA: 612 (65 KB)
Total size of DFA: 234 KB (2128 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.69u 0.12s 23.81t Elapsed: 00:00:01
Total cpu time: 23.69u 0.12s 23.81t Elapsed: 00:00:01
Start: Thu May 9 16:37:17 2013 End: Thu May 9 16:37:18 2013