BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038761
(365 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|357462125|ref|XP_003601344.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355490392|gb|AES71595.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 372
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 157/393 (39%), Positives = 212/393 (53%), Gaps = 55/393 (13%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQND 59
M+K+K+QELCH++RWSLP+YS DG H+P FK SV VNGL+F SS + SS E+QN
Sbjct: 1 MHKSKLQELCHRRRWSLPKYSAFHVDGPPHNPSFKGSVFVNGLTFTSSDTFNSSGEAQNQ 60
Query: 60 AAKLAFLHFTSP--------------------PPPPPPNVQ----CRYKSVLQNYARRKN 95
AA AF +FTSP P P +Q + + QN AR+ +
Sbjct: 61 AAMKAFRNFTSPLSSSSKPTNEHGSKEEVKAVKPQESPVLQQSPVIKSDTDHQNCARKND 120
Query: 96 LDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQ 155
LD P+++ EGP H +KA V IDG +FES F +K+AE AAAK
Sbjct: 121 LDQPVFTIKTEGPPHDIRYKAIVVIDGKSFESPTSFNTIKEAEQAAAKF----------- 169
Query: 156 EAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGE 215
V M+ D+ K++L ELS REG P Y+T + G PHMPTF S VEV+G
Sbjct: 170 --------VGMFQKDEPCPSKSLLQELSEREGFSKPTYKTTQIGPPHMPTFFSTVEVEGI 221
Query: 216 VFYGKAGRTKKKAEMKAAKVAYTALIE--RKLIFSLPFHGGRSCSIGSI--THTVKA--- 268
F+GKA ++K KAE AAK+AY L E L G ++ S +H VK+
Sbjct: 222 GFHGKASKSKNKAEEDAAKIAYITLKECGSHTYADLSSSIGEKQAVKSTHESHIVKSKPK 281
Query: 269 -DGVPNSTLSSDLDVTLDPNFIQKSMSVSSPVLEHGEDGKDSMAAKRATVTSSYLLCNRV 327
VP L D + P Q + + + L + K ++ + T+SY+L N++
Sbjct: 282 LKPVPEDELLYD---EILPTDFQVNNGIQNESLPLPPNKKMKISKAKTPNTNSYMLGNKL 338
Query: 328 RVYTRIPDIAFPKGITLMPISEDKWVAVSLEFP 360
+VYT PDI FP+GIT++PI EDKW+A SLEFP
Sbjct: 339 KVYTSFPDIVFPEGITVVPIGEDKWIAASLEFP 371
>gi|357443935|ref|XP_003592245.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|357462121|ref|XP_003601342.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355481293|gb|AES62496.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355490390|gb|AES71593.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 424
Score = 237 bits (604), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 159/435 (36%), Positives = 222/435 (51%), Gaps = 88/435 (20%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
M+KTK+Q+LCHQ+RWSLP+Y+ DG H P F +SV VNG++F SS + S+KE+QN A
Sbjct: 1 MFKTKLQQLCHQRRWSLPKYTATNDGPQHKPSFNASVHVNGVTFASSDAFNSAKEAQNQA 60
Query: 61 AKLAFLHFTSP----------------------------------PPPPPPNVQCRY--- 83
A AF +FTSP P P + R
Sbjct: 61 AMKAFRNFTSPLSEFAIRLIRRDGFSIPTDEYGSKEKVEATKPQESPLPAQSPVIRTDTN 120
Query: 84 ---KSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHA 140
K LQNYAR+ NLD P+++ I+ H +KA V ID +FES FF ++K+AE A
Sbjct: 121 RLSKKHLQNYARKNNLDPPVFT-IKTERLH---YKATVVIDEKSFESPTFFNSIKEAEQA 176
Query: 141 AAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGA 200
AAK+AL L V ++ D+ K++L EL+ REG P Y TI+ G+
Sbjct: 177 AAKIALRELPIS-----------VDLFQKDESCPSKSLLLELTQREGYSKPTYTTIESGS 225
Query: 201 PHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLPFHGGRSCSIG 260
HM T+ S VEV+G F+GKA R+KK+A++ AAK+AY AL E L F +
Sbjct: 226 LHMRTYFSTVEVEGLKFHGKASRSKKQADIDAAKIAYIALKECGLDMYADF-SSYNKENQ 284
Query: 261 SITHTVKADGVPNSTLSSDLDVTLDPNFI--------------------QKSMSVSS--- 297
++ T++ + V + + + D LD + K M +S+
Sbjct: 285 AVQSTLEPEVVKHKQILNSEDKRLDQEKLPTDDVKVNDDMHTESLPIPPNKKMKMSNMRT 344
Query: 298 ------PVLEHGEDGKDSMAAKRATV---TSSYLLCNRVRVYTRIPDIAFPKGITLMPIS 348
L H E +++ T+ TS+YLLC+R VYT PDI FP+ IT++P
Sbjct: 345 SSLPKSSPLSHTELASSTISDSNMTMTCNTSNYLLCDRFNVYTNFPDILFPEDITVLPFD 404
Query: 349 EDKWVAVSLEFPNEE 363
EDKWVA LEFPN+E
Sbjct: 405 EDKWVAACLEFPNDE 419
>gi|224125924|ref|XP_002319709.1| predicted protein [Populus trichocarpa]
gi|222858085|gb|EEE95632.1| predicted protein [Populus trichocarpa]
Length = 240
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 124/248 (50%), Positives = 166/248 (66%), Gaps = 13/248 (5%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK+K+QELC Q+ W LP Y + + G H+PRF ++V+VN +SFHS +SK++QNDA
Sbjct: 1 MYKSKLQELCQQRAWELPTYESSRQGQAHNPRFLATVTVNNISFHSPSPSNTSKKAQNDA 60
Query: 61 AKLAFLHFTSPPPPPPP-----NVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
AKLA+ HF+ P P P ++Q +KS LQ YA+++N P+YS R GP H+ FK
Sbjct: 61 AKLAYEHFSISRPSPSPSPPVSDMQRLFKSQLQTYAQKRNFALPVYSCERVGPPHSSRFK 120
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFY 175
+VT++G TFESLE+F L +AEHAAAK AL SL + +E FL+ D Y
Sbjct: 121 CKVTVNGQTFESLEYFSTLNKAEHAAAKAALMSLLPNGVEEVSFLFM--------DESGY 172
Query: 176 KNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKV 235
KN+L EL+ REG +P Y T K G H+PTFIS VE++GE+F G+ +TKK+AEM AAK
Sbjct: 173 KNLLQELAQREGCGLPTYSTNKSGEAHVPTFISTVEIEGEIFTGQGAKTKKQAEMSAAKT 232
Query: 236 AYTALIER 243
AYTAL +R
Sbjct: 233 AYTALKQR 240
>gi|242054547|ref|XP_002456419.1| hypothetical protein SORBIDRAFT_03g035960 [Sorghum bicolor]
gi|241928394|gb|EES01539.1| hypothetical protein SORBIDRAFT_03g035960 [Sorghum bicolor]
Length = 448
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 150/455 (32%), Positives = 212/455 (46%), Gaps = 103/455 (22%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHS-SVSCKSSKESQND 59
MYK+++QELC ++RW+ P Y ++G H P F+++V VNG SF S +S KE+ N
Sbjct: 1 MYKSRLQELCQKRRWAPPVYEPTREGPAHTPLFRATVVVNGESFSSPDEGERSVKEACNL 60
Query: 60 AAKLAFLHFTS----------PPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPA 109
AA AF + ++ P PPPP Q RYK+ LQ YA+++ P Y I G
Sbjct: 61 AAMAAFENLSALPAEAPAPAPAPAPPPPETQLRYKNQLQEYAQKRGKLLPSYRPIHGGSL 120
Query: 110 HACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLW 169
A FK+ VTIDG TFES E+ + +K+AE AAAKVAL L + A + L
Sbjct: 121 RAPLFKSEVTIDGQTFESPEYCRTMKEAETAAAKVALMFLPQE---------AGPTQQLP 171
Query: 170 DDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAE 229
V YKN+L E +EG P+P Y+T + + FIS VE+ G F G+ G TKK+AE
Sbjct: 172 LPSVSYKNLLQEFVQKEGFPLPTYDTTLDVSNYSAAFISTVEIQGATFRGEPGNTKKQAE 231
Query: 230 MKAAK-----------------------VAYTA------LIERKLIFSLPFHG------- 253
M AAK VA T + KL + P
Sbjct: 232 MNAAKIAFQHFKDINHDAGSAGSANRLPVAATTQSLDGNTLSAKLEVNKPLLAEPSTEVD 291
Query: 254 -----GRSCSIGSITHTVKADGVPNSTLSSDLDV-----------TLDPNFIQKSMSVSS 297
G S I + T++ D + S D++V + + I S+ V
Sbjct: 292 KLPLLGPSMDIEVMDSTLEVDKLSLPEQSIDIEVLKVDKLHSPEASTEAEVIHSSLQVDE 351
Query: 298 PV--------------LEHGE--DGKDSMAAKRATVTSS---------------YLLCNR 326
P+ LEH +G+ ++ A T T S YL NR
Sbjct: 352 PLIPEPSTEVEGMDSSLEHTSVVNGQAALIAPTITSTLSMSTATMPVSNDSCGCYLGTNR 411
Query: 327 VRVYTRIPDIAFPKGITLMPISEDKWVAVSLEFPN 361
++VY R D+ P+G T++PIS+++WVAVSL + N
Sbjct: 412 IQVYPRHTDMVIPEGATMLPISDNQWVAVSLPYSN 446
>gi|218189128|gb|EEC71555.1| hypothetical protein OsI_03907 [Oryza sativa Indica Group]
Length = 1030
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 110/248 (44%), Positives = 149/248 (60%), Gaps = 13/248 (5%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHS-SVSCKSSKESQND 59
MYK+++QELC Q+RW+ P Y+ G H P F ++VSVNG+ F + + +S+KE+ N
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGLAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60
Query: 60 AAKLAFLHFTSPPPPPPPNV---QCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKA 116
AAK AF H +S P PPPP Q YKS LQ YA++K P Y +IREGP HA FK+
Sbjct: 61 AAKAAFDHLSSLPLPPPPPPSENQSSYKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKS 120
Query: 117 RVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYK 176
VT+DG FES E+F +K+AE AAAK+AL SL QE A S + + YK
Sbjct: 121 VVTVDGKAFESPEYFHTVKEAESAAAKLALMSLP----QE-----ASSSEQVPVQPLSYK 171
Query: 177 NVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
N+L EL+ + G +P+Y T G+ +P F S V F G+ TKK+AEM AA+VA
Sbjct: 172 NLLQELAQKHGFSLPVYSTTSDGSVQVPMFKSTVVFQDGSFQGEPANTKKQAEMNAARVA 231
Query: 237 YTALIERK 244
+ +R+
Sbjct: 232 FQHFEDRR 239
>gi|75251129|sp|Q5N8Z0.1|DRB1_ORYSJ RecName: Full=Double-stranded RNA-binding protein 1; AltName:
Full=dsRNA-binding protein 1
gi|56785214|dbj|BAD82066.1| putative dsRNA-binding protein ODB1 [Oryza sativa Japonica Group]
Length = 441
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 110/248 (44%), Positives = 149/248 (60%), Gaps = 13/248 (5%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHS-SVSCKSSKESQND 59
MYK+++QELC Q+RW+ P Y+ G H P F ++VSVNG+ F + + +S+KE+ N
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60
Query: 60 AAKLAFLHFTSPPPPPPPNV---QCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKA 116
AAK AF H +S P PPPP Q YKS LQ YA++K P Y +IREGP HA FK+
Sbjct: 61 AAKAAFDHLSSLPLPPPPPPSENQSSYKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKS 120
Query: 117 RVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYK 176
VT+DG FES E+F +K+AE AAAK+AL SL QE A S + + YK
Sbjct: 121 VVTVDGKAFESPEYFHTVKEAESAAAKLALMSLP----QE-----ASSSEQVPVQPLSYK 171
Query: 177 NVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
N+L EL+ + G +P+Y T G+ +P F S V F G+ TKK+AEM AA+VA
Sbjct: 172 NLLQELAQKHGFSLPVYSTTSDGSVQVPMFKSTVVFQDGSFQGEPANTKKQAEMNAARVA 231
Query: 237 YTALIERK 244
+ +R+
Sbjct: 232 FQHFEDRR 239
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 35/50 (70%), Gaps = 4/50 (8%)
Query: 312 AKRATVTSS----YLLCNRVRVYTRIPDIAFPKGITLMPISEDKWVAVSL 357
A +TV+S+ LL NRV+VY R PD+ P+G T++P S+D WVAVSL
Sbjct: 387 ASASTVSSTGCGCSLLTNRVQVYPRRPDLVLPEGATVLPFSDDVWVAVSL 436
>gi|357443947|ref|XP_003592251.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|357462133|ref|XP_003601348.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355481299|gb|AES62502.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355490396|gb|AES71599.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 443
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 106/279 (37%), Positives = 151/279 (54%), Gaps = 41/279 (14%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQND 59
MYK+++QE CH+++WSLP YS++ DG H+P FK SV VNGL+F SS SSKE+ N
Sbjct: 33 MYKSRLQEFCHRRKWSLPEYSSIYVDGPPHNPSFKGSVFVNGLTFTSSDIFHSSKEAHNQ 92
Query: 60 AAKLAFLHFTSP-------------------PPPPPPNVQCRYKSVL-----------QN 89
AA A L+F+ P P V ++ +L QN
Sbjct: 93 AAMKALLNFSYPSSSSSMPTNEYGSKEKVGAAKPQKCPVPSQFPDILSDTDRLNKLQHQN 152
Query: 90 YARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA-------- 141
YA + NLDSP+++ EGP + A V +DG +F+S F K+AE AA
Sbjct: 153 YASKNNLDSPVFTIEAEGPPRDIRYNATVVVDGKSFKSPTSFDTRKEAEQAALQIVDMFQ 212
Query: 142 AKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAP 201
A+ AL C F++ A + ++ ++ K++L EL+ R +P Y++ + G P
Sbjct: 213 ARSALAFKPCQTFEKP--RSALNNRHMTNETCASKSLLQELTQRRYCSIPTYKSTRTGPP 270
Query: 202 HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
HMPTF S VEV+G F+GKA +KK+AE AAK+AY AL
Sbjct: 271 HMPTFFSTVEVEGVEFHGKASSSKKEAEYDAAKIAYKAL 309
>gi|222619325|gb|EEE55457.1| hypothetical protein OsJ_03618 [Oryza sativa Japonica Group]
Length = 351
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/248 (43%), Positives = 147/248 (59%), Gaps = 13/248 (5%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHS-SVSCKSSKESQND 59
MYK+++QELC Q+RW+ P Y+ G H P F ++VSVNG+ F + + +S+KE+ N
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60
Query: 60 AAKLAFLHFTSPPPPPPPNV---QCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKA 116
AAK A H +S P PPPP Q YKS LQ YA++K P Y +IREGP HA FK+
Sbjct: 61 AAKAALDHLSSLPLPPPPPPSENQSSYKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKS 120
Query: 117 RVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYK 176
VT+DG FES E+F +K+AE AAAK+AL SL + A S + + YK
Sbjct: 121 VVTVDGKAFESPEYFHTVKEAESAAAKLALMSLPQE---------ASSSEQVPVQPLSYK 171
Query: 177 NVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
N+L EL+ + G +P+Y T G+ +P F S V F G+ TKK+AEM AA+VA
Sbjct: 172 NLLQELAQKHGFSLPVYSTTSDGSVQVPMFKSTVVFQDGSFQGEPANTKKQAEMNAARVA 231
Query: 237 YTALIERK 244
+ +R+
Sbjct: 232 FQHFEDRR 239
>gi|296085908|emb|CBI31232.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 84/169 (49%), Positives = 110/169 (65%), Gaps = 13/169 (7%)
Query: 76 PPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLK 135
P +Q YK+ LQ YA+++NL P+YS GP+H C FK++VTI+ T+ES +FF LK
Sbjct: 152 PEGMQHLYKTQLQTYAQKRNLPLPMYSFESIGPSHNCRFKSKVTIEEQTYESPDFFPTLK 211
Query: 136 QAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYET 195
AEHAAAK+AL SL+ FQE DD YKN+L E++ +EG +P+Y T
Sbjct: 212 DAEHAAAKLALMSLSPAGFQE-------------DDYGVYKNLLQEMARKEGYQLPVYST 258
Query: 196 IKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERK 244
K G HMPTF+S VE++GE F G+ +TKK AEM AAK AYT L ER+
Sbjct: 259 EKSGVSHMPTFLSTVEIEGETFVGQKAKTKKLAEMNAAKAAYTHLKERR 307
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 11/153 (7%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
+YKT++Q ++ LP YS G H+ RFKS V++ ++ S + K++++ A
Sbjct: 158 LYKTQLQTYAQKRNLPLPMYSFESIGPSHNCRFKSKVTIEEQTYESPDFFPTLKDAEHAA 217
Query: 61 AKLAFLHFTSPPPPPPPNVQ----CRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKA 116
AKLA + + P Q YK++LQ AR++ P+YS+ + G +H +F +
Sbjct: 218 AKLALMSLS------PAGFQEDDYGVYKNLLQEMARKEGYQLPVYSTEKSGVSHMPTFLS 271
Query: 117 RVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V I+G TF + K K AE AAK A L
Sbjct: 272 TVEIEGETFVG-QKAKTKKLAEMNAAKAAYTHL 303
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 176 KNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVF-YGKAGRTKKKAEMKAAK 234
K L EL R+ P Y T K G PH PTFI+ V V G F R+ K+A+ AA
Sbjct: 3 KTRLQELCHRKRWNPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNAAG 62
Query: 235 VAYTALIERK 244
+A L + K
Sbjct: 63 LAIQYLTDPK 72
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 84 KSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAK 143
K+ LQ RK + P YS+ ++GP H +F A V++ G +F + ++ K+A+ AA
Sbjct: 3 KTRLQELCHRKRWNPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNAAG 62
Query: 144 VAL 146
+A+
Sbjct: 63 LAI 65
>gi|224146035|ref|XP_002325855.1| predicted protein [Populus trichocarpa]
gi|222862730|gb|EEF00237.1| predicted protein [Populus trichocarpa]
Length = 281
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/292 (36%), Positives = 150/292 (51%), Gaps = 67/292 (22%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK+K+Q+L Q+ W +P+Y K+G +H P F ++V+V+ F + SSK++QN A
Sbjct: 1 MYKSKLQQLSQQRGWEIPKYEVTKEGQEHSPHFYATVTVDATLFSTPFPSSSSKKAQNAA 60
Query: 61 AKLAFLHFTSPP------------------------PPPPPNVQCR-------------- 82
AKLA +F+ P P P N++
Sbjct: 61 AKLAHNYFSDHPRASSSSPLNVSADCSGGSAGENTRPSPGGNLELDLQDANRTPLSNEAG 120
Query: 83 ---------------YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFES 127
+K+ LQ YA+++N P+YS R GP HA FK +VT++G T+ES
Sbjct: 121 AVAKTDESFGGILHLFKNQLQTYAQKRNFTRPVYSCERVGPPHAIRFKCKVTVNGQTYES 180
Query: 128 LEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREG 187
E+F L +AE+AAAK AL SL + +E D YKN+L +++ REG
Sbjct: 181 REYFPTLSKAENAAAKAALMSLLPNGVEE--------------DESGYKNLLQDMAQREG 226
Query: 188 LPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTA 239
+P Y T K G H PTFIS VE+DG F GK R KK+AEM AAK+AYTA
Sbjct: 227 CGLPTYFTEKSGEAHAPTFISTVEIDGVNFTGKEARNKKQAEMSAAKIAYTA 278
Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 174 FYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEV-FYGKAGRTKKKAEMKA 232
YK+ L +LS + G +P YE K G H P F + V VD + + KKA+ A
Sbjct: 1 MYKSKLQQLSQQRGWEIPKYEVTKEGQEHSPHFYATVTVDATLFSTPFPSSSSKKAQNAA 60
Query: 233 AKVAYTALIER-KLIFSLPFHGGRSCSIGSITHTVKADGVPNSTLSSDL 280
AK+A+ + + S P + CS GS + P L DL
Sbjct: 61 AKLAHNYFSDHPRASSSSPLNVSADCSGGSAGENTRPS--PGGNLELDL 107
>gi|293336145|ref|NP_001169453.1| uncharacterized protein LOC100383324 [Zea mays]
gi|224029475|gb|ACN33813.1| unknown [Zea mays]
Length = 459
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/249 (41%), Positives = 139/249 (55%), Gaps = 21/249 (8%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSC-KSSKESQND 59
MYK+++QELC ++RW+ P Y ++G H P F+++V VNG F S KS KE+ N
Sbjct: 1 MYKSRLQELCQKRRWAPPLYEPTREGPAHAPLFRATVVVNGERFSSRDEGEKSLKEAYNL 60
Query: 60 AAKLAFLHF-----------TSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGP 108
AA AF + + P PP Q YKS LQ YA+++ P Y I G
Sbjct: 61 AAMAAFDNLIALPAAALAPAPAAPAPPSSETQLPYKSQLQIYAQKRGKLLPSYRPIHGGS 120
Query: 109 AHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYL 168
HA FK+ VTIDG TFES E+ +K+AE AAKVAL SL + A+ + L
Sbjct: 121 LHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAAKVALMSLPQE---------ANPTQQL 171
Query: 169 WDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKA 228
V YKN+L EL +EG P+P+Y T + + F+S VE+ G F+GK G TKK+A
Sbjct: 172 LLPSVNYKNLLQELVQKEGFPLPIYNTASDVSNYSAAFVSTVEIRGVTFHGKPGNTKKQA 231
Query: 229 EMKAAKVAY 237
EM AAK A+
Sbjct: 232 EMNAAKSAF 240
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 100/410 (24%), Positives = 166/410 (40%), Gaps = 94/410 (22%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
YK+++Q ++ LP Y + G+ H P FKS V+++G +F S C + KE++ AA
Sbjct: 95 YKSQLQIYAQKRGKLLPSYRPIHGGSLHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAA 154
Query: 62 KLAFLHFTSPPPPPPPNVQ-----CRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKA 116
K+A + P P Q YK++LQ +++ P+Y++ + ++ +F +
Sbjct: 155 KVALMSL---PQEANPTQQLLLPSVNYKNLLQELVQKEGFPLPIYNTASDVSNYSAAFVS 211
Query: 117 RVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYK 176
V I G TF + KQAE AAK A + H +K
Sbjct: 212 TVEIRGVTFHG-KPGNTKKQAEMNAAKSA---------------FEH-----------FK 244
Query: 177 NVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKV 235
N+ H+ S P+P+ T + VDG +A K+ +
Sbjct: 245 NINHDAGSSGSANPLPVAATKQS-------------VDGNTL--RAKLEVNKSHLAEPST 289
Query: 236 AYTALIERKLIFSLPFHGGRSCSIGSITHTVKADGVP-----------NSTLSSD----L 280
A+ + LP G S I + T++ D +P NS+L D
Sbjct: 290 EVEAIYSSTEVDKLPL-PGPSMDIEVMDSTLEVDKLPLPERSMDVKVVNSSLKVDKLHFA 348
Query: 281 DVTLDPNFIQKSMSVSSPV---------LEHGEDGKDSMAAKRATVTSS----------- 320
+ + I S+ V P+ LE+ A T+T +
Sbjct: 349 EPITEAEVIHSSLQVDEPLIPKPGMSSSLENTPAVNGHSAPISPTITPTLISVPTATMPV 408
Query: 321 -------YLLCNRVRVYTRIPDIAFPKGITLMPISEDKWVAVSLEFPNEE 363
Y+ NR++VY R D+ P+G ++PIS+++WVAVSL + E+
Sbjct: 409 SNDRCGCYMSTNRIQVYPRHTDMVIPEGAAVLPISDNQWVAVSLPYSMEQ 458
>gi|414880296|tpg|DAA57427.1| TPA: hypothetical protein ZEAMMB73_801819 [Zea mays]
Length = 459
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 102/249 (40%), Positives = 137/249 (55%), Gaps = 21/249 (8%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSC-KSSKESQND 59
MYK+++QELC ++RW+ P Y ++G H P F+++V VNG F S KS KE+ N
Sbjct: 1 MYKSRLQELCQKRRWAPPLYEPTREGPAHAPLFRATVVVNGERFSSRDEGEKSLKEAYNL 60
Query: 60 AAKLAFLHFTSPPPPPPP-----------NVQCRYKSVLQNYARRKNLDSPLYSSIREGP 108
AA AF + + P Q YKS LQ YA+++ P Y I G
Sbjct: 61 AAMAAFDNLIALPAAALAPAPAAPAPPSSETQLPYKSQLQIYAQKRGKLLPSYRPIHGGS 120
Query: 109 AHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYL 168
HA FK+ VTIDG TFES E+ +K+AE AAKVAL SL + A+ + L
Sbjct: 121 LHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAAKVALMSLPQE---------ANPTQQL 171
Query: 169 WDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKA 228
V YKN+L EL +EG P+P+Y T + + F+S VE+ G F+GK G TKK+A
Sbjct: 172 LLPSVNYKNLLQELVQKEGFPLPIYNTASDVSNYSAAFVSTVEIHGVTFHGKPGNTKKQA 231
Query: 229 EMKAAKVAY 237
EM AAK A+
Sbjct: 232 EMNAAKSAF 240
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 100/410 (24%), Positives = 166/410 (40%), Gaps = 94/410 (22%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
YK+++Q ++ LP Y + G+ H P FKS V+++G +F S C + KE++ AA
Sbjct: 95 YKSQLQIYAQKRGKLLPSYRPIHGGSLHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAA 154
Query: 62 KLAFLHFTSPPPPPPPNVQ-----CRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKA 116
K+A + P P Q YK++LQ +++ P+Y++ + ++ +F +
Sbjct: 155 KVALMSL---PQEANPTQQLLLPSVNYKNLLQELVQKEGFPLPIYNTASDVSNYSAAFVS 211
Query: 117 RVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYK 176
V I G TF + KQAE AAK A + H +K
Sbjct: 212 TVEIHGVTFHG-KPGNTKKQAEMNAAKSA---------------FEH-----------FK 244
Query: 177 NVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKV 235
N+ H+ S P+P+ T + VDG +A K+ +
Sbjct: 245 NINHDAGSSGSANPLPVAATKQS-------------VDGNTL--RAKLEVNKSHLAEPST 289
Query: 236 AYTALIERKLIFSLPFHGGRSCSIGSITHTVKADGVP-----------NSTLSSD----L 280
A+ + LP G S I + T++ D +P NS+L D
Sbjct: 290 EVEAIYSSTEVDKLPL-PGPSMDIEVMDSTLEVDKLPLPERSMDVKVVNSSLKVDKLHFA 348
Query: 281 DVTLDPNFIQKSMSVSSPV---------LEHGEDGKDSMAAKRATVTSS----------- 320
+ + I S+ V P+ LE+ A T+T +
Sbjct: 349 EPITEAEVIHSSLQVDEPLIPKPGMSSSLENTPAVNGHSAPISPTITPTLISVPTATMPV 408
Query: 321 -------YLLCNRVRVYTRIPDIAFPKGITLMPISEDKWVAVSLEFPNEE 363
Y+ NR++VY R D+ P+G ++PIS+++WVAVSL + E+
Sbjct: 409 SNDRCGCYMSTNRIQVYPRHTDMVIPEGAAVLPISDNQWVAVSLPYSMEQ 458
>gi|414880297|tpg|DAA57428.1| TPA: hypothetical protein ZEAMMB73_801819 [Zea mays]
Length = 472
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 106/249 (42%), Positives = 140/249 (56%), Gaps = 21/249 (8%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSC-KSSKESQND 59
MYK+++QELC ++RW+ P Y ++G H P F+++V VNG F S KS KE+ N
Sbjct: 1 MYKSRLQELCQKRRWAPPLYEPTREGPAHAPLFRATVVVNGERFSSRDEGEKSLKEAYNL 60
Query: 60 AAKLAFLHF-----------TSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGP 108
AA AF + + P PP Q YKS LQ YA+++ P Y I G
Sbjct: 61 AAMAAFDNLIALPAAALAPAPAAPAPPSSETQLPYKSQLQIYAQKRGKLLPSYRPIHGGS 120
Query: 109 AHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYL 168
HA FK+ VTIDG TFES E+ +K+AE AAKVAL SL QE A+ + L
Sbjct: 121 LHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAAKVALMSLP----QE-----ANPTQQL 171
Query: 169 WDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKA 228
V YKN+L EL +EG P+P+Y T + + F+S VE+ G F+GK G TKK+A
Sbjct: 172 LLPSVNYKNLLQELVQKEGFPLPIYNTASDVSNYSAAFVSTVEIHGVTFHGKPGNTKKQA 231
Query: 229 EMKAAKVAY 237
EM AAK A+
Sbjct: 232 EMNAAKSAF 240
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 100/410 (24%), Positives = 166/410 (40%), Gaps = 94/410 (22%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
YK+++Q ++ LP Y + G+ H P FKS V+++G +F S C + KE++ AA
Sbjct: 95 YKSQLQIYAQKRGKLLPSYRPIHGGSLHAPLFKSEVTIDGQTFESPEYCHTMKEAETVAA 154
Query: 62 KLAFLHFTSPPPPPPPNVQ-----CRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKA 116
K+A + P P Q YK++LQ +++ P+Y++ + ++ +F +
Sbjct: 155 KVALMSL---PQEANPTQQLLLPSVNYKNLLQELVQKEGFPLPIYNTASDVSNYSAAFVS 211
Query: 117 RVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYK 176
V I G TF + KQAE AAK A + H +K
Sbjct: 212 TVEIHGVTFHG-KPGNTKKQAEMNAAKSA---------------FEH-----------FK 244
Query: 177 NVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKV 235
N+ H+ S P+P+ T + VDG +A K+ +
Sbjct: 245 NINHDAGSSGSANPLPVAATKQS-------------VDGNTL--RAKLEVNKSHLAEPST 289
Query: 236 AYTALIERKLIFSLPFHGGRSCSIGSITHTVKADGVP-----------NSTLSSD----L 280
A+ + LP G S I + T++ D +P NS+L D
Sbjct: 290 EVEAIYSSTEVDKLPL-PGPSMDIEVMDSTLEVDKLPLPERSMDVKVVNSSLKVDKLHFA 348
Query: 281 DVTLDPNFIQKSMSVSSPV---------LEHGEDGKDSMAAKRATVTSS----------- 320
+ + I S+ V P+ LE+ A T+T +
Sbjct: 349 EPITEAEVIHSSLQVDEPLIPKPGMSSSLENTPAVNGHSAPISPTITPTLISVPTATMPV 408
Query: 321 -------YLLCNRVRVYTRIPDIAFPKGITLMPISEDKWVAVSLEFPNEE 363
Y+ NR++VY R D+ P+G ++PIS+++WVAVSL + E+
Sbjct: 409 SNDRCGCYMSTNRIQVYPRHTDMVIPEGAAVLPISDNQWVAVSLPYSMEQ 458
>gi|357443939|ref|XP_003592247.1| hypothetical protein MTR_1g100710 [Medicago truncatula]
gi|355481295|gb|AES62498.1| hypothetical protein MTR_1g100710 [Medicago truncatula]
Length = 257
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 104/267 (38%), Positives = 139/267 (52%), Gaps = 58/267 (21%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQND 59
M+K+K+QELCH++RWSLP+YS DG H+P FK SV VNGL+F SS + SS E+QN
Sbjct: 1 MHKSKLQELCHRRRWSLPKYSAFHVDGPPHNPSFKGSVFVNGLTFTSSDTFNSSGEAQNQ 60
Query: 60 AAKLAFLHFTSP--------------------PPPPPPNVQ----CRYKSVLQNYARRKN 95
AA AF +FTSP P P +Q + + QN AR+ +
Sbjct: 61 AAMKAFRNFTSPLSSSSKPTNEHGSKEEVKAVKPQESPVLQQSPVIKSDTDHQNCARKND 120
Query: 96 LDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQ 155
LD P+++ EGP H +KA V IDG +FES F +K+AE AAAK
Sbjct: 121 LDQPVFTIKTEGPPHDIRYKAIVVIDGKSFESPTSFNTIKEAEQAAAKF----------- 169
Query: 156 EAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGE 215
V M+ D+ K++L ELS REG P Y+T +++G
Sbjct: 170 --------VGMFQKDEPCPSKSLLQELSEREGFSKPTYKT--------------TQIEGI 207
Query: 216 VFYGKAGRTKKKAEMKAAKVAYTALIE 242
F+GKA ++K KAE AAK+AY L E
Sbjct: 208 GFHGKASKSKNKAEEDAAKIAYITLKE 234
>gi|449446736|ref|XP_004141127.1| PREDICTED: uncharacterized protein LOC101222879 [Cucumis sativus]
Length = 446
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/280 (37%), Positives = 146/280 (52%), Gaps = 38/280 (13%)
Query: 79 VQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAE 138
+Q YK+ LQN+++++ L P+Y+ R+GP HA F+ +V IDG T+ESLEF LK AE
Sbjct: 200 MQHLYKNKLQNFSQKRGLTLPMYTCERDGPPHASRFRCKVEIDGKTYESLEFHGTLKDAE 259
Query: 139 HAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKC 198
+A AKVAL SL D QE D YKN+L E++ + GL +P Y T +
Sbjct: 260 NAVAKVALMSLCQDGAQED------------SDSGLYKNLLQEMAQKGGLGLPAYSTSQS 307
Query: 199 GAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLPFHGGRSCS 258
G H+P F+S V+V E F GK RTKK+AEM AAKVAY + E S SC
Sbjct: 308 GEVHVPVFVSTVKVGEENFEGKPSRTKKQAEMSAAKVAYFTIKEGSQSIST-RKRAPSCD 366
Query: 259 IGSITHTVKADGVPNSTLSSDLDVTLDPNFIQKSMSVSSPVLEHGEDGKDSMAAKRATVT 318
+ A +P +S +V P +S S ++ E GK S +
Sbjct: 367 L--------ALEIPRDIATSSHNVA-QPG---QSKDYVSRIVSRLEAGKSSSS------- 407
Query: 319 SSYLLCNRVRVYTRIPDIAFPKGITLMPISEDKWVAVSLE 358
R+ V R P++ PK +++PIS+D+WVA S E
Sbjct: 408 ------KRIFVCPRQPNMTIPKESSVLPISDDQWVAFSFE 441
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 24/160 (15%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
+YK K+Q ++ +LP Y+ +DG H RF+ V ++G ++ S + K+++N
Sbjct: 203 LYKNKLQNFSQKRGLTLPMYTCERDGPPHASRFRCKVEIDGKTYESLEFHGTLKDAENAV 262
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-----------YKSVLQNYARRKNLDSPLYSSIREGPA 109
AK+A + C+ YK++LQ A++ L P YS+ + G
Sbjct: 263 AKVALMSL------------CQDGAQEDSDSGLYKNLLQEMAQKGGLGLPAYSTSQSGEV 310
Query: 110 HACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
H F + V + FE + + KQAE +AAKVA F++
Sbjct: 311 HVPVFVSTVKVGEENFEG-KPSRTKKQAEMSAAKVAYFTI 349
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+ LQ RK+ P YS +++G H F+A VT+DG F S K+ KQA++ AA
Sbjct: 2 FKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAA 61
Query: 143 KVA--LFSL 149
K+A FSL
Sbjct: 62 KLAFDFFSL 70
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 174 FYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKA-GRTKKKAEMKA 232
+K L EL R+ +P Y +K G H P F + V VDG+ F ++ K+A+ A
Sbjct: 1 MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDA 60
Query: 233 AKVAYTALIERKLIFSLP 250
AK+A+ FSLP
Sbjct: 61 AKLAFD-------FFSLP 71
>gi|449527097|ref|XP_004170549.1| PREDICTED: double-stranded RNA-binding protein 4-like [Cucumis
sativus]
Length = 247
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 106/280 (37%), Positives = 146/280 (52%), Gaps = 38/280 (13%)
Query: 79 VQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAE 138
+Q YK+ LQN+++++ L P+Y+ R+GP HA F+ +V IDG T+ESLEF LK AE
Sbjct: 1 MQHLYKNKLQNFSQKRGLTLPMYTCERDGPPHASRFRCKVEIDGKTYESLEFHGTLKDAE 60
Query: 139 HAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKC 198
+A AKVAL SL D QE D YKN+L E++ + GL +P Y T +
Sbjct: 61 NAVAKVALMSLCQDGAQED------------SDSGLYKNLLQEMAQKGGLGLPAYSTSQS 108
Query: 199 GAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLPFHGGRSCS 258
G H+P F+S V+V E F GK RTKK+AEM AAKVAY + E S SC
Sbjct: 109 GEVHVPVFVSTVKVGEENFEGKPSRTKKQAEMSAAKVAYFTIKEGSQSISTRKRAP-SCD 167
Query: 259 IGSITHTVKADGVPNSTLSSDLDVTLDPNFIQKSMSVSSPVLEHGEDGKDSMAAKRATVT 318
+ A VP +S +V P +S S ++ E GK S +
Sbjct: 168 L--------ALEVPRDIATSSHNVA-QPG---QSKDYVSRIVSRLEAGKSSSS------- 208
Query: 319 SSYLLCNRVRVYTRIPDIAFPKGITLMPISEDKWVAVSLE 358
R+ V R P++ PK +++PIS+D+WVA S E
Sbjct: 209 ------KRIFVCPRQPNMTIPKESSVLPISDDQWVAFSFE 242
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 2/149 (1%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
+YK K+Q ++ +LP Y+ +DG H RF+ V ++G ++ S + K+++N
Sbjct: 4 LYKNKLQNFSQKRGLTLPMYTCERDGPPHASRFRCKVEIDGKTYESLEFHGTLKDAENAV 63
Query: 61 AKLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTI 120
AK+A + + YK++LQ A++ L P YS+ + G H F + V +
Sbjct: 64 AKVALMSLCQDGAQEDSDSGL-YKNLLQEMAQKGGLGLPAYSTSQSGEVHVPVFVSTVKV 122
Query: 121 DGHTFESLEFFKNLKQAEHAAAKVALFSL 149
FE + + KQAE +AAKVA F++
Sbjct: 123 GEENFEG-KPSRTKKQAEMSAAKVAYFTI 150
>gi|147856819|emb|CAN79168.1| hypothetical protein VITISV_028064 [Vitis vinifera]
Length = 292
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 104/285 (36%), Positives = 143/285 (50%), Gaps = 43/285 (15%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
M KT++QELCH+KRW+ P YST KDG H+P F ++VSV GLSF + +SSKE+Q++A
Sbjct: 10 MNKTRLQELCHRKRWNPPEYSTRKDGPPHNPTFXATVSVGGLSFSTDHPARSSKEAQSNA 69
Query: 61 AKLAFLHFTSPPPPP---------------------PPNVQCRYKSVLQNYA-----RRK 94
A LA + T P PPP P +Q +S + A K
Sbjct: 70 AGLAIQYLTDPKPPPLADSSSXITDVKNIPATKGTSQPEIQATSQSHQAHEAFLVTRDDK 129
Query: 95 NLDSPLYSSIREG-PAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDD 153
LDS S+I PA + + ++ T E E +K + L+
Sbjct: 130 KLDSSSASNIVNNVPATKGTLQVQIQETCQTPEGNETSLVVKADKKLGGMQHLYKTQLQT 189
Query: 154 FQEAIFLYAHVSMYLW--------------DDGVFYKNVLHELSLREGLPVPLYETIKCG 199
+ + L + MY + DD YKN+L E++ +EG +P+Y T K G
Sbjct: 190 YAQKRNL--PLPMYSFESIGPSHNCRFKSKDDYGVYKNLLQEMARKEGYQLPVYSTEKSG 247
Query: 200 APHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERK 244
HMPTF+S VE++GE F G+ +TKK AEM AAK AYT L ERK
Sbjct: 248 VSHMPTFLSTVEIEGETFVGQKAKTKKLAEMNAAKAAYTHLKERK 292
>gi|357131055|ref|XP_003567159.1| PREDICTED: double-stranded RNA-binding protein 1-like [Brachypodium
distachyon]
Length = 608
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 138/243 (56%), Gaps = 15/243 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVS---CKSSKESQ 57
M+K+++ ELCHQ+RW+ P Y+ +G H P+F+++V VNG FHS ++KE+Q
Sbjct: 1 MFKSRLNELCHQQRWAPPAYTHQLEGPAHTPKFRATVVVNGSEFHSPEEEAWPTTAKEAQ 60
Query: 58 NDAAKLAFLHFTS---PPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSF 114
+ AAK AF H +S PPPPP P Q YKS LQ YA+++ D P Y SIR GP HA F
Sbjct: 61 SLAAKAAFEHLSSLPPPPPPPQPGTQVDYKSQLQIYAQKRRKDIPFYHSIRSGPPHATLF 120
Query: 115 KARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVF 174
K VTIDG TFES + + +K+AE AAA+VAL SL + A+ L +
Sbjct: 121 KTTVTIDGQTFESPQEYHTIKEAEFAAARVALMSLPQE---------ANPPQQLLVQTIS 171
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
+ +L+ +EG P+ +Y + H VE G F G TKK++EM A +
Sbjct: 172 HNRARQDLAEKEGSPLDVYNATLDDSNHFSISKEKVETQGRSFQAGPGHTKKQSEMIATE 231
Query: 235 VAY 237
+A+
Sbjct: 232 LAF 234
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 29/38 (76%)
Query: 322 LLCNRVRVYTRIPDIAFPKGITLMPISEDKWVAVSLEF 359
+L NR++VY R PD+ P+G T++P S++ WVAVSL F
Sbjct: 568 MLTNRIQVYPRRPDMVLPEGATVLPFSDEAWVAVSLPF 605
>gi|255569488|ref|XP_002525711.1| hypothetical protein RCOM_1321840 [Ricinus communis]
gi|223535011|gb|EEF36694.1| hypothetical protein RCOM_1321840 [Ricinus communis]
Length = 162
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/161 (57%), Positives = 116/161 (72%), Gaps = 1/161 (0%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYKTK+QELCHQK WSLP YST K G DH+P F ++V VNG SF SS KSSK +QN+A
Sbjct: 1 MYKTKLQELCHQKTWSLPEYSTTKVGQDHNPIFHATVIVNGYSFSSSSPSKSSKLAQNNA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTI 120
AKLAF HF+S PP Q YK++LQ+YA+++ L P+YS R+GP HA FK +VTI
Sbjct: 61 AKLAFDHFSSVSLPPDVQ-QHLYKNLLQSYAQKRGLPLPMYSCERQGPPHASLFKCKVTI 119
Query: 121 DGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLY 161
DG ++E L+FF + +AEHAAAK AL SLA D +EA L+
Sbjct: 120 DGKSYECLDFFPTVSKAEHAAAKAALTSLAPDGAEEASLLF 160
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 12/135 (8%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ +K P YS+ + G H F A V ++G++F S K+ K A++ AA
Sbjct: 2 YKTKLQELCHQKTWSLPEYSTTKVGQDHNPIFHATVIVNGYSFSSSSPSKSSKLAQNNAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
K+A D ++ L V +L YKN+L + + GLP+P+Y + G PH
Sbjct: 62 KLAF------DHFSSVSLPPDVQQHL------YKNLLQSYAQKRGLPLPMYSCERQGPPH 109
Query: 203 MPTFISMVEVDGEVF 217
F V +DG+ +
Sbjct: 110 ASLFKCKVTIDGKSY 124
>gi|224150739|ref|XP_002337003.1| predicted protein [Populus trichocarpa]
gi|222837556|gb|EEE75921.1| predicted protein [Populus trichocarpa]
Length = 330
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 116/339 (34%), Positives = 164/339 (48%), Gaps = 75/339 (22%)
Query: 79 VQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAE 138
+Q +K+ LQ YA+++N P+YS R GP HA FK +VT++G T+ES E+F L +AE
Sbjct: 1 MQHLFKNQLQTYAQKRNFTLPVYSCERVGPPHASRFKCKVTVNGQTYESQEYFPTLNKAE 60
Query: 139 HAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKC 198
AAAK AL SL + +E DG YK++L EL+ REG +P Y T K
Sbjct: 61 LAAAKAALMSLLSNGVEE--------------DGFGYKSLLQELAQREGCGLPTYWTDKS 106
Query: 199 GAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLPF------- 251
G H+PTF+S VE++GE+F G+ +TKK+AEM AAK+AYTAL +R S F
Sbjct: 107 GEAHVPTFVSKVEIEGEIFTGQGAKTKKQAEMSAAKIAYTALQQRYSSQSPGFLSTSSQF 166
Query: 252 -HGGRSCSIGSITHTVKA--DGVPN---STLSSDLDVTLDPNFIQKSMSVSSPVLEH--- 302
RS + + +A P S L + L L N IQ + VS+ E
Sbjct: 167 QEAPRSSPLSPARQSQEAVQSETPQFSVSNLRAGLTAYLQQN-IQPKLPVSNEQAEEYRA 225
Query: 303 --------------GEDGKDSMA------------AKRATVTSSYLLCN----------- 325
G+D +MA + + +TSS L +
Sbjct: 226 NSVVSNHNPSIASPGQDSCSAMASITPSPAAAISSSPKHDLTSSSLPSDSPTNLATSSSI 285
Query: 326 -------RVRVYTRIPDIAFPKGITLMPISEDKWVAVSL 357
RV ++ + +P G T++PIS+DKW AV L
Sbjct: 286 EFMVRGIRVLMHPSGTKMTYPAGSTVLPISDDKWAAVEL 324
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 30/162 (18%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSS------------- 47
++K ++Q ++ ++LP YS + G H RFK V+VNG ++ S
Sbjct: 4 LFKNQLQTYAQKRNFTLPVYSCERVGPPHASRFKCKVTVNGQTYESQEYFPTLNKAELAA 63
Query: 48 VSCKSSKESQNDAAKLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREG 107
N + F YKS+LQ A+R+ P Y + + G
Sbjct: 64 AKAALMSLLSNGVEEDGF----------------GYKSLLQELAQREGCGLPTYWTDKSG 107
Query: 108 PAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
AH +F ++V I+G F + K KQAE +AAK+A +L
Sbjct: 108 EAHVPTFVSKVEIEGEIFTG-QGAKTKKQAEMSAAKIAYTAL 148
>gi|326510101|dbj|BAJ87267.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 304
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 143/249 (57%), Gaps = 7/249 (2%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHS---SVSCKSSKESQ 57
M+K ++ +LC Q+RW P Y+ +G H RF+++V+VNG +HS ++KE+
Sbjct: 27 MFKAQLNQLCQQRRWPAPDYAHRSEGPAHLLRFRATVAVNGEVYHSPDDGGGSGTAKEAH 86
Query: 58 NDAAKLAFLHFTS--PPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
N AAK AF ++ PPPPP Q YKS LQ YA++++ D P Y +IR GP HA F+
Sbjct: 87 NLAAKAAFERLSALPPPPPPQSETQLPYKSQLQVYAQKRHKDLPSYDTIRNGPPHAPLFR 146
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACD-DFQEAIFLYAHVSMYLWDDGVF 174
+ VTIDG TFES + + K+AE AAA+VAL SL+ + + E + + + + L +
Sbjct: 147 STVTIDGRTFESPQDYHTTKEAEFAAARVALMSLSQEANPSEQMLVGSASCISLPGIQIN 206
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYG-KAGRTKKKAEMKAA 233
+K L + + G +P Y + G H P F S V +DG+ F + +T K++E AA
Sbjct: 207 HKLQLQIYAQKRGKQLPKYRRTQEGPSHAPLFKSTVTIDGQTFESPQYCQTIKESENAAA 266
Query: 234 KVAYTALIE 242
+A +L +
Sbjct: 267 NLALMSLTQ 275
>gi|359487919|ref|XP_002271134.2| PREDICTED: double-stranded RNA-binding protein 2 [Vitis vinifera]
Length = 532
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 100/163 (61%), Gaps = 8/163 (4%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P YS IREGP HA FKA V +G TFES F L+QAEHAAA
Sbjct: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGETFESPSFCSTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL +LA +A+ + + D+ YKN+L E + R GL +P+Y TI+ G H
Sbjct: 62 EVALNTLANRGPSKAL------AARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKL 245
+P F VE+ G F G+A +TKK+A+ AA A++AL RKL
Sbjct: 116 VPVFSCTVEIAGMSFTGEAAKTKKQAQKNAAMTAWSAL--RKL 156
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 15/172 (8%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP YS +++G DH PRFK++V+ NG +F S C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGETFESPSFCSTLRQAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A + P + R YK++LQ A R L+ P+Y++IR GP H
Sbjct: 61 AEVALNTLAN--RGPSKALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPV 118
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL-----ACDDFQEAIFL 160
F V I G +F E K KQA+ AA A +L C++ QE + +
Sbjct: 119 FSCTVEIAGMSFTG-EAAKTKKQAQKNAAMTAWSALRKLESECNEEQEQVII 169
>gi|326507276|dbj|BAJ95715.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 99/164 (60%), Gaps = 6/164 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+ LQ A+R + P Y+ IREGP HA FKA VT +G +FES F+ L+QAEHAAA
Sbjct: 2 FKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVTFNGESFESPGFYSTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL L+ ++ + + D+ YKN+L E + R GL +P+Y TI+ G H
Sbjct: 62 EVALNELSKRGPSSSL------AAKVLDETGIYKNLLQETAHRAGLKLPMYTTIRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLI 246
PTF VE+ G +F G G+TKK+A+ AA A++ L + L+
Sbjct: 116 TPTFTCTVELAGRIFTGSPGKTKKQAQKNAAMAAWSELKQLPLV 159
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 85/156 (54%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
M+K ++QEL + ++LP Y+ +++G DH PRFK++V+ NG SF S + +++++ A
Sbjct: 1 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVTFNGESFESPGFYSTLRQAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A + P ++ + YK++LQ A R L P+Y++IR GP H +
Sbjct: 61 AEVALNELSK--RGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPMYTTIRSGPGHTPT 118
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + G F + K KQA+ AA A L
Sbjct: 119 FTCTVELAGRIF-TGSPGKTKKQAQKNAAMAAWSEL 153
>gi|298204936|emb|CBI34243.3| unnamed protein product [Vitis vinifera]
Length = 551
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 100/163 (61%), Gaps = 8/163 (4%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P YS IREGP HA FKA V +G TFES F L+QAEHAAA
Sbjct: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGETFESPSFCSTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL +LA +A+ + + D+ YKN+L E + R GL +P+Y TI+ G H
Sbjct: 62 EVALNTLANRGPSKAL------AARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKL 245
+P F VE+ G F G+A +TKK+A+ AA A++AL RKL
Sbjct: 116 VPVFSCTVEIAGMSFTGEAAKTKKQAQKNAAMTAWSAL--RKL 156
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP YS +++G DH PRFK++V+ NG +F S C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGETFESPSFCSTLRQAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A + P + R YK++LQ A R L+ P+Y++IR GP H
Sbjct: 61 AEVALNTLAN--RGPSKALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPV 118
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V I G +F E K KQA+ AA A +L
Sbjct: 119 FSCTVEIAGMSFTG-EAAKTKKQAQKNAAMTAWSAL 153
>gi|255542426|ref|XP_002512276.1| hypothetical protein RCOM_1429110 [Ricinus communis]
gi|223548237|gb|EEF49728.1| hypothetical protein RCOM_1429110 [Ricinus communis]
Length = 568
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 95/158 (60%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P YS IREGP HA FKA V +G TFES F L+QAEHAAA
Sbjct: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGETFESPAFCSTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL +LA A+ + + D+ YKN+L E + R GL +P+Y T++ G H
Sbjct: 62 EVALNTLASRGPSRAL------AARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+P F VE+ G F G+ RTKK+A+ AA A++AL
Sbjct: 116 VPVFSCTVELAGMSFTGEPARTKKQAQKNAAMAAWSAL 153
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP YS +++G DH PRFK++V+ NG +F S C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGETFESPAFCSTLRQAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A S P + R YK++LQ A R L P+Y+++R GP H
Sbjct: 61 AEVALNTLAS--RGPSRALAARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHVPV 118
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + G +F E + KQA+ AA A +L
Sbjct: 119 FSCTVELAGMSFTG-EPARTKKQAQKNAAMAAWSAL 153
>gi|18389232|gb|AAL67059.1| unknown protein [Arabidopsis thaliana]
Length = 355
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/158 (46%), Positives = 93/158 (58%), Gaps = 14/158 (8%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK LQ YA + NL+ P+Y++ REGP HA F+ VT G TF+S EFF LK AEHAAA
Sbjct: 5 YKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAAA 64
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
K+A+ SL E I V YKN+L E++ +E +P Y T G H
Sbjct: 65 KIAVASLTPQS-PEGI-------------DVAYKNLLQEIAQKESSLLPFYATATSGPSH 110
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
PTF S VE G+VF G+ +TKK AEM AAKVA+ ++
Sbjct: 111 APTFTSTVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSI 148
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 81/149 (54%), Gaps = 4/149 (2%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
+YK ++Q Q LP Y+ ++G H PRF+ +V+ G +F SS + K +++ A
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 61 AKLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTI 120
AK+A T P P + YK++LQ A++++ P Y++ GP+HA +F + V
Sbjct: 64 AKIAVASLT---PQSPEGIDVAYKNLLQEIAQKESSLLPFYATATSGPSHAPTFTSTVEF 120
Query: 121 DGHTFESLEFFKNLKQAEHAAAKVALFSL 149
G F S E K K AE +AAKVA S+
Sbjct: 121 AGKVF-SGEEAKTKKLAEMSAAKVAFMSI 148
>gi|22331912|ref|NP_191839.2| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|42572769|ref|NP_974480.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|75244610|sp|Q8H1D4.1|DRB4_ARATH RecName: Full=Double-stranded RNA-binding protein 4; AltName:
Full=dsRNA-binding protein 4; Short=AtDRB4
gi|23297784|gb|AAN13025.1| unknown protein [Arabidopsis thaliana]
gi|332646872|gb|AEE80393.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|332646873|gb|AEE80394.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
Length = 355
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/158 (46%), Positives = 93/158 (58%), Gaps = 14/158 (8%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK LQ YA + NL+ P+Y++ REGP HA F+ VT G TF+S EFF LK AEHAAA
Sbjct: 5 YKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAAA 64
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
K+A+ SL E I V YKN+L E++ +E +P Y T G H
Sbjct: 65 KIAVASLTPQS-PEGI-------------DVAYKNLLQEIAQKESSLLPFYATATSGPSH 110
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
PTF S VE G+VF G+ +TKK AEM AAKVA+ ++
Sbjct: 111 APTFTSTVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSI 148
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 81/149 (54%), Gaps = 4/149 (2%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
+YK ++Q Q LP Y+ ++G H PRF+ +V+ G +F SS + K +++ A
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 61 AKLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTI 120
AK+A T P P + YK++LQ A++++ P Y++ GP+HA +F + V
Sbjct: 64 AKIAVASLT---PQSPEGIDVAYKNLLQEIAQKESSLLPFYATATSGPSHAPTFTSTVEF 120
Query: 121 DGHTFESLEFFKNLKQAEHAAAKVALFSL 149
G F S E K K AE +AAKVA S+
Sbjct: 121 AGKVF-SGEEAKTKKLAEMSAAKVAFMSI 148
>gi|357512161|ref|XP_003626369.1| Double-stranded RNA binding protein [Medicago truncatula]
gi|355501384|gb|AES82587.1| Double-stranded RNA binding protein [Medicago truncatula]
Length = 505
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 95/163 (58%), Gaps = 8/163 (4%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P YS IREGP HA FK V +G TFES F L+QAEHAAA
Sbjct: 2 YKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKVTVNFNGETFESPTFCSTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL +LA + + + D+ YKN+L E + R GL +P+Y TI+ G H
Sbjct: 62 EVALNTLATRGPSRTL------AARVLDETGVYKNLLQETAHRAGLNLPVYRTIRAGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKL 245
+P F VE+ G F G RTKK+A+ AA A++AL RKL
Sbjct: 116 VPNFYCTVEIAGMHFTGDPARTKKQAQKNAAIAAWSAL--RKL 156
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP YS +++G DH PRFK +V+ NG +F S C + +++++ A
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKVTVNFNGETFESPTFCSTLRQAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A + P + R YK++LQ A R L+ P+Y +IR GP H +
Sbjct: 61 AEVALNTLAT--RGPSRTLAARVLDETGVYKNLLQETAHRAGLNLPVYRTIRAGPGHVPN 118
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V I G F + + KQA+ AA A +L
Sbjct: 119 FYCTVEIAGMHFTG-DPARTKKQAQKNAAIAAWSAL 153
>gi|356504084|ref|XP_003520829.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 539
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 96/163 (58%), Gaps = 8/163 (4%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P YS IREGP HA FKA V +G TFES F L+QAEHAAA
Sbjct: 2 YKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGETFESPTFCSTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL +LA A+ + + D+ YKN+L E + R GL +P+Y TI+ G H
Sbjct: 62 EVALNTLAKRGPSRAL------AARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKL 245
P F VE+ G F G RTKK+A+ AA A++AL RKL
Sbjct: 116 GPNFSCTVEIAGMHFTGDPSRTKKQAQKNAAMAAWSAL--RKL 156
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 85/154 (55%), Gaps = 6/154 (3%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP YS +++G DH PRFK++V+ NG +F S C + +++++ A
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGETFESPTFCSTLRQAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-----YKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
A++A P + YK++LQ A R L+ P+Y++IR GP H +F
Sbjct: 61 AEVALNTLAKRGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHGPNFS 120
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V I G F + + KQA+ AA A +L
Sbjct: 121 CTVEIAGMHFTG-DPSRTKKQAQKNAAMAAWSAL 153
>gi|238480134|ref|NP_001154686.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
gi|197267565|dbj|BAG69145.1| dsRNA-binding protein [Arabidopsis thaliana]
gi|332646874|gb|AEE80395.1| double-stranded-RNA-binding protein 4 [Arabidopsis thaliana]
Length = 329
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/158 (46%), Positives = 93/158 (58%), Gaps = 14/158 (8%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK LQ YA + NL+ P+Y++ REGP HA F+ VT G TF+S EFF LK AEHAAA
Sbjct: 5 YKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAAA 64
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
K+A+ SL E I V YKN+L E++ +E +P Y T G H
Sbjct: 65 KIAVASLTPQS-PEGI-------------DVAYKNLLQEIAQKESSLLPFYATATSGPSH 110
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
PTF S VE G+VF G+ +TKK AEM AAKVA+ ++
Sbjct: 111 APTFTSTVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSI 148
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 81/149 (54%), Gaps = 4/149 (2%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
+YK ++Q Q LP Y+ ++G H PRF+ +V+ G +F SS + K +++ A
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 61 AKLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTI 120
AK+A T P P + YK++LQ A++++ P Y++ GP+HA +F + V
Sbjct: 64 AKIAVASLT---PQSPEGIDVAYKNLLQEIAQKESSLLPFYATATSGPSHAPTFTSTVEF 120
Query: 121 DGHTFESLEFFKNLKQAEHAAAKVALFSL 149
G F S E K K AE +AAKVA S+
Sbjct: 121 AGKVF-SGEEAKTKKLAEMSAAKVAFMSI 148
>gi|356571155|ref|XP_003553745.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 538
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 96/163 (58%), Gaps = 8/163 (4%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P YS IREGP HA FKA V +G TFES F L+QAEHAAA
Sbjct: 2 YKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGETFESPTFCSTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL ++A A+ + + D+ YKN+L E + R GL +P+Y TI+ G H
Sbjct: 62 EVALNTIAKRGPSGAL------AARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKL 245
P F VE+ G F G RTKK+A+ AA A++AL RKL
Sbjct: 116 GPNFSCSVEIAGMHFTGDPSRTKKQAQKNAAMAAWSAL--RKL 156
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 85/154 (55%), Gaps = 6/154 (3%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP YS +++G DH PRFK++V+ NG +F S C + +++++ A
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGETFESPTFCSTLRQAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-----YKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
A++A P + YK++LQ A R L+ P+Y++IR GP H +F
Sbjct: 61 AEVALNTIAKRGPSGALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHGPNFS 120
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V I G F + + KQA+ AA A +L
Sbjct: 121 CSVEIAGMHFTG-DPSRTKKQAQKNAAMAAWSAL 153
>gi|224104957|ref|XP_002313634.1| predicted protein [Populus trichocarpa]
gi|222850042|gb|EEE87589.1| predicted protein [Populus trichocarpa]
Length = 484
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 121/251 (48%), Gaps = 76/251 (30%)
Query: 82 RYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
+YKS LQNYAR KN D P Y + REGP+HA FKA
Sbjct: 160 KYKSHLQNYARWKNCDLPTYYNTREGPSHAPCFKAT------------------------ 195
Query: 142 AKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAP 201
DD FYKN L EL+ RE L +P+Y+ IK GA
Sbjct: 196 ----------------------------DDSGFYKNALQELAQREDLSMPVYKIIKSGAL 227
Query: 202 HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLPFHGGRSCSIGS 261
HMPTF S VE++GE FYGKAG++KK+AE+K+A+ AYT L+ER L
Sbjct: 228 HMPTFFSYVEIEGEKFYGKAGKSKKEAELKSARAAYTVLMERAL--------------NR 273
Query: 262 ITHTVKADGVPNSTLSS--DLDVTLDPNFIQ---KSMSVSSPVL---EHGEDGKDSMAAK 313
+ + P+ TL+S LD+T N Q ++ +SSPV+ EH + KD ++ K
Sbjct: 274 NAESDPPNFSPDETLNSTPGLDMTTAVNLQQHLKQNGQLSSPVIVDEEHSAETKDIISLK 333
Query: 314 RATVTSSYLLC 324
+V S L C
Sbjct: 334 --SVPSLELHC 342
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 65/74 (87%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
M KTK+QE+CH+++W LP+YS MKDG DH P FK+SV VNG+SFHSS SCKSSK++ NDA
Sbjct: 1 MDKTKLQEVCHKRQWGLPKYSAMKDGPDHTPCFKASVYVNGISFHSSASCKSSKDAHNDA 60
Query: 61 AKLAFLHFTSPPPP 74
AK+AFLHFTSPPPP
Sbjct: 61 AKMAFLHFTSPPPP 74
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 43/52 (82%)
Query: 313 KRATVTSSYLLCNRVRVYTRIPDIAFPKGITLMPISEDKWVAVSLEFPNEEG 364
++AT SYLLCNRVRVY PDIA P GIT+MPIS+++WVAVSLEFP E+G
Sbjct: 432 RKATRQRSYLLCNRVRVYPCYPDIALPNGITVMPISDNQWVAVSLEFPMEQG 483
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 84 KSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAK 143
K+ LQ ++ P YS++++GP H FKA V ++G +F S K+ K A + AAK
Sbjct: 3 KTKLQEVCHKRQWGLPKYSAMKDGPDHTPCFKASVYVNGISFHSSASCKSSKDAHNDAAK 62
Query: 144 VALF 147
+A
Sbjct: 63 MAFL 66
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
YK +QEL ++ S+P Y +K GA H P F S V + G F+ KS KE++ +A
Sbjct: 201 YKNALQELAQREDLSMPVYKIIKSGALHMPTFFSYVEIEGEKFYGKAG-KSKKEAELKSA 259
Query: 62 KLAF 65
+ A+
Sbjct: 260 RAAY 263
>gi|224130800|ref|XP_002328379.1| predicted protein [Populus trichocarpa]
gi|222838094|gb|EEE76459.1| predicted protein [Populus trichocarpa]
Length = 159
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 99/158 (62%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P YS IREGP HA FK+ V +G TFES F+ L+ AEHAAA
Sbjct: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKSTVNFNGETFESPTFYSTLRLAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL +LA +A+ ++ L + GV YKN+L E + R GL +P+Y TI+ G H
Sbjct: 62 EVALNTLASRGPSKAL-----IAGVLDETGV-YKNLLQETAHRAGLKLPVYTTIRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+P F VE+ G F G++ RTKK+A+ AA A++AL
Sbjct: 116 VPVFSCNVELAGMSFTGESARTKKQAQKNAAMAAWSAL 153
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 83/154 (53%), Gaps = 6/154 (3%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP YS +++G DH PRFKS+V+ NG +F S + + +++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKSTVNFNGETFESPTFYSTLRLAEHAA 60
Query: 61 AKLAFLHFTSPPPPPP-----PNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
A++A S P + YK++LQ A R L P+Y++IR GP H F
Sbjct: 61 AEVALNTLASRGPSKALIAGVLDETGVYKNLLQETAHRAGLKLPVYTTIRSGPGHVPVFS 120
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V + G +F E + KQA+ AA A +L
Sbjct: 121 CNVELAGMSFTG-ESARTKKQAQKNAAMAAWSAL 153
>gi|242089535|ref|XP_002440600.1| hypothetical protein SORBIDRAFT_09g003860 [Sorghum bicolor]
gi|241945885|gb|EES19030.1| hypothetical protein SORBIDRAFT_09g003860 [Sorghum bicolor]
Length = 573
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 91/158 (57%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P YS IREGP HA FKA V +G FES F L+QAEHAAA
Sbjct: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGEMFESPAFCSTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL L+ + + + D+ YKN+L E + R GL +P+Y TI+ G H
Sbjct: 62 EVALNELSKRGPSSTL------AAKVLDETGIYKNLLQETAHRAGLKLPIYTTIRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P F VE+ G+ F G G+TKK+A+ AA A++ L
Sbjct: 116 TPVFTCTVELAGKTFTGNPGKTKKQAQKNAAMAAWSDL 153
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP YS +++G DH PRFK++V+ NG F S C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGEMFESPAFCSTLRQAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A + P + + YK++LQ A R L P+Y++IR GP H
Sbjct: 61 AEVALNELSK--RGPSSTLAAKVLDETGIYKNLLQETAHRAGLKLPIYTTIRSGPGHTPV 118
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + G TF K KQA+ AA A L
Sbjct: 119 FTCTVELAGKTFTG-NPGKTKKQAQKNAAMAAWSDL 153
>gi|413917728|gb|AFW57660.1| hypothetical protein ZEAMMB73_615083 [Zea mays]
Length = 170
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 96/165 (58%), Gaps = 6/165 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P YS IREGP HA FKA V +G FES F L+QAEHAAA
Sbjct: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGEMFESPVFCSTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL L+ + + + D+ YKN+L E + R GL +P+Y TI+ G H
Sbjct: 62 EVALNELSKRGPSSTL------AAKVLDETGIYKNLLQETAHRAGLKLPIYTTIRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIF 247
P F VE+ G+ F G G+TKK+A+ AA A++ L +R+ +F
Sbjct: 116 TPVFACTVELAGKAFTGNPGKTKKQAQKNAAMAAWSELKKREYLF 160
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 81/150 (54%), Gaps = 6/150 (4%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP YS +++G DH PRFK++V+ NG F S V C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGEMFESPVFCSTLRQAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-----YKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
A++A + P + YK++LQ A R L P+Y++IR GP H F
Sbjct: 61 AEVALNELSKRGPSSTLAAKVLDETGIYKNLLQETAHRAGLKLPIYTTIRSGPGHTPVFA 120
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVA 145
V + G F K KQA+ AA A
Sbjct: 121 CTVELAGKAFTG-NPGKTKKQAQKNAAMAA 149
>gi|7362760|emb|CAB83130.1| putative protein [Arabidopsis thaliana]
Length = 345
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 89/158 (56%), Gaps = 24/158 (15%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK LQ YA + NL+ P+Y++ REGP HA F+ VT G TF+S EFF LK AEHAAA
Sbjct: 5 YKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAAA 64
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
K+A +A YKN+L E++ +E +P Y T G H
Sbjct: 65 KIAGIDVA------------------------YKNLLQEIAQKESSLLPFYATATSGPSH 100
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
PTF S VE G+VF G+ +TKK AEM AAKVA+ ++
Sbjct: 101 APTFTSTVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSI 138
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 78/149 (52%), Gaps = 14/149 (9%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
+YK ++Q Q LP Y+ ++G H PRF+ +V+ G +F SS + K +++ A
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 61 AKLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTI 120
AK+A + YK++LQ A++++ P Y++ GP+HA +F + V
Sbjct: 64 AKIA-------------GIDVAYKNLLQEIAQKESSLLPFYATATSGPSHAPTFTSTVEF 110
Query: 121 DGHTFESLEFFKNLKQAEHAAAKVALFSL 149
G F S E K K AE +AAKVA S+
Sbjct: 111 AGKVF-SGEEAKTKKLAEMSAAKVAFMSI 138
>gi|357134637|ref|XP_003568923.1| PREDICTED: double-stranded RNA-binding protein 2-like [Brachypodium
distachyon]
Length = 559
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 92/158 (58%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ IREGP HA FKA V +G +FES F L+QAEHAAA
Sbjct: 2 YKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGESFESPTFCSTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL L+ ++ + + D+ YKN+L E + R GL +P Y TI+ G H
Sbjct: 62 EVALNELSKRGPSSSL------AAKVLDETGIYKNLLQETAHRAGLKLPEYTTIRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P F VE+ G +F G G+TKK+A+ AA A++ L
Sbjct: 116 TPMFTCTVELAGRIFTGNPGKTKKQAQKNAAMAAWSEL 153
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y+ +++G DH PRFK++V+ NG SF S C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGESFESPTFCSTLRQAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A + P ++ + YK++LQ A R L P Y++IR GP H
Sbjct: 61 AEVALNELSK--RGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPEYTTIRSGPGHTPM 118
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + G F + K KQA+ AA A L
Sbjct: 119 FTCTVELAGRIF-TGNPGKTKKQAQKNAAMAAWSEL 153
>gi|226498844|ref|NP_001146621.1| uncharacterized protein LOC100280218 [Zea mays]
gi|219888055|gb|ACL54402.1| unknown [Zea mays]
gi|224029829|gb|ACN33990.1| unknown [Zea mays]
gi|413917729|gb|AFW57661.1| hypothetical protein ZEAMMB73_615083 [Zea mays]
gi|413917730|gb|AFW57662.1| hypothetical protein ZEAMMB73_615083 [Zea mays]
Length = 289
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 91/158 (57%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P YS IREGP HA FKA V +G FES F L+QAEHAAA
Sbjct: 2 YKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGEMFESPVFCSTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL L+ + + + D+ YKN+L E + R GL +P+Y TI+ G H
Sbjct: 62 EVALNELSKRGPSSTL------AAKVLDETGIYKNLLQETAHRAGLKLPIYTTIRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P F VE+ G+ F G G+TKK+A+ AA A++ L
Sbjct: 116 TPVFACTVELAGKAFTGNPGKTKKQAQKNAAMAAWSEL 153
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 82/154 (53%), Gaps = 6/154 (3%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP YS +++G DH PRFK++V+ NG F S V C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYSCIREGPDHAPRFKATVNFNGEMFESPVFCSTLRQAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-----YKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
A++A + P + YK++LQ A R L P+Y++IR GP H F
Sbjct: 61 AEVALNELSKRGPSSTLAAKVLDETGIYKNLLQETAHRAGLKLPIYTTIRSGPGHTPVFA 120
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V + G F K KQA+ AA A L
Sbjct: 121 CTVELAGKAFTG-NPGKTKKQAQKNAAMAAWSEL 153
>gi|222630219|gb|EEE62351.1| hypothetical protein OsJ_17140 [Oryza sativa Japonica Group]
Length = 606
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 91/158 (57%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ IREGP HA FKA V +G TFES F L+ AEHAAA
Sbjct: 15 YKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAAA 74
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL L+ ++ + + D+ YKN+L E + R GL +P+Y TI+ G H
Sbjct: 75 EVALNELSKRGPSSSL------AAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGH 128
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P F VE+ G F G G+TKK+A+ AA A++ L
Sbjct: 129 TPVFTCTVELAGMTFTGNPGKTKKQAQKNAAMAAWSEL 166
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y+ +++G DH PRFK++V+ NG +F S C + + +++ A
Sbjct: 14 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 73
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A + P ++ + YK++LQ A R L P+Y++IR GP H
Sbjct: 74 AEVALNELSK--RGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPV 131
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + G TF K KQA+ AA A L
Sbjct: 132 FTCTVELAGMTFTG-NPGKTKKQAQKNAAMAAWSEL 166
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 162 AHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKA 221
A + W YKN L EL+ R +P Y I+ G H P F + V +GE F A
Sbjct: 2 AMAGLASWRLAGMYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPA 61
Query: 222 -GRTKKKAEMKAAKVAYTALIERKLIFSL 249
T + AE AA+VA L +R SL
Sbjct: 62 FCSTLRLAEHAAAEVALNELSKRGPSSSL 90
>gi|387538565|gb|AFJ79551.1| double stranded RNA binding protein 3 [Oryza sativa Indica Group]
Length = 593
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 91/158 (57%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ IREGP HA FKA V +G TFES F L+ AEHAAA
Sbjct: 2 YKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL L+ ++ + + D+ YKN+L E + R GL +P+Y TI+ G H
Sbjct: 62 EVALNELSKRGPSSSL------AAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P F VE+ G F G G+TKK+A+ AA A++ L
Sbjct: 116 TPVFTCTVELAGMTFTGNPGKTKKQAQKNAAMAAWSEL 153
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y+ +++G DH PRFK++V+ NG +F S C + + +++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A + P ++ + YK++LQ A R L P+Y++IR GP H
Sbjct: 61 AEVALNELSK--RGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPV 118
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + G TF K KQA+ AA A L
Sbjct: 119 FTCTVELAGMTFTG-NPGKTKKQAQKNAAMAAWSEL 153
>gi|115462131|ref|NP_001054665.1| Os05g0150400 [Oryza sativa Japonica Group]
gi|122169532|sp|Q0DKP4.1|DRB2_ORYSJ RecName: Full=Double-stranded RNA-binding protein 2; AltName:
Full=dsRNA-binding protein 2; AltName:
Full=dsRNA-binding protein 3; Short=OsDRB3
gi|113578216|dbj|BAF16579.1| Os05g0150400 [Oryza sativa Japonica Group]
Length = 593
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 91/158 (57%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ IREGP HA FKA V +G TFES F L+ AEHAAA
Sbjct: 2 YKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL L+ ++ + + D+ YKN+L E + R GL +P+Y TI+ G H
Sbjct: 62 EVALNELSKRGPSSSL------AAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P F VE+ G F G G+TKK+A+ AA A++ L
Sbjct: 116 TPVFTCTVELAGMTFTGNPGKTKKQAQKNAAMAAWSEL 153
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y+ +++G DH PRFK++V+ NG +F S C + + +++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A + P ++ + YK++LQ A R L P+Y++IR GP H
Sbjct: 61 AEVALNELSK--RGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPV 118
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + G TF K KQA+ AA A L
Sbjct: 119 FTCTVELAGMTFTG-NPGKTKKQAQKNAAMAAWSEL 153
>gi|102139807|gb|ABF69992.1| double-stranded RNA-binding (DsRBD) domain-containing protein [Musa
acuminata]
Length = 610
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 93/158 (58%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+SIREGP HA FKA V +G FES F L+QAEH+AA
Sbjct: 2 YKNQLQELAQRSCFNLPSYASIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHSAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL +L+ ++ + + D+ YKN+L E + R GL +P+Y T++ G H
Sbjct: 62 EVALNTLSKRGPSRSL------AAKVLDETGIYKNLLQETAHRAGLKLPVYTTVRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P F VE+ G F G +TKK+A+ AA A++AL
Sbjct: 116 TPIFTCTVELAGMSFTGDPAKTKKQAQKNAAMAAWSAL 153
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 86/154 (55%), Gaps = 6/154 (3%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y+++++G DH PRFK++V+ NG +F S C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYASIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHSA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-----YKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
A++A + P + YK++LQ A R L P+Y+++R GP H F
Sbjct: 61 AEVALNTLSKRGPSRSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTVRSGPGHTPIFT 120
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V + G +F + K KQA+ AA A +L
Sbjct: 121 CTVELAGMSFTG-DPAKTKKQAQKNAAMAAWSAL 153
>gi|168043471|ref|XP_001774208.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162674476|gb|EDQ60984.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 577
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 96/160 (60%), Gaps = 6/160 (3%)
Query: 81 CRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHA 140
C YK+ LQ A+R ++ P Y+ IREGP HA FKA V+ +G FES + L+QAEHA
Sbjct: 18 CMYKNQLQELAQRSCINLPAYACIREGPDHAPRFKATVSFNGEIFESPNYCNTLRQAEHA 77
Query: 141 AAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGA 200
AA+VAL +L+ +++ + + D+ KN+L E + R G+ +P+Y T + G
Sbjct: 78 AAEVALNTLSRRGPSQSL------AARILDETGVCKNLLQETAQRAGVSLPVYSTTRSGP 131
Query: 201 PHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
H+P F VE+ F G+A +TKK+AE AA A++AL
Sbjct: 132 GHLPVFTCTVELAKMTFSGEAAKTKKQAEKNAAMAAWSAL 171
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 84/156 (53%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + +LP Y+ +++G DH PRFK++VS NG F S C + +++++ A
Sbjct: 19 MYKNQLQELAQRSCINLPAYACIREGPDHAPRFKATVSFNGEIFESPNYCNTLRQAEHAA 78
Query: 61 AKLAFLHFTSPPPPPPPNVQCRY-------KSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A + P ++ R K++LQ A+R + P+YS+ R GP H
Sbjct: 79 AEVALNTLSR--RGPSQSLAARILDETGVCKNLLQETAQRAGVSLPVYSTTRSGPGHLPV 136
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + TF S E K KQAE AA A +L
Sbjct: 137 FTCTVELAKMTF-SGEAAKTKKQAEKNAAMAAWSAL 171
>gi|255543655|ref|XP_002512890.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223547901|gb|EEF49393.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 477
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 94/158 (59%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+ LQ A+R + P Y+ +REGP HA FKA V +G FES + L+QAEHAAA
Sbjct: 5 FKNQLQELAQRSCFNLPSYACVREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 64
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL L+ ++ + + D+ YKN+L E + R GL +P+Y TI+ G H
Sbjct: 65 EVALNVLSSRGPSRSL------TARVLDETGIYKNLLQETAHRAGLNLPVYTTIRSGPGH 118
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+PTF VE+ G F G+ +TKK+AE AA A++AL
Sbjct: 119 VPTFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 156
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 86/154 (55%), Gaps = 6/154 (3%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
M+K ++QEL + ++LP Y+ +++G DH PRFK+SV+ NG F S C + +++++ A
Sbjct: 4 MFKNQLQELAQRSCFNLPSYACVREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 63
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-----YKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
A++A +S P + YK++LQ A R L+ P+Y++IR GP H +F
Sbjct: 64 AEVALNVLSSRGPSRSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTIRSGPGHVPTFT 123
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V + G F E K KQAE AA A +L
Sbjct: 124 CTVELAGMNFTG-EPAKTKKQAEKNAAIAAWSAL 156
>gi|414888358|tpg|DAA64372.1| TPA: hypothetical protein ZEAMMB73_304518 [Zea mays]
Length = 246
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 101/265 (38%), Positives = 130/265 (49%), Gaps = 44/265 (16%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSC-KSSKESQND 59
MYK+++QELC ++RW+ Y ++G H P F ++V VNG F S KS KE+ N
Sbjct: 1 MYKSRLQELCQKRRWASSLYEPTREGPAHAPLFHATVIVNGERFSSRDEGEKSLKEAYNL 60
Query: 60 AAKLAFLHF---------TSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAH 110
A AF + + P PPP Q YKS LQ YA+++ P Y IR G
Sbjct: 61 TAMAAFDNLIPLPAVALAPAAPAPPPSETQLPYKSQLQIYAQKRGKLLPSYRLIRVGSLG 120
Query: 111 ACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWD 170
A FK+ VTIDG TFES E+ +K+AE AAKVAL SL QEA
Sbjct: 121 APLFKSEVTIDGQTFESPEYCHTIKEAETVAAKVALMSLP----QEA------------- 163
Query: 171 DGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEM 230
N +L + GL V Y F+S VE+ G F+GK G TKK+AEM
Sbjct: 164 ------NPTQQLLV--GLDVSNYSA---------GFVSTVEIQGVTFHGKRGNTKKQAEM 206
Query: 231 KAAKVAYTALIERKLIFSLPFHGGR 255
AAK A+ L + SL G+
Sbjct: 207 NAAKSAFEHLKTDAGLVSLSRGDGK 231
>gi|225435325|ref|XP_002285171.1| PREDICTED: double-stranded RNA-binding protein 2-like [Vitis
vinifera]
Length = 413
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 92/158 (58%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ IREGP HA FKA V +G FES + L+QAEH+AA
Sbjct: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL SL+ ++ + + D+ YKN+L E++ R G P+P Y T + G H
Sbjct: 62 EVALNSLSNRGPSHSL------AARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+P F VE+ G F G+ + KK+AE AA A+++L
Sbjct: 116 LPVFTGTVELAGITFTGEPAKNKKQAEKNAAMAAWSSL 153
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 85/156 (54%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y+ +++G DH PRFK++V+ NG F S C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A ++ P ++ R YK++LQ A+R P Y++ R G H
Sbjct: 61 AEVALNSLSN--RGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPV 118
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + G TF E KN KQAE AA A SL
Sbjct: 119 FTGTVELAGITFTG-EPAKNKKQAEKNAAMAAWSSL 153
>gi|356543448|ref|XP_003540172.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 411
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 93/158 (58%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ IREGP HA FKA V +G FES + L+QAEH+AA
Sbjct: 2 YKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL SL+ ++ + + D+ YKN+L E++ R G P+P Y T + G H
Sbjct: 62 EVALNSLSHRGPSHSL------AAKILDETGVYKNLLQEIAQRVGAPLPHYTTYRSGLGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+P F +VE+ G F G+ + KK+AE AA A++AL
Sbjct: 116 LPVFTGIVELAGITFTGEPAKNKKQAEKNAAMAAWSAL 153
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y+ +++G DH PRFK++V+ NG F S C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A + P ++ + YK++LQ A+R P Y++ R G H
Sbjct: 61 AEVALNSLSH--RGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPHYTTYRSGLGHLPV 118
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + G TF E KN KQAE AA A +L
Sbjct: 119 FTGIVELAGITFTG-EPAKNKKQAEKNAAMAAWSAL 153
>gi|297746261|emb|CBI16317.3| unnamed protein product [Vitis vinifera]
Length = 280
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 92/158 (58%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ IREGP HA FKA V +G FES + L+QAEH+AA
Sbjct: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL SL+ ++ + + D+ YKN+L E++ R G P+P Y T + G H
Sbjct: 62 EVALNSLSNRGPSHSL------AARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+P F VE+ G F G+ + KK+AE AA A+++L
Sbjct: 116 LPVFTGTVELAGITFTGEPAKNKKQAEKNAAMAAWSSL 153
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 85/156 (54%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y+ +++G DH PRFK++V+ NG F S C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A ++ P ++ R YK++LQ A+R P Y++ R G H
Sbjct: 61 AEVALNSLSN--RGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPV 118
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + G TF E KN KQAE AA A SL
Sbjct: 119 FTGTVELAGITFTG-EPAKNKKQAEKNAAMAAWSSL 153
>gi|357453939|ref|XP_003597250.1| Ribonuclease [Medicago truncatula]
gi|355486298|gb|AES67501.1| Ribonuclease [Medicago truncatula]
Length = 408
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 93/158 (58%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ IREGP HA FKA V +G FES + L+QAEH+AA
Sbjct: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL SL+ ++ + + D+ YKN+L E++ R G P+P Y T + G H
Sbjct: 62 EVALNSLSHRGPSHSL------AAKILDETGVYKNLLQEIAQRVGAPLPQYTTYRSGLGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+P F +VE+ G F G+ + KK+AE AA A+++L
Sbjct: 116 LPVFTGIVELAGITFTGEPAKNKKQAEKNAAMAAWSSL 153
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y+ +++G DH PRFK++V+ NG F S C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A + P ++ + YK++LQ A+R P Y++ R G H
Sbjct: 61 AEVALNSLSH--RGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTYRSGLGHLPV 118
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + G TF E KN KQAE AA A SL
Sbjct: 119 FTGIVELAGITFTG-EPAKNKKQAEKNAAMAAWSSL 153
>gi|168043507|ref|XP_001774226.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162674494|gb|EDQ61002.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 683
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 94/160 (58%), Gaps = 6/160 (3%)
Query: 81 CRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHA 140
C YK+ LQ A+R + P Y+ IREGP HA FKA V +G FES + L+QAEHA
Sbjct: 64 CMYKNQLQELAQRSCFNLPAYACIREGPDHAPRFKATVNFNGEVFESPNYCNTLRQAEHA 123
Query: 141 AAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGA 200
AA+VAL +L+ +++ + + D+ KN+L E + R G+ +P+Y T + G
Sbjct: 124 AAEVALNTLSRRGPSQSL------AARILDETGVCKNLLQETAQRAGVSLPVYATTRSGP 177
Query: 201 PHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
H+P F VEV F G+A +TKK+AE AA A++A+
Sbjct: 178 GHLPVFTCTVEVANMSFSGEAAKTKKQAEKNAAMAAWSAI 217
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 85/156 (54%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y+ +++G DH PRFK++V+ NG F S C + +++++ A
Sbjct: 65 MYKNQLQELAQRSCFNLPAYACIREGPDHAPRFKATVNFNGEVFESPNYCNTLRQAEHAA 124
Query: 61 AKLAFLHFTSPPPPPPPNVQCRY-------KSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A + P ++ R K++LQ A+R + P+Y++ R GP H
Sbjct: 125 AEVALNTLSR--RGPSQSLAARILDETGVCKNLLQETAQRAGVSLPVYATTRSGPGHLPV 182
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + +F S E K KQAE AA A ++
Sbjct: 183 FTCTVEVANMSF-SGEAAKTKKQAEKNAAMAAWSAI 217
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 169 WDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYG-KAGRTKKK 227
W YKN L EL+ R +P Y I+ G H P F + V +GEVF T ++
Sbjct: 60 WAFDCMYKNQLQELAQRSCFNLPAYACIREGPDHAPRFKATVNFNGEVFESPNYCNTLRQ 119
Query: 228 AEMKAAKVAYTALIER 243
AE AA+VA L R
Sbjct: 120 AEHAAAEVALNTLSRR 135
>gi|388495920|gb|AFK36026.1| unknown [Lotus japonicus]
Length = 170
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 92/158 (58%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P YS IREGP HA FKA V +G FES F L+QAEHAAA
Sbjct: 2 YKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL + A A+ + + D+ YKN+L E + R GL +P+Y TI+ G H
Sbjct: 62 EVALNTFAERGPSRAL------AARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+P + VE+ G F G RTKK+A+ AA A++AL
Sbjct: 116 VPNYSCTVEIAGMHFTGDPARTKKQAQKNAAMAAWSAL 153
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 93/171 (54%), Gaps = 9/171 (5%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP YS +++G DH PRFK++V+ NG +F S C + +++++ A
Sbjct: 1 MYKNRLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEAFESPTFCSTLRQAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-----YKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
A++A F P + YK++LQ A R L+ P+Y++IR GP H ++
Sbjct: 61 AEVALNTFAERGPSRALAARVLDETGVYKNLLQETAHRAGLNLPVYTTIRSGPGHVPNYS 120
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL-ACDDFQEAI--FLYAH 163
V I G F + + KQA+ AA A +L C+ F I F Y H
Sbjct: 121 CTVEIAGMHFTG-DPARTKKQAQKNAAMAAWSALRKCEHFAAVIASFSYLH 170
>gi|147820257|emb|CAN71476.1| hypothetical protein VITISV_038619 [Vitis vinifera]
Length = 552
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 103/185 (55%), Gaps = 19/185 (10%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+ LQ A+R + P Y+ IREGP HA FKA V +G FES + L+QAEHAAA
Sbjct: 73 FKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 132
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL L+ ++ + + D+ YKN+L E + R GL +P+Y T++ G H
Sbjct: 133 EVALNVLSTRGPSRSL------TARVLDETGVYKNLLQETAHRAGLNLPVYTTVRSGPGH 186
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLPFHGGRSCSIGSI 262
+P F VE+ G F G++ +TKK+AE AA A++AL R ++GS+
Sbjct: 187 VPVFTCTVELAGMNFTGESAKTKKQAEKNAAIAAWSAL-------------KRVPNLGSL 233
Query: 263 THTVK 267
+H K
Sbjct: 234 SHLSK 238
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 87/156 (55%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
M+K ++QEL + ++LP Y+ +++G DH PRFK+SV+ NG F S C + +++++ A
Sbjct: 72 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 131
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A ++ P ++ R YK++LQ A R L+ P+Y+++R GP H
Sbjct: 132 AEVALNVLST--RGPSRSLTARVLDETGVYKNLLQETAHRAGLNLPVYTTVRSGPGHVPV 189
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + G F E K KQAE AA A +L
Sbjct: 190 FTCTVELAGMNFTG-ESAKTKKQAEKNAAIAAWSAL 224
>gi|296082307|emb|CBI21312.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 103/185 (55%), Gaps = 19/185 (10%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+ LQ A+R + P Y+ IREGP HA FKA V +G FES + L+QAEHAAA
Sbjct: 2 FKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL L+ ++ + + D+ YKN+L E + R GL +P+Y T++ G H
Sbjct: 62 EVALNVLSTRGPSRSL------TARVLDETGVYKNLLQETAHRAGLNLPVYTTVRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLPFHGGRSCSIGSI 262
+P F VE+ G F G++ +TKK+AE AA A++AL R ++GS+
Sbjct: 116 VPVFTCTVELAGMNFTGESAKTKKQAEKNAAIAAWSAL-------------KRVPNLGSL 162
Query: 263 THTVK 267
+H K
Sbjct: 163 SHLSK 167
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 87/156 (55%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
M+K ++QEL + ++LP Y+ +++G DH PRFK+SV+ NG F S C + +++++ A
Sbjct: 1 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A ++ P ++ R YK++LQ A R L+ P+Y+++R GP H
Sbjct: 61 AEVALNVLST--RGPSRSLTARVLDETGVYKNLLQETAHRAGLNLPVYTTVRSGPGHVPV 118
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + G F E K KQAE AA A +L
Sbjct: 119 FTCTVELAGMNFTG-ESAKTKKQAEKNAAIAAWSAL 153
>gi|359488565|ref|XP_002275052.2| PREDICTED: double-stranded RNA-binding protein 5 [Vitis vinifera]
Length = 484
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 103/185 (55%), Gaps = 19/185 (10%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+ LQ A+R + P Y+ IREGP HA FKA V +G FES + L+QAEHAAA
Sbjct: 5 FKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 64
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL L+ ++ + + D+ YKN+L E + R GL +P+Y T++ G H
Sbjct: 65 EVALNVLSTRGPSRSL------TARVLDETGVYKNLLQETAHRAGLNLPVYTTVRSGPGH 118
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLPFHGGRSCSIGSI 262
+P F VE+ G F G++ +TKK+AE AA A++AL R ++GS+
Sbjct: 119 VPVFTCTVELAGMNFTGESAKTKKQAEKNAAIAAWSAL-------------KRVPNLGSL 165
Query: 263 THTVK 267
+H K
Sbjct: 166 SHLSK 170
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 87/156 (55%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
M+K ++QEL + ++LP Y+ +++G DH PRFK+SV+ NG F S C + +++++ A
Sbjct: 4 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 63
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A ++ P ++ R YK++LQ A R L+ P+Y+++R GP H
Sbjct: 64 AEVALNVLST--RGPSRSLTARVLDETGVYKNLLQETAHRAGLNLPVYTTVRSGPGHVPV 121
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + G F E K KQAE AA A +L
Sbjct: 122 FTCTVELAGMNFTG-ESAKTKKQAEKNAAIAAWSAL 156
>gi|225432380|ref|XP_002276654.1| PREDICTED: double-stranded RNA-binding protein 2-like [Vitis
vinifera]
Length = 563
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 94/158 (59%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ IREGP HA FKA V +G FES F L+QAEHAAA
Sbjct: 2 YKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEVFESPTFCNTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL L+ + +A+ + + D+ YKN+L E + R GL +P+Y T++ G H
Sbjct: 62 EVALNVLSKNGPSKAL------AAKVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+P F V++ F G+ +TKK+A+ AA A++AL
Sbjct: 116 IPVFFCTVDIAKMSFTGEPAKTKKQAQKNAAMAAWSAL 153
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 83/154 (53%), Gaps = 6/154 (3%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y+ +++G DH PRFK++V+ NG F S C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEVFESPTFCNTLRQAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-----YKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
A++A + P + YK++LQ A R L P+Y+++R GP H F
Sbjct: 61 AEVALNVLSKNGPSKALAAKVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHIPVFF 120
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V I +F E K KQA+ AA A +L
Sbjct: 121 CTVDIAKMSFTG-EPAKTKKQAQKNAAMAAWSAL 153
>gi|449443363|ref|XP_004139447.1| PREDICTED: double-stranded RNA-binding protein 2-like [Cucumis
sativus]
Length = 414
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 93/158 (58%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ IREGP HA FKA V +G FE ++ L+QAEH+AA
Sbjct: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL +L+ ++ + + D+ YKN+L E++ R G P+P Y T + G H
Sbjct: 62 EVALNALSNRGPPHSL------AARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+P F +VE+ G F G+ + KK+AE AA A++AL
Sbjct: 116 LPVFTGIVELAGITFTGEPAKNKKQAEKNAAMAAWSAL 153
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y+ +++G DH PRFK++V+ NG F C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A ++ PP ++ R YK++LQ A+R P Y++ R G H
Sbjct: 61 AEVALNALSN--RGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPV 118
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + G TF E KN KQAE AA A +L
Sbjct: 119 FTGIVELAGITFTG-EPAKNKKQAEKNAAMAAWSAL 153
>gi|449523610|ref|XP_004168816.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-binding protein
2-like [Cucumis sativus]
Length = 414
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 93/158 (58%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ IREGP HA FKA V +G FE ++ L+QAEH+AA
Sbjct: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL +L+ ++ + + D+ YKN+L E++ R G P+P Y T + G H
Sbjct: 62 EVALNALSNRGPPHSL------AARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+P F +VE+ G F G+ + KK+AE AA A++AL
Sbjct: 116 LPVFTGIVELAGITFTGEPAKNKKQAEKNAAMAAWSAL 153
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y+ +++G DH PRFK++V+ NG F C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPQYCSTLRQAEHSA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A ++ PP ++ R YK++LQ A+R P Y++ R G H
Sbjct: 61 AEVALNALSN--RGPPHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPV 118
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + G TF E KN KQAE AA A +L
Sbjct: 119 FTGIVELAGITFTG-EPAKNKKQAEKNAAMAAWSAL 153
>gi|147853140|emb|CAN80689.1| hypothetical protein VITISV_005501 [Vitis vinifera]
Length = 403
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 92/158 (58%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ IREGP HA FKA V +G FES + L+QAEH+AA
Sbjct: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL SL+ ++ + + D+ YKN+L E++ R G P+P Y T + G H
Sbjct: 62 EVALNSLSNRGPSHSL------AARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+P F VE+ G F G+ + KK+AE AA A+++L
Sbjct: 116 LPVFTGTVELAGITFTGEPAKNKKQAEKNAAMAAWSSL 153
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 85/156 (54%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y+ +++G DH PRFK++V+ NG F S C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPNYCTTLRQAEHSA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A ++ P ++ R YK++LQ A+R P Y++ R G H
Sbjct: 61 AEVALNSLSN--RGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPV 118
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + G TF E KN KQAE AA A SL
Sbjct: 119 FTGTVELAGITFTG-EPAKNKKQAEKNAAMAAWSSL 153
>gi|297821192|ref|XP_002878479.1| double-stranded RNA-binding domain (dsrbd)-containing protein 4
[Arabidopsis lyrata subsp. lyrata]
gi|297324317|gb|EFH54738.1| double-stranded RNA-binding domain (dsrbd)-containing protein 4
[Arabidopsis lyrata subsp. lyrata]
Length = 343
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 88/158 (55%), Gaps = 24/158 (15%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK LQ YA + NL+ P+Y++ REGP HA F+ +VT G TF+SLEFF LK AEHAAA
Sbjct: 5 YKGQLQAYALKHNLELPVYANEREGPPHAPRFRCKVTFCGQTFQSLEFFPTLKSAEHAAA 64
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
K+AL SL + I + +E +P+Y T G H
Sbjct: 65 KIALASLTPQSPEAKI------------------------AQKENSMLPVYATATSGPSH 100
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
PTFIS VE G+VF G +TKK AEM AAK+A+ ++
Sbjct: 101 SPTFISTVEFAGKVFTGDEAKTKKLAEMSAAKIAFMSI 138
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 14/149 (9%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
+YK ++Q + LP Y+ ++G H PRF+ V+ G +F S + K +++ A
Sbjct: 4 VYKGQLQAYALKHNLELPVYANEREGPPHAPRFRCKVTFCGQTFQSLEFFPTLKSAEHAA 63
Query: 61 AKLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTI 120
AK+A T P P + A+++N P+Y++ GP+H+ +F + V
Sbjct: 64 AKIALASLT----PQSPEAK---------IAQKENSMLPVYATATSGPSHSPTFISTVEF 110
Query: 121 DGHTFESLEFFKNLKQAEHAAAKVALFSL 149
G F E K K AE +AAK+A S+
Sbjct: 111 AGKVFTGDE-AKTKKLAEMSAAKIAFMSI 138
>gi|297736909|emb|CBI26110.3| unnamed protein product [Vitis vinifera]
Length = 826
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 94/158 (59%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ IREGP HA FKA V +G FES F L+QAEHAAA
Sbjct: 2 YKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEVFESPTFCNTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL L+ + +A+ + + D+ YKN+L E + R GL +P+Y T++ G H
Sbjct: 62 EVALNVLSKNGPSKAL------AAKVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+P F V++ F G+ +TKK+A+ AA A++AL
Sbjct: 116 IPVFFCTVDIAKMSFTGEPAKTKKQAQKNAAMAAWSAL 153
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 83/154 (53%), Gaps = 6/154 (3%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y+ +++G DH PRFK++V+ NG F S C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGEVFESPTFCNTLRQAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-----YKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
A++A + P + YK++LQ A R L P+Y+++R GP H F
Sbjct: 61 AEVALNVLSKNGPSKALAAKVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHIPVFF 120
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V I +F E K KQA+ AA A +L
Sbjct: 121 CTVDIAKMSFTG-EPAKTKKQAQKNAAMAAWSAL 153
>gi|168048373|ref|XP_001776641.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162671933|gb|EDQ58477.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 1053
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 94/179 (52%), Gaps = 21/179 (11%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ IREGP HA FKA V +G FES + L+QAEHAAA
Sbjct: 231 YKNQLQELAQRSCFNLPAYACIREGPDHAPRFKATVNFNGEVFESPNYCNTLRQAEHAAA 290
Query: 143 KVALFSLA----CDDFQEAIFLYAHV-----------------SMYLWDDGVFYKNVLHE 181
+VAL +L+ I + V M +WD+ KN+L E
Sbjct: 291 EVALNTLSRRGPSQSLAARILVSGAVIGAGCGGMNGGMGWEEQGMRVWDETGVCKNLLQE 350
Query: 182 LSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+ R G+ +P+Y T + G H+P F VEV F G+A +TKK+AE AA A++AL
Sbjct: 351 TAQRAGVSLPVYATTRSGPGHLPVFTCTVEVASMTFSGEAAKTKKQAEKNAAMAAWSAL 409
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 84/183 (45%), Gaps = 37/183 (20%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y+ +++G DH PRFK++V+ NG F S C + +++++ A
Sbjct: 230 MYKNQLQELAQRSCFNLPAYACIREGPDHAPRFKATVNFNGEVFESPNYCNTLRQAEHAA 289
Query: 61 AKLAFLHFTSPPPPPPPNVQ----------------------------------CRYKSV 86
A++A + P + C K++
Sbjct: 290 AEVALNTLSRRGPSQSLAARILVSGAVIGAGCGGMNGGMGWEEQGMRVWDETGVC--KNL 347
Query: 87 LQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVAL 146
LQ A+R + P+Y++ R GP H F V + TF S E K KQAE AA A
Sbjct: 348 LQETAQRAGVSLPVYATTRSGPGHLPVFTCTVEVASMTF-SGEAAKTKKQAEKNAAMAAW 406
Query: 147 FSL 149
+L
Sbjct: 407 SAL 409
>gi|302793885|ref|XP_002978707.1| hypothetical protein SELMODRAFT_418544 [Selaginella moellendorffii]
gi|300153516|gb|EFJ20154.1| hypothetical protein SELMODRAFT_418544 [Selaginella moellendorffii]
Length = 675
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 130/245 (53%), Gaps = 33/245 (13%)
Query: 79 VQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAE 138
+Q +K+ LQ A+R + P YS IREGP HA FKA V +G FES +F L+ AE
Sbjct: 1 MQGMFKNQLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEVFESPTYFSTLRHAE 60
Query: 139 HAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKC 198
HAAA+VAL +L+ +++ + + D+ YKN+L E + R G+P+P+Y T++
Sbjct: 61 HAAAEVALNTLSRRGPPQSL------AARILDETGVYKNLLQETAQRAGVPLPIYTTVRS 114
Query: 199 GAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLPFHGGRSCS 258
G H+P F V V G +F G+A +TKK+AE AA A++
Sbjct: 115 GPGHLPVFTCTVGVGGMIFTGEAAKTKKQAEKNAAMTAWS-------------------- 154
Query: 259 IGSITHTVKADGVPNSTLSSDLDVTLDPNFIQKSMSVSSPVLEHGEDGKDSMAAKRATVT 318
S+ K G + L S++ + NF+ ++++ + HG+D + + A+++T +
Sbjct: 155 --SLKQYAKQGGTSATLLESEVTEEQEQNFVARALARA-----HGKDERSVLLAQQSTPS 207
Query: 319 SSYLL 323
+ LL
Sbjct: 208 RTRLL 212
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 78/158 (49%), Gaps = 14/158 (8%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSV--SCKSSKESQN 58
M+K ++QEL + ++LP YS +++G DH PRFK++V+ NG F S S E
Sbjct: 4 MFKNQLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEVFESPTYFSTLRHAEHAA 63
Query: 59 DAAKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHA 111
L L PP ++ R YK++LQ A+R + P+Y+++R GP H
Sbjct: 64 AEVALNTLSRRG----PPQSLAARILDETGVYKNLLQETAQRAGVPLPIYTTVRSGPGHL 119
Query: 112 CSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + G F E K KQAE AA A SL
Sbjct: 120 PVFTCTVGVGGMIFTG-EAAKTKKQAEKNAAMTAWSSL 156
>gi|9759153|dbj|BAB09709.1| unnamed protein product [Arabidopsis thaliana]
Length = 384
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 98/162 (60%), Gaps = 6/162 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ IREGP HA FKA V +G FES + L+QAEHAAA
Sbjct: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+V+L L+ +++ + + D+ YKN+L E + R GL +P+Y +++ G+ H
Sbjct: 62 EVSLNVLSSRVPSKSL------TAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERK 244
P F VE+ G F G++ +TKK+AE AA A+++L ++K
Sbjct: 116 FPGFSCTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKKK 157
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 89/163 (54%), Gaps = 6/163 (3%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y+ +++G DH PRFK+SV+ NG F S C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-----YKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
A+++ +S P + YK++LQ A R LD P+Y+S+R G H F
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAI 158
V + G TF E K KQAE AA A SL QEA+
Sbjct: 121 CTVELAGMTFTG-ESAKTKKQAEKNAAIAAWSSLKKKKEQEAV 162
>gi|359806420|ref|NP_001241242.1| uncharacterized protein LOC100812728 [Glycine max]
gi|255644888|gb|ACU22944.1| unknown [Glycine max]
Length = 401
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 93/158 (58%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ IREGP HA FKA V +G FES + L+QAEH+AA
Sbjct: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL SL+ ++ + + D+ YKN+L E++ R G P+P Y T + G H
Sbjct: 62 EVALNSLSNRAPSHSL------AARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+P F VE+ G +F G+ + KK+AE AA A+++L
Sbjct: 116 LPVFTGTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSL 153
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y+ +++G DH PRFK++V+ NG F S C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A ++ P ++ R YK++LQ A+R P Y + R G H
Sbjct: 61 AEVALNSLSN--RAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPV 118
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + G F E KN KQAE AA A SL
Sbjct: 119 FTGTVELAGIMFTG-EPAKNKKQAEKNAAMAAWSSL 153
>gi|356539370|ref|XP_003538171.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 411
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 93/158 (58%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ IREGP HA FKA V +G FES + L+QAEH+AA
Sbjct: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL SL+ ++ + + D+ YKN+L E++ R G P+P Y T + G H
Sbjct: 62 EVALNSLSNRAPSHSL------AARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+P F VE+ G +F G+ + KK+AE AA A+++L
Sbjct: 116 LPVFTGTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSL 153
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y+ +++G DH PRFK++V+ NG F S C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A ++ P ++ R YK++LQ A+R P Y + R G H
Sbjct: 61 AEVALNSLSN--RAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPV 118
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + G F E KN KQAE AA A SL
Sbjct: 119 FTGTVELAGIMFTG-EPAKNKKQAEKNAAMAAWSSL 153
>gi|297822435|ref|XP_002879100.1| dsRNA-binding protein 2 [Arabidopsis lyrata subsp. lyrata]
gi|297324939|gb|EFH55359.1| dsRNA-binding protein 2 [Arabidopsis lyrata subsp. lyrata]
Length = 436
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 92/158 (58%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ IREGP HA FKA V +G FES ++ L+QAEH+AA
Sbjct: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL +L+ ++ S L + GV YKN+L E++ R G P+P Y T + G H
Sbjct: 62 EVALNALSNRGPSHSL-----ASRILDETGV-YKNLLQEIAQRVGAPLPRYTTFRSGLGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P F VE+ G F G + KK+AE AA A+++L
Sbjct: 116 QPVFTGTVELAGITFTGDPAKNKKQAEKNAAMAAWSSL 153
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y+ +++G DH PRFK++V+ NG F S C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A ++ P ++ R YK++LQ A+R P Y++ R G H
Sbjct: 61 AEVALNALSN--RGPSHSLASRILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPV 118
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + G TF + KN KQAE AA A SL
Sbjct: 119 FTGTVELAGITFTG-DPAKNKKQAEKNAAMAAWSSL 153
>gi|18401724|ref|NP_565672.1| dsRNA-binding protein 2 [Arabidopsis thaliana]
gi|75266001|sp|Q9SKN2.1|DRB2_ARATH RecName: Full=Double-stranded RNA-binding protein 2; AltName:
Full=dsRNA-binding protein 2; Short=AtDRB2
gi|4432839|gb|AAD20688.1| expressed protein [Arabidopsis thaliana]
gi|14334606|gb|AAK59481.1| unknown protein [Arabidopsis thaliana]
gi|17065634|gb|AAL33811.1| unknown protein [Arabidopsis thaliana]
gi|330253020|gb|AEC08114.1| dsRNA-binding protein 2 [Arabidopsis thaliana]
Length = 434
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 91/158 (57%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ IREGP HA FKA V +G FES ++ L+QAEH+AA
Sbjct: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL +L+ ++ + + D+ YKN+L E++ R G P+P Y T + G H
Sbjct: 62 EVALNALSNRGPSHSL------AARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P F VE+ G F G + KK+AE AA A+++L
Sbjct: 116 QPVFTGTVELAGITFTGDPAKNKKQAEKNAAMAAWSSL 153
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y+ +++G DH PRFK++V+ NG F S C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A ++ P ++ R YK++LQ A+R P Y++ R G H
Sbjct: 61 AEVALNALSN--RGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPV 118
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + G TF + KN KQAE AA A SL
Sbjct: 119 FTGTVELAGITFTG-DPAKNKKQAEKNAAMAAWSSL 153
>gi|224055781|ref|XP_002298650.1| predicted protein [Populus trichocarpa]
gi|222845908|gb|EEE83455.1| predicted protein [Populus trichocarpa]
Length = 357
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 93/158 (58%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+ LQ A+R + P Y+ IREGP HA FKA V +G FES + L+QAEHAAA
Sbjct: 2 FKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL L+ ++ + + D+ YKN+L E + R GL +P+Y T++ G H
Sbjct: 62 EVALNVLSLRGPARSL------TARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+P F VE+ G F G+ +TKK+AE AA A++AL
Sbjct: 116 VPVFTCTVELAGMNFTGEPAKTKKQAEKNAAIAAWSAL 153
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 6/154 (3%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
M+K ++QEL + ++LP Y+ +++G DH PRFK+SV+ NG F S C + +++++ A
Sbjct: 1 MFKNQLQELAQRSCFNLPSYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
Query: 61 AKLAF--LHFTSPPPPPPPNV---QCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
A++A L P V YK++LQ A R L+ P+Y+++R GP H F
Sbjct: 61 AEVALNVLSLRGPARSLTARVLDETGIYKNLLQETAHRAGLNLPVYTTVRSGPGHVPVFT 120
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V + G F E K KQAE AA A +L
Sbjct: 121 CTVELAGMNFTG-EPAKTKKQAEKNAAIAAWSAL 153
>gi|255578155|ref|XP_002529947.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223530577|gb|EEF32455.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 464
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 90/158 (56%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ IREGP HA FKA V +G FE + L+QAEH+AA
Sbjct: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPHYCSTLRQAEHSAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL SL+ ++ + + D+ YKN+L E++ R G P+P Y T + G H
Sbjct: 62 EVALTSLSNRGPSHSL------AARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P F VE+ G F G+ + KK+AE AA A+++L
Sbjct: 116 QPVFTGTVELAGITFTGEPAKNKKQAEKNAAMAAWSSL 153
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y+ +++G DH PRFK++V+ NG F C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFECPHYCSTLRQAEHSA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A ++ P ++ R YK++LQ A+R P Y++ R G H
Sbjct: 61 AEVALTSLSN--RGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHQPV 118
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + G TF E KN KQAE AA A SL
Sbjct: 119 FTGTVELAGITFTG-EPAKNKKQAEKNAAMAAWSSL 153
>gi|297818244|ref|XP_002877005.1| dsRNA-binding protein 3 [Arabidopsis lyrata subsp. lyrata]
gi|297322843|gb|EFH53264.1| dsRNA-binding protein 3 [Arabidopsis lyrata subsp. lyrata]
Length = 356
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 100/171 (58%), Gaps = 8/171 (4%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ REGP HA FKA V +G FES + L+QAEH+AA
Sbjct: 2 YKNQLQELAQRSCFNLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL +L+ +++ + + D+ YKN+L E + R GL +P+Y +++ G H
Sbjct: 62 EVALSALSSKGPSKSL------TARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLPFHG 253
+PTF VE+ G F G++ +TKK+AE AA A+ +L RK+ P G
Sbjct: 116 IPTFSCTVELAGMSFNGESAKTKKQAEKNAAIAAWFSL--RKMPSLDPLRG 164
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 87/154 (56%), Gaps = 6/154 (3%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y+ ++G DH PRFK+SV+ NG F S C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-----YKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
A++A +S P + YK++LQ A R LD P+Y+S+R GP H +F
Sbjct: 61 AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V + G +F E K KQAE AA A FSL
Sbjct: 121 CTVELAGMSFNG-ESAKTKKQAEKNAAIAAWFSL 153
>gi|326495676|dbj|BAJ85934.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 364
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/186 (41%), Positives = 96/186 (51%), Gaps = 9/186 (4%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R P Y REGP HA FKA VT +G TF L+QAEHAAA
Sbjct: 2 YKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFHGPTCCTTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL L+ + +L A V D+ YKN+L E + R GL +P Y T++ G H
Sbjct: 62 EVALARLSTRG--PSTYLTARV----LDETGVYKNLLQETAHRAGLKLPAYTTVRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLPFHGGRSCSIGSI 262
P F S VE+ G F G A RTKK+AE AA A++AL + P G C
Sbjct: 116 SPVFASSVELAGLSFAGDAARTKKQAEKNAAMTAWSALKQMPEARKEP---GNGCGGEEQ 172
Query: 263 THTVKA 268
H V A
Sbjct: 173 EHVVVA 178
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 86/156 (55%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + +SLP Y ++G DH PRFK++V+ NG +FH C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFHGPTCCTTLRQAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A ++ P + R YK++LQ A R L P Y+++R GP H+
Sbjct: 61 AEVALARLST--RGPSTYLTARVLDETGVYKNLLQETAHRAGLKLPAYTTVRSGPGHSPV 118
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F + V + G +F + + KQAE AA A +L
Sbjct: 119 FASSVELAGLSFAG-DAARTKKQAEKNAAMTAWSAL 153
>gi|356547178|ref|XP_003541993.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 393
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 92/158 (58%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ IREGP HA FKA V +G FE+ + L+QAEH+AA
Sbjct: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFETPHYCSTLRQAEHSAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+ AL SL+ ++ + + D+ YKN+L E++ R G P+P Y T + G H
Sbjct: 62 EAALNSLSHRGPSHSL------AAKILDETGVYKNLLQEIAQRVGAPLPHYTTYRSGLGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+P F +VE+ G F G+ + KK+AE AA A++AL
Sbjct: 116 LPVFTGIVELAGITFTGEPAKNKKQAEKNAAMAAWSAL 153
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y+ +++G DH PRFK++V+ NG F + C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFETPHYCSTLRQAEHSA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A+ A + P ++ + YK++LQ A+R P Y++ R G H
Sbjct: 61 AEAALNSLSH--RGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPHYTTYRSGLGHLPV 118
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + G TF E KN KQAE AA A +L
Sbjct: 119 FTGIVELAGITFTG-EPAKNKKQAEKNAAMAAWSAL 153
>gi|30693732|ref|NP_198923.2| dsRNA-binding protein 5 [Arabidopsis thaliana]
gi|75244423|sp|Q8GY79.1|DRB5_ARATH RecName: Full=Double-stranded RNA-binding protein 5; AltName:
Full=dsRNA-binding protein 5; Short=AtDRB5
gi|26450682|dbj|BAC42450.1| unknown protein [Arabidopsis thaliana]
gi|32189297|gb|AAP75803.1| At5g41070 [Arabidopsis thaliana]
gi|332007250|gb|AED94633.1| dsRNA-binding protein 5 [Arabidopsis thaliana]
Length = 393
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 95/158 (60%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ IREGP HA FKA V +G FES + L+QAEHAAA
Sbjct: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+V+L L+ +++ + + D+ YKN+L E + R GL +P+Y +++ G+ H
Sbjct: 62 EVSLNVLSSRVPSKSL------TAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P F VE+ G F G++ +TKK+AE AA A+++L
Sbjct: 116 FPGFSCTVELAGMTFTGESAKTKKQAEKNAAIAAWSSL 153
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 85/154 (55%), Gaps = 6/154 (3%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y+ +++G DH PRFK+SV+ NG F S C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-----YKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
A+++ +S P + YK++LQ A R LD P+Y+S+R G H F
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V + G TF E K KQAE AA A SL
Sbjct: 121 CTVELAGMTFTG-ESAKTKKQAEKNAAIAAWSSL 153
>gi|79420704|ref|NP_189329.3| dsRNA-binding protein 3 [Arabidopsis thaliana]
gi|145322916|ref|NP_001030779.2| dsRNA-binding protein 3 [Arabidopsis thaliana]
gi|75273549|sp|Q9LJF5.1|DRB3_ARATH RecName: Full=Double-stranded RNA-binding protein 3; AltName:
Full=dsRNA-binding protein 3; Short=AtDRB3
gi|11994159|dbj|BAB01188.1| unnamed protein product [Arabidopsis thaliana]
gi|45773934|gb|AAS76771.1| At3g26932 [Arabidopsis thaliana]
gi|62321583|dbj|BAD95129.1| putative protein [Arabidopsis thaliana]
gi|332643724|gb|AEE77245.1| dsRNA-binding protein 3 [Arabidopsis thaliana]
gi|332643725|gb|AEE77246.1| dsRNA-binding protein 3 [Arabidopsis thaliana]
Length = 359
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 99/171 (57%), Gaps = 8/171 (4%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R P Y+ REGP HA FKA V +G FES + L+QAEH+AA
Sbjct: 2 YKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL +L+ +++ + + D+ YKN+L E + R GL +P+Y +++ G H
Sbjct: 62 EVALSALSSKGPSKSL------TARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLPFHG 253
+PTF VE+ G F G++ +TKK+AE AA A+ +L RK+ P G
Sbjct: 116 IPTFSCTVELAGMSFNGESAKTKKQAEKNAAIAAWFSL--RKMPRLDPLRG 164
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 87/154 (56%), Gaps = 6/154 (3%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + +SLP Y+ ++G DH PRFK+SV+ NG F S C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-----YKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
A++A +S P + YK++LQ A R LD P+Y+S+R GP H +F
Sbjct: 61 AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V + G +F E K KQAE AA A FSL
Sbjct: 121 CTVELAGMSFNG-ESAKTKKQAEKNAAIAAWFSL 153
>gi|297805542|ref|XP_002870655.1| dsRNA-binding protein 5 [Arabidopsis lyrata subsp. lyrata]
gi|297316491|gb|EFH46914.1| dsRNA-binding protein 5 [Arabidopsis lyrata subsp. lyrata]
Length = 394
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 94/158 (59%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ IREGP HA FKA V +G FES + L+QAEHAAA
Sbjct: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+V+L L+ + ++ + D+ YKN+L E + R GL +P+Y +++ G+ H
Sbjct: 62 EVSLNVLS------SRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P F VE+ G F G++ +TKK+AE AA A+++L
Sbjct: 116 FPGFSCTVELAGMSFTGESAKTKKQAEKNAAIAAWSSL 153
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 85/154 (55%), Gaps = 6/154 (3%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y+ +++G DH PRFK+SV+ NG F S C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-----YKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
A+++ +S P + YK++LQ A R LD P+Y+S+R G H F
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V + G +F E K KQAE AA A SL
Sbjct: 121 CTVELAGMSFTG-ESAKTKKQAEKNAAIAAWSSL 153
>gi|226507212|ref|NP_001141877.1| hypothetical protein [Zea mays]
gi|194706274|gb|ACF87221.1| unknown [Zea mays]
gi|414589932|tpg|DAA40503.1| TPA: hypothetical protein ZEAMMB73_809711 [Zea mays]
Length = 392
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 89/160 (55%), Gaps = 6/160 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R P Y REGP HA F+A VT +G TFE L+QAEHAAA
Sbjct: 2 YKNQLQELAQRSCFSLPSYVCTREGPDHAPRFRAAVTFNGETFEGPSGCTTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL L+ + L A V D+ YKN+L E + R GL +P Y T++ G H
Sbjct: 62 EVALARLSLRG--PSTTLAARV----LDETGVYKNLLQETAHRAGLKLPAYTTVRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE 242
P F S VE+ G F G RTKK+AE AA A+++L +
Sbjct: 116 SPVFSSTVELAGLSFAGDPARTKKQAEKNAAMAAWSSLKQ 155
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + +SLP Y ++G DH PRF+++V+ NG +F C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFRAAVTFNGETFEGPSGCTTLRQAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A + P + R YK++LQ A R L P Y+++R GP H+
Sbjct: 61 AEVALARLSL--RGPSTTLAARVLDETGVYKNLLQETAHRAGLKLPAYTTVRSGPGHSPV 118
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F + V + G +F + + KQAE AA A SL
Sbjct: 119 FSSTVELAGLSFAG-DPARTKKQAEKNAAMAAWSSL 153
>gi|195641916|gb|ACG40426.1| double-stranded RNA binding motif family protein [Zea mays]
gi|195644492|gb|ACG41714.1| double-stranded RNA binding motif family protein [Zea mays]
Length = 352
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 89/160 (55%), Gaps = 6/160 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R P Y REGP HA F+A VT +G TFE L+QAEHAAA
Sbjct: 2 YKNQLQELAQRSCFSLPSYVCTREGPDHAPRFRAAVTFNGETFEGPSGCTTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL L+ + L A V D+ YKN+L E + R GL +P Y T++ G H
Sbjct: 62 EVALARLSLRG--PSTTLAARV----LDETGVYKNLLQETAHRAGLKLPAYTTVRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE 242
P F S VE+ G F G RTKK+AE AA A+++L +
Sbjct: 116 SPVFSSTVELAGLSFAGDPARTKKQAEKNAAMAAWSSLKQ 155
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + +SLP Y ++G DH PRF+++V+ NG +F C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFRAAVTFNGETFEGPSGCTTLRQAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A + P + R YK++LQ A R L P Y+++R GP H+
Sbjct: 61 AEVALARLSL--RGPSTTLAARVLDETGVYKNLLQETAHRAGLKLPAYTTVRSGPGHSPV 118
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F + V + G +F + + KQAE AA A SL
Sbjct: 119 FSSTVELAGLSFAG-DPARTKKQAEKNAAMAAWSSL 153
>gi|414589931|tpg|DAA40502.1| TPA: double-stranded RNA binding motif family protein [Zea mays]
Length = 354
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 89/160 (55%), Gaps = 6/160 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R P Y REGP HA F+A VT +G TFE L+QAEHAAA
Sbjct: 2 YKNQLQELAQRSCFSLPSYVCTREGPDHAPRFRAAVTFNGETFEGPSGCTTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL L+ + L A V D+ YKN+L E + R GL +P Y T++ G H
Sbjct: 62 EVALARLSLRG--PSTTLAARV----LDETGVYKNLLQETAHRAGLKLPAYTTVRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE 242
P F S VE+ G F G RTKK+AE AA A+++L +
Sbjct: 116 SPVFSSTVELAGLSFAGDPARTKKQAEKNAAMAAWSSLKQ 155
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + +SLP Y ++G DH PRF+++V+ NG +F C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFRAAVTFNGETFEGPSGCTTLRQAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A + P + R YK++LQ A R L P Y+++R GP H+
Sbjct: 61 AEVALARLSL--RGPSTTLAARVLDETGVYKNLLQETAHRAGLKLPAYTTVRSGPGHSPV 118
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F + V + G +F + + KQAE AA A SL
Sbjct: 119 FSSTVELAGLSFAG-DPARTKKQAEKNAAMAAWSSL 153
>gi|356514617|ref|XP_003526002.1| PREDICTED: double-stranded RNA-binding protein 2-like [Glycine max]
Length = 265
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 93/158 (58%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y SIREGP HA FKA + +G FE+ + L+QAEH+AA
Sbjct: 2 YKNQLQELAQRSCFNLPSYMSIREGPNHAPRFKATIKFNGEIFETPHYCSTLRQAEHSAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+V L SL+ ++ + + D+ YKN++ E++ R G P+P Y T + G H
Sbjct: 62 EVPLNSLSHRGPSHSL------ATKILDETGVYKNLVQEIAQRVGAPLPHYITYRSGLGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+P FI +VE+ G F G+ + KK+AE AA A++AL
Sbjct: 116 LPIFIRIVELTGITFTGEPAKNKKQAEKNAAMAAWSAL 153
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 6/154 (3%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y ++++G +H PRFK+++ NG F + C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYMSIREGPNHAPRFKATIKFNGEIFETPHYCSTLRQAEHSA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-----YKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
A++ + P + YK+++Q A+R P Y + R G H F
Sbjct: 61 AEVPLNSLSHRGPSHSLATKILDETGVYKNLVQEIAQRVGAPLPHYITYRSGLGHLPIFI 120
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V + G TF E KN KQAE AA A +L
Sbjct: 121 RIVELTGITFTG-EPAKNKKQAEKNAAMAAWSAL 153
>gi|322518582|sp|B7E321.1|DRB5_ORYSJ RecName: Full=Double-stranded RNA-binding protein 5; AltName:
Full=dsRNA-binding protein 2; Short=OsDRB2; AltName:
Full=dsRNA-binding protein 5
gi|215765071|dbj|BAG86768.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 404
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 97/182 (53%), Gaps = 16/182 (8%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R P Y REGP HA FKA VT +G TF+ L+QAEHAAA
Sbjct: 2 YKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL L+ ++ + + D+ YKN+L E + R GL +P+Y T++ G H
Sbjct: 62 EVALARLSLRGPSSSL------TARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERK-------LIFSLPF---H 252
P F S VE+ G F G +TKK AE AA A+++L + L+F L + H
Sbjct: 116 SPVFSSTVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQSNIRTTVSPLVFDLVWIVCH 175
Query: 253 GG 254
GG
Sbjct: 176 GG 177
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 6/163 (3%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + +SLP Y ++G DH PRFK++V+ NG +F +C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-----YKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
A++A + P + YK++LQ A R L P+Y+++R GP H+ F
Sbjct: 61 AEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 120
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAI 158
+ V + G +F + K K AE AA A SL + + +
Sbjct: 121 STVELAGMSFAG-DPAKTKKHAEKNAAMAAWSSLKQSNIRTTV 162
>gi|215764986|dbj|BAG86683.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 357
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 88/158 (55%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R P Y REGP HA FKA VT +G TF+ L+QAEHAAA
Sbjct: 2 YKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL L+ ++ + + D+ YKN+L E + R GL +P+Y T++ G H
Sbjct: 62 EVALARLSLRGPSSSL------TARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P F S VE+ G F G +TKK AE AA A+++L
Sbjct: 116 SPVFSSTVELAGMSFAGDPAKTKKHAEKNAAMAAWSSL 153
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 84/154 (54%), Gaps = 6/154 (3%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + +SLP Y ++G DH PRFK++V+ NG +F +C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-----YKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
A++A + P + YK++LQ A R L P+Y+++R GP H+ F
Sbjct: 61 AEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 120
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
+ V + G +F + K K AE AA A SL
Sbjct: 121 STVELAGMSFAG-DPAKTKKHAEKNAAMAAWSSL 153
>gi|222641889|gb|EEE70021.1| hypothetical protein OsJ_29958 [Oryza sativa Japonica Group]
Length = 325
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 89/160 (55%), Gaps = 6/160 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R P Y REGP HA FKA VT +G TF+ L+QAEHAAA
Sbjct: 2 YKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL L+ ++ + + D+ YKN+L E + R GL +P+Y T++ G H
Sbjct: 62 EVALARLSLRGPSSSL------TARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE 242
P F S VE+ G F G +TKK AE AA A+++L +
Sbjct: 116 SPVFSSTVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQ 155
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 86/156 (55%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + +SLP Y ++G DH PRFK++V+ NG +F +C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A + P ++ R YK++LQ A R L P+Y+++R GP H+
Sbjct: 61 AEVALARLSL--RGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPV 118
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F + V + G +F + K K AE AA A SL
Sbjct: 119 FSSTVELAGMSFAG-DPAKTKKHAEKNAAMAAWSSL 153
>gi|148907218|gb|ABR16750.1| unknown [Picea sitchensis]
Length = 388
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 93/158 (58%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + PLY IR+GP HA F+A V +G FES + L+QAE AA
Sbjct: 2 YKNQLQELAQRNCFNLPLYGCIRKGPDHAPRFRATVNFNGEIFESPNYCSTLRQAELVAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VA+ +L+ ++ V+ L D GV YKN+L E++ R GL +P+Y T + G H
Sbjct: 62 EVAVNTLSKRGPSGSL-----VAKDLDDTGV-YKNLLQEIAHRAGLSLPVYTTTRSGPAH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+P F +V+V G F GK TKK+AE A A++AL
Sbjct: 116 LPVFKCIVDVFGTRFNGKPAATKKQAEQNTAMAAWSAL 153
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 79/154 (51%), Gaps = 6/154 (3%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y ++ G DH PRF+++V+ NG F S C + ++++ A
Sbjct: 1 MYKNQLQELAQRNCFNLPLYGCIRKGPDHAPRFRATVNFNGEIFESPNYCSTLRQAELVA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQ-----CRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
A++A + P + YK++LQ A R L P+Y++ R GPAH FK
Sbjct: 61 AEVAVNTLSKRGPSGSLVAKDLDDTGVYKNLLQEIAHRAGLSLPVYTTTRSGPAHLPVFK 120
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V + G F + KQAE A A +L
Sbjct: 121 CIVDVFGTRFNG-KPAATKKQAEQNTAMAAWSAL 153
>gi|125564316|gb|EAZ09696.1| hypothetical protein OsI_31979 [Oryza sativa Indica Group]
Length = 357
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 87/158 (55%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R P Y REGP HA FKA VT +G TF+ L+QAEHAAA
Sbjct: 2 YKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL L+ + + + D+ YKN+L E + R GL +P+Y T++ G H
Sbjct: 62 EVALARLSLRGPSSSF------TARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P F S VE+ G F G +TKK AE AA A+++L
Sbjct: 116 SPVFSSTVELAGMSFAGDPAKTKKHAEKNAAMAAWSSL 153
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 84/154 (54%), Gaps = 6/154 (3%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + +SLP Y ++G DH PRFK++V+ NG +F +C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-----YKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
A++A + P + YK++LQ A R L P+Y+++R GP H+ F
Sbjct: 61 AEVALARLSLRGPSSSFTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 120
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
+ V + G +F + K K AE AA A SL
Sbjct: 121 STVELAGMSFAG-DPAKTKKHAEKNAAMAAWSSL 153
>gi|302805769|ref|XP_002984635.1| hypothetical protein SELMODRAFT_120579 [Selaginella moellendorffii]
gi|300147617|gb|EFJ14280.1| hypothetical protein SELMODRAFT_120579 [Selaginella moellendorffii]
Length = 190
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 99/164 (60%), Gaps = 6/164 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+ LQ A+R + P YS IREGP HA FKA V +G FES +F L+ AEHAAA
Sbjct: 2 FKNQLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEVFESPTYFSTLRHAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL +L+ +++ + + D+ YKN+L E + R G+P+P+Y T++ G H
Sbjct: 62 EVALNTLSRRGPPQSL------AARILDETGVYKNLLQETAQRAGVPLPIYTTVRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLI 246
+P F V V G +F G+A +TKK+AE AA A+++L + K
Sbjct: 116 LPVFTCTVGVGGMIFTGEAAKTKKQAEKNAAMTAWSSLKQCKFF 159
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 6/154 (3%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
M+K ++QEL + ++LP YS +++G DH PRFK++V+ NG F S + + +++ A
Sbjct: 1 MFKNQLQELAQRSCFNLPAYSCIREGPDHAPRFKATVNFNGEVFESPTYFSTLRHAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-----YKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
A++A + PP + YK++LQ A+R + P+Y+++R GP H F
Sbjct: 61 AEVALNTLSRRGPPQSLAARILDETGVYKNLLQETAQRAGVPLPIYTTVRSGPGHLPVFT 120
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V + G F E K KQAE AA A SL
Sbjct: 121 CTVGVGGMIFTG-EAAKTKKQAEKNAAMTAWSSL 153
>gi|302782383|ref|XP_002972965.1| hypothetical protein SELMODRAFT_441949 [Selaginella moellendorffii]
gi|302823467|ref|XP_002993386.1| hypothetical protein SELMODRAFT_431451 [Selaginella moellendorffii]
gi|300138817|gb|EFJ05571.1| hypothetical protein SELMODRAFT_431451 [Selaginella moellendorffii]
gi|300159566|gb|EFJ26186.1| hypothetical protein SELMODRAFT_441949 [Selaginella moellendorffii]
Length = 386
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 93/158 (58%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P YS IREGP HA FKA V +G FES + L+QAEHAAA
Sbjct: 2 YKNQLQELAQRSCFNLPAYSCIREGPDHAPRFKAAVNFNGEVFESPNYCSTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
++AL L+ +++ + L + GVF KN+L E + R +P+P Y T + G H
Sbjct: 62 ELALNVLSRRGPSQSL-----AARILDETGVF-KNLLQETAQRANVPLPTYTTTRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+P F +VEV G F G AG+TKK+AE AA A+ L
Sbjct: 116 LPVFTCVVEVAGMNFTGDAGKTKKQAEKNAAMAAWATL 153
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP YS +++G DH PRFK++V+ NG F S C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPAYSCIREGPDHAPRFKAAVNFNGEVFESPNYCSTLRQAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A+LA + P ++ R +K++LQ A+R N+ P Y++ R GP H
Sbjct: 61 AELALNVLSR--RGPSQSLAARILDETGVFKNLLQETAQRANVPLPTYTTTRSGPGHLPV 118
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + G F + K KQAE AA A +L
Sbjct: 119 FTCVVEVAGMNFTG-DAGKTKKQAEKNAAMAAWATL 153
>gi|242034167|ref|XP_002464478.1| hypothetical protein SORBIDRAFT_01g019110 [Sorghum bicolor]
gi|241918332|gb|EER91476.1| hypothetical protein SORBIDRAFT_01g019110 [Sorghum bicolor]
Length = 512
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 94/158 (59%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ +REGP HA FKA V +G FES FF L+QAEHAAA
Sbjct: 2 YKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL +LA Y+ + L + GV YKN+L E++ R G P+PLY T + G H
Sbjct: 62 EVALAALARRGPS-----YSLAARILDETGV-YKNLLQEVAQRVGAPLPLYTTERSGLGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+P F VE+ G F G + KK+AE AA A++AL
Sbjct: 116 LPVFTCTVELAGITFTGDPAKNKKQAEKNAASAAWSAL 153
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 80/159 (50%), Gaps = 16/159 (10%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSS---VSCKSSKESQ 57
MYK ++QEL + ++LP Y+ +++G DH PRFK++V+ NG F S + + ++ +
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60
Query: 58 NDAAKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAH 110
+ A A P ++ R YK++LQ A+R PLY++ R G H
Sbjct: 61 AEVALAALARRG-----PSYSLAARILDETGVYKNLLQEVAQRVGAPLPLYTTERSGLGH 115
Query: 111 ACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + G TF + KN KQAE AA A +L
Sbjct: 116 LPVFTCTVELAGITFTG-DPAKNKKQAEKNAASAAWSAL 153
>gi|308081633|ref|NP_001183890.1| uncharacterized protein LOC100502483 [Zea mays]
gi|238015288|gb|ACR38679.1| unknown [Zea mays]
Length = 520
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 94/158 (59%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ +REGP HA FKA V +G FES FF L+QAEHAAA
Sbjct: 2 YKNQLQELAQRSCFNLPSYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL +LA Y+ + L + GV YKN+L E++ R G P+PLY T + G H
Sbjct: 62 EVALAALARRGPS-----YSLAARILDETGV-YKNLLQEVAQRVGAPLPLYTTERSGLGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+P F VE+ G F G + KK+AE AA A++AL
Sbjct: 116 LPVFTCTVELAGITFAGDPAKNKKQAEKNAASAAWSAL 153
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 77/165 (46%), Gaps = 28/165 (16%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHS-------------- 46
MYK ++QEL + ++LP Y+ +++G DH PRFK++V+ NG F S
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60
Query: 47 SVSCKSSKESQNDAAKLA--FLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSI 104
+ ++ + + LA L T YK++LQ A+R PLY++
Sbjct: 61 AEVALAALARRGPSYSLAARILDETG-----------VYKNLLQEVAQRVGAPLPLYTTE 109
Query: 105 REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
R G H F V + G TF + KN KQAE AA A +L
Sbjct: 110 RSGLGHLPVFTCTVELAGITFAG-DPAKNKKQAEKNAASAAWSAL 153
>gi|226494720|ref|NP_001142144.1| hypothetical protein [Zea mays]
gi|194707342|gb|ACF87755.1| unknown [Zea mays]
gi|414871035|tpg|DAA49592.1| TPA: hypothetical protein ZEAMMB73_748999 [Zea mays]
Length = 515
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 94/158 (59%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ +REGP HA FKA V +G FES FF L+QAEHAAA
Sbjct: 2 YKNQLQELAQRSCFNLPSYTCLREGPDHAPRFKAAVNFNGEQFESPGFFSTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL +LA Y+ + L + GV YKN+L E++ R G P+PLY T + G H
Sbjct: 62 EVALAALARRGPS-----YSLAARILDETGV-YKNLLQEVAQRVGAPLPLYTTERSGVGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+P F VE+ G F G + KK+AE AA A++AL
Sbjct: 116 LPVFTCTVELAGITFTGDHAKNKKQAEKNAASAAWSAL 153
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y+ +++G DH PRFK++V+ NG F S + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCLREGPDHAPRFKAAVNFNGEQFESPGFFSTLRQAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A P ++ R YK++LQ A+R PLY++ R G H
Sbjct: 61 AEVALAALAR--RGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPLYTTERSGVGHLPV 118
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + G TF + KN KQAE AA A +L
Sbjct: 119 FTCTVELAGITFTG-DHAKNKKQAEKNAASAAWSAL 153
>gi|40788412|dbj|BAD07039.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 397
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 80/147 (54%), Gaps = 6/147 (4%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R P REGP HA FKA VT +G TF+ L+QAEHAAA
Sbjct: 25 YKNQLQELAQRSCFSLPSNVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAAA 84
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL L+ ++ + + D+ YKN+L E + R GL +P+Y T++ G H
Sbjct: 85 EVALARLSLRGPSSSL------TARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGH 138
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAE 229
P F S VE+ G F G +TKK AE
Sbjct: 139 SPVFSSTVELAGMSFAGDPAKTKKHAE 165
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 73/130 (56%), Gaps = 5/130 (3%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + +SLP ++G DH PRFK++V+ NG +F +C + +++++ A
Sbjct: 24 MYKNQLQELAQRSCFSLPSNVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 83
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-----YKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
A++A + P + YK++LQ A R L P+Y+++R GP H+ F
Sbjct: 84 AEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 143
Query: 116 ARVTIDGHTF 125
+ V + G +F
Sbjct: 144 STVELAGMSF 153
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAG-RTKKKAEM 230
G YKN L EL+ R +P + G H P F + V +GE F G + T ++AE
Sbjct: 22 GSMYKNQLQELAQRSCFSLPSNVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEH 81
Query: 231 KAAKVAYTAL 240
AA+VA L
Sbjct: 82 AAAEVALARL 91
>gi|294464151|gb|ADE77592.1| unknown [Picea sitchensis]
Length = 505
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 87/158 (55%), Gaps = 13/158 (8%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+ LQ+ A R P YSS R+GP H FKA VT TFES +F+ L+QAEHAAA
Sbjct: 267 HKNQLQDLALRGGFSLPSYSSTRKGPPHVPLFKAFVTFKEETFESPDFYGTLRQAEHAAA 326
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
VAL SL + F D+ YKN L E + +EG+P P Y T + G H
Sbjct: 327 AVALKSLTKEGFS-------------IDESAMYKNFLQEFAQKEGIPFPEYVTDRSGPSH 373
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+P F S V+ G F GK +KK+AE AA A++A+
Sbjct: 374 IPIFKSTVKFAGTTFAGKEANSKKQAEKNAAMAAWSAV 411
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 45/65 (69%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
M+K ++QE+ + SLP Y + ++G DH PRFK++V+ NG +F S CK++KE+QN A
Sbjct: 1 MFKNRLQEVAQKHCVSLPEYKSTREGPDHAPRFKATVTYNGRAFESPAFCKTAKEAQNAA 60
Query: 61 AKLAF 65
A+ A
Sbjct: 61 AEFAL 65
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 41/64 (64%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+ LQ A++ + P Y S REGP HA FKA VT +G FES F K K+A++AAA
Sbjct: 2 FKNRLQEVAQKHCVSLPEYKSTREGPDHAPRFKATVTYNGRAFESPAFCKTAKEAQNAAA 61
Query: 143 KVAL 146
+ AL
Sbjct: 62 EFAL 65
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 13/157 (8%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHS-----SVSCKSSKE 55
M+K ++Q+L + +SLP YS+ + G H P FK+ V+ +F S ++
Sbjct: 266 MHKNQLQDLALRGGFSLPSYSSTRKGPPHVPLFKAFVTFKEETFESPDFYGTLRQAEHAA 325
Query: 56 SQNDAAKLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
+ L F+ + YK+ LQ +A+++ + P Y + R GP+H FK
Sbjct: 326 AAVALKSLTKEGFSI-------DESAMYKNFLQEFAQKEGIPFPEYVTDRSGPSHIPIFK 378
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACD 152
+ V G TF E + KQAE AA A ++ D
Sbjct: 379 STVKFAGTTFAGKE-ANSKKQAEKNAAMAAWSAVKND 414
>gi|255545990|ref|XP_002514055.1| conserved hypothetical protein [Ricinus communis]
gi|223547141|gb|EEF48638.1| conserved hypothetical protein [Ricinus communis]
Length = 361
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 105/186 (56%), Gaps = 16/186 (8%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++K L +P+Y +I+EGP+H SF++ V ++ ++SL F N K AE +AA
Sbjct: 17 FKSRLQEYAQKKGLPTPVYETIKEGPSHEPSFRSTVIVNDIRYDSLPGFFNRKAAEQSAA 76
Query: 143 KVALFSLA-CDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAP 201
+VAL LA CD+ ++I H + KN+L E + + +PLY K +P
Sbjct: 77 EVALMELAKCDEVNDSISQPVHETG-------LCKNLLQEYAQKMNYAIPLYLCQKNESP 129
Query: 202 HMPT-FISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLPFHGGRSCSIG 260
T F VE+ G + G + +TKK+AE+KAA+ TAL+ +L S H SIG
Sbjct: 130 GRGTLFKCTVEIGGIHYIGASAKTKKEAEIKAAR---TALLAIQLSASESSHN----SIG 182
Query: 261 SITHTV 266
+ TV
Sbjct: 183 NCQLTV 188
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 11/157 (7%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE +K P Y T+K+G H+P F+S+V VN + + S + K ++ A
Sbjct: 16 VFKSRLQEYAQKKGLPTPVYETIKEGPSHEPSFRSTVIVNDIRYDSLPGFFNRKAAEQSA 75
Query: 61 AKLAFLHFT-------SPPPPPPPNVQCRYKSVLQNYARRKNLDSPLY-SSIREGPAHAC 112
A++A + S P C K++LQ YA++ N PLY E P
Sbjct: 76 AEVALMELAKCDEVNDSISQPVHETGLC--KNLLQEYAQKMNYAIPLYLCQKNESPGRGT 133
Query: 113 SFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
FK V I G + K K+AE AA+ AL ++
Sbjct: 134 LFKCTVEIGGIHYIGAS-AKTKKEAEIKAARTALLAI 169
>gi|357146672|ref|XP_003574072.1| PREDICTED: double-stranded RNA-binding protein 6-like [Brachypodium
distachyon]
Length = 502
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 94/158 (59%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ +REGP HA FKA VT +G FES FF L+QAEHAAA
Sbjct: 2 YKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKASVTFNGELFESPGFFTTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL +LA Y+ + L + GV YKN+L E++ R G P+P Y T + G H
Sbjct: 62 EVALAALARRGPS-----YSLAARILDETGV-YKNLLQEVAQRVGAPLPSYTTERSGLGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+P F VE+ G +F G + KK+AE AA A+ +L
Sbjct: 116 LPVFTCTVELAGIIFTGDHAKNKKQAEKNAASAAWASL 153
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 78/159 (49%), Gaps = 16/159 (10%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSS---VSCKSSKESQ 57
MYK ++QEL + ++LP Y+ +++G DH PRFK+SV+ NG F S + + ++ +
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKASVTFNGELFESPGFFTTLRQAEHAA 60
Query: 58 NDAAKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAH 110
+ A A P ++ R YK++LQ A+R P Y++ R G H
Sbjct: 61 AEVALAALARRG-----PSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGH 115
Query: 111 ACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + G F + KN KQAE AA A SL
Sbjct: 116 LPVFTCTVELAGIIFTG-DHAKNKKQAEKNAASAAWASL 153
>gi|115482562|ref|NP_001064874.1| Os10g0480500 [Oryza sativa Japonica Group]
gi|75261835|sp|Q9AV50.1|DRB6_ORYSJ RecName: Full=Double-stranded RNA-binding protein 6; AltName:
Full=dsRNA-binding protein 5; Short=OsDRB5; AltName:
Full=dsRNA-binding protein 6
gi|13384384|gb|AAK21352.1|AC024594_16 putative extensin [Oryza sativa Japonica Group]
gi|31432702|gb|AAP54300.1| Double-stranded RNA binding motif family protein, expressed [Oryza
sativa Japonica Group]
gi|113639483|dbj|BAF26788.1| Os10g0480500 [Oryza sativa Japonica Group]
gi|125575161|gb|EAZ16445.1| hypothetical protein OsJ_31914 [Oryza sativa Japonica Group]
gi|215694820|dbj|BAG90011.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 514
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 97/164 (59%), Gaps = 8/164 (4%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ +REGP HA FKA V +G FES FF L+QAEHAAA
Sbjct: 2 YKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL +LA Y+ + L + GV YKN+L E++ R G P+P Y T + G H
Sbjct: 62 EVALAALARRGPS-----YSLAARILDETGV-YKNLLQEVAQRVGAPLPSYTTERSGLGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLI 246
+P F VE+ G F G + KK+AE AA A+++L R+L+
Sbjct: 116 LPVFTCTVELAGITFTGDPAKNKKQAEKNAASAAWSSL--RQLV 157
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 79/173 (45%), Gaps = 28/173 (16%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHS-------------- 46
MYK ++QEL + ++LP Y+ +++G DH PRFK++V+ NG F S
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60
Query: 47 SVSCKSSKESQNDAAKLA--FLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSI 104
+ ++ + + LA L T YK++LQ A+R P Y++
Sbjct: 61 AEVALAALARRGPSYSLAARILDETG-----------VYKNLLQEVAQRVGAPLPSYTTE 109
Query: 105 REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEA 157
R G H F V + G TF + KN KQAE AA A SL QEA
Sbjct: 110 RSGLGHLPVFTCTVELAGITFTG-DPAKNKKQAEKNAASAAWSSLRQLVRQEA 161
>gi|449489595|ref|XP_004158359.1| PREDICTED: putative syntaxin-131-like [Cucumis sativus]
Length = 307
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/81 (56%), Positives = 59/81 (72%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
M+KTK+QELCH+K + LP YS +K G DHDPRF+++V+V+G F S KSSK++QNDA
Sbjct: 1 MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQC 81
AKLAF F+ P P PP C
Sbjct: 61 AKLAFDFFSLPSLPQPPEQLC 81
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+ LQ RK+ P YS +++G H F+A VT+DG F S K+ KQA++ AA
Sbjct: 2 FKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDAA 61
Query: 143 KVA--LFSL 149
K+A FSL
Sbjct: 62 KLAFDFFSL 70
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 174 FYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKA-GRTKKKAEMKA 232
+K L EL R+ +P Y +K G H P F + V VDG+ F ++ K+A+ A
Sbjct: 1 MFKTKLQELCHRKSYKLPEYSVVKQGQDHDPRFEATVTVDGKQFCSPTPSKSSKQAQNDA 60
Query: 233 AKVAYTALIERKLIFSLP 250
AK+A+ FSLP
Sbjct: 61 AKLAFD-------FFSLP 71
>gi|224129272|ref|XP_002328933.1| predicted protein [Populus trichocarpa]
gi|222839363|gb|EEE77700.1| predicted protein [Populus trichocarpa]
Length = 133
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 77/135 (57%), Gaps = 4/135 (2%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+ LQ A+R + P Y+ IREGP HA FKA V +G FES + L+QAEHAAA
Sbjct: 2 FKNQLQELAQRSCFNLPAYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL L+ A L A V M D+ YKN+L E + R GL +P Y T++ G H
Sbjct: 62 EVALNVLSSRG--PARSLTARVLM--KDETGIYKNLLQETAHRAGLNLPAYTTVRSGPGH 117
Query: 203 MPTFISMVEVDGEVF 217
+P F VE+ G F
Sbjct: 118 VPVFTCTVELAGMNF 132
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 73/132 (55%), Gaps = 7/132 (5%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
M+K ++QEL + ++LP Y+ +++G DH PRFK+SV+ NG F S C + +++++ A
Sbjct: 1 MFKNQLQELAQRSCFNLPAYACIREGPDHAPRFKASVNFNGEIFESPSYCTTLRQAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A +S P + YK++LQ A R L+ P Y+++R GP H
Sbjct: 61 AEVALNVLSSRGPARSLTARVLMKDETGIYKNLLQETAHRAGLNLPAYTTVRSGPGHVPV 120
Query: 114 FKARVTIDGHTF 125
F V + G F
Sbjct: 121 FTCTVELAGMNF 132
>gi|326511242|dbj|BAJ87635.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 93/158 (58%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ +REGP HA FKA V +G FES FF L+QAEHAAA
Sbjct: 2 YKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVIFNGEQFESPGFFTTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL +LA Y+ + L + GV YKN+L E++ R G P+P Y T + G H
Sbjct: 62 EVALAALARRGPS-----YSLAARILDETGV-YKNLLQEVAQRVGAPLPSYTTERSGLGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+P F VE+ G F G + KK+AE AA A+++L
Sbjct: 116 LPVFTCTVELAGITFTGDHAKNKKQAEKNAASAAWSSL 153
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 78/159 (49%), Gaps = 16/159 (10%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSS---VSCKSSKESQ 57
MYK ++QEL + ++LP Y+ +++G DH PRFK++V NG F S + + ++ +
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVIFNGEQFESPGFFTTLRQAEHAA 60
Query: 58 NDAAKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAH 110
+ A A P ++ R YK++LQ A+R P Y++ R G H
Sbjct: 61 AEVALAALARRG-----PSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGH 115
Query: 111 ACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + G TF + KN KQAE AA A SL
Sbjct: 116 LPVFTCTVELAGITFTG-DHAKNKKQAEKNAASAAWSSL 153
>gi|449511425|ref|XP_004163953.1| PREDICTED: double-stranded RNA-binding protein 1-like [Cucumis
sativus]
Length = 351
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 92/159 (57%), Gaps = 7/159 (4%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P+Y +I+EGP+H +F + V ++ ++SL F N K AE +AA
Sbjct: 16 FKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAA 75
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL L+ ++ L HVS + + G KN+L E + + +PLY+ K P
Sbjct: 76 EVALMELS-----KSSDLNPHVSQPVHETG-LCKNLLQEYAQKMNFAIPLYQCQKDDGPG 129
Query: 203 MPTFIS-MVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+ S VE+ G + G +TKK+AE+KAA+ A A+
Sbjct: 130 RGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAI 168
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 7/155 (4%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + P Y T+K+G H+P F S+V VN + + S + K ++ A
Sbjct: 15 VFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSA 74
Query: 61 AKLAFLHFT-----SPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIR-EGPAHACSF 114
A++A + + +P P + K++LQ YA++ N PLY + +GP F
Sbjct: 75 AEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLYQCQKDDGPGRGSLF 134
Query: 115 KARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V I G + K K+AE AA+ AL ++
Sbjct: 135 SCTVEIGGIRYIG-AVAKTKKEAEIKAARTALLAI 168
>gi|449470070|ref|XP_004152741.1| PREDICTED: double-stranded RNA-binding protein 1-like [Cucumis
sativus]
Length = 344
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 92/159 (57%), Gaps = 7/159 (4%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P+Y +I+EGP+H +F + V ++ ++SL F N K AE +AA
Sbjct: 9 FKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSAA 68
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL L+ ++ L HVS + + G KN+L E + + +PLY+ K P
Sbjct: 69 EVALMELS-----KSSDLNPHVSQPVHETG-LCKNLLQEYAQKMNFAIPLYQCQKDDGPG 122
Query: 203 MPTFIS-MVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+ S VE+ G + G +TKK+AE+KAA+ A A+
Sbjct: 123 RGSLFSCTVEIGGIRYIGAVAKTKKEAEIKAARTALLAI 161
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 7/155 (4%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + P Y T+K+G H+P F S+V VN + + S + K ++ A
Sbjct: 8 VFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFHSTVIVNDVRYDSLPGFSNRKAAEQSA 67
Query: 61 AKLAFLHFT-----SPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIR-EGPAHACSF 114
A++A + + +P P + K++LQ YA++ N PLY + +GP F
Sbjct: 68 AEVALMELSKSSDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLYQCQKDDGPGRGSLF 127
Query: 115 KARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V I G + K K+AE AA+ AL ++
Sbjct: 128 SCTVEIGGIRYIG-AVAKTKKEAEIKAARTALLAI 161
>gi|225459069|ref|XP_002285663.1| PREDICTED: double-stranded RNA-binding protein 1 [Vitis vinifera]
gi|147781065|emb|CAN68128.1| hypothetical protein VITISV_043706 [Vitis vinifera]
Length = 400
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 90/160 (56%), Gaps = 9/160 (5%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +PLY +I+EGP H SFK+ V ++ ++SL F N K AE +AA
Sbjct: 16 FKSRLQEYAQKVGLPTPLYDTIKEGPPHVPSFKSTVIVNDVRYDSLPGFSNRKAAEQSAA 75
Query: 143 KVALFSLA-CDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAP 201
+VAL LA + +E I H + KN+L E + + +P+Y K +P
Sbjct: 76 EVALVELAKSGNMKECISQPVHETG-------LCKNLLQEYAQKMNYAIPMYVCQKDESP 128
Query: 202 -HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+F VE+ G + G A RTKK+AE+KAA+ A A+
Sbjct: 129 GRAASFSCTVEIGGIRYIGAAARTKKEAEIKAARTALLAI 168
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 7/155 (4%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + P Y T+K+G H P FKS+V VN + + S + K ++ A
Sbjct: 15 VFKSRLQEYAQKVGLPTPLYDTIKEGPPHVPSFKSTVIVNDVRYDSLPGFSNRKAAEQSA 74
Query: 61 AKLAFLHFTSPPP-----PPPPNVQCRYKSVLQNYARRKNLDSPLYSSIR-EGPAHACSF 114
A++A + P + K++LQ YA++ N P+Y + E P A SF
Sbjct: 75 AEVALVELAKSGNMKECISQPVHETGLCKNLLQEYAQKMNYAIPMYVCQKDESPGRAASF 134
Query: 115 KARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V I G + + K+AE AA+ AL ++
Sbjct: 135 SCTVEIGGIRYIGA-AARTKKEAEIKAARTALLAI 168
>gi|302142076|emb|CBI19279.3| unnamed protein product [Vitis vinifera]
Length = 415
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 90/160 (56%), Gaps = 9/160 (5%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +PLY +I+EGP H SFK+ V ++ ++SL F N K AE +AA
Sbjct: 16 FKSRLQEYAQKVGLPTPLYDTIKEGPPHVPSFKSTVIVNDVRYDSLPGFSNRKAAEQSAA 75
Query: 143 KVALFSLA-CDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAP 201
+VAL LA + +E I H + KN+L E + + +P+Y K +P
Sbjct: 76 EVALVELAKSGNMKECISQPVHETG-------LCKNLLQEYAQKMNYAIPMYVCQKDESP 128
Query: 202 -HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+F VE+ G + G A RTKK+AE+KAA+ A A+
Sbjct: 129 GRAASFSCTVEIGGIRYIGAAARTKKEAEIKAARTALLAI 168
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 7/155 (4%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + P Y T+K+G H P FKS+V VN + + S + K ++ A
Sbjct: 15 VFKSRLQEYAQKVGLPTPLYDTIKEGPPHVPSFKSTVIVNDVRYDSLPGFSNRKAAEQSA 74
Query: 61 AKLAFLHFTSPPP-----PPPPNVQCRYKSVLQNYARRKNLDSPLYSSIR-EGPAHACSF 114
A++A + P + K++LQ YA++ N P+Y + E P A SF
Sbjct: 75 AEVALVELAKSGNMKECISQPVHETGLCKNLLQEYAQKMNYAIPMYVCQKDESPGRAASF 134
Query: 115 KARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V I G + + K+AE AA+ AL ++
Sbjct: 135 SCTVEIGGIRYIGA-AARTKKEAEIKAARTALLAI 168
>gi|357155520|ref|XP_003577147.1| PREDICTED: double-stranded RNA-binding protein 8-like [Brachypodium
distachyon]
Length = 447
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 93/158 (58%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P Y +++EGP+H FK+ V +DG +++SL F + K AE +AA
Sbjct: 14 FKSRLQEYAQKAGLPTPEYQTLKEGPSHEPVFKSAVLVDGVSYDSLPGFFSRKAAEQSAA 73
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL +A +++ L ++ + KN+L E + + +P Y + + +
Sbjct: 74 EVALMEIA-----KSLALPTSATIPAVQETGLCKNLLQEYAQKMNYAIPSYISHRQASGV 128
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P FIS VE+ G + G A RTKK+AE+KAA+ A A+
Sbjct: 129 AP-FISTVEIGGIQYIGAAARTKKEAEIKAARTALLAI 165
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 12/157 (7%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + P Y T+K+G H+P FKS+V V+G+S+ S S K ++ A
Sbjct: 13 VFKSRLQEYAQKAGLPTPEYQTLKEGPSHEPVFKSAVLVDGVSYDSLPGFFSRKAAEQSA 72
Query: 61 AKLAFLHFTS----PPPPPPPNVQ----CRYKSVLQNYARRKNLDSPLYSSIREGPAHAC 112
A++A + P P VQ C K++LQ YA++ N P Y S R+ +
Sbjct: 73 AEVALMEIAKSLALPTSATIPAVQETGLC--KNLLQEYAQKMNYAIPSYISHRQA-SGVA 129
Query: 113 SFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F + V I G + + K+AE AA+ AL ++
Sbjct: 130 PFISTVEIGGIQYIGA-AARTKKEAEIKAARTALLAI 165
>gi|242092788|ref|XP_002436884.1| hypothetical protein SORBIDRAFT_10g010510 [Sorghum bicolor]
gi|241915107|gb|EER88251.1| hypothetical protein SORBIDRAFT_10g010510 [Sorghum bicolor]
Length = 243
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 127/245 (51%), Gaps = 16/245 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK+++ LC +K P + +G H P F ++V++N F + S KE N A
Sbjct: 1 MYKSELHALCSKKHCPKPEFVHTCEGPVHSPVFTATVTLNEKKFCAGEGTPSKKEVDNLA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTI 120
A+ A L P + +K+ L YA++ PLY I+EGPAHA F A VTI
Sbjct: 61 ARAALLSLADSSKPF--ESKTDFKTQLSVYAQKLGKVPPLYKLIQEGPAHAPRFNAEVTI 118
Query: 121 DGHTFESLEF-FKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVL 179
DG TF E + LK AE AAA+VAL L QE+ + YKN +
Sbjct: 119 DGQTFGRPELLYYKLKDAEAAAAEVALDLLPPIPPQESTI-----------PSLSYKNFI 167
Query: 180 HELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAY-- 237
E++ +EG+ +P+Y T+ + + S V++ E+F G+ +KK+AEM AAK+AY
Sbjct: 168 QEIAQKEGILLPVYNTVPTNKEYSTAYKSSVQIKCEIFEGEPRTSKKQAEMNAAKIAYHH 227
Query: 238 TALIE 242
AL+E
Sbjct: 228 LALLE 232
>gi|302790644|ref|XP_002977089.1| hypothetical protein SELMODRAFT_106185 [Selaginella moellendorffii]
gi|300155065|gb|EFJ21698.1| hypothetical protein SELMODRAFT_106185 [Selaginella moellendorffii]
Length = 299
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 87/160 (54%), Gaps = 6/160 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YKS LQ +A++ P Y SI++G H F+A V ++G +ES + F NLK AEH+AA
Sbjct: 2 YKSQLQEFAQKSGWTVPQYDSIKQGLPHLPRFQASVEVNGVKYESEDGFPNLKAAEHSAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
K AL SL A + SM KNVL E + R G +P+Y+ G H
Sbjct: 62 KKALDSLT-GGANGASTDASGSSMT-----GLCKNVLQEYAQRNGFSLPIYQIEITGPSH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE 242
F + VE+ G ++ G ++KK+AE+KAA+ A A+ E
Sbjct: 116 NSVFAATVEIGGVLYKGGTAKSKKEAEVKAARTAILAIKE 155
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 6/154 (3%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK+++QE + W++P+Y ++K G H PRF++SV VNG+ + S + K +++ A
Sbjct: 1 MYKSQLQEFAQKSGWTVPQYDSIKQGLPHLPRFQASVEVNGVKYESEDGFPNLKAAEHSA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCRY-----KSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
AK A T + K+VLQ YA+R P+Y GP+H F
Sbjct: 61 AKKALDSLTGGANGASTDASGSSMTGLCKNVLQEYAQRNGFSLPIYQIEITGPSHNSVFA 120
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
A V I G ++ K+ K+AE AA+ A+ ++
Sbjct: 121 ATVEIGGVLYKG-GTAKSKKEAEVKAARTAILAI 153
>gi|255583419|ref|XP_002532469.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223527827|gb|EEF29925.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 289
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 97/184 (52%), Gaps = 15/184 (8%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ Y +R++L P+Y ++ EG H F++ V +DG + S F + K+AE A
Sbjct: 14 YKNRLQEYTQRQSLQLPIYQTVNEGYPHDPKFRSTVLVDGEEYTSHNTFSHRKEAEQDVA 73
Query: 143 KVALFSLA---CDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCG 199
K+AL S+ D+ ++ F + +D V K++L+E +++ L +P Y T+K G
Sbjct: 74 KLALTSITEKIKDEIKDEKFTH--------EDTVACKSILNEYAVKMQLEMPTYNTVKQG 125
Query: 200 APHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL---IERKLIFSLPFHGGRS 256
P F+S +G + G GRTKK+AE AA+ A +L +E I S F R
Sbjct: 126 GL-FPIFVSSSVFNGVTYNGDIGRTKKEAEQLAARAAVLSLLRNVESGEIISKFFKSKRK 184
Query: 257 CSIG 260
+G
Sbjct: 185 LYVG 188
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 12/157 (7%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QE ++ LP Y T+ +G HDP+F+S+V V+G + S + KE++ D
Sbjct: 13 MYKNRLQEYTQRQSLQLPIYQTVNEGYPHDPKFRSTVLVDGEEYTSHNTFSHRKEAEQDV 72
Query: 61 AKLAFLHFTSPPPPPPPN--------VQCRYKSVLQNYARRKNLDSPLYSSIREGPAHAC 112
AKLA T + V C KS+L YA + L+ P Y+++++G
Sbjct: 73 AKLALTSITEKIKDEIKDEKFTHEDTVAC--KSILNEYAVKMQLEMPTYNTVKQGGLFPI 130
Query: 113 SFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F + +G T+ + + K+AE AA+ A+ SL
Sbjct: 131 -FVSSSVFNGVTYNG-DIGRTKKEAEQLAARAAVLSL 165
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 173 VFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRT-KKKAEMK 231
+ YKN L E + R+ L +P+Y+T+ G PH P F S V VDGE + + +K+AE
Sbjct: 12 LMYKNRLQEYTQRQSLQLPIYQTVNEGYPHDPKFRSTVLVDGEEYTSHNTFSHRKEAEQD 71
Query: 232 AAKVAYTALIER 243
AK+A T++ E+
Sbjct: 72 VAKLALTSITEK 83
>gi|9967526|emb|CAC05659.1| RBP2 protein [Brassica oleracea var. capitata]
Length = 283
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 91/159 (57%), Gaps = 7/159 (4%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P+Y +++EGP+H F++ V +DG ++SL F N K AE +AA
Sbjct: 16 FKSRLQEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDSLPGFFNRKAAEQSAA 75
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGA-P 201
+VAL + ++ L VS+ + + G+ KN+L E + + +PLY+ K
Sbjct: 76 EVAL-----QELSKSTELGQCVSLPVHEMGLC-KNLLQEYAQKMNYAIPLYQCQKSETLG 129
Query: 202 HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P F VE+ G + G A +TKK+AE+ A + A A+
Sbjct: 130 RAPQFTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAI 168
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 7/155 (4%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + + P Y T+K+G H F+S+V V+G+ + S + K ++ A
Sbjct: 15 VFKSRLQEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDSLPGFFNRKAAEQSA 74
Query: 61 AKLAFLHFTSPPP-----PPPPNVQCRYKSVLQNYARRKNLDSPLYSSIR-EGPAHACSF 114
A++A + P + K++LQ YA++ N PLY + E A F
Sbjct: 75 AEVALQELSKSTELGQCVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQKSETLGRAPQF 134
Query: 115 KARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V I G + K K+AE +A + AL ++
Sbjct: 135 TCTVEIGGIKYTGAA-TKTKKEAEISAGRTALIAI 168
>gi|224069354|ref|XP_002302963.1| predicted protein [Populus trichocarpa]
gi|222844689|gb|EEE82236.1| predicted protein [Populus trichocarpa]
Length = 452
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 85/159 (53%), Gaps = 8/159 (5%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ Y ++ +L P+Y ++ EGPAH F++ V +DG + S + F + K AE A
Sbjct: 140 YKNRLQEYTQKSSLQLPVYQTLNEGPAHMPRFRSTVWVDGARYRSQKTFLHRKAAEQDVA 199
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+AL S+ E L L D VF K++L+E +++ P Y T++
Sbjct: 200 NLALESILKRVKDEGCPL-------LLGDTVFCKSILNEFAVKVNREKPTYNTVQSPG-L 251
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALI 241
+P FIS + DG + G AGR KK+AE AA+ +LI
Sbjct: 252 LPVFISTLVFDGVSYTGDAGRNKKEAEQLAARAVILSLI 290
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 20/160 (12%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QE + LP Y T+ +G H PRF+S+V V+G + S + K ++ D
Sbjct: 139 MYKNRLQEYTQKSSLQLPVYQTLNEGPAHMPRFRSTVWVDGARYRSQKTFLHRKAAEQDV 198
Query: 61 AKLAFLHFTSPPPPPPPNVQ---CRY--------KSVLQNYARRKNLDSPLYSSIREGPA 109
A LA V+ C KS+L +A + N + P Y+++ + P
Sbjct: 199 ANLALESILK-------RVKDEGCPLLLGDTVFCKSILNEFAVKVNREKPTYNTV-QSPG 250
Query: 110 HACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F + + DG ++ + +N K+AE AA+ + SL
Sbjct: 251 LLPVFISTLVFDGVSYTG-DAGRNKKEAEQLAARAVILSL 289
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 171 DGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYG-KAGRTKKKAE 229
D + YKN L E + + L +P+Y+T+ G HMP F S V VDG + K +K AE
Sbjct: 136 DNLMYKNRLQEYTQKSSLQLPVYQTLNEGPAHMPRFRSTVWVDGARYRSQKTFLHRKAAE 195
Query: 230 MKAAKVAYTALIER 243
A +A ++++R
Sbjct: 196 QDVANLALESILKR 209
>gi|50511733|gb|AAT77419.1| dsRNA-binding protein LH2-o [Brassica napus]
Length = 277
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 91/159 (57%), Gaps = 7/159 (4%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P+Y +++EGP+H F++ V +DG ++SL F N K AE +AA
Sbjct: 16 FKSRLQEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDSLPGFFNRKAAEQSAA 75
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGA-P 201
+VAL + ++ L VS+ + + G+ KN+L E + + +PLY+ K
Sbjct: 76 EVAL-----QELSKSTELGQCVSLPVHEMGLC-KNLLQEYAQKMNYAIPLYQCQKSETLG 129
Query: 202 HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P F VE+ G + G A +TK++AE+ A + A A+
Sbjct: 130 RAPQFTCTVEIGGIKYTGAATKTKREAEISAGRTALIAI 168
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 7/155 (4%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + + P Y T+K+G H F+S+V V+G+ + S + K ++ A
Sbjct: 15 VFKSRLQEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDSLPGFFNRKAAEQSA 74
Query: 61 AKLAFLHFTSPPP-----PPPPNVQCRYKSVLQNYARRKNLDSPLYSSIR-EGPAHACSF 114
A++A + P + K++LQ YA++ N PLY + E A F
Sbjct: 75 AEVALQELSKSTELGQCVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQKSETLGRAPQF 134
Query: 115 KARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V I G + K ++AE +A + AL ++
Sbjct: 135 TCTVEIGGIKYTGAA-TKTKREAEISAGRTALIAI 168
>gi|50511729|gb|AAT77417.1| dsRNA-binding protein LH2 [Brassica oleracea var. capitata]
Length = 278
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 91/159 (57%), Gaps = 7/159 (4%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P+Y +++EGP+H F++ V +DG ++SL F N K AE +AA
Sbjct: 16 FKSRLQEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDSLPGFFNRKAAEQSAA 75
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGA-P 201
+VAL + ++ L VS+ + + G+ KN+L E + + +PLY+ K
Sbjct: 76 EVAL-----QELSKSTELGQCVSLPVHEMGLC-KNLLQEYAQKMNYAIPLYQCQKSETLG 129
Query: 202 HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P F VE+ G + G A +TK++AE+ A + A A+
Sbjct: 130 RAPQFTCTVEIGGIKYTGAATKTKREAEISAGRTALIAI 168
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 7/155 (4%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + + P Y T+K+G H F+S+V V+G+ + S + K ++ A
Sbjct: 15 VFKSRLQEYAQKYKLPTPIYETVKEGPSHKSLFQSTVIVDGVRYDSLPGFFNRKAAEQSA 74
Query: 61 AKLAFLHFTSPPP-----PPPPNVQCRYKSVLQNYARRKNLDSPLYSSIR-EGPAHACSF 114
A++A + P + K++LQ YA++ N PLY + E A F
Sbjct: 75 AEVALQELSKSTELGQCVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQKSETLGRAPQF 134
Query: 115 KARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V I G + K ++AE +A + AL ++
Sbjct: 135 TCTVEIGGIKYTGAA-TKTKREAEISAGRTALIAI 168
>gi|115483791|ref|NP_001065557.1| Os11g0109900 [Oryza sativa Japonica Group]
gi|122221791|sp|Q0IV63.1|DRB7_ORYSJ RecName: Full=Double-stranded RNA-binding protein 7; AltName:
Full=dsRNA-binding protein 7
gi|108863922|gb|ABG22335.1| Double-stranded RNA binding motif family protein, expressed [Oryza
sativa Japonica Group]
gi|113644261|dbj|BAF27402.1| Os11g0109900 [Oryza sativa Japonica Group]
gi|215686684|dbj|BAG88937.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768461|dbj|BAH00690.1| unnamed protein product [Oryza sativa Japonica Group]
gi|387538567|gb|AFJ79552.1| double stranded RNA binding protein 1-2 [Oryza sativa Indica Group]
Length = 473
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 86/158 (54%), Gaps = 8/158 (5%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P Y + +EGP+H FK+ V I+ +++SL F N K AE +AA
Sbjct: 34 FKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAA 93
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL + + A+ ++ + KN+L E + + +P Y K +
Sbjct: 94 EVALMEIVKS-------IPANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGL 146
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P FI VE+ G + G A RTKK AE+KAA+ A A+
Sbjct: 147 AP-FICTVEIGGIQYIGAAARTKKDAEIKAARTALLAI 183
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 10/155 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + P Y T K+G H+P FKS+V +N S+ S + K ++ A
Sbjct: 33 VFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 61 AKLAFLHFTSPPPPPP--PNVQ----CRYKSVLQNYARRKNLDSPLYSSIREGPAHACSF 114
A++A + P P VQ C K++LQ YA++ N P Y + A F
Sbjct: 93 AEVALMEIVKSIPANANIPAVQETGLC--KNLLQEYAQKMNYAIPSYICTKSASGLA-PF 149
Query: 115 KARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V I G + + K AE AA+ AL ++
Sbjct: 150 ICTVEIGGIQYIGA-AARTKKDAEIKAARTALLAI 183
>gi|27262831|emb|CAD59424.1| dsRNA-binding protein [Brassica oleracea var. acephala]
Length = 283
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 89/160 (55%), Gaps = 9/160 (5%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA+R L +PLY +I+EGP+H F++ V ++ ++SL F N K AE +AA
Sbjct: 16 FKSRLQEYAQRYKLPTPLYEAIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSAA 75
Query: 143 KVALFSLA-CDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGA- 200
+VAL LA D +++ L H M L KN+L E + + +PLY+ +
Sbjct: 76 EVALQELAKSSDLTQSVSLPVH-EMGLC------KNLLQEYAQKMNYAIPLYQCQRSETL 128
Query: 201 PHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P F VE+ G + G A +TKK+AE+ A + A A+
Sbjct: 129 GRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAI 168
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 7/155 (4%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + + P Y +K+G H P F+S+V VN + + S + K ++ A
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYEAIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AKLAFLHFT-----SPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIR-EGPAHACSF 114
A++A + P + K++LQ YA++ N PLY R E A F
Sbjct: 75 AEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQF 134
Query: 115 KARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V I G + K K+AE +A + AL ++
Sbjct: 135 TCTVEIGGIKYTGA-ATKTKKEAEISAGRTALIAI 168
>gi|27262837|emb|CAD59427.1| dsRNA-binding protein [Brassica oleracea var. italica]
Length = 283
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 89/160 (55%), Gaps = 9/160 (5%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA+R L +PLY +I+EGP+H F++ V ++ ++SL F N K AE +AA
Sbjct: 16 FKSRLQEYAQRYKLPTPLYEAIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSAA 75
Query: 143 KVALFSLA-CDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGA- 200
+VAL LA D +++ L H M L KN+L E + + +PLY+ +
Sbjct: 76 EVALQELAKSSDLTQSVSLPVH-EMGLC------KNLLQEYAQKMNYAIPLYQCQRSETL 128
Query: 201 PHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P F VE+ G + G A +TKK+AE+ A + A A+
Sbjct: 129 GRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAI 168
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 7/155 (4%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + + P Y +K+G H P F+S+V VN + + S + K ++ A
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYEAIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AKLAFLHFT-----SPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIR-EGPAHACSF 114
A++A + P + K++LQ YA++ N PLY R E A F
Sbjct: 75 AEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQF 134
Query: 115 KARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V I G + K K+AE +A + AL ++
Sbjct: 135 TCTVEIGGIKYTGAA-TKTKKEAEISAGRTALIAI 168
>gi|27262835|emb|CAD59426.1| dsRNA-binding protein [Brassica oleracea var. gongylodes]
gi|27262839|emb|CAD59428.1| dsRNA-binding protein [Brassica oleracea var. gemmifera]
Length = 283
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 89/160 (55%), Gaps = 9/160 (5%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA+R L +PLY +I+EGP+H F++ V ++ ++SL F N K AE +AA
Sbjct: 16 FKSRLQEYAQRYKLPTPLYEAIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSAA 75
Query: 143 KVALFSLA-CDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGA- 200
+VAL LA D +++ L H M L KN+L E + + +PLY+ +
Sbjct: 76 EVALQELAKSSDLTQSVSLPVH-EMGLC------KNLLQEYAQKMNYAIPLYQCQRSETL 128
Query: 201 PHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P F VE+ G + G A +TKK+AE+ A + A A+
Sbjct: 129 GRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAI 168
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 7/155 (4%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + + P Y +K+G H P F+S+V VN + + S + K ++ A
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYEAIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AKLAFLHFT-----SPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIR-EGPAHACSF 114
A++A + P + K++LQ YA++ N PLY R E A F
Sbjct: 75 AEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQF 134
Query: 115 KARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V I G + K K+AE +A + AL ++
Sbjct: 135 TCTVEIGGIKYTGAA-TKTKKEAEISAGRTALIAI 168
>gi|8346542|emb|CAB93934.1| BcpLH protein [Brassica rapa subsp. pekinensis]
gi|50511731|gb|AAT77418.1| dsRNA-binding protein LH-c [Brassica napus]
Length = 274
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 89/160 (55%), Gaps = 9/160 (5%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA+R L +PLY +I+EGP+H F++ V ++ ++SL F N K AE +AA
Sbjct: 16 FKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSAA 75
Query: 143 KVALFSLA-CDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGA- 200
+VAL LA D +++ L H M L KN+L E + + +PLY+ +
Sbjct: 76 EVALQELAKSSDLTQSVSLPVH-EMGLC------KNLLQEYAQKMNYAIPLYQCQRSETL 128
Query: 201 PHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P F VE+ G + G A +TKK+AE+ A + A A+
Sbjct: 129 GRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAI 168
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 7/155 (4%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + + P Y T+K+G H P F+S+V VN + + S + K ++ A
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AKLAFLHFT-----SPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIR-EGPAHACSF 114
A++A + P + K++LQ YA++ N PLY R E A F
Sbjct: 75 AEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQF 134
Query: 115 KARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V I G + K K+AE +A + AL ++
Sbjct: 135 TCTVEIGGIKYTGAA-TKTKKEAEISAGRTALIAI 168
>gi|50511727|gb|AAT77416.1| dsRNA-binding protein LH1 [Brassica oleracea var. capitata]
Length = 283
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 88/160 (55%), Gaps = 9/160 (5%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA+R L +PLY +I+EGP+H F++ V ++ ++SL F N K AE +AA
Sbjct: 16 FKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSAA 75
Query: 143 KVALFSLA-CDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGA- 200
+VAL LA D + + L H M L KN+L E + + +PLY+ +
Sbjct: 76 EVALQELAKSSDLTQCVSLPVH-EMGLC------KNLLQEYTQKMNYAIPLYQCQRSETL 128
Query: 201 PHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P F VE+ G + G A +TKK+AE+ A + A A+
Sbjct: 129 GRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAI 168
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 7/155 (4%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + + P Y T+K+G H P F+S+V VN + + S + K ++ A
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AKLAFLHFTSPPPPP-----PPNVQCRYKSVLQNYARRKNLDSPLYSSIR-EGPAHACSF 114
A++A P + K++LQ Y ++ N PLY R E A F
Sbjct: 75 AEVALQELAKSSDLTQCVSLPVHEMGLCKNLLQEYTQKMNYAIPLYQCQRSETLGRAPQF 134
Query: 115 KARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V I G + K K+AE +A + AL ++
Sbjct: 135 TCTVEIGGIKYTGAA-TKTKKEAEISAGRTALIAI 168
>gi|27262829|emb|CAD59423.1| dsRNA-binding protein [Brassica rapa subsp. rapa]
Length = 275
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 89/160 (55%), Gaps = 9/160 (5%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA+R L +PLY +I+EGP+H F++ V ++ ++SL F N K AE +AA
Sbjct: 16 FKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSAA 75
Query: 143 KVALFSLA-CDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGA- 200
+VAL LA D +++ L H M L KN+L E + + +PLY+ +
Sbjct: 76 EVALQELAKSSDLTQSVSLPVH-EMGLC------KNLLQEYAQKMNYAIPLYQCQRSETL 128
Query: 201 PHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P F VE+ G + G A +TKK+AE+ A + A A+
Sbjct: 129 GRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAI 168
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 7/155 (4%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + + P Y T+K+G H P F+S+V VN + + S + K ++ A
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AKLAFLHFT-----SPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIR-EGPAHACSF 114
A++A + P + K++LQ YA++ N PLY R E A F
Sbjct: 75 AEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQF 134
Query: 115 KARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V I G + K K+AE +A + AL ++
Sbjct: 135 TCTVEIGGIKYTGAA-TKTKKEAEISAGRTALIAI 168
>gi|359481028|ref|XP_002270719.2| PREDICTED: uncharacterized protein LOC100243264 [Vitis vinifera]
Length = 495
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 55/75 (73%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
M KT++QELCH+KRW+ P YST KDG H+P F ++VSV GLSF + +SSKE+Q++A
Sbjct: 10 MNKTRLQELCHRKRWNPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNA 69
Query: 61 AKLAFLHFTSPPPPP 75
A LA + T P PPP
Sbjct: 70 AGLAIQYLTDPKPPP 84
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 54/76 (71%)
Query: 169 WDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKA 228
+DD YKN+L E++ +EG +P+Y T K G HMPTF+S VE++GE F G+ +TKK A
Sbjct: 233 FDDYGVYKNLLQEMARKEGYQLPVYSTEKSGVSHMPTFLSTVEIEGETFVGQKAKTKKLA 292
Query: 229 EMKAAKVAYTALIERK 244
EM AAK AYT L ER+
Sbjct: 293 EMNAAKAAYTHLKERR 308
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
+YK +QE+ ++ + LP YST K G H P F S+V + G +F K+ K ++ +A
Sbjct: 238 VYKNLLQEMARKEGYQLPVYSTEKSGVSHMPTFLSTVEIEGETFVGQ-KAKTKKLAEMNA 296
Query: 61 AKLAFLHF 68
AK A+ H
Sbjct: 297 AKAAYTHL 304
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK++LQ AR++ P+YS+ + G +H +F + V I+G TF + K K AE AA
Sbjct: 239 YKNLLQEMARKEGYQLPVYSTEKSGVSHMPTFLSTVEIEGETFVG-QKAKTKKLAEMNAA 297
Query: 143 KVALFSL 149
K A L
Sbjct: 298 KAAYTHL 304
Score = 40.8 bits (94), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 176 KNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVF-YGKAGRTKKKAEMKAAK 234
K L EL R+ P Y T K G PH PTFI+ V V G F R+ K+A+ AA
Sbjct: 12 KTRLQELCHRKRWNPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNAAG 71
Query: 235 VAYTALIERK 244
+A L + K
Sbjct: 72 LAIQYLTDPK 81
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 84 KSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAK 143
K+ LQ RK + P YS+ ++GP H +F A V++ G +F + ++ K+A+ AA
Sbjct: 12 KTRLQELCHRKRWNPPEYSTRKDGPPHNPTFIATVSVGGLSFSTDHPARSSKEAQSNAAG 71
Query: 144 VAL 146
+A+
Sbjct: 72 LAI 74
>gi|224084552|ref|XP_002307335.1| predicted protein [Populus trichocarpa]
gi|222856784|gb|EEE94331.1| predicted protein [Populus trichocarpa]
Length = 213
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 91/159 (57%), Gaps = 7/159 (4%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P+Y +I+EGP+H SF++ V + ++SL F N K AE +AA
Sbjct: 9 FKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVKEVRYDSLPGFFNRKAAEQSAA 68
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL LA +A + S + + G+ KN+L E + + +PLYE K P
Sbjct: 69 EVALVELA-----KAGQINESTSQPVHETGLC-KNLLQEYAQKMNYAIPLYECQKDETPG 122
Query: 203 MP-TFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
F VE+ G + G + +TKK+AE+KAA+ A A+
Sbjct: 123 RGLVFKCTVEIGGIRYIGASAKTKKEAEIKAARTALLAI 161
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 75/157 (47%), Gaps = 11/157 (7%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + P Y T+K+G H+P F+S+V V + + S + K ++ A
Sbjct: 8 VFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVKEVRYDSLPGFFNRKAAEQSA 67
Query: 61 AKLAFLHFT-------SPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIR-EGPAHAC 112
A++A + S P C K++LQ YA++ N PLY + E P
Sbjct: 68 AEVALVELAKAGQINESTSQPVHETGLC--KNLLQEYAQKMNYAIPLYECQKDETPGRGL 125
Query: 113 SFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
FK V I G + K K+AE AA+ AL ++
Sbjct: 126 VFKCTVEIGGIRYIGAS-AKTKKEAEIKAARTALLAI 161
>gi|115486946|ref|NP_001065960.1| Os12g0109900 [Oryza sativa Japonica Group]
gi|122234185|sp|Q0IQN6.1|DRB8_ORYSJ RecName: Full=Double-stranded RNA-binding protein 8; AltName:
Full=dsRNA-binding protein 1; Short=OsDRB1; AltName:
Full=dsRNA-binding protein 8
gi|108862090|gb|ABG21849.1| Double-stranded RNA binding motif family protein, expressed [Oryza
sativa Japonica Group]
gi|113648467|dbj|BAF28979.1| Os12g0109900 [Oryza sativa Japonica Group]
Length = 424
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 86/158 (54%), Gaps = 8/158 (5%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P Y + +EGP+H FK+ V I+ +++SL F N K AE +AA
Sbjct: 34 FKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAA 93
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL + + A+ ++ + KN+L E + + +P Y K +
Sbjct: 94 EVALMEIVKS-------IPANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGL 146
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P FI VE+ G + G A RTKK AE+KAA+ A A+
Sbjct: 147 AP-FICTVEIGGIQYIGAAARTKKDAEIKAARTALLAI 183
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 10/155 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + P Y T K+G H+P FKS+V +N S+ S + K ++ A
Sbjct: 33 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 61 AKLAFLHFTSPPPPPP--PNVQ----CRYKSVLQNYARRKNLDSPLYSSIREGPAHACSF 114
A++A + P P VQ C K++LQ YA++ N P Y + A F
Sbjct: 93 AEVALMEIVKSIPANANIPAVQETGLC--KNLLQEYAQKMNYAIPSYICTKSASGLA-PF 149
Query: 115 KARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V I G + + K AE AA+ AL ++
Sbjct: 150 ICTVEIGGIQYIGA-AARTKKDAEIKAARTALLAI 183
>gi|62912408|gb|AAY21792.1| dsRNA binding protein RBP [Oryza sativa Japonica Group]
Length = 410
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 86/158 (54%), Gaps = 8/158 (5%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P Y + +EGP+H FK+ V I+ +++SL F N K AE +AA
Sbjct: 34 FKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAA 93
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL + + A+ ++ + KN+L E + + +P Y K +
Sbjct: 94 EVALMEIVKS-------IPANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGL 146
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P FI VE+ G + G A RTKK AE+KAA+ A A+
Sbjct: 147 AP-FICTVEIGGIQYIGAAARTKKDAEIKAARTALLAI 183
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 10/155 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + P Y T K+G H+P FKS+V +N S+ S + K ++ A
Sbjct: 33 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 61 AKLAFLHFTSPPPPPP--PNVQ----CRYKSVLQNYARRKNLDSPLYSSIREGPAHACSF 114
A++A + P P VQ C K++LQ YA++ N P Y + A F
Sbjct: 93 AEVALMEIVKSIPANANIPAVQETGLC--KNLLQEYAQKMNYAIPSYICTKSASGLA-PF 149
Query: 115 KARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V I G + + K AE AA+ AL ++
Sbjct: 150 ICTVEIGGIQYIGA-AARTKKDAEIKAARTALLAI 183
>gi|224067130|ref|XP_002302370.1| predicted protein [Populus trichocarpa]
gi|222844096|gb|EEE81643.1| predicted protein [Populus trichocarpa]
Length = 355
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 91/159 (57%), Gaps = 7/159 (4%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P+Y +I+EGP+H SF++ V + ++SL F N K AE +AA
Sbjct: 16 FKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVKDVRYDSLPGFFNRKAAEQSAA 75
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL LA +A + S + + G+ KN+L E + + +PLYE K P
Sbjct: 76 EVALVELA-----KAGEINESTSQPVNETGLC-KNLLQEYAQKMNYAIPLYECQKDETPG 129
Query: 203 MP-TFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
F VE+ G + G + +TKK+AE+KAA+ A A+
Sbjct: 130 RGLVFKCTVEIGGIRYIGASTKTKKEAEIKAARTALLAI 168
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 7/155 (4%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + P Y T+K+G H+P F+S+V V + + S + K ++ A
Sbjct: 15 VFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVKDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AKLAFLHFT-----SPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIR-EGPAHACSF 114
A++A + + P N K++LQ YA++ N PLY + E P F
Sbjct: 75 AEVALVELAKAGEINESTSQPVNETGLCKNLLQEYAQKMNYAIPLYECQKDETPGRGLVF 134
Query: 115 KARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
K V I G + K K+AE AA+ AL ++
Sbjct: 135 KCTVEIGGIRYIGAS-TKTKKEAEIKAARTALLAI 168
>gi|356515734|ref|XP_003526553.1| PREDICTED: double-stranded RNA-binding protein 1-like [Glycine max]
Length = 359
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 92/159 (57%), Gaps = 7/159 (4%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P+Y +I+EGP+H SF++ V ++ ++SL F N K AE +AA
Sbjct: 16 FKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQSAA 75
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAP- 201
+VAL L + + ++ + + G+ KN+L E + + +P+Y+ K P
Sbjct: 76 EVALVELIKSN-----LVNQSITQPVHETGLC-KNLLQEYAQKMNYAMPMYQCKKDETPG 129
Query: 202 HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
F V++ G ++ G A +TKK+AE+KAA+ A A+
Sbjct: 130 RASVFSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAI 168
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 7/155 (4%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + P Y T+K+G H+P F+S+V VN + + S + K ++ A
Sbjct: 15 VFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AKLAFL-----HFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIR-EGPAHACSF 114
A++A + + + P + K++LQ YA++ N P+Y + E P A F
Sbjct: 75 AEVALVELIKSNLVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGRASVF 134
Query: 115 KARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V I G + K K+AE AA+ AL ++
Sbjct: 135 SCTVDIGGILYIG-GAAKTKKEAEIKAARTALLAI 168
>gi|255637537|gb|ACU19095.1| unknown [Glycine max]
Length = 359
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 92/159 (57%), Gaps = 7/159 (4%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P+Y +I+EGP+H SF++ V ++ ++SL F N K AE +AA
Sbjct: 16 FKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQSAA 75
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAP- 201
+VAL L + + ++ + + G+ KN+L E + + +P+Y+ K P
Sbjct: 76 EVALVELIKSN-----LVNQSITQPVHETGLC-KNLLQEYAQKMNYAMPMYQCKKDETPG 129
Query: 202 HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
F V++ G ++ G A +TKK+AE+KAA+ A A+
Sbjct: 130 RASVFSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAI 168
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 7/155 (4%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + P Y T+K+G H+P F+S+V VN + + S + K ++ A
Sbjct: 15 VFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AKLAFL-----HFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIR-EGPAHACSF 114
A++A + + + P + K++LQ YA++ N P+Y + E P A F
Sbjct: 75 AEVALVELIKSNLVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGRASVF 134
Query: 115 KARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V I G + K K+AE AA+ AL ++
Sbjct: 135 SCTVDIGGILYIG-GAAKTKKEAEIKAARTALLAI 168
>gi|357465225|ref|XP_003602894.1| DsRNA-binding protein [Medicago truncatula]
gi|355491942|gb|AES73145.1| DsRNA-binding protein [Medicago truncatula]
Length = 780
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 91/161 (56%), Gaps = 10/161 (6%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P+Y + +EGP+H SF++ V ++ ++SL F N K AE +AA
Sbjct: 17 FKSQLQEYAQKAGLGTPVYETTKEGPSHEPSFRSTVIMNDVRYDSLAGFFNRKAAEQSAA 76
Query: 143 KVALFSLA-CDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAP 201
+VAL LA + ++I H + KN+L E + + +PLY++ K P
Sbjct: 77 EVALMELAKTGEVNQSITQPVH-------ETGLCKNLLQEYAQKMNYAMPLYQSKKDDTP 129
Query: 202 --HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P + V++ G ++ G +TK++AE+KAA+ A A+
Sbjct: 130 PGRAPLYSCTVDIGGMLYIGGTAKTKREAEIKAARTALLAI 170
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 84/175 (48%), Gaps = 12/175 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + P Y T K+G H+P F+S+V +N + + S + K ++ A
Sbjct: 16 VFKSQLQEYAQKAGLGTPVYETTKEGPSHEPSFRSTVIMNDVRYDSLAGFFNRKAAEQSA 75
Query: 61 AKLAFLHFT-------SPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREG--PAHA 111
A++A + S P C K++LQ YA++ N PLY S ++ P A
Sbjct: 76 AEVALMELAKTGEVNQSITQPVHETGLC--KNLLQEYAQKMNYAMPLYQSKKDDTPPGRA 133
Query: 112 CSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSM 166
+ V I G + K ++AE AA+ AL ++ + Q + + H+++
Sbjct: 134 PLYSCTVDIGGMLYIGG-TAKTKREAEIKAARTALLAIQTNASQASENQFGHLTV 187
>gi|242084480|ref|XP_002442665.1| hypothetical protein SORBIDRAFT_08g000900 [Sorghum bicolor]
gi|241943358|gb|EES16503.1| hypothetical protein SORBIDRAFT_08g000900 [Sorghum bicolor]
Length = 394
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 88/158 (55%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P Y +++EGP+H FK+ V ++ T+ESL F + K AE +AA
Sbjct: 38 FKSRLQEYAQKAGLPTPEYHTLKEGPSHEPVFKSTVLVNNTTYESLPGFFSRKAAEQSAA 97
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL +A + + S+ + KN+L E + + +P Y K +
Sbjct: 98 EVALMEIAM-----SAPVAETRSIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKQASGV 152
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P FI VE+ G + G A RTKK+AE+KAA+ A A+
Sbjct: 153 AP-FICTVEIGGIQYIGAAARTKKEAEIKAARTALLAI 189
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 12/157 (7%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + P Y T+K+G H+P FKS+V VN ++ S S K ++ A
Sbjct: 37 VFKSRLQEYAQKAGLPTPEYHTLKEGPSHEPVFKSTVLVNNTTYESLPGFFSRKAAEQSA 96
Query: 61 AKLAFLHFTSPPPPPP----PNVQ----CRYKSVLQNYARRKNLDSPLYSSIREGPAHAC 112
A++A + P P VQ C K++LQ YA++ N P Y ++ +
Sbjct: 97 AEVALMEIAMSAPVAETRSIPAVQETGLC--KNLLQEYAQKMNYAIPSYICTKQA-SGVA 153
Query: 113 SFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V I G + + K+AE AA+ AL ++
Sbjct: 154 PFICTVEIGGIQYIGA-AARTKKEAEIKAARTALLAI 189
>gi|224146029|ref|XP_002325853.1| predicted protein [Populus trichocarpa]
gi|222862728|gb|EEF00235.1| predicted protein [Populus trichocarpa]
Length = 291
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 123/295 (41%), Gaps = 63/295 (21%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK+ +Q +CHQ+ W LP Y K G DH P F ++V+VN SF S SSK++Q+DA
Sbjct: 1 MYKSNLQAVCHQRGWELPAYQVTKQGQDHSPLFSATVTVNATSFSSPSPSSSSKKAQSDA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCRYKSVLQNYAR---RKNLDSPLYSSIREGPAHACSFKAR 117
AKLA+ HF+ P P C S N AR R L L ++ P +
Sbjct: 61 AKLAYDHFSLISSPSPYLSGCWSGSAGGN-ARLSPRGKLQLNLQAA---NPTPLSNEAVA 116
Query: 118 VTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDD----FQEAIFLYAHVSMYLWDDGV 173
V + +FE A + +L + EA+ + + + +G+
Sbjct: 117 VGKNDESFEGCSSGSTGGNARLSPRGKLQLNLQAANPTPLSNEAVAVGKNDESF---EGM 173
Query: 174 --FYKNVLHELSLREGLPVPLYETIKCGAPH----------------------------- 202
+KN L + + +P+Y + G PH
Sbjct: 174 LHLFKNQLQTYAQKRNFSLPVYSCERMGPPHAIRFKCKFTINGQTYESREYFPTLSKAEK 233
Query: 203 -----MPTF-------------ISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTA 239
PT+ IS VE+DG F GK RTKK+AEM AAK+AYTA
Sbjct: 234 REGCGFPTYCTEKSGEAHAPTFISTVEIDGVSFTGKEARTKKQAEMSAAKIAYTA 288
>gi|356510122|ref|XP_003523789.1| PREDICTED: double-stranded RNA-binding protein 1-like [Glycine max]
Length = 359
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 92/159 (57%), Gaps = 7/159 (4%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P+Y +I+EGP+H SF++ V ++ ++SL F N K AE +AA
Sbjct: 16 FKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQSAA 75
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAP- 201
+VAL L + + ++ + + G+ KN+L E + + +P+Y+ K P
Sbjct: 76 EVALVELVKSN-----AVNQSITQPVHETGLC-KNLLQEYAQKMNYAMPMYQCKKDETPG 129
Query: 202 HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
F V++ G ++ G A +TKK+AE+KAA+ A A+
Sbjct: 130 RASVFSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAI 168
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 11/157 (7%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + P Y T+K+G H+P F+S+V VN + + S + K ++ A
Sbjct: 15 VFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AKLAFLHFT-------SPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIR-EGPAHAC 112
A++A + S P C K++LQ YA++ N P+Y + E P A
Sbjct: 75 AEVALVELVKSNAVNQSITQPVHETGLC--KNLLQEYAQKMNYAMPMYQCKKDETPGRAS 132
Query: 113 SFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V I G + K K+AE AA+ AL ++
Sbjct: 133 VFSCTVDIGGILYIG-GAAKTKKEAEIKAARTALLAI 168
>gi|387538561|gb|AFJ79549.1| double stranded RNA binding protein 1-1 [Oryza sativa Indica Group]
Length = 377
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 85/158 (53%), Gaps = 8/158 (5%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P Y + +EGP+H FK+ V I+ ++ SL F N K AE +AA
Sbjct: 36 FKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSAA 95
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL + + A+ ++ + KN+L E + + +P Y K +
Sbjct: 96 EVALMEIVKS-------IPANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKPASGL 148
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P FI VE+ G + G A RTKK AE+KAA+ A A+
Sbjct: 149 AP-FICTVEIGGIQYIGAAARTKKDAEIKAARTALLAI 185
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 12/156 (7%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + P Y T K+G H+P FKS+V +N S+ S + K ++ A
Sbjct: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94
Query: 61 AKLAFLHFTSPPPPPP--PNVQ----CRYKSVLQNYARRKNLDSPLYSSIREGPAHACS- 113
A++A + P P VQ C K++LQ YA++ N P Y + PA +
Sbjct: 95 AEVALMEIVKSIPANANIPAVQETGLC--KNLLQEYAQKMNYAIPSYICTK--PASGLAP 150
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V I G + + K AE AA+ AL ++
Sbjct: 151 FICTVEIGGIQYIGA-AARTKKDAEIKAARTALLAI 185
>gi|18391056|ref|NP_563850.1| dsRNA-binding hyponastic leave 1 protein [Arabidopsis thaliana]
gi|75218980|sp|O04492.1|DRB1_ARATH RecName: Full=Double-stranded RNA-binding protein 1; AltName:
Full=Protein HYPONASTIC LEAVES 1; AltName:
Full=dsRNA-binding protein 1; Short=AtDRB1
gi|12247457|gb|AAG49890.1|AF276440_1 hyponastic leave 1 [Arabidopsis thaliana]
gi|2160163|gb|AAB60726.1| F21M12.9 gene product [Arabidopsis thaliana]
gi|15451102|gb|AAK96822.1| Unknown protein [Arabidopsis thaliana]
gi|20148393|gb|AAM10087.1| unknown protein [Arabidopsis thaliana]
gi|332190360|gb|AEE28481.1| dsRNA-binding hyponastic leave 1 protein [Arabidopsis thaliana]
Length = 419
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 87/159 (54%), Gaps = 7/159 (4%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P+Y ++EGP+H F++ V +DG + SL F N K AE +AA
Sbjct: 16 FKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAA 75
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGA-P 201
+VAL LA ++ L VS + + G KN+L E + + +PLY+ K
Sbjct: 76 EVALRELA-----KSSELSQCVSQPVHETG-LCKNLLQEYAQKMNYAIPLYQCQKVETLG 129
Query: 202 HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+ F VE+ G + G A RTKK AE+ A + A A+
Sbjct: 130 RVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAI 168
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 7/158 (4%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + + P Y +K+G H F+S+V ++G+ ++S + K ++ A
Sbjct: 15 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 74
Query: 61 AKLAFLHFT-----SPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIR-EGPAHACSF 114
A++A S P + K++LQ YA++ N PLY + E F
Sbjct: 75 AEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQF 134
Query: 115 KARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACD 152
V I G + + K AE +A + AL ++ D
Sbjct: 135 TCTVEIGGIKYTGA-ATRTKKDAEISAGRTALLAIQSD 171
>gi|50511725|gb|AAT77415.1| dsRNA-binding protein LH [Brassica rapa subsp. chinensis]
Length = 274
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 88/160 (55%), Gaps = 9/160 (5%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA+R L +PLY +I+EGP+H ++ V ++ ++SL F N K AE +AA
Sbjct: 16 FKSRLQEYAQRYKLPTPLYETIKEGPSHKPLIQSTVIVNDVRYDSLPGFFNRKAAEQSAA 75
Query: 143 KVALFSLA-CDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGA- 200
+VAL LA D +++ L H M L KN+L E + + +PLY+ +
Sbjct: 76 EVALQELAKSSDLTQSVSLPVH-EMGLC------KNLLQEYAQKMNYAIPLYQCQRSETL 128
Query: 201 PHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P F VE+ G + G A +TKK+AE+ A + A A+
Sbjct: 129 GRAPQFTCTVEIGGIKYTGAATKTKKEAEISAGRTALIAI 168
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 7/155 (4%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + + P Y T+K+G H P +S+V VN + + S + K ++ A
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLIQSTVIVNDVRYDSLPGFFNRKAAEQSA 74
Query: 61 AKLAFLHFT-----SPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIR-EGPAHACSF 114
A++A + P + K++LQ YA++ N PLY R E A F
Sbjct: 75 AEVALQELAKSSDLTQSVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQF 134
Query: 115 KARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V I G + K K+AE +A + AL ++
Sbjct: 135 TCTVEIGGIKYTGAA-TKTKKEAEISAGRTALIAI 168
>gi|27262833|emb|CAD59425.1| dsRNA-binding protein [Brassica oleracea var. botrytis]
Length = 283
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 88/160 (55%), Gaps = 9/160 (5%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA+R L +PLY +I+EGP+H F++ V ++ ++SL F N K AE +AA
Sbjct: 16 FKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNYVRYDSLPGFFNRKAAEQSAA 75
Query: 143 KVALFSLA-CDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGA- 200
+VAL LA D + + L H M L KN+L E + + +PLY+ +
Sbjct: 76 EVALQGLAKSSDLTQCVSLPVH-EMGLC------KNLLQEYAQKMNYAIPLYQCQRSETL 128
Query: 201 PHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P F VE+ G + G A +TKK+AE+ + + A A+
Sbjct: 129 GRAPQFTCTVEIGGIKYTGAATKTKKEAEISSGRTALIAI 168
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 7/155 (4%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + + P Y T+K+G H P F+S+V VN + + S + K ++ A
Sbjct: 15 VFKSRLQEYAQRYKLPTPLYETIKEGPSHKPLFQSTVIVNYVRYDSLPGFFNRKAAEQSA 74
Query: 61 AKLAFLHFTSPPPPP-----PPNVQCRYKSVLQNYARRKNLDSPLYSSIR-EGPAHACSF 114
A++A P + K++LQ YA++ N PLY R E A F
Sbjct: 75 AEVALQGLAKSSDLTQCVSLPVHEMGLCKNLLQEYAQKMNYAIPLYQCQRSETLGRAPQF 134
Query: 115 KARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V I G + K K+AE ++ + AL ++
Sbjct: 135 TCTVEIGGIKYTGAA-TKTKKEAEISSGRTALIAI 168
>gi|115463113|ref|NP_001055156.1| Os05g0307400 [Oryza sativa Japonica Group]
gi|122169278|sp|Q0DJA3.1|DRB3_ORYSJ RecName: Full=Double-stranded RNA-binding protein 3; AltName:
Full=dsRNA-binding protein 3
gi|113578707|dbj|BAF17070.1| Os05g0307400 [Oryza sativa Japonica Group]
gi|215704133|dbj|BAG92973.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 437
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 85/158 (53%), Gaps = 8/158 (5%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P Y + +EGP+H FK+ V I+ ++ SL F N K AE +AA
Sbjct: 36 FKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSAA 95
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL + + A+ ++ + KN+L E + + +P Y K +
Sbjct: 96 EVALMEIVKS-------IPANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKPASGL 148
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P F+ VE+ G + G A RTKK AE+KAA+ A A+
Sbjct: 149 AP-FLCTVEIGGIQYIGAAARTKKDAEIKAARTALLAI 185
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 12/156 (7%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + P Y T K+G H+P FKS+V +N S+ S + K ++ A
Sbjct: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94
Query: 61 AKLAFLHFTSPPPPPP--PNVQ----CRYKSVLQNYARRKNLDSPLYSSIREGPAHACS- 113
A++A + P P VQ C K++LQ YA++ N P Y + PA +
Sbjct: 95 AEVALMEIVKSIPANANIPAVQETGLC--KNLLQEYAQKMNYAIPSYICTK--PASGLAP 150
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V I G + + K AE AA+ AL ++
Sbjct: 151 FLCTVEIGGIQYIGA-AARTKKDAEIKAARTALLAI 185
>gi|297849274|ref|XP_002892518.1| hypothetical protein ARALYDRAFT_471071 [Arabidopsis lyrata subsp.
lyrata]
gi|297338360|gb|EFH68777.1| hypothetical protein ARALYDRAFT_471071 [Arabidopsis lyrata subsp.
lyrata]
Length = 376
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 89/159 (55%), Gaps = 7/159 (4%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P+Y +++EGP+H F++ V ++G + SL F N K AE +AA
Sbjct: 16 FKSRLQEYAQKYKLQTPVYETVKEGPSHKSFFQSTVILNGVRYNSLPGFFNRKAAEQSAA 75
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL LA ++ L VS + + G+ KN+L E + + +PLY+ +
Sbjct: 76 EVALQELA-----KSSELSQCVSQPVHETGLC-KNLLQEYAQKMNYAIPLYQCQRIETLG 129
Query: 203 MPT-FISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
T F VE+ G + G A RTKK AE+ A + A A+
Sbjct: 130 RATQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAI 168
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 19/203 (9%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + + P Y T+K+G H F+S+V +NG+ ++S + K ++ A
Sbjct: 15 VFKSRLQEYAQKYKLQTPVYETVKEGPSHKSFFQSTVILNGVRYNSLPGFFNRKAAEQSA 74
Query: 61 AKLAFLHFT-----SPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIR-EGPAHACSF 114
A++A S P + K++LQ YA++ N PLY R E A F
Sbjct: 75 AEVALQELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQRIETLGRATQF 134
Query: 115 KARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVF 174
V I G + + K AE +A + AL ++ + +++ +
Sbjct: 135 TCTVEIGGIKYTGAA-TRTKKDAEISAGRTALLAIQSESKNNLANYNTQLTVLPCEKKTL 193
Query: 175 YKNVLHELSLREGLPVPLYETIK 197
P+PL ETIK
Sbjct: 194 LA------------PIPLKETIK 204
>gi|414588756|tpg|DAA39327.1| TPA: bcpLH protein [Zea mays]
Length = 1158
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA+R + +P Y +++EGP+H FK+ V ++ +ESL F + K AE +AA
Sbjct: 762 FKSRLQEYAQRVGIPTPEYHTLKEGPSHEPVFKSTVFVNNTKYESLPGFFSRKAAEQSAA 821
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL +A I +M + KN+L E + + +P Y K +
Sbjct: 822 EVALMEIAMSAPVTEIR-----NMPAVQETGLCKNLLQEYAQKMNYAIPSYICTKQASGV 876
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P F+ VE+ G ++ G A RTKK+AE+KAA+ A A+
Sbjct: 877 AP-FVCSVEIGGILYIGAAARTKKEAEIKAARTALLAI 913
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 75/157 (47%), Gaps = 12/157 (7%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + P Y T+K+G H+P FKS+V VN + S S K ++ A
Sbjct: 761 VFKSRLQEYAQRVGIPTPEYHTLKEGPSHEPVFKSTVFVNNTKYESLPGFFSRKAAEQSA 820
Query: 61 AKLAFLHFTSPPPPPP----PNVQ----CRYKSVLQNYARRKNLDSPLYSSIREGPAHAC 112
A++A + P P VQ C K++LQ YA++ N P Y ++ A
Sbjct: 821 AEVALMEIAMSAPVTEIRNMPAVQETGLC--KNLLQEYAQKMNYAIPSYICTKQASGVA- 877
Query: 113 SFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V I G + + K+AE AA+ AL ++
Sbjct: 878 PFVCSVEIGGILYIGAA-ARTKKEAEIKAARTALLAI 913
>gi|226506372|ref|NP_001150455.1| LOC100284085 [Zea mays]
gi|195639400|gb|ACG39168.1| bcpLH protein [Zea mays]
Length = 434
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA+R + +P Y +++EGP+H FK+ V ++ +ESL F + K AE +AA
Sbjct: 38 FKSRLQEYAQRVGIPTPEYHTLKEGPSHEPVFKSTVFVNNTKYESLPGFFSRKAAEQSAA 97
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL +A I +M + KN+L E + + +P Y K +
Sbjct: 98 EVALMEIAMSAPVTEIR-----NMPAVQETGLCKNLLQEYAQKMNYAIPSYICTKQASGV 152
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P F+ VE+ G ++ G A RTKK+AE+KAA+ A A+
Sbjct: 153 AP-FVCSVEIGGILYIGAAARTKKEAEIKAARTALLAI 189
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 75/157 (47%), Gaps = 12/157 (7%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + P Y T+K+G H+P FKS+V VN + S S K ++ A
Sbjct: 37 VFKSRLQEYAQRVGIPTPEYHTLKEGPSHEPVFKSTVFVNNTKYESLPGFFSRKAAEQSA 96
Query: 61 AKLAFLHFTSPPPPPP----PNVQ----CRYKSVLQNYARRKNLDSPLYSSIREGPAHAC 112
A++A + P P VQ C K++LQ YA++ N P Y ++ +
Sbjct: 97 AEVALMEIAMSAPVTEIRNMPAVQETGLC--KNLLQEYAQKMNYAIPSYICTKQA-SGVA 153
Query: 113 SFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V I G + + K+AE AA+ AL ++
Sbjct: 154 PFVCSVEIGGILYIGA-AARTKKEAEIKAARTALLAI 189
>gi|9229939|dbj|BAB00641.1| dsRNA-binding protein ODB1 [Oryza sativa Japonica Group]
Length = 425
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 86/159 (54%), Gaps = 9/159 (5%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P Y + +EGP+H FK+ V I+ +++SL F N K AE +AA
Sbjct: 34 FKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAA 93
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL + + A+ ++ + KN+L E + + +P Y K +
Sbjct: 94 EVALMEIVKS-------IPANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGL 146
Query: 203 MPTFISMVEVDGEVFY-GKAGRTKKKAEMKAAKVAYTAL 240
P FI VE+ E Y G A RTKK AE+KAA+ A A+
Sbjct: 147 AP-FICTVEIWWEYKYIGAAARTKKDAEIKAARTALLAI 184
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + P Y T K+G H+P FKS+V +N S+ S + K ++ A
Sbjct: 33 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 61 AKLAFLHFTSPPPPPP--PNVQ----CRYKSVLQNYARRKNLDSPLY 101
A++A + P P VQ C K++LQ YA++ N P Y
Sbjct: 93 AEVALMEIVKSIPANANIPAVQETGLC--KNLLQEYAQKMNYAIPSY 137
>gi|359488195|ref|XP_002272597.2| PREDICTED: double-stranded RNA-binding protein 4-like [Vitis
vinifera]
gi|296087161|emb|CBI33535.3| unnamed protein product [Vitis vinifera]
Length = 333
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 86/159 (54%), Gaps = 8/159 (5%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+ LQ Y +R + P+Y ++ EG HA F++ V +DG T+ S F + K AE A
Sbjct: 23 HKNRLQEYTQRSAIPLPIYQTVNEGFQHAPKFRSTVLVDGATYTSPNTFSHRKAAEQDVA 82
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
++AL ++ E L + +D VF K++L+E +++ L P Y T++
Sbjct: 83 RLALEFISKKIKDEGCPL-------IREDTVFCKSILNEFAVKMNLEKPTYTTVQPEG-L 134
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALI 241
+P F+S + +G + G AGR KK+AE AA+ +++
Sbjct: 135 LPVFVSSLVFNGVTYTGDAGRNKKEAEQLAARTVILSIL 173
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 25/206 (12%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
M+K ++QE + LP Y T+ +G H P+F+S+V V+G ++ S + K ++ D
Sbjct: 22 MHKNRLQEYTQRSAIPLPIYQTVNEGFQHAPKFRSTVLVDGATYTSPNTFSHRKAAEQDV 81
Query: 61 AKLAFLHFTSP-------PPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIR-EGPAHAC 112
A+LA L F S P V C KS+L +A + NL+ P Y++++ EG
Sbjct: 82 ARLA-LEFISKKIKDEGCPLIREDTVFC--KSILNEFAVKMNLEKPTYTTVQPEGLLPV- 137
Query: 113 SFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFS---------LACDDFQEAIFLYAH 163
F + + +G T+ + +N K+AE AA+ + S L + + + LYA
Sbjct: 138 -FVSSLVFNGVTYTG-DAGRNKKEAEQLAARTVILSILGNSGSGTLLSEIIKSKVKLYA- 194
Query: 164 VSMYLWDDGVFYKNVLHELSLREGLP 189
+++ D + + + L G+P
Sbjct: 195 -ALHRVKDPSYIHTGILPIGLTSGIP 219
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 173 VFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRT-KKKAEMK 231
+ +KN L E + R +P+P+Y+T+ G H P F S V VDG + + +K AE
Sbjct: 21 LMHKNRLQEYTQRSAIPLPIYQTVNEGFQHAPKFRSTVLVDGATYTSPNTFSHRKAAEQD 80
Query: 232 AAKVA 236
A++A
Sbjct: 81 VARLA 85
>gi|242083576|ref|XP_002442213.1| hypothetical protein SORBIDRAFT_08g016430 [Sorghum bicolor]
gi|241942906|gb|EES16051.1| hypothetical protein SORBIDRAFT_08g016430 [Sorghum bicolor]
Length = 198
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 90/159 (56%), Gaps = 12/159 (7%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEF-FKNLKQAEHAA 141
+K+ L YA++ + PLY I+EGPAHA F A VTIDG TF E + LK AE AA
Sbjct: 36 FKTQLSVYAQKLSKVPPLYKHIQEGPAHAPRFNAEVTIDGQTFGRPELLYYKLKDAEAAA 95
Query: 142 AKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAP 201
A+VAL L QE + YKN + E++ +EG+ +P+Y T+
Sbjct: 96 AEVALDLLPPIPPQEYTI-----------PSLSYKNFIQEIAQKEGISLPVYNTVPTNKE 144
Query: 202 HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+ + S V++ GE+F G+ G +KK+AEM AAK+AY L
Sbjct: 145 NSTAYKSSVQIKGEIFEGEPGTSKKQAEMNAAKIAYHHL 183
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 2/139 (1%)
Query: 18 PRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPPPPPPP 77
P Y +++G H PRF + V+++G +F + AA L P PP
Sbjct: 52 PLYKHIQEGPAHAPRFNAEVTIDGQTFGRPELLYYKLKDAEAAAAEVALDLLPPIPPQEY 111
Query: 78 NV-QCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQ 136
+ YK+ +Q A+++ + P+Y+++ ++ ++K+ V I G FE E + KQ
Sbjct: 112 TIPSLSYKNFIQEIAQKEGISLPVYNTVPTNKENSTAYKSSVQIKGEIFEG-EPGTSKKQ 170
Query: 137 AEHAAAKVALFSLACDDFQ 155
AE AAK+A LA + +
Sbjct: 171 AEMNAAKIAYHHLALPELE 189
>gi|168061835|ref|XP_001782891.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
gi|162665613|gb|EDQ52291.1| double-stranded RNA binding protein [Physcomitrella patens subsp.
patens]
Length = 151
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 89/158 (56%), Gaps = 10/158 (6%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YKS LQ YA+++ L SP Y ++EG +H FK+ V ++G +ES + L+ AEHAAA
Sbjct: 2 YKSQLQEYAQKQGLMSPSYEYVKEGASHEPRFKSTVWVNGRGYESAPGYPTLRSAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
K AL D Q+ F V + KN+L E + + G P+P Y++++ G H
Sbjct: 62 KAAL-----DFLQKTQFKVVPV-----HESGLCKNLLQEFAQKHGYPLPQYKSVRQGEEH 111
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
F S VE+ G + G ++KK+AE+KAA+ A A+
Sbjct: 112 SLVFSSTVEIAGVSYSGGCAKSKKEAEIKAARTALLAI 149
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 82/152 (53%), Gaps = 6/152 (3%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKS--SKESQN 58
MYK+++QE ++ P Y +K+GA H+PRFKS+V VNG + S+ + S E
Sbjct: 1 MYKSQLQEYAQKQGLMSPSYEYVKEGASHEPRFKSTVWVNGRGYESAPGYPTLRSAEHAA 60
Query: 59 DAAKLAFLHFTS-PPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKAR 117
A L FL T P + C K++LQ +A++ P Y S+R+G H+ F +
Sbjct: 61 AKAALDFLQKTQFKVVPVHESGLC--KNLLQEFAQKHGYPLPQYKSVRQGEEHSLVFSST 118
Query: 118 VTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V I G ++ S K+ K+AE AA+ AL ++
Sbjct: 119 VEIAGVSY-SGGCAKSKKEAEIKAARTALLAI 149
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 174 FYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVF 217
YK+ L E + ++GL P YE +K GA H P F S V V+G +
Sbjct: 1 MYKSQLQEYAQKQGLMSPSYEYVKEGASHEPRFKSTVWVNGRGY 44
>gi|115476208|ref|NP_001061700.1| Os08g0384100 [Oryza sativa Japonica Group]
gi|75225116|sp|Q6YW64.1|DRB4_ORYSJ RecName: Full=Double-stranded RNA-binding protein 4; AltName:
Full=dsRNA-binding protein 4
gi|40253891|dbj|BAD05825.1| unknown protein [Oryza sativa Japonica Group]
gi|113623669|dbj|BAF23614.1| Os08g0384100 [Oryza sativa Japonica Group]
gi|387538563|gb|AFJ79550.1| double stranded RNA binding protein 1-4 [Oryza sativa Indica Group]
Length = 312
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 79/161 (49%), Gaps = 3/161 (1%)
Query: 81 CRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHA 140
C YKS LQ Y ++ N P+Y + +G H FK+ V +DG F S + +K AE
Sbjct: 37 CNYKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQD 96
Query: 141 AAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGA 200
AAKVA +L + +E V + D VF K++LHE + + P Y K
Sbjct: 97 AAKVAYDTLL--ERKETETDDTDVFELIDQDVVFSKSILHEYTTKTKTDQPEYSVTKTEG 154
Query: 201 PHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALI 241
P ++S V G + G A R KK AE KAA+ A +L+
Sbjct: 155 SVTP-YVSSVSFAGHTYTGGAARNKKDAEQKAARAAVKSLL 194
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 11/162 (6%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
YK+K+QE Q LP Y T G H +FKS+V V+G F S+ + K+++ DAA
Sbjct: 39 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAA 98
Query: 62 KLAFLHFTSPPPPPPPNVQCRY---------KSVLQNYARRKNLDSPLYSSIREGPAHAC 112
K+A+ + KS+L Y + D P Y S+ +
Sbjct: 99 KVAYDTLLERKETETDDTDVFELIDQDVVFSKSILHEYTTKTKTDQPEY-SVTKTEGSVT 157
Query: 113 SFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDF 154
+ + V+ GHT+ + +N K AE AA+ A+ SL ++
Sbjct: 158 PYVSSVSFAGHTY-TGGAARNKKDAEQKAARAAVKSLLATNY 198
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGK-AGRTKKKAEMKAA 233
YK+ L E + +P+Y T G H F S V VDGE F R K AE AA
Sbjct: 39 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAA 98
Query: 234 KVAYTALIERK 244
KVAY L+ERK
Sbjct: 99 KVAYDTLLERK 109
>gi|125561394|gb|EAZ06842.1| hypothetical protein OsI_29078 [Oryza sativa Indica Group]
Length = 310
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 79/161 (49%), Gaps = 3/161 (1%)
Query: 81 CRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHA 140
C YKS LQ Y ++ N P+Y + +G H FK+ V +DG F S + +K AE
Sbjct: 35 CNYKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQD 94
Query: 141 AAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGA 200
AAKVA +L + +E V + D VF K++LHE + + P Y K
Sbjct: 95 AAKVAYDTLL--ERKETETDDTDVFELIDQDVVFSKSILHEYTTKTKTDQPEYSVTKTEG 152
Query: 201 PHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALI 241
P ++S V G + G A R KK AE KAA+ A +L+
Sbjct: 153 SVTP-YVSSVSFAGHTYTGGAARNKKDAEQKAARAAVKSLL 192
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 11/162 (6%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
YK+K+QE Q LP Y T G H +FKS+V V+G F S+ + K+++ DAA
Sbjct: 37 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAA 96
Query: 62 KLAFLHFTSPPPPPPPNVQCRY---------KSVLQNYARRKNLDSPLYSSIREGPAHAC 112
K+A+ + KS+L Y + D P Y S+ +
Sbjct: 97 KVAYDTLLERKETETDDTDVFELIDQDVVFSKSILHEYTTKTKTDQPEY-SVTKTEGSVT 155
Query: 113 SFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDF 154
+ + V+ GHT+ + +N K AE AA+ A+ SL ++
Sbjct: 156 PYVSSVSFAGHTY-TGGAARNKKDAEQKAARAAVKSLLATNY 196
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGK-AGRTKKKAEMKAA 233
YK+ L E + +P+Y T G H F S V VDGE F R K AE AA
Sbjct: 37 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAA 96
Query: 234 KVAYTALIERK 244
KVAY L+ERK
Sbjct: 97 KVAYDTLLERK 107
>gi|255569490|ref|XP_002525712.1| double-stranded RNA binding protein, putative [Ricinus communis]
gi|223535012|gb|EEF36695.1| double-stranded RNA binding protein, putative [Ricinus communis]
Length = 280
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 48/73 (65%)
Query: 171 DGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEM 230
D YKN+L EL+ +EG +P Y T+ G H PTF S VEV GE F G+ RTKK+AE
Sbjct: 3 DEFAYKNLLQELAQKEGYGLPSYSTVTFGESHKPTFASTVEVKGEFFTGQQTRTKKQAEF 62
Query: 231 KAAKVAYTALIER 243
AAKVAY AL +R
Sbjct: 63 NAAKVAYKALKQR 75
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
YK +QEL ++ + LP YST+ G H P F S+V V G F + ++ K+++ +AA
Sbjct: 7 YKNLLQELAQKEGYGLPSYSTVTFGESHKPTFASTVEVKG-EFFTGQQTRTKKQAEFNAA 65
Query: 62 KLAF 65
K+A+
Sbjct: 66 KVAY 69
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 322 LLCNRVRVYTRIPDIAFPKGITLMPISEDKWVAV 355
LL N+V V+ R ++ +P G T++P+S+D WVAV
Sbjct: 240 LLHNKVTVHPRGTNMTYPPGSTVLPMSDDNWVAV 273
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK++LQ A+++ P YS++ G +H +F + V + G F + + KQAE AA
Sbjct: 7 YKNLLQELAQKEGYGLPSYSTVTFGESHKPTFASTVEVKGEFFTGQQ-TRTKKQAEFNAA 65
Query: 143 KVALFSL 149
KVA +L
Sbjct: 66 KVAYKAL 72
>gi|116787066|gb|ABK24361.1| unknown [Picea sitchensis]
Length = 346
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 106/225 (47%), Gaps = 15/225 (6%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K LQ Y ++ + P+Y ++ EG H FK VT++G ++S F + K A++AAA
Sbjct: 2 FKGRLQEYTQKNSFPLPVYDTVNEGQDHIPRFKCTVTVNGARYDSPPGFNHKKPAQNAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+ A+ L + + V + KNVL +++L++ +P P Y+ K G H
Sbjct: 62 EAAVKKL----VNQGLLPIEEVILPKKP-----KNVLEDIALKKNMPPPSYKFSKEGEAH 112
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL-----IERKLIFSLPFHGGRSC 257
PTF ++VE++G + G +KK A KAA A A+ +I + H C
Sbjct: 113 CPTFTAIVEINGAFYAGDPANSKKDATNKAACKAIRAIDPHYFQAESIINNGSEHPTEEC 172
Query: 258 SIGSITHTVKADG-VPNSTLSSDLDVTLDPNFIQKSMSVSSPVLE 301
+ + AD N+ + D L N I+K ++P +E
Sbjct: 173 DVSKSDSKIPADNWTSNNQIVGGSDSHLPANCIEKVTVENAPAVE 217
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 82/157 (52%), Gaps = 3/157 (1%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
M+K ++QE + + LP Y T+ +G DH PRFK +V+VNG + S K +QN A
Sbjct: 1 MFKGRLQEYTQKNSFPLPVYDTVNEGQDHIPRFKCTVTVNGARYDSPPGFNHKKPAQNAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQC--RYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARV 118
A+ A + P V + K+VL++ A +KN+ P Y +EG AH +F A V
Sbjct: 61 AEAAVKKLVNQGLLPIEEVILPKKPKNVLEDIALKKNMPPPSYKFSKEGEAHCPTFTAIV 120
Query: 119 TIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQ 155
I+G F + + + K A + AA A+ ++ FQ
Sbjct: 121 EING-AFYAGDPANSKKDATNKAACKAIRAIDPHYFQ 156
>gi|242081359|ref|XP_002445448.1| hypothetical protein SORBIDRAFT_07g019380 [Sorghum bicolor]
gi|241941798|gb|EES14943.1| hypothetical protein SORBIDRAFT_07g019380 [Sorghum bicolor]
Length = 298
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 11/164 (6%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+ LQ++A R P+Y EG +H F+ V + G F S F K+AE AA
Sbjct: 48 HKNRLQSFAERTYKKPPVYKVESEGASHQPKFRCTVEVGGQQFSSAGSFDRKKEAEQDAA 107
Query: 143 KVA---LFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCG 199
++A L ++ DD +EA L + D VF K++L+E +++ P Y +
Sbjct: 108 RIAYEILSAVGEDDIKEAFGL-------IDQDAVFCKSILNEFAVKTKTTWPSYSLVYIE 160
Query: 200 APHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER 243
P + F ++V DG + G++ R KK AE AA+ +++ +
Sbjct: 161 KP-LTLFAAIVVFDGNSYTGESARNKKDAEQNAARAVIKSILAK 203
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 15/159 (9%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
M+K ++Q + P Y +GA H P+F+ +V V G F S+ S KE++ DA
Sbjct: 47 MHKNRLQSFAERTYKKPPVYKVESEGASHQPKFRCTVEVGGQQFSSAGSFDRKKEAEQDA 106
Query: 61 AKLAFLHFTSPPPPPPPN---------VQCRYKSVLQNYARRKNLDSPLYSSIR-EGPAH 110
A++A+ ++ V C KS+L +A + P YS + E P
Sbjct: 107 ARIAYEILSAVGEDDIKEAFGLIDQDAVFC--KSILNEFAVKTKTTWPSYSLVYIEKP-- 162
Query: 111 ACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F A V DG+++ E +N K AE AA+ + S+
Sbjct: 163 LTLFAAIVVFDGNSYTG-ESARNKKDAEQNAARAVIKSI 200
>gi|227206366|dbj|BAH57238.1| AT1G09700 [Arabidopsis thaliana]
Length = 403
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 23/159 (14%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P+Y ++EGP+H F++ V +DG + SL F N K AE
Sbjct: 16 FKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAE---- 71
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGA-P 201
L VS + + G+ KN+L E + + +PLY+ K
Sbjct: 72 -----------------LSQCVSQPVHETGLC-KNLLQEYAQKMNYAIPLYQCQKVETLG 113
Query: 202 HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+ F VE+ G + G A RTKK AE+ A + A A+
Sbjct: 114 RVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAI 152
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 13/153 (8%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + + P Y +K+G H F+S+V ++G+ ++S + K ++
Sbjct: 15 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAELSQ 74
Query: 61 AKLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIR-EGPAHACSFKARVT 119
+H T K++LQ YA++ N PLY + E F V
Sbjct: 75 CVSQPVHETG-----------LCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVE 123
Query: 120 IDGHTFESLEFFKNLKQAEHAAAKVALFSLACD 152
I G + + K AE +A + AL ++ D
Sbjct: 124 IGGIKYTGA-ATRTKKDAEISAGRTALLAIQSD 155
>gi|356551805|ref|XP_003544264.1| PREDICTED: uncharacterized protein LOC100798730 [Glycine max]
Length = 434
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 103/219 (47%), Gaps = 32/219 (14%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ + + ++ P+Y +I EG H+ F++ V + + S F + K AEH AA
Sbjct: 2 YKNRLQEFTSKSGINFPVYQTINEGQDHSPKFRSTVWVADMGYTSQSTFSHKKAAEHEAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYET--IKCGA 200
++AL S+ E + L +S F K++++E + + + P Y T + G
Sbjct: 62 RLALESILKRTRDEGLSLVNQIS-------PFSKSIMNEYADKLHVEQPTYNTDQQQLGG 114
Query: 201 PHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTA-------------LIERKLIF 247
+P FI+ + +G + G RTKK+AE AAK A + +I+ K IF
Sbjct: 115 -VLPIFITSLVFNGTSYTGDPARTKKEAEQSAAKAAILSIMGDSSSGTVLVEIIKSKSIF 173
Query: 248 SLPFHG-GRSCSIGSITHTVKADGVPNSTLSSDLDVTLD 285
G GRS S + V ++T + + +TLD
Sbjct: 174 YDAIKGKGRSLS--------QPSAVLSTTNAGQISITLD 204
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 86/185 (46%), Gaps = 20/185 (10%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QE + + P Y T+ +G DH P+F+S+V V + + S + K ++++A
Sbjct: 1 MYKNRLQEFTSKSGINFPVYQTINEGQDHSPKFRSTVWVADMGYTSQSTFSHKKAAEHEA 60
Query: 61 AKLAF-----------LHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPA 109
A+LA L + + KS++ YA + +++ P Y++ ++
Sbjct: 61 ARLALESILKRTRDEGLSLVN-------QISPFSKSIMNEYADKLHVEQPTYNTDQQQLG 113
Query: 110 HACS-FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYL 168
F + +G ++ + + K+AE +AAK A+ S+ D + + S +
Sbjct: 114 GVLPIFITSLVFNGTSYTG-DPARTKKEAEQSAAKAAILSIMGDSSSGTVLVEIIKSKSI 172
Query: 169 WDDGV 173
+ D +
Sbjct: 173 FYDAI 177
>gi|255549597|ref|XP_002515850.1| conserved hypothetical protein [Ricinus communis]
gi|223545005|gb|EEF46519.1| conserved hypothetical protein [Ricinus communis]
Length = 284
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 40/46 (86%)
Query: 320 SYLLCNRVRVYTRIPDIAFPKGITLMPISEDKWVAVSLEFPNEEGN 365
SYLLC RVR+Y P+I FPKGIT++PI+++ WVAV+LEFPNE+G+
Sbjct: 239 SYLLCERVRMYPSYPNIDFPKGITVLPITDNIWVAVNLEFPNEQGH 284
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 29/40 (72%)
Query: 23 MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAK 62
MKDG DH P FKS+V VNGLSF S SSK SQN+AAK
Sbjct: 1 MKDGPDHTPSFKSNVIVNGLSFDSHFPSSSSKLSQNEAAK 40
>gi|357141254|ref|XP_003572154.1| PREDICTED: double-stranded RNA-binding protein 4-like [Brachypodium
distachyon]
Length = 281
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 2/185 (1%)
Query: 80 QCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEH 139
+C YK+ LQ A+R + P+Y + ++G H F++ V + G F S +K AE
Sbjct: 27 KCNYKNRLQELAQRAHQKLPVYLTEKKGDHHQPEFRSTVEVWGDQFSSARTHGRIKDAEQ 86
Query: 140 AAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIK-C 198
AA+VA + + +A + + D +F K++L+E +++ P Y +
Sbjct: 87 DAARVA-YEILVAKIMDADADVTDILGLIDQDVLFCKSILNEFAVKTKATQPKYSVDRPQ 145
Query: 199 GAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLPFHGGRSCS 258
G + F+S V DG+ + G+A +KK AE KAA+ A +++ K + +
Sbjct: 146 GVSPISLFVSSVVFDGKTYTGEAAVSKKDAEQKAARAAVKSILATKNTCMMQIIKSKENL 205
Query: 259 IGSIT 263
I +IT
Sbjct: 206 ITAIT 210
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 16/161 (9%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
YK ++QEL + LP Y T K G H P F+S+V V G F S+ + K+++ DAA
Sbjct: 30 YKNRLQELAQRAHQKLPVYLTEKKGDHHQPEFRSTVEVWGDQFSSARTHGRIKDAEQDAA 89
Query: 62 KLAFLHFTSPPPPPPPNVQ------------CRYKSVLQNYARRKNLDSPLYSSIR-EGP 108
++A+ + +V C KS+L +A + P YS R +G
Sbjct: 90 RVAYEILVAKIMDADADVTDILGLIDQDVLFC--KSILNEFAVKTKATQPKYSVDRPQGV 147
Query: 109 AHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
+ F + V DG T+ E + K AE AA+ A+ S+
Sbjct: 148 SPISLFVSSVVFDGKTYTG-EAAVSKKDAEQKAARAAVKSI 187
>gi|212276238|ref|NP_001130203.1| uncharacterized protein LOC100191297 [Zea mays]
gi|194688536|gb|ACF78352.1| unknown [Zea mays]
gi|414870581|tpg|DAA49138.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
Length = 323
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 13/175 (7%)
Query: 75 PPPNVQCRY--KSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFK 132
PP + +Y K+ LQ++A R +P+Y EG +H F V + F S F
Sbjct: 49 PPSAIPDKYMHKNRLQSFAERTYKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFS 108
Query: 133 NLKQAEHAAAKVA---LFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLP 189
K+AE AA+VA L +++ D +EA L + D VF K++L E +++
Sbjct: 109 RKKEAEQDAARVAYEILTTVSESDVKEAFEL-------IDQDAVFCKSILIEFAVKTKTT 161
Query: 190 VPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER 243
+P Y + C + F ++V DG ++G++ KK AE AA+V +++ +
Sbjct: 162 LPSYSVVCVCLKKPLTLFAAIVVFDGNAYHGESAPNKKDAEQNAARVVIKSILAK 216
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 13/159 (8%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
M+K ++Q + P Y +G H P+F +V V F S+ S KE++ DA
Sbjct: 58 MHKNRLQSFAERTYKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDA 117
Query: 61 AKLAFLHFTSPPPPPPPN---------VQCRYKSVLQNYARRKNLDSPLYSSIREGPAHA 111
A++A+ T+ V C KS+L +A + P YS +
Sbjct: 118 ARVAYEILTTVSESDVKEAFELIDQDAVFC--KSILIEFAVKTKTTLPSYSVVCVCLKKP 175
Query: 112 CS-FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
+ F A V DG+ + E N K AE AA+V + S+
Sbjct: 176 LTLFAAIVVFDGNAYHG-ESAPNKKDAEQNAARVVIKSI 213
>gi|358348579|ref|XP_003638322.1| Ribonuclease, partial [Medicago truncatula]
gi|355504257|gb|AES85460.1| Ribonuclease, partial [Medicago truncatula]
Length = 160
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 46/65 (70%)
Query: 176 KNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKV 235
K++L EL+ R +P Y++ + G PHMPTF S VEV+G F+GKA +KK+AE AAK+
Sbjct: 6 KSLLQELTQRRYCSIPTYKSTRTGPPHMPTFFSTVEVEGVEFHGKASSSKKEAEYDAAKI 65
Query: 236 AYTAL 240
AY AL
Sbjct: 66 AYKAL 70
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 3 KTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAK 62
K+ +QEL ++ S+P Y + + G H P F S+V V G+ FH S S KE++ DAAK
Sbjct: 6 KSLLQELTQRRYCSIPTYKSTRTGPPHMPTFFSTVEVEGVEFHGKASS-SKKEAEYDAAK 64
Query: 63 LAF 65
+A+
Sbjct: 65 IAY 67
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 81 CRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHA 140
C KS+LQ +R+ P Y S R GP H +F + V ++G F + + K+AE+
Sbjct: 3 CASKSLLQELTQRRYCSIPTYKSTRTGPPHMPTFFSTVEVEGVEFHG-KASSSKKEAEYD 61
Query: 141 AAKVALFSL 149
AAK+A +L
Sbjct: 62 AAKIAYKAL 70
>gi|449502333|ref|XP_004161611.1| PREDICTED: uncharacterized LOC101213863 [Cucumis sativus]
Length = 385
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 13/178 (7%)
Query: 70 SPPPPPPPNVQCR-----YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHT 124
+P P P PN+ YK+ L Y ++ + P+Y +I EG +++ V +D
Sbjct: 60 APAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVH 119
Query: 125 FESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSL 184
+ S F+N + AE AA+VA ++ +A L L +D + K++L E +
Sbjct: 120 YVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLL-------LREDLMLCKSILSEYTD 172
Query: 185 REGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE 242
+ GL P+Y T K + F S + DG V+ GRTKK+AE AA+ A +L E
Sbjct: 173 KMGLERPIY-TTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHE 229
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 81/157 (51%), Gaps = 8/157 (5%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
+YK + E + + ++P Y T+ +G+ P+++S+V V+ + + S + ++ + ++ DA
Sbjct: 77 VYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDA 136
Query: 61 AKLAFLHFTSPPPPPPPNVQCRY-----KSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
A++AF + S + R KS+L Y + L+ P+Y++ + F+
Sbjct: 137 ARVAF-EYISKKTKDDAFLLLREDLMLCKSILSEYTDKMGLERPIYTT-KHNQGSVAFFQ 194
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACD 152
+ + DG + S + + K+AE AA+ A+ SL D
Sbjct: 195 STLVFDGVVYTS-DLGRTKKEAEQLAARAAILSLHED 230
>gi|449464150|ref|XP_004149792.1| PREDICTED: uncharacterized protein LOC101213863 [Cucumis sativus]
Length = 385
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 13/178 (7%)
Query: 70 SPPPPPPPNVQCR-----YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHT 124
+P P P PN+ YK+ L Y ++ + P+Y +I EG +++ V +D
Sbjct: 60 APAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVH 119
Query: 125 FESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSL 184
+ S F+N + AE AA+VA ++ +A L L +D + K++L E +
Sbjct: 120 YVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLL-------LREDLMLCKSILSEYTD 172
Query: 185 REGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE 242
+ GL P+Y T K + F S + DG V+ GRTKK+AE AA+ A +L E
Sbjct: 173 KMGLERPIY-TTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHE 229
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 81/157 (51%), Gaps = 8/157 (5%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
+YK + E + + ++P Y T+ +G+ P+++S+V V+ + + S + ++ + ++ DA
Sbjct: 77 VYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDA 136
Query: 61 AKLAFLHFTSPPPPPPPNVQCRY-----KSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
A++AF + S + R KS+L Y + L+ P+Y++ + F+
Sbjct: 137 ARVAF-EYISKKTKDDAFLLLREDLMLCKSILSEYTDKMGLERPIYTT-KHNQGSVAFFQ 194
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACD 152
+ + DG + S + + K+AE AA+ A+ SL D
Sbjct: 195 STLVFDGVVYTS-DLGRTKKEAEQLAARAAILSLHED 230
>gi|194691820|gb|ACF79994.1| unknown [Zea mays]
gi|414870583|tpg|DAA49140.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
gi|414870584|tpg|DAA49141.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
Length = 266
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+ LQ++A R +P+Y EG +H F V + F S F K+AE AA
Sbjct: 2 HKNRLQSFAERTYKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDAA 61
Query: 143 KVA---LFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETI-KC 198
+VA L +++ D +EA L + D VF K++L E +++ +P Y + C
Sbjct: 62 RVAYEILTTVSESDVKEAFEL-------IDQDAVFCKSILIEFAVKTKTTLPSYSVVCVC 114
Query: 199 GAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER 243
+ F ++V DG ++G++ KK AE AA+V +++ +
Sbjct: 115 LKKPLTLFAAIVVFDGNAYHGESAPNKKDAEQNAARVVIKSILAK 159
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 13/159 (8%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
M+K ++Q + P Y +G H P+F +V V F S+ S KE++ DA
Sbjct: 1 MHKNRLQSFAERTYKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDA 60
Query: 61 AKLAFLHFTSPPPPPPPN---------VQCRYKSVLQNYARRKNLDSPLYSSIREGPAHA 111
A++A+ T+ V C KS+L +A + P YS +
Sbjct: 61 ARVAYEILTTVSESDVKEAFELIDQDAVFC--KSILIEFAVKTKTTLPSYSVVCVCLKKP 118
Query: 112 CS-FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
+ F A V DG+ + E N K AE AA+V + S+
Sbjct: 119 LTLFAAIVVFDGNAYHG-ESAPNKKDAEQNAARVVIKSI 156
>gi|224143640|ref|XP_002336063.1| predicted protein [Populus trichocarpa]
gi|222869864|gb|EEF06995.1| predicted protein [Populus trichocarpa]
Length = 155
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK+K+Q +C Q+ W LP Y K G DH+P F ++V+VN SF S SSK +Q+DA
Sbjct: 1 MYKSKLQAVCQQRGWELPTYQVTKQGKDHNPLFSATVTVNATSFSSPSPSSSSKTAQSDA 60
Query: 61 AKLAFLHF 68
AKLAF HF
Sbjct: 61 AKLAFNHF 68
>gi|224143644|ref|XP_002336064.1| predicted protein [Populus trichocarpa]
gi|222869865|gb|EEF06996.1| predicted protein [Populus trichocarpa]
Length = 61
Score = 71.2 bits (173), Expect = 7e-10, Method: Composition-based stats.
Identities = 35/58 (60%), Positives = 41/58 (70%)
Query: 182 LSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTA 239
++ REG +P Y T K G H PTFIS VE+DG +F GK RTKK+AEM AAK AYTA
Sbjct: 1 MAQREGCGLPTYFTEKSGEAHAPTFISTVEIDGVIFTGKEARTKKQAEMSAAKTAYTA 58
>gi|255545984|ref|XP_002514052.1| conserved hypothetical protein [Ricinus communis]
gi|223547138|gb|EEF48635.1| conserved hypothetical protein [Ricinus communis]
Length = 412
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K LQ YA++K L +PLY +I+EGP+H SF++ V ++ ++SL F N K AE +A
Sbjct: 16 FKRRLQEYAQKKGLPTPLYETIKEGPSHEPSFRSTVIVNDIRYDSLPGFLNRKAAEQSAV 75
Query: 143 KVALFSLA-CDDFQEAI 158
+VAL LA CD+ + I
Sbjct: 76 EVALMELAKCDEVNDCI 92
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAG-RTKKKAEMKAA 233
+K L E + ++GLP PLYETIK G H P+F S V V+ + G +K AE A
Sbjct: 16 FKRRLQEYAQKKGLPTPLYETIKEGPSHEPSFRSTVIVNDIRYDSLPGFLNRKAAEQSAV 75
Query: 234 KVAYTALIE 242
+VA L +
Sbjct: 76 EVALMELAK 84
Score = 44.3 bits (103), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K ++QE +K P Y T+K+G H+P F+S+V VN + + S + K ++ A
Sbjct: 15 VFKRRLQEYAQKKGLPTPLYETIKEGPSHEPSFRSTVIVNDIRYDSLPGFLNRKAAEQSA 74
Query: 61 AKLAFLHF 68
++A +
Sbjct: 75 VEVALMEL 82
>gi|414870580|tpg|DAA49137.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]
Length = 334
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 11/159 (6%)
Query: 89 NYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVA--- 145
++A R +P+Y EG +H F V + F S F K+AE AA+VA
Sbjct: 76 SFAERTYKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDAARVAYEI 135
Query: 146 LFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMP 204
L +++ D +EA L + D VF K++L E +++ +P Y + C +
Sbjct: 136 LTTVSESDVKEAFEL-------IDQDAVFCKSILIEFAVKTKTTLPSYSVVCVCLKKPLT 188
Query: 205 TFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER 243
F ++V DG ++G++ KK AE AA+V +++ +
Sbjct: 189 LFAAIVVFDGNAYHGESAPNKKDAEQNAARVVIKSILAK 227
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 13/142 (9%)
Query: 18 PRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPPPPPPP 77
P Y +G H P+F +V V F S+ S KE++ DAA++A+ T+
Sbjct: 86 PIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDAARVAYEILTTVSESDVK 145
Query: 78 N---------VQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACS-FKARVTIDGHTFES 127
V C KS+L +A + P YS + + F A V DG+ +
Sbjct: 146 EAFELIDQDAVFC--KSILIEFAVKTKTTLPSYSVVCVCLKKPLTLFAAIVVFDGNAYHG 203
Query: 128 LEFFKNLKQAEHAAAKVALFSL 149
E N K AE AA+V + S+
Sbjct: 204 -ESAPNKKDAEQNAARVVIKSI 224
>gi|224161117|ref|XP_002338294.1| predicted protein [Populus trichocarpa]
gi|222871751|gb|EEF08882.1| predicted protein [Populus trichocarpa]
Length = 196
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 46/69 (66%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK+ +Q +C Q+ W LP Y K G DH P F ++V+VN SF S SSK++Q++A
Sbjct: 1 MYKSNLQAVCQQRGWELPTYQVTKQGQDHSPLFSATVTVNATSFSSPSPSSSSKKAQSEA 60
Query: 61 AKLAFLHFT 69
AKLA+ HF+
Sbjct: 61 AKLAYDHFS 69
>gi|356569838|ref|XP_003553102.1| PREDICTED: caltractin-like [Glycine max]
Length = 265
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 39/51 (76%)
Query: 196 IKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLI 246
++ G+PHMPTF S VEV+G F+GK GR+KK++E A K+AY AL E +L+
Sbjct: 1 MQAGSPHMPTFFSTVEVEGVEFHGKGGRSKKQSEENATKIAYIALKEYELL 51
>gi|218184757|gb|EEC67184.1| hypothetical protein OsI_34054 [Oryza sativa Indica Group]
Length = 506
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 166 MYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTK 225
+ L D+ YKN+L E++ R G P+P Y T + G H+P F VE+ G F G + K
Sbjct: 71 LGLLDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFTCTVELAGITFTGDPAKNK 130
Query: 226 KKAEMKAAKVAYTALIERKLI 246
K+AE AA A+++L R+L+
Sbjct: 131 KQAEKNAASAAWSSL--RQLV 149
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK++LQ A+R P Y++ R G H F V + G TF + KN KQAE AA
Sbjct: 80 YKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFTCTVELAGITFTG-DPAKNKKQAEKNAA 138
Query: 143 KVALFSLACDDFQEA 157
A SL QEA
Sbjct: 139 SAAWSSLRQLVRQEA 153
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
+YK +QE+ + LP Y+T + G H P F +V + G++F + K+ K+++ +A
Sbjct: 79 VYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFTCTVELAGITF-TGDPAKNKKQAEKNA 137
Query: 61 AKLAF 65
A A+
Sbjct: 138 ASAAW 142
>gi|307776250|pdb|2L2N|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For
The First Dsrbd Of Protein Hyl1
Length = 103
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 45/68 (66%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P+Y ++EGP+H F++ V +DG + SL F N K AE +AA
Sbjct: 19 FKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAA 78
Query: 143 KVALFSLA 150
+VAL LA
Sbjct: 79 EVALRELA 86
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAG-RTKKKAEMKAA 233
+K+ L E + + LP P+YE +K G H F S V +DG + G +K AE AA
Sbjct: 19 FKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAA 78
Query: 234 KVAYTAL 240
+VA L
Sbjct: 79 EVALREL 85
>gi|296863410|pdb|3ADG|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
gi|296863411|pdb|3ADI|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
gi|296863412|pdb|3ADI|B Chain B, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
gi|296863413|pdb|3ADI|C Chain C, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
Length = 73
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 45/68 (66%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P+Y ++EGP+H F++ V +DG + SL F N K AE +AA
Sbjct: 5 FKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAA 64
Query: 143 KVALFSLA 150
+VAL LA
Sbjct: 65 EVALRELA 72
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAG-RTKKKAEMKAA 233
+K+ L E + + LP P+YE +K G H F S V +DG + G +K AE AA
Sbjct: 5 FKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAA 64
Query: 234 KVAYTAL 240
+VA L
Sbjct: 65 EVALREL 71
Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 38/65 (58%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + + P Y +K+G H F+S+V ++G+ ++S + K ++ A
Sbjct: 4 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 63
Query: 61 AKLAF 65
A++A
Sbjct: 64 AEVAL 68
>gi|224159933|ref|XP_002338148.1| predicted protein [Populus trichocarpa]
gi|222871054|gb|EEF08185.1| predicted protein [Populus trichocarpa]
Length = 83
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK+K+Q+L Q+ W +P K+G +H P F ++V+V+ F + + SSKE+QN A
Sbjct: 1 MYKSKLQQLSQQRGWEIPTSEVTKEGQEHSPLFYATVTVDATLFSTPLPSSSSKEAQNAA 60
Query: 61 AKLAFLHF 68
AK A +F
Sbjct: 61 AKQAHNYF 68
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 174 FYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGK-AGRTKKKAEMKA 232
YK+ L +LS + G +P E K G H P F + V VD +F + K+A+ A
Sbjct: 1 MYKSKLQQLSQQRGWEIPTSEVTKEGQEHSPLFYATVTVDATLFSTPLPSSSSKEAQNAA 60
Query: 233 AKVAY 237
AK A+
Sbjct: 61 AKQAH 65
Score = 37.7 bits (86), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YKS LQ ++++ + P +EG H+ F A VT+D F + + K+A++AAA
Sbjct: 2 YKSKLQQLSQQRGWEIPTSEVTKEGQEHSPLFYATVTVDATLFSTPLPSSSSKEAQNAAA 61
Query: 143 KVA 145
K A
Sbjct: 62 KQA 64
>gi|222615377|gb|EEE51509.1| hypothetical protein OsJ_32675 [Oryza sativa Japonica Group]
Length = 830
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P Y + +EGP+H FK+ V I+ +++SL F N K AE +AA
Sbjct: 34 FKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAA 93
Query: 143 KVALFSL 149
+VAL +
Sbjct: 94 EVALMEI 100
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + P Y T K+G H+P FKS+V +N S+ S + K ++ A
Sbjct: 33 VFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 61 AKLAFLHFTSPPP 73
A++A + P
Sbjct: 93 AEVALMEIVKSIP 105
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 174 FYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
KN+L E + + +P Y K + P FI VE+ G + G A RTKK AE+KAA
Sbjct: 475 LCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVEIGGIQYIGAAARTKKDAEIKAA 533
Query: 234 KVAYTAL 240
+ A A+
Sbjct: 534 RTALLAI 540
>gi|356577458|ref|XP_003556842.1| PREDICTED: probable sugar phosphate/phosphate translocator
At5g05820-like [Glycine max]
Length = 293
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 44/67 (65%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+S++EGP HA FKA V +G F++ + L+QAEH+AA
Sbjct: 2 YKNQLQELAQRSCFNLPSYTSLQEGPDHAPRFKAIVNFNGKIFKTPHYCSTLRQAEHSAA 61
Query: 143 KVALFSL 149
+V L SL
Sbjct: 62 EVTLNSL 68
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 46/73 (63%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y+++++G DH PRFK+ V+ NG F + C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTSLQEGPDHAPRFKAIVNFNGKIFKTPHYCSTLRQAEHSA 60
Query: 61 AKLAFLHFTSPPP 73
A++ T P
Sbjct: 61 AEVTLNSLTHRGP 73
Score = 40.8 bits (94), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYG-KAGRTKKKAEMKAA 233
YKN L EL+ R +P Y +++ G H P F ++V +G++F T ++AE AA
Sbjct: 2 YKNQLQELAQRSCFNLPSYTSLQEGPDHAPRFKAIVNFNGKIFKTPHYCSTLRQAEHSAA 61
Query: 234 KVAYTALIER 243
+V +L R
Sbjct: 62 EVTLNSLTHR 71
>gi|222616496|gb|EEE52628.1| hypothetical protein OsJ_34969 [Oryza sativa Japonica Group]
Length = 781
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P Y + +EGP+H FK+ V I+ +++SL F N K AE +AA
Sbjct: 34 FKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAA 93
Query: 143 KVALFSL 149
+VAL +
Sbjct: 94 EVALMEI 100
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + P Y T K+G H+P FKS+V +N S+ S + K ++ A
Sbjct: 33 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 61 AKLAFLHFTSPPP 73
A++A + P
Sbjct: 93 AEVALMEIVKSIP 105
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 176 KNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKV 235
KN+L E + + +P Y K + P FI VE+ G + G A RTKK AE+KAA+
Sbjct: 477 KNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVEIGGIQYIGAAARTKKDAEIKAART 535
Query: 236 AYTAL 240
A A+
Sbjct: 536 ALLAI 540
>gi|357501287|ref|XP_003620932.1| hypothetical protein MTR_6g092600 [Medicago truncatula]
gi|355495947|gb|AES77150.1| hypothetical protein MTR_6g092600 [Medicago truncatula]
Length = 75
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 39/68 (57%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MY K+QELC + + LP Y T +G H+P F S+V+V +SF S + K SQ
Sbjct: 1 MYTNKLQELCQKNSYPLPEYQTTHEGPLHNPLFSSTVTVKSISFTSPEPASTLKASQEFV 60
Query: 61 AKLAFLHF 68
A +AF HF
Sbjct: 61 AMVAFHHF 68
>gi|218186287|gb|EEC68714.1| hypothetical protein OsI_37196 [Oryza sativa Indica Group]
Length = 2010
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P Y + +EGP+H FK+ V I+ +++SL F N K AE +AA
Sbjct: 1269 FKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAA 1328
Query: 143 KVALFSL 149
+VAL +
Sbjct: 1329 EVALMEI 1335
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + P Y T K+G H+P FKS+V +N S+ S + K ++ A
Sbjct: 1268 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 1327
Query: 61 AKLAFLHFTSPPP 73
A++A + P
Sbjct: 1328 AEVALMEIVKSIP 1340
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 176 KNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKV 235
KN+L E + + +P Y K + P FI VE+ G + G A RTKK AE+KAA+
Sbjct: 1706 KNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVEIGGIQYIGAAARTKKDAEIKAART 1764
Query: 236 AYTAL 240
A A+
Sbjct: 1765 ALLAI 1769
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAG-RTKKKAEMKAA 233
+K+ L E + + GL P Y T K G H P F S V ++ + G +K AE AA
Sbjct: 1269 FKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAA 1328
Query: 234 KVAYTALIE 242
+VA +++
Sbjct: 1329 EVALMEIVK 1337
>gi|357515751|ref|XP_003628164.1| DsRNA-binding protein [Medicago truncatula]
gi|355522186|gb|AET02640.1| DsRNA-binding protein [Medicago truncatula]
Length = 96
Score = 60.5 bits (145), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/56 (50%), Positives = 37/56 (66%)
Query: 191 PLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLI 246
P+Y T K G H P F S VE+ GE+F G+ ++KK AEM AAKVAY L ++K +
Sbjct: 41 PVYSTNKSGEAHKPIFSSQVEIKGEIFTGQEAKSKKHAEMSAAKVAYKFLDQKKRV 96
>gi|218186280|gb|EEC68707.1| hypothetical protein OsI_37189 [Oryza sativa Indica Group]
Length = 474
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P Y + +EGP+H FK+ V I+ +++SL F N K AE +AA
Sbjct: 34 FKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAA 93
Query: 143 KVALFSL 149
+VAL +
Sbjct: 94 EVALMEI 100
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + P Y T K+G H+P FKS+V +N S+ S + K ++ A
Sbjct: 33 VFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 61 AKLAFLHFTSPPP 73
A++A + P
Sbjct: 93 AEVALMEIVKSIP 105
>gi|357492171|ref|XP_003616374.1| hypothetical protein MTR_5g079490 [Medicago truncatula]
gi|355517709|gb|AES99332.1| hypothetical protein MTR_5g079490 [Medicago truncatula]
Length = 357
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 11/171 (6%)
Query: 71 PPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEF 130
PP PP + +K+ L +A + N+ P + S EG A ++++ V +DG F S
Sbjct: 19 PPQLPPVPM---FKNNLIQFALKSNMKHPEFFSRNEGSIQAPAYRSSVMVDGLVFTSQLT 75
Query: 131 FKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPV 190
F + K AE A+ AL L EA + + F K VL+E + + + +
Sbjct: 76 FFHRKAAEQEVARFALEYLTKKVKDEAYSIMSEAV-------TFCKTVLNEYASKLSIQL 128
Query: 191 PLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALI 241
P Y++++ +P F+ ++++G + G A R KK A AA+ A +++
Sbjct: 129 PTYKSVEYKE-VIPYFVCTLDLNGTSYTGDAARRKKDAVELAARAAILSIL 178
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 69/156 (44%), Gaps = 12/156 (7%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
M+K + + + P + + +G+ P ++SSV V+GL F S ++ K ++ +
Sbjct: 27 MFKNNLIQFALKSNMKHPEFFSRNEGSIQAPAYRSSVMVDGLVFTSQLTFFHRKAAEQEV 86
Query: 61 AKLAFLHFTSPPPPPPPNVQCRY----KSVLQNYARRKNLDSPLYSSIREG---PAHACS 113
A+ A + T ++ K+VL YA + ++ P Y S+ P C+
Sbjct: 87 ARFALEYLTKKVKDEAYSIMSEAVTFCKTVLNEYASKLSIQLPTYKSVEYKEVIPYFVCT 146
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
++G ++ + + K A AA+ A+ S+
Sbjct: 147 LD----LNGTSYTG-DAARRKKDAVELAARAAILSI 177
>gi|222631053|gb|EEE63185.1| hypothetical protein OsJ_17994 [Oryza sativa Japonica Group]
Length = 787
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P Y + +EGP+H FK+ V I+ ++ SL F N K AE +AA
Sbjct: 36 FKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSAA 95
Query: 143 KVALFSL 149
+VAL +
Sbjct: 96 EVALMEI 102
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + P Y T K+G H+P FKS+V +N S+ S + K ++ A
Sbjct: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94
Query: 61 AKLAFLHFTSPPP 73
A++A + P
Sbjct: 95 AEVALMEIVKSIP 107
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 174 FYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
KN+L E + + +P Y K + P F+ VE+ G + G A RTKK AE+KAA
Sbjct: 470 LCKNLLQEYAQKMNYAIPSYICTKPASGLAP-FLCTVEIGGIQYIGAAARTKKDAEIKAA 528
Query: 234 KVAYTAL 240
+ A A+
Sbjct: 529 RTALLAI 535
>gi|125551761|gb|EAY97470.1| hypothetical protein OsI_19399 [Oryza sativa Indica Group]
Length = 787
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P Y + +EGP+H FK+ V I+ ++ SL F N K AE +AA
Sbjct: 36 FKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSAA 95
Query: 143 KVALFSL 149
+VAL +
Sbjct: 96 EVALMEI 102
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + P Y T K+G H+P FKS+V +N S+ S + K ++ A
Sbjct: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94
Query: 61 AKLAFLHFTSPPP 73
A++A + P
Sbjct: 95 AEVALMEIVKSIP 107
Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 174 FYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
KN+L E + + +P Y K + P FI VE+ G + G A RTKK AE+KAA
Sbjct: 470 LCKNLLQEYAQKMNYAIPSYICTKPASGLAP-FICTVEIGGIQYIGAAARTKKDAEIKAA 528
Query: 234 KVAYTAL 240
+ A A+
Sbjct: 529 RTALLAI 535
>gi|356569842|ref|XP_003553104.1| PREDICTED: probable calcium-binding protein CML20-like [Glycine
max]
Length = 239
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 27/34 (79%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFK 34
MYK K+QELCHQ++W LPR+ MKDG DH P FK
Sbjct: 1 MYKAKLQELCHQRKWGLPRHFAMKDGPDHIPSFK 34
>gi|357501283|ref|XP_003620930.1| DsRNA-binding protein [Medicago truncatula]
gi|355495945|gb|AES77148.1| DsRNA-binding protein [Medicago truncatula]
Length = 105
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%)
Query: 3 KTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAK 62
K K+QELC + + LP+Y T +G H+P F S+V+V +SF S + K SQ AA
Sbjct: 33 KQKLQELCQKNSYPLPKYQTTHEGPLHNPLFSSTVTVKSISFTSPKPASTLKASQEFAAM 92
Query: 63 LAFLHF 68
+AF HF
Sbjct: 93 VAFHHF 98
>gi|125603259|gb|EAZ42584.1| hypothetical protein OsJ_27148 [Oryza sativa Japonica Group]
Length = 125
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 67 HFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFE 126
H +P PPP+ C YKS LQ Y ++ N P+Y + +G H FK+ V +DG F
Sbjct: 25 HSPAPLHTPPPH--CNYKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFS 82
Query: 127 SLEFFKNLKQAEHAAAKVALFSL 149
S + +K AE AAKVA +L
Sbjct: 83 STFCHRRVKDAEQDAAKVAYDTL 105
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
YK+K+QE Q LP Y T G H +FKS+V V+G F S+ + K+++ DAA
Sbjct: 39 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAA 98
Query: 62 KLAF 65
K+A+
Sbjct: 99 KVAY 102
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGK-AGRTKKKAEMKAA 233
YK+ L E + +P+Y T G H F S V VDGE F R K AE AA
Sbjct: 39 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAA 98
Query: 234 KVAYTALIERK 244
KVAY L+ERK
Sbjct: 99 KVAYDTLLERK 109
>gi|312140459|ref|YP_004007795.1| ribonuclease iii [Rhodococcus equi 103S]
gi|325675924|ref|ZP_08155607.1| ribonuclease III [Rhodococcus equi ATCC 33707]
gi|311889798|emb|CBH49115.1| ribonuclease III [Rhodococcus equi 103S]
gi|325553162|gb|EGD22841.1| ribonuclease III [Rhodococcus equi ATCC 33707]
Length = 256
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 42/79 (53%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ G+ VP YE G H F + V V G+ F GR+KK+AE K
Sbjct: 171 GLDWKTSLQELTAERGIGVPSYEITATGPDHDKEFTATVVVGGDAFGVGVGRSKKEAEQK 230
Query: 232 AAKVAYTALIERKLIFSLP 250
AA A++AL E LP
Sbjct: 231 AASTAWSALSEAAQSVVLP 249
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL ++ +P Y G DHD F ++V V G +F V +S KE++ AA
Sbjct: 174 WKTSLQELTAERGIGVPSYEITATGPDHDKEFTATVVVGGDAFGVGVG-RSKKEAEQKAA 232
Query: 62 KLAF 65
A+
Sbjct: 233 STAW 236
>gi|363420255|ref|ZP_09308349.1| ribonuclease III [Rhodococcus pyridinivorans AK37]
gi|359736051|gb|EHK85002.1| ribonuclease III [Rhodococcus pyridinivorans AK37]
Length = 267
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 37/71 (52%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ GL VP YE G H F + + G + GRTKK+AE K
Sbjct: 171 GLDWKTSLQELTAERGLGVPAYEITATGPDHDKEFTATALIGGNPYGTGVGRTKKEAEQK 230
Query: 232 AAKVAYTALIE 242
AA A+ AL E
Sbjct: 231 AASAAWNALTE 241
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL ++ +P Y G DHD F ++ + G + + V ++ KE++ AA
Sbjct: 174 WKTSLQELTAERGLGVPAYEITATGPDHDKEFTATALIGGNPYGTGVG-RTKKEAEQKAA 232
Query: 62 KLAFLHFT 69
A+ T
Sbjct: 233 SAAWNALT 240
>gi|242069683|ref|XP_002450118.1| hypothetical protein SORBIDRAFT_05g000800 [Sorghum bicolor]
gi|241935961|gb|EES09106.1| hypothetical protein SORBIDRAFT_05g000800 [Sorghum bicolor]
Length = 118
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ + + Y +++EGP+H FK+ V ++ +ESL F + K AE +AA
Sbjct: 33 FKSRLQEYAQKVGITTLEYHTLKEGPSHEPVFKSTVVVNNTRYESLPGFFSRKAAEQSAA 92
Query: 143 KVALFSLACDD 153
+VAL +A +
Sbjct: 93 EVALMEIAMSE 103
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + + Y T+K+G H+P FKS+V VN + S S K ++ A
Sbjct: 32 VFKSRLQEYAQKVGITTLEYHTLKEGPSHEPVFKSTVVVNNTRYESLPGFFSRKAAEQSA 91
Query: 61 AKLAFLHF 68
A++A +
Sbjct: 92 AEVALMEI 99
>gi|407647467|ref|YP_006811226.1| ribonuclease III [Nocardia brasiliensis ATCC 700358]
gi|407310351|gb|AFU04252.1| ribonuclease III [Nocardia brasiliensis ATCC 700358]
Length = 237
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ GL VP YE G H F + + G+ + GR+KK+AE K
Sbjct: 165 GLDWKTSLQELTAERGLGVPSYEITSTGPDHDKEFTATTMIGGQAYGQGVGRSKKEAEQK 224
Query: 232 AAKVAYTAL 240
AA AY AL
Sbjct: 225 AAGTAYQAL 233
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL ++ +P Y G DHD F ++ + G ++ V +S KE++ AA
Sbjct: 168 WKTSLQELTAERGLGVPSYEITSTGPDHDKEFTATTMIGGQAYGQGVG-RSKKEAEQKAA 226
Query: 62 KLAFLHFTS 70
A+ T+
Sbjct: 227 GTAYQALTA 235
>gi|403721061|ref|ZP_10944286.1| ribonuclease III [Gordonia rhizosphera NBRC 16068]
gi|403207401|dbj|GAB88617.1| ribonuclease III [Gordonia rhizosphera NBRC 16068]
Length = 244
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 138 EHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIK 197
EH A+ L F E I H+ G+ +K L ELS G P Y+
Sbjct: 142 EHGLAECKTVILGL--FDEIIGRAGHLGA-----GLDWKTSLQELSAEGGYGPPHYQITS 194
Query: 198 CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER 243
G H F ++ V GE GRTKK+AE KAA +A+ AL ER
Sbjct: 195 TGPDHNKEFTAVAVVAGESLGQGTGRTKKEAEQKAAALAWQALTER 240
>gi|379710093|ref|YP_005265298.1| RNase III [Nocardia cyriacigeorgica GUH-2]
gi|374847592|emb|CCF64662.1| RNase III [Nocardia cyriacigeorgica GUH-2]
Length = 240
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ GL VP YE G H F + + G+ + GR+KK+AE K
Sbjct: 168 GLDWKTSLQELTAERGLGVPSYEITSTGPDHDKEFTATTVIGGQAYGQGVGRSKKEAEQK 227
Query: 232 AAKVAYTAL 240
AA AY AL
Sbjct: 228 AAGAAYQAL 236
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL ++ +P Y G DHD F ++ + G ++ V +S KE++ AA
Sbjct: 171 WKTSLQELTAERGLGVPSYEITSTGPDHDKEFTATTVIGGQAYGQGVG-RSKKEAEQKAA 229
Query: 62 KLAFLHFTS 70
A+ T+
Sbjct: 230 GAAYQALTA 238
>gi|449672502|ref|XP_002169974.2| PREDICTED: uncharacterized protein LOC100206939 [Hydra
magnipapillata]
Length = 437
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 74/174 (42%), Gaps = 30/174 (17%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
YK +QE C + R P Y + G + +V+ N H +V+ + KE++N+AA
Sbjct: 144 YKNSLQEYCQKSRLPTPSYKVVLSGPG---MYIGNVTFNNTLVHGTVAYRIIKEAENNAA 200
Query: 62 -----KLAFLHFTSPPPP------------------PPPNVQCRYKSVLQNYARRKNLDS 98
+L +LH S P P P + +KS L A++++L +
Sbjct: 201 FEALKQLGYLHENSIYIPIAGVKRSNDTQDPWYSKKPKPALCSSFKSKLNELAQKRHLGT 260
Query: 99 PLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACD 152
P Y +I A + + V +G F+ + K AE AA VA L+ D
Sbjct: 261 PTYQTIYS----AGGYLSTVVFNGREFKGMSPCMKKKDAEQNAAFVAYNVLSND 310
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 80/188 (42%), Gaps = 38/188 (20%)
Query: 75 PPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNL 134
P N C YK+ LQ Y ++ L +P Y + GP + VT + ++ +
Sbjct: 136 PGTNKFCSYKNSLQEYCQKSRLPTPSYKVVLSGPGM---YIGNVTFNNTLVHGTVAYRII 192
Query: 135 KQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGV--------------------- 173
K+AE+ AA AL L +L+ + S+Y+ GV
Sbjct: 193 KEAENNAAFEALKQLG--------YLHEN-SIYIPIAGVKRSNDTQDPWYSKKPKPALCS 243
Query: 174 FYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKK-AEMKA 232
+K+ L+EL+ + L P Y+TI ++S V +G F G + KKK AE A
Sbjct: 244 SFKSKLNELAQKRHLGTPTYQTIYSAG----GYLSTVVFNGREFKGMSPCMKKKDAEQNA 299
Query: 233 AKVAYTAL 240
A VAY L
Sbjct: 300 AFVAYNVL 307
>gi|54026155|ref|YP_120397.1| ribonuclease III [Nocardia farcinica IFM 10152]
gi|81373706|sp|Q5YS08.1|RNC_NOCFA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|54017663|dbj|BAD59033.1| putative RNase III [Nocardia farcinica IFM 10152]
Length = 240
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 36/69 (52%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ GL VP YE G H F + + G + GR+KK+AE K
Sbjct: 168 GLDWKTSLQELTAERGLGVPSYEISSTGPDHDKEFTATTVIGGRAYGQGVGRSKKEAEQK 227
Query: 232 AAKVAYTAL 240
AA AY AL
Sbjct: 228 AAGAAYQAL 236
Score = 44.7 bits (104), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL ++ +P Y G DHD F ++ + G ++ V +S KE++ AA
Sbjct: 171 WKTSLQELTAERGLGVPSYEISSTGPDHDKEFTATTVIGGRAYGQGVG-RSKKEAEQKAA 229
Query: 62 KLAFLHFTS 70
A+ T+
Sbjct: 230 GAAYQALTA 238
>gi|238063283|ref|ZP_04607992.1| ribonuclease III [Micromonospora sp. ATCC 39149]
gi|237885094|gb|EEP73922.1| ribonuclease III [Micromonospora sp. ATCC 39149]
Length = 296
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
+K L EL+ GL VP Y G H+ TF + V V G + G GR+KK+AE +AA+
Sbjct: 168 WKTSLQELTAALGLGVPEYRIEGTGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAE 227
Query: 235 VAYTALIER 243
A+ L E+
Sbjct: 228 SAWRELTEQ 236
>gi|443623856|ref|ZP_21108344.1| putative Ribonuclease 3 [Streptomyces viridochromogenes Tue57]
gi|443342637|gb|ELS56791.1| putative Ribonuclease 3 [Streptomyces viridochromogenes Tue57]
Length = 273
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 178 GLDWKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 237
Query: 232 AAKVAYTAL 240
AA+ A+ A+
Sbjct: 238 AAESAWRAI 246
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 181 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 239
Query: 62 KLAF 65
+ A+
Sbjct: 240 ESAW 243
>gi|269127639|ref|YP_003301009.1| ribonuclease III [Thermomonospora curvata DSM 43183]
gi|268312597|gb|ACY98971.1| ribonuclease III [Thermomonospora curvata DSM 43183]
Length = 268
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ E L VP Y + G H TF + V V G + GR+KK+AE +
Sbjct: 177 GLDWKTSLQELTAEEELGVPEYHVAESGPDHQKTFRATVRVGGVTYGSGEGRSKKEAEQR 236
Query: 232 AAKVAYTALIERKLIFSLPFHGGRS 256
AA+ + A+ E S GG+S
Sbjct: 237 AAEATWHAIKE----MSAKRKGGKS 257
Score = 44.3 bits (103), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL ++ +P Y + G DH F+++V V G+++ S +S KE++ AA
Sbjct: 180 WKTSLQELTAEEELGVPEYHVAESGPDHQKTFRATVRVGGVTYGSG-EGRSKKEAEQRAA 238
Query: 62 K 62
+
Sbjct: 239 E 239
>gi|453078061|ref|ZP_21980795.1| ribonuclease III [Rhodococcus triatomae BKS 15-14]
gi|452757696|gb|EME16098.1| ribonuclease III [Rhodococcus triatomae BKS 15-14]
Length = 231
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 37/71 (52%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ G VP+YE G H F + V V G F GRTKK+AE K
Sbjct: 135 GLDWKTSLQELTAERGAGVPVYEITSTGPDHDKEFTATVLVAGAPFGVGVGRTKKEAEQK 194
Query: 232 AAKVAYTALIE 242
AA A+ L +
Sbjct: 195 AASSAWQTLTD 205
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL ++ +P Y G DHD F ++V V G F V ++ KE++ AA
Sbjct: 138 WKTSLQELTAERGAGVPVYEITSTGPDHDKEFTATVLVAGAPFGVGVG-RTKKEAEQKAA 196
Query: 62 KLAFLHFT 69
A+ T
Sbjct: 197 SSAWQTLT 204
>gi|29829207|ref|NP_823841.1| ribonuclease III [Streptomyces avermitilis MA-4680]
gi|81719920|sp|Q82JT9.1|RNC_STRAW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|29606313|dbj|BAC70376.1| putative ribonuclease III [Streptomyces avermitilis MA-4680]
Length = 276
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 172 GLDWKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 231
Query: 232 AAKVAYTAL 240
AA+ A+ A+
Sbjct: 232 AAESAWRAI 240
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 175 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 233
Query: 62 KLAF 65
+ A+
Sbjct: 234 ESAW 237
>gi|290957120|ref|YP_003488302.1| ribonuclease III [Streptomyces scabiei 87.22]
gi|260646646|emb|CBG69743.1| putative ribonuclease III [Streptomyces scabiei 87.22]
Length = 272
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 172 GLDWKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 231
Query: 232 AAKVAYTAL 240
AA+ A+ A+
Sbjct: 232 AAESAWRAI 240
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 175 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 233
Query: 62 KLAF 65
+ A+
Sbjct: 234 ESAW 237
>gi|294631623|ref|ZP_06710183.1| ribonuclease III [Streptomyces sp. e14]
gi|292834956|gb|EFF93305.1| ribonuclease III [Streptomyces sp. e14]
Length = 275
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 180 GLDWKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 239
Query: 232 AAKVAYTAL 240
AA+ A+ A+
Sbjct: 240 AAESAWRAI 248
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 183 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 241
Query: 62 KLAF 65
+ A+
Sbjct: 242 ESAW 245
>gi|421739406|ref|ZP_16177716.1| ribonuclease III [Streptomyces sp. SM8]
gi|406692179|gb|EKC95890.1| ribonuclease III [Streptomyces sp. SM8]
Length = 260
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 168 GLDWKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 227
Query: 232 AAKVAYTAL 240
AA+ A+ A+
Sbjct: 228 AAESAWRAI 236
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 171 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 229
Query: 62 KLAF 65
+ A+
Sbjct: 230 ESAW 233
>gi|359148735|ref|ZP_09181842.1| ribonuclease III [Streptomyces sp. S4]
Length = 260
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 168 GLDWKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 227
Query: 232 AAKVAYTAL 240
AA+ A+ A+
Sbjct: 228 AAESAWRAI 236
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 171 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 229
Query: 62 KLAF 65
+ A+
Sbjct: 230 ESAW 233
>gi|456388603|gb|EMF54043.1| rnc protein [Streptomyces bottropensis ATCC 25435]
Length = 271
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 172 GLDWKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 231
Query: 232 AAKVAYTAL 240
AA+ A+ A+
Sbjct: 232 AAESAWRAI 240
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 175 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 233
Query: 62 KLAF 65
+ A+
Sbjct: 234 ESAW 237
>gi|377564338|ref|ZP_09793660.1| ribonuclease III [Gordonia sputi NBRC 100414]
gi|377528520|dbj|GAB38825.1| ribonuclease III [Gordonia sputi NBRC 100414]
Length = 261
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 38/75 (50%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ G P Y+ G H F + + GE GRTKK+AE K
Sbjct: 184 GLDWKTSLQELAAERGYGPPQYQISSTGPDHSKEFTARAVIAGEELGEGVGRTKKEAEQK 243
Query: 232 AAKVAYTALIERKLI 246
AA +A+ AL ER +
Sbjct: 244 AASLAWQALTERDAV 258
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL ++ + P+Y G DH F + + G V ++ KE++ AA
Sbjct: 187 WKTSLQELAAERGYGPPQYQISSTGPDHSKEFTARAVIAGEELGEGVG-RTKKEAEQKAA 245
Query: 62 KLAFLHFT 69
LA+ T
Sbjct: 246 SLAWQALT 253
>gi|291454392|ref|ZP_06593782.1| ribonuclease III [Streptomyces albus J1074]
gi|291357341|gb|EFE84243.1| ribonuclease III [Streptomyces albus J1074]
Length = 265
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 173 GLDWKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 232
Query: 232 AAKVAYTAL 240
AA+ A+ A+
Sbjct: 233 AAESAWRAI 241
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 176 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 234
Query: 62 KLAF 65
+ A+
Sbjct: 235 ESAW 238
>gi|395771774|ref|ZP_10452289.1| ribonuclease III [Streptomyces acidiscabies 84-104]
Length = 263
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 167 GLDWKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 226
Query: 232 AAKVAYTAL 240
AA+ A+ A+
Sbjct: 227 AAESAWRAI 235
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 228
Query: 62 KLAF 65
+ A+
Sbjct: 229 ESAW 232
>gi|429197323|ref|ZP_19189225.1| ribonuclease III [Streptomyces ipomoeae 91-03]
gi|428666991|gb|EKX66112.1| ribonuclease III [Streptomyces ipomoeae 91-03]
Length = 275
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 167 GLDWKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 226
Query: 232 AAKVAYTAL 240
AA+ A+ A+
Sbjct: 227 AAESAWRAI 235
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 228
Query: 62 KLAF 65
+ A+
Sbjct: 229 ESAW 232
>gi|453053100|gb|EMF00570.1| ribonuclease III [Streptomyces mobaraensis NBRC 13819 = DSM 40847]
Length = 275
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 135 GLDWKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVEYGTGTGRSKKEAEQQ 194
Query: 232 AAKVAYTAL 240
AA+ A+ A+
Sbjct: 195 AAESAWRAI 203
Score = 41.2 bits (95), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+ + + + +S KE++ AA
Sbjct: 138 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVEYGTG-TGRSKKEAEQQAA 196
Query: 62 KLAF 65
+ A+
Sbjct: 197 ESAW 200
>gi|296393287|ref|YP_003658171.1| ribonuclease III [Segniliparus rotundus DSM 44985]
gi|296180434|gb|ADG97340.1| ribonuclease III [Segniliparus rotundus DSM 44985]
Length = 338
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL R GL P+YE + G H F ++V ++ + +GRTKK+AEMK
Sbjct: 258 GLDWKTSLQELCARRGLRPPVYEVTEAGPDHEKLFTAVVLIEEKSLGTGSGRTKKEAEMK 317
Query: 232 AAKVAYTAL 240
AA A+ +
Sbjct: 318 AAGHAWGVI 326
>gi|432336959|ref|ZP_19588421.1| ribonuclease III [Rhodococcus wratislaviensis IFP 2016]
gi|430776123|gb|ELB91584.1| ribonuclease III [Rhodococcus wratislaviensis IFP 2016]
Length = 252
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ G+ VP YE G H F + V V G+ GR+KK+AE K
Sbjct: 170 GLDWKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQK 229
Query: 232 AAKVAYTAL 240
AA A+ AL
Sbjct: 230 AASTAWNAL 238
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL ++ +P Y G DHD F ++V V G + +S KE++ AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIG-RSKKEAEQKAA 231
Query: 62 KLAFLHFTSPPP 73
A+ + P
Sbjct: 232 STAWNALSDAGP 243
>gi|403510495|ref|YP_006642133.1| ribonuclease III [Nocardiopsis alba ATCC BAA-2165]
gi|402803356|gb|AFR10766.1| ribonuclease III [Nocardiopsis alba ATCC BAA-2165]
Length = 267
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ E L VP Y + G H TF + V V GE + GR+KK+AE +
Sbjct: 161 GLDWKTSLQELTAAEMLGVPEYHVDESGPDHQKTFRATVRVAGESYGLGEGRSKKEAEQQ 220
Query: 232 AAKVAYTALIER 243
AA+ A+ A+ R
Sbjct: 221 AAESAWKAIRAR 232
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH F+++V V G S+ +S KE++ AA
Sbjct: 164 WKTSLQELTAAEMLGVPEYHVDESGPDHQKTFRATVRVAGESYGLG-EGRSKKEAEQQAA 222
Query: 62 KLAF 65
+ A+
Sbjct: 223 ESAW 226
>gi|384101471|ref|ZP_10002510.1| ribonuclease III [Rhodococcus imtechensis RKJ300]
gi|383841025|gb|EID80320.1| ribonuclease III [Rhodococcus imtechensis RKJ300]
Length = 252
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ G+ VP YE G H F + V V G+ GR+KK+AE K
Sbjct: 170 GLDWKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQK 229
Query: 232 AAKVAYTAL 240
AA A+ AL
Sbjct: 230 AASTAWNAL 238
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL ++ +P Y G DHD F ++V V G + +S KE++ AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIG-RSKKEAEQKAA 231
Query: 62 KLAFLHFTSPPP 73
A+ + P
Sbjct: 232 STAWNALSDAGP 243
>gi|111023481|ref|YP_706453.1| ribonuclease III [Rhodococcus jostii RHA1]
gi|397736918|ref|ZP_10503594.1| ribonuclease III [Rhodococcus sp. JVH1]
gi|110823011|gb|ABG98295.1| ribonuclease III [Rhodococcus jostii RHA1]
gi|396927202|gb|EJI94435.1| ribonuclease III [Rhodococcus sp. JVH1]
Length = 252
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ G+ VP YE G H F + V V G+ GR+KK+AE K
Sbjct: 170 GLDWKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQK 229
Query: 232 AAKVAYTAL 240
AA A+ AL
Sbjct: 230 AASTAWNAL 238
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL ++ +P Y G DHD F ++V V G + +S KE++ AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIG-RSKKEAEQKAA 231
Query: 62 KLAFLHFTSPPP 73
A+ + P
Sbjct: 232 STAWNALSDAGP 243
>gi|317506412|ref|ZP_07964217.1| ribonuclease III [Segniliparus rugosus ATCC BAA-974]
gi|316255292|gb|EFV14557.1| ribonuclease III [Segniliparus rugosus ATCC BAA-974]
Length = 347
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL R GL P+YE + G H F ++V ++ + +GRTKK+AEMK
Sbjct: 267 GLDWKTSLQELCARRGLRPPVYEVAEAGPDHEKLFTAVVLIEEKSLGTGSGRTKKEAEMK 326
Query: 232 AAKVAYTAL 240
AA A+ +
Sbjct: 327 AAGHAWGVI 335
>gi|351724731|ref|NP_001235276.1| uncharacterized protein LOC100306453 [Glycine max]
gi|255628583|gb|ACU14636.1| unknown [Glycine max]
Length = 162
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 29/40 (72%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDG 122
YK+ LQ+Y ++ NL P+YSS EGP HA FK +VT+DG
Sbjct: 120 YKNQLQSYVQKNNLSLPVYSSEWEGPPHAMRFKCKVTVDG 159
>gi|333920821|ref|YP_004494402.1| ribonuclease III [Amycolicicoccus subflavus DQS3-9A1]
gi|333483042|gb|AEF41602.1| Ribonuclease III [Amycolicicoccus subflavus DQS3-9A1]
Length = 283
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 36/69 (52%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ GL VP YE G H F + V V GE GRTKK+AE K
Sbjct: 211 GLDWKTSLQELTAERGLGVPAYEVAAKGPDHDKEFTATVIVAGEDLGSGTGRTKKEAEQK 270
Query: 232 AAKVAYTAL 240
AA A+ L
Sbjct: 271 AAGAAWRHL 279
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL ++ +P Y G DHD F ++V V G S ++ KE++ AA
Sbjct: 214 WKTSLQELTAERGLGVPAYEVAAKGPDHDKEFTATVIVAGEDLGSGTG-RTKKEAEQKAA 272
Query: 62 KLAFLHFTS 70
A+ H +S
Sbjct: 273 GAAWRHLSS 281
>gi|419964641|ref|ZP_14480595.1| ribonuclease III [Rhodococcus opacus M213]
gi|414570036|gb|EKT80775.1| ribonuclease III [Rhodococcus opacus M213]
Length = 252
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ G+ VP YE G H F + V V G+ GR+KK+AE K
Sbjct: 170 GLDWKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQK 229
Query: 232 AAKVAYTAL 240
AA A+ AL
Sbjct: 230 AASTAWNAL 238
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL ++ +P Y G DHD F ++V V G + +S KE++ AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIG-RSKKEAEQKAA 231
Query: 62 KLAFLHFTSPPP 73
A+ + P
Sbjct: 232 STAWNALSDAGP 243
>gi|386842771|ref|YP_006247829.1| ribonuclease III [Streptomyces hygroscopicus subsp. jinggangensis
5008]
gi|374103072|gb|AEY91956.1| ribonuclease III [Streptomyces hygroscopicus subsp. jinggangensis
5008]
gi|451796063|gb|AGF66112.1| ribonuclease III [Streptomyces hygroscopicus subsp. jinggangensis
TL01]
Length = 274
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 167 GLDWKTSLQELTAIEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 226
Query: 232 AAKVAYTAL 240
AA+ A+ A+
Sbjct: 227 AAESAWRAI 235
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 170 WKTSLQELTAIEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 228
Query: 62 KLAF 65
+ A+
Sbjct: 229 ESAW 232
>gi|226365983|ref|YP_002783766.1| ribonuclease III [Rhodococcus opacus B4]
gi|226244473|dbj|BAH54821.1| ribonuclease III [Rhodococcus opacus B4]
Length = 252
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ G+ VP YE G H F + V V G+ GR+KK+AE K
Sbjct: 170 GLDWKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIGRSKKEAEQK 229
Query: 232 AAKVAYTAL 240
AA A+ AL
Sbjct: 230 AASTAWNAL 238
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL ++ +P Y G DHD F ++V V G + +S KE++ AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIVGGKPLGVGIG-RSKKEAEQKAA 231
Query: 62 KLAFLHFTSPPP 73
A+ + P
Sbjct: 232 STAWNALSDAGP 243
>gi|377561842|ref|ZP_09791272.1| ribonuclease III [Gordonia otitidis NBRC 100426]
gi|377521037|dbj|GAB36437.1| ribonuclease III [Gordonia otitidis NBRC 100426]
Length = 256
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ G P Y+ G H F + + GE GRTKK+AE K
Sbjct: 179 GLDWKTSLQELAAERGYGPPQYQISSTGPDHSKEFTARAVIAGEELGEGVGRTKKEAEQK 238
Query: 232 AAKVAYTALIER 243
AA +A+ AL ER
Sbjct: 239 AASLAWQALAER 250
>gi|291437029|ref|ZP_06576419.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672]
gi|291339924|gb|EFE66880.1| ribonuclease III [Streptomyces ghanaensis ATCC 14672]
Length = 286
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 181 GLDWKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 240
Query: 232 AAKVAYTAL 240
AA+ A+ ++
Sbjct: 241 AAESAWRSI 249
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 184 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 242
Query: 62 KLAF 65
+ A+
Sbjct: 243 ESAW 246
>gi|302558162|ref|ZP_07310504.1| ribonuclease III [Streptomyces griseoflavus Tu4000]
gi|302475780|gb|EFL38873.1| ribonuclease III [Streptomyces griseoflavus Tu4000]
Length = 272
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 167 GLDWKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 226
Query: 232 AAKVAYTAL 240
AA+ A+ ++
Sbjct: 227 AAESAWRSI 235
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 228
Query: 62 KLAF 65
+ A+
Sbjct: 229 ESAW 232
>gi|315502406|ref|YP_004081293.1| ribonuclease III [Micromonospora sp. L5]
gi|315409025|gb|ADU07142.1| ribonuclease III [Micromonospora sp. L5]
Length = 267
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
+K L EL+ GL VP Y G H+ TF + V V G + G GR+KK+AE +AA+
Sbjct: 168 WKTSLQELTAALGLGVPEYRIEGTGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAE 227
Query: 235 VAYTAL 240
A+ L
Sbjct: 228 SAWRTL 233
>gi|302865861|ref|YP_003834498.1| ribonuclease III [Micromonospora aurantiaca ATCC 27029]
gi|302568720|gb|ADL44922.1| ribonuclease III [Micromonospora aurantiaca ATCC 27029]
Length = 267
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
+K L EL+ GL VP Y G H+ TF + V V G + G GR+KK+AE +AA+
Sbjct: 168 WKTSLQELTAALGLGVPEYRIEGTGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAE 227
Query: 235 VAYTAL 240
A+ L
Sbjct: 228 SAWRTL 233
>gi|383782235|ref|YP_005466802.1| putative ribonuclease III [Actinoplanes missouriensis 431]
gi|381375468|dbj|BAL92286.1| putative ribonuclease III [Actinoplanes missouriensis 431]
Length = 246
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 39/69 (56%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
+K L EL+ GL VP YE G H TF + V V GE + G GR+KK+AE +AA
Sbjct: 167 WKTSLQELTAALGLGVPDYEIEDSGPDHAKTFTAWVVVAGERYGGSEGRSKKQAEQRAAA 226
Query: 235 VAYTALIER 243
A+ L +R
Sbjct: 227 AAWRTLTDR 235
>gi|440696029|ref|ZP_20878532.1| ribonuclease III [Streptomyces turgidiscabies Car8]
gi|440281787|gb|ELP69332.1| ribonuclease III [Streptomyces turgidiscabies Car8]
Length = 280
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 171 GLDWKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 230
Query: 232 AAKVAYTAL 240
AA+ A+ ++
Sbjct: 231 AAESAWRSI 239
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 174 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 232
Query: 62 KLAF 65
+ A+
Sbjct: 233 ESAW 236
>gi|294815350|ref|ZP_06773993.1| Ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
gi|326443704|ref|ZP_08218438.1| ribonuclease III [Streptomyces clavuligerus ATCC 27064]
gi|294327949|gb|EFG09592.1| Ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
Length = 303
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 174 GLDWKTSLQELTASEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 233
Query: 232 AAKVAY 237
AA+ A+
Sbjct: 234 AAESAW 239
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 177 WKTSLQELTASEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 235
Query: 62 KLAF 65
+ A+
Sbjct: 236 ESAW 239
>gi|289768866|ref|ZP_06528244.1| ribonuclease III [Streptomyces lividans TK24]
gi|418472126|ref|ZP_13041896.1| ribonuclease III [Streptomyces coelicoflavus ZG0656]
gi|384872625|sp|Q9ZBQ7.2|RNC_STRCO RecName: Full=Ribonuclease 3; AltName: Full=Antibiotic biosynthesis
protein B; Short=AbsB; AltName: Full=Ribonuclease III;
Short=RNase III
gi|289699065|gb|EFD66494.1| ribonuclease III [Streptomyces lividans TK24]
gi|371547286|gb|EHN75676.1| ribonuclease III [Streptomyces coelicoflavus ZG0656]
Length = 276
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 182 GLDWKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 241
Query: 232 AAKVAYTAL 240
AA+ A+ ++
Sbjct: 242 AAESAWRSI 250
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 185 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 243
Query: 62 KLAF 65
+ A+
Sbjct: 244 ESAW 247
>gi|424851985|ref|ZP_18276382.1| ribonuclease III [Rhodococcus opacus PD630]
gi|356666650|gb|EHI46721.1| ribonuclease III [Rhodococcus opacus PD630]
Length = 252
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ G+ VP YE G H F + V + G+ GR+KK+AE K
Sbjct: 170 GLDWKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIIGGKPLGVGIGRSKKEAEQK 229
Query: 232 AAKVAYTAL 240
AA A+ AL
Sbjct: 230 AASTAWNAL 238
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL ++ +P Y G DHD F ++V + G + +S KE++ AA
Sbjct: 173 WKTSLQELTAERGVGVPAYEITATGPDHDKEFTATVIIGGKPLGVGIG-RSKKEAEQKAA 231
Query: 62 KLAFLHFTSPPP 73
A+ + P
Sbjct: 232 STAWNALSDAGP 243
>gi|302554407|ref|ZP_07306749.1| ribonuclease III [Streptomyces viridochromogenes DSM 40736]
gi|302472025|gb|EFL35118.1| ribonuclease III [Streptomyces viridochromogenes DSM 40736]
Length = 274
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 171 GLDWKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 230
Query: 232 AAKVAYTAL 240
AA+ A+ ++
Sbjct: 231 AAESAWRSI 239
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 174 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 232
Query: 62 KLAF 65
+ A+
Sbjct: 233 ESAW 236
>gi|254392460|ref|ZP_05007640.1| ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
gi|197706127|gb|EDY51939.1| ribonuclease 3 [Streptomyces clavuligerus ATCC 27064]
Length = 300
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 171 GLDWKTSLQELTASEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 230
Query: 232 AAKVAY 237
AA+ A+
Sbjct: 231 AAESAW 236
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 174 WKTSLQELTASEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 232
Query: 62 KLAF 65
+ A+
Sbjct: 233 ESAW 236
>gi|398782208|ref|ZP_10546026.1| ribonuclease III [Streptomyces auratus AGR0001]
gi|396996945|gb|EJJ07924.1| ribonuclease III [Streptomyces auratus AGR0001]
Length = 253
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 135 GLDWKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 194
Query: 232 AAKVAY 237
AA+ A+
Sbjct: 195 AAESAW 200
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 138 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 196
Query: 62 KLAF 65
+ A+
Sbjct: 197 ESAW 200
>gi|345849801|ref|ZP_08802808.1| ribonuclease III [Streptomyces zinciresistens K42]
gi|345638782|gb|EGX60282.1| ribonuclease III [Streptomyces zinciresistens K42]
Length = 260
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 167 GLDWKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 226
Query: 232 AAKVAYTAL 240
AA+ A+ ++
Sbjct: 227 AAESAWLSI 235
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 228
Query: 62 KLAFL 66
+ A+L
Sbjct: 229 ESAWL 233
>gi|21223928|ref|NP_629707.1| ribonuclease III [Streptomyces coelicolor A3(2)]
gi|4007731|emb|CAA22415.1| ribonuclease III [Streptomyces coelicolor A3(2)]
Length = 272
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 178 GLDWKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 237
Query: 232 AAKVAYTAL 240
AA+ A+ ++
Sbjct: 238 AAESAWRSI 246
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 181 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 239
Query: 62 KLAF 65
+ A+
Sbjct: 240 ESAW 243
>gi|455651571|gb|EMF30297.1| ribonuclease III [Streptomyces gancidicus BKS 13-15]
Length = 272
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 167 GLDWKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 226
Query: 232 AAKVAYTAL 240
AA+ A+ ++
Sbjct: 227 AAESAWRSI 235
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 228
Query: 62 KLAF 65
+ A+
Sbjct: 229 ESAW 232
>gi|297559194|ref|YP_003678168.1| ribonuclease III [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
gi|296843642|gb|ADH65662.1| ribonuclease III [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
Length = 248
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ E L VP Y + G H TF + V V GE + GR+KK+AE +
Sbjct: 161 GLDWKTSLQELTAAEMLGVPEYHVDESGPDHQKTFRATVRVAGESYGLGEGRSKKEAEQQ 220
Query: 232 AAKVAYTALIER 243
AA+ A+ A+ R
Sbjct: 221 AAESAWKAIKAR 232
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH F+++V V G S+ +S KE++ AA
Sbjct: 164 WKTSLQELTAAEMLGVPEYHVDESGPDHQKTFRATVRVAGESYGLG-EGRSKKEAEQQAA 222
Query: 62 KLAF 65
+ A+
Sbjct: 223 ESAW 226
>gi|330466266|ref|YP_004404009.1| ribonuclease iii [Verrucosispora maris AB-18-032]
gi|328809237|gb|AEB43409.1| ribonuclease iii [Verrucosispora maris AB-18-032]
Length = 287
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
+K L EL+ GL VP Y G H+ TF + V V G + G GR+KK+AE +AA+
Sbjct: 168 WKTSLQELTAALGLGVPEYRIEGAGPDHLKTFTAWVVVAGNRYGGADGRSKKEAEQRAAE 227
Query: 235 VAYTAL 240
A+ L
Sbjct: 228 SAWRTL 233
>gi|441509918|ref|ZP_20991830.1| ribonuclease III [Gordonia aichiensis NBRC 108223]
gi|441445933|dbj|GAC49791.1| ribonuclease III [Gordonia aichiensis NBRC 108223]
Length = 261
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ G P Y+ G H F + + GE GRTKK+AE K
Sbjct: 184 GLDWKTSLQELAAERGYGPPQYQISSTGPDHSKEFTARAVIAGEELGEGIGRTKKEAEQK 243
Query: 232 AAKVAYTALIER 243
AA +A+ AL ER
Sbjct: 244 AASLAWQALTER 255
>gi|408529026|emb|CCK27200.1| Ribonuclease 3 [Streptomyces davawensis JCM 4913]
Length = 263
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 171 GLDWKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 230
Query: 232 AAKVAYTAL 240
AA+ A+ ++
Sbjct: 231 AAESAWRSI 239
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 174 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 232
Query: 62 KLAF 65
+ A+
Sbjct: 233 ESAW 236
>gi|383649281|ref|ZP_09959687.1| ribonuclease III [Streptomyces chartreusis NRRL 12338]
Length = 269
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 165 GLDWKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 224
Query: 232 AAKVAYTAL 240
AA+ A+ ++
Sbjct: 225 AAESAWRSI 233
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 168 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 226
Query: 62 KLAF 65
+ A+
Sbjct: 227 ESAW 230
>gi|386382907|ref|ZP_10068467.1| ribonuclease III [Streptomyces tsukubaensis NRRL18488]
gi|385669633|gb|EIF92816.1| ribonuclease III [Streptomyces tsukubaensis NRRL18488]
Length = 285
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 176 GLDWKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 235
Query: 232 AAKVAY 237
AA+ A+
Sbjct: 236 AAESAW 241
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 179 WKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 237
Query: 62 KLAF 65
+ A+
Sbjct: 238 ESAW 241
>gi|297191816|ref|ZP_06909214.1| ribonuclease III [Streptomyces pristinaespiralis ATCC 25486]
gi|197722006|gb|EDY65914.1| ribonuclease III [Streptomyces pristinaespiralis ATCC 25486]
Length = 296
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 164 GLDWKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 223
Query: 232 AAKVAY 237
AA+ A+
Sbjct: 224 AAESAW 229
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 167 WKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 225
Query: 62 KLAF 65
+ A+
Sbjct: 226 ESAW 229
>gi|297202624|ref|ZP_06920021.1| ribonuclease III [Streptomyces sviceus ATCC 29083]
gi|197713199|gb|EDY57233.1| ribonuclease III [Streptomyces sviceus ATCC 29083]
Length = 272
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 167 GLDWKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 226
Query: 232 AAKVAYTAL 240
AA+ A+ ++
Sbjct: 227 AAESAWRSI 235
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 170 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 228
Query: 62 KLAF 65
+ A+
Sbjct: 229 ESAW 232
>gi|354615572|ref|ZP_09033327.1| Ribonuclease 3 [Saccharomonospora paurometabolica YIM 90007]
gi|353220077|gb|EHB84560.1| Ribonuclease 3 [Saccharomonospora paurometabolica YIM 90007]
Length = 265
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ GL VP Y+ + G H F ++V V G G TKK+AE K
Sbjct: 167 GLDWKTSLQELTASAGLGVPEYKVVDTGPDHRKEFNAVVLVGGRSLGEGDGTTKKEAEQK 226
Query: 232 AAKVAYTALIE 242
AA+ A+ AL E
Sbjct: 227 AAESAWRALNE 237
>gi|302537165|ref|ZP_07289507.1| ribonuclease III [Streptomyces sp. C]
gi|302446060|gb|EFL17876.1| ribonuclease III [Streptomyces sp. C]
Length = 273
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 171 GLDWKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 230
Query: 232 AAKVAYTAL 240
AA+ A+ +
Sbjct: 231 AAESAWRGI 239
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 174 WKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 232
Query: 62 KLAF 65
+ A+
Sbjct: 233 ESAW 236
>gi|311742943|ref|ZP_07716751.1| ribonuclease III [Aeromicrobium marinum DSM 15272]
gi|311313623|gb|EFQ83532.1| ribonuclease III [Aeromicrobium marinum DSM 15272]
Length = 232
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
+K L E++ GL VP Y G H +F + V + VF G AGR+KK+AE + A+
Sbjct: 156 WKTSLQEMAAHHGLGVPRYHLEGTGPDHARSFTAEVHLGERVFAGGAGRSKKEAEQEVAE 215
Query: 235 VAYTALIE 242
+A+ L +
Sbjct: 216 IAWRTLAD 223
>gi|254383289|ref|ZP_04998642.1| ribonuclease 3 [Streptomyces sp. Mg1]
gi|194342187|gb|EDX23153.1| ribonuclease 3 [Streptomyces sp. Mg1]
Length = 277
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 171 GLDWKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 230
Query: 232 AAKVAYTAL 240
AA+ A+ +
Sbjct: 231 AAESAWRGI 239
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 174 WKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 232
Query: 62 KLAF 65
+ A+
Sbjct: 233 ESAW 236
>gi|72161055|ref|YP_288712.1| ribonuclease III [Thermobifida fusca YX]
gi|90101652|sp|Q47S78.1|RNC_THEFY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|71914787|gb|AAZ54689.1| RNAse III [Thermobifida fusca YX]
Length = 240
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ E L VP Y + G H TF + V V G+ + GR+KK+AE +
Sbjct: 161 GLDWKTSLQELTAAELLGVPEYVVEESGPDHQKTFRATVRVAGQTYGSGEGRSKKEAEQQ 220
Query: 232 AAKVAYTAL 240
AA+ A+ A+
Sbjct: 221 AAESAWKAI 229
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH F+++V V G ++ S +S KE++ AA
Sbjct: 164 WKTSLQELTAAELLGVPEYVVEESGPDHQKTFRATVRVAGQTYGSG-EGRSKKEAEQQAA 222
Query: 62 KLAF 65
+ A+
Sbjct: 223 ESAW 226
>gi|291240590|ref|XP_002740205.1| PREDICTED: RIKEN cDNA 1810030O07-like [Saccoglossus kowalevskii]
Length = 838
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 74/191 (38%), Gaps = 50/191 (26%)
Query: 77 PNVQCRYKSVLQNYARRKNLDSP----LYSSIREGPAHACSF---------------KAR 117
P +Q +YK LQ A+R +S L S I C F
Sbjct: 304 PKLQAKYKIDLQTNAQRNKFESKYTYILLSCI------VCCFAYQIYILGILGRSLVSCE 357
Query: 118 VTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN 177
VT+ T+ S K AE AA+VAL L +E + L V Y V YKN
Sbjct: 358 VTVGEQTYRSTIVTSKPKDAEQDAARVALVELGQSGDEEPVSL--SVEEYF----VNYKN 411
Query: 178 VLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTK------------ 225
VL E + GL P YET K P FI+ + Y G++K
Sbjct: 412 VLQEHCQKTGLHSPDYETTKIKE-DPPQFIAW------LTYKAIGKSKKYLSESLIHTSA 464
Query: 226 KKAEMKAAKVA 236
KKAE AAKVA
Sbjct: 465 KKAEQSAAKVA 475
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 76/199 (38%), Gaps = 52/199 (26%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLS-----FHSSVSCKSSKES 56
YK +QE C + P Y T K D P+F + ++ + S+ S+K++
Sbjct: 409 YKNVLQEHCQKTGLHSPDYETTKIKED-PPQFIAWLTYKAIGKSKKYLSESLIHTSAKKA 467
Query: 57 QNDAAKLAFLHF-----------------TSPPPP-------PPPNVQ------------ 80
+ AAK+A L T P PP PP N
Sbjct: 468 EQSAAKVACLDLKLALPEPIRILPKPMKSTQPTPPKEKELMQPPDNSDEKSQTHSPPAGN 527
Query: 81 ------CRYKSVLQNYARRKNLDSPLYSS--IREGPAHACSFKARVTIDGHTFESLEFF- 131
YK++LQ + ++ D+P Y S I++ PA + T+ S E
Sbjct: 528 QQHDDFINYKNILQEHCQKNRFDTPKYESTKIQDNPAQFTTVLTYKTLGNTVKYSSEGLT 587
Query: 132 -KNLKQAEHAAAKVALFSL 149
N K++E +AAKVA L
Sbjct: 588 HSNKKESEQSAAKVACLGL 606
>gi|443705473|gb|ELU02009.1| hypothetical protein CAPTEDRAFT_221252 [Capitella teleta]
Length = 428
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 32/174 (18%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+K K+QE C QK+ ++P+Y + D A++D KS+V VNG F S + KES+ DAA
Sbjct: 50 FKNKLQEYCQQKKIAIPKYELIPDPANNDK--KSAVIVNGERFESVGAYPKKKESEMDAA 107
Query: 62 KLAFLHFTSPPPPPPPNV-------------QCRYK-----------SVLQNYARRKNLD 97
+A + P C+ + L +R ++
Sbjct: 108 CVALKALQTAEAQKAPKYAAEQPVAITAVAKNCKPEKEKESTEENMIGQLNEVCQRNSVP 167
Query: 98 SPLYSSIREGPAH-ACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLA 150
+P Y+ + +C K ++ + + E F+N K AE A AK AL L
Sbjct: 168 APQYNERGDKSGEFSCDVKFKMVVVLN-----ENFENKKCAEKAVAKAALTKLG 216
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 78/187 (41%), Gaps = 29/187 (15%)
Query: 77 PNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQ 136
P +K+ LQ Y ++K + P Y I + PA+ K+ V ++G FES+ + K+
Sbjct: 44 PTGDINFKNKLQEYCQQKKIAIPKYELIPD-PANN-DKKSAVIVNGERFESVGAYPKKKE 101
Query: 137 AEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNV----------------LH 180
+E AA VAL +L + Q+A A + + KN L+
Sbjct: 102 SEMDAACVALKALQTAEAQKAPKYAAEQPVAI---TAVAKNCKPEKEKESTEENMIGQLN 158
Query: 181 ELSLREGLPVPLYETI--KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYT 238
E+ R +P P Y K G MV V E F KK AE AK A T
Sbjct: 159 EVCQRNSVPAPQYNERGDKSGEFSCDVKFKMVVVLNENF-----ENKKCAEKAVAKAALT 213
Query: 239 AL-IERK 244
L IE++
Sbjct: 214 KLGIEKE 220
>gi|357392059|ref|YP_004906900.1| putative ribonuclease 3 [Kitasatospora setae KM-6054]
gi|311898536|dbj|BAJ30944.1| putative ribonuclease 3 [Kitasatospora setae KM-6054]
Length = 269
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ GL VP Y + G H TF + V G+ +GR+KK+AE K
Sbjct: 179 GLDWKTSLQELTAAVGLGVPEYVVTESGPDHEKTFTAAARVAGQDHGSGSGRSKKEAEQK 238
Query: 232 AAKVAYTAL 240
AA+ A+ A+
Sbjct: 239 AAESAWRAI 247
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL +P Y + G DH+ F ++ V G H S S +S KE++ AA
Sbjct: 182 WKTSLQELTAAVGLGVPEYVVTESGPDHEKTFTAAARVAGQD-HGSGSGRSKKEAEQKAA 240
Query: 62 KLAF 65
+ A+
Sbjct: 241 ESAW 244
>gi|385678566|ref|ZP_10052494.1| ribonuclease III [Amycolatopsis sp. ATCC 39116]
Length = 230
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 38/71 (53%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ GL VP Y+ G H F + V V G F G TKK+AE K
Sbjct: 152 GLDWKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSATVLVAGRDFGNGNGTTKKEAEQK 211
Query: 232 AAKVAYTALIE 242
AA+ A+ AL E
Sbjct: 212 AAETAWRALSE 222
>gi|229491421|ref|ZP_04385245.1| ribonuclease III [Rhodococcus erythropolis SK121]
gi|453068807|ref|ZP_21972078.1| ribonuclease III [Rhodococcus qingshengii BKS 20-40]
gi|229321706|gb|EEN87503.1| ribonuclease III [Rhodococcus erythropolis SK121]
gi|452764990|gb|EME23255.1| ribonuclease III [Rhodococcus qingshengii BKS 20-40]
Length = 257
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 10/104 (9%)
Query: 149 LACDDFQEAIFLYAHVSMYLWDD----------GVFYKNVLHELSLREGLPVPLYETIKC 198
L Q I V + L+DD G+ +K L EL+ G VP+YE
Sbjct: 137 LGAIHLQHGIETARRVVLDLFDDLLTRAPLLGAGLDWKTSLQELTAEHGAGVPVYEITAT 196
Query: 199 GAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE 242
G H F + V + G+ GR+KK+AE KAA A+ + E
Sbjct: 197 GPDHDKEFTATVLISGKPLGVGVGRSKKEAEQKAASSAWKTMSE 240
>gi|449128122|ref|ZP_21764369.1| ribonuclease 3 [Treponema denticola SP33]
gi|448941455|gb|EMB22356.1| ribonuclease 3 [Treponema denticola SP33]
Length = 246
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK++L EL ++ VP YE K P H TF V ++G+V+ +G+TKK+AE A
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVYGPLSGKTKKEAEQSVA 231
Query: 234 KVAYTAL 240
KVAY L
Sbjct: 232 KVAYEGL 238
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YK+ +QEL +K ++P+Y K G DHD F SVS+NG + +S K+ KE++
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSING-KVYGPLSGKTKKEAEQSV 230
Query: 61 AKLAF 65
AK+A+
Sbjct: 231 AKVAY 235
>gi|329936742|ref|ZP_08286449.1| ribonuclease III [Streptomyces griseoaurantiacus M045]
gi|329303972|gb|EGG47855.1| ribonuclease III [Streptomyces griseoaurantiacus M045]
Length = 273
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 178 GLDWKTSLQELTATEGLGVPEYLVSETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 237
Query: 232 AAKVAYTAL 240
AA+ A+ ++
Sbjct: 238 AAESAWRSI 246
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 181 WKTSLQELTATEGLGVPEYLVSETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 239
Query: 62 KLAF 65
+ A+
Sbjct: 240 ESAW 243
>gi|296130133|ref|YP_003637383.1| ribonuclease III [Cellulomonas flavigena DSM 20109]
gi|296021948|gb|ADG75184.1| ribonuclease III [Cellulomonas flavigena DSM 20109]
Length = 240
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 35/69 (50%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L ELS GL P YE G H TF + V GEV G KK AE +
Sbjct: 156 GLDWKTSLQELSASLGLGAPYYEVTGEGPDHARTFTASAVVGGEVRGTGTGPAKKIAEQE 215
Query: 232 AAKVAYTAL 240
AA A+TAL
Sbjct: 216 AASAAWTAL 224
>gi|449125768|ref|ZP_21762070.1| ribonuclease 3 [Treponema denticola OTK]
gi|448939737|gb|EMB20654.1| ribonuclease 3 [Treponema denticola OTK]
Length = 246
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK++L EL ++ VP YE K P H TF V V+G+V+ +G+TKK+AE A
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSVNGKVYGPLSGKTKKEAEQSVA 231
Query: 234 KVAYTAL 240
KVAY L
Sbjct: 232 KVAYENL 238
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YK+ +QEL +K ++P+Y K G DHD F SVSVNG + +S K+ KE++
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSVNG-KVYGPLSGKTKKEAEQSV 230
Query: 61 AKLAFLHFTS 70
AK+A+ + S
Sbjct: 231 AKVAYENLCS 240
>gi|350567556|ref|ZP_08935966.1| ribonuclease 3 [Propionibacterium avidum ATCC 25577]
gi|348662627|gb|EGY79284.1| ribonuclease 3 [Propionibacterium avidum ATCC 25577]
Length = 259
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G +K VL E +G P Y+ + G H + + EVDG++ G KK+AE
Sbjct: 184 GTDWKTVLQEYCAEQGFEAPRYDIVGSGPDHNRRYCARAEVDGKLHAAYTGHNKKEAEQG 243
Query: 232 AAKVAYTALI 241
AA++A ALI
Sbjct: 244 AAQLAVAALI 253
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QE C ++ + PRY + G DH+ R+ + V+G H++ + + KE++ AA
Sbjct: 187 WKTVLQEYCAEQGFEAPRYDIVGSGPDHNRRYCARAEVDG-KLHAAYTGHNKKEAEQGAA 245
Query: 62 KLAFLHFTSP 71
+LA P
Sbjct: 246 QLAVAALIPP 255
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+VLQ Y + ++P Y + GP H + AR +DG + N K+AE AA
Sbjct: 187 WKTVLQEYCAEQGFEAPRYDIVGSGPDHNRRYCARAEVDGK-LHAAYTGHNKKEAEQGAA 245
Query: 143 KVALFSL 149
++A+ +L
Sbjct: 246 QLAVAAL 252
>gi|432958614|ref|XP_004086071.1| PREDICTED: double-stranded RNA-specific editase 1-like [Oryzias
latipes]
Length = 645
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L+ LR GL L + G H P F+ VEVDG F G AG TKKKA++ AA+
Sbjct: 57 KNALEQLNELRPGLQYTLLR--QSGPVHAPLFVMQVEVDGRFFQG-AGLTKKKAKLSAAE 113
Query: 235 VAYTALIE 242
A +L++
Sbjct: 114 QALQSLLQ 121
>gi|357462007|ref|XP_003601285.1| hypothetical protein MTR_3g078040 [Medicago truncatula]
gi|355490333|gb|AES71536.1| hypothetical protein MTR_3g078040 [Medicago truncatula]
Length = 343
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YKS LQ++ +R P Y SI EG HA F++ VT+ G T + K AE A
Sbjct: 44 YKSKLQDFVQRCGYVVPAYQSINEGMQHASKFRSNVTMGGITINGQGTYARRKDAEQEIA 103
Query: 143 KVAL 146
K+AL
Sbjct: 104 KIAL 107
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 43/69 (62%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
+YK+K+Q+ + + +P Y ++ +G H +F+S+V++ G++ + + K+++ +
Sbjct: 43 VYKSKLQDFVQRCGYVVPAYQSINEGMQHASKFRSNVTMGGITINGQGTYARRKDAEQEI 102
Query: 61 AKLAFLHFT 69
AK+A +FT
Sbjct: 103 AKIALEYFT 111
>gi|359767990|ref|ZP_09271770.1| ribonuclease III [Gordonia polyisoprenivorans NBRC 16320]
gi|378717492|ref|YP_005282381.1| ribonuclease 3 [Gordonia polyisoprenivorans VH2]
gi|359314567|dbj|GAB24603.1| ribonuclease III [Gordonia polyisoprenivorans NBRC 16320]
gi|375752195|gb|AFA73015.1| ribonuclease 3 [Gordonia polyisoprenivorans VH2]
Length = 243
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ G P Y+ G H F ++ V GE GRTKK+AE K
Sbjct: 168 GLDWKTSLQELTAEHGFGPPQYQVSSTGPDHNKEFTAVAVVAGESVGEGVGRTKKEAEQK 227
Query: 232 AAKVAYTALIER 243
AA +A+ L +R
Sbjct: 228 AAALAWQTLTDR 239
>gi|449130794|ref|ZP_21767013.1| ribonuclease 3 [Treponema denticola SP37]
gi|448941834|gb|EMB22734.1| ribonuclease 3 [Treponema denticola SP37]
Length = 246
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK++L EL ++ VP YE K P H TF V V+G+V+ +G+TKK+AE A
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSVNGKVYGPLSGKTKKEAEQSVA 231
Query: 234 KVAYTAL 240
KVAY L
Sbjct: 232 KVAYENL 238
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YK+ +QEL +K ++P+Y K G DHD F SVSVNG + +S K+ KE++
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSVNG-KVYGPLSGKTKKEAEQSV 230
Query: 61 AKLAFLHFTS 70
AK+A+ + S
Sbjct: 231 AKVAYENLCS 240
>gi|282854597|ref|ZP_06263932.1| ribonuclease III [Propionibacterium acnes J139]
gi|386069698|ref|YP_005984594.1| ribonuclease III [Propionibacterium acnes ATCC 11828]
gi|282582179|gb|EFB87561.1| ribonuclease III [Propionibacterium acnes J139]
gi|353454065|gb|AER04584.1| ribonuclease III [Propionibacterium acnes ATCC 11828]
Length = 246
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G +K VL E G P YE + G H + + VDG ++ G KK+AE
Sbjct: 170 GTDWKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGRLYAAYTGHNKKEAEQG 229
Query: 232 AAKVAYTALI 241
AA+ A +ALI
Sbjct: 230 AARRAVSALI 239
Score = 44.3 bits (103), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+VLQ Y D+P Y + GP H + AR +DG + + N K+AE AA
Sbjct: 173 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGRLYAAYTGH-NKKEAEQGAA 231
Query: 143 KVALFSL 149
+ A+ +L
Sbjct: 232 RRAVSAL 238
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QE C + + PRY + G DH+ R+ + +V+G +++ + + KE++ AA
Sbjct: 173 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDG-RLYAAYTGHNKKEAEQGAA 231
Query: 62 KLA 64
+ A
Sbjct: 232 RRA 234
>gi|441178347|ref|ZP_20970023.1| ribonuclease III [Streptomyces rimosus subsp. rimosus ATCC 10970]
gi|440614520|gb|ELQ77785.1| ribonuclease III [Streptomyces rimosus subsp. rimosus ATCC 10970]
Length = 275
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 175 GLDWKTSLQELTATEGLGVPEYMVSETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 234
Query: 232 AAKVAY 237
AA+ A+
Sbjct: 235 AAESAW 240
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 178 WKTSLQELTATEGLGVPEYMVSETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 236
Query: 62 KLAF 65
+ A+
Sbjct: 237 ESAW 240
>gi|339500023|ref|YP_004698058.1| ribonuclease 3 [Spirochaeta caldaria DSM 7334]
gi|338834372|gb|AEJ19550.1| Ribonuclease 3 [Spirochaeta caldaria DSM 7334]
Length = 249
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKT +QE C Q + P Y+ +K G DH+ F V VNG+++ + K+ KE++ +A
Sbjct: 179 YKTLLQEKCQQLYKNYPTYTLLKRTGPDHERMFWVEVHVNGVAYGPGIG-KNKKEAEQEA 237
Query: 61 AKLAFLHFT 69
AKLA+ T
Sbjct: 238 AKLAYKAIT 246
>gi|218196103|gb|EEC78530.1| hypothetical protein OsI_18477 [Oryza sativa Indica Group]
Length = 562
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 10/103 (9%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
++S+L+ A ++ P+ +S R P FKA V +G TFES F L+ AEHAAA
Sbjct: 31 FRSLLRGAA---SICHPMRASARV-PITPHGFKATVNFNGETFESPAFCSTLRLAEHAAA 86
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLR 185
+VAL L+ ++ + + D+ YKN+L E + R
Sbjct: 87 EVALNELSKRGPSSSL------AAKVLDETGIYKNLLQETAHR 123
>gi|441206731|ref|ZP_20973264.1| ribonuclease III [Mycobacterium smegmatis MKD8]
gi|440628429|gb|ELQ90228.1| ribonuclease III [Mycobacterium smegmatis MKD8]
Length = 230
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKA-GRTKKKAEM 230
G+ +K+ L EL+ GL P Y G H F + V V GE YG GRTKK+AE+
Sbjct: 159 GLDWKSSLQELTAARGLGAPAYVVTSTGPDHDKEFSATV-VIGEAEYGHGVGRTKKEAEL 217
Query: 231 KAAKVAYTALIE 242
KAA AY L E
Sbjct: 218 KAAASAYKTLDE 229
>gi|422390078|ref|ZP_16470174.1| ribonuclease III [Propionibacterium acnes HL103PA1]
gi|422463027|ref|ZP_16539646.1| ribonuclease III [Propionibacterium acnes HL060PA1]
gi|422467304|ref|ZP_16543858.1| ribonuclease III [Propionibacterium acnes HL110PA4]
gi|422469381|ref|ZP_16545906.1| ribonuclease III [Propionibacterium acnes HL110PA3]
gi|422565430|ref|ZP_16641079.1| ribonuclease III [Propionibacterium acnes HL082PA2]
gi|422575316|ref|ZP_16650857.1| ribonuclease III [Propionibacterium acnes HL001PA1]
gi|314923852|gb|EFS87683.1| ribonuclease III [Propionibacterium acnes HL001PA1]
gi|314966091|gb|EFT10190.1| ribonuclease III [Propionibacterium acnes HL082PA2]
gi|314981862|gb|EFT25955.1| ribonuclease III [Propionibacterium acnes HL110PA3]
gi|315090788|gb|EFT62764.1| ribonuclease III [Propionibacterium acnes HL110PA4]
gi|315094941|gb|EFT66917.1| ribonuclease III [Propionibacterium acnes HL060PA1]
gi|327328032|gb|EGE69801.1| ribonuclease III [Propionibacterium acnes HL103PA1]
Length = 265
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G +K VL E G P YE + G H + + VDG ++ G KK+AE
Sbjct: 189 GTDWKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGRLYAAYTGHNKKEAEQG 248
Query: 232 AAKVAYTALI 241
AA+ A +ALI
Sbjct: 249 AARRAVSALI 258
Score = 44.3 bits (103), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+VLQ Y D+P Y + GP H + AR +DG + + N K+AE AA
Sbjct: 192 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGRLYAAYTGH-NKKEAEQGAA 250
Query: 143 KVALFSL 149
+ A+ +L
Sbjct: 251 RRAVSAL 257
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QE C + + PRY + G DH+ R+ + +V+G +++ + + KE++ AA
Sbjct: 192 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDG-RLYAAYTGHNKKEAEQGAA 250
Query: 62 KLA 64
+ A
Sbjct: 251 RRA 253
>gi|444432141|ref|ZP_21227300.1| ribonuclease III [Gordonia soli NBRC 108243]
gi|443886970|dbj|GAC69021.1| ribonuclease III [Gordonia soli NBRC 108243]
Length = 243
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L ELS +G P Y+ G H F + + GE GRTKK+AE K
Sbjct: 168 GLDWKTSLQELSAEQGQGPPQYQIASTGPDHDKEFTATAVIAGEELGTGVGRTKKEAEQK 227
Query: 232 AAKVAYTALIER 243
AA A+ AL +R
Sbjct: 228 AAAHAWKALSDR 239
>gi|42526537|ref|NP_971635.1| ribonuclease III [Treponema denticola ATCC 35405]
gi|422342862|ref|ZP_16423801.1| ribonuclease 3 [Treponema denticola F0402]
gi|449103044|ref|ZP_21739791.1| ribonuclease 3 [Treponema denticola AL-2]
gi|449106930|ref|ZP_21743591.1| ribonuclease 3 [Treponema denticola ASLM]
gi|449112349|ref|ZP_21748903.1| ribonuclease 3 [Treponema denticola ATCC 33521]
gi|449115432|ref|ZP_21751896.1| ribonuclease 3 [Treponema denticola ATCC 35404]
gi|451968629|ref|ZP_21921858.1| ribonuclease 3 [Treponema denticola US-Trep]
gi|81412559|sp|Q73NX5.1|RNC_TREDE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|41816730|gb|AAS11516.1| ribonuclease III [Treponema denticola ATCC 35405]
gi|325473478|gb|EGC76673.1| ribonuclease 3 [Treponema denticola F0402]
gi|448953209|gb|EMB34004.1| ribonuclease 3 [Treponema denticola ATCC 35404]
gi|448955811|gb|EMB36575.1| ribonuclease 3 [Treponema denticola ATCC 33521]
gi|448963842|gb|EMB44517.1| ribonuclease 3 [Treponema denticola ASLM]
gi|448965846|gb|EMB46507.1| ribonuclease 3 [Treponema denticola AL-2]
gi|451702642|gb|EMD57044.1| ribonuclease 3 [Treponema denticola US-Trep]
Length = 246
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK++L EL ++ VP YE K P H TF V ++G+V+ +G+TKK+AE A
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVYGPLSGKTKKEAEQSVA 231
Query: 234 KVAYTAL 240
KVAY L
Sbjct: 232 KVAYENL 238
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YK+ +QEL +K ++P+Y K G DHD F SVS+NG + +S K+ KE++
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSING-KVYGPLSGKTKKEAEQSV 230
Query: 61 AKLAFLHFTS 70
AK+A+ + S
Sbjct: 231 AKVAYENLCS 240
>gi|118470776|ref|YP_886758.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155]
gi|399986771|ref|YP_006567120.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155]
gi|118172063|gb|ABK72959.1| ribonuclease III [Mycobacterium smegmatis str. MC2 155]
gi|399231332|gb|AFP38825.1| Ribonuclease III [Mycobacterium smegmatis str. MC2 155]
Length = 230
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKA-GRTKKKAEM 230
G+ +K+ L EL+ GL P Y G H F + V V GE YG GRTKK+AE+
Sbjct: 159 GLDWKSSLQELTAARGLGAPAYVVTSTGPDHDKEFSATV-VIGEAEYGHGVGRTKKEAEL 217
Query: 231 KAAKVAYTALIE 242
KAA AY L E
Sbjct: 218 KAAASAYKTLDE 229
>gi|449117995|ref|ZP_21754410.1| ribonuclease 3 [Treponema denticola H-22]
gi|448949886|gb|EMB30710.1| ribonuclease 3 [Treponema denticola H-22]
Length = 246
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK++L EL ++ VP YE K P H TF V ++G+V+ +G+TKK+AE A
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVYGPLSGKTKKEAEQSVA 231
Query: 234 KVAYTAL 240
KVAY L
Sbjct: 232 KVAYEDL 238
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YK+ +QEL +K ++P+Y K G DHD F SVS+NG + +S K+ KE++
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSING-KVYGPLSGKTKKEAEQSV 230
Query: 61 AKLAF 65
AK+A+
Sbjct: 231 AKVAY 235
>gi|449120559|ref|ZP_21756944.1| ribonuclease 3 [Treponema denticola H1-T]
gi|449122966|ref|ZP_21759297.1| ribonuclease 3 [Treponema denticola MYR-T]
gi|448947062|gb|EMB27912.1| ribonuclease 3 [Treponema denticola MYR-T]
gi|448947954|gb|EMB28797.1| ribonuclease 3 [Treponema denticola H1-T]
Length = 246
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK++L EL ++ VP YE K P H TF V ++G+V+ +G+TKK+AE A
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVYGPLSGKTKKEAEQSVA 231
Query: 234 KVAYTAL 240
KVAY L
Sbjct: 232 KVAYEDL 238
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YK+ +QEL +K ++P+Y K G DHD F SVS+NG + +S K+ KE++
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSING-KVYGPLSGKTKKEAEQSV 230
Query: 61 AKLAF 65
AK+A+
Sbjct: 231 AKVAY 235
>gi|212291457|gb|ACJ23858.1| double-stranded RNA-dependent protein kinase [Oplegnathus
fasciatus]
Length = 704
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/290 (20%), Positives = 117/290 (40%), Gaps = 55/290 (18%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
Y ++ E + R +L G DH F V +NG ++ V K+ +E++++AA
Sbjct: 6 YIARLNEFAQRTRSALKYNDLGCVGPDHIKTFTQRVVLNGKAYPDGVG-KNKREAKHNAA 64
Query: 62 KLAFLHF-------------TSPPPPPPPNVQCRYKSV-----LQNYARRKNLDSPLYSS 103
K A S PP P+ Q R ++ L Y ++ + S
Sbjct: 65 KNALKCLLENEHEDSIDSTENSAEAPPTPDCQTRVSNINYICWLNEYGQKNRVTIRAVES 124
Query: 104 IREGPAHA---CSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLAC--------- 151
R GP +A CSF + G + ++ + ++A+ AAK+ ++ + C
Sbjct: 125 TRPGPNNATLCCSF----VVGGREYPTV-TGETKREAKEEAAKL-VYDVICGRKTTETAD 178
Query: 152 -----------DDFQEAIFLYAHVSMYL---WDDGVF----YKNVLHELSLREGLPVPLY 193
++ + + + + L D F Y +++ +
Sbjct: 179 EKHNRSSGQQKEELNQNVLDICNETRRLSVNSKDNSFTETNYIGLVNHYCQKTNGSHKFI 238
Query: 194 ETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER 243
E +CG PH P F + ++ + + G++ K+A+ AA++A++AL E+
Sbjct: 239 EERRCGPPHNPRFFYKLVINDKDYPVGEGKSAKEAKKNAAQLAWSALQEQ 288
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 9/145 (6%)
Query: 107 GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVS- 165
GP H +F RV ++G + KN ++A+H AAK AL L ++ +++I + +
Sbjct: 30 GPDHIKTFTQRVVLNGKAYPD-GVGKNKREAKHNAAKNALKCLLENEHEDSIDSTENSAE 88
Query: 166 ------MYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYG 219
+ Y L+E + + + E+ + G P+ T V G +
Sbjct: 89 APPTPDCQTRVSNINYICWLNEYGQKNRVTIRAVESTRPG-PNNATLCCSFVVGGREYPT 147
Query: 220 KAGRTKKKAEMKAAKVAYTALIERK 244
G TK++A+ +AAK+ Y + RK
Sbjct: 148 VTGETKREAKEEAAKLVYDVICGRK 172
>gi|449109836|ref|ZP_21746469.1| ribonuclease 3 [Treponema denticola ATCC 33520]
gi|448958289|gb|EMB39022.1| ribonuclease 3 [Treponema denticola ATCC 33520]
Length = 246
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK++L EL ++ VP YE K P H TF V ++G+V+ +G+TKK+AE A
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVYGPLSGKTKKEAEQSVA 231
Query: 234 KVAYTAL 240
KVAY L
Sbjct: 232 KVAYEDL 238
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YK+ +QEL +K ++P+Y K G DHD F SVS+NG + +S K+ KE++
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSING-KVYGPLSGKTKKEAEQSV 230
Query: 61 AKLAF 65
AK+A+
Sbjct: 231 AKVAY 235
>gi|420153945|ref|ZP_14660877.1| ribonuclease III [Actinomyces massiliensis F0489]
gi|394756355|gb|EJF39456.1| ribonuclease III [Actinomyces massiliensis F0489]
Length = 278
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ GL P YE G H F + VDG V G +KK AE K
Sbjct: 175 GLDWKTSLQELAAAHGLGNPRYEVDSVGPDHERIFTAQAIVDGAVRGEGTGTSKKLAEHK 234
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ AY ++ L HG + + ++AD
Sbjct: 235 AAEAAYASI--------LASHGDGGLDLPGVNEALRAD 264
>gi|408680983|ref|YP_006880810.1| Ribonuclease III [Streptomyces venezuelae ATCC 10712]
gi|328885312|emb|CCA58551.1| Ribonuclease III [Streptomyces venezuelae ATCC 10712]
Length = 270
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 168 GLDWKTSLQELTAAEGLGVPEYLVSEEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 227
Query: 232 AAKVAY 237
AA+ A+
Sbjct: 228 AAESAW 233
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y ++G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 171 WKTSLQELTAAEGLGVPEYLVSEEGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 229
Query: 62 KLAF 65
+ A+
Sbjct: 230 ESAW 233
>gi|126307762|ref|XP_001373191.1| PREDICTED: double-stranded RNA-specific adenosine deaminase
[Monodelphis domestica]
Length = 1131
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 97/265 (36%), Gaps = 48/265 (18%)
Query: 24 KDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFT-------------- 69
+ G H+PRFK ++G F + + Q+ AAK + F
Sbjct: 458 QSGPSHEPRFKYQAVISGRRFPPAEAGSKKLARQDAAAKAMTILFQESGAQEEVTSEGLP 517
Query: 70 --------------SPPPPPPPNVQCRYK---SVLQNYARRKNLDSPLYSSIREGPAHAC 112
S P P P+ K SVL + ++ +EGPAH
Sbjct: 518 PPVEEEPEQPSAAESEPCPISPSSLLFGKNPISVLMEHVQKNGSTCEFLLISQEGPAHDP 577
Query: 113 SFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDD----FQEAIFLYAHVS--- 165
FK V + TF ++ + K A+ AA+VA+ +L D + + ++ VS
Sbjct: 578 KFKYCVKMGSQTFPTM-MANSKKAAKQMAAEVAVKALCGDSSLTPWTKQVYTSKLVSPSA 636
Query: 166 ----MYLWDDGVFYKNV-----LHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEV 216
D + Y N L E + G + G PH P FI +V G
Sbjct: 637 TPGKAKKIGDLIKYLNANPISGLFEYARSNGFAAEFKLVDQSGPPHEPKFIYQAKVGGRW 696
Query: 217 FYGKAGRTKKKAEMKAAKVAYTALI 241
F + +KK+ + +AA A LI
Sbjct: 697 FPAVSAHSKKQGKQEAADAALRVLI 721
>gi|407648449|ref|YP_006812208.1| ribonuclease III [Nocardia brasiliensis ATCC 700358]
gi|407311333|gb|AFU05234.1| ribonuclease III [Nocardia brasiliensis ATCC 700358]
Length = 244
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 50/106 (47%), Gaps = 12/106 (11%)
Query: 149 LACDDFQEAIFLYAHVSMYLWDD----------GVFYKNVLHELSLREGLPVPLYETIKC 198
L Q I + V + L+DD G+ +K L E + GL VP YE
Sbjct: 138 LGAVHLQHGIDVARTVVLRLFDDLLERAAKMGAGLDWKTSLQEHTAEHGLGVPSYEITST 197
Query: 199 GAPHMPTFISMVEVDGEVFYGKA-GRTKKKAEMKAAKVAYTALIER 243
G H F + V G + YGK GR+KK+AE AA AYTAL ++
Sbjct: 198 GPDHDKEFTATAVVGG-LAYGKGVGRSKKEAEQNAAAAAYTALTQK 242
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QE + +P Y G DHD F ++ V GL++ V +S KE++ +AA
Sbjct: 174 WKTSLQEHTAEHGLGVPSYEITSTGPDHDKEFTATAVVGGLAYGKGVG-RSKKEAEQNAA 232
Query: 62 KLAFLHFTSPP 72
A+ T P
Sbjct: 233 AAAYTALTQKP 243
>gi|326776326|ref|ZP_08235591.1| ribonuclease III [Streptomyces griseus XylebKG-1]
gi|411004906|ref|ZP_11381235.1| ribonuclease III [Streptomyces globisporus C-1027]
gi|326656659|gb|EGE41505.1| ribonuclease III [Streptomyces griseus XylebKG-1]
Length = 274
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ E L VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 171 GLDWKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 230
Query: 232 AAKVAY 237
AA+ A+
Sbjct: 231 AAESAW 236
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 232
Query: 62 KLAF 65
+ A+
Sbjct: 233 ESAW 236
>gi|239991059|ref|ZP_04711723.1| ribonuclease III [Streptomyces roseosporus NRRL 11379]
gi|291448061|ref|ZP_06587451.1| ribonuclease III [Streptomyces roseosporus NRRL 15998]
gi|291351008|gb|EFE77912.1| ribonuclease III [Streptomyces roseosporus NRRL 15998]
Length = 274
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ E L VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 171 GLDWKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 230
Query: 232 AAKVAY 237
AA+ A+
Sbjct: 231 AAESAW 236
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 232
Query: 62 KLAF 65
+ A+
Sbjct: 233 ESAW 236
>gi|302525051|ref|ZP_07277393.1| ribonuclease III [Streptomyces sp. AA4]
gi|302433946|gb|EFL05762.1| ribonuclease III [Streptomyces sp. AA4]
Length = 246
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 36/71 (50%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ GL VP Y G H F + V V G G TKK+AE K
Sbjct: 167 GLDWKTSLQELTASGGLGVPEYRVEDSGPDHRKEFTATVLVAGRALGEGNGTTKKEAEQK 226
Query: 232 AAKVAYTALIE 242
AA+ A+ AL E
Sbjct: 227 AAETAWRALSE 237
>gi|182435701|ref|YP_001823420.1| ribonuclease III [Streptomyces griseus subsp. griseus NBRC 13350]
gi|178464217|dbj|BAG18737.1| putative ribonuclease III [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 274
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ E L VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 171 GLDWKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 230
Query: 232 AAKVAY 237
AA+ A+
Sbjct: 231 AAESAW 236
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 232
Query: 62 KLAF 65
+ A+
Sbjct: 233 ESAW 236
>gi|365861190|ref|ZP_09400967.1| ribonuclease III [Streptomyces sp. W007]
gi|364009341|gb|EHM30304.1| ribonuclease III [Streptomyces sp. W007]
Length = 238
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ E L VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 135 GLDWKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 194
Query: 232 AAKVAY 237
AA+ A+
Sbjct: 195 AAESAW 200
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 138 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 196
Query: 62 KLAF 65
+ A+
Sbjct: 197 ESAW 200
>gi|325000484|ref|ZP_08121596.1| RNAse III [Pseudonocardia sp. P1]
Length = 249
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%)
Query: 168 LWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKK 227
L G+ +K L EL+ G VP Y + G H+ F + V G AGRTKK+
Sbjct: 168 LLGAGLDWKTSLQELTAAGGHGVPEYRIDEEGPDHLKVFTATAVVGGRDLGSGAGRTKKE 227
Query: 228 AEMKAAKVAYTAL 240
AE KAA++A+ L
Sbjct: 228 AEQKAAELAWRTL 240
>gi|328951087|ref|YP_004368422.1| double-stranded RNA binding domain-containing protein
[Marinithermus hydrothermalis DSM 14884]
gi|328451411|gb|AEB12312.1| double-stranded RNA binding domain protein [Marinithermus
hydrothermalis DSM 14884]
Length = 158
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 186 EGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL----- 240
+GL P ++T G H P FIS V V+G V GRTK++AE AA++AY AL
Sbjct: 15 KGLAGPEFDTRGTGPEHDPLFISDVMVNGTVVATGQGRTKREAERIAAELAYEALKSTHG 74
Query: 241 -IERK 244
IERK
Sbjct: 75 EIERK 79
>gi|357410945|ref|YP_004922681.1| ribonuclease III [Streptomyces flavogriseus ATCC 33331]
gi|320008314|gb|ADW03164.1| ribonuclease III [Streptomyces flavogriseus ATCC 33331]
Length = 274
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ E L VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 171 GLDWKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 230
Query: 232 AAKVAY 237
AA+ A+
Sbjct: 231 AAESAW 236
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 232
Query: 62 KLAF 65
+ A+
Sbjct: 233 ESAW 236
>gi|229820101|ref|YP_002881627.1| ribonuclease III [Beutenbergia cavernae DSM 12333]
gi|229566014|gb|ACQ79865.1| ribonuclease III [Beutenbergia cavernae DSM 12333]
Length = 252
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L ELS GL PLY+ G H F + V + V+ G KK AE +
Sbjct: 168 GLDWKTSLQELSAELGLGAPLYDVDGVGPDHDRRFTAHVVIAERVWGSGTGSAKKHAEQE 227
Query: 232 AAKVAYTALIE 242
AA+ AY AL E
Sbjct: 228 AARTAYAALRE 238
>gi|345002305|ref|YP_004805159.1| ribonuclease III [Streptomyces sp. SirexAA-E]
gi|344317931|gb|AEN12619.1| ribonuclease III [Streptomyces sp. SirexAA-E]
Length = 274
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ E L VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 171 GLDWKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 230
Query: 232 AAKVAY 237
AA+ A+
Sbjct: 231 AAESAW 236
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 174 WKTSLQELTASESLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 232
Query: 62 KLAF 65
+ A+
Sbjct: 233 ESAW 236
>gi|326382852|ref|ZP_08204542.1| ribonuclease III [Gordonia neofelifaecis NRRL B-59395]
gi|326198442|gb|EGD55626.1| ribonuclease III [Gordonia neofelifaecis NRRL B-59395]
Length = 234
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L ELS L P Y+ G H F ++ V G+ G+TKK+AE +
Sbjct: 161 GLDWKTSLQELSAERSLGQPQYQISSTGPDHNKEFTAVAVVGGDELGAGTGKTKKEAEQR 220
Query: 232 AAKVAYTALIER 243
AA++A+ AL E+
Sbjct: 221 AAELAWKALEEQ 232
>gi|242005452|ref|XP_002423579.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis]
gi|212506727|gb|EEB10841.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis]
Length = 409
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 14/144 (9%)
Query: 15 WSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSK-ESQNDAAKL--AFLHFTSP 71
W L Y K + FKS V SF+ K +K E D ++ AFL P
Sbjct: 268 WDLDSYCREKQKLLRELGFKSRRDVEP-SFNCEPRLKKAKLEEDKDVIRVSCAFLRSIFP 326
Query: 72 PPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFF 131
P K+ L +AR +NL+ P Y++ +E F++ VT++G + S +
Sbjct: 327 SDNDLP------KTKLLTWARHRNLEPPKYTTTQEDKL----FQSIVTVNGKNYGSSYWE 376
Query: 132 KNLKQAEHAAAKVALFSLACDDFQ 155
KN + AE +AA V L +L D +
Sbjct: 377 KNKRWAEQSAAIVGLVNLGLLDVE 400
>gi|331698524|ref|YP_004334763.1| ribonuclease 3 [Pseudonocardia dioxanivorans CB1190]
gi|326953213|gb|AEA26910.1| Ribonuclease 3 [Pseudonocardia dioxanivorans CB1190]
Length = 238
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ L VP Y + G H+ TF + V G GRTKK+AE K
Sbjct: 158 GLDWKTSLQELTAAAELGVPEYRITEDGPDHLKTFTATAVVGGRELGSGDGRTKKEAEQK 217
Query: 232 AAKVAYTAL 240
AA +A+ L
Sbjct: 218 AAALAWRTL 226
>gi|50840533|gb|AAT83200.1| ribonuclease III [Propionibacterium acnes KPA171202]
Length = 366
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G +K VL E G P YE + G H + + VDG + G KK+AE
Sbjct: 290 GTDWKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGRLHAAYTGHNKKEAEQG 349
Query: 232 AAKVAYTALI 241
AA+ A +ALI
Sbjct: 350 AARRAVSALI 359
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QE C + + PRY + G DH+ R+ + +V+G H++ + + KE++ AA
Sbjct: 293 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDG-RLHAAYTGHNKKEAEQGAA 351
Query: 62 KLAF 65
+ A
Sbjct: 352 RRAV 355
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+VLQ Y D+P Y + GP H + AR +DG + N K+AE AA
Sbjct: 293 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGR-LHAAYTGHNKKEAEQGAA 351
Query: 143 KVALFSL 149
+ A+ +L
Sbjct: 352 RRAVSAL 358
>gi|325971140|ref|YP_004247331.1| ribonuclease 3 [Sphaerochaeta globus str. Buddy]
gi|324026378|gb|ADY13137.1| Ribonuclease 3 [Sphaerochaeta globus str. Buddy]
Length = 248
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK L E + VP Y + K G H TF V+V+G+VF +G KK+AE AA
Sbjct: 176 YKTSLQEYMQKRWRKVPSYTLVRKTGPEHDFTFFVEVDVNGQVFGPASGANKKQAEQMAA 235
Query: 234 KVAYTALIE 242
K+AY L++
Sbjct: 236 KLAYDQLVK 244
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 2 YKTKVQELCHQKRW-SLPRYSTM-KDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQND 59
YKT +QE QKRW +P Y+ + K G +HD F V VNG F S + K+++
Sbjct: 176 YKTSLQEYM-QKRWRKVPSYTLVRKTGPEHDFTFFVEVDVNGQVF-GPASGANKKQAEQM 233
Query: 60 AAKLAFLHFTSP 71
AAKLA+ P
Sbjct: 234 AAKLAYDQLVKP 245
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
YK+ LQ Y +++ P Y+ +R+ GP H +F V ++G F N KQAE A
Sbjct: 176 YKTSLQEYMQKRWRKVPSYTLVRKTGPEHDFTFFVEVDVNGQVFGPAS-GANKKQAEQMA 234
Query: 142 AKVA 145
AK+A
Sbjct: 235 AKLA 238
>gi|395203526|ref|ZP_10394717.1| ribonuclease III [Propionibacterium humerusii P08]
gi|422439793|ref|ZP_16516613.1| ribonuclease III [Propionibacterium acnes HL037PA3]
gi|422471877|ref|ZP_16548368.1| ribonuclease III [Propionibacterium acnes HL037PA2]
gi|422573632|ref|ZP_16649193.1| ribonuclease III [Propionibacterium acnes HL044PA1]
gi|313836649|gb|EFS74363.1| ribonuclease III [Propionibacterium acnes HL037PA2]
gi|314928156|gb|EFS91987.1| ribonuclease III [Propionibacterium acnes HL044PA1]
gi|314972155|gb|EFT16252.1| ribonuclease III [Propionibacterium acnes HL037PA3]
gi|328907982|gb|EGG27742.1| ribonuclease III [Propionibacterium humerusii P08]
Length = 259
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G +K VL E G P YE + G H + + VDG + G KK+AE
Sbjct: 183 GTDWKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGRLHAAYTGHNKKEAEQG 242
Query: 232 AAKVAYTALI 241
AA+ A TAL+
Sbjct: 243 AARRAVTALM 252
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QE C + + PRY + G DH+ R+ + +V+G H++ + + KE++ AA
Sbjct: 186 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDG-RLHAAYTGHNKKEAEQGAA 244
Query: 62 KLA 64
+ A
Sbjct: 245 RRA 247
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+VLQ Y D+P Y + GP H + AR +DG + N K+AE AA
Sbjct: 186 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGR-LHAAYTGHNKKEAEQGAA 244
Query: 143 KVALFSL 149
+ A+ +L
Sbjct: 245 RRAVTAL 251
>gi|302036171|ref|YP_003796493.1| ribonuclease III [Candidatus Nitrospira defluvii]
gi|300604235|emb|CBK40567.1| Ribonuclease III [Candidatus Nitrospira defluvii]
Length = 234
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKT++QE+C ++ SLP+Y T+++ G DH+ F+ +++ G+ +S KE++ A
Sbjct: 167 YKTQLQEVCQKRYESLPQYETVRESGPDHEKVFEVELTIQGV-MRGIGRGRSKKEAEQMA 225
Query: 61 AKLAFLHF 68
AK A
Sbjct: 226 AKEALTQL 233
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
YK+ LQ +++ P Y ++RE GP H F+ +TI G + ++ K+AE A
Sbjct: 167 YKTQLQEVCQKRYESLPQYETVRESGPDHEKVFEVELTIQG-VMRGIGRGRSKKEAEQMA 225
Query: 142 AKVALFSLA 150
AK AL LA
Sbjct: 226 AKEALTQLA 234
>gi|300783718|ref|YP_003764009.1| ribonuclease III [Amycolatopsis mediterranei U32]
gi|384146954|ref|YP_005529770.1| ribonuclease III [Amycolatopsis mediterranei S699]
gi|399535602|ref|YP_006548264.1| ribonuclease III [Amycolatopsis mediterranei S699]
gi|299793232|gb|ADJ43607.1| ribonuclease III [Amycolatopsis mediterranei U32]
gi|340525108|gb|AEK40313.1| ribonuclease III [Amycolatopsis mediterranei S699]
gi|398316372|gb|AFO75319.1| ribonuclease III [Amycolatopsis mediterranei S699]
Length = 234
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ GL VP Y+ G H F + V V G AG TKK+AE K
Sbjct: 152 GLDWKTSLQELTASAGLGVPEYKVEDTGPDHRKEFTATVLVAGRPLGHGAGSTKKEAEQK 211
Query: 232 AAKVAYTAL 240
AA+ A+ +L
Sbjct: 212 AAETAWRSL 220
>gi|284032688|ref|YP_003382619.1| ribonuclease III [Kribbella flavida DSM 17836]
gi|283811981|gb|ADB33820.1| ribonuclease III [Kribbella flavida DSM 17836]
Length = 249
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL + G+ VP Y + G H TF + V + + + GR+KK+AE +
Sbjct: 167 GLDWKTSLQELVAQLGVGVPEYVIAESGPDHAKTFEARVRIGSDTYGHGIGRSKKEAEQQ 226
Query: 232 AAKVAYTAL 240
AA+ A+ AL
Sbjct: 227 AAETAWKAL 235
>gi|161621795|ref|YP_056158.2| ribonuclease III [Propionibacterium acnes KPA171202]
gi|335054114|ref|ZP_08546935.1| ribonuclease III [Propionibacterium sp. 434-HC2]
gi|387503830|ref|YP_005945059.1| ribonuclease III [Propionibacterium acnes 6609]
gi|333765479|gb|EGL42828.1| ribonuclease III [Propionibacterium sp. 434-HC2]
gi|335277875|gb|AEH29780.1| ribonuclease III [Propionibacterium acnes 6609]
Length = 246
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G +K VL E G P YE + G H + + VDG + G KK+AE
Sbjct: 170 GTDWKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGRLHAAYTGHNKKEAEQG 229
Query: 232 AAKVAYTALI 241
AA+ A +ALI
Sbjct: 230 AARRAVSALI 239
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QE C + + PRY + G DH+ R+ + +V+G H++ + + KE++ AA
Sbjct: 173 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDG-RLHAAYTGHNKKEAEQGAA 231
Query: 62 KLA 64
+ A
Sbjct: 232 RRA 234
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+VLQ Y D+P Y + GP H + AR +DG + N K+AE AA
Sbjct: 173 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGR-LHAAYTGHNKKEAEQGAA 231
Query: 143 KVALFSL 149
+ A+ +L
Sbjct: 232 RRAVSAL 238
>gi|422456219|ref|ZP_16532887.1| ribonuclease III [Propionibacterium acnes HL030PA1]
gi|422458756|ref|ZP_16535407.1| ribonuclease III [Propionibacterium acnes HL050PA2]
gi|315104262|gb|EFT76238.1| ribonuclease III [Propionibacterium acnes HL050PA2]
gi|315106730|gb|EFT78706.1| ribonuclease III [Propionibacterium acnes HL030PA1]
Length = 265
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G +K VL E G P YE + G H + + VDG + G KK+AE
Sbjct: 189 GTDWKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGRLHAAYTGHNKKEAEQG 248
Query: 232 AAKVAYTALI 241
AA+ A +ALI
Sbjct: 249 AARRAVSALI 258
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QE C + + PRY + G DH+ R+ + +V+G H++ + + KE++ AA
Sbjct: 192 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDG-RLHAAYTGHNKKEAEQGAA 250
Query: 62 KLA 64
+ A
Sbjct: 251 RRA 253
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+VLQ Y D+P Y + GP H + AR +DG + N K+AE AA
Sbjct: 192 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGR-LHAAYTGHNKKEAEQGAA 250
Query: 143 KVALFSL 149
+ A+ +L
Sbjct: 251 RRAVSAL 257
>gi|156717296|ref|NP_001096190.1| adenosine deaminase, RNA-specific, B1 [Xenopus (Silurana)
tropicalis]
gi|134024214|gb|AAI36175.1| LOC100124739 protein [Xenopus (Silurana) tropicalis]
Length = 719
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P FI VEV+G+VF G +G TKKKA++
Sbjct: 97 VLPKNALMQLNEIKPGLQYKLIS--QTGPVHAPVFIMTVEVNGQVFEG-SGPTKKKAKLN 153
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 154 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 191
>gi|428180344|gb|EKX49212.1| hypothetical protein GUITHDRAFT_105286 [Guillardia theta CCMP2712]
Length = 336
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 176 KNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKV 235
K L L R L +P+++T + G H P F V + + FYG TKK AE +A+K
Sbjct: 83 KGNLINLCTRNSLEMPVFKTTRAGPDHEPQFSCTVTIGQQTFYGSQQPTKKLAEKEASKQ 142
Query: 236 AYTALIE 242
A L E
Sbjct: 143 AVEGLFE 149
>gi|441519178|ref|ZP_21000876.1| ribonuclease III [Gordonia hirsuta DSM 44140 = NBRC 16056]
gi|441453956|dbj|GAC58837.1| ribonuclease III [Gordonia hirsuta DSM 44140 = NBRC 16056]
Length = 240
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ L VP Y+ G H F + V G GRTKK+AE K
Sbjct: 160 GLDWKTSLQELTAARSLGVPHYQITSTGPDHDKEFTAEAVVAGRALGAGVGRTKKEAEQK 219
Query: 232 AAKVAYTAL 240
AA +A++ L
Sbjct: 220 AAALAWSTL 228
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y G DHD F + V G + + V ++ KE++ AA
Sbjct: 163 WKTSLQELTAARSLGVPHYQITSTGPDHDKEFTAEAVVAGRALGAGVG-RTKKEAEQKAA 221
Query: 62 KLAF 65
LA+
Sbjct: 222 ALAW 225
>gi|348541265|ref|XP_003458107.1| PREDICTED: double-stranded RNA-specific editase B2-like
[Oreochromis niloticus]
Length = 1080
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 153 DFQEAIFLYAHVSMYLWDDGVFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVE 211
D +E + +H + GV KN L L+ LR GL + T K G H P F VE
Sbjct: 422 DGKEQLLYQSHSTCKRAAWGVTQKNALVHLNELRPGLQYDI--TSKTGPLHAPVFSVAVE 479
Query: 212 VDGEVFYGKAGRTKKKAEMKAAKVAYTALIE 242
V+G F G+ G TKK+A+M+AA+ A + I+
Sbjct: 480 VNGFHFEGR-GPTKKQAKMRAAEQALQSFIQ 509
>gi|417931381|ref|ZP_12574749.1| ribonuclease III [Propionibacterium acnes SK182B-JCVI]
gi|340776120|gb|EGR98170.1| ribonuclease III [Propionibacterium acnes SK182B-JCVI]
Length = 246
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QE C + + PRY + G DH+ R+ + +V+G H++ + + KE++ AA
Sbjct: 173 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDG-KLHAAYTGHNKKEAEQGAA 231
Query: 62 KLA 64
+LA
Sbjct: 232 RLA 234
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G +K VL E G P YE + G H + + VDG++ G KK+AE
Sbjct: 170 GTDWKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGKLHAAYTGHNKKEAEQG 229
Query: 232 AAKVAYTAL 240
AA++A AL
Sbjct: 230 AARLAVCAL 238
Score = 44.7 bits (104), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+VLQ Y D+P Y + GP H + AR +DG + N K+AE AA
Sbjct: 173 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDG-KLHAAYTGHNKKEAEQGAA 231
Query: 143 KVALFSLACD 152
++A+ +L D
Sbjct: 232 RLAVCALKPD 241
>gi|226185035|dbj|BAH33139.1| probable ribonuclease III [Rhodococcus erythropolis PR4]
Length = 257
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Query: 154 FQEAIFLYAHVSMYLWDD----------GVFYKNVLHELSLREGLPVPLYETIKCGAPHM 203
Q I V + L+DD G+ +K L EL+ G VP+YE G H
Sbjct: 142 LQHGIDTARRVVLDLFDDLLTRAPLLGAGLDWKTSLQELTAEHGAGVPVYEITATGPDHD 201
Query: 204 PTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE 242
F + V + + GR+KK+AE KAA A+ + E
Sbjct: 202 KEFTATVLISDKPLGVGVGRSKKEAEQKAASSAWKTMSE 240
>gi|302522137|ref|ZP_07274479.1| ribonuclease III [Streptomyces sp. SPB78]
gi|302431032|gb|EFL02848.1| ribonuclease III [Streptomyces sp. SPB78]
Length = 286
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 185 GLDWKTSLQELTAMEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 244
Query: 232 AAK 234
AA+
Sbjct: 245 AAE 247
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y ++G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 188 WKTSLQELTAMEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 246
Query: 62 K 62
+
Sbjct: 247 E 247
>gi|386856052|ref|YP_006260229.1| Double-stranded RNA binding protein [Deinococcus gobiensis I-0]
gi|379999581|gb|AFD24771.1| Double-stranded RNA binding protein [Deinococcus gobiensis I-0]
Length = 149
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 31/57 (54%)
Query: 187 GLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER 243
GL P++E G PH TF + V V GEV GR+KK AE AA+VA L R
Sbjct: 15 GLGTPVFEAEAEGPPHDRTFRAQVSVGGEVLGQGEGRSKKDAERAAAEVALRVLNGR 71
>gi|333024194|ref|ZP_08452258.1| putative ribonuclease III [Streptomyces sp. Tu6071]
gi|332744046|gb|EGJ74487.1| putative ribonuclease III [Streptomyces sp. Tu6071]
Length = 314
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 213 GLDWKTSLQELTAMEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 272
Query: 232 AAK 234
AA+
Sbjct: 273 AAE 275
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y ++G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 216 WKTSLQELTAMEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 274
Query: 62 K 62
+
Sbjct: 275 E 275
>gi|226374645|gb|ACO52474.1| RNA transcript variant a adenosine deaminase [Doryteuthis
opalescens]
Length = 786
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L+ ++ GL L + G H PTF VEV+GEVF G AG TKKKA+++AA+
Sbjct: 166 KNALMQLNEIKPGLEFQLMG--QTGPVHAPTFNMKVEVNGEVFEG-AGPTKKKAKLQAAE 222
Query: 235 VAYTALIE 242
A + ++
Sbjct: 223 KALRSFVQ 230
>gi|148272538|ref|YP_001222099.1| ribonuclease III [Clavibacter michiganensis subsp. michiganensis
NCPPB 382]
gi|147830468|emb|CAN01403.1| ribonuclease III [Clavibacter michiganensis subsp. michiganensis
NCPPB 382]
Length = 238
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%)
Query: 176 KNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKV 235
K L E + R+GLP P+Y+ G H F ++V V V G +KK+AEM AA
Sbjct: 168 KTALQESAARQGLPAPVYDVSDSGPDHSKRFHAVVTVGDAVRTTGEGSSKKQAEMTAALE 227
Query: 236 AYTALIER 243
A+T L R
Sbjct: 228 AWTRLEAR 235
>gi|318056548|ref|ZP_07975271.1| ribonuclease III [Streptomyces sp. SA3_actG]
gi|318076722|ref|ZP_07984054.1| ribonuclease III [Streptomyces sp. SA3_actF]
Length = 275
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 174 GLDWKTSLQELTAMEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 233
Query: 232 AAK 234
AA+
Sbjct: 234 AAE 236
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y ++G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 177 WKTSLQELTAMEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 235
Query: 62 K 62
+
Sbjct: 236 E 236
>gi|260800185|ref|XP_002595015.1| hypothetical protein BRAFLDRAFT_237436 [Branchiostoma floridae]
gi|229280255|gb|EEN51026.1| hypothetical protein BRAFLDRAFT_237436 [Branchiostoma floridae]
Length = 634
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN + +L+ L+ GL L + G PH P F+ VE++G+ F G+ GRTKK+A+++AA+
Sbjct: 19 KNAVMQLNELKPGLQYRLIS--QSGPPHAPEFVMSVEMNGQTFKGR-GRTKKEAKLRAAE 75
Query: 235 VAYTALIERK 244
+ ++ K
Sbjct: 76 QVLRSFVKSK 85
>gi|226374647|gb|ACO52475.1| RNA transcript variant b adenosine deaminase [Doryteuthis
opalescens]
Length = 687
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L+ ++ GL L + G H PTF VEV+GEVF G AG TKKKA+++AA+
Sbjct: 67 KNALMQLNEIKPGLEFQLMG--QTGPVHAPTFNMKVEVNGEVFEG-AGPTKKKAKLQAAE 123
Query: 235 VAYTALIE 242
A + ++
Sbjct: 124 KALRSFVQ 131
>gi|108804222|ref|YP_644159.1| RNAse III [Rubrobacter xylanophilus DSM 9941]
gi|108765465|gb|ABG04347.1| RNAse III [Rubrobacter xylanophilus DSM 9941]
Length = 233
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 175 YKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
+K +L E EGL P Y I K G PH P FIS V VDGE G + K++E AA
Sbjct: 152 WKTLLQETLQAEGLR-PTYRVISKQGPPHRPVFISGVSVDGEEVATGRGSSIKQSEQAAA 210
Query: 234 KVAYTALIERKL 245
+ A L R L
Sbjct: 211 RAALEILGVRPL 222
>gi|452953036|gb|EME58459.1| ribonuclease III [Amycolatopsis decaplanina DSM 44594]
Length = 248
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDG-EVFYGKAGRTKKKAEM 230
G+ +K L EL+ GL VP Y+ G H F + V V G E+ YG +G TKK+AE
Sbjct: 167 GLDWKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSATVLVGGRELGYG-SGTTKKEAEQ 225
Query: 231 KAAKVAYTAL 240
KAA+ A+ L
Sbjct: 226 KAAETAWRQL 235
>gi|410722568|ref|ZP_11361838.1| ribonuclease III [Methanobacterium sp. Maddingley MBC34]
gi|410596122|gb|EKQ50808.1| ribonuclease III [Methanobacterium sp. Maddingley MBC34]
Length = 217
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 175 YKNVLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK+ LHELS +EG + +Y+ +K G PH TF +DGE F G +KK+A+ AA
Sbjct: 152 YKSELHELSNKEGFCI-VYDLLKEKGEPHRKTFTIAALIDGENFGTGVGGSKKEAQQNAA 210
Query: 234 KVAYTAL 240
K A L
Sbjct: 211 KEALKNL 217
>gi|50954668|ref|YP_061956.1| ribonuclease III [Leifsonia xyli subsp. xyli str. CTCB07]
gi|81391047|sp|Q6AFJ4.1|RNC_LEIXX RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|50951150|gb|AAT88851.1| ribonuclease III [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 237
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%)
Query: 176 KNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKV 235
K L E + G P+Y I G H TF + V+V G V G +KK+AEM AA
Sbjct: 163 KTSLQEAAAHHGAGQPVYTVINTGPDHSKTFHATVDVGGLVTASGEGTSKKQAEMAAALS 222
Query: 236 AYTALIERK 244
A+TAL +
Sbjct: 223 AWTALTNHR 231
>gi|289426387|ref|ZP_06428130.1| ribonuclease III [Propionibacterium acnes SK187]
gi|289428762|ref|ZP_06430445.1| ribonuclease III [Propionibacterium acnes J165]
gi|295130991|ref|YP_003581654.1| ribonuclease III [Propionibacterium acnes SK137]
gi|335052636|ref|ZP_08545514.1| ribonuclease III [Propionibacterium sp. 409-HC1]
gi|342213540|ref|ZP_08706265.1| ribonuclease III [Propionibacterium sp. CC003-HC2]
gi|365963146|ref|YP_004944712.1| ribonuclease III [Propionibacterium acnes TypeIA2 P.acn31]
gi|365965386|ref|YP_004946951.1| ribonuclease III [Propionibacterium acnes TypeIA2 P.acn17]
gi|365974320|ref|YP_004955879.1| ribonuclease III [Propionibacterium acnes TypeIA2 P.acn33]
gi|386024412|ref|YP_005942717.1| ribonuclease III [Propionibacterium acnes 266]
gi|407935865|ref|YP_006851507.1| ribonuclease III [Propionibacterium acnes C1]
gi|417930209|ref|ZP_12573588.1| ribonuclease III [Propionibacterium acnes SK182]
gi|419421601|ref|ZP_13961829.1| ribonuclease III [Propionibacterium acnes PRP-38]
gi|289153115|gb|EFD01833.1| ribonuclease III [Propionibacterium acnes SK187]
gi|289158160|gb|EFD06380.1| ribonuclease III [Propionibacterium acnes J165]
gi|291376694|gb|ADE00549.1| ribonuclease III [Propionibacterium acnes SK137]
gi|332675870|gb|AEE72686.1| ribonuclease III [Propionibacterium acnes 266]
gi|333763102|gb|EGL40569.1| ribonuclease III [Propionibacterium sp. 409-HC1]
gi|340769084|gb|EGR91609.1| ribonuclease III [Propionibacterium sp. CC003-HC2]
gi|340772336|gb|EGR94840.1| ribonuclease III [Propionibacterium acnes SK182]
gi|365739827|gb|AEW84029.1| ribonuclease III [Propionibacterium acnes TypeIA2 P.acn31]
gi|365742067|gb|AEW81761.1| ribonuclease III [Propionibacterium acnes TypeIA2 P.acn17]
gi|365744319|gb|AEW79516.1| ribonuclease III [Propionibacterium acnes TypeIA2 P.acn33]
gi|379978092|gb|EIA11417.1| ribonuclease III [Propionibacterium acnes PRP-38]
gi|407904446|gb|AFU41276.1| ribonuclease III [Propionibacterium acnes C1]
gi|456738577|gb|EMF63144.1| ribonuclease III [Propionibacterium acnes FZ1/2/0]
Length = 246
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G +K VL E G P YE + G H + + VDG + G KK+AE
Sbjct: 170 GTDWKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGRLHAAYTGHNKKEAEQG 229
Query: 232 AAKVAYTALI 241
AA+ A +AL+
Sbjct: 230 AARRAVSALM 239
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QE C + + PRY + G DH+ R+ + +V+G H++ + + KE++ AA
Sbjct: 173 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDG-RLHAAYTGHNKKEAEQGAA 231
Query: 62 KLA 64
+ A
Sbjct: 232 RRA 234
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+VLQ Y D+P Y + GP H + AR +DG + N K+AE AA
Sbjct: 173 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGR-LHAAYTGHNKKEAEQGAA 231
Query: 143 KVALFSL 149
+ A+ +L
Sbjct: 232 RRAVSAL 238
>gi|422449682|ref|ZP_16526406.1| ribonuclease III [Propionibacterium acnes HL036PA3]
gi|422481390|ref|ZP_16557790.1| ribonuclease III [Propionibacterium acnes HL036PA1]
gi|422497109|ref|ZP_16573386.1| ribonuclease III [Propionibacterium acnes HL002PA3]
gi|422505414|ref|ZP_16581644.1| ribonuclease III [Propionibacterium acnes HL036PA2]
gi|422506917|ref|ZP_16583135.1| ribonuclease III [Propionibacterium acnes HL046PA2]
gi|422566757|ref|ZP_16642385.1| ribonuclease III [Propionibacterium acnes HL002PA2]
gi|313819677|gb|EFS57391.1| ribonuclease III [Propionibacterium acnes HL046PA2]
gi|313822217|gb|EFS59931.1| ribonuclease III [Propionibacterium acnes HL036PA1]
gi|313823550|gb|EFS61264.1| ribonuclease III [Propionibacterium acnes HL036PA2]
gi|314924611|gb|EFS88442.1| ribonuclease III [Propionibacterium acnes HL036PA3]
gi|314962025|gb|EFT06126.1| ribonuclease III [Propionibacterium acnes HL002PA2]
gi|315087196|gb|EFT59172.1| ribonuclease III [Propionibacterium acnes HL002PA3]
Length = 265
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G +K VL E G P YE + G H + + VDG + G KK+AE
Sbjct: 189 GTDWKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGRLHAAYTGHNKKEAEQG 248
Query: 232 AAKVAYTALI 241
AA+ A +AL+
Sbjct: 249 AARRAVSALM 258
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QE C + + PRY + G DH+ R+ + +V+G H++ + + KE++ AA
Sbjct: 192 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDG-RLHAAYTGHNKKEAEQGAA 250
Query: 62 KLA 64
+ A
Sbjct: 251 RRA 253
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+VLQ Y D+P Y + GP H + AR +DG + N K+AE AA
Sbjct: 192 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGR-LHAAYTGHNKKEAEQGAA 250
Query: 143 KVALFSL 149
+ A+ +L
Sbjct: 251 RRAVSAL 257
>gi|453364526|dbj|GAC79803.1| ribonuclease III [Gordonia malaquae NBRC 108250]
Length = 242
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL ++ P Y G DHD F ++ V G S V ++ KE++ +AA
Sbjct: 164 WKTSLQELSAERGTGQPHYQVTSTGPDHDKEFTATAVVAGRSLGEGVG-RTKKEAEQNAA 222
Query: 62 KLAFLHFTSPP 72
+A+ P
Sbjct: 223 AIAWRELDGDP 233
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L ELS G P Y+ G H F + V G GRTKK+AE
Sbjct: 161 GLDWKTSLQELSAERGTGQPHYQVTSTGPDHDKEFTATAVVAGRSLGEGVGRTKKEAEQN 220
Query: 232 AAKVAYTAL 240
AA +A+ L
Sbjct: 221 AAAIAWREL 229
>gi|195037815|ref|XP_001990356.1| GH18282 [Drosophila grimshawi]
gi|193894552|gb|EDV93418.1| GH18282 [Drosophila grimshawi]
Length = 833
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 6 VQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLA 64
+ EL + RW+ P+Y+ D G H F SV +NG S+ + SC + KE++ +AAKL
Sbjct: 764 LNELTSKNRWTPPQYTLRGDSGPSHSRMFLFSVEINGQSYTPAQSCNNKKEAKMNAAKLC 823
Query: 65 FLHFTSPPP 73
PP
Sbjct: 824 LRALGILPP 832
>gi|395845298|ref|XP_003795378.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
2 [Otolemur garnettii]
Length = 1136
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 16/164 (9%)
Query: 105 REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL----ACDDFQEAIFL 160
+EGPAH F+ V + TF ++ + K A+ AA+ A+ +L D Q +F
Sbjct: 585 KEGPAHDPKFQYCVAVGAQTFPTVSA-PSKKVAKQMAAEEAIKALHGEATSSDDQVGLFS 643
Query: 161 YAHVSMYLWDDGVFYKNV-----LHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGE 215
+ ++ ++ V Y N L E + G + G PH P F+ +V G
Sbjct: 644 CSKHTVRRINELVKYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGR 703
Query: 216 VFYGKAGRTKKKAEMKAAKVAYTALI------ERKLIFSLPFHG 253
F +KK+ + +AA A LI ER LP G
Sbjct: 704 WFPAVCAHSKKQGKQEAADAALRVLIGENEKAERMGFTELPLTG 747
>gi|295836307|ref|ZP_06823240.1| ribonuclease III [Streptomyces sp. SPB74]
gi|295825949|gb|EFG64564.1| ribonuclease III [Streptomyces sp. SPB74]
Length = 280
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 197 GLDWKTSLQELTAVEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 256
Query: 232 AAK 234
AA+
Sbjct: 257 AAE 259
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y ++G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 200 WKTSLQELTAVEGLGVPEYLVTEEGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 258
Query: 62 K 62
+
Sbjct: 259 E 259
>gi|354607788|ref|ZP_09025756.1| ribonuclease III [Propionibacterium sp. 5_U_42AFAA]
gi|422385608|ref|ZP_16465740.1| ribonuclease III [Propionibacterium acnes HL096PA3]
gi|422479950|ref|ZP_16556354.1| ribonuclease III [Propionibacterium acnes HL063PA1]
gi|422487459|ref|ZP_16563791.1| ribonuclease III [Propionibacterium acnes HL013PA2]
gi|422491427|ref|ZP_16567741.1| ribonuclease III [Propionibacterium acnes HL020PA1]
gi|422503314|ref|ZP_16579555.1| ribonuclease III [Propionibacterium acnes HL027PA2]
gi|422512831|ref|ZP_16588958.1| ribonuclease III [Propionibacterium acnes HL087PA2]
gi|422551118|ref|ZP_16626913.1| ribonuclease III [Propionibacterium acnes HL005PA3]
gi|422555477|ref|ZP_16631245.1| ribonuclease III [Propionibacterium acnes HL005PA2]
gi|313807892|gb|EFS46373.1| ribonuclease III [Propionibacterium acnes HL087PA2]
gi|313825876|gb|EFS63590.1| ribonuclease III [Propionibacterium acnes HL063PA1]
gi|314986461|gb|EFT30553.1| ribonuclease III [Propionibacterium acnes HL005PA2]
gi|314990820|gb|EFT34911.1| ribonuclease III [Propionibacterium acnes HL005PA3]
gi|315083515|gb|EFT55491.1| ribonuclease III [Propionibacterium acnes HL027PA2]
gi|327329789|gb|EGE71545.1| ribonuclease III [Propionibacterium acnes HL096PA3]
gi|327446474|gb|EGE93128.1| ribonuclease III [Propionibacterium acnes HL013PA2]
gi|328752230|gb|EGF65846.1| ribonuclease III [Propionibacterium acnes HL020PA1]
gi|353556334|gb|EHC25705.1| ribonuclease III [Propionibacterium sp. 5_U_42AFAA]
Length = 265
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G +K VL E G P YE + G H + + VDG + G KK+AE
Sbjct: 189 GTDWKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGRLHAAYTGHNKKEAEQG 248
Query: 232 AAKVAYTALI 241
AA+ A +AL+
Sbjct: 249 AARRAVSALM 258
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QE C + + PRY + G DH+ R+ + +V+G H++ + + KE++ AA
Sbjct: 192 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDG-RLHAAYTGHNKKEAEQGAA 250
Query: 62 KLA 64
+ A
Sbjct: 251 RRA 253
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+VLQ Y D+P Y + GP H + AR +DG + N K+AE AA
Sbjct: 192 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGR-LHAAYTGHNKKEAEQGAA 250
Query: 143 KVALFSL 149
+ A+ +L
Sbjct: 251 RRAVSAL 257
>gi|422387745|ref|ZP_16467856.1| ribonuclease III [Propionibacterium acnes HL096PA2]
gi|422393665|ref|ZP_16473715.1| ribonuclease III [Propionibacterium acnes HL099PA1]
gi|422395435|ref|ZP_16475475.1| ribonuclease III [Propionibacterium acnes HL097PA1]
gi|422425598|ref|ZP_16502532.1| ribonuclease III [Propionibacterium acnes HL043PA1]
gi|422427396|ref|ZP_16504312.1| ribonuclease III [Propionibacterium acnes HL087PA1]
gi|422432639|ref|ZP_16509508.1| ribonuclease III [Propionibacterium acnes HL059PA2]
gi|422434195|ref|ZP_16511055.1| ribonuclease III [Propionibacterium acnes HL083PA2]
gi|422438646|ref|ZP_16515484.1| ribonuclease III [Propionibacterium acnes HL092PA1]
gi|422444313|ref|ZP_16521108.1| ribonuclease III [Propionibacterium acnes HL002PA1]
gi|422451394|ref|ZP_16528097.1| ribonuclease III [Propionibacterium acnes HL030PA2]
gi|422453547|ref|ZP_16530243.1| ribonuclease III [Propionibacterium acnes HL087PA3]
gi|422462688|ref|ZP_16539310.1| ribonuclease III [Propionibacterium acnes HL038PA1]
gi|422473635|ref|ZP_16550109.1| ribonuclease III [Propionibacterium acnes HL056PA1]
gi|422477336|ref|ZP_16553769.1| ribonuclease III [Propionibacterium acnes HL007PA1]
gi|422485989|ref|ZP_16562346.1| ribonuclease III [Propionibacterium acnes HL043PA2]
gi|422491913|ref|ZP_16568223.1| ribonuclease III [Propionibacterium acnes HL086PA1]
gi|422495155|ref|ZP_16571444.1| ribonuclease III [Propionibacterium acnes HL025PA1]
gi|422499381|ref|ZP_16575645.1| ribonuclease III [Propionibacterium acnes HL063PA2]
gi|422510007|ref|ZP_16586158.1| ribonuclease III [Propionibacterium acnes HL059PA1]
gi|422516858|ref|ZP_16592966.1| ribonuclease III [Propionibacterium acnes HL110PA2]
gi|422517358|ref|ZP_16593458.1| ribonuclease III [Propionibacterium acnes HL074PA1]
gi|422521169|ref|ZP_16597201.1| ribonuclease III [Propionibacterium acnes HL045PA1]
gi|422522647|ref|ZP_16598668.1| ribonuclease III [Propionibacterium acnes HL053PA2]
gi|422525753|ref|ZP_16601754.1| ribonuclease III [Propionibacterium acnes HL083PA1]
gi|422528967|ref|ZP_16604942.1| ribonuclease III [Propionibacterium acnes HL053PA1]
gi|422530580|ref|ZP_16606539.1| ribonuclease III [Propionibacterium acnes HL110PA1]
gi|422536762|ref|ZP_16612665.1| ribonuclease III [Propionibacterium acnes HL078PA1]
gi|422540322|ref|ZP_16616191.1| ribonuclease III [Propionibacterium acnes HL013PA1]
gi|422542317|ref|ZP_16618169.1| ribonuclease III [Propionibacterium acnes HL037PA1]
gi|422544439|ref|ZP_16620277.1| ribonuclease III [Propionibacterium acnes HL082PA1]
gi|422547212|ref|ZP_16623034.1| ribonuclease III [Propionibacterium acnes HL050PA3]
gi|422548525|ref|ZP_16624337.1| ribonuclease III [Propionibacterium acnes HL050PA1]
gi|422557216|ref|ZP_16632961.1| ribonuclease III [Propionibacterium acnes HL025PA2]
gi|422560296|ref|ZP_16635986.1| ribonuclease III [Propionibacterium acnes HL005PA1]
gi|422563847|ref|ZP_16639519.1| ribonuclease III [Propionibacterium acnes HL046PA1]
gi|422571260|ref|ZP_16646853.1| ribonuclease III [Propionibacterium acnes HL067PA1]
gi|422579505|ref|ZP_16655027.1| ribonuclease III [Propionibacterium acnes HL005PA4]
gi|313763647|gb|EFS35011.1| ribonuclease III [Propionibacterium acnes HL013PA1]
gi|313773586|gb|EFS39552.1| ribonuclease III [Propionibacterium acnes HL074PA1]
gi|313794040|gb|EFS42064.1| ribonuclease III [Propionibacterium acnes HL110PA1]
gi|313801428|gb|EFS42679.1| ribonuclease III [Propionibacterium acnes HL110PA2]
gi|313811637|gb|EFS49351.1| ribonuclease III [Propionibacterium acnes HL083PA1]
gi|313813554|gb|EFS51268.1| ribonuclease III [Propionibacterium acnes HL025PA1]
gi|313816825|gb|EFS54539.1| ribonuclease III [Propionibacterium acnes HL059PA1]
gi|313829556|gb|EFS67270.1| ribonuclease III [Propionibacterium acnes HL063PA2]
gi|313831378|gb|EFS69092.1| ribonuclease III [Propionibacterium acnes HL007PA1]
gi|313834990|gb|EFS72704.1| ribonuclease III [Propionibacterium acnes HL056PA1]
gi|313839852|gb|EFS77566.1| ribonuclease III [Propionibacterium acnes HL086PA1]
gi|314914649|gb|EFS78480.1| ribonuclease III [Propionibacterium acnes HL005PA4]
gi|314919238|gb|EFS83069.1| ribonuclease III [Propionibacterium acnes HL050PA1]
gi|314920852|gb|EFS84683.1| ribonuclease III [Propionibacterium acnes HL050PA3]
gi|314930530|gb|EFS94361.1| ribonuclease III [Propionibacterium acnes HL067PA1]
gi|314957411|gb|EFT01514.1| ribonuclease III [Propionibacterium acnes HL002PA1]
gi|314963605|gb|EFT07705.1| ribonuclease III [Propionibacterium acnes HL082PA1]
gi|314968563|gb|EFT12661.1| ribonuclease III [Propionibacterium acnes HL037PA1]
gi|314974253|gb|EFT18349.1| ribonuclease III [Propionibacterium acnes HL053PA1]
gi|314976742|gb|EFT20837.1| ribonuclease III [Propionibacterium acnes HL045PA1]
gi|314984443|gb|EFT28535.1| ribonuclease III [Propionibacterium acnes HL005PA1]
gi|315079459|gb|EFT51452.1| ribonuclease III [Propionibacterium acnes HL053PA2]
gi|315081314|gb|EFT53290.1| ribonuclease III [Propionibacterium acnes HL078PA1]
gi|315095393|gb|EFT67369.1| ribonuclease III [Propionibacterium acnes HL038PA1]
gi|315099274|gb|EFT71250.1| ribonuclease III [Propionibacterium acnes HL059PA2]
gi|315100492|gb|EFT72468.1| ribonuclease III [Propionibacterium acnes HL046PA1]
gi|315109074|gb|EFT81050.1| ribonuclease III [Propionibacterium acnes HL030PA2]
gi|327328345|gb|EGE70107.1| ribonuclease III [Propionibacterium acnes HL096PA2]
gi|327334306|gb|EGE76020.1| ribonuclease III [Propionibacterium acnes HL097PA1]
gi|327444129|gb|EGE90783.1| ribonuclease III [Propionibacterium acnes HL043PA2]
gi|327444991|gb|EGE91645.1| ribonuclease III [Propionibacterium acnes HL043PA1]
gi|327451940|gb|EGE98594.1| ribonuclease III [Propionibacterium acnes HL092PA1]
gi|327455025|gb|EGF01680.1| ribonuclease III [Propionibacterium acnes HL087PA3]
gi|327457687|gb|EGF04342.1| ribonuclease III [Propionibacterium acnes HL083PA2]
gi|328755143|gb|EGF68759.1| ribonuclease III [Propionibacterium acnes HL087PA1]
gi|328758079|gb|EGF71695.1| ribonuclease III [Propionibacterium acnes HL025PA2]
gi|328760097|gb|EGF73676.1| ribonuclease III [Propionibacterium acnes HL099PA1]
Length = 265
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G +K VL E G P YE + G H + + VDG + G KK+AE
Sbjct: 189 GTDWKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGRLHAAYTGHNKKEAEQG 248
Query: 232 AAKVAYTALI 241
AA+ A +AL+
Sbjct: 249 AARRAVSALM 258
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QE C + + PRY + G DH+ R+ + +V+G H++ + + KE++ AA
Sbjct: 192 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDG-RLHAAYTGHNKKEAEQGAA 250
Query: 62 KLA 64
+ A
Sbjct: 251 RRA 253
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+VLQ Y D+P Y + GP H + AR +DG + N K+AE AA
Sbjct: 192 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGR-LHAAYTGHNKKEAEQGAA 250
Query: 143 KVALFSL 149
+ A+ +L
Sbjct: 251 RRAVSAL 257
>gi|386852253|ref|YP_006270266.1| ribonuclease III [Actinoplanes sp. SE50/110]
gi|359839757|gb|AEV88198.1| ribonuclease III [Actinoplanes sp. SE50/110]
Length = 245
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 37/69 (53%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
+K L EL+ GL VP Y G H TF + V V G + G GR+KK+AE +AA
Sbjct: 167 WKTSLQELTAALGLGVPDYVIEDSGPDHAKTFTAWVVVAGVRYGGSDGRSKKQAEQRAAA 226
Query: 235 VAYTALIER 243
A+ L ER
Sbjct: 227 AAWRMLTER 235
>gi|15529496|gb|AAL01305.1|AF403114_1 adenosine deaminase [Gallus gallus]
gi|15529504|gb|AAL01309.1| adenosine deaminase [Gallus gallus]
Length = 524
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 78 VLPKNALMQLNEIKPGLQYKLLS--QTGPVHAPVFVMAVEVNGQVFEG-SGPTKKKAKLH 134
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 135 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 172
>gi|422430651|ref|ZP_16507531.1| ribonuclease III [Propionibacterium acnes HL072PA2]
gi|422533756|ref|ZP_16609687.1| ribonuclease III [Propionibacterium acnes HL072PA1]
gi|314978880|gb|EFT22974.1| ribonuclease III [Propionibacterium acnes HL072PA2]
gi|315089369|gb|EFT61345.1| ribonuclease III [Propionibacterium acnes HL072PA1]
Length = 265
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G +K VL E G P YE + G H + + VDG + G KK+AE
Sbjct: 189 GTDWKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGRLHAAYTGHNKKEAEQG 248
Query: 232 AAKVAYTALI 241
AA+ A +AL+
Sbjct: 249 AARRAVSALM 258
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QE C + + PRY + G DH+ R+ + +V+G H++ + + KE++ AA
Sbjct: 192 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDG-RLHAAYTGHNKKEAEQGAA 250
Query: 62 KLA 64
+ A
Sbjct: 251 RRA 253
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+VLQ Y D+P Y + GP H + AR +DG + N K+AE AA
Sbjct: 192 WKTVLQEYCAEHGFDAPRYEIVGSGPDHNRRYCARANVDGR-LHAAYTGHNKKEAEQGAA 250
Query: 143 KVALFSL 149
+ A+ +L
Sbjct: 251 RRAVSAL 257
>gi|45383650|ref|NP_989571.1| RNA-specific adenosine deaminase B1 [Gallus gallus]
gi|161702982|ref|NP_001104544.1| RNA-specific adenosine deaminase B1 [Gallus gallus]
gi|15529498|gb|AAL01306.1|AF403115_1 adenosine deaminase [Gallus gallus]
gi|15529506|gb|AAL01310.1| adenosine deaminase [Gallus gallus]
gi|53127005|emb|CAG31002.1| hypothetical protein RCJMB04_1i12 [Gallus gallus]
Length = 701
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 78 VLPKNALMQLNEIKPGLQYKLLS--QTGPVHAPVFVMAVEVNGQVFEG-SGPTKKKAKLH 134
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 135 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 172
>gi|408791618|ref|ZP_11203228.1| ribonuclease III [Leptospira meyeri serovar Hardjo str. Went 5]
gi|408463028|gb|EKJ86753.1| ribonuclease III [Leptospira meyeri serovar Hardjo str. Went 5]
Length = 242
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKT +QE C +K LP YS MK +G DHD F SV + +F ++ K+ + ++ A
Sbjct: 173 YKTILQEFCQKKWKKLPEYSVMKEEGPDHDKEFLVSVVLEK-NFQATGEGKNKRRAEQMA 231
Query: 61 AKLAF 65
AK A
Sbjct: 232 AKAAL 236
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIR-EGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
YK++LQ + ++K P YS ++ EGP H F V ++ F++ KN ++AE A
Sbjct: 173 YKTILQEFCQKKWKKLPEYSVMKEEGPDHDKEFLVSVVLE-KNFQATGEGKNKRRAEQMA 231
Query: 142 AKVAL 146
AK AL
Sbjct: 232 AKAAL 236
>gi|375094027|ref|ZP_09740292.1| ribonuclease III [Saccharomonospora marina XMU15]
gi|374654760|gb|EHR49593.1| ribonuclease III [Saccharomonospora marina XMU15]
Length = 243
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ GL VP Y+ G H F ++V V G G TKK+AE K
Sbjct: 167 GLDWKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSAVVFVGGRDLGHGEGTTKKEAEQK 226
Query: 232 AAKVAYTALIE 242
AA+ A+ L E
Sbjct: 227 AAEFAWRELTE 237
>gi|291241464|ref|XP_002740631.1| PREDICTED: RNA-specific adenosine deaminase B1-like [Saccoglossus
kowalevskii]
Length = 713
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ +R GL + G H PTF+ VEV+G++F G G TKKKA+++
Sbjct: 92 VLPKNALMQLNEIRPGLQFKFVS--QSGPVHAPTFVMSVEVNGQMFEG-IGTTKKKAKLQ 148
Query: 232 AAKVAYTALIE 242
AA+ A + ++
Sbjct: 149 AAEKALRSFVQ 159
>gi|344306623|ref|XP_003421985.1| PREDICTED: double-stranded RNA-specific editase 1-like [Loxodonta
africana]
Length = 701
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P FI VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFIMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|15529500|gb|AAL01307.1|AF403116_1 adenosine deaminase [Gallus gallus]
gi|15529508|gb|AAL01311.1|AF403120_1 adenosine deaminase [Gallus gallus]
Length = 503
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 57 VLPKNALMQLNEIKPGLQYKLLS--QTGPVHAPVFVMAVEVNGQVFEG-SGPTKKKAKLH 113
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 114 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 151
>gi|373252029|ref|ZP_09540147.1| ribonuclease III [Nesterenkonia sp. F]
Length = 227
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QE+ + RY G DHD F ++++V G+++ SS + KS KE++ +AA
Sbjct: 146 WKTTIQEVAADRDLGDIRYVMEDSGPDHDKTFTATLTVGGVAY-SSGTGKSKKEAEREAA 204
Query: 62 KLAFLHFTS 70
+L T+
Sbjct: 205 RLTAATLTA 213
>gi|117928781|ref|YP_873332.1| ribonuclease III [Acidothermus cellulolyticus 11B]
gi|117649244|gb|ABK53346.1| RNAse III [Acidothermus cellulolyticus 11B]
Length = 246
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ + L VP Y+ + G H F + V + G V+ +G +KK+AE +
Sbjct: 167 GLDWKTSLQELTAAQHLGVPFYDLSERGPDHEKVFTAEVRIGGRVYGTGSGHSKKEAEQR 226
Query: 232 AAKVAY 237
AA+ A+
Sbjct: 227 AAQEAW 232
>gi|449507466|ref|XP_002192699.2| PREDICTED: double-stranded RNA-specific editase 1 [Taeniopygia
guttata]
Length = 699
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 76 VLPKNALMQLNEIKPGLQYKLLS--QTGPVHAPMFVMAVEVNGQVFEG-SGPTKKKAKLH 132
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 133 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 170
>gi|403251460|ref|ZP_10917800.1| dsRNA-specific ribonuclease [actinobacterium SCGC AAA027-L06]
gi|402915220|gb|EJX36203.1| dsRNA-specific ribonuclease [actinobacterium SCGC AAA027-L06]
Length = 212
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%)
Query: 176 KNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKV 235
K L EL+ LP P YE + G H +FI+ V E F G++K++AE AAK+
Sbjct: 141 KTALQELAASLNLPSPEYEISESGPDHDKSFIATALVGSERFETGQGKSKREAEQSAAKL 200
Query: 236 AYTALIER 243
A+ L R
Sbjct: 201 AHEHLSSR 208
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 3 KTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAK 62
KT +QEL P Y + G DHD F ++ V F + KS +E++ AAK
Sbjct: 141 KTALQELAASLNLPSPEYEISESGPDHDKSFIATALVGSERFETG-QGKSKREAEQSAAK 199
Query: 63 LAFLHFTS 70
LA H +S
Sbjct: 200 LAHEHLSS 207
>gi|170781177|ref|YP_001709509.1| ribonuclease III [Clavibacter michiganensis subsp. sepedonicus]
gi|169155745|emb|CAQ00866.1| ribonuclease III [Clavibacter michiganensis subsp. sepedonicus]
Length = 238
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%)
Query: 176 KNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKV 235
K L E + R+GLP P Y+ G H F ++V V V G +KK+AEM AA
Sbjct: 168 KTALQESAARQGLPAPAYDVSDSGPDHSKRFHAVVTVGDAVRTTGEGSSKKQAEMTAALE 227
Query: 236 AYTALIER 243
A+T L R
Sbjct: 228 AWTRLEAR 235
>gi|426393327|ref|XP_004062978.1| PREDICTED: double-stranded RNA-specific editase 1 [Gorilla gorilla
gorilla]
Length = 843
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 116 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 172
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 173 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 210
>gi|449496746|ref|XP_002191239.2| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase [Taeniopygia guttata]
Length = 552
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 14/138 (10%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSV------------- 48
Y TK+ C ++ L + G H P F V +NG + +
Sbjct: 5 YMTKINHYCQTRKLKLVYETVDMTGPSHYPEFTVVVKINGQKYGTGTGKSKKEAKAVAAK 64
Query: 49 -SCKSSKESQNDAAKLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREG 107
+ + +E Q A+ +A T+ P P Y L N+++R L + R G
Sbjct: 65 ETWEMIEEQQRSASNMAAAELTTSQPTSSPEQDENYVGRLNNFSQRTGLLVDYPNRNRTG 124
Query: 108 PAHACSFKARVTIDGHTF 125
HA ++ TI G+ +
Sbjct: 125 GDHAPTYTVSCTISGYVY 142
>gi|410584608|ref|ZP_11321710.1| ribonuclease III [Thermaerobacter subterraneus DSM 13965]
gi|410504194|gb|EKP93706.1| ribonuclease III [Thermaerobacter subterraneus DSM 13965]
Length = 284
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 176 KNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
K L ELS R GL P Y + P H P + V V G GR+KK AE +AA+
Sbjct: 202 KTALQELSRRLGLGEPTYRVVGAAGPEHDPRYTVEVRVGGRPLAQAVGRSKKVAEREAAR 261
Query: 235 VAYTALIE 242
+A L E
Sbjct: 262 MALAGLEE 269
>gi|313892793|ref|ZP_07826374.1| ribonuclease III [Veillonella sp. oral taxon 158 str. F0412]
gi|313442724|gb|EFR61135.1| ribonuclease III [Veillonella sp. oral taxon 158 str. F0412]
Length = 246
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 153 DFQEAI-FLYAHVSMYL-----WDDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPT 205
D+Q A+ F+ H+++Y+ G YK +L E R+G +Y + + G H T
Sbjct: 148 DYQTAMTFVLKHLTIYIKQALEGKRGNDYKTLLQEYVQRDGDKHIVYRLLSESGPDHAKT 207
Query: 206 FISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERK 244
F +VE++G + +G++KK AE AA++ L+ K
Sbjct: 208 FHIVVEINGVTYEAGSGKSKKIAEQHAAQLTLEKLMANK 246
>gi|15529502|gb|AAL01308.1|AF403117_1 adenosine deaminase [Gallus gallus]
gi|15529510|gb|AAL01312.1| adenosine deaminase [Gallus gallus]
Length = 680
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 57 VLPKNALMQLNEIKPGLQYKLLS--QTGPVHAPVFVMAVEVNGQVFEG-SGPTKKKAKLH 113
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 114 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 151
>gi|4379098|emb|CAB09392.1| RNA editing deaminase 1 [Homo sapiens]
Length = 699
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|397506717|ref|XP_003823866.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 3
[Pan paniscus]
Length = 729
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 105 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 161
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 162 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 199
>gi|359424778|ref|ZP_09215889.1| ribonuclease III [Gordonia amarae NBRC 15530]
gi|358239922|dbj|GAB05471.1| ribonuclease III [Gordonia amarae NBRC 15530]
Length = 274
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L ELS L P Y+ G H F + V GE GR+KK+AE K
Sbjct: 167 GLDWKTSLQELSSERELGPPQYQITSTGPDHDKEFTATAIVGGEEMGTGVGRSKKEAEQK 226
Query: 232 AAKVAYTALIER 243
AA +A+ L R
Sbjct: 227 AAALAWEELNNR 238
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL ++ P+Y G DHD F ++ V G + V +S KE++ AA
Sbjct: 170 WKTSLQELSSERELGPPQYQITSTGPDHDKEFTATAIVGGEEMGTGVG-RSKKEAEQKAA 228
Query: 62 KLAF 65
LA+
Sbjct: 229 ALAW 232
>gi|332256658|ref|XP_003277433.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 2
[Nomascus leucogenys]
Length = 729
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 105 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 161
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 162 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 199
>gi|21954729|gb|AAM83100.1|AF525422_1 adenosine deaminase ADAR2 [Homo sapiens]
gi|23266659|gb|AAN10291.1| adenosine deaminase [Homo sapiens]
Length = 729
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 105 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 161
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 162 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 199
>gi|395752918|ref|XP_003779505.1| PREDICTED: double-stranded RNA-specific editase 1 [Pongo abelii]
Length = 729
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 105 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 161
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 162 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 199
>gi|317121789|ref|YP_004101792.1| ribonuclease III [Thermaerobacter marianensis DSM 12885]
gi|315591769|gb|ADU51065.1| ribonuclease III [Thermaerobacter marianensis DSM 12885]
Length = 329
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 176 KNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
K L ELS R GL P Y I P H P + V V G GR+KK AE +AA+
Sbjct: 233 KTALQELSRRLGLGEPSYRVIDASGPEHDPRYTVEVRVGGRPLGQAVGRSKKVAEREAAR 292
Query: 235 VAYTALIE 242
+A L E
Sbjct: 293 IALADLEE 300
>gi|380792411|gb|AFE68081.1| double-stranded RNA-specific editase 1 isoform 2, partial [Macaca
mulatta]
Length = 475
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|119629762|gb|EAX09357.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform
CRA_a [Homo sapiens]
Length = 729
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 105 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 161
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 162 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 199
>gi|297287382|ref|XP_002803150.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 2
[Macaca mulatta]
Length = 740
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 116 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 172
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 173 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 210
>gi|355747317|gb|EHH51814.1| hypothetical protein EGM_12105 [Macaca fascicularis]
Length = 741
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|402862126|ref|XP_003895419.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 1 [Papio
anubis]
gi|355560227|gb|EHH16913.1| hypothetical protein EGK_13170 [Macaca mulatta]
Length = 741
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|239985458|ref|NP_001122104.2| RNA-specific adenosine deaminase B1 isoform 1 [Pan troglodytes]
gi|397506713|ref|XP_003823864.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 1
[Pan paniscus]
gi|410215246|gb|JAA04842.1| adenosine deaminase, RNA-specific, B1 [Pan troglodytes]
gi|410266404|gb|JAA21168.1| adenosine deaminase, RNA-specific, B1 [Pan troglodytes]
gi|410299376|gb|JAA28288.1| adenosine deaminase, RNA-specific, B1 [Pan troglodytes]
gi|410335023|gb|JAA36458.1| adenosine deaminase, RNA-specific, B1 [Pan troglodytes]
Length = 701
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|22506829|gb|AAM97654.1| adenosine deaminase ADAR2 variant [Homo sapiens]
Length = 701
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|7669477|ref|NP_056648.1| double-stranded RNA-specific editase 1 isoform 2 [Homo sapiens]
gi|2829669|sp|P78563.1|RED1_HUMAN RecName: Full=Double-stranded RNA-specific editase 1; AltName:
Full=RNA-editing deaminase 1; AltName: Full=RNA-editing
enzyme 1; AltName: Full=dsRNA adenosine deaminase
gi|1707502|emb|CAA67611.1| double-stranded RNA-specific editase [Homo sapiens]
gi|1766056|gb|AAB61687.1| double stranded RNA-specific editase 1 hRED1-L [Homo sapiens]
gi|2039300|gb|AAC51241.1| dsRNA adenosine deaminase DRADA2b [Homo sapiens]
gi|7717441|emb|CAB90493.1| human dsRNA adenosine deaminase DRADA2b, EC 3.5 [Homo sapiens]
gi|119629765|gb|EAX09360.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform
CRA_d [Homo sapiens]
Length = 741
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|7669479|ref|NP_056649.1| double-stranded RNA-specific editase 1 isoform 3 [Homo sapiens]
gi|2039302|gb|AAC51242.1| dsRNA adenosine deaminase DRADA2c [Homo sapiens]
gi|119629766|gb|EAX09361.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform
CRA_e [Homo sapiens]
Length = 714
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|395752916|ref|XP_003779504.1| PREDICTED: double-stranded RNA-specific editase 1 [Pongo abelii]
Length = 741
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|2114493|gb|AAB58300.1| RNA editase [Homo sapiens]
Length = 741
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|395752914|ref|XP_002830837.2| PREDICTED: double-stranded RNA-specific editase 1 isoform 2 [Pongo
abelii]
Length = 701
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|297287384|ref|XP_001118216.2| PREDICTED: double-stranded RNA-specific editase 1-like isoform 1
[Macaca mulatta]
gi|402862132|ref|XP_003895422.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 4 [Papio
anubis]
Length = 674
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|239985460|ref|NP_001155265.1| RNA-specific adenosine deaminase B1 isoform 3 [Pan troglodytes]
Length = 714
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|237681091|ref|NP_001153702.1| double-stranded RNA-specific editase 1 isoform 7 [Homo sapiens]
gi|71274097|dbj|BAE16329.1| adenosine deaminase acting on RNA type2d [Homo sapiens]
Length = 674
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|402862128|ref|XP_003895420.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 2 [Papio
anubis]
Length = 701
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|239985464|ref|NP_001155267.1| RNA-specific adenosine deaminase B1 isoform 4 [Pan troglodytes]
Length = 674
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|119629763|gb|EAX09358.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform
CRA_b [Homo sapiens]
Length = 700
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|195395490|ref|XP_002056369.1| GJ10909 [Drosophila virilis]
gi|194143078|gb|EDW59481.1| GJ10909 [Drosophila virilis]
Length = 851
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 6 VQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLA 64
+ EL + +W+ P+Y+ D G H F+ SV +NG ++ + C S KE++ +AAKL
Sbjct: 782 LNELTSKNKWTPPQYTLRDDSGPSHSRMFRFSVEINGQTYTPAQGCNSKKEAKLNAAKLC 841
Query: 65 FLHFTSPPP 73
PP
Sbjct: 842 LRALGILPP 850
>gi|402862130|ref|XP_003895421.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 3 [Papio
anubis]
Length = 714
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|332256664|ref|XP_003277436.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 5
[Nomascus leucogenys]
Length = 674
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|422446986|ref|ZP_16523724.1| ribonuclease III [Propionibacterium acnes HL027PA1]
gi|314954310|gb|EFS98716.1| ribonuclease III [Propionibacterium acnes HL027PA1]
Length = 265
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G +K VL E G P YE + G H + + VDG + G KK+AE
Sbjct: 189 GTDWKTVLQEYCAEHGFDAPRYEIVGFGPDHNRRYCARANVDGRLHAAYTGHNKKEAEQG 248
Query: 232 AAKVAYTALI 241
AA+ A +AL+
Sbjct: 249 AARRAVSALM 258
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QE C + + PRY + G DH+ R+ + +V+G H++ + + KE++ AA
Sbjct: 192 WKTVLQEYCAEHGFDAPRYEIVGFGPDHNRRYCARANVDG-RLHAAYTGHNKKEAEQGAA 250
Query: 62 KLA 64
+ A
Sbjct: 251 RRA 253
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+VLQ Y D+P Y + GP H + AR +DG + N K+AE AA
Sbjct: 192 WKTVLQEYCAEHGFDAPRYEIVGFGPDHNRRYCARANVDGR-LHAAYTGHNKKEAEQGAA 250
Query: 143 KVALFSL 149
+ A+ +L
Sbjct: 251 RRAVSAL 257
>gi|239985462|ref|NP_001155266.1| RNA-specific adenosine deaminase B1 isoform 2 [Pan troglodytes]
gi|397506715|ref|XP_003823865.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 2
[Pan paniscus]
Length = 741
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|4501919|ref|NP_001103.1| double-stranded RNA-specific editase 1 isoform 1 [Homo sapiens]
gi|1707504|emb|CAA67762.1| double-stranded RNA-specific editase [Homo sapiens]
gi|1766054|gb|AAB61686.1| double stranded RNA-specific editase 1 hRED1-S [Homo sapiens]
gi|2039298|gb|AAC51240.1| dsRNA adenosine deaminase DRADA2a [Homo sapiens]
gi|71274091|dbj|BAE16326.1| adenosine deaminase acting on RNA type2a [Homo sapiens]
gi|71274093|dbj|BAE16327.1| adenosine deaminase acting on RNA type2a [Homo sapiens]
gi|71274095|dbj|BAE16328.1| adenosine deaminase acting on RNA type2a [Homo sapiens]
gi|119629764|gb|EAX09359.1| adenosine deaminase, RNA-specific, B1 (RED1 homolog rat), isoform
CRA_c [Homo sapiens]
Length = 701
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|395645479|ref|ZP_10433339.1| ribonuclease III [Methanofollis liminatans DSM 4140]
gi|395442219|gb|EJG06976.1| ribonuclease III [Methanofollis liminatans DSM 4140]
Length = 235
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 5 KVQELCHQKRWSLPRYSTM-KDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKL 63
++QE Q+R LP Y + +DG DHDP F S+V+V G F + S S ++ +AA++
Sbjct: 168 RLQERLQQERLGLPEYLIVSRDGPDHDPTFVSAVTVAG-HFSAFGSGGSKAGAKKEAARV 226
Query: 64 AFLHFTSP 71
A +P
Sbjct: 227 ALEVLETP 234
>gi|163916108|gb|AAI57422.1| Double stranded RNA activated protein kinase 1 [Xenopus laevis]
Length = 578
Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 24/156 (15%)
Query: 107 GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL--------------ACD 152
GP+H F +V ++G + K K AE+ AAK+AL +L +
Sbjct: 30 GPSHDPRFTFQVFVNGEKLGEGQD-KKKKGAEYMAAKMALSTLKERENSAATVIQTTSEQ 88
Query: 153 DFQEAIFLYAH------VSMYLWDDGV--FYKNVLHELSLREGLPVPLYETIKCGAPHMP 204
D +FL ++ V + ++G Y +LHEL + L V + + G PH+P
Sbjct: 89 DSSSIVFLASNTGSPSAVCIGETENGCDENYVGILHELCQKHTLIVTFLDE-RHGQPHIP 147
Query: 205 TFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
F + E F G+ KK+A+ KAA +A +L
Sbjct: 148 EFFCKAVIGKEEFPKAKGKNKKEAKRKAAHLALISL 183
>gi|41351285|gb|AAH65545.1| Adenosine deaminase, RNA-specific, B1 (RED1 homolog rat) [Homo
sapiens]
Length = 701
Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|303248688|ref|ZP_07334942.1| ribonuclease III [Desulfovibrio fructosovorans JJ]
gi|302489944|gb|EFL49870.1| ribonuclease III [Desulfovibrio fructosovorans JJ]
Length = 233
Score = 45.1 bits (105), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 83 YKSVLQNYARRKNLDSPLYSSI-REGPAHACSFKARVTI-DGHTFESLEFFKNLKQAEHA 140
YKS LQ Y ++ + P+Y+ + EGP H F R+ + DGH ++E K++K+AE
Sbjct: 160 YKSRLQEYTQKVHKARPVYTLLDSEGPEHDKRFTVRLELPDGHALTAME--KSVKKAEQM 217
Query: 141 AAKVAL 146
AA++AL
Sbjct: 218 AARLAL 223
>gi|260835858|ref|XP_002612924.1| hypothetical protein BRAFLDRAFT_227842 [Branchiostoma floridae]
gi|229298306|gb|EEN68933.1| hypothetical protein BRAFLDRAFT_227842 [Branchiostoma floridae]
Length = 280
Score = 45.1 bits (105), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L+ LR GL + G H P FI VEV+G+ F G+ G TKKKA++ AA+
Sbjct: 39 KNALMQLNELRPGLQFKFVS--QSGPVHAPEFIMSVEVNGQTFEGRGG-TKKKAKLHAAE 95
Query: 235 VAYTALIE 242
A + ++
Sbjct: 96 QALRSFVQ 103
>gi|150021479|ref|YP_001306833.1| ribonuclease III [Thermosipho melanesiensis BI429]
gi|149794000|gb|ABR31448.1| Ribonuclease III [Thermosipho melanesiensis BI429]
Length = 231
Score = 45.1 bits (105), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 20/112 (17%)
Query: 132 KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVF-YKNVLHELSLREGLPV 190
KNLK E+ LFS D+ + ++L +F YK L EL+ + +
Sbjct: 133 KNLKLIEN------LFSKIFKDY---------IDIFLTGKRIFDYKTKLQELTQDKFKQL 177
Query: 191 PLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE 242
P+YET G FI+ ++++ +++ G +KK AE AAK+AY L E
Sbjct: 178 PVYETTTVGGK----FITTLKINNKIYSKAKGSSKKDAEKLAAKIAYEKLKE 225
>gi|432935587|ref|XP_004082035.1| PREDICTED: double-stranded RNA-specific editase 1-like [Oryzias
latipes]
Length = 744
Score = 45.1 bits (105), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G G TKKKA++
Sbjct: 123 VLPKNALMQLNEIKPGLQYKLLS--QTGPVHAPVFVMTVEVNGQVFEG-MGPTKKKAKLN 179
Query: 232 AAKVAYTALIE 242
AA+ A + ++
Sbjct: 180 AAEKALRSFVQ 190
>gi|297685923|ref|XP_002820521.1| PREDICTED: double-stranded RNA-specific editase B2-like, partial
[Pongo abelii]
Length = 345
Score = 45.1 bits (105), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 173 VFYKNVLHEL-SLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEM 230
V KN L +L LR GL Y T+ + G H P F VEV+G F G G TKKKA+M
Sbjct: 61 VAPKNALVQLHELRPGL---QYRTVSQTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKM 116
Query: 231 KAAKVAYTALIE 242
+AA++A + ++
Sbjct: 117 RAAELALRSFVQ 128
>gi|451337399|ref|ZP_21907944.1| Ribonuclease III [Amycolatopsis azurea DSM 43854]
gi|449419994|gb|EMD25505.1| Ribonuclease III [Amycolatopsis azurea DSM 43854]
Length = 248
Score = 45.1 bits (105), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDG-EVFYGKAGRTKKKAEM 230
G+ +K L EL+ GL VP Y+ G H F + V V G E+ YG +G TKK+AE
Sbjct: 167 GLDWKTSLQELTASAGLGVPEYKVEDTGPDHRKEFSATVLVGGRELGYG-SGTTKKEAEQ 225
Query: 231 KAAKVAYTAL 240
K+A+ A+ L
Sbjct: 226 KSAETAWRQL 235
>gi|390478277|ref|XP_003735462.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 2
[Callithrix jacchus]
Length = 701
Score = 45.1 bits (105), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|449663246|ref|XP_002168040.2| PREDICTED: uncharacterized protein LOC100200359 [Hydra
magnipapillata]
Length = 1809
Score = 45.1 bits (105), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 84/211 (39%), Gaps = 26/211 (12%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
YKT +Q+ C W LP Y+T + + + S VS + + S C +SK+ A
Sbjct: 1290 YKTSLQDYCQNTGWILPVYTT----SLGNTGWTSKVSFGKIHTYESAECGTSKQDAEQRA 1345
Query: 62 K------LAFLHFTS--------PPPPPPPNVQCRYKSVLQNYARRKNLDSPLY-SSIRE 106
L L F S P YK L ++ ++ ++ P + +SI E
Sbjct: 1346 AHAGLIGLGVLDFRSKYSDDTCIAVPGQGDGSFISYKCSLHDFCQQCSIQPPKFVTSIYE 1405
Query: 107 GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSM 166
+ + V + HTF ++ ++AE A VAL L D Q ++
Sbjct: 1406 N-----GYSSSVKVGQHTFNTVGRSSTSQEAEQKVAFVALQGLCMVDSQAVYDPLVCYTV 1460
Query: 167 YLWDDGVF--YKNVLHELSLREGLPVPLYET 195
D F +K+ LH+ R LP P Y T
Sbjct: 1461 PGPGDISFISFKSNLHDFCQRFVLPPPQYIT 1491
>gi|345793125|ref|XP_003433714.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
[Canis lupus familiaris]
Length = 570
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 114/278 (41%), Gaps = 44/278 (15%)
Query: 6 VQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLA 64
V EL R P+Y +K+ G H F +S+ ++ S S S K++Q A A
Sbjct: 13 VNELARFNRVQ-PQYKLLKERGPAHSKMFSVQLSLGEQTWESEGS--SIKKAQQAVANKA 69
Query: 65 FLHFTSPPP---PPPPNVQCRYKSV-----LQNYARRKNLDSPLYSSIREGPAHACSFKA 116
T P P PP NV S+ L A ++ + +Y + P +++A
Sbjct: 70 LTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRG-EPAIYRPL--DPKPFPNYRA 126
Query: 117 RVTIDGH-----------------TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQE 156
G T + EFF K + A H AA AL +L + E
Sbjct: 127 NYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPE 186
Query: 157 AIFLYAHVSMYLWDDGVFYKN---VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEV 212
+ DD K+ ++ E++L+ +PV +E IK G PHM +F++ V V
Sbjct: 187 KSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV 245
Query: 213 DGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLP 250
GE G +KK ++ +A A T L E K + LP
Sbjct: 246 -GEFSAEGEGNSKKLSKKRA---ATTVLQELKKLPPLP 279
>gi|403271746|ref|XP_003927770.1| PREDICTED: double-stranded RNA-specific editase 1-like, partial
[Saimiri boliviensis boliviensis]
Length = 750
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 172 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 228
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 229 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 266
>gi|390478279|ref|XP_002761540.2| PREDICTED: double-stranded RNA-specific editase 1 isoform 1
[Callithrix jacchus]
Length = 782
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 116 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 172
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 173 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 210
>gi|296206058|ref|XP_002750047.1| PREDICTED: double-stranded RNA-specific editase B2 [Callithrix
jacchus]
Length = 998
Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 173 VFYKNVLHEL-SLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEM 230
V KN L +L LR GL Y T+ + G H P F VEV+G F G G TKKKA+M
Sbjct: 380 VAPKNALVQLHELRPGL---QYRTVSQTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKM 435
Query: 231 KAAKVAYTALIE 242
+AA++A + ++
Sbjct: 436 RAAELALRSFVQ 447
>gi|444513444|gb|ELV10323.1| Double-stranded RNA-specific editase 1 [Tupaia chinensis]
Length = 676
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 53 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 109
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 110 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 147
>gi|351707553|gb|EHB10472.1| Double-stranded RNA-specific editase 1 [Heterocephalus glaber]
Length = 744
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPCFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|74209845|dbj|BAE23623.1| unnamed protein product [Mus musculus]
Length = 376
Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYMLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|281337840|gb|EFB13424.1| hypothetical protein PANDA_016331 [Ailuropoda melanoleuca]
Length = 510
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 114/278 (41%), Gaps = 44/278 (15%)
Query: 6 VQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLA 64
V EL R P+Y +K+ G H F +S+ ++ S S S K++Q A A
Sbjct: 13 VNELARFNRVQ-PQYKLLKERGPAHSKMFSVQLSLGEQTWESEGS--SIKKAQQAVANKA 69
Query: 65 FLHFTSPPP---PPPPNVQCRYKSV-----LQNYARRKNLDSPLYSSIREGPAHACSFKA 116
T P P PP NV S+ L A ++ + +Y + P +++A
Sbjct: 70 LTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRG-EPAIYRPL--DPKPFPNYRA 126
Query: 117 RVTIDGH-----------------TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQE 156
G T + EFF K + A H AA AL +L + E
Sbjct: 127 NYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPE 186
Query: 157 AIFLYAHVSMYLWDDGVFYKN---VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEV 212
+ DD K+ ++ E++L+ +PV +E IK G PHM +F++ V V
Sbjct: 187 KSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV 245
Query: 213 DGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLP 250
GE G +KK ++ +A A T L E K + LP
Sbjct: 246 -GEFSAEGEGNSKKLSKKRA---ATTVLQELKKLPPLP 279
>gi|310689634|pdb|2L3J|A Chain A, The Solution Structure Of The Adar2 Dsrbm-Rna Complex
Reveals A Sequence-Specific Read Out Of The Minor Groove
Length = 236
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 4 VLPKNALMQLNEIKPGLQYMLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 60
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 61 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 98
>gi|164508752|emb|CAM07151.1| double-stranded RNA activated protein kinase [Danio rerio]
Length = 682
Score = 44.7 bits (104), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 95/250 (38%), Gaps = 36/250 (14%)
Query: 25 DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAF-----LHFTSPPPPPPPNV 79
DG H+ RF VNG F K+ KE++ +AAK A H P P P N+
Sbjct: 31 DGPSHNKRFTMRAIVNGQKFPDGTG-KTKKEAKQNAAKNALEGLKSTHSDEPTPSPVENI 89
Query: 80 QC-------RYKSVLQNYARRKNLDSPLYSSIREGPAH---ACSFKARVTIDGHTFESLE 129
Y L ++++ L S + P + C++ + D F
Sbjct: 90 SISKIASHPNYTCWLNEHSQKSRLMFKACESTKMDPGNLTRLCTYVCKYVCDDKEFPE-G 148
Query: 130 FFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMY-------------LWDDGVF-- 174
+ KN K+A+ AAA L E + ++ + + DD
Sbjct: 149 YGKNKKEAKEAAALRVYEELNKTQNTEVLDENSNRAQRSETTSYSLDRRSSVADDSRSST 208
Query: 175 ----YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEM 230
Y L+ ++ + G PH P F+ V +DG+ + GR+ K+A+
Sbjct: 209 PDNNYIAYLNNYCQKKKRVYDFKLVDRIGPPHNPIFVYKVVMDGKEYPEAQGRSAKEAKQ 268
Query: 231 KAAKVAYTAL 240
AA+ A++ +
Sbjct: 269 NAAQHAWSEI 278
>gi|341875742|gb|EGT31677.1| hypothetical protein CAEBREN_29495 [Caenorhabditis brenneri]
Length = 829
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 6 VQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAF 65
+ ELC ++RW P ++ GADH F +V +NG+ + K KE + AA++A
Sbjct: 754 IMELCAKRRWDPPAFTCEDSGADHMKLFIWTVVINGVEYRPMCGSKQKKEGKAVAAQVAL 813
Query: 66 LHFTSPPPPP 75
P P
Sbjct: 814 QSLGILPRDP 823
>gi|161377409|ref|NP_001104525.1| double-stranded RNA-specific editase 1 isoform 2 [Rattus
norvegicus]
gi|149043658|gb|EDL97109.1| adenosine deaminase, RNA-specific, B1, isoform CRA_c [Rattus
norvegicus]
Length = 701
Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYMLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|67625743|ref|NP_570965.2| double-stranded RNA-specific editase 1 isoform 1 [Mus musculus]
gi|15529488|gb|AAL01301.1|AF403106_1 adenosine deaminase [Mus musculus]
gi|148699869|gb|EDL31816.1| adenosine deaminase, RNA-specific, B1, isoform CRA_g [Mus musculus]
gi|183396845|gb|AAI65982.1| Adenosine deaminase, RNA-specific, B1 [synthetic construct]
Length = 701
Score = 44.7 bits (104), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYMLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|1710075|sp|P51400.1|RED1_RAT RecName: Full=Double-stranded RNA-specific editase 1; AltName:
Full=RNA-editing deaminase 1; AltName: Full=RNA-editing
enzyme 1; AltName: Full=dsRNA adenosine deaminase
gi|1177853|gb|AAA96755.1| double-stranded RNA-specific editase [Rattus norvegicus]
gi|1586827|prf||2204394A RNA-editing enzyme
Length = 711
Score = 44.7 bits (104), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYMLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|67625747|ref|NP_001020008.1| double-stranded RNA-specific editase 1 isoform 2 [Mus musculus]
gi|68684375|sp|Q91ZS8.1|RED1_MOUSE RecName: Full=Double-stranded RNA-specific editase 1; AltName:
Full=RNA-editing deaminase 1; AltName: Full=RNA-editing
enzyme 1; AltName: Full=dsRNA adenosine deaminase
gi|15529490|gb|AAL01302.1|AF403107_1 adenosine deaminase [Mus musculus]
gi|74181126|dbj|BAE27830.1| unnamed protein product [Mus musculus]
gi|74202480|dbj|BAE24831.1| unnamed protein product [Mus musculus]
gi|148699866|gb|EDL31813.1| adenosine deaminase, RNA-specific, B1, isoform CRA_d [Mus musculus]
Length = 711
Score = 44.7 bits (104), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYMLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|440895633|gb|ELR47776.1| Double-stranded RNA-binding protein Staufen-like protein 2, partial
[Bos grunniens mutus]
Length = 510
Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 114/278 (41%), Gaps = 44/278 (15%)
Query: 6 VQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLA 64
V EL R P+Y +K+ G H F +S+ ++ S S S K++Q A A
Sbjct: 13 VNELARFNRVQ-PQYKLLKERGPAHSKMFSVQLSLGEQTWESEGS--SIKKAQQAVANKA 69
Query: 65 FLHFTSPPP---PPPPNVQCRYKSV-----LQNYARRKNLDSPLYSSIREGPAHACSFKA 116
T P P PP NV S+ L A ++ + +Y + P +++A
Sbjct: 70 LTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRG-EPAIYRPL--DPKPFPNYRA 126
Query: 117 RVTIDGH-----------------TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQE 156
G T + EFF K + A H AA AL +L + E
Sbjct: 127 NYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPE 186
Query: 157 AIFLYAHVSMYLWDDGVFYKN---VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEV 212
+ DD K+ ++ E++L+ +PV +E IK G PHM +F++ V V
Sbjct: 187 KSAQNCESGKEMDDDKDANKSEISLVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV 245
Query: 213 DGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLP 250
GE G +KK ++ +A A T L E K + LP
Sbjct: 246 -GEFSAEGEGNSKKLSKKRA---ATTVLQELKKLPPLP 279
>gi|161377407|ref|NP_037026.2| double-stranded RNA-specific editase 1 isoform 1 [Rattus
norvegicus]
gi|149043657|gb|EDL97108.1| adenosine deaminase, RNA-specific, B1, isoform CRA_b [Rattus
norvegicus]
Length = 711
Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYMLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|13272337|gb|AAK17102.1|AF291049_1 RNA adenosine deaminase 2 [Mus musculus]
Length = 701
Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYMLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|426235642|ref|XP_004011789.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 1 [Ovis aries]
Length = 570
Score = 44.3 bits (103), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 114/278 (41%), Gaps = 44/278 (15%)
Query: 6 VQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLA 64
V EL R P+Y +K+ G H F +S+ ++ S S S K++Q A A
Sbjct: 13 VNELARFNRVQ-PQYKLLKERGPAHSKMFSVQLSLGEQTWESEGS--SIKKAQQAVANKA 69
Query: 65 FLHFTSPPP---PPPPNVQCRYKSV-----LQNYARRKNLDSPLYSSIREGPAHACSFKA 116
T P P PP NV S+ L A ++ + +Y + P +++A
Sbjct: 70 LTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRG-EPAIYRPL--DPKPFPNYRA 126
Query: 117 RVTIDGH-----------------TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQE 156
G T + EFF K + A H AA AL +L + E
Sbjct: 127 NYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPE 186
Query: 157 AIFLYAHVSMYLWDDGVFYKN---VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEV 212
+ DD K+ ++ E++L+ +PV +E IK G PHM +F++ V V
Sbjct: 187 KSAQNCESGKEMDDDKDANKSEISLVFEIALKRNMPVS-FEVIKESGPPHMKSFVTRVSV 245
Query: 213 DGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLP 250
GE G +KK ++ +A A T L E K + LP
Sbjct: 246 -GEFSAEGEGNSKKLSKKRA---ATTVLQELKKLPPLP 279
>gi|148699867|gb|EDL31814.1| adenosine deaminase, RNA-specific, B1, isoform CRA_e [Mus musculus]
Length = 717
Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 83 VLPKNALMQLNEIKPGLQYMLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 139
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 140 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 177
>gi|149043656|gb|EDL97107.1| adenosine deaminase, RNA-specific, B1, isoform CRA_a [Rattus
norvegicus]
Length = 695
Score = 44.3 bits (103), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 71 VLPKNALMQLNEIKPGLQYMLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 127
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 128 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 165
>gi|444909584|ref|ZP_21229775.1| Ribonuclease III [Cystobacter fuscus DSM 2262]
gi|444720533|gb|ELW61317.1| Ribonuclease III [Cystobacter fuscus DSM 2262]
Length = 255
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKTK+QE ++ PRY + + G DH+ F+ VS+ G ++ + +S KE++ +A
Sbjct: 166 YKTKLQETAQEQLKVTPRYQCISEAGPDHEKVFEVQVSL-GPDVYARATGRSKKEAEQNA 224
Query: 61 AKLAFLHFTSPPPPPPPN 78
A A P PP+
Sbjct: 225 AHAALKWLARGEKPEPPD 242
>gi|384261139|ref|YP_005416325.1| RNAse III [Rhodospirillum photometricum DSM 122]
gi|378402239|emb|CCG07355.1| RNAse III [Rhodospirillum photometricum DSM 122]
Length = 252
Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 73 PPPPPNVQCRYKSVLQNYARRKNLDSPLY-SSIREGPAHACSFKARVTIDGHTFESLEFF 131
P PP + K+ LQ +A+ + L P Y REGPAH F RV++ GH E+
Sbjct: 175 PTPPRDA----KTALQEWAQGRGLPLPAYDEESREGPAHKPVFTVRVSVQGHGAEAAS-G 229
Query: 132 KNLKQAEHAAAKVALFSLACD 152
+ + AE AAA+ L L D
Sbjct: 230 PSKRIAEQAAARCLLERLTLD 250
>gi|27357042|gb|AAN86547.1| adenosine deaminase [Takifugu rubripes]
Length = 750
Score = 44.3 bits (103), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G++F G G TKKKA++
Sbjct: 126 VLPKNALMQLNEIKPGLQYKLLS--QTGPVHAPVFVMTVEVNGQIFEG-MGPTKKKAKLN 182
Query: 232 AAKVAYTALIE 242
AA+ A + ++
Sbjct: 183 AAEKALRSFVQ 193
>gi|309810296|ref|ZP_07704134.1| ribonuclease III [Dermacoccus sp. Ellin185]
gi|308435724|gb|EFP59518.1| ribonuclease III [Dermacoccus sp. Ellin185]
Length = 272
Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 31/66 (46%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
+K L E + GL P Y G H F + V VDG GR KK AEM AA+
Sbjct: 176 WKTSLQEATAAAGLGAPTYVVEGEGPDHDKVFTATVLVDGRTLGAGTGRNKKSAEMIAAE 235
Query: 235 VAYTAL 240
A+ +L
Sbjct: 236 NAWVSL 241
>gi|47220235|emb|CAF99000.1| unnamed protein product [Tetraodon nigroviridis]
Length = 810
Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G++F G G TKKKA++
Sbjct: 175 VLPKNALMQLNEIKPGLQYKLLS--QTGPVHAPVFVMTVEVNGQIFEG-MGPTKKKAKLN 231
Query: 232 AAKVAYTALIE 242
AA+ A + ++
Sbjct: 232 AAEKALRSFVQ 242
>gi|21954727|gb|AAM83099.1|AF525421_1 adenosine deaminase ADAR2 [Mus musculus]
gi|27357040|gb|AAN86546.1| adenosine deaminase [Mus musculus]
gi|148699863|gb|EDL31810.1| adenosine deaminase, RNA-specific, B1, isoform CRA_a [Mus musculus]
Length = 695
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 71 VLPKNALMQLNEIKPGLQYMLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 127
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 128 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 165
>gi|74096351|ref|NP_001027865.1| adenosine deaminase ADAR2-b variant [Takifugu rubripes]
gi|7798622|gb|AAF69765.1| double stranded RNA adenosine deaminase RED1B [Takifugu rubripes]
gi|22506833|gb|AAM97656.1| adenosine deaminase ADAR2-b variant [Takifugu rubripes]
Length = 698
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G++F G G TKKKA++
Sbjct: 74 VLPKNALMQLNEIKPGLQYKLLS--QTGPVHAPVFVMTVEVNGQIFEG-MGPTKKKAKLN 130
Query: 232 AAKVAYTALIE 242
AA+ A + ++
Sbjct: 131 AAEKALRSFVQ 141
>gi|148230009|ref|NP_001088561.1| adenosine deaminase, RNA-specific, B1 [Xenopus laevis]
gi|54648473|gb|AAH84960.1| LOC495438 protein [Xenopus laevis]
Length = 699
Score = 44.3 bits (103), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P FI VEV+G+ F G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYKLIS--QTGPVHAPVFIMTVEVNGQGFEG-SGPTKKKAKLN 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|397515135|ref|XP_003827815.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
editase B2 [Pan paniscus]
Length = 739
Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 176 KNVLHEL-SLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
KN L +L LR GL Y T+ + G H P F VEV+G F G G TKKKA+M+AA
Sbjct: 127 KNALVQLHELRPGLQ---YRTVSQTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAA 182
Query: 234 KVAYTALIE 242
++A + ++
Sbjct: 183 ELALRSFVQ 191
>gi|15529492|gb|AAL01303.1|AF403108_1 adenosine deaminase [Mus musculus]
gi|148699865|gb|EDL31812.1| adenosine deaminase, RNA-specific, B1, isoform CRA_c [Mus musculus]
Length = 677
Score = 44.3 bits (103), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 53 VLPKNALMQLNEIKPGLQYMLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 109
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 110 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 147
>gi|424866544|ref|ZP_18290379.1| Ribonuclease III [Leptospirillum sp. Group II 'C75']
gi|124515064|gb|EAY56575.1| ribonuclease III [Leptospirillum rubarum]
gi|387222846|gb|EIJ77248.1| Ribonuclease III [Leptospirillum sp. Group II 'C75']
Length = 247
Score = 44.3 bits (103), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTM-KDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKT +QE C ++ +LP Y M + G DH F +V + G + S KS KE++ A
Sbjct: 165 YKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRG-KIYGEGSGKSKKEAEQKA 223
Query: 61 AKLAF 65
AK A
Sbjct: 224 AKDAL 228
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK L E RE +P+Y+ + P H F V + G+++ +G++KK+AE KAA
Sbjct: 165 YKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGSGKSKKEAEQKAA 224
Query: 234 KVAYTAL 240
K A + L
Sbjct: 225 KDALSRL 231
>gi|402856396|ref|XP_003892776.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
3 [Papio anubis]
Length = 1181
Score = 44.3 bits (103), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 98/283 (34%), Gaps = 69/283 (24%)
Query: 24 KDGADHDPRFKSSVSVNGLSF--------------------------------------- 44
+ G H+PRFK V +NG F
Sbjct: 526 QSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKAMTILLEEAKAKDSGKSEESS 585
Query: 45 HSSVSCKSSKESQNDAAKLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSI 104
H S +S K +++ + F S P ++C +K L N + L
Sbjct: 586 HYSTEKESEKTTESQTPTPSATSFFSGKSPVTTLLECMHK--LGNSCEFRLLS------- 636
Query: 105 REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVAL--------FSLACDDFQE 156
+EGPAH F+ V + TF S+ + K A+ AA+ A+ S+ DD
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNSMTSDDQVR 695
Query: 157 AIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEV 216
I + YL + V L E + G + G PH P F+ +V G
Sbjct: 696 KI---GELVRYLNTNPV---GGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRW 749
Query: 217 FYGKAGRTKKKAEMKAAKVAYTALI------ERKLIFSLPFHG 253
F +KK+ + +AA A LI ER LP G
Sbjct: 750 FPAVCAHSKKQGKQEAADAALRVLIGENEKAERMGFTELPLTG 792
>gi|148699868|gb|EDL31815.1| adenosine deaminase, RNA-specific, B1, isoform CRA_f [Mus musculus]
Length = 707
Score = 44.3 bits (103), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 83 VLPKNALMQLNEIKPGLQYMLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 139
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 140 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 177
>gi|410479646|ref|YP_006767283.1| dsRNA-specific ribonuclease [Leptospirillum ferriphilum ML-04]
gi|406774898|gb|AFS54323.1| dsRNA-specific ribonuclease [Leptospirillum ferriphilum ML-04]
Length = 247
Score = 44.3 bits (103), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTM-KDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKT +QE C ++ +LP Y M + G DH F +V + G + S KS KE++ A
Sbjct: 165 YKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRG-KIYGEGSGKSKKEAEQKA 223
Query: 61 AKLAF 65
AK A
Sbjct: 224 AKDAL 228
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK L E RE +P+Y+ + P H F V + G+++ +G++KK+AE KAA
Sbjct: 165 YKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGSGKSKKEAEQKAA 224
Query: 234 KVAYTAL 240
K A + L
Sbjct: 225 KDALSRL 231
>gi|161377413|ref|NP_001104527.1| double-stranded RNA-specific editase 1 isoform 4 [Rattus
norvegicus]
gi|149043660|gb|EDL97111.1| adenosine deaminase, RNA-specific, B1, isoform CRA_e [Rattus
norvegicus]
Length = 677
Score = 44.3 bits (103), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 53 VLPKNALMQLNEIKPGLQYMLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 109
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 110 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 147
>gi|440684120|ref|YP_007158915.1| RNAse III [Anabaena cylindrica PCC 7122]
gi|428681239|gb|AFZ60005.1| RNAse III [Anabaena cylindrica PCC 7122]
Length = 228
Score = 44.3 bits (103), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 176 KNVLHELSLRE-GLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
KN E RE G P Y T + G P H P F++ V VDG+ + GR KK+AE AA
Sbjct: 155 KNRFQEWVQREIGANPPKYMTEQIGGPSHAPEFVAKVLVDGKEYGIGKGRNKKEAEKDAA 214
Query: 234 KVAYTALIERKLI 246
+ A L +R L+
Sbjct: 215 EDALAKLKKRGLL 227
>gi|15529494|gb|AAL01304.1|AF403109_1 adenosine deaminase [Mus musculus]
gi|148699864|gb|EDL31811.1| adenosine deaminase, RNA-specific, B1, isoform CRA_b [Mus musculus]
Length = 687
Score = 44.3 bits (103), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 53 VLPKNALMQLNEIKPGLQYMLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 109
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 110 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 147
>gi|161377411|ref|NP_001104526.1| double-stranded RNA-specific editase 1 isoform 3 [Rattus
norvegicus]
gi|149043659|gb|EDL97110.1| adenosine deaminase, RNA-specific, B1, isoform CRA_d [Rattus
norvegicus]
Length = 687
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 53 VLPKNALMQLNEIKPGLQYMLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 109
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 110 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 147
>gi|393766231|ref|ZP_10354787.1| ribonuclease III [Methylobacterium sp. GXF4]
gi|392728012|gb|EIZ85321.1| ribonuclease III [Methylobacterium sp. GXF4]
Length = 259
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 7/80 (8%)
Query: 176 KNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDG-EVFYGKAGRTKKKAEMKAA 233
K+ L E ++ LP+P+Y + + G H P F V+V+G E +G+ G +K+ AE +AA
Sbjct: 180 KSALQEWAMGRSLPIPVYAVVERTGPDHAPRFRIAVQVEGLEPGHGE-GTSKRVAEQEAA 238
Query: 234 KVAYTALIERKLIFSLPFHG 253
+ AL+ER+ I ++P G
Sbjct: 239 R----ALMEREGIGTVPETG 254
>gi|341876649|gb|EGT32584.1| hypothetical protein CAEBREN_18147 [Caenorhabditis brenneri]
Length = 804
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 6 VQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAF 65
+ ELC ++RW P ++ GADH F +V +NG+ + K KE + AA++A
Sbjct: 729 IMELCAKRRWDPPAFTCEDSGADHMKLFIWTVVINGVEYRPMCGSKQKKEGKAVAAQVAL 788
>gi|355562257|gb|EHH18851.1| Double-stranded RNA-specific editase B2 [Macaca mulatta]
Length = 614
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 176 KNVLHEL-SLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
KN L +L LR GL Y T+ + G H P F VEV+G F G G TKKKA+M+AA
Sbjct: 127 KNALVQLHELRPGLQ---YRTVSQTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAA 182
Query: 234 KVAYTALIE 242
++A + ++
Sbjct: 183 ELALRSFVQ 191
>gi|187950663|gb|AAI37478.1| Adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Homo
sapiens]
gi|187954983|gb|AAI40853.1| Adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Homo
sapiens]
Length = 739
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 176 KNVLHEL-SLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
KN L +L LR GL Y T+ + G H P F VEV+G F G G TKKKA+M+AA
Sbjct: 127 KNALVQLHELRPGLQ---YRTVSQTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAA 182
Query: 234 KVAYTALIE 242
++A + ++
Sbjct: 183 ELALRSFVQ 191
>gi|426363823|ref|XP_004049032.1| PREDICTED: double-stranded RNA-specific editase B2 [Gorilla gorilla
gorilla]
Length = 739
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 176 KNVLHEL-SLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
KN L +L LR GL Y T+ + G H P F VEV+G F G G TKKKA+M+AA
Sbjct: 127 KNALVQLHELRPGLQ---YRTVSQTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAA 182
Query: 234 KVAYTALIE 242
++A + ++
Sbjct: 183 ELALRSFVQ 191
>gi|354476792|ref|XP_003500607.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 1
[Cricetulus griseus]
gi|344241941|gb|EGV98044.1| Double-stranded RNA-specific editase 1 [Cricetulus griseus]
Length = 701
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G++F G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYMLLS--QTGPVHAPLFVMSVEVNGQIFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|326670793|ref|XP_687110.5| PREDICTED: double-stranded RNA-specific editase 1-like [Danio
rerio]
Length = 750
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G++F G +G TKKKA++
Sbjct: 125 VLPKNALMQLNEIKPGLQYKLLS--QTGPVHAPVFVMTVEVNGQLFEG-SGPTKKKAKLN 181
Query: 232 AAKVAYTALIE 242
AA+ A + ++
Sbjct: 182 AAEKALRSFVQ 192
>gi|297280147|ref|XP_002801844.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
isoform 3 [Macaca mulatta]
Length = 1180
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 98/283 (34%), Gaps = 69/283 (24%)
Query: 24 KDGADHDPRFKSSVSVNGLSF--------------------------------------- 44
+ G H+PRFK V +NG F
Sbjct: 525 QSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKAMTILLEEAKAKDSGKSEESS 584
Query: 45 HSSVSCKSSKESQNDAAKLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSI 104
H S +S K +++ + F S P ++C +K L N + L
Sbjct: 585 HYSTEKESEKTTESQTPTPSATSFFSGKSPVTTLLECMHK--LGNSCEFRLLS------- 635
Query: 105 REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVAL--------FSLACDDFQE 156
+EGPAH F+ V + TF S+ + K A+ AA+ A+ S+ DD
Sbjct: 636 KEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNSMTSDDQVR 694
Query: 157 AIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEV 216
I + YL + V L E + G + G PH P F+ +V G
Sbjct: 695 KI---GELVRYLNTNPV---GGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRW 748
Query: 217 FYGKAGRTKKKAEMKAAKVAYTALI------ERKLIFSLPFHG 253
F +KK+ + +AA A LI ER LP G
Sbjct: 749 FPAVCAHSKKQGKQEAADAALRVLIGENEKAERMGFTELPLTG 791
>gi|258652105|ref|YP_003201261.1| ribonuclease III [Nakamurella multipartita DSM 44233]
gi|258555330|gb|ACV78272.1| ribonuclease III [Nakamurella multipartita DSM 44233]
Length = 249
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 35/69 (50%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ GL VP Y + G H F + V + G GRTKK+AE
Sbjct: 161 GLDWKTSLQELAAERGLGVPEYRVSEEGPDHAKVFAARVLLSGSARGTGTGRTKKEAEQN 220
Query: 232 AAKVAYTAL 240
AA AYT L
Sbjct: 221 AAAAAYTGL 229
>gi|164508746|emb|CAM07148.1| double stranded RNA activated protein kinase 2 [Tetraodon
nigroviridis]
Length = 424
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
Y ++L+E + ++G + YE + C P H+ F V+G F AG+ K+ A+ KAA
Sbjct: 4 YISLLNEQAQKQGWSL-RYEDVGCDGPDHIKRFRVRAIVNGRAFPEGAGKNKRDAKHKAA 62
Query: 234 KVAYTALIERK 244
+ A+TAL++++
Sbjct: 63 ENAWTALMQQQ 73
>gi|8922077|ref|NP_061172.1| double-stranded RNA-specific editase B2 [Homo sapiens]
gi|33112436|sp|Q9NS39.1|RED2_HUMAN RecName: Full=Double-stranded RNA-specific editase B2; AltName:
Full=RNA-dependent adenosine deaminase 3; AltName:
Full=RNA-editing deaminase 2; AltName: Full=RNA-editing
enzyme 2; AltName: Full=dsRNA adenosine deaminase B2
gi|8650031|gb|AAF78094.1| double-stranded RNA specific adenosine deaminase [Homo sapiens]
gi|119606914|gb|EAW86508.1| adenosine deaminase, RNA-specific, B2 (RED2 homolog rat) [Homo
sapiens]
Length = 739
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 176 KNVLHEL-SLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
KN L +L LR GL Y T+ + G H P F VEV+G F G G TKKKA+M+AA
Sbjct: 127 KNALVQLHELRPGLQ---YRTVSQTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAA 182
Query: 234 KVAYTALIE 242
++A + ++
Sbjct: 183 ELALRSFVQ 191
>gi|402879494|ref|XP_003903372.1| PREDICTED: double-stranded RNA-specific editase B2 [Papio anubis]
Length = 724
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 176 KNVLHEL-SLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
KN L +L LR GL Y T+ + G H P F VEV+G F G G TKKKA+M+AA
Sbjct: 112 KNALVQLHELRPGLQ---YRTVSQTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAA 167
Query: 234 KVAYTALIE 242
++A + ++
Sbjct: 168 ELALRSFVQ 176
>gi|380804545|gb|AFE74148.1| double-stranded RNA-specific editase B2, partial [Macaca mulatta]
Length = 205
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 176 KNVLHEL-SLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
KN L +L LR GL Y T+ + G H P F VEV+G F G G TKKKA+M+AA
Sbjct: 126 KNALVQLHELRPGL---QYRTVSQTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAA 181
Query: 234 KVAYTALIE 242
++A + ++
Sbjct: 182 ELALRSFVQ 190
>gi|109088041|ref|XP_001118272.1| PREDICTED: double-stranded RNA-specific editase B2, partial [Macaca
mulatta]
Length = 504
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 176 KNVLHEL-SLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
KN L +L LR GL Y T+ + G H P F VEV+G F G G TKKKA+M+AA
Sbjct: 127 KNALVQLHELRPGL---QYRTVSQTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAA 182
Query: 234 KVAYTALIE 242
++A + ++
Sbjct: 183 ELALRSFVQ 191
>gi|354476794|ref|XP_003500608.1| PREDICTED: double-stranded RNA-specific editase 1 isoform 2
[Cricetulus griseus]
Length = 711
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G++F G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYMLLS--QTGPVHAPLFVMSVEVNGQIFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|348556433|ref|XP_003464026.1| PREDICTED: double-stranded RNA-specific editase 1, partial [Cavia
porcellus]
Length = 602
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPRFLMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIE 242
AA+ A + ++
Sbjct: 134 AAEKALRSFVQ 144
>gi|47226805|emb|CAG06647.1| unnamed protein product [Tetraodon nigroviridis]
Length = 678
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G++F G +G TKKKA++
Sbjct: 65 VLPKNALMQLNEIKPGLQYKLLS--QTGPVHAPVFVMSVEVNGQLFEG-SGPTKKKAKLN 121
Query: 232 AAKVAYTALIE 242
AA+ A + ++
Sbjct: 122 AAEKALRSFVQ 132
>gi|159036823|ref|YP_001536076.1| ribonuclease III [Salinispora arenicola CNS-205]
gi|157915658|gb|ABV97085.1| Ribonuclease III [Salinispora arenicola CNS-205]
Length = 252
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
+K L EL+ +GL VP Y G H+ TF + V V G+ + G GR+KK+AE +AA+
Sbjct: 168 WKTSLQELTAAQGLGVPEYRIEGTGPDHLKTFTAWVVVAGQRYGGAEGRSKKEAEQRAAE 227
Query: 235 VAYTALIER 243
A+ L E+
Sbjct: 228 AAWRTLTEQ 236
>gi|348542300|ref|XP_003458623.1| PREDICTED: double-stranded RNA-specific editase 1-like [Oreochromis
niloticus]
Length = 714
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
+ KN L +L+ ++ GL L + G H P F+ VEV+G+VF G G TKKKA++
Sbjct: 89 ILPKNALMQLNEIKPGLQYKLLS--QTGPVHAPVFVMTVEVNGQVFEG-LGPTKKKAKLS 145
Query: 232 AAKVAYTALIE 242
AA+ A + ++
Sbjct: 146 AAEKALCSFVQ 156
>gi|327270557|ref|XP_003220056.1| PREDICTED: double-stranded RNA-specific editase 1-like [Anolis
carolinensis]
Length = 698
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+ F G +G TKKKA++
Sbjct: 76 VLPKNALMQLNEIKPGLQYKLIS--QTGPVHAPVFVMAVEVNGQAFEG-SGPTKKKAKLH 132
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 133 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 170
>gi|432098534|gb|ELK28243.1| Double-stranded RNA-specific editase 1 [Myotis davidii]
Length = 674
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA+++AA+
Sbjct: 79 KNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVISVEVNGQVFEG-SGPTKKKAKLQAAE 135
Query: 235 VAYTALIE 242
A + ++
Sbjct: 136 KALRSFVQ 143
>gi|294102050|ref|YP_003553908.1| ribonuclease III [Aminobacterium colombiense DSM 12261]
gi|293617030|gb|ADE57184.1| ribonuclease III [Aminobacterium colombiense DSM 12261]
Length = 240
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 147 FSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKC-GAPHMPT 205
F+ A + + +F ++++ Y D K+++ E + + GL P Y I G PHMP
Sbjct: 142 FAAAQNVVRRYLFFQSNINAY--DKNSDPKSLIQEETQKRGLGQPCYVVISTEGPPHMPI 199
Query: 206 FISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
F +++DG+++ G + K AE AA+ A
Sbjct: 200 FTVQLKIDGQLYGSGQGHSIKVAETLAAQRA 230
>gi|188585989|ref|YP_001917534.1| Ribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
gi|229564354|sp|B2A2N1.1|RNC_NATTJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|179350676|gb|ACB84946.1| Ribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 230
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKT +QEL + P+Y +K+ G DHD F + V +N S KS KE++ +A
Sbjct: 162 YKTMIQELVQDRYGDPPKYQIVKESGPDHDKSFVAEVQINN-EVVGRGSGKSKKEAEQNA 220
Query: 61 AKLAF 65
A AF
Sbjct: 221 AHFAF 225
>gi|70167032|ref|NP_056656.2| double-stranded RNA-specific adenosine deaminase isoform c [Homo
sapiens]
gi|119573570|gb|EAW53185.1| adenosine deaminase, RNA-specific, isoform CRA_c [Homo sapiens]
Length = 1181
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 99/283 (34%), Gaps = 69/283 (24%)
Query: 24 KDGADHDPRFKSSVSVNGLSF--------------------------------------- 44
+ G H+PRFK V +NG F
Sbjct: 526 QSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKAMTILLEEAKAKDSGKSEESS 585
Query: 45 HSSVSCKSSKESQNDAAKLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSI 104
H S +S K +++ + F S P ++C +K L N + L
Sbjct: 586 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHK--LGNSCEFRLLS------- 636
Query: 105 REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVAL--------FSLACDDFQE 156
+EGPAH F+ V + TF S+ + K A+ AA+ A+ S+A D+
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNSMASDNQVR 695
Query: 157 AIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEV 216
I + YL + V L E + G + G PH P F+ +V G
Sbjct: 696 KI---GELVRYLNTNPV---GGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRW 749
Query: 217 FYGKAGRTKKKAEMKAAKVAYTALI------ERKLIFSLPFHG 253
F +KK+ + +AA A LI ER LP G
Sbjct: 750 FPAVCAHSKKQGKQEAADAALRVLIGENEKAERMGFTELPLTG 792
>gi|2795790|gb|AAB97117.1| RNA adenosine deaminase [Homo sapiens]
Length = 1181
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 99/283 (34%), Gaps = 69/283 (24%)
Query: 24 KDGADHDPRFKSSVSVNGLSF--------------------------------------- 44
+ G H+PRFK V +NG F
Sbjct: 526 QSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKAMTILLEEAKAKDSGKSEESS 585
Query: 45 HSSVSCKSSKESQNDAAKLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSI 104
H S +S K +++ + F S P ++C +K L N + L
Sbjct: 586 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHK--LGNSCEFRLLS------- 636
Query: 105 REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVAL--------FSLACDDFQE 156
+EGPAH F+ V + TF S+ + K A+ AA+ A+ S+A D+
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNSMASDNQVR 695
Query: 157 AIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEV 216
I + YL + V L E + G + G PH P F+ +V G
Sbjct: 696 KI---GELVRYLNTNPV---GGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRW 749
Query: 217 FYGKAGRTKKKAEMKAAKVAYTALI------ERKLIFSLPFHG 253
F +KK+ + +AA A LI ER LP G
Sbjct: 750 FPAVCAHSKKQGKQEAADAALRVLIGENEKAERMGFTELPLTG 792
>gi|443673520|ref|ZP_21138582.1| Ribonuclease III [Rhodococcus sp. AW25M09]
gi|443413903|emb|CCQ16920.1| Ribonuclease III [Rhodococcus sp. AW25M09]
Length = 260
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 34/69 (49%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ L VP Y G H F + V V GR+KK+AE K
Sbjct: 176 GLDWKTSLQELTAERALGVPAYAIESTGPDHDKEFTATVLVGESPLGVGVGRSKKEAEQK 235
Query: 232 AAKVAYTAL 240
AA +A+ AL
Sbjct: 236 AASLAWNAL 244
Score = 41.2 bits (95), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL ++ +P Y+ G DHD F ++V V V +S KE++ AA
Sbjct: 179 WKTSLQELTAERALGVPAYAIESTGPDHDKEFTATVLVGESPLGVGVG-RSKKEAEQKAA 237
Query: 62 KLAF 65
LA+
Sbjct: 238 SLAW 241
>gi|206603814|gb|EDZ40294.1| Ribonuclease III [Leptospirillum sp. Group II '5-way CG']
Length = 247
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTM-KDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKT +QE C ++ +LP Y M + G DH F +V + G + S +S KE++ A
Sbjct: 165 YKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRG-KIYGEGSGRSKKEAEQKA 223
Query: 61 AKLAF 65
AK A
Sbjct: 224 AKDAL 228
Score = 41.2 bits (95), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK L E RE +P+Y+ + P H F V + G+++ +GR+KK+AE KAA
Sbjct: 165 YKTDLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGSGRSKKEAEQKAA 224
Query: 234 KVAYTAL 240
K A + L
Sbjct: 225 KDALSRL 231
>gi|395851269|ref|XP_003798187.1| PREDICTED: double-stranded RNA-specific editase 1 [Otolemur
garnettii]
Length = 1168
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 544 VLPKNALMQLNEVKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 600
Query: 232 AAKVAYTALIE 242
AA+ A + ++
Sbjct: 601 AAEKALRSFVQ 611
>gi|397679995|ref|YP_006521530.1| ribonuclease 3 [Mycobacterium massiliense str. GO 06]
gi|418247598|ref|ZP_12873984.1| ribonuclease III [Mycobacterium abscessus 47J26]
gi|420932371|ref|ZP_15395646.1| ribonuclease III [Mycobacterium massiliense 1S-151-0930]
gi|420935998|ref|ZP_15399267.1| ribonuclease III [Mycobacterium massiliense 1S-152-0914]
gi|420942630|ref|ZP_15405886.1| ribonuclease III [Mycobacterium massiliense 1S-153-0915]
gi|420946524|ref|ZP_15409774.1| ribonuclease III [Mycobacterium massiliense 1S-154-0310]
gi|420952891|ref|ZP_15416133.1| ribonuclease III [Mycobacterium massiliense 2B-0626]
gi|420957062|ref|ZP_15420297.1| ribonuclease III [Mycobacterium massiliense 2B-0107]
gi|420962648|ref|ZP_15425872.1| ribonuclease III [Mycobacterium massiliense 2B-1231]
gi|420993012|ref|ZP_15456158.1| ribonuclease III [Mycobacterium massiliense 2B-0307]
gi|420998786|ref|ZP_15461921.1| ribonuclease III [Mycobacterium massiliense 2B-0912-R]
gi|421003308|ref|ZP_15466430.1| ribonuclease III [Mycobacterium massiliense 2B-0912-S]
gi|353452091|gb|EHC00485.1| ribonuclease III [Mycobacterium abscessus 47J26]
gi|392137130|gb|EIU62867.1| ribonuclease III [Mycobacterium massiliense 1S-151-0930]
gi|392141513|gb|EIU67238.1| ribonuclease III [Mycobacterium massiliense 1S-152-0914]
gi|392147727|gb|EIU73445.1| ribonuclease III [Mycobacterium massiliense 1S-153-0915]
gi|392151804|gb|EIU77511.1| ribonuclease III [Mycobacterium massiliense 2B-0626]
gi|392153554|gb|EIU79260.1| ribonuclease III [Mycobacterium massiliense 1S-154-0310]
gi|392177568|gb|EIV03221.1| ribonuclease III [Mycobacterium massiliense 2B-0912-R]
gi|392179114|gb|EIV04766.1| ribonuclease III [Mycobacterium massiliense 2B-0307]
gi|392192011|gb|EIV17635.1| ribonuclease III [Mycobacterium massiliense 2B-0912-S]
gi|392245561|gb|EIV71038.1| ribonuclease III [Mycobacterium massiliense 2B-1231]
gi|392250893|gb|EIV76366.1| ribonuclease III [Mycobacterium massiliense 2B-0107]
gi|395458260|gb|AFN63923.1| Ribonuclease 3 [Mycobacterium massiliense str. GO 06]
Length = 258
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVN 40
+KT +QEL +K W P Y+ G DHD F ++V VN
Sbjct: 166 WKTSLQELTAEKGWGAPSYAVTSTGPDHDKEFTATVMVN 204
>gi|227488592|ref|ZP_03918908.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51867]
gi|227091486|gb|EEI26798.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51867]
Length = 250
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
+K +L E + LP+P YE G H F + +DG+V G KK AE AAK
Sbjct: 176 WKTLLQERAAERKLPMPEYEASFTGPDHDRFFTATAIIDGKVVGTGQGHNKKAAEQLAAK 235
Query: 235 VAYTALIERKL 245
A T L E+ +
Sbjct: 236 QAVTVLREQNI 246
>gi|169630337|ref|YP_001703986.1| ribonuclease III [Mycobacterium abscessus ATCC 19977]
gi|419709506|ref|ZP_14236974.1| ribonuclease III [Mycobacterium abscessus M93]
gi|420910874|ref|ZP_15374186.1| ribonuclease III [Mycobacterium abscessus 6G-0125-R]
gi|420917327|ref|ZP_15380630.1| ribonuclease III [Mycobacterium abscessus 6G-0125-S]
gi|420922492|ref|ZP_15385788.1| ribonuclease III [Mycobacterium abscessus 6G-0728-S]
gi|420928155|ref|ZP_15391435.1| ribonuclease III [Mycobacterium abscessus 6G-1108]
gi|420967762|ref|ZP_15430966.1| ribonuclease III [Mycobacterium abscessus 3A-0810-R]
gi|420978495|ref|ZP_15441672.1| ribonuclease III [Mycobacterium abscessus 6G-0212]
gi|420983878|ref|ZP_15447045.1| ribonuclease III [Mycobacterium abscessus 6G-0728-R]
gi|421008445|ref|ZP_15471555.1| ribonuclease III [Mycobacterium abscessus 3A-0119-R]
gi|421013851|ref|ZP_15476929.1| ribonuclease III [Mycobacterium abscessus 3A-0122-R]
gi|421018795|ref|ZP_15481852.1| ribonuclease III [Mycobacterium abscessus 3A-0122-S]
gi|421024330|ref|ZP_15487374.1| ribonuclease III [Mycobacterium abscessus 3A-0731]
gi|421030305|ref|ZP_15493336.1| ribonuclease III [Mycobacterium abscessus 3A-0930-R]
gi|421035409|ref|ZP_15498427.1| ribonuclease III [Mycobacterium abscessus 3A-0930-S]
gi|169242304|emb|CAM63332.1| Ribonuclease III Rnc [Mycobacterium abscessus]
gi|382943387|gb|EIC67701.1| ribonuclease III [Mycobacterium abscessus M93]
gi|392110218|gb|EIU35988.1| ribonuclease III [Mycobacterium abscessus 6G-0125-S]
gi|392112868|gb|EIU38637.1| ribonuclease III [Mycobacterium abscessus 6G-0125-R]
gi|392127145|gb|EIU52895.1| ribonuclease III [Mycobacterium abscessus 6G-0728-S]
gi|392129273|gb|EIU55020.1| ribonuclease III [Mycobacterium abscessus 6G-1108]
gi|392162773|gb|EIU88462.1| ribonuclease III [Mycobacterium abscessus 6G-0212]
gi|392168874|gb|EIU94552.1| ribonuclease III [Mycobacterium abscessus 6G-0728-R]
gi|392196593|gb|EIV22209.1| ribonuclease III [Mycobacterium abscessus 3A-0119-R]
gi|392200706|gb|EIV26311.1| ribonuclease III [Mycobacterium abscessus 3A-0122-R]
gi|392207425|gb|EIV33002.1| ribonuclease III [Mycobacterium abscessus 3A-0122-S]
gi|392211127|gb|EIV36693.1| ribonuclease III [Mycobacterium abscessus 3A-0731]
gi|392223525|gb|EIV49047.1| ribonuclease III [Mycobacterium abscessus 3A-0930-R]
gi|392223904|gb|EIV49425.1| ribonuclease III [Mycobacterium abscessus 3A-0930-S]
gi|392250269|gb|EIV75743.1| ribonuclease III [Mycobacterium abscessus 3A-0810-R]
Length = 258
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVN 40
+KT +QEL +K W P Y+ G DHD F ++V VN
Sbjct: 166 WKTSLQELTAEKGWGAPSYAVTSTGPDHDKEFTATVMVN 204
>gi|351711673|gb|EHB14592.1| Interferon-induced, double-stranded RNA-activated protein kinase
[Heterocephalus glaber]
Length = 525
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%)
Query: 174 FYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
FY L++ + G+ V E G PH F V +DG F GR+K+ A+ AA
Sbjct: 9 FYIEELNKYHQKNGVKVSYQELSVTGPPHSLLFTFQVTIDGRTFPEGKGRSKQDAKNAAA 68
Query: 234 KVAYTALIERKLIFS 248
K+A+ L + K + S
Sbjct: 69 KLAFDVLTQEKKVGS 83
Score = 37.7 bits (86), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 10/143 (6%)
Query: 107 GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSM 166
GP H+ F +VTIDG TF + ++ + A++AAAK+A L QE + SM
Sbjct: 34 GPPHSLLFTFQVTIDGRTFPEGK-GRSKQDAKNAAAKLAFDVLT----QEKKVGSSSSSM 88
Query: 167 Y--LWDDGVF--YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAG 222
++ F Y +++ ++ ++ L V YE F +++ +V+
Sbjct: 89 TKDTSEESAFGNYVGLVNRIAQKDKLSVN-YEQYDLREQGPRRFQCKCKIEQKVYGCGTA 147
Query: 223 RTKKKAEMKAAKVAYTALIERKL 245
TK+ A+ AAK+A+ + E KL
Sbjct: 148 STKQDAKQLAAKLAFDRISEEKL 170
>gi|119573569|gb|EAW53184.1| adenosine deaminase, RNA-specific, isoform CRA_b [Homo sapiens]
gi|119573574|gb|EAW53189.1| adenosine deaminase, RNA-specific, isoform CRA_b [Homo sapiens]
Length = 886
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 99/283 (34%), Gaps = 69/283 (24%)
Query: 24 KDGADHDPRFKSSVSVNGLSF--------------------------------------- 44
+ G H+PRFK V +NG F
Sbjct: 231 QSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKAMTILLEEAKAKDSGKSEESS 290
Query: 45 HSSVSCKSSKESQNDAAKLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSI 104
H S +S K +++ + F S P ++C +K L N + L
Sbjct: 291 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHK--LGNSCEFRLLS------- 341
Query: 105 REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVAL--------FSLACDDFQE 156
+EGPAH F+ V + TF S+ + K A+ AA+ A+ S+A D+
Sbjct: 342 KEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNSMASDNQVR 400
Query: 157 AIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEV 216
I + YL + V L E + G + G PH P F+ +V G
Sbjct: 401 KI---GELVRYLNTNPV---GGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRW 454
Query: 217 FYGKAGRTKKKAEMKAAKVAYTALI------ERKLIFSLPFHG 253
F +KK+ + +AA A LI ER LP G
Sbjct: 455 FPAVCAHSKKQGKQEAADAALRVLIGENEKAERMGFTELPLTG 497
>gi|92097709|gb|AAI15171.1| Adarb1 protein [Danio rerio]
Length = 233
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
+ KN L +L+ ++ GL L + G H P F+ VEV+G++F G +G TKKKA++
Sbjct: 93 ILPKNALMQLNEIKPGLQYKLLS--QTGPVHAPVFVMTVEVNGQLFEG-SGPTKKKAKLN 149
Query: 232 AAKVAYTALIE 242
AA+ A + ++
Sbjct: 150 AAEKALRSFVQ 160
>gi|426331795|ref|XP_004026879.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
3 [Gorilla gorilla gorilla]
Length = 1181
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 99/283 (34%), Gaps = 69/283 (24%)
Query: 24 KDGADHDPRFKSSVSVNGLSF--------------------------------------- 44
+ G H+PRFK V +NG F
Sbjct: 526 QSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKAMTILLEEAKAKDSGKSEESS 585
Query: 45 HSSVSCKSSKESQNDAAKLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSI 104
H S +S K +++ + F S P ++C +K L N + L
Sbjct: 586 HYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHK--LGNSCEFRLLS------- 636
Query: 105 REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVAL--------FSLACDDFQE 156
+EGPAH F+ V + TF S+ + K A+ AA+ A+ S+A D+
Sbjct: 637 KEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEASNSMASDNQVR 695
Query: 157 AIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEV 216
I + YL + V L E + G + G PH P F+ +V G
Sbjct: 696 KI---GELVRYLNTNPV---GGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRW 749
Query: 217 FYGKAGRTKKKAEMKAAKVAYTALI------ERKLIFSLPFHG 253
F +KK+ + +AA A LI ER LP G
Sbjct: 750 FPAVCAHSKKQGKQEAADAALRVLIGENEKAERMGFTELPLTG 792
>gi|386391878|ref|ZP_10076659.1| ribonuclease III [Desulfovibrio sp. U5L]
gi|385732756|gb|EIG52954.1| ribonuclease III [Desulfovibrio sp. U5L]
Length = 239
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 71 PPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSI-REGPAHACSFKARVTI-DGHTFESL 128
P P P + +KS LQ Y ++ + P+YS + EGP H F+ R+T+ DG ++
Sbjct: 150 PMRPAAPKTK-DFKSRLQEYTQKAHKSRPVYSLLGSEGPEHDKRFQVRLTLPDGQVITAV 208
Query: 129 EFFKNLKQAEHAAAKVALFSLA 150
E K++K+AE AA AL +L
Sbjct: 209 E--KSVKKAEQTAALRALEALG 228
>gi|419714448|ref|ZP_14241864.1| ribonuclease III [Mycobacterium abscessus M94]
gi|382945567|gb|EIC69861.1| ribonuclease III [Mycobacterium abscessus M94]
Length = 258
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVN 40
+KT +QEL +K W P Y+ G DHD F ++V VN
Sbjct: 166 WKTSLQELTAEKGWGAPSYAVTSTGPDHDKEFTATVMVN 204
>gi|284048724|ref|YP_003399063.1| ribonuclease III [Acidaminococcus fermentans DSM 20731]
gi|283952945|gb|ADB47748.1| ribonuclease III [Acidaminococcus fermentans DSM 20731]
Length = 234
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 168 LWDDGVF--YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRT 224
L DG+ YK L E+ ++G LY+ + P H TF+ V V+G GRT
Sbjct: 158 LTADGIDRDYKTRLQEVVQKDGPAEILYDQVSAEGPSHNRTFVMRVLVNGNELGKGRGRT 217
Query: 225 KKKAEMKAAKVAYTAL 240
KK+AE +AA+ A AL
Sbjct: 218 KKEAEQRAAREALKAL 233
>gi|149721312|ref|XP_001491884.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 1 [Equus caballus]
Length = 569
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 114/278 (41%), Gaps = 44/278 (15%)
Query: 6 VQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLA 64
V EL R P+Y +++ G H F +S+ ++ S S S K++Q A A
Sbjct: 13 VNELARFNRVQ-PQYKLLRERGPAHSKMFSVQLSLGEQTWESEGS--SIKKAQQAVANKA 69
Query: 65 FLHFTSPPP---PPPPNVQCRYKSV-----LQNYARRKNLDSPLYSSIREGPAHACSFKA 116
T P P PP NV S+ L A ++ + +Y + P +++A
Sbjct: 70 LTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRG-EPAIYRPL--DPKPFPNYRA 126
Query: 117 RVTIDGH-----------------TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQE 156
G T + EFF K + A H AA AL +L + E
Sbjct: 127 NYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPE 186
Query: 157 AIFLYAHVSMYLWDDGVFYKN---VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEV 212
+ DD K+ ++ E++L+ +PV +E IK G PHM +F++ V V
Sbjct: 187 KSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV 245
Query: 213 DGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLP 250
GE G +KK ++ +A A T L E K + LP
Sbjct: 246 -GEFSAEGEGNSKKLSKKRA---ATTVLQELKKLPPLP 279
>gi|420864682|ref|ZP_15328071.1| ribonuclease III [Mycobacterium abscessus 4S-0303]
gi|420869471|ref|ZP_15332853.1| ribonuclease III [Mycobacterium abscessus 4S-0726-RA]
gi|420873916|ref|ZP_15337292.1| ribonuclease III [Mycobacterium abscessus 4S-0726-RB]
gi|420990144|ref|ZP_15453300.1| ribonuclease III [Mycobacterium abscessus 4S-0206]
gi|421041577|ref|ZP_15504585.1| ribonuclease III [Mycobacterium abscessus 4S-0116-R]
gi|421044270|ref|ZP_15507270.1| ribonuclease III [Mycobacterium abscessus 4S-0116-S]
gi|392063398|gb|EIT89247.1| ribonuclease III [Mycobacterium abscessus 4S-0303]
gi|392065391|gb|EIT91239.1| ribonuclease III [Mycobacterium abscessus 4S-0726-RB]
gi|392068941|gb|EIT94788.1| ribonuclease III [Mycobacterium abscessus 4S-0726-RA]
gi|392184423|gb|EIV10074.1| ribonuclease III [Mycobacterium abscessus 4S-0206]
gi|392222505|gb|EIV48028.1| ribonuclease III [Mycobacterium abscessus 4S-0116-R]
gi|392233723|gb|EIV59221.1| ribonuclease III [Mycobacterium abscessus 4S-0116-S]
Length = 258
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVN 40
+KT +QEL +K W P Y+ G DHD F ++V VN
Sbjct: 166 WKTSLQELTAEKGWGAPSYAVTSTGPDHDKEFTATVMVN 204
>gi|365871183|ref|ZP_09410724.1| ribonuclease III [Mycobacterium massiliense CCUG 48898 = JCM 15300]
gi|414580756|ref|ZP_11437896.1| ribonuclease III [Mycobacterium abscessus 5S-1215]
gi|420878542|ref|ZP_15341909.1| ribonuclease III [Mycobacterium abscessus 5S-0304]
gi|420884584|ref|ZP_15347944.1| ribonuclease III [Mycobacterium abscessus 5S-0421]
gi|420891144|ref|ZP_15354491.1| ribonuclease III [Mycobacterium abscessus 5S-0422]
gi|420895543|ref|ZP_15358882.1| ribonuclease III [Mycobacterium abscessus 5S-0708]
gi|420902139|ref|ZP_15365470.1| ribonuclease III [Mycobacterium abscessus 5S-0817]
gi|420908414|ref|ZP_15371732.1| ribonuclease III [Mycobacterium abscessus 5S-1212]
gi|420973130|ref|ZP_15436322.1| ribonuclease III [Mycobacterium abscessus 5S-0921]
gi|421050261|ref|ZP_15513255.1| ribonuclease III [Mycobacterium massiliense CCUG 48898 = JCM 15300]
gi|363994986|gb|EHM16204.1| ribonuclease III [Mycobacterium massiliense CCUG 48898 = JCM 15300]
gi|392078404|gb|EIU04231.1| ribonuclease III [Mycobacterium abscessus 5S-0422]
gi|392080347|gb|EIU06173.1| ribonuclease III [Mycobacterium abscessus 5S-0421]
gi|392083451|gb|EIU09276.1| ribonuclease III [Mycobacterium abscessus 5S-0304]
gi|392094855|gb|EIU20650.1| ribonuclease III [Mycobacterium abscessus 5S-0708]
gi|392099500|gb|EIU25294.1| ribonuclease III [Mycobacterium abscessus 5S-0817]
gi|392106318|gb|EIU32104.1| ribonuclease III [Mycobacterium abscessus 5S-1212]
gi|392115908|gb|EIU41676.1| ribonuclease III [Mycobacterium abscessus 5S-1215]
gi|392164681|gb|EIU90369.1| ribonuclease III [Mycobacterium abscessus 5S-0921]
gi|392238864|gb|EIV64357.1| ribonuclease III [Mycobacterium massiliense CCUG 48898]
Length = 258
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVN 40
+KT +QEL +K W P Y+ G DHD F ++V VN
Sbjct: 166 WKTSLQELTAEKGWGAPSYAVTSTGPDHDKEFTATVMVN 204
>gi|391332367|ref|XP_003740607.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
2-like [Metaseiulus occidentalis]
Length = 669
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 10/137 (7%)
Query: 137 AEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETI 196
A H+AA+VAL L E VS DDG +V++E++L+ L V
Sbjct: 261 ARHSAAEVALAFLRSLPLPETTRKSVAVSEDEDDDGKSAISVVYEIALKRNLQVEFEVVN 320
Query: 197 KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLPFHGGRS 256
+CG PHM + + V G+V G KK ++ +AA+ K++ L G +
Sbjct: 321 ECGPPHMRKYTTRCTV-GDVSTEGTGNGKKISKKEAAE---------KMVIELKNSTGTT 370
Query: 257 CSIGSITHTVKADGVPN 273
++ + T T + N
Sbjct: 371 VNMMNATATNNSAATAN 387
>gi|384045183|ref|YP_005493200.1| Ribonuclease III [Bacillus megaterium WSH-002]
gi|345442874|gb|AEN87891.1| Ribonuclease III [Bacillus megaterium WSH-002]
Length = 248
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
+K+ L E+ R+G+ Y+ ++ P H F+S V ++GE GR+KK+AE KAA
Sbjct: 176 FKSQLQEVIQRDGVGQLEYKVLQEKGPAHNREFLSRVSLNGEELGVGVGRSKKEAEQKAA 235
Query: 234 KVAYTAL 240
+VA T +
Sbjct: 236 QVAITKI 242
>gi|294500965|ref|YP_003564665.1| ribonuclease III [Bacillus megaterium QM B1551]
gi|294350902|gb|ADE71231.1| ribonuclease III [Bacillus megaterium QM B1551]
Length = 248
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
+K+ L E+ R+G+ Y+ ++ P H F+S V ++GE GR+KK+AE KAA
Sbjct: 176 FKSQLQEVIQRDGVGQLEYKVLQEKGPAHNREFLSRVSLNGEELGVGVGRSKKEAEQKAA 235
Query: 234 KVAYTAL 240
+VA T +
Sbjct: 236 QVAITKI 242
>gi|227495870|ref|ZP_03926181.1| ribonuclease III [Actinomyces urogenitalis DSM 15434]
gi|226834547|gb|EEH66930.1| ribonuclease III [Actinomyces urogenitalis DSM 15434]
Length = 276
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ L P Y G H F ++ VDG+ G +KK AE
Sbjct: 171 GLDWKTSLQELAAVHRLGSPSYRVTSVGPDHARVFTAVAVVDGQERGEGTGSSKKVAEHD 230
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD-GVPNS 274
AA+ AY ++ L HG I T ++AD G+P
Sbjct: 231 AAEAAYASI--------LASHGDGGLEIPGATEALRADLGLPTG 266
>gi|63101747|gb|AAH95026.1| Adarb1 protein, partial [Danio rerio]
Length = 233
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
+ KN L +L+ ++ GL L + G H P F+ VEV+G++F G +G TKKKA++
Sbjct: 93 ILPKNALMQLNEIKPGLQYKLLS--QTGPVHAPVFVMTVEVNGQLFEG-SGPTKKKAKLN 149
Query: 232 AAKVAYTALIE 242
AA+ A + ++
Sbjct: 150 AAEKALRSFVQ 160
>gi|418421371|ref|ZP_12994545.1| ribonuclease III [Mycobacterium abscessus subsp. bolletii BD]
gi|363996451|gb|EHM17666.1| ribonuclease III [Mycobacterium abscessus subsp. bolletii BD]
Length = 280
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVN 40
+KT +QEL +K W P Y+ G DHD F ++V VN
Sbjct: 166 WKTSLQELTAEKGWGAPSYAVTSTGPDHDKEFTATVMVN 204
>gi|227543196|ref|ZP_03973245.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51866]
gi|227181005|gb|EEI61977.1| ribonuclease III [Corynebacterium glucuronolyticum ATCC 51866]
Length = 250
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
+K +L E + LP+P YE G H F + +DG+V G KK AE AAK
Sbjct: 176 WKTLLQERAAERKLPMPEYEASFTGPDHDRFFTATAIIDGKVVGTGQGHNKKAAEQLAAK 235
Query: 235 VAYTALIERKL 245
A T L E+ +
Sbjct: 236 QAVTVLREQNI 246
>gi|269797766|ref|YP_003311666.1| ribonuclease III [Veillonella parvula DSM 2008]
gi|282849040|ref|ZP_06258429.1| ribonuclease III [Veillonella parvula ATCC 17745]
gi|294791672|ref|ZP_06756820.1| ribonuclease III [Veillonella sp. 6_1_27]
gi|294793530|ref|ZP_06758667.1| ribonuclease III [Veillonella sp. 3_1_44]
gi|269094395|gb|ACZ24386.1| ribonuclease III [Veillonella parvula DSM 2008]
gi|282581315|gb|EFB86709.1| ribonuclease III [Veillonella parvula ATCC 17745]
gi|294455100|gb|EFG23472.1| ribonuclease III [Veillonella sp. 3_1_44]
gi|294456902|gb|EFG25264.1| ribonuclease III [Veillonella sp. 6_1_27]
Length = 246
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 153 DFQEAI-FLYAHVSMYLWD-----DGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPT 205
D+Q A+ F+ H++ Y+ G YK +L E R+G +Y + + G H T
Sbjct: 148 DYQTAMAFVLKHLTTYIMQALEGKRGKDYKTLLQEYVQRDGDKHIVYHLLSESGPDHAKT 207
Query: 206 FISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERK 244
F VE++G + +G++KK AE AA++ L+ K
Sbjct: 208 FHMEVEINGVTYEAGSGKSKKIAEQHAAQLTLEKLMADK 246
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
YK++LQ Y +R +Y + E GP HA +F V I+G T+E+ K+ K AE A
Sbjct: 176 YKTLLQEYVQRDGDKHIVYHLLSESGPDHAKTFHMEVEINGVTYEAGS-GKSKKIAEQHA 234
Query: 142 AKVALFSLACD 152
A++ L L D
Sbjct: 235 AQLTLEKLMAD 245
>gi|167555192|ref|NP_001107942.1| interferon-induced, double-stranded RNA-activated protein kinase
[Danio rerio]
gi|163879058|gb|ABY47905.1| IFN-stimulated dsRNA-activated eIF2-alpha kinase 2 [Danio rerio]
gi|164508750|emb|CAM07150.1| double-stranded RNA activated protein kinase [Danio rerio]
Length = 682
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 94/250 (37%), Gaps = 36/250 (14%)
Query: 25 DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAF-----LHFTSPPPPPPPNV 79
DG H+ RF VNG F K+ KE++ +AAK A H P P P N+
Sbjct: 31 DGPSHNKRFTMRAIVNGQKFPDGTG-KTKKEAKQNAAKNALEGLKSTHSDEPTPSPVENI 89
Query: 80 QC-------RYKSVLQNYARRKNLDSPLYSSIREGPAH---ACSFKARVTIDGHTFESLE 129
Y L ++++ L S + P + C++ + D F
Sbjct: 90 SVSKIASHPNYTCWLNEHSQKSRLMFKACESTKMDPGNLTRLCTYVCKYVCDDKEFPE-G 148
Query: 130 FFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMY-------------LWDDGVF-- 174
+ KN K+A+ AAA L E + ++ + + DD
Sbjct: 149 YGKNKKEAKEAAALRVYEELNKTPNTEVLDENSNRAQRSETTSYSLDRRSSVADDSRSST 208
Query: 175 ----YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEM 230
Y L+ ++ + G PH P F+ V +DG+ + GR K+A+
Sbjct: 209 PDNNYIAYLNNYCQKKKRVYDFKLVDRIGPPHNPIFVYKVVMDGKEYPEAQGRNAKEAKQ 268
Query: 231 KAAKVAYTAL 240
AA+ A++ +
Sbjct: 269 NAAQHAWSEI 278
>gi|374314927|ref|YP_005061355.1| ribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
gi|359350571|gb|AEV28345.1| ribonuclease III [Sphaerochaeta pleomorpha str. Grapes]
Length = 248
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 2 YKTKVQELCHQKRW-SLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQND 59
YKT +QE QKRW P Y+ +K G +HD F V VN LSF ++ KE++ +
Sbjct: 176 YKTSLQEYM-QKRWRKCPTYTLVKKTGPEHDFTFFVEVKVNDLSF-GPAKGRNKKEAEQN 233
Query: 60 AAKLAFLHFTSP 71
AAKLA+ P
Sbjct: 234 AAKLAYDSVVVP 245
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK L E + P Y +K G H TF V+V+ F GR KK+AE AA
Sbjct: 176 YKTSLQEYMQKRWRKCPTYTLVKKTGPEHDFTFFVEVKVNDLSFGPAKGRNKKEAEQNAA 235
Query: 234 KVAYTALI 241
K+AY +++
Sbjct: 236 KLAYDSVV 243
>gi|357632354|ref|ZP_09130232.1| ribonuclease III [Desulfovibrio sp. FW1012B]
gi|357580908|gb|EHJ46241.1| ribonuclease III [Desulfovibrio sp. FW1012B]
Length = 239
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 71 PPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSI-REGPAHACSFKARVTI-DGHTFESL 128
P P P + +KS LQ Y ++ + P+YS + EGP H F+ R+T+ DG ++
Sbjct: 150 PMRPAAPKTK-DFKSRLQEYTQKAHKSRPVYSLLGSEGPEHDKRFQVRLTLPDGQVITAV 208
Query: 129 EFFKNLKQAEHAAAKVALFSLA 150
E K++K+AE AA AL +L
Sbjct: 209 E--KSVKKAEQMAALRALEALG 228
>gi|161484666|ref|NP_571685.2| adenosine deaminase, RNA-specific, B1 [Danio rerio]
Length = 720
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
+ KN L +L+ ++ GL L + G H P F+ VEV+G++F G +G TKKKA++
Sbjct: 93 ILPKNALMQLNEIKPGLQYKLLS--QTGPVHAPVFVMTVEVNGQLFEG-SGPTKKKAKLN 149
Query: 232 AAKVAYTALIE 242
AA+ A + ++
Sbjct: 150 AAEKALRSFVQ 160
>gi|15593021|gb|AAL02181.1|AF403112_1 adenosine deaminase [Danio rerio]
gi|15593015|gb|AAL02179.1| adenosine deaminase [Danio rerio]
Length = 720
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
+ KN L +L+ ++ GL L + G H P F+ VEV+G++F G +G TKKKA++
Sbjct: 93 ILPKNALMQLNEIKPGLQYKLLS--QTGPVHAPVFVMTVEVNGQLFEG-SGPTKKKAKLN 149
Query: 232 AAKVAYTALIE 242
AA+ A + ++
Sbjct: 150 AAEKALRSFVQ 160
>gi|301767390|ref|XP_002919107.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 2
[Ailuropoda melanoleuca]
Length = 741
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++ AA+
Sbjct: 80 KNALMQLNEIKPGLQYALLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLHAAE 136
Query: 235 VAYTALIE 242
A + ++
Sbjct: 137 KALRSFVQ 144
>gi|7798624|gb|AAF69766.1| double-stranded RNA adenosine deaminase RED1A [Takifugu rubripes]
Length = 692
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
+ KN L +L+ ++ GL L + G H P F+ VEV+G++F G +G TKKKA++
Sbjct: 65 ILPKNALMQLNEIKPGLQYKLLS--QTGPVHAPVFVMSVEVNGQLFEG-SGPTKKKAKLN 121
Query: 232 AAKVAYTALIE 242
AA+ A + ++
Sbjct: 122 AAEKALRSFVQ 132
>gi|402592478|gb|EJW86406.1| hypothetical protein WUBG_02680 [Wuchereria bancrofti]
Length = 75
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 8 ELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAF 65
ELC +KRW P+++ ++ G ++ RF VNG+ + SV S K + A ++
Sbjct: 2 ELCSKKRWHAPQFTCLESGPSNNRRFLWKAVVNGVEYQPSVPSTSKKTGKAQACQVVL 59
>gi|416999129|ref|ZP_11939798.1| ribonuclease III [Veillonella parvula ACS-068-V-Sch12]
gi|333977282|gb|EGL78141.1| ribonuclease III [Veillonella parvula ACS-068-V-Sch12]
Length = 246
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 153 DFQEA-IFLYAHVSMYLWD-----DGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPT 205
D+Q A +F+ H++ Y+ G YK +L E R+G +Y + + G H T
Sbjct: 148 DYQTAMVFVLKHLTTYIMQALEGKRGKDYKTLLQEYVQRDGDKHIVYHLLSESGPDHDKT 207
Query: 206 FISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERK 244
F VE++G + +G++KK AE AA++ L+ K
Sbjct: 208 FHMEVEINGVTYEAGSGKSKKIAEQHAAQLTLEKLMADK 246
>gi|74136125|ref|NP_001027924.1| adenosine deaminase ADAR2-a variant [Takifugu rubripes]
gi|22506831|gb|AAM97655.1| adenosine deaminase ADAR2-a variant [Takifugu rubripes]
Length = 694
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
+ KN L +L+ ++ GL L + G H P F+ VEV+G++F G +G TKKKA++
Sbjct: 67 ILPKNALMQLNEIKPGLQYKLLS--QTGPVHAPVFVMSVEVNGQLFEG-SGPTKKKAKLN 123
Query: 232 AAKVAYTALIE 242
AA+ A + ++
Sbjct: 124 AAEKALRSFVQ 134
>gi|15593018|gb|AAL02180.1|AF403111_1 adenosine deaminase [Danio rerio]
gi|15593024|gb|AAL02182.1|AF403113_1 adenosine deaminase [Danio rerio]
Length = 689
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
+ KN L +L+ ++ GL L + G H P F+ VEV+G++F G +G TKKKA++
Sbjct: 62 ILPKNALMQLNEIKPGLQYKLLS--QTGPVHAPVFVMTVEVNGQLFEG-SGPTKKKAKLN 118
Query: 232 AAKVAYTALIE 242
AA+ A + ++
Sbjct: 119 AAEKALRSFVQ 129
>gi|417404003|gb|JAA48779.1| Putative trna-specific adenosine deaminase 1 [Desmodus rotundus]
Length = 701
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++ AA+
Sbjct: 80 KNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLHAAE 136
Query: 235 VAYTALIE 242
A + ++
Sbjct: 137 KALRSFVQ 144
>gi|348511509|ref|XP_003443286.1| PREDICTED: double-stranded RNA-specific editase 1-like [Oreochromis
niloticus]
Length = 747
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G++F G G TKKKA++
Sbjct: 123 VLPKNALMQLNEIKPGLQYKLLS--QTGPVHAPVFVMTVEVNGQMFEG-MGPTKKKAKLN 179
Query: 232 AAKVAYTALIE 242
AA+ A + ++
Sbjct: 180 AAEKALRSFVQ 190
>gi|328865213|gb|EGG13599.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 760
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 78 NVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQA 137
N+ K+ LQ Y ++ L P Y HA F +V + GH + SL + N K A
Sbjct: 2 NISDTAKNSLQEYCQKNKLTLPTYDVTTTCQDHAKKFMCKVKVQGHQYNSL-WMDNKKDA 60
Query: 138 EHAAAKVALFSLA 150
E AA VAL L+
Sbjct: 61 EKHAATVALVELS 73
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 3 KTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAK 62
K +QE C + + +LP Y DH +F V V G + +S+ + K+++ AA
Sbjct: 8 KNSLQEYCQKNKLTLPTYDVTTTCQDHAKKFMCKVKVQGHQY-NSLWMDNKKDAEKHAAT 66
Query: 63 LAFLHFTSPP-----PPPPPNVQCRYKSVLQNYARRKNLDS 98
+A + + PPP N+ + + L KN+D+
Sbjct: 67 VALVELSKGGHKRLMAPPPRNLSPSHDNQLA--VVTKNMDT 105
>gi|295706311|ref|YP_003599386.1| ribonuclease III [Bacillus megaterium DSM 319]
gi|294803970|gb|ADF41036.1| ribonuclease III [Bacillus megaterium DSM 319]
Length = 265
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 170 DDGVF-----YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGR 223
++G F +K+ L E+ R+G+ Y+ ++ P H F+S V ++GE GR
Sbjct: 183 NEGAFSHVMDFKSQLQEVIQRDGVGQLEYKVLQEKGPAHNREFLSRVSLNGEELGVGVGR 242
Query: 224 TKKKAEMKAAKVAYTAL 240
+KK+AE KAA+VA T +
Sbjct: 243 SKKEAEQKAAQVAITKI 259
>gi|301767388|ref|XP_002919106.1| PREDICTED: double-stranded RNA-specific editase 1-like isoform 1
[Ailuropoda melanoleuca]
Length = 701
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++ AA+
Sbjct: 80 KNALMQLNEIKPGLQYALLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLHAAE 136
Query: 235 VAYTALIE 242
A + ++
Sbjct: 137 KALRSFVQ 144
>gi|253699690|ref|YP_003020879.1| ribonuclease III [Geobacter sp. M21]
gi|251774540|gb|ACT17121.1| ribonuclease III [Geobacter sp. M21]
Length = 232
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 3 KTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
KT++QE + LPRY + G DHD RF V + G KS KE++ DAA
Sbjct: 163 KTELQEKARLVKGELPRYQLKEVSGPDHDKRFTVEVYL-GEELMGEGVGKSKKEAEQDAA 221
Query: 62 KLAFL 66
+ AFL
Sbjct: 222 RAAFL 226
>gi|410460645|ref|ZP_11314319.1| ribonuclease III [Bacillus azotoformans LMG 9581]
gi|409926699|gb|EKN63853.1| ribonuclease III [Bacillus azotoformans LMG 9581]
Length = 247
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 171 DGVF-----YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRT 224
+GVF YK+ L E+ R G Y I+ P H F+S V ++GE+ G++
Sbjct: 167 EGVFSHVMDYKSQLQEIVQRNGQGSLEYLIIQEKGPAHNREFVSRVALNGEILGTGVGKS 226
Query: 225 KKKAEMKAAKVAYTAL 240
KK+AE KAAK A L
Sbjct: 227 KKEAEQKAAKEALDEL 242
>gi|147906536|ref|NP_001091256.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Xenopus
laevis]
gi|121308150|emb|CAM07152.1| double stranded RNA activated protein kinase 1 [Xenopus laevis]
Length = 578
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 24/156 (15%)
Query: 107 GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL--------------ACD 152
GP+H F +V ++G + K K AE AAK+AL +L +
Sbjct: 30 GPSHDPRFTFQVFVNGEKLGEGQD-KKKKGAECMAAKMALSTLKERENSAATVIQTTSEQ 88
Query: 153 DFQEAIFLYAH------VSMYLWDDGV--FYKNVLHELSLREGLPVPLYETIKCGAPHMP 204
D +FL ++ V + ++G Y +LHEL + L V + + G PH+P
Sbjct: 89 DSSSIVFLASNTGSPSAVCIGETENGCDENYVGILHELCQKHTLIVTFLDE-RHGQPHIP 147
Query: 205 TFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
F + E F G+ KK+A+ KAA +A +L
Sbjct: 148 EFFCKAVIGKEEFPKAKGKNKKEAKRKAAHLALISL 183
>gi|345327639|ref|XP_001507858.2| PREDICTED: double-stranded RNA-specific editase 1-like
[Ornithorhynchus anatinus]
Length = 968
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+ F G G TKKKA++
Sbjct: 76 VLPKNALMQLNEIKPGLQYKLLS--QTGPVHAPMFVMAVEVNGQAFEG-TGPTKKKAKLH 132
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 133 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 170
>gi|335296679|ref|XP_003130894.2| PREDICTED: double-stranded RNA-specific editase B2-like [Sus
scrofa]
Length = 1000
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 173 VFYKNVLHEL-SLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEM 230
V KN L +L LR GL Y T+ + G H P F V+V+G F G G TKKKA+M
Sbjct: 390 VAPKNALVQLHELRPGL---QYRTVSQTGPVHAPVFAVAVDVNGLTFEG-TGPTKKKAKM 445
Query: 231 KAAKVAYTALIE 242
+AA++A + ++
Sbjct: 446 RAAELALRSFVQ 457
>gi|410969853|ref|XP_003991406.1| PREDICTED: double-stranded RNA-specific editase 1 [Felis catus]
Length = 701
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++ AA+
Sbjct: 80 KNALMQLNEIKPGLQYALLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLHAAE 136
Query: 235 VAYTALIE 242
A + ++
Sbjct: 137 KALRSFVQ 144
>gi|345795485|ref|XP_544931.3| PREDICTED: double-stranded RNA-specific editase 1 [Canis lupus
familiaris]
Length = 701
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++ AA+
Sbjct: 80 KNALMQLNEIKPGLQYALLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLHAAE 136
Query: 235 VAYTALIE 242
A + ++
Sbjct: 137 KALRSFVQ 144
>gi|330836489|ref|YP_004411130.1| RNAse III [Sphaerochaeta coccoides DSM 17374]
gi|329748392|gb|AEC01748.1| RNAse III [Sphaerochaeta coccoides DSM 17374]
Length = 256
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK +L E+ + P+YE ++ P H TF V V G +F +G KK+AE AA
Sbjct: 181 YKTLLQEIIQKRYHKYPVYELLRTSGPEHDRTFWVQVNVVGNIFGPASGANKKEAEQNAA 240
Query: 234 KVAYTAL 240
AY AL
Sbjct: 241 CAAYEAL 247
>gi|296229005|ref|XP_002760091.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
3 [Callithrix jacchus]
Length = 1181
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 99/287 (34%), Gaps = 77/287 (26%)
Query: 24 KDGADHDPRFKSSVSVNGLSF--------------------------------------- 44
+ G H+PRFK V +NG F
Sbjct: 526 QSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKAMTILLEEAKAKDSGKSEESS 585
Query: 45 HSSVSCKSSKESQNDAAKLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSI 104
H S +S K +++ + + F S P ++C +K L N + L
Sbjct: 586 HYSTEKESEKTAESQPSAPSATPFFSGKSPVTTLLECMHK--LGNSCEFRLLS------- 636
Query: 105 REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHV 164
+EGPAH F+ V + TF S+ A +K +A ++ +A+ A
Sbjct: 637 KEGPAHEPKFEYCVQVGAQTFPSVS----------APSKKVAKQMAAEEAMKALHGEATN 686
Query: 165 SMYLWDDGVF-------YKNV-----LHELSLREGLPVPLYETIKCGAPHMPTFISMVEV 212
SM L DD V Y N L E + G + G PH P F+ +V
Sbjct: 687 SM-LSDDQVRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKV 745
Query: 213 DGEVFYGKAGRTKKKAEMKAAKVAYTALI------ERKLIFSLPFHG 253
G F +KK+ + +AA A LI ER LP G
Sbjct: 746 GGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKAERMGFAELPVTG 792
>gi|281341190|gb|EFB16774.1| hypothetical protein PANDA_007702 [Ailuropoda melanoleuca]
Length = 718
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++ AA+
Sbjct: 70 KNALMQLNEIKPGLQYALLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLHAAE 126
Query: 235 VAYTALIE 242
A + ++
Sbjct: 127 KALRSFVQ 134
>gi|351701727|gb|EHB04646.1| Double-stranded RNA-binding protein Staufen-like protein 2
[Heterocephalus glaber]
Length = 511
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 104/256 (40%), Gaps = 40/256 (15%)
Query: 18 PRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPPP--- 73
P+Y + + G H F +S+ S+ S S S K++Q A A T P P
Sbjct: 24 PQYKLLNESGPAHSKMFSVQLSLGEQSWESEGS--SIKKAQQAVANKALTESTLPKPVQK 81
Query: 74 PPPPNVQCRYKSV-----LQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGH----- 123
PP NV S+ L A ++ + +Y + P +++A G
Sbjct: 82 PPKSNVNNNPGSITPTVELNGLAMKRG-EPAIYRPL--DPKPFPNYRANYNFRGMYNQRY 138
Query: 124 ------------TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYL 168
T + EFF K + A H AA AL +L + E +
Sbjct: 139 HCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSAQNGESGKEM 198
Query: 169 WDDGVFYKN---VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRT 224
DD K+ ++ E++L+ +PV +E IK G PHM +F++ V V GE G +
Sbjct: 199 DDDKDANKSEISLVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNS 256
Query: 225 KKKAEMKAAKVAYTAL 240
KK ++ +AA + L
Sbjct: 257 KKLSKKRAATIVLQEL 272
>gi|338210252|ref|YP_004654299.1| ribonuclease 3 [Runella slithyformis DSM 19594]
gi|336304065|gb|AEI47167.1| Ribonuclease 3 [Runella slithyformis DSM 19594]
Length = 248
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%)
Query: 168 LWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKK 227
L ++ +K+ L E + REG V + G+ H FIS V + GEVF +G +KKK
Sbjct: 173 LINNNANFKSRLIEWAQREGKEVRFMIVEEKGSRHFREFISQVILSGEVFAQGSGYSKKK 232
Query: 228 AEMKAAKVA 236
AE AA+ A
Sbjct: 233 AEQSAAEKA 241
>gi|17506341|ref|NP_491200.1| Protein D1037.1 [Caenorhabditis elegans]
gi|351060633|emb|CCD68348.1| Protein D1037.1 [Caenorhabditis elegans]
Length = 786
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 6 VQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAF 65
+ ELC ++RW+ P +S + GADH F ++ +N + + K KE + AA++A
Sbjct: 711 IMELCAKRRWNPPSFSCEESGADHLKMFVWTIVINDVEYRPMCGSKQKKEGKAVAAQVAL 770
>gi|332220545|ref|XP_003259416.1| PREDICTED: double-stranded RNA-specific adenosine deaminase isoform
3 [Nomascus leucogenys]
Length = 1234
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 99/283 (34%), Gaps = 69/283 (24%)
Query: 24 KDGADHDPRFKSSVSVNGLSF--------------------------------------- 44
+ G H+PRFK V +NG F
Sbjct: 579 QSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKAMTILLEEAKAKDSGKSEESS 638
Query: 45 HSSVSCKSSKESQNDAAKLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSI 104
H S +S K +++ + F S P ++C +K L N + L
Sbjct: 639 HYSTEKESEKTAESQIPTPSATSFFSGKSPVTTLLECMHK--LGNSCEFRLLS------- 689
Query: 105 REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVAL--------FSLACDDFQE 156
+EGPAH F+ V + TF S+ + K A+ AA+ A+ S+A D+
Sbjct: 690 KEGPAHEPKFQYCVAVGAQTFPSVSA-PSKKVAKQMAAEEAMKALHGEATNSMASDNQVR 748
Query: 157 AIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEV 216
I + YL + V L E + G + G PH P F+ +V G
Sbjct: 749 KI---GELVRYLNTNPV---GGLLEYARSHGFAAEFKLVDQSGPPHEPKFVYQAKVGGRW 802
Query: 217 FYGKAGRTKKKAEMKAAKVAYTALI------ERKLIFSLPFHG 253
F +KK+ + +AA A LI ER LP G
Sbjct: 803 FPAVCAHSKKQGKQEAADAALRVLIGENEKAERMGFTELPLTG 845
>gi|410908811|ref|XP_003967884.1| PREDICTED: double-stranded RNA-specific editase B2-like [Takifugu
rubripes]
Length = 726
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 169 WDDGVFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKK 227
W D KN L +L+ LR GL + + G H P F VEV+G F G G TKKK
Sbjct: 93 WSDSP--KNALVQLNELRPGLQYRMVS--QTGPVHAPIFSIAVEVNGLTFEG-TGPTKKK 147
Query: 228 AEMKAAKVAYTALIE 242
A+M+AA++A + I+
Sbjct: 148 AKMRAAELALKSFIQ 162
>gi|432110996|gb|ELK34468.1| Double-stranded RNA-specific editase B2 [Myotis davidii]
Length = 347
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 176 KNVLHEL-SLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
KN L +L LR GL Y + + G H P F VEV+G F G G TKKKA+M+AA
Sbjct: 90 KNALVQLHELRPGL---QYRMVSQTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAA 145
Query: 234 KVAYTALIE 242
++A + ++
Sbjct: 146 ELALRSFVQ 154
>gi|7798626|gb|AAF69767.1| double stranded RNA adenosine deaminase RED2 [Takifugu rubripes]
Length = 725
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 169 WDDGVFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKK 227
W D KN L +L+ LR GL + + G H P F VEV+G F G G TKKK
Sbjct: 96 WSDSP--KNALVQLNELRPGLQYRMVS--QTGPVHAPIFSIAVEVNGLTFEG-TGPTKKK 150
Query: 228 AEMKAAKVAYTALIE 242
A+M+AA++A + I+
Sbjct: 151 AKMRAAELALKSFIQ 165
>gi|262202009|ref|YP_003273217.1| ribonuclease III [Gordonia bronchialis DSM 43247]
gi|262085356|gb|ACY21324.1| ribonuclease III [Gordonia bronchialis DSM 43247]
Length = 262
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 39/79 (49%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L ELS +GL P Y+ G H F ++ V GE GRTKK+AE +
Sbjct: 164 GLDWKTSLQELSAEQGLGPPQYQISSTGPDHNKEFTAVAVVAGESLGNGVGRTKKEAEQQ 223
Query: 232 AAKVAYTALIERKLIFSLP 250
AA A+ L ER P
Sbjct: 224 AAARAWKTLTERATAVGSP 242
>gi|433446059|ref|ZP_20410190.1| ribonuclease III [Anoxybacillus flavithermus TNO-09.006]
gi|432000804|gb|ELK21696.1| ribonuclease III [Anoxybacillus flavithermus TNO-09.006]
Length = 231
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 148 SLACDDFQEAIFLYAHVSMY-LWDDGVF-----YKNVLHELSLREGLPVPLYETIKCGAP 201
+L D EA+ + +++ +G F YK+ L E R+G V Y+ ++ P
Sbjct: 126 ALYLDQGMEAVVQFLEKTIFPKIREGAFSHVMDYKSQLQEFVQRDGSGVLEYKILQERGP 185
Query: 202 -HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
H F+S V ++GE GR+KK+AE +AA++A L
Sbjct: 186 AHNKEFVSRVSLNGEELGVGVGRSKKEAEQRAAQMALAKL 225
>gi|403736854|ref|ZP_10949815.1| ribonuclease III [Austwickia chelonae NBRC 105200]
gi|403192949|dbj|GAB76585.1| ribonuclease III [Austwickia chelonae NBRC 105200]
Length = 267
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ VP Y+ + G H F + + EV G +KK+AE +
Sbjct: 170 GLDWKTSLQELAASGAYGVPEYKVSENGPDHEKVFTARAVIGEEVLGEGVGHSKKEAEQR 229
Query: 232 AAKVAYTALIERKLIFS 248
AA+VA+T L R + +
Sbjct: 230 AAEVAWTELDRRAQVAT 246
>gi|195108151|ref|XP_001998656.1| GI24090 [Drosophila mojavensis]
gi|193915250|gb|EDW14117.1| GI24090 [Drosophila mojavensis]
Length = 873
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 6 VQELCHQKRWSLPRYSTMKD--GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKL 63
+ EL + +W+ P+Y T+KD G H F SV +NG ++ + +C + KE++ +AAKL
Sbjct: 804 LNELTSKNKWTPPQY-TLKDDSGPSHSRMFLFSVEINGQTYTPAQACNNKKEAKLNAAKL 862
Query: 64 AFLHFTSPPP 73
PP
Sbjct: 863 CLRALGILPP 872
>gi|268560900|ref|XP_002646317.1| Hypothetical protein CBG12024 [Caenorhabditis briggsae]
Length = 762
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 6 VQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAF 65
V ELC ++RW+ P ++ + GADH F +V +N + + K KE + A ++A
Sbjct: 687 VMELCAKRRWNAPSFTCEESGADHSKMFIWTVVINNVQYRPMCGSKQKKEGKAVACQVAL 746
Query: 66 LHFTSPPPPP 75
P P
Sbjct: 747 QSLGVLPRDP 756
>gi|291414564|ref|XP_002723529.1| PREDICTED: RNA-specific adenosine deaminase B1 isoform 1
[Oryctolagus cuniculus]
Length = 701
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+ F G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQAFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|238019508|ref|ZP_04599934.1| hypothetical protein VEIDISOL_01377 [Veillonella dispar ATCC 17748]
gi|237864207|gb|EEP65497.1| hypothetical protein VEIDISOL_01377 [Veillonella dispar ATCC 17748]
Length = 245
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 153 DFQEAI-FLYAHVSMYL-----WDDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPT 205
D+Q A+ F+ H+ Y+ G YK +L E R+G +Y + + G H T
Sbjct: 148 DYQTAMNFVLKHLITYIKQALEGKRGKDYKTLLQEYVQRDGDKHTVYRLLSESGPDHAKT 207
Query: 206 FISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER 243
F +VE++G + +G++KK AE AA++ L+ +
Sbjct: 208 FHMVVEINGVTYEAGSGKSKKIAEQHAAQLTLEKLMAK 245
>gi|403234829|ref|ZP_10913415.1| ribonuclease III [Bacillus sp. 10403023]
Length = 243
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK+ L EL R+G+ + Y ++ P H F+S V ++GE G++KK+AE AA
Sbjct: 172 YKSQLQELVQRDGIGLIEYRVLQEKGPAHSREFVSRVSLNGEELGTGTGKSKKEAEQHAA 231
Query: 234 KVAYTAL 240
++A L
Sbjct: 232 EIALKNL 238
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
YKS LQ +R + Y ++E GPAH+ F +RV+++G + K+ K+AE A
Sbjct: 172 YKSQLQELVQRDGIGLIEYRVLQEKGPAHSREFVSRVSLNGEELGT-GTGKSKKEAEQHA 230
Query: 142 AKVALFSL 149
A++AL +L
Sbjct: 231 AEIALKNL 238
>gi|313679612|ref|YP_004057351.1| double-stranded RNA binding domain-containing protein
[Oceanithermus profundus DSM 14977]
gi|313152327|gb|ADR36178.1| double-stranded RNA binding domain protein [Oceanithermus profundus
DSM 14977]
Length = 165
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%)
Query: 176 KNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKV 235
K+ L+ + LP+P +ET G P FIS V ++GE+ GR+K++AE AA++
Sbjct: 5 KSALNAYCQSKNLPLPKFETRGTGTEDDPLFISDVSLNGELLATGQGRSKREAEKVAAEL 64
Query: 236 AYTAL 240
A L
Sbjct: 65 ALELL 69
Score = 41.2 bits (95), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 3 KTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAK 62
K+ + C K LP++ T G + DP F S VS+NG ++ +S +E++ AA+
Sbjct: 5 KSALNAYCQSKNLPLPKFETRGTGTEDDPLFISDVSLNG-ELLATGQGRSKREAEKVAAE 63
Query: 63 LAF 65
LA
Sbjct: 64 LAL 66
>gi|405980874|ref|ZP_11039203.1| ribonuclease III [Actinomyces neuii BVS029A5]
gi|404392893|gb|EJZ87950.1| ribonuclease III [Actinomyces neuii BVS029A5]
Length = 257
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ L P+YE+ G H F + VDG+V +KK A+ +
Sbjct: 159 GMDWKTTLQELAAALELSSPVYESTSTGPDHARVFTAQALVDGQVVASGTASSKKLAQHE 218
Query: 232 AAKVAYTALIER 243
AA+ A L +R
Sbjct: 219 AARAAVEELQKR 230
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 78 NVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQA 137
+ +K+ LQ A L SP+Y S GP HA F A+ +DG S + K A
Sbjct: 157 GIGMDWKTTLQELAAALELSSPVYESTSTGPDHARVFTAQALVDGQVVAS-GTASSKKLA 215
Query: 138 EHAAAKVALFSL 149
+H AA+ A+ L
Sbjct: 216 QHEAARAAVEEL 227
>gi|301058150|ref|ZP_07199202.1| ribonuclease III [delta proteobacterium NaphS2]
gi|300447782|gb|EFK11495.1| ribonuclease III [delta proteobacterium NaphS2]
Length = 236
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 2 YKTKVQELCHQKRWSLPRYS-TMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YK+ +QE Q LP+Y T + G HD F ++VNG+ + KS KE++ A
Sbjct: 167 YKSLLQEFTQQAFKCLPQYRLTEEKGPAHDKVFCIVLAVNGIVMAEGMG-KSKKEAEQHA 225
Query: 61 AKLAFLHFTS 70
AK AFL T
Sbjct: 226 AKEAFLRLTE 235
>gi|291414566|ref|XP_002723530.1| PREDICTED: RNA-specific adenosine deaminase B1 isoform 2
[Oryctolagus cuniculus]
Length = 715
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+ F G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQAFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|358410640|ref|XP_002702377.2| PREDICTED: double-stranded RNA-specific editase 1 [Bos taurus]
gi|359062794|ref|XP_002685172.2| PREDICTED: double-stranded RNA-specific editase 1 [Bos taurus]
Length = 701
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++ AA+
Sbjct: 80 KNALMQLNEIKPGLQYTLLS--QTGPVHAPLFLMSVEVNGQVFEG-SGPTKKKAKLHAAE 136
Query: 235 VAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
A + ++ GRS S + + +AD
Sbjct: 137 KALRSFVQFPNASEAHLAMGRSLSTNADFTSDQAD 171
>gi|440903429|gb|ELR54089.1| Double-stranded RNA-specific editase 1, partial [Bos grunniens
mutus]
Length = 745
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++ AA+
Sbjct: 125 KNALMQLNEIKPGLQYTLLS--QTGPVHAPLFLMSVEVNGQVFEG-SGPTKKKAKLHAAE 181
Query: 235 VAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
A + ++ GRS S + + +AD
Sbjct: 182 KALRSFVQFPNASEAHLAMGRSLSTNADFTSDQAD 216
>gi|395827514|ref|XP_003786946.1| PREDICTED: double-stranded RNA-specific editase B2 [Otolemur
garnettii]
Length = 1031
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 173 VFYKNVLHEL-SLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEM 230
V KN L +L L+ GL Y T+ + G H P F VEV+G F G G TKKKA+M
Sbjct: 420 VTPKNALVQLHELKPGL---QYRTVSQTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKM 475
Query: 231 KAAKVAYTALIE 242
+AA++A + ++
Sbjct: 476 RAAELALRSFVQ 487
>gi|319957798|ref|YP_004169061.1| RNAse iii [Nitratifractor salsuginis DSM 16511]
gi|319420202|gb|ADV47312.1| RNAse III [Nitratifractor salsuginis DSM 16511]
Length = 226
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK L EL+ P YE I P H F V++DGE GR+KK A+ KAA
Sbjct: 155 YKTALQELTQATHGVTPDYEMIGSSGPDHRKEFEVAVKLDGETIASAKGRSKKAAQQKAA 214
Query: 234 KVAYTAL 240
++A L
Sbjct: 215 EIALQKL 221
>gi|284992411|ref|YP_003410965.1| ribonuclease III [Geodermatophilus obscurus DSM 43160]
gi|284065656|gb|ADB76594.1| ribonuclease III [Geodermatophilus obscurus DSM 43160]
Length = 270
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 38/69 (55%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL R GL P Y G H TF + V + G V+ AGRTKK AE +
Sbjct: 184 GLDWKTSLQELGARLGLGAPTYVVEDTGPDHAKTFTAAVVLAGTVYGRGAGRTKKAAEQE 243
Query: 232 AAKVAYTAL 240
AA+ A+ AL
Sbjct: 244 AAEAAWHAL 252
>gi|212639596|ref|YP_002316116.1| ribonuclease III [Anoxybacillus flavithermus WK1]
gi|226735364|sp|B7GGE9.1|RNC_ANOFW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|212561076|gb|ACJ34131.1| DsRNA-specific ribonuclease [Anoxybacillus flavithermus WK1]
Length = 238
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK+ L E R+G V Y+ ++ P H F+S V ++GE GR+KK+AE +AA
Sbjct: 166 YKSQLQEFVQRDGSGVLEYKILQERGPAHNKEFVSRVSLNGEELGVGVGRSKKEAEQRAA 225
Query: 234 KVAYTAL 240
++A L
Sbjct: 226 QMALAKL 232
>gi|1657636|gb|AAB18134.1| RNA adenosine deaminase [Homo sapiens]
Length = 711
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLDEIKPGLQYMLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRYFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>gi|377573013|ref|ZP_09802089.1| ribonuclease III [Mobilicoccus pelagius NBRC 104925]
gi|377538287|dbj|GAB47254.1| ribonuclease III [Mobilicoccus pelagius NBRC 104925]
Length = 295
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ G +P Y + G H F + V E GR+KK+AE +
Sbjct: 172 GLDWKTSLQELAASGGHGMPEYRVTEEGPDHEKVFTAHAVVGDEDLGTGVGRSKKEAEQQ 231
Query: 232 AAKVAYTALIER 243
AA A+T L R
Sbjct: 232 AAHTAWTELTRR 243
>gi|296490897|tpg|DAA33010.1| TPA: adenosine deaminase, RNA-specific, B1 [Bos taurus]
Length = 748
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++ AA+
Sbjct: 80 KNALMQLNEIKPGLQYTLLS--QTGPVHAPLFLMSVEVNGQVFEG-SGPTKKKAKLHAAE 136
Query: 235 VAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
A + ++ GRS S + + +AD
Sbjct: 137 KALRSFVQFPNASEAHLAMGRSLSTNADFTSDQAD 171
>gi|85860141|ref|YP_462343.1| ribonuclease III [Syntrophus aciditrophicus SB]
gi|85723232|gb|ABC78175.1| ribonuclease III [Syntrophus aciditrophicus SB]
Length = 240
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKT +QEL + +PRY + + G DHD F+S +S+ G+ ++ KS KE++ A
Sbjct: 166 YKTTLQELSQNRFREIPRYRLIGEYGPDHDKLFESGLSIPGI-IETTGKGKSKKEAEQHA 224
Query: 61 AKLAF 65
A A
Sbjct: 225 AHKAL 229
>gi|335300848|ref|XP_003132836.2| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
editase 1-like [Sus scrofa]
Length = 650
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++ AA+
Sbjct: 83 KNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLHAAE 139
Query: 235 VAYTALIE 242
A + ++
Sbjct: 140 KALRSFVQ 147
>gi|15827877|ref|NP_302140.1| ribonuclease III [Mycobacterium leprae TN]
gi|221230354|ref|YP_002503770.1| ribonuclease III [Mycobacterium leprae Br4923]
gi|7531192|sp|O69469.1|RNC_MYCLE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|3150224|emb|CAA19196.1| ribonuclease III [Mycobacterium leprae]
gi|13093430|emb|CAC30612.1| RNAse III [Mycobacterium leprae]
gi|219933461|emb|CAR71754.1| RNAse III [Mycobacterium leprae Br4923]
Length = 238
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ G+ VP Y G H F ++V V + G +KK+AE K
Sbjct: 159 GLDWKTSLQELTAARGMGVPSYVVTSTGPDHDKEFTAVVVVMDTEYGSGIGHSKKEAEQK 218
Query: 232 AAKVAYTAL 240
AA A+ AL
Sbjct: 219 AASAAWKAL 227
>gi|344273169|ref|XP_003408396.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 1 [Loxodonta africana]
Length = 570
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 113/278 (40%), Gaps = 44/278 (15%)
Query: 6 VQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLA 64
V EL R P+Y + + G H F +S+ ++ S S S K++Q A A
Sbjct: 13 VNELARFNRVQ-PQYKLLNERGPAHSKMFSVQLSLGEQTWESEGS--SIKKAQQAVANKA 69
Query: 65 FLHFTSPPP---PPPPNVQCRYKSV-----LQNYARRKNLDSPLYSSIREGPAHACSFKA 116
T P P PP NV S+ L A ++ + +Y + P +++A
Sbjct: 70 LTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRG-EPAIYRPL--DPKPFPNYRA 126
Query: 117 RVTIDGH-----------------TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQE 156
G T + EFF K + A H AA AL +L + E
Sbjct: 127 NYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPE 186
Query: 157 AIFLYAHVSMYLWDDGVFYKN---VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEV 212
+ DD K+ ++ E++L+ +PV +E IK G PHM +F++ V V
Sbjct: 187 KSPQNGESGKEMDDDKDANKSEISLVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV 245
Query: 213 DGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLP 250
GE G +KK ++ +A A T L E K + LP
Sbjct: 246 -GEFSAEGEGNSKKLSKKRA---ATTVLQELKKLPPLP 279
>gi|15615052|ref|NP_243355.1| ribonuclease III [Bacillus halodurans C-125]
gi|20139354|sp|Q9KA05.1|RNC_BACHD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|10175109|dbj|BAB06208.1| ribonuclease III [Bacillus halodurans C-125]
Length = 263
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 148 SLACDDFQEAIFLYAHVSMY-LWDDGVF-----YKNVLHELSLREGLPVPLYETIKCGAP 201
+L D +A++L+ ++Y +G F +K+ L E R+ L YE ++ P
Sbjct: 158 ALYLDQGMDAVYLFLERTIYPKISEGAFSHMMDFKSQLQEFIQRDNLGHIHYEIVQERGP 217
Query: 202 -HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERK 244
H F+S V ++ E GR+KK+AE AA+ A L ++K
Sbjct: 218 AHNREFVSEVVLNNETLGVGTGRSKKEAEQHAAQQALITLSQKK 261
>gi|338720836|ref|XP_001489941.2| PREDICTED: double-stranded RNA-specific editase 1-like [Equus
caballus]
Length = 700
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++ AA+
Sbjct: 79 KNALMQLNEIKPGLQYMLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLHAAE 135
Query: 235 VAYTALIE 242
A + ++
Sbjct: 136 KALRSFVQ 143
>gi|145224771|ref|YP_001135449.1| ribonuclease III [Mycobacterium gilvum PYR-GCK]
gi|315445101|ref|YP_004077980.1| RNAse III [Mycobacterium gilvum Spyr1]
gi|145217257|gb|ABP46661.1| RNAse III [Mycobacterium gilvum PYR-GCK]
gi|315263404|gb|ADU00146.1| RNAse III [Mycobacterium gilvum Spyr1]
Length = 234
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K+ L EL+ L P Y G H F ++V + GRTKK+AE+K
Sbjct: 159 GLDWKSSLQELTASLALGAPSYHVTSTGPDHDKEFTAVVIIAEREHGTGVGRTKKEAELK 218
Query: 232 AAKVAYTAL 240
AA A+ AL
Sbjct: 219 AASAAWNAL 227
>gi|348525504|ref|XP_003450262.1| PREDICTED: double-stranded RNA-specific editase B2 [Oreochromis
niloticus]
Length = 728
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L+ LR GL + + G H P F VEV+G F G G TKKKA+M+AA+
Sbjct: 92 KNALVQLNELRPGLQYRMVS--QTGPVHAPVFSIAVEVNGLTFEG-TGPTKKKAKMRAAE 148
Query: 235 VAYTALIE 242
+A + I+
Sbjct: 149 LALKSFIQ 156
>gi|269794452|ref|YP_003313907.1| RNAse III [Sanguibacter keddieii DSM 10542]
gi|269096637|gb|ACZ21073.1| RNAse III [Sanguibacter keddieii DSM 10542]
Length = 234
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+ LQ A +N+ +P Y+S EGP HA F A V IDG + + K AE AA
Sbjct: 166 WKTSLQEAAAERNVGAPEYTSEGEGPDHARIFTAHVIIDGEILGTGQGTAK-KHAEQIAA 224
Query: 143 KVALFSL 149
+ A +L
Sbjct: 225 EQAYVAL 231
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L E + + P Y + G H F + V +DGE+ G KK AE
Sbjct: 163 GLDWKTSLQEAAAERNVGAPEYTSEGEGPDHARIFTAHVIIDGEILGTGQGTAKKHAEQI 222
Query: 232 AAKVAYTALIER 243
AA+ AY AL R
Sbjct: 223 AAEQAYVALTGR 234
>gi|303231076|ref|ZP_07317816.1| ribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|401679475|ref|ZP_10811402.1| ribonuclease III [Veillonella sp. ACP1]
gi|302514207|gb|EFL56209.1| ribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|400219409|gb|EJO50277.1| ribonuclease III [Veillonella sp. ACP1]
Length = 247
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
YK++LQ + +R +YS I E GP HA +F V+IDG T+E+ K+ K AE A
Sbjct: 177 YKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEVSIDGITYEA-GTGKSKKIAEQHA 235
Query: 142 AKVALFSL 149
A++ L L
Sbjct: 236 AQLTLERL 243
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEM 230
G YK +L E R+G +Y I + G H TF+ V +DG + G++KK AE
Sbjct: 174 GKDYKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEVSIDGITYEAGTGKSKKIAEQ 233
Query: 231 KAAKVAYTALI 241
AA++ L+
Sbjct: 234 HAAQLTLERLM 244
>gi|317419725|emb|CBN81761.1| Double-stranded RNA-specific editase B2 [Dicentrarchus labrax]
Length = 726
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L+ LR GL + + G H P F VEV+G F G G TKKKA+M+AA+
Sbjct: 98 KNALVQLNELRPGLQYRMVS--QTGPVHAPVFSIAVEVNGLTFEG-TGPTKKKAKMRAAE 154
Query: 235 VAYTALIE 242
+A + I+
Sbjct: 155 LALKSFIQ 162
>gi|16803845|ref|NP_465330.1| ribonuclease III [Listeria monocytogenes EGD-e]
gi|386050782|ref|YP_005968773.1| ribonuclease III [Listeria monocytogenes FSL R2-561]
gi|404284301|ref|YP_006685198.1| ribonuclease III [Listeria monocytogenes SLCC2372]
gi|405758856|ref|YP_006688132.1| ribonuclease III [Listeria monocytogenes SLCC2479]
gi|22654060|sp|Q8Y691.1|RNC_LISMO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|16411259|emb|CAC99883.1| rncS [Listeria monocytogenes EGD-e]
gi|346424628|gb|AEO26153.1| ribonuclease III [Listeria monocytogenes FSL R2-561]
gi|404233803|emb|CBY55206.1| ribonuclease III [Listeria monocytogenes SLCC2372]
gi|404236738|emb|CBY58140.1| ribonuclease III [Listeria monocytogenes SLCC2479]
Length = 229
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 173 VFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V YK L E+ R+ + Y+ + + G H F + V V+G+V +GRTKK+AE
Sbjct: 158 VDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQS 217
Query: 232 AAKVAYTALIER 243
AA+ A LI R
Sbjct: 218 AAQFAINKLIHR 229
>gi|419585204|ref|ZP_14121265.1| ribonuclease III [Campylobacter coli 202/04]
gi|380562621|gb|EIA85477.1| ribonuclease III [Campylobacter coli 202/04]
Length = 224
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKTK+QE+ K P+Y T++ G DH +F+ ++ +NG +++ S KE+Q A
Sbjct: 155 YKTKLQEITQAKLGQTPQYETVRAFGPDHLKQFEIALFLNGQELARAIAG-SKKEAQQMA 213
Query: 61 AKL 63
AK+
Sbjct: 214 AKI 216
>gi|349686514|ref|ZP_08897656.1| ribonuclease III [Gluconacetobacter oboediens 174Bp2]
Length = 256
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 57/151 (37%), Gaps = 31/151 (20%)
Query: 107 GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA-AKVALFSLACDDFQEAIFLYAHVS 165
GP HA T+ ++ L AEH A A V + D EAI +
Sbjct: 91 GPRHAHLVSR--TVLAQVAHAMGLQSALDVAEHEARAGVRQMANVLADAVEAIL----GA 144
Query: 166 MYL--------------WDDGVFY--------KNVLHELSLREGLPVPLYETIKCGAP-H 202
MYL W+D + K L E L GLP+P Y + P H
Sbjct: 145 MYLDGGLAPARAFVRRMWNDSIVAQARPPKDPKTALQEWVLGRGLPLPQYRVVSSDGPSH 204
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
P F+ V+ G G AG +K+ AE AA
Sbjct: 205 APRFVIAVDAQGRTGQGIAG-SKRAAESDAA 234
>gi|145593838|ref|YP_001158135.1| ribonuclease III [Salinispora tropica CNB-440]
gi|145303175|gb|ABP53757.1| RNAse III [Salinispora tropica CNB-440]
Length = 252
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
+K L EL+ +GL VP Y G H+ TF + V V G + G GR+KK+AE +AA+
Sbjct: 168 WKTSLQELTAAQGLGVPEYRIEGTGPDHLKTFTAWVVVAGRRYGGAEGRSKKEAEQRAAE 227
Query: 235 VAYTALIER 243
A+ L E+
Sbjct: 228 AAWRTLTEQ 236
>gi|426219531|ref|XP_004003975.1| PREDICTED: double-stranded RNA-specific editase 1 [Ovis aries]
Length = 1316
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++ AA+
Sbjct: 689 KNALMQLNEIKPGLQYTLLS--QTGPVHAPLFLMSVEVNGQVFEG-SGPTKKKAKLHAAE 745
Query: 235 VAYTALIE 242
A + ++
Sbjct: 746 KALRSFVQ 753
>gi|432927309|ref|XP_004080962.1| PREDICTED: double-stranded RNA-specific editase B2-like [Oryzias
latipes]
Length = 731
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L+ LR GL + + G H P F VEV+G F G G TKKKA+M+AA+
Sbjct: 98 KNALVQLNELRPGLQYRMVS--QTGPVHAPVFSIAVEVNGLTFEG-TGPTKKKAKMRAAE 154
Query: 235 VAYTALIE 242
+A + I+
Sbjct: 155 LALKSFIQ 162
>gi|283781424|ref|YP_003372179.1| ribonuclease III [Pirellula staleyi DSM 6068]
gi|283439877|gb|ADB18319.1| ribonuclease III [Pirellula staleyi DSM 6068]
Length = 273
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
YKS+LQ +A+R+ ++P Y + E GP H+ FK ++ G +++ + +N K+AE A
Sbjct: 197 YKSLLQQFAQRECGNTPTYHLLDEKGPDHSKCFKISASVGGKKYQA-AWGRNKKEAEQRA 255
Query: 142 AKVAL 146
A AL
Sbjct: 256 ANNAL 260
>gi|72009988|ref|XP_781832.1| PREDICTED: double-stranded RNA-specific editase 1-like
[Strongylocentrotus purpuratus]
Length = 696
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 31/140 (22%)
Query: 176 KNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L + L E P +++T + G H PTF+ VEV+ ++F G GR+KK A M AA+
Sbjct: 84 KNAL--MQLNEIKPGLVFKTQSQTGPVHAPTFVVSVEVNDQLFEG-TGRSKKTARMHAAE 140
Query: 235 VAYTALIE-----------RKLIFSLPF-------HGG---------RSCSIGSITHTVK 267
+A + I+ + F+ F HGG R + S+ V
Sbjct: 141 LALKSFIQFPNASDAYQALGRFQFNADFTSDQPEVHGGFNPFDADQERPVTPPSMMKVVL 200
Query: 268 ADGVPNSTLSSDLDVTLDPN 287
AD NS ++ V +PN
Sbjct: 201 ADKTQNSPDVMNMKVDQEPN 220
>gi|429759937|ref|ZP_19292431.1| ribonuclease III [Veillonella atypica KON]
gi|429178809|gb|EKY20075.1| ribonuclease III [Veillonella atypica KON]
Length = 247
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
YK++LQ + +R +YS I E GP HA +F V+IDG T+E+ K+ K AE A
Sbjct: 177 YKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEVSIDGITYEA-GTGKSKKIAEQHA 235
Query: 142 AKVAL 146
A++ L
Sbjct: 236 AQLTL 240
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEM 230
G YK +L E R+G +Y I + G H TF+ V +DG + G++KK AE
Sbjct: 174 GKDYKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEVSIDGITYEAGTGKSKKIAEQ 233
Query: 231 KAAKVAYTALI 241
AA++ L+
Sbjct: 234 HAAQLTLERLM 244
>gi|348588697|ref|XP_003480101.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
2-like isoform 1 [Cavia porcellus]
Length = 570
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 109/266 (40%), Gaps = 43/266 (16%)
Query: 18 PRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPPP--- 73
P+Y + + G H F +S+ ++ S S S K++Q A A T P P
Sbjct: 24 PQYKLLNESGPAHSKMFSVQLSLGEQTWESEGS--SIKKAQQAVANKALTESTLPKPVQK 81
Query: 74 PPPPNVQCRYKSV-----LQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGH----- 123
PP NV S+ L A ++ + +Y + P +++A G
Sbjct: 82 PPKSNVNNNPGSITPTVELNGLAMKRG-EPAIYRPL--DPKPFPNYRANYNFRGMYNQRY 138
Query: 124 ------------TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYL 168
T + EFF K + A H AA AL +L + E +
Sbjct: 139 HCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSAQNGESGKEM 198
Query: 169 WDDGVFYKN---VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRT 224
DD K+ ++ E++L+ +PV +E IK G PHM +F++ V V GE G +
Sbjct: 199 DDDKDANKSEISLVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNS 256
Query: 225 KKKAEMKAAKVAYTALIERKLIFSLP 250
KK ++ +A A T L E K + LP
Sbjct: 257 KKLSKKRA---ATTVLQELKKLPPLP 279
>gi|303229664|ref|ZP_07316452.1| ribonuclease III [Veillonella atypica ACS-134-V-Col7a]
gi|302515789|gb|EFL57743.1| ribonuclease III [Veillonella atypica ACS-134-V-Col7a]
Length = 247
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
YK++LQ + +R +YS I E GP HA +F V+IDG T+E+ K+ K AE A
Sbjct: 177 YKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEVSIDGITYEA-GTGKSKKIAEQHA 235
Query: 142 AKVAL 146
A++ L
Sbjct: 236 AQLTL 240
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEM 230
G YK +L E R+G +Y I + G H TF+ V +DG + G++KK AE
Sbjct: 174 GKDYKTLLQEFVQRDGDKHIVYSLISESGPDHAKTFMMEVSIDGITYEAGTGKSKKIAEQ 233
Query: 231 KAAKVAYTALI 241
AA++ L+
Sbjct: 234 HAAQLTLERLM 244
>gi|164508744|emb|CAM07147.1| double stranded RNA activated protein kinase 1 [Tetraodon
nigroviridis]
Length = 667
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
Y ++L+E + +EG + YE + C P H TF + ++ F G+ KK A+ KAA
Sbjct: 4 YISLLNEQAQKEGWSL-RYEDVGCDGPDHFRTFKIVTIINDRAFPEGVGKNKKDAKQKAA 62
Query: 234 KVAYTALIERK 244
+ A+TAL++++
Sbjct: 63 ENAWTALMQQQ 73
>gi|296226702|ref|XP_002759044.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 1 [Callithrix jacchus]
Length = 570
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 113/278 (40%), Gaps = 44/278 (15%)
Query: 6 VQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLA 64
V EL R P+Y + + G H F +S+ ++ S S S K++Q A A
Sbjct: 13 VNELARFNRVQ-PQYKLLNERGPAHSKMFSVQLSLGEQTWESEGS--SIKKAQQAVANKA 69
Query: 65 FLHFTSPPP---PPPPNVQCRYKSV-----LQNYARRKNLDSPLYSSIREGPAHACSFKA 116
T P P PP NV S+ L A ++ + +Y + P +++A
Sbjct: 70 LTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRG-EPAIYRPL--DPKPFPNYRA 126
Query: 117 RVTIDGH-----------------TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQE 156
G T + EFF K + A H AA AL +L + E
Sbjct: 127 NYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPE 186
Query: 157 AIFLYAHVSMYLWDDGVFYKN---VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEV 212
+ DD K+ ++ E++L+ +PV +E IK G PHM +F++ V V
Sbjct: 187 KSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVS-FEVIKESGPPHMKSFVTRVSV 245
Query: 213 DGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLP 250
GE G +KK ++ +A A T L E K + LP
Sbjct: 246 -GEFSAEGEGNSKKLSKKRA---ATTVLQELKKLPPLP 279
>gi|395855269|ref|XP_003800089.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
[Otolemur garnettii]
Length = 428
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 10 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSHQNGESGKEMDDDKDANKSEIS 69
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 70 LVFEIALKRNMPVS-FEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 124
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 125 TTVLQELKKLPPLP 138
>gi|403304162|ref|XP_003942678.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 2 [Saimiri boliviensis boliviensis]
Length = 570
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 113/278 (40%), Gaps = 44/278 (15%)
Query: 6 VQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLA 64
V EL R P+Y + + G H F +S+ ++ S S S K++Q A A
Sbjct: 13 VNELARFNRVQ-PQYKLLNERGPAHSKMFSVQLSLGEQTWESEGS--SIKKAQQAVANKA 69
Query: 65 FLHFTSPPP---PPPPNVQCRYKSV-----LQNYARRKNLDSPLYSSIREGPAHACSFKA 116
T P P PP NV S+ L A ++ + +Y + P +++A
Sbjct: 70 LTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRG-EPAIYRPL--DPKPFPNYRA 126
Query: 117 RVTIDGH-----------------TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQE 156
G T + EFF K + A H AA AL +L + E
Sbjct: 127 NYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPE 186
Query: 157 AIFLYAHVSMYLWDDGVFYKN---VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEV 212
+ DD K+ ++ E++L+ +PV +E IK G PHM +F++ V V
Sbjct: 187 KSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV 245
Query: 213 DGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLP 250
GE G +KK ++ +A A T L E K + LP
Sbjct: 246 -GEFSAEGEGNSKKLSKKRA---ATTVLQELKKLPPLP 279
>gi|431891847|gb|ELK02381.1| Double-stranded RNA-binding protein Staufen like protein 2
[Pteropus alecto]
Length = 510
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 111/273 (40%), Gaps = 43/273 (15%)
Query: 6 VQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLA 64
V EL R P+Y +K+ G H F +S+ ++ + S S K++Q A A
Sbjct: 13 VNELARFSRVQ-PQYKLLKERGPAHSKMFSVQLSLGEQTWEAEGS--SIKKAQQAVASKA 69
Query: 65 FLHFTSPPP---PPPPNVQCRYKSV-----LQNYARRKNLDSPLYSSIREGPAHACSFKA 116
T P P PP NV S+ L A ++ + +Y + P S++A
Sbjct: 70 LTESTLPRPVQKPPKSNVNNNPGSITPTVELNGLAMKRG-EPAIYRPL--DPKPFPSYRA 126
Query: 117 RVTIDGH-----------------TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQE 156
G T + EFF K + A H AA AL +L + E
Sbjct: 127 NYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPLPE 186
Query: 157 AIFLYAHVSMYLWDDGVFYKN---VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEV 212
+ DD K+ ++ E++L+ +PV +E IK G PHM +F++ V V
Sbjct: 187 KSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV 245
Query: 213 DGEVFYGKAGRTKKKAEMKAAKVAYTALIERKL 245
GE G +KK ++ +AA L RKL
Sbjct: 246 -GEFSAEGEGNSKKLSKKRAATTVLQEL--RKL 275
>gi|205355648|ref|ZP_03222418.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8421]
gi|205346425|gb|EDZ33058.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8421]
Length = 225
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKTK+QE+ K P+Y T++ G DH +F+ ++ ++G +++ S KE+Q A
Sbjct: 156 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAG-SKKEAQQMA 214
Query: 61 AKLAF 65
AK+A
Sbjct: 215 AKIAL 219
>gi|424846628|ref|ZP_18271222.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NW]
gi|356485926|gb|EHI15913.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NW]
Length = 224
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKTK+QE+ K P+Y T++ G DH +F+ ++ +NG +++ S KE+Q A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLNGKELARAIAG-SKKEAQQMA 213
Query: 61 AKLAF 65
AK+
Sbjct: 214 AKITL 218
>gi|291238580|ref|XP_002739212.1| PREDICTED: Probable RISC-loading complex subunit
BRAFLDRAFT_242885-like [Saccoglossus kowalevskii]
Length = 315
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 70/162 (43%), Gaps = 19/162 (11%)
Query: 85 SVLQNYARRKNLDSPLYSSIR-EGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAK 143
S+LQ +++L +P+Y I EG AH F RVT+ HT K KQA+H AA+
Sbjct: 13 SILQELCTKRSL-TPIYDLIACEGAAHQPKFVYRVTVGEHTANGDGTSK--KQAKHNAAE 69
Query: 144 VALF---------SLACDDFQEAIFLYAHVSMYLWDDGVFYKNV--LHELSLREGLPVPL 192
L S D S+Y +DG+ V L EL + P
Sbjct: 70 NVLEQFNVSVPKPSTPSQDASNGSTEADGNSVY--NDGIPGNPVGQLQELVVARHWRRPD 127
Query: 193 YETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
Y I +CG PH FI V GK GR+KK A+ AA
Sbjct: 128 YIQISECGPPHSREFIIACRVHSFQEQGK-GRSKKIAKRAAA 168
>gi|219968357|emb|CAO98758.1| double-stranded RNA activated protein kinase 1 [Tetraodon
nigroviridis]
Length = 667
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
Y ++L+E + +EG + YE + C P H TF + ++ F G+ KK A+ KAA
Sbjct: 4 YISLLNEQAQKEGWSL-RYEDVGCDGPDHFRTFKIVTIINDRAFPEGVGKNKKDAKQKAA 62
Query: 234 KVAYTALIERK 244
+ A+TAL++++
Sbjct: 63 ENAWTALMQQQ 73
>gi|16307507|gb|AAH10300.1| Stau2 protein, partial [Mus musculus]
Length = 533
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 114 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEIS 173
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 174 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 228
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 229 TTVLQELKKLPPLP 242
>gi|148925776|ref|ZP_01809464.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8486]
gi|145845786|gb|EDK22877.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8486]
Length = 229
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKTK+QE+ K P+Y T++ G DH +F+ ++ ++G +++ S KE+Q A
Sbjct: 160 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAG-SKKEAQQMA 218
Query: 61 AKLAF 65
AK+A
Sbjct: 219 AKIAL 223
>gi|449276158|gb|EMC84820.1| Double-stranded RNA-specific editase B2, partial [Columba livia]
Length = 682
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 74/179 (41%), Gaps = 31/179 (17%)
Query: 176 KNVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L L+ GL + + G H P F VEV+G F G G TKKKA+M+AA+
Sbjct: 64 KNALVQLHELKPGLQYKMVS--QTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAAE 120
Query: 235 VAYTALIERKLIFSLPFHGGRSCSIGSITHTVKADGVPNSTLSSDLDVTLDPNFIQKSMS 294
+A + ++ F G +C S T P++ +P+ + S
Sbjct: 121 LALKSFVQFPNACQAHFAMG-NCINPSTDFTSDQADFPDTLFKE-----FEPSTHNEDFS 174
Query: 295 VSSPV---------------------LEHGEDGKDSMAAKRATVTSSYLLCNRVRVYTR 332
V +PV + HG+ K MA+K + + +L N +R R
Sbjct: 175 VYNPVNNELLSTAYRHGRLLCHTLDLMGHGKQNKHKMASKAESEKNPVVLLNELRSGLR 233
>gi|365157110|ref|ZP_09353391.1| ribonuclease 3 [Bacillus smithii 7_3_47FAA]
gi|363625844|gb|EHL76855.1| ribonuclease 3 [Bacillus smithii 7_3_47FAA]
Length = 243
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 170 DDGVF-----YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGR 223
D G F +K L E+ R+G + Y ++ P H F+S V ++G+V GR
Sbjct: 162 DAGAFSHVMDFKTQLQEMVQRDGNGILTYRILQEKGPAHHREFVSEVALNGQVLGVGTGR 221
Query: 224 TKKKAEMKAAKVAYTAL 240
+KK+AE +AA+ A + L
Sbjct: 222 SKKEAEQRAAEQALSKL 238
>gi|419760458|ref|ZP_14286737.1| ribonuclease III [Thermosipho africanus H17ap60334]
gi|407514561|gb|EKF49376.1| ribonuclease III [Thermosipho africanus H17ap60334]
Length = 230
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 163 HVSMYLWDDGVF-YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKA 221
++ ++L +F YK L E++ +P+YET+ FI+ + +DG+++
Sbjct: 149 YIEIFLSGKRIFDYKTKLQEITQDRFKQLPVYETV----SQKNKFITTLYIDGKIYSKAE 204
Query: 222 GRTKKKAEMKAAKVAYTALIERKL 245
G +KK++E AAK+AY L E +
Sbjct: 205 GFSKKESEKLAAKIAYEKLKEEEF 228
>gi|315638039|ref|ZP_07893224.1| ribonuclease III [Campylobacter upsaliensis JV21]
gi|315481887|gb|EFU72506.1| ribonuclease III [Campylobacter upsaliensis JV21]
Length = 224
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKTK+QE+ K P Y T++ G DH F+ ++++ G +++ S KE+Q A
Sbjct: 155 YKTKLQEITQAKMGLTPEYETLRAFGPDHQKSFEIALNLEGKEMARAIAS-SKKEAQQMA 213
Query: 61 AKL 63
AKL
Sbjct: 214 AKL 216
>gi|315122353|ref|YP_004062842.1| ribonuclease III [Candidatus Liberibacter solanacearum CLso-ZC1]
gi|313495755|gb|ADR52354.1| ribonuclease III [Candidatus Liberibacter solanacearum CLso-ZC1]
Length = 232
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 3 KTKVQELCHQKRWSLPRYSTM-KDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
KT++QE H K P Y M + G DHDPRF V V GL + C Q AA
Sbjct: 163 KTELQEWAHAKFRVTPTYKIMLRSGPDHDPRFTVMVDVLGLYSGKGIDCSKRSAEQMAAA 222
Query: 62 KL 63
++
Sbjct: 223 EI 224
>gi|301777794|ref|XP_002924315.1| PREDICTED: double-stranded RNA-specific editase B2-like [Ailuropoda
melanoleuca]
Length = 1006
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 173 VFYKNVLHEL-SLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEM 230
V KN L +L LR GL Y + + G H P F VEV+G F G G TKKKA+M
Sbjct: 424 VTPKNALVQLHDLRPGL---QYRMVSQTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKM 479
Query: 231 KAAKVAYTALIE 242
+AA++A + ++
Sbjct: 480 RAAELALRSFVQ 491
>gi|73919460|sp|Q68SB1.1|STAU2_RAT RecName: Full=Double-stranded RNA-binding protein Staufen homolog
2; Short=r-staufen protein
gi|47679385|gb|AAT36673.1| staufen2 spliceform LL [Rattus norvegicus]
Length = 571
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 151 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEIS 210
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 211 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 265
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 266 TTVLQELKKLPPLP 279
>gi|86149260|ref|ZP_01067491.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CF93-6]
gi|88596211|ref|ZP_01099448.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 84-25]
gi|218563224|ref|YP_002345004.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC 11168 =
ATCC 700819]
gi|317511632|ref|ZP_07968930.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 305]
gi|384448848|ref|YP_005656899.1| ribonuclease III [Campylobacter jejuni subsp. jejuni IA3902]
gi|403056346|ref|YP_006633751.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC
11168-BN148]
gi|407942970|ref|YP_006858617.1| ribonuclease III [Campylobacter jejuni subsp. jejuni PT14]
gi|415731373|ref|ZP_11473447.1| ribonuclease III [Campylobacter jejuni subsp. jejuni DFVF1099]
gi|419620986|ref|ZP_14154381.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 51494]
gi|419623819|ref|ZP_14156940.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23218]
gi|419625061|ref|ZP_14158085.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23223]
gi|419628386|ref|ZP_14161245.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23263]
gi|419629909|ref|ZP_14162621.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 60004]
gi|419630965|ref|ZP_14163565.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23264]
gi|419633703|ref|ZP_14166131.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23269]
gi|419635954|ref|ZP_14168241.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 55037]
gi|419637815|ref|ZP_14169964.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9879]
gi|419639421|ref|ZP_14171450.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 86605]
gi|419645376|ref|ZP_14176925.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9081]
gi|419647079|ref|ZP_14178522.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 53161]
gi|419649109|ref|ZP_14180411.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9217]
gi|419650140|ref|ZP_14181366.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-1025]
gi|419651560|ref|ZP_14182656.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-894]
gi|419656399|ref|ZP_14187201.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-988]
gi|419658399|ref|ZP_14189029.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-1]
gi|419661780|ref|ZP_14192099.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-831]
gi|419663951|ref|ZP_14194134.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-4]
gi|419671772|ref|ZP_14201414.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-14]
gi|419673128|ref|ZP_14202607.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 51037]
gi|419675820|ref|ZP_14205079.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 110-21]
gi|419677786|ref|ZP_14206919.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 87330]
gi|419679551|ref|ZP_14208544.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 87459]
gi|419681434|ref|ZP_14210268.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 140-16]
gi|419684794|ref|ZP_14213374.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1577]
gi|419687924|ref|ZP_14216256.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1854]
gi|419690916|ref|ZP_14219105.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1893]
gi|419696155|ref|ZP_14224025.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23210]
gi|424849058|ref|ZP_18273527.1| ribonuclease III [Campylobacter jejuni subsp. jejuni D2600]
gi|22654076|sp|Q9PM40.1|RNC_CAMJE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|85840042|gb|EAQ57300.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CF93-6]
gi|88191052|gb|EAQ95024.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 84-25]
gi|112360931|emb|CAL35732.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC 11168 =
ATCC 700819]
gi|284926829|gb|ADC29181.1| ribonuclease III [Campylobacter jejuni subsp. jejuni IA3902]
gi|315927617|gb|EFV06948.1| ribonuclease III [Campylobacter jejuni subsp. jejuni DFVF1099]
gi|315928870|gb|EFV08132.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 305]
gi|356487695|gb|EHI17637.1| ribonuclease III [Campylobacter jejuni subsp. jejuni D2600]
gi|380597882|gb|EIB18338.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 51494]
gi|380599969|gb|EIB20317.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23218]
gi|380604482|gb|EIB24496.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23263]
gi|380605405|gb|EIB25378.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23223]
gi|380606913|gb|EIB26800.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 60004]
gi|380611214|gb|EIB30771.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 55037]
gi|380611347|gb|EIB30900.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23269]
gi|380611932|gb|EIB31472.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23264]
gi|380614766|gb|EIB34092.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9879]
gi|380616423|gb|EIB35627.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 86605]
gi|380620465|gb|EIB39355.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9081]
gi|380621996|gb|EIB40766.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 53161]
gi|380625526|gb|EIB44108.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9217]
gi|380628846|gb|EIB47133.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-1025]
gi|380631159|gb|EIB49369.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-894]
gi|380633483|gb|EIB51436.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-1]
gi|380635405|gb|EIB53222.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-988]
gi|380639431|gb|EIB56924.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-831]
gi|380641974|gb|EIB59278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-4]
gi|380648961|gb|EIB65749.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-14]
gi|380651181|gb|EIB67749.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 110-21]
gi|380653448|gb|EIB69868.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 87330]
gi|380654393|gb|EIB70755.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 51037]
gi|380657044|gb|EIB73153.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 87459]
gi|380658109|gb|EIB74142.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 140-16]
gi|380666172|gb|EIB81720.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1577]
gi|380666470|gb|EIB82007.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1854]
gi|380668031|gb|EIB83415.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1893]
gi|380675351|gb|EIB90258.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23210]
gi|401781998|emb|CCK67709.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC
11168-BN148]
gi|407906808|gb|AFU43637.1| ribonuclease III [Campylobacter jejuni subsp. jejuni PT14]
Length = 224
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKTK+QE+ K P+Y T++ G DH +F+ ++ ++G +++ S KE+Q A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAG-SKKEAQQMA 213
Query: 61 AKLAF 65
AK+A
Sbjct: 214 AKIAL 218
>gi|47679381|gb|AAT36671.1| staufen2 spliceform SL [Rattus norvegicus]
gi|52001195|gb|AAU21478.1| double-stranded RNA binding protein staufen 2 59 kDa isoform
[Rattus norvegicus]
Length = 539
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 119 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEIS 178
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 179 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 233
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 234 TTVLQELKKLPPLP 247
>gi|345793477|ref|XP_544281.3| PREDICTED: double-stranded RNA-specific editase B2 [Canis lupus
familiaris]
Length = 922
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 173 VFYKNVLHEL-SLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEM 230
V KN L +L LR GL Y + + G H P F VEV+G F G G TKKKA+M
Sbjct: 171 VAPKNALVQLHDLRPGL---QYRMVSQTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKM 226
Query: 231 KAAKVAYTALIE 242
+AA++A + ++
Sbjct: 227 RAAELALRSFVQ 238
>gi|237785779|ref|YP_002906484.1| ribonuclease III [Corynebacterium kroppenstedtii DSM 44385]
gi|237758691|gb|ACR17941.1| ribonuclease III [Corynebacterium kroppenstedtii DSM 44385]
Length = 246
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 33/66 (50%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
+K L E GL P Y T G H P F S V + G+V+ G TKK+AE AA+
Sbjct: 181 WKTELLEKIAGRGLGEPEYNTTISGPAHDPHFTSTVSLQGKVWGHGEGHTKKEAEHHAAR 240
Query: 235 VAYTAL 240
A AL
Sbjct: 241 EANDAL 246
>gi|121613213|ref|YP_001001278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176]
gi|121504230|gb|EAQ72743.2| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176]
Length = 225
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKTK+QE+ K P+Y T++ G DH +F+ ++ ++G +++ S KE+Q A
Sbjct: 156 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAG-SKKEAQQMA 214
Query: 61 AKLAF 65
AK+A
Sbjct: 215 AKIAL 219
>gi|427789545|gb|JAA60224.1| Putative trna-dihydrouridine synthase [Rhipicephalus pulchellus]
Length = 451
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 84 KSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAK 143
K+VL N+ RR N P Y + + SF++ V +D + S KN K AE +AA
Sbjct: 372 KTVLINWTRRNNYPHPFYKT----ESMEKSFRSVVLVDRKKYSSTYLEKNKKYAEQSAAL 427
Query: 144 VALFSLACDD 153
VAL++L D
Sbjct: 428 VALYALGLID 437
>gi|419659778|ref|ZP_14190291.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-979]
gi|419667284|ref|ZP_14197262.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-10]
gi|380638585|gb|EIB56135.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-979]
gi|380646268|gb|EIB63243.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-10]
Length = 224
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKTK+QE+ K P+Y T++ G DH +F+ ++ ++G +++ S KE+Q A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAG-SKKEAQQMA 213
Query: 61 AKLAF 65
AK+A
Sbjct: 214 AKIAL 218
>gi|55741782|ref|NP_001007150.1| double-stranded RNA-binding protein Staufen homolog 2 isoform LL
(A) [Rattus norvegicus]
gi|19526444|gb|AAL89718.1|AF483620_1 RNA-binding protein staufen splice form A [Rattus norvegicus]
Length = 571
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 151 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEIS 210
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 211 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 265
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 266 TTVLQELKKLPPLP 279
>gi|429730866|ref|ZP_19265512.1| ribonuclease III [Corynebacterium durum F0235]
gi|429147304|gb|EKX90334.1| ribonuclease III [Corynebacterium durum F0235]
Length = 255
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEV-DGEVFYGKAGRTKKKAEMKAA 233
+K L L LP P YET G H F ++ V + E+ GK G +KK+AE +AA
Sbjct: 180 WKTALQNLVSERRLPQPEYETSSVGPDHDLVFTAIARVGEAELGTGK-GPSKKQAEQQAA 238
Query: 234 KVAYTALIERKLIFSLP 250
+VA+ AL R + ++P
Sbjct: 239 RVAFHAL--RDNVTTMP 253
>gi|227821403|ref|YP_002825373.1| ribonuclease III [Sinorhizobium fredii NGR234]
gi|259491961|sp|C3M8S4.1|RNC_RHISN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|227340402|gb|ACP24620.1| ribonuclease III [Sinorhizobium fredii NGR234]
Length = 239
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 3 KTKVQELCHQKRWSLPRYSTM-KDGADHDPRFKSSVSVNGLS 43
KT++QE H K + PRY T + G DHDPRF +V V+G++
Sbjct: 164 KTELQEWAHAKFGAAPRYRTDDRSGPDHDPRFTVTVEVDGIA 205
>gi|172040468|ref|YP_001800182.1| ribonuclease III [Corynebacterium urealyticum DSM 7109]
gi|171851772|emb|CAQ04748.1| ribonuclease III [Corynebacterium urealyticum DSM 7109]
Length = 245
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
+K + E LP+P YE G H F + +++DG+ GRTKK+AE +AA+
Sbjct: 176 WKTTVQERLREHDLPMPEYEVTSSGPEHDKAFFATLKLDGKERTRGQGRTKKEAEHQAAR 235
Query: 235 VAYTALIER 243
L +R
Sbjct: 236 AMVEELSKR 244
>gi|157415855|ref|YP_001483111.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81116]
gi|283957021|ref|ZP_06374493.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1336]
gi|384442208|ref|YP_005658511.1| ribonuclease 3 [Campylobacter jejuni subsp. jejuni M1]
gi|415746574|ref|ZP_11475582.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 327]
gi|419641678|ref|ZP_14173557.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23357]
gi|419643328|ref|ZP_14175076.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ATCC 33560]
gi|419697815|ref|ZP_14225542.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23211]
gi|189043300|sp|A8FNU7.1|RNC_CAMJ8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|157386819|gb|ABV53134.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81116]
gi|283791522|gb|EFC30319.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1336]
gi|307748491|gb|ADN91761.1| Ribonuclease 3 [Campylobacter jejuni subsp. jejuni M1]
gi|315931680|gb|EFV10641.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 327]
gi|380616054|gb|EIB35273.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23357]
gi|380622316|gb|EIB41076.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ATCC 33560]
gi|380676845|gb|EIB91721.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23211]
Length = 224
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKTK+QE+ K P+Y T++ G DH +F+ ++ ++G +++ S KE+Q A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAG-SKKEAQQMA 213
Query: 61 AKLAF 65
AK+A
Sbjct: 214 AKIAL 218
>gi|51592098|ref|NP_604461.2| double-stranded RNA-binding protein Staufen homolog 2 isoform LS
(B) [Rattus norvegicus]
gi|47679383|gb|AAT36672.1| staufen2 spliceform LS [Rattus norvegicus]
gi|55715910|gb|AAH85705.1| Stau2 protein [Rattus norvegicus]
Length = 512
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 129 EFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN---VLHEL 182
EFF K + A H AA AL +L + E + DD K+ ++ E+
Sbjct: 156 EFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEI 215
Query: 183 SLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALI 241
+L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A T L
Sbjct: 216 ALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---ATTVLQ 270
Query: 242 ERKLIFSLP 250
E K + LP
Sbjct: 271 ELKKLPPLP 279
>gi|57238646|ref|YP_179777.1| ribonuclease III [Campylobacter jejuni RM1221]
gi|384443998|ref|YP_005660250.1| Ribonuclease III [Campylobacter jejuni subsp. jejuni S3]
gi|81353160|sp|Q5HSF8.1|RNC_CAMJR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|57167450|gb|AAW36229.1| ribonuclease III [Campylobacter jejuni RM1221]
gi|315059085|gb|ADT73414.1| Ribonuclease III [Campylobacter jejuni subsp. jejuni S3]
Length = 224
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKTK+QE+ K P+Y T++ G DH +F+ ++ ++G +++ S KE+Q A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAG-SKKEAQQMA 213
Query: 61 AKLAF 65
AK+A
Sbjct: 214 AKIAL 218
>gi|419694651|ref|ZP_14222609.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9872]
gi|380670012|gb|EIB85278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9872]
Length = 224
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKTK+QE+ K P+Y T++ G DH +F+ ++ ++G +++ S KE+Q A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAG-SKKEAQQMA 213
Query: 61 AKLAF 65
AK+A
Sbjct: 214 AKIAL 218
>gi|281353109|gb|EFB28693.1| hypothetical protein PANDA_013628 [Ailuropoda melanoleuca]
Length = 637
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 176 KNVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L LR GL + + G H P F VEV+G F G G TKKKA+M+AA+
Sbjct: 64 KNALVQLHDLRPGLQYRMVS--QTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAAE 120
Query: 235 VAYTALIE 242
+A + ++
Sbjct: 121 LALRSFVQ 128
>gi|91201952|emb|CAJ75012.1| similar to ribonuclease III [Candidatus Kuenenia stuttgartiensis]
Length = 236
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
YKS+LQ Y++++ +P Y +++ GP H SF+ V+I G + + K+ K+AE +A
Sbjct: 165 YKSILQQYSQKEYGITPTYRLLQQIGPDHGKSFEIVVSIKGSEY-GRGWGKSKKEAEQSA 223
Query: 142 AKVALFSLACD 152
AK AL L D
Sbjct: 224 AKEALKILTPD 234
>gi|86152963|ref|ZP_01071168.1| ribonuclease III [Campylobacter jejuni subsp. jejuni HB93-13]
gi|167006173|ref|ZP_02271931.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176]
gi|419617831|ref|ZP_14151397.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 129-258]
gi|419654145|ref|ZP_14185094.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-872]
gi|419665962|ref|ZP_14196014.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-7]
gi|419668873|ref|ZP_14198676.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-11]
gi|419687215|ref|ZP_14215623.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1798]
gi|419691430|ref|ZP_14219550.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1928]
gi|85843848|gb|EAQ61058.1| ribonuclease III [Campylobacter jejuni subsp. jejuni HB93-13]
gi|380596428|gb|EIB17120.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 129-258]
gi|380631711|gb|EIB49874.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-872]
gi|380642199|gb|EIB59482.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-7]
gi|380648273|gb|EIB65135.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-11]
gi|380662839|gb|EIB78523.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1798]
gi|380672387|gb|EIB87559.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1928]
Length = 224
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKTK+QE+ K P+Y T++ G DH +F+ ++ ++G +++ S KE+Q A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAG-SKKEAQQMA 213
Query: 61 AKLAF 65
AK+A
Sbjct: 214 AKIAL 218
>gi|426359916|ref|XP_004047202.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 3 [Gorilla gorilla gorilla]
Length = 570
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 113/278 (40%), Gaps = 44/278 (15%)
Query: 6 VQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLA 64
V EL R P+Y + + G H F +S+ ++ S S S K++Q A A
Sbjct: 13 VNELARFNRVQ-PQYKLLNERGPAHSKMFSVQLSLGEQTWESEGS--SIKKAQQAVANKA 69
Query: 65 FLHFTSPPP---PPPPNVQCRYKSV-----LQNYARRKNLDSPLYSSIREGPAHACSFKA 116
T P P PP NV S+ L A ++ + +Y + P +++A
Sbjct: 70 LTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRG-EPAIYRPL--DPKPFPNYRA 126
Query: 117 RVTIDGH-----------------TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQE 156
G T + EFF K + A H AA AL +L + E
Sbjct: 127 NYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPE 186
Query: 157 AIFLYAHVSMYLWDDGVFYKN---VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEV 212
+ DD K+ ++ E++L+ +PV +E IK G PHM +F++ V V
Sbjct: 187 RSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV 245
Query: 213 DGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLP 250
GE G +KK ++ +A A T L E K + LP
Sbjct: 246 -GEFSAEGEGNSKKLSKKRA---ATTVLQELKKLPPLP 279
>gi|288553095|ref|YP_003425030.1| ribonuclease III [Bacillus pseudofirmus OF4]
gi|288544255|gb|ADC48138.1| ribonuclease III [Bacillus pseudofirmus OF4]
Length = 263
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 148 SLACDDFQEAIFLYAHVSMY-LWDDGVF-----YKNVLHELSLREGLPVPLYETIK-CGA 200
+L D EA++ + +MY +DG F +K+ L E R+ L Y ++ G
Sbjct: 158 ALYLDQGLEAVYKFLSQTMYPKINDGAFSHMMDFKSQLQEFIQRDNLGQIQYVIVQEIGP 217
Query: 201 PHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERK 244
H F+S V+++ +GR+KK+AE AA+ A L E+K
Sbjct: 218 AHNREFVSEVQLNESKLGVGSGRSKKEAEQHAAQQALIKLSEKK 261
>gi|296270740|ref|YP_003653372.1| ribonuclease III [Thermobispora bispora DSM 43833]
gi|296093527|gb|ADG89479.1| ribonuclease III [Thermobispora bispora DSM 43833]
Length = 267
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ E L VP Y + G H +F++ V V G+ + GR+KK+AE +
Sbjct: 166 GLDWKTSLQELTAAESLGVPEYHVDESGPDHAKSFVATVRVGGKEYGKGTGRSKKEAEQQ 225
Query: 232 AAKVAYTAL 240
AA+ A+TA+
Sbjct: 226 AAEAAWTAI 234
>gi|86152331|ref|ZP_01070542.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 260.94]
gi|315125039|ref|YP_004067043.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
gi|85840820|gb|EAQ58071.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 260.94]
gi|315018761|gb|ADT66854.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
Length = 224
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKTK+QE+ K P+Y T++ G DH +F+ ++ ++G +++ S KE+Q A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAG-SKKEAQQMA 213
Query: 61 AKLAF 65
AK+A
Sbjct: 214 AKIAL 218
>gi|338721506|ref|XP_001917073.2| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
editase B2-like [Equus caballus]
Length = 734
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 176 KNVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L LR GL + + G H P F VEV+G F G G TKKKA+M+AA+
Sbjct: 127 KNALVQLHELRPGLQYRMVS--QTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAAE 183
Query: 235 VAYTALIE 242
+A + ++
Sbjct: 184 LALRSFVQ 191
>gi|291388129|ref|XP_002710683.1| PREDICTED: staufen homolog 2 isoform 1 [Oryctolagus cuniculus]
Length = 570
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 113/278 (40%), Gaps = 44/278 (15%)
Query: 6 VQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLA 64
V EL R P+Y + + G H F +S+ ++ S S S K++Q A A
Sbjct: 13 VNELARFNRVQ-PQYKLLNESGPAHSKMFSVQLSLGEQTWESEGS--SIKKAQQAVANKA 69
Query: 65 FLHFTSPPP---PPPPNVQCRYKSV-----LQNYARRKNLDSPLYSSIREGPAHACSFKA 116
T P P PP NV S+ L A ++ + +Y + P +++A
Sbjct: 70 LTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRG-EPAIYRPL--DPKPFPNYRA 126
Query: 117 RVTIDGH-----------------TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQE 156
G T + EFF K + A H AA AL +L + E
Sbjct: 127 NYNFRGMYNQRYHCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPE 186
Query: 157 AIFLYAHVSMYLWDDGVFYKN---VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEV 212
+ DD K+ ++ E++L+ +PV +E IK G PHM +F++ V V
Sbjct: 187 KSPQNGESGKEVDDDKDANKSEISLVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV 245
Query: 213 DGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLP 250
GE G +KK ++ +A A T L E K + LP
Sbjct: 246 -GEFSAEGEGNSKKLSKKRA---ATTVLQELKKLPPLP 279
>gi|242045250|ref|XP_002460496.1| hypothetical protein SORBIDRAFT_02g029450 [Sorghum bicolor]
gi|241923873|gb|EER97017.1| hypothetical protein SORBIDRAFT_02g029450 [Sorghum bicolor]
Length = 123
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%)
Query: 101 YSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLA 150
Y EGP H F+A VT + TFE L+QAEHAAA+V L L+
Sbjct: 10 YVCTPEGPDHTPRFRAAVTFNSETFEGPSGCTTLRQAEHAAAEVTLARLS 59
>gi|397522635|ref|XP_003831365.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 4 [Pan paniscus]
gi|73919458|sp|Q9NUL3.1|STAU2_HUMAN RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2
gi|23507039|gb|AAN37926.1|AF459097_1 double-stranded RNA-binding protein Staufen2 long isoform [Homo
sapiens]
gi|7023858|dbj|BAA92111.1| unnamed protein product [Homo sapiens]
gi|119607410|gb|EAW87004.1| staufen, RNA binding protein, homolog 2 (Drosophila), isoform CRA_b
[Homo sapiens]
gi|119607413|gb|EAW87007.1| staufen, RNA binding protein, homolog 2 (Drosophila), isoform CRA_b
[Homo sapiens]
Length = 570
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 113/278 (40%), Gaps = 44/278 (15%)
Query: 6 VQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLA 64
V EL R P+Y + + G H F +S+ ++ S S S K++Q A A
Sbjct: 13 VNELARFNRVQ-PQYKLLNERGPAHSKMFSVQLSLGEQTWESEGS--SIKKAQQAVANKA 69
Query: 65 FLHFTSPPP---PPPPNVQCRYKSV-----LQNYARRKNLDSPLYSSIREGPAHACSFKA 116
T P P PP NV S+ L A ++ + +Y + P +++A
Sbjct: 70 LTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRG-EPAIYRPL--DPKPFPNYRA 126
Query: 117 RVTIDGH-----------------TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQE 156
G T + EFF K + A H AA AL +L + E
Sbjct: 127 NYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPE 186
Query: 157 AIFLYAHVSMYLWDDGVFYKN---VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEV 212
+ DD K+ ++ E++L+ +PV +E IK G PHM +F++ V V
Sbjct: 187 RSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV 245
Query: 213 DGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLP 250
GE G +KK ++ +A A T L E K + LP
Sbjct: 246 -GEFSAEGEGNSKKLSKKRA---ATTVLQELKKLPPLP 279
>gi|302338403|ref|YP_003803609.1| ribonuclease III [Spirochaeta smaragdinae DSM 11293]
gi|301635588|gb|ADK81015.1| ribonuclease III [Spirochaeta smaragdinae DSM 11293]
Length = 244
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKT +QE ++ S PRYS +K G DHD F V ++G + K+ KE++ A
Sbjct: 173 YKTLLQEYVQKQFKSYPRYSLVKKTGPDHDRTFWIEVKIDG-KVYGPGKGKNKKEAEQHA 231
Query: 61 AKLAFLHFTS 70
A LA+ T
Sbjct: 232 AGLAYRKLTG 241
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK +L E ++ P Y +K P H TF V++DG+V+ G+ KK+AE AA
Sbjct: 173 YKTLLQEYVQKQFKSYPRYSLVKKTGPDHDRTFWIEVKIDGKVYGPGKGKNKKEAEQHAA 232
Query: 234 KVAYTAL 240
+AY L
Sbjct: 233 GLAYRKL 239
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
YK++LQ Y +++ P YS +++ GP H +F V IDG + + KN K+AE A
Sbjct: 173 YKTLLQEYVQKQFKSYPRYSLVKKTGPDHDRTFWIEVKIDGKVYGPGK-GKNKKEAEQHA 231
Query: 142 AKVALFSLACDD 153
A +A L ++
Sbjct: 232 AGLAYRKLTGEE 243
>gi|19526446|gb|AAL89719.1|AF483621_1 RNA-binding protein staufen splice form B [Rattus norvegicus]
Length = 512
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 129 EFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN---VLHEL 182
EFF K + A H AA AL +L + E + DD K+ ++ E+
Sbjct: 156 EFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEI 215
Query: 183 SLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALI 241
+L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A T L
Sbjct: 216 ALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---ATTVLQ 270
Query: 242 ERKLIFSLP 250
E K + LP
Sbjct: 271 ELKKLPPLP 279
>gi|419542137|ref|ZP_14081268.1| ribonuclease III [Campylobacter coli 2548]
gi|380523896|gb|EIA49530.1| ribonuclease III [Campylobacter coli 2548]
Length = 224
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKTK+QE+ K P+Y T++ G DH +F+ ++ ++G +++ S KE+Q A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAG-SKKEAQQMA 213
Query: 61 AKLAF 65
AK+A
Sbjct: 214 AKIAL 218
>gi|299821773|ref|ZP_07053661.1| ribonuclease III [Listeria grayi DSM 20601]
gi|299817438|gb|EFI84674.1| ribonuclease III [Listeria grayi DSM 20601]
Length = 230
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 170 DDGVFYKNVLHELSLREGLP-----VPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGR 223
D G F + V H+ L+E + + Y+ ++ P H F + V V+G++ GR
Sbjct: 150 DTGAFLETVDHKTQLQEIVQRDRDVLIQYDILEESGPAHSKAFEAQVVVNGQMLGRGEGR 209
Query: 224 TKKKAEMKAAKVAYTALIERK 244
TKK+AE AAK A L+ RK
Sbjct: 210 TKKQAEQNAAKEAINKLLHRK 230
>gi|162287083|ref|NP_001104742.1| double-stranded RNA-binding protein Staufen homolog 2 isoform 2
[Mus musculus]
gi|23507045|gb|AAN37929.1|AF459100_1 double-stranded RNA-binding protein Staufen2 short isoform [Mus
musculus]
Length = 538
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 119 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEIS 178
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 179 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 233
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 234 TTVLQELKKLPPLP 247
>gi|297343244|pdb|3N3W|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Nuclease
Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni
gi|297343245|pdb|3N3W|B Chain B, 2.2 Angstrom Resolution Crystal Structure Of Nuclease
Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni
Length = 248
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKTK+QE+ K P+Y T++ G DH +F+ ++ ++G +++ S KE+Q A
Sbjct: 179 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAG-SKKEAQQMA 237
Query: 61 AKLAF 65
AK+A
Sbjct: 238 AKIAL 242
>gi|242069681|ref|XP_002450117.1| hypothetical protein SORBIDRAFT_05g000790 [Sorghum bicolor]
gi|241935960|gb|EES09105.1| hypothetical protein SORBIDRAFT_05g000790 [Sorghum bicolor]
Length = 292
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 176 KNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKV 235
KN+L E + + +P Y C FI VE+ G ++ G A RTKK AE+KAA+
Sbjct: 94 KNLLQEYAQKMNYAIPSY---ICTKQASGPFICSVEIGGILYIGAAARTKKGAEIKAART 150
Query: 236 AYTAL 240
A A+
Sbjct: 151 ALLAI 155
>gi|380783241|gb|AFE63496.1| double-stranded RNA-binding protein Staufen homolog 2 isoform a
[Macaca mulatta]
gi|383408741|gb|AFH27584.1| double-stranded RNA-binding protein Staufen homolog 2 isoform a
[Macaca mulatta]
Length = 570
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 113/278 (40%), Gaps = 44/278 (15%)
Query: 6 VQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLA 64
V EL R P+Y + + G H F +S+ ++ S S S K++Q A A
Sbjct: 13 VNELARFNRVQ-PQYKLLNERGPAHSKMFSVQLSLGEQTWESEGS--SIKKAQQAVANKA 69
Query: 65 FLHFTSPPP---PPPPNVQCRYKSV-----LQNYARRKNLDSPLYSSIREGPAHACSFKA 116
T P P PP NV S+ L A ++ + +Y + P +++A
Sbjct: 70 LTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRG-EPAIYRPL--DPKPFPNYRA 126
Query: 117 RVTIDGH-----------------TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQE 156
G T + EFF K + A H AA AL +L + E
Sbjct: 127 NYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPE 186
Query: 157 AIFLYAHVSMYLWDDGVFYKN---VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEV 212
+ DD K+ ++ E++L+ +PV +E IK G PHM +F++ V V
Sbjct: 187 RSPQSGESGKDMDDDKDANKSEISLVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV 245
Query: 213 DGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLP 250
GE G +KK ++ +A A T L E K + LP
Sbjct: 246 -GEFSAEGEGNSKKLSKKRA---ATTVLQELKKLPPLP 279
>gi|333997795|ref|YP_004530407.1| ribonuclease III [Treponema primitia ZAS-2]
gi|333741278|gb|AEF86768.1| ribonuclease III [Treponema primitia ZAS-2]
Length = 283
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 175 YKNVLHELSLREGL--PVPLYETIKCGAPHMPTFISM-VEVDGEVFYGKAGRTKKKAEMK 231
YK++L EL+ +GL P+Y +K P F + V V+G+ F GR KK AE +
Sbjct: 205 YKSLLQELT--QGLYRNYPVYRVLKRSGPEHDRFFWIEVSVEGKTFGPGMGRNKKAAEQE 262
Query: 232 AAKVAYTALIERK 244
AA++AY + + K
Sbjct: 263 AARIAYEEIGDTK 275
>gi|332240606|ref|XP_003269478.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 1 [Nomascus leucogenys]
Length = 570
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 113/278 (40%), Gaps = 44/278 (15%)
Query: 6 VQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLA 64
V EL R P+Y + + G H F +S+ ++ S S S K++Q A A
Sbjct: 13 VNELARFNRVQ-PQYKLLNERGPAHSKMFSVQLSLGEQTWESEGS--SIKKAQQAVANKA 69
Query: 65 FLHFTSPPP---PPPPNVQCRYKSV-----LQNYARRKNLDSPLYSSIREGPAHACSFKA 116
T P P PP NV S+ L A ++ + +Y + P +++A
Sbjct: 70 LTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRG-EPAIYRPL--DPKPFPNYRA 126
Query: 117 RVTIDGH-----------------TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQE 156
G T + EFF K + A H AA AL +L + E
Sbjct: 127 NYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPE 186
Query: 157 AIFLYAHVSMYLWDDGVFYKN---VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEV 212
+ DD K+ ++ E++L+ +PV +E IK G PHM +F++ V V
Sbjct: 187 RSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPVS-FEVIKESGPPHMKSFVTRVSV 245
Query: 213 DGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLP 250
GE G +KK ++ +A A T L E K + LP
Sbjct: 246 -GEFSAEGEGNSKKLSKKRA---ATTVLQELKKLPPLP 279
>gi|183221945|ref|YP_001839941.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
gi|189912013|ref|YP_001963568.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167776689|gb|ABZ94990.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167780367|gb|ABZ98665.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
Length = 242
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKT +QE C +K LP Y +K +G DHD F SVS F S+ K+ + ++ A
Sbjct: 173 YKTILQEYCQKKWKKLPEYILLKEEGPDHDKDFSVSVSCENY-FQSNGDGKNKRRAEQMA 231
Query: 61 AKLAF 65
AK A
Sbjct: 232 AKAAL 236
Score = 38.1 bits (87), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIR-EGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
YK++LQ Y ++K P Y ++ EGP H F V+ + + F+S KN ++AE A
Sbjct: 173 YKTILQEYCQKKWKKLPEYILLKEEGPDHDKDFSVSVSCENY-FQSNGDGKNKRRAEQMA 231
Query: 142 AKVAL 146
AK AL
Sbjct: 232 AKAAL 236
>gi|297299584|ref|XP_001084686.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 4 [Macaca mulatta]
Length = 570
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 113/278 (40%), Gaps = 44/278 (15%)
Query: 6 VQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLA 64
V EL R P+Y + + G H F +S+ ++ S S S K++Q A A
Sbjct: 13 VNELARFNRVQ-PQYKLLNERGPAHSKMFSVQLSLGEQTWESEGS--SIKKAQQAVANKA 69
Query: 65 FLHFTSPPP---PPPPNVQCRYKSV-----LQNYARRKNLDSPLYSSIREGPAHACSFKA 116
T P P PP NV S+ L A ++ + +Y + P +++A
Sbjct: 70 LTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRG-EPAIYRPL--DPKPFPNYRA 126
Query: 117 RVTIDGH-----------------TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQE 156
G T + EFF K + A H AA AL +L + E
Sbjct: 127 NYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPE 186
Query: 157 AIFLYAHVSMYLWDDGVFYKN---VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEV 212
+ DD K+ ++ E++L+ +PV +E IK G PHM +F++ V V
Sbjct: 187 RSPQSGESGKDMDDDKDANKSEISLVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV 245
Query: 213 DGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLP 250
GE G +KK ++ +A A T L E K + LP
Sbjct: 246 -GEFSAEGEGNSKKLSKKRA---ATTVLQELKKLPPLP 279
>gi|194018455|ref|NP_079579.2| double-stranded RNA-binding protein Staufen homolog 2 isoform 3
[Mus musculus]
gi|73919459|sp|Q8CJ67.1|STAU2_MOUSE RecName: Full=Double-stranded RNA-binding protein Staufen homolog 2
gi|23507043|gb|AAN37928.1|AF459099_1 double-stranded RNA-binding protein Staufen2 long isoform [Mus
musculus]
Length = 570
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 151 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEIS 210
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 211 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 265
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 266 TTVLQELKKLPPLP 279
>gi|333995527|ref|YP_004528140.1| ribonuclease III [Treponema azotonutricium ZAS-9]
gi|333737229|gb|AEF83178.1| ribonuclease III [Treponema azotonutricium ZAS-9]
Length = 228
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYG-KAGRTKKKAEMKAA 233
YK++L EL R P+Y +K P M + ++ YG GR KK AE +AA
Sbjct: 156 YKSLLQELCQRLYHNYPVYRLLKRSGPDHARLFWMEVIVSDIAYGPGTGRNKKTAEQEAA 215
Query: 234 KVAYTAL 240
K+AY AL
Sbjct: 216 KMAYEAL 222
>gi|330993372|ref|ZP_08317307.1| Ribonuclease 3 [Gluconacetobacter sp. SXCC-1]
gi|329759402|gb|EGG75911.1| Ribonuclease 3 [Gluconacetobacter sp. SXCC-1]
Length = 258
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 57/147 (38%), Gaps = 23/147 (15%)
Query: 107 GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA-AKVALFSLACDDFQEAIF--LYAH 163
GP HA T+ ++ L AEH A A V + D EAI +Y
Sbjct: 91 GPRHAHLVSR--TVLAEVAHAMALQSALDVAEHEARAGVRQMANVLADAVEAILGAIYLD 148
Query: 164 VSM--------YLWDDGVFY--------KNVLHELSLREGLPVPLYETIKCGAP-HMPTF 206
+ +W D + K L E L GLP+P Y + P H P F
Sbjct: 149 GGLDPARAFVRRMWQDAIVAQARPPKDPKTALQEWVLGRGLPLPRYRVVSAEGPSHAPRF 208
Query: 207 ISMVEVDGEVFYGKAGRTKKKAEMKAA 233
+ V+ G+ G AG +K+ AE AA
Sbjct: 209 VIAVDAQGKTGQGVAG-SKRAAESDAA 234
>gi|410955477|ref|XP_003984379.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase [Felis catus]
Length = 542
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 87 LQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVAL 146
L Y ++ N+ + GP H FK +V ID + E K+ K+A +AAAK+A+
Sbjct: 14 LNVYCQKHNMVLKYQELSKTGPPHNLRFKYQVIIDEREYPEAEG-KSKKEARNAAAKLAI 72
Query: 147 FSLACDD--FQEAIFLYAHVS--MYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
L ++ H S + L G F + + L+ +E L V YE + P
Sbjct: 73 EILNKENKAVSSVSLPTTHSSEGLGLGSTGNFIGRI-NRLAQKEQLSVN-YEQCELKEPG 130
Query: 203 MPTFISMVEVDGEVFYG-KAGRTKKKAEMKAAKVAYTALIERK 244
F ++ G+ YG G TK++A+ AAK+AY ++ K
Sbjct: 131 PERFHYRCKI-GQKEYGIGVGSTKQEAKQSAAKLAYEQILSEK 172
>gi|239826585|ref|YP_002949209.1| ribonuclease III [Geobacillus sp. WCH70]
gi|259491901|sp|C5D8T6.1|RNC_GEOSW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|239806878|gb|ACS23943.1| ribonuclease III [Geobacillus sp. WCH70]
Length = 246
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 148 SLACDDFQEAIFLYAHVSMY-LWDDGVF-----YKNVLHELSLREGLPVPLYETIKCGAP 201
+L D +A+ + +++ D+G F +K+ L EL R+G+ V Y ++ P
Sbjct: 141 ALYLDQGMDAVMQFLGQTIFPKIDEGAFSHVMDFKSQLQELVQRDGIGVLEYSILEEKGP 200
Query: 202 -HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
H F+S V ++G+ G++KK+AE AA++A L
Sbjct: 201 AHNKEFVSRVSLNGQELGIGVGKSKKEAEQHAAQMALQKL 240
>gi|93278801|pdb|2B7T|A Chain A, Structure Of Adar2 Dsrbm1
Length = 73
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 4 VLPKNALMQLNEIKPGLQYMLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 60
Query: 232 AAKVAYTALIE 242
AA+ A + ++
Sbjct: 61 AAEKALRSFVQ 71
>gi|398350685|ref|YP_006396149.1| ribonuclease 3 [Sinorhizobium fredii USDA 257]
gi|390126011|gb|AFL49392.1| ribonuclease 3 [Sinorhizobium fredii USDA 257]
Length = 239
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 3 KTKVQELCHQKRWSLPRYSTM-KDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
KT++QE H K PRY T + G DHDPRF +V V+G++ S Q A
Sbjct: 164 KTELQEWAHAKFGVAPRYRTDDRSGPDHDPRFTVTVEVDGITSESGTDRSKRGAEQIAAM 223
Query: 62 KL 63
+L
Sbjct: 224 RL 225
>gi|148682397|gb|EDL14344.1| staufen (RNA binding protein) homolog 2 (Drosophila), isoform CRA_b
[Mus musculus]
Length = 402
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 109/266 (40%), Gaps = 43/266 (16%)
Query: 18 PRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPPP--- 73
P+Y + + G H F +S+ ++ S S S K++Q A A T P P
Sbjct: 24 PQYKLLNESGPAHSKMFSVQLSLGEQTWESEGS--SIKKAQQAVANKALTESTLPKPVQK 81
Query: 74 PPPPNVQCRYKSV-----LQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGH----- 123
PP NV S+ L A ++ + +Y + P +++A G
Sbjct: 82 PPKSNVNNNPGSITPTVELNGLAMKRG-EPAIYRPL--DPKPFPNYRANYNFRGMYNQRY 138
Query: 124 ------------TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYL 168
T + EFF K + A H AA AL +L + E +
Sbjct: 139 HCPMPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEM 198
Query: 169 WDDGVFYKN---VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRT 224
DD K+ ++ E++L+ +PV +E IK G PHM +F++ V V GE G +
Sbjct: 199 DDDKDANKSEISLVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNS 256
Query: 225 KKKAEMKAAKVAYTALIERKLIFSLP 250
KK ++ +A A T L E K + LP
Sbjct: 257 KKLSKKRA---ATTVLQELKKLPPLP 279
>gi|149060896|gb|EDM11506.1| rCG30397, isoform CRA_b [Rattus norvegicus]
gi|149060897|gb|EDM11507.1| rCG30397, isoform CRA_b [Rattus norvegicus]
gi|149060898|gb|EDM11508.1| rCG30397, isoform CRA_b [Rattus norvegicus]
gi|149060899|gb|EDM11509.1| rCG30397, isoform CRA_b [Rattus norvegicus]
Length = 467
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 47 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEIS 106
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 107 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 161
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 162 TTVLQELKKLPPLP 175
>gi|153951733|ref|YP_001398912.1| ribonuclease III [Campylobacter jejuni subsp. doylei 269.97]
gi|189043301|sp|A7H5Y2.1|RNC_CAMJD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|152939179|gb|ABS43920.1| ribonuclease III [Campylobacter jejuni subsp. doylei 269.97]
Length = 225
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKTK+QE+ K P+Y T++ G DH +F+ ++ ++G +++ S KE+Q A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAG-SKKEAQQMA 213
Query: 61 AKLAF 65
AK+A
Sbjct: 214 AKIAL 218
>gi|419622547|ref|ZP_14155777.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23216]
gi|380599261|gb|EIB19635.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23216]
Length = 224
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKTK+QE+ K P+Y T++ G DH +F+ ++ ++G +++ S KE+Q A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALILDGKELARAIAG-SKKEAQQMA 213
Query: 61 AKLAF 65
AK+A
Sbjct: 214 AKIAL 218
>gi|55741784|ref|NP_001007151.1| double-stranded RNA-binding protein Staufen homolog 2 isoform SS
[Rattus norvegicus]
gi|47679379|gb|AAT36670.1| staufen2 spliceform SS [Rattus norvegicus]
gi|52001197|gb|AAU21479.1| double-stranded RNA binding protein staufen 2 52 kDa isoform
[Rattus norvegicus]
Length = 480
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 129 EFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN---VLHEL 182
EFF K + A H AA AL +L + E + DD K+ ++ E+
Sbjct: 124 EFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEI 183
Query: 183 SLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALI 241
+L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A T L
Sbjct: 184 ALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---ATTVLQ 238
Query: 242 ERKLIFSLP 250
E K + LP
Sbjct: 239 ELKKLPPLP 247
>gi|19264083|gb|AAH25118.1| Stau2 protein [Mus musculus]
Length = 479
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 119 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEIS 178
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 179 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 233
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 234 TTVLQELKKLPPLP 247
>gi|410963123|ref|XP_003988115.1| PREDICTED: double-stranded RNA-specific editase B2 [Felis catus]
Length = 729
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 176 KNVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L LR GL + + G H P F VEV+G F G G TKKKA+M+AA+
Sbjct: 121 KNALVQLHDLRPGLQYRMVS--QTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAAE 177
Query: 235 VAYTALIE 242
+A + ++
Sbjct: 178 LALRSFVQ 185
>gi|327274458|ref|XP_003221994.1| PREDICTED: double-stranded RNA-specific editase B2-like [Anolis
carolinensis]
Length = 714
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 176 KNVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L L+ GL + + G H P F VEV+G F G G TKKKA+M+AA+
Sbjct: 100 KNALVQLHELKPGLQYKMVS--QTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAAE 156
Query: 235 VAYTALIE 242
+A + I+
Sbjct: 157 LALKSFIQ 164
>gi|119607409|gb|EAW87003.1| staufen, RNA binding protein, homolog 2 (Drosophila), isoform CRA_a
[Homo sapiens]
Length = 549
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 113/278 (40%), Gaps = 44/278 (15%)
Query: 6 VQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLA 64
V EL R P+Y + + G H F +S+ ++ S S S K++Q A A
Sbjct: 13 VNELARFNRVQ-PQYKLLNERGPAHSKMFSVQLSLGEQTWESEGS--SIKKAQQAVANKA 69
Query: 65 FLHFTSPPP---PPPPNVQCRYKSV-----LQNYARRKNLDSPLYSSIREGPAHACSFKA 116
T P P PP NV S+ L A ++ + +Y + P +++A
Sbjct: 70 LTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRG-EPAIYRPL--DPKPFPNYRA 126
Query: 117 RVTIDGH-----------------TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQE 156
G T + EFF K + A H AA AL +L + E
Sbjct: 127 NYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPE 186
Query: 157 AIFLYAHVSMYLWDDGVFYKN---VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEV 212
+ DD K+ ++ E++L+ +PV +E IK G PHM +F++ V V
Sbjct: 187 RSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV 245
Query: 213 DGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLP 250
GE G +KK ++ +A A T L E K + LP
Sbjct: 246 -GEFSAEGEGNSKKLSKKRA---ATTVLQELKKLPPLP 279
>gi|114620488|ref|XP_001165116.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 1 [Pan troglodytes]
gi|410260220|gb|JAA18076.1| staufen, RNA binding protein, homolog 2 [Pan troglodytes]
Length = 570
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 113/278 (40%), Gaps = 44/278 (15%)
Query: 6 VQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLA 64
V EL R P+Y + + G H F +S+ ++ S S S K++Q A A
Sbjct: 13 VNELARFNRVQ-PQYKLLNERGPAHSKMFSVQLSLGEQTWESEGS--SIKKAQQAVASKA 69
Query: 65 FLHFTSPPP---PPPPNVQCRYKSV-----LQNYARRKNLDSPLYSSIREGPAHACSFKA 116
T P P PP NV S+ L A ++ + +Y + P +++A
Sbjct: 70 LTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRG-EPAIYRPL--DPKPFPNYRA 126
Query: 117 RVTIDGH-----------------TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQE 156
G T + EFF K + A H AA AL +L + E
Sbjct: 127 NYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPE 186
Query: 157 AIFLYAHVSMYLWDDGVFYKN---VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEV 212
+ DD K+ ++ E++L+ +PV +E IK G PHM +F++ V V
Sbjct: 187 RSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV 245
Query: 213 DGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLP 250
GE G +KK ++ +A A T L E K + LP
Sbjct: 246 -GEFSAEGEGNSKKLSKKRA---ATTVLQELKKLPPLP 279
>gi|283953747|ref|ZP_06371278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 414]
gi|283794788|gb|EFC33526.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 414]
Length = 224
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKTK+QE+ K P+Y T++ G DH +F+ ++ ++G +++ S KE+Q A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKEIARAIAG-SKKEAQQMA 213
Query: 61 AKLAF 65
AK+A
Sbjct: 214 AKIAL 218
>gi|348588699|ref|XP_003480102.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
2-like isoform 2 [Cavia porcellus]
Length = 504
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 47 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSAQNGESGKEMDDDKDANKSEIS 106
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 107 LVFEIALKRNMPVS-FEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 161
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 162 TTVLQELKKLPPLP 175
>gi|345793127|ref|XP_860148.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 3 [Canis lupus familiaris]
Length = 538
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 119 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEIS 178
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 179 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 233
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 234 TTVLQELKKLPPLP 247
>gi|338728175|ref|XP_003365629.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 2 [Equus caballus]
Length = 537
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 119 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEIS 178
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 179 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 233
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 234 TTVLQELKKLPPLP 247
>gi|149060895|gb|EDM11505.1| rCG30397, isoform CRA_a [Rattus norvegicus]
Length = 408
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 129 EFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN---VLHEL 182
EFF K + A H AA AL +L + E + DD K+ ++ E+
Sbjct: 52 EFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEI 111
Query: 183 SLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALI 241
+L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A T L
Sbjct: 112 ALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---ATTVLQ 166
Query: 242 ERKLIFSLP 250
E K + LP
Sbjct: 167 ELKKLPPLP 175
>gi|148259270|ref|YP_001233397.1| ribonuclease III [Acidiphilium cryptum JF-5]
gi|338980768|ref|ZP_08632022.1| Ribonuclease III [Acidiphilium sp. PM]
gi|146400951|gb|ABQ29478.1| RNAse III [Acidiphilium cryptum JF-5]
gi|338208293|gb|EGO96162.1| Ribonuclease III [Acidiphilium sp. PM]
Length = 221
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 70 SPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSI-REGPAHACSFKARVTIDGHTFESL 128
S PP P K+ LQ YA + P Y + R GP+HA F+ RVT+ G T E L
Sbjct: 149 SAPPKDP-------KTALQEYALARGPVLPAYELVERTGPSHAPRFRIRVTVAGRTAEGL 201
Query: 129 EFFKNLKQAEHAAAKVALFSL 149
K ++AE AA+ L L
Sbjct: 202 AGTK--REAEQNAARDLLEQL 220
>gi|2500552|sp|Q52698.1|RNC_RHOCA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|1177610|emb|CAA92647.1| endoribonuclease III [Rhodobacter capsulatus]
Length = 228
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 176 KNVLHELSLREGLPVPLYETI-KCGAPHMPTF-ISMVEVDGEVFYGKAGRTKKKAEMKAA 233
K L E + GLP P YET+ + G H P F I++V GE +AG +K+ AE AA
Sbjct: 159 KTALQEWAQARGLPPPRYETLGRDGPDHAPQFRIAVVLASGETEEAQAG-SKRNAEQAAA 217
Query: 234 KVAYTALIER 243
K AL+ER
Sbjct: 218 K----ALLER 223
>gi|380811744|gb|AFE77747.1| double-stranded RNA-binding protein Staufen homolog 2 isoform a
[Macaca mulatta]
Length = 608
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 113/278 (40%), Gaps = 44/278 (15%)
Query: 6 VQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLA 64
V EL R P+Y + + G H F +S+ ++ S S S K++Q A A
Sbjct: 13 VNELARFNRVQ-PQYKLLNERGPAHSKMFSVQLSLGEQTWESEGS--SIKKAQQAVANKA 69
Query: 65 FLHFTSPPP---PPPPNVQCRYKSV-----LQNYARRKNLDSPLYSSIREGPAHACSFKA 116
T P P PP NV S+ L A ++ + +Y + P +++A
Sbjct: 70 LTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRG-EPAIYRPL--DPKPFPNYRA 126
Query: 117 RVTIDGH-----------------TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQE 156
G T + EFF K + A H AA AL +L + E
Sbjct: 127 NYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPE 186
Query: 157 AIFLYAHVSMYLWDDGVFYKN---VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEV 212
+ DD K+ ++ E++L+ +PV +E IK G PHM +F++ V V
Sbjct: 187 RSPQSGESGKDMDDDKDANKSEISLVFEIALKRNMPVS-FEVIKESGPPHMKSFVTRVSV 245
Query: 213 DGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLP 250
GE G +KK ++ +A A T L E K + LP
Sbjct: 246 -GEFSAEGEGNSKKLSKKRA---ATTVLQELKKLPPLP 279
>gi|312111708|ref|YP_003990024.1| ribonuclease III [Geobacillus sp. Y4.1MC1]
gi|336236083|ref|YP_004588699.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93]
gi|423720626|ref|ZP_17694808.1| ribonuclease III [Geobacillus thermoglucosidans TNO-09.020]
gi|311216809|gb|ADP75413.1| ribonuclease III [Geobacillus sp. Y4.1MC1]
gi|335362938|gb|AEH48618.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93]
gi|383365979|gb|EID43270.1| ribonuclease III [Geobacillus thermoglucosidans TNO-09.020]
Length = 246
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 148 SLACDDFQEAIFLYAHVSMY-LWDDGVF-----YKNVLHELSLREGLPVPLYETIKCGAP 201
+L D +A+ + +++ D+G F +K+ L EL R+G+ V Y ++ P
Sbjct: 141 ALYLDKGMDAVMQFLGQTIFPKIDEGAFSHVMDFKSQLQELVQRDGIGVLEYSILEEKGP 200
Query: 202 -HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
H F+S V ++G+ G++KK+AE AA++A L
Sbjct: 201 AHNKEFVSRVSLNGQELGIGVGKSKKEAEQHAAQMALQKL 240
>gi|338728177|ref|XP_003365630.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 3 [Equus caballus]
Length = 478
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 119 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEIS 178
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 179 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 233
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 234 TTVLQELKKLPPLP 247
>gi|410987299|ref|XP_003999942.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 1 [Felis catus]
Length = 479
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 119 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEIS 178
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 179 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 233
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 234 TTVLQELKKLPPLP 247
>gi|355698029|gb|EHH28577.1| Double-stranded RNA-binding protein Staufen-like protein 2, partial
[Macaca mulatta]
Length = 534
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 11/141 (7%)
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGV 173
F ++T+ + F L K + A H AA AL +L + E + DD
Sbjct: 110 FYVQLTVGNNEF--LGEGKTRQAARHNAAMKALQALQNEPIPERSPQSGESGKDMDDDKD 167
Query: 174 FYKN---VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAE 229
K+ ++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++
Sbjct: 168 ANKSEISLVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSK 225
Query: 230 MKAAKVAYTALIERKLIFSLP 250
+A A T L E K + LP
Sbjct: 226 KRA---ATTVLQELKKLPPLP 243
>gi|390480854|ref|XP_002763865.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog
2-like [Callithrix jacchus]
Length = 491
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 11/141 (7%)
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGV 173
F ++T+ + F L K + A H AA AL +L + E + DD
Sbjct: 126 FYVQLTVGNNEF--LGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKDMDDDKD 183
Query: 174 FYKN---VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAE 229
K+ ++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++
Sbjct: 184 ANKSEISLVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSK 241
Query: 230 MKAAKVAYTALIERKLIFSLP 250
+A A T L E K + LP
Sbjct: 242 KRA---ATTVLQELKKLPPLP 259
>gi|301782463|ref|XP_002926647.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
2-like [Ailuropoda melanoleuca]
Length = 576
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 119 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEIS 178
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 179 LVFEIALKRNMPVS-FEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 233
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 234 TTVLQELKKLPPLP 247
>gi|256418995|ref|NP_001157852.1| double-stranded RNA-binding protein Staufen homolog 2 isoform a
[Homo sapiens]
Length = 570
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 113/278 (40%), Gaps = 44/278 (15%)
Query: 6 VQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLA 64
V EL R P+Y + + G H F +S+ ++ S S S K++Q A A
Sbjct: 13 VNELARFNRVQ-PQYKLLNERGPAHSKMFSVQLSLGEQTWESEGS--SIKKAQQAVANKA 69
Query: 65 FLHFTSPPP---PPPPNVQCRYKSV-----LQNYARRKNLDSPLYSSIREGPAHACSFKA 116
T P P PP NV S+ L A ++ + +Y + P +++A
Sbjct: 70 LTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRG-EPAIYRPL--DPKPFPNYRA 126
Query: 117 RVTIDGH-----------------TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQE 156
G T + EFF K + A H AA AL +L + E
Sbjct: 127 NYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPE 186
Query: 157 AIFLYAHVSMYLWDDGVFYKN---VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEV 212
+ DD K+ ++ E++L+ +PV +E IK G PHM +F++ V V
Sbjct: 187 RSPQNGESGKDVDDDKDANKSEISLVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV 245
Query: 213 DGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLP 250
GE G +KK ++ +A A T L E K + LP
Sbjct: 246 -GEFSAEGEGNSKKLSKKRA---ATTVLQELKKLPPLP 279
>gi|240142575|ref|YP_002967088.1| hypothetical protein MexAM1_META2p0952 [Methylobacterium extorquens
AM1]
gi|240012522|gb|ACS43747.1| Hypothetical protein MexAM1_META2p0952 [Methylobacterium extorquens
AM1]
Length = 690
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 100/255 (39%), Gaps = 27/255 (10%)
Query: 15 WSLPRYSTMKDGADHDPRFKSS--VSVNGLSFHSSVSCKSSKESQNDAAKLAFL------ 66
WS P +S + G H P F S ++V G + + + +++ AA + +
Sbjct: 428 WSQPDFSEQRAGPPHAPVFACSGRMTVAGAELVTPLVVRPTRKGAQHAAGVHLVAAVAGI 487
Query: 67 ----------HFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKA 116
SP P P + ++ LQ Y +P Y GP H F+A
Sbjct: 488 EVPETAEPPVQVPSPRPAPAAGPELNPRNRLQEYCAGAKHPAPTYEVSERGPPHDRVFEA 547
Query: 117 RVTI--DGHTFESLEF-FKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGV 173
T+ G T S ++ K+AE AAA L + ++ A + D
Sbjct: 548 VATVRVGGRTISSPSASARSKKEAEKAAAVAMLVLMGLEEPGAADPPSPAAAAPPAADVD 607
Query: 174 FYKNVLHELSLRE-GLPVPLYETIKCGAPHMPTFISMVEVDGE----VFYGKAGRTKKKA 228
E + R+ P+P +E G H PTF ++ + V AGR+KK+A
Sbjct: 608 DMARTRLETACRKRKWPMPRFEVKGDGPSHAPTFTAVARLRAGGRDLVTPACAGRSKKEA 667
Query: 229 EMKAAKVAYTALIER 243
E AA+ A L+ER
Sbjct: 668 ERVAAR-AMLDLVER 681
>gi|383865158|ref|XP_003708042.1| PREDICTED: interferon-inducible double stranded RNA-dependent
protein kinase activator A-like [Megachile rotundata]
Length = 336
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 73/177 (41%), Gaps = 36/177 (20%)
Query: 1 MYKTKVQELCHQ--KRWSLPRYSTMKDGA-DHDPRFKSSVSVNGLSFHSSVSCKSSKESQ 57
M KT V L K+ ++P Y + DG H F V +GL+ ++ + +S K+++
Sbjct: 1 MNKTPVSILQEMMVKKHTVPNYELIHDGGGTHMNTFTYKVICDGLT--ATGTGRSKKDAK 58
Query: 58 NDAAKLAFLH-------------------FTSPPPP--------PPPNVQCRYKSVLQNY 90
++AAK A L +P PP PP LQ+
Sbjct: 59 HEAAK-AMLETIAAHRGYPQLPASPAQSPVRTPLPPQVPEVPRIPPTEPFVNAIGALQDL 117
Query: 91 ARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVAL 146
NL PLY I + GP HA F + + TF+ + K KQA+ AAK L
Sbjct: 118 CAENNLQEPLYVPISDVGPPHAKIFTIQCEVS--TFKEIGVAKTKKQAKQEAAKKML 172
>gi|355722281|gb|AES07527.1| staufen, RNA binding protein,-like protein 2 [Mustela putorius
furo]
Length = 390
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 114 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEIS 173
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 174 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 228
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 229 TTVLQELKKLPPLP 242
>gi|157074142|ref|NP_001096783.1| double-stranded RNA-binding protein Staufen homolog 2 [Bos taurus]
gi|426235644|ref|XP_004011790.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 2 [Ovis aries]
gi|151554636|gb|AAI49988.1| STAU2 protein [Bos taurus]
Length = 538
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 119 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSAQNCESGKEMDDDKDANKSEIS 178
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 179 LVFEIALKRNMPVS-FEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 233
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 234 TTVLQELKKLPPLP 247
>gi|305432452|ref|ZP_07401614.1| ribonuclease III [Campylobacter coli JV20]
gi|304444491|gb|EFM37142.1| ribonuclease III [Campylobacter coli JV20]
Length = 225
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKTK+QE+ K P+Y T++ G DH +F+ ++ +NG +++ + KE+Q A
Sbjct: 156 YKTKLQEITQAKLGQTPQYETVRAFGPDHLKQFEIALFLNGQELARAIAG-NKKEAQQMA 214
Query: 61 AKL 63
AK+
Sbjct: 215 AKI 217
>gi|57168805|ref|ZP_00367936.1| ribonuclease III Cj1635c [Campylobacter coli RM2228]
gi|419537870|ref|ZP_14077235.1| ribonuclease III [Campylobacter coli 90-3]
gi|419540283|ref|ZP_14079521.1| ribonuclease III [Campylobacter coli Z163]
gi|419544520|ref|ZP_14083476.1| ribonuclease III [Campylobacter coli 2553]
gi|419546878|ref|ZP_14085623.1| ribonuclease III [Campylobacter coli 2680]
gi|419549476|ref|ZP_14088066.1| ribonuclease III [Campylobacter coli 2685]
gi|419553184|ref|ZP_14091447.1| ribonuclease III [Campylobacter coli 2692]
gi|419555536|ref|ZP_14093549.1| ribonuclease III [Campylobacter coli 84-2]
gi|419557967|ref|ZP_14095857.1| ribonuclease III [Campylobacter coli 80352]
gi|419560500|ref|ZP_14098141.1| ribonuclease III [Campylobacter coli 86119]
gi|419562240|ref|ZP_14099759.1| ribonuclease III [Campylobacter coli 1091]
gi|419565239|ref|ZP_14102588.1| ribonuclease III [Campylobacter coli 1098]
gi|419566594|ref|ZP_14103848.1| ribonuclease III [Campylobacter coli 1148]
gi|419569978|ref|ZP_14107033.1| ribonuclease III [Campylobacter coli 7--1]
gi|419571931|ref|ZP_14108869.1| ribonuclease III [Campylobacter coli 132-6]
gi|419574263|ref|ZP_14111024.1| ribonuclease III [Campylobacter coli 1891]
gi|419575098|ref|ZP_14111795.1| ribonuclease III [Campylobacter coli 1909]
gi|419577226|ref|ZP_14113783.1| ribonuclease III [Campylobacter coli 59-2]
gi|419579706|ref|ZP_14116108.1| ribonuclease III [Campylobacter coli 1948]
gi|419581745|ref|ZP_14118035.1| ribonuclease III [Campylobacter coli 1957]
gi|419591030|ref|ZP_14126389.1| ribonuclease III [Campylobacter coli 37/05]
gi|419592712|ref|ZP_14127956.1| ribonuclease III [Campylobacter coli LMG 9854]
gi|419595070|ref|ZP_14130184.1| ribonuclease III [Campylobacter coli LMG 23336]
gi|419596512|ref|ZP_14131515.1| ribonuclease III [Campylobacter coli LMG 23341]
gi|419599217|ref|ZP_14134083.1| ribonuclease III [Campylobacter coli LMG 23342]
gi|419600989|ref|ZP_14135725.1| ribonuclease III [Campylobacter coli LMG 23344]
gi|419602764|ref|ZP_14137338.1| ribonuclease III [Campylobacter coli 151-9]
gi|419604007|ref|ZP_14138482.1| ribonuclease III [Campylobacter coli LMG 9853]
gi|419606995|ref|ZP_14141345.1| ribonuclease III [Campylobacter coli LMG 9860]
gi|419608702|ref|ZP_14142887.1| ribonuclease III [Campylobacter coli H6]
gi|419611039|ref|ZP_14145088.1| ribonuclease III [Campylobacter coli H8]
gi|419612541|ref|ZP_14146417.1| ribonuclease III [Campylobacter coli H9]
gi|419614811|ref|ZP_14148580.1| ribonuclease III [Campylobacter coli H56]
gi|419617063|ref|ZP_14150694.1| ribonuclease III [Campylobacter coli Z156]
gi|57019852|gb|EAL56535.1| ribonuclease III Cj1635c [Campylobacter coli RM2228]
gi|380517237|gb|EIA43356.1| ribonuclease III [Campylobacter coli Z163]
gi|380519417|gb|EIA45495.1| ribonuclease III [Campylobacter coli 90-3]
gi|380521629|gb|EIA47349.1| ribonuclease III [Campylobacter coli 2680]
gi|380525099|gb|EIA50654.1| ribonuclease III [Campylobacter coli 2553]
gi|380525687|gb|EIA51192.1| ribonuclease III [Campylobacter coli 2685]
gi|380529448|gb|EIA54604.1| ribonuclease III [Campylobacter coli 2692]
gi|380535994|gb|EIA60660.1| ribonuclease III [Campylobacter coli 84-2]
gi|380536990|gb|EIA61575.1| ribonuclease III [Campylobacter coli 86119]
gi|380540084|gb|EIA64409.1| ribonuclease III [Campylobacter coli 1098]
gi|380540610|gb|EIA64910.1| ribonuclease III [Campylobacter coli 80352]
gi|380541447|gb|EIA65709.1| ribonuclease III [Campylobacter coli 1091]
gi|380545945|gb|EIA69908.1| ribonuclease III [Campylobacter coli 1148]
gi|380548527|gb|EIA72429.1| ribonuclease III [Campylobacter coli 7--1]
gi|380549901|gb|EIA73629.1| ribonuclease III [Campylobacter coli 1891]
gi|380552684|gb|EIA76239.1| ribonuclease III [Campylobacter coli 132-6]
gi|380554296|gb|EIA77773.1| ribonuclease III [Campylobacter coli 1909]
gi|380556681|gb|EIA79925.1| ribonuclease III [Campylobacter coli 1948]
gi|380557699|gb|EIA80902.1| ribonuclease III [Campylobacter coli 59-2]
gi|380558478|gb|EIA81656.1| ribonuclease III [Campylobacter coli 1957]
gi|380569220|gb|EIA91667.1| ribonuclease III [Campylobacter coli 37/05]
gi|380571779|gb|EIA94137.1| ribonuclease III [Campylobacter coli LMG 9854]
gi|380574438|gb|EIA96541.1| ribonuclease III [Campylobacter coli LMG 23336]
gi|380575832|gb|EIA97900.1| ribonuclease III [Campylobacter coli LMG 23342]
gi|380575953|gb|EIA98015.1| ribonuclease III [Campylobacter coli LMG 23341]
gi|380580494|gb|EIB02242.1| ribonuclease III [Campylobacter coli 151-9]
gi|380580987|gb|EIB02719.1| ribonuclease III [Campylobacter coli LMG 9853]
gi|380582338|gb|EIB04002.1| ribonuclease III [Campylobacter coli LMG 23344]
gi|380585061|gb|EIB06434.1| ribonuclease III [Campylobacter coli H6]
gi|380586154|gb|EIB07466.1| ribonuclease III [Campylobacter coli LMG 9860]
gi|380588981|gb|EIB10066.1| ribonuclease III [Campylobacter coli H8]
gi|380590213|gb|EIB11238.1| ribonuclease III [Campylobacter coli H9]
gi|380592232|gb|EIB13144.1| ribonuclease III [Campylobacter coli H56]
gi|380594164|gb|EIB14970.1| ribonuclease III [Campylobacter coli Z156]
Length = 224
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKTK+QE+ K P+Y T++ G DH +F+ ++ +NG +++ + KE+Q A
Sbjct: 155 YKTKLQEITQAKLGQTPQYETVRAFGPDHLKQFEIALFLNGQELARAIAG-NKKEAQQMA 213
Query: 61 AKL 63
AK+
Sbjct: 214 AKI 216
>gi|426359914|ref|XP_004047201.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 2 [Gorilla gorilla gorilla]
Length = 538
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 119 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEIS 178
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 179 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 233
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 234 TTVLQELKKLPPLP 247
>gi|269958484|ref|YP_003328271.1| ribonuclease 3 [Anaplasma centrale str. Israel]
gi|269848313|gb|ACZ48957.1| ribonuclease 3 [Anaplasma centrale str. Israel]
Length = 249
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 3 KTKVQELCHQKRWSLPRYSTM-KDGADHDPRFKSSVSVNGLSFHSSV--SCKSSKESQND 59
KT +QE + W++P Y + K G +H P F VS+ G H S+ + S K ++ +
Sbjct: 167 KTALQEWVQSRGWTVPLYKLVSKSGPEHKPVFAVEVSIQG---HGSILGTGSSKKLAEQE 223
Query: 60 AAKLAFLHFTSPP 72
AAKL T P
Sbjct: 224 AAKLMLKRITELP 236
Score = 38.1 bits (87), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 176 KNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
K L E G VPLY+ + K G H P F V + G G +KK AE +AAK
Sbjct: 167 KTALQEWVQSRGWTVPLYKLVSKSGPEHKPVFAVEVSIQGHGSILGTGSSKKLAEQEAAK 226
Query: 235 VAYTALIERKLIFSLPFHG 253
+ K I LP +G
Sbjct: 227 LML------KRITELPQNG 239
>gi|410866684|ref|YP_006981295.1| Ribonuclease 3 [Propionibacterium acidipropionici ATCC 4875]
gi|410823325|gb|AFV89940.1| Ribonuclease 3 [Propionibacterium acidipropionici ATCC 4875]
Length = 259
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QE+C + +P Y G DH+ R+++ V+G + + V S KE++ AA
Sbjct: 183 WKTALQEMCAELGIEVPEYQVNGSGPDHNRRYEARAVVDGRARAACVG-HSKKEAEQGAA 241
Query: 62 KLAF 65
LA
Sbjct: 242 HLAV 245
Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 156 EAIFLYAHVSMYLWDD------GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISM 209
EA+ L H+ L D+ G +K L E+ G+ VP Y+ G H + +
Sbjct: 158 EALRLVHHLFDPLVDEAVRSGAGTDWKTALQEMCAELGIEVPEYQVNGSGPDHNRRYEAR 217
Query: 210 VEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER 243
VDG G +KK+AE AA +A L R
Sbjct: 218 AVVDGRARAACVGHSKKEAEQGAAHLAVEELSRR 251
>gi|419550405|ref|ZP_14088911.1| ribonuclease III [Campylobacter coli 2688]
gi|419553745|ref|ZP_14091902.1| ribonuclease III [Campylobacter coli 2698]
gi|380530677|gb|EIA55739.1| ribonuclease III [Campylobacter coli 2688]
gi|380533733|gb|EIA58640.1| ribonuclease III [Campylobacter coli 2698]
Length = 224
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKTK+QE+ K P+Y T++ G DH +F+ ++ +NG +++ + KE+Q A
Sbjct: 155 YKTKLQEITQAKLGQTPQYETVRAFGPDHLKQFEIALFLNGQELARAIAG-NKKEAQQMA 213
Query: 61 AKL 63
AK+
Sbjct: 214 AKI 216
>gi|119717505|ref|YP_924470.1| ribonuclease III [Nocardioides sp. JS614]
gi|119538166|gb|ABL82783.1| RNAse III [Nocardioides sp. JS614]
Length = 276
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKA-GRTKKKAEM 230
G+ +K L ELS GL VP Y G HM TF + V V GE YG GR+KK+AE
Sbjct: 187 GLDWKTSLQELSAEHGLGVPEYVIEDDGPDHMKTFTAQVRV-GEGLYGNGVGRSKKEAEQ 245
Query: 231 KAAKVAY 237
AA+ AY
Sbjct: 246 AAAETAY 252
>gi|334562985|ref|ZP_08515976.1| ribonuclease III [Corynebacterium bovis DSM 20582]
Length = 246
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 75 PPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNL 134
P + +K+VL ++L P+Y + EGPAH +F A VT+ S
Sbjct: 168 PSVGLTMDWKTVLLENLSGRHLGEPVYETAVEGPAHDQTFSATVTVGDRVMGSGTGHTK- 226
Query: 135 KQAEHAAAKVALFSL 149
K+AEH AA+ A+ S+
Sbjct: 227 KEAEHHAAREAVASI 241
>gi|294678827|ref|YP_003579442.1| ribonuclease III [Rhodobacter capsulatus SB 1003]
gi|294477647|gb|ADE87035.1| ribonuclease III [Rhodobacter capsulatus SB 1003]
Length = 228
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 55/117 (47%), Gaps = 21/117 (17%)
Query: 143 KVALFSLACDDFQEAIFLYAH------VSMYLW--------DDGVFYKNVLHELSLREGL 188
K AL A + A++L A + + LW +D K L E + GL
Sbjct: 112 KDALLGDAMEAVIAAVYLDAGFEVARALVLRLWAGRIQSVDNDARDPKTALQEWAQARGL 171
Query: 189 PVPLYETI-KCGAPHMPTF-ISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER 243
P P YET+ + G H P F I++V GE +AG +K+ AE AAK AL+ER
Sbjct: 172 PPPRYETLGREGPDHAPQFRIAVVLASGETEEAQAG-SKRNAEQAAAK----ALLER 223
Score = 38.1 bits (87), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 84 KSVLQNYARRKNLDSPLYSSI-REGPAHACSFK-ARVTIDGHTFESLEFFKNLKQAEHAA 141
K+ LQ +A+ + L P Y ++ REGP HA F+ A V G T E+ K + AE AA
Sbjct: 159 KTALQEWAQARGLPPPRYETLGREGPDHAPQFRIAVVLASGETEEAQAGSK--RNAEQAA 216
Query: 142 AKVALFSL 149
AK L L
Sbjct: 217 AKALLERL 224
>gi|197119571|ref|YP_002139998.1| ribonuclease III [Geobacter bemidjiensis Bem]
gi|197088931|gb|ACH40202.1| ribonuclease III [Geobacter bemidjiensis Bem]
Length = 232
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 3 KTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
KT++QE + LPRY + G DHD RF V + G ++ KE++ DAA
Sbjct: 163 KTELQETARLFKGELPRYQLKQVTGPDHDKRFTVEVYL-GEELMGEGVGRTKKEAEQDAA 221
Query: 62 KLAFL 66
+ AFL
Sbjct: 222 RAAFL 226
>gi|332670942|ref|YP_004453950.1| ribonuclease III [Cellulomonas fimi ATCC 484]
gi|332339980|gb|AEE46563.1| ribonuclease III [Cellulomonas fimi ATCC 484]
Length = 258
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 33/66 (50%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
+K L ELS GL P Y+ + G H TF + + GE +G KK AE AA+
Sbjct: 159 WKTSLQELSAALGLGAPSYDVVGEGPDHARTFTARAVIAGEPRGAGSGPAKKLAEQHAAE 218
Query: 235 VAYTAL 240
AY AL
Sbjct: 219 DAYRAL 224
>gi|114620490|ref|XP_519808.2| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 12 [Pan troglodytes]
gi|410298478|gb|JAA27839.1| staufen, RNA binding protein, homolog 2 [Pan troglodytes]
gi|410349503|gb|JAA41355.1| staufen, RNA binding protein, homolog 2 [Pan troglodytes]
Length = 538
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 119 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEIS 178
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 179 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 233
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 234 TTVLQELKKLPPLP 247
>gi|422416325|ref|ZP_16493282.1| ribonuclease III [Listeria innocua FSL J1-023]
gi|313623280|gb|EFR93523.1| ribonuclease III [Listeria innocua FSL J1-023]
Length = 229
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 173 VFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V YK L E+ R+ + Y+ + + G H +F + V V+G+V +GRTKK+AE
Sbjct: 158 VDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKSFDAQVIVNGQVLGKGSGRTKKQAEQS 217
Query: 232 AAKVAYTALIER 243
AA+ A L R
Sbjct: 218 AAQFAINQLTHR 229
>gi|312074021|ref|XP_003139783.1| hypothetical protein LOAG_04198 [Loa loa]
Length = 184
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 6 VQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAF 65
+ ELC +KRW P+++ ++ G ++ RF VNG+ + S S K + A ++
Sbjct: 98 LMELCSKKRWHAPQFTCLESGPSNNRRFLWKAVVNGVEYQPSTPSTSKKTGKAQACQVVL 157
Query: 66 LHFTSPPPPP 75
P P
Sbjct: 158 QSLGLVPRDP 167
>gi|224046380|ref|XP_002199282.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 1 [Taeniopygia guttata]
gi|449494254|ref|XP_004175288.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 2 [Taeniopygia guttata]
Length = 680
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 12/135 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + +D K+
Sbjct: 223 TVGNSEFFGEGKTRQAARHNAAMKALQALQNEPIPEKLPQNGETGKESEEDKDANKSEIS 282
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
V+ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 283 VVFEIALKRNIPV-TFEVIKESGPPHMKSFVTRVTV-GEFTAEGEGNSKKLSKKRA---A 337
Query: 237 YTALIERKLIFSLPF 251
L E K + LP
Sbjct: 338 MAVLQELKKLPPLPV 352
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 94/240 (39%), Gaps = 36/240 (15%)
Query: 38 SVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPPPPPPPNVQCRYKS--VLQNYARRKN 95
S+NG S+ SC S S D L SP P + K+ L N R N
Sbjct: 37 SMNGSISESAASCSSPTASLVDPTSL----INSPAPLQDNMANPKEKTPMCLVNELARFN 92
Query: 96 LDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDF 154
P Y + E GPAHA F ++T+ T+E+ ++K+A+HAAA AL
Sbjct: 93 RIQPQYKLLNERGPAHAKMFTVQLTLGEQTWEA--EGSSIKKAQHAAASKALNETT---L 147
Query: 155 QEAIFLYAHVSMYLWDDGVFYKNVLHELSLREG----------LPVPLY----------- 193
+ ++ + L+ L+++ G P+P Y
Sbjct: 148 PKPTPRPPKNNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPIPNYRANYNFRGMYN 207
Query: 194 ETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLPFHG 253
+ C P + F + V F+G+ G+T++ A AA A AL + LP +G
Sbjct: 208 QRYHCPVPKV--FYVQLTVGNSEFFGE-GKTRQAARHNAAMKALQALQNEPIPEKLPQNG 264
>gi|403718446|ref|ZP_10943322.1| ribonuclease III [Kineosphaera limosa NBRC 100340]
gi|403208467|dbj|GAB98005.1| ribonuclease III [Kineosphaera limosa NBRC 100340]
Length = 267
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ P Y + G H F + V + EV GR+KK+AE K
Sbjct: 170 GLDWKTSLQELAASGSFGSPEYRVSEEGPDHEKVFTAHVVISEEVLGDGNGRSKKEAEQK 229
Query: 232 AAKVAYTALIER 243
AA+ A+ L R
Sbjct: 230 AAEQAWKELTRR 241
>gi|317495799|ref|ZP_07954162.1| ribonuclease III [Gemella morbillorum M424]
gi|316913976|gb|EFV35459.1| ribonuclease III [Gemella morbillorum M424]
Length = 237
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 160 LYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFY 218
L+ V Y + V YK +L E + L Y+ + P H TFIS VE+DG+ +
Sbjct: 151 LFTEVEDYEYSSFVDYKTILQEYVFKIKLGEIEYKVLDSIGPSHSKTFISAVEIDGKQYG 210
Query: 219 GKAGRTKKKAEMKAAKVAYTAL 240
TKK++E +AK A L
Sbjct: 211 SGTAATKKESEQLSAKQALDKL 232
>gi|397522631|ref|XP_003831363.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 2 [Pan paniscus]
gi|23507041|gb|AAN37927.1|AF459098_1 double-stranded RNA-binding protein Staufen2 short isoform [Homo
sapiens]
gi|14249967|gb|AAH08369.1| STAU2 protein [Homo sapiens]
gi|119607411|gb|EAW87005.1| staufen, RNA binding protein, homolog 2 (Drosophila), isoform CRA_c
[Homo sapiens]
gi|123999574|gb|ABM87331.1| staufen, RNA binding protein, homolog 2 (Drosophila) [synthetic
construct]
gi|157929178|gb|ABW03874.1| staufen, RNA binding protein, homolog 2 (Drosophila) [synthetic
construct]
Length = 538
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 119 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEIS 178
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 179 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 233
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 234 TTVLQELKKLPPLP 247
>gi|410210864|gb|JAA02651.1| staufen, RNA binding protein, homolog 2 [Pan troglodytes]
Length = 538
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 119 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEIS 178
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 179 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 233
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 234 TTVLQELKKLPPLP 247
>gi|410987301|ref|XP_003999943.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 2 [Felis catus]
Length = 504
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 47 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEIS 106
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 107 LVFEIALKRNMPVS-FEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 161
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 162 TTVLQELKKLPPLP 175
>gi|345793129|ref|XP_003433715.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
[Canis lupus familiaris]
Length = 504
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 47 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEIS 106
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 107 LVFEIALKRNMPVS-FEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 161
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 162 TTVLQELKKLPPLP 175
>gi|384946452|gb|AFI36831.1| double-stranded RNA-binding protein Staufen homolog 2 isoform b
[Macaca mulatta]
gi|387541624|gb|AFJ71439.1| double-stranded RNA-binding protein Staufen homolog 2 isoform b
[Macaca mulatta]
Length = 538
Score = 41.6 bits (96), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 119 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQSGESGKDMDDDKDANKSEIS 178
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 179 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 233
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 234 TTVLQELKKLPPLP 247
>gi|363729628|ref|XP_418563.3| PREDICTED: double-stranded RNA-specific editase B2 [Gallus gallus]
Length = 792
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 176 KNVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L L+ GL + + G H P F VEV+G F G G TKKKA+M+AA+
Sbjct: 127 KNALVQLHELKPGLQYKMVS--QTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAAE 183
Query: 235 VAYTALIE 242
+A + ++
Sbjct: 184 LALKSFVQ 191
>gi|254418789|ref|ZP_05032513.1| ribonuclease III [Brevundimonas sp. BAL3]
gi|196184966|gb|EDX79942.1| ribonuclease III [Brevundimonas sp. BAL3]
Length = 236
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 176 KNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
K+ L E + +G P+P Y + G+ H PTF V V+G GR++++AE K
Sbjct: 168 KSALQEWAQAKGRPLPTYRVADRTGSDHAPTFTIEVSVEGVEPLTAQGRSRQEAE----K 223
Query: 235 VAYTALIERKLIF 247
A TAL++R+ +
Sbjct: 224 AAATALLKREGVI 236
>gi|15964825|ref|NP_385178.1| ribonuclease III [Sinorhizobium meliloti 1021]
gi|334315616|ref|YP_004548235.1| ribonuclease 3 [Sinorhizobium meliloti AK83]
gi|384528784|ref|YP_005712872.1| ribonuclease 3 [Sinorhizobium meliloti BL225C]
gi|384535189|ref|YP_005719274.1| ribonuclease III [Sinorhizobium meliloti SM11]
gi|22654067|sp|Q92R47.1|RNC_RHIME RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|15074004|emb|CAC45651.1| Probable ribonuclease III [Sinorhizobium meliloti 1021]
gi|333810960|gb|AEG03629.1| Ribonuclease 3 [Sinorhizobium meliloti BL225C]
gi|334094610|gb|AEG52621.1| Ribonuclease 3 [Sinorhizobium meliloti AK83]
gi|336032081|gb|AEH78013.1| ribonuclease III [Sinorhizobium meliloti SM11]
Length = 238
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 3 KTKVQELCHQKRWSLPRYSTM-KDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
KT++QE H K P+Y T + G DHDPRF +V V+G++ + V Q A
Sbjct: 163 KTELQEWAHAKFGVAPKYRTDDRSGPDHDPRFTVTVEVDGIAPETGVDRSKRGAEQVAAM 222
Query: 62 KL 63
KL
Sbjct: 223 KL 224
>gi|317129239|ref|YP_004095521.1| ribonuclease III [Bacillus cellulosilyticus DSM 2522]
gi|315474187|gb|ADU30790.1| ribonuclease III [Bacillus cellulosilyticus DSM 2522]
Length = 253
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 148 SLACDDFQEAIFLYAHVSMY-LWDDGVF-----YKNVLHELSLREGLPVPLYETIKCGAP 201
+L D +A++ + V++Y DG F YK+ L EL REG Y+ ++ P
Sbjct: 152 ALYLDLGMDAVYDFLKVNVYPKIADGAFSDMMDYKSQLQELVQREGQGQIQYKIVQERGP 211
Query: 202 -HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
H F+S V ++ ++ AGR+KK+AE AA+ A
Sbjct: 212 AHAREFVSEVWLENKLLGIGAGRSKKEAEQMAAQKA 247
>gi|407720016|ref|YP_006839678.1| ribonuclease III [Sinorhizobium meliloti Rm41]
gi|418400035|ref|ZP_12973579.1| ribonuclease III [Sinorhizobium meliloti CCNWSX0020]
gi|433612842|ref|YP_007189640.1| ribonuclease III, bacterial [Sinorhizobium meliloti GR4]
gi|359505933|gb|EHK78451.1| ribonuclease III [Sinorhizobium meliloti CCNWSX0020]
gi|407318248|emb|CCM66852.1| ribonuclease III [Sinorhizobium meliloti Rm41]
gi|429551032|gb|AGA06041.1| ribonuclease III, bacterial [Sinorhizobium meliloti GR4]
Length = 238
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 3 KTKVQELCHQKRWSLPRYSTM-KDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
KT++QE H K P+Y T + G DHDPRF +V V+G++ + V Q A
Sbjct: 163 KTELQEWAHAKFGVAPKYRTDDRSGPDHDPRFTVTVEVDGIAPETGVDRSKRGAEQVAAM 222
Query: 62 KL 63
KL
Sbjct: 223 KL 224
>gi|326921558|ref|XP_003207024.1| PREDICTED: double-stranded RNA-specific editase B2-like [Meleagris
gallopavo]
Length = 720
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 176 KNVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L L+ GL + + G H P F VEV+G F G G TKKKA+M+AA+
Sbjct: 102 KNALVQLHELKPGLQYKMVS--QTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAAE 158
Query: 235 VAYTALIE 242
+A + ++
Sbjct: 159 LALKSFVQ 166
>gi|432097000|gb|ELK27499.1| Double-stranded RNA-binding protein Staufen like protein 2 [Myotis
davidii]
Length = 635
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 129 EFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN---VLHEL 182
EFF K + A H AA AL +L + E + DD K+ ++ E+
Sbjct: 280 EFFGEGKTRQAARHNAAMKALQALQNEPIPEKSSQNGESGKEMDDDKDANKSEISLVFEI 339
Query: 183 SLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALI 241
+L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +AA T L
Sbjct: 340 ALKRNMPVS-FEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRAAT---TVLQ 394
Query: 242 ERKLIFSLP 250
E K + LP
Sbjct: 395 ELKKLPPLP 403
>gi|409400301|ref|ZP_11250411.1| ribonuclease III [Acidocella sp. MX-AZ02]
gi|409130686|gb|EKN00433.1| ribonuclease III [Acidocella sp. MX-AZ02]
Length = 223
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 176 KNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
K L E +L+ G +PLYET++ P H P F+ V V E +AG K+ AE +AA+
Sbjct: 157 KTALQEWALKRGQILPLYETLEQSGPSHAPLFVVRVSVGVESATAQAG-AKRAAEQEAAR 215
Query: 235 V 235
+
Sbjct: 216 L 216
>gi|403304160|ref|XP_003942677.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 1 [Saimiri boliviensis boliviensis]
Length = 479
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 119 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKDMDDDKDANKSEIS 178
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 179 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 233
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 234 TTVLQELKKLPPLP 247
>gi|374815505|ref|ZP_09719242.1| ribonuclease III [Treponema primitia ZAS-1]
Length = 232
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISM-VEVDGEVFYGKAGRTKKKAEMKAA 233
YK++L ELS P Y +K P F + V VD + F G+ KK AE +AA
Sbjct: 156 YKSLLQELSQHLYRKYPAYRLLKRSGPEHDRFFWIEVTVDDKTFGPGMGKNKKTAEQEAA 215
Query: 234 KVAYTAL 240
++AY AL
Sbjct: 216 RIAYDAL 222
>gi|431893769|gb|ELK03587.1| Double-stranded RNA-specific editase 1 [Pteropus alecto]
Length = 531
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 184 LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE 242
+R GL L + G H P F+ VEV+G+ F G AG TKKKA++ AA+ A + ++
Sbjct: 6 IRPGLQYALLS--QTGPVHAPLFVVAVEVNGQAFEG-AGPTKKKAKLHAAEKALRSFVQ 61
>gi|397522633|ref|XP_003831364.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 3 [Pan paniscus]
gi|221039638|dbj|BAH11582.1| unnamed protein product [Homo sapiens]
Length = 390
Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 131 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEIS 190
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 191 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 245
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 246 TTVLQELKKLPPLP 259
>gi|383753564|ref|YP_005432467.1| putative ribonuclease 3 [Selenomonas ruminantium subsp. lactilytica
TAM6421]
gi|381365616|dbj|BAL82444.1| putative ribonuclease 3 [Selenomonas ruminantium subsp. lactilytica
TAM6421]
Length = 240
Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK +L E+ +E YE + P H TF V + G+V GR+KK+AE +AA
Sbjct: 170 YKTILQEVVYQEAQQTVSYELVSTSGPDHDKTFTFNVCITGKVMGTGTGRSKKEAEQRAA 229
Query: 234 KVAYTAL 240
K A L
Sbjct: 230 KEALVKL 236
>gi|197101215|ref|NP_001124896.1| double-stranded RNA-binding protein Staufen homolog 2 [Pongo
abelii]
gi|55726277|emb|CAH89910.1| hypothetical protein [Pongo abelii]
Length = 491
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 131 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEIS 190
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 191 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 245
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 246 TTVLQELKKLPPLP 259
>gi|443289363|ref|ZP_21028457.1| Ribonuclease III [Micromonospora lupini str. Lupac 08]
gi|385887516|emb|CCH16531.1| Ribonuclease III [Micromonospora lupini str. Lupac 08]
Length = 328
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
+K L EL+ GL VP Y G H+ TF + V V G + G GR+KK+AE +AA+
Sbjct: 168 WKTSLQELTAALGLGVPEYRIEGTGPDHLKTFTAWVVVAGNRYGGAEGRSKKEAEQRAAE 227
Query: 235 VAYTALIER 243
A+ L E+
Sbjct: 228 AAWRMLTEQ 236
>gi|338728179|ref|XP_003365631.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 4 [Equus caballus]
Length = 503
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 47 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEIS 106
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 107 LVFEIALKRNMPVS-FEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 161
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 162 TTVLQELKKLPPLP 175
>gi|326917772|ref|XP_003205170.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog
2-like, partial [Meleagris gallopavo]
Length = 479
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + +D K+
Sbjct: 223 TVGNSEFFGEGKTRQAARHNAAMKALQALQNEPIPEKLPQNGETGKETEEDKDANKSEIS 282
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
V+ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 283 VVFEIALKRNIPV-SFEVIKESGPPHMKSFVTRVTV-GEFTAEGEGNSKKLSKKRA---A 337
Query: 237 YTALIERKLIFSLP 250
+ L E K + LP
Sbjct: 338 MSVLQELKKLPPLP 351
>gi|395539825|ref|XP_003771866.1| PREDICTED: double-stranded RNA-specific editase B2, partial
[Sarcophilus harrisii]
Length = 718
Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 176 KNVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L L+ GL + + G H P F VEV+G F G G TKKKA+M+AA+
Sbjct: 101 KNALVQLHELKPGLQYKMVS--QTGPVHAPVFAVAVEVNGFTFEG-TGPTKKKAKMRAAE 157
Query: 235 VAYTALIE 242
+A + ++
Sbjct: 158 LALKSFVQ 165
>gi|410210862|gb|JAA02650.1| staufen, RNA binding protein, homolog 2 [Pan troglodytes]
Length = 479
Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 119 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEIS 178
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 179 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 233
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 234 TTVLQELKKLPPLP 247
>gi|405983301|ref|ZP_11041611.1| ribonuclease III [Slackia piriformis YIT 12062]
gi|404389309|gb|EJZ84386.1| ribonuclease III [Slackia piriformis YIT 12062]
Length = 258
Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 176 KNVLHELSLREGLPVPLYETIKC-GAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
K+ L E EG+ P Y+ ++ G PH TF+S V + GRTKK+AE +AAK
Sbjct: 166 KSALQEKLQEEGI-TPTYKLVETQGPPHDRTFVSQVFAGMKALASGMGRTKKEAESQAAK 224
Query: 235 VAYTAL 240
A AL
Sbjct: 225 TALDAL 230
>gi|307167407|gb|EFN60992.1| Interferon-inducible double stranded RNA-dependent protein kinase
activator A-like protein [Camponotus floridanus]
Length = 341
Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 178 VLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
+L E+ +++G+ VP YE I G H+ TF V DG G +GR KK+A+ +AAK
Sbjct: 8 ILQEMMVKQGM-VPDYELIHNGGGRHVNTFTYRVICDGLTAIG-SGRCKKEAKHEAAKAM 65
Query: 237 YTALIERKLIFSLP 250
T +I+ + LP
Sbjct: 66 LTEIIKHRNYPQLP 79
>gi|213964554|ref|ZP_03392754.1| ribonuclease III [Corynebacterium amycolatum SK46]
gi|213952747|gb|EEB64129.1| ribonuclease III [Corynebacterium amycolatum SK46]
Length = 242
Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 34/69 (49%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G +K +L E + LP Y G H TF V VDG V G TKK+AEM
Sbjct: 173 GRDWKTLLQERLAAKQLPAAEYTVRTTGPDHDLTFYVDVLVDGVVKGSGTGATKKEAEMH 232
Query: 232 AAKVAYTAL 240
AA A+TAL
Sbjct: 233 AAHQAHTAL 241
>gi|384946456|gb|AFI36833.1| double-stranded RNA-binding protein Staufen homolog 2 isoform f
[Macaca mulatta]
Length = 473
Score = 41.2 bits (95), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 113 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQSGESGKDMDDDKDANKSEIS 172
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 173 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 227
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 228 TTVLQELKKLPPLP 241
>gi|221040030|dbj|BAH11778.1| unnamed protein product [Homo sapiens]
Length = 473
Score = 41.2 bits (95), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 113 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEIS 172
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 173 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 227
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 228 TTVLQELKKLPPLP 241
>gi|261199119|ref|XP_002625961.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
gi|239595113|gb|EEQ77694.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
Length = 405
Score = 41.2 bits (95), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 72 PPPPPPNVQCR---YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHT-FES 127
P P P V + ++LQ Y ++ LD P+Y+ AH F+ V + G + F +
Sbjct: 43 PELPGPKVTLGVWIWTALLQEYCQQNKLDRPIYTKY----AHEEGFRYEVEVGGVSCFGA 98
Query: 128 LEFFKNLKQAEHAAAKVALFSL 149
+F+K +A HA+A AL+ L
Sbjct: 99 NKFYKTATEAIHASAHAALYCL 120
>gi|224044691|ref|XP_002193461.1| PREDICTED: double-stranded RNA-specific editase B2 [Taeniopygia
guttata]
Length = 744
Score = 41.2 bits (95), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 176 KNVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L L+ GL + + G H P F VEV+G F G G TKKKA+M+AA+
Sbjct: 127 KNALVQLHELKPGLQYKMVS--QTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAAE 183
Query: 235 VAYTALIE 242
+A + ++
Sbjct: 184 LALKSFVQ 191
>gi|207080126|ref|NP_001128815.1| DKFZP469K0112 protein [Pongo abelii]
gi|55729500|emb|CAH91481.1| hypothetical protein [Pongo abelii]
Length = 479
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 119 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEIS 178
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 179 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 233
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 234 TTVLQELKKLPPLP 247
>gi|344273171|ref|XP_003408397.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 2 [Loxodonta africana]
Length = 504
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 47 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEIS 106
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 107 LVFEIALKRNMPVS-FEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 161
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 162 TTVLQELKKLPPLP 175
>gi|378825353|ref|YP_005188085.1| ribonuclease III [Sinorhizobium fredii HH103]
gi|365178405|emb|CCE95260.1| ribonuclease III [Sinorhizobium fredii HH103]
Length = 239
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 3 KTKVQELCHQKRWSLPRYSTM-KDGADHDPRFKSSVSVNGLS 43
KT++QE H K PRY T + G DHDPRF +V V+G++
Sbjct: 164 KTELQEWAHAKFGVAPRYRTDDRSGPDHDPRFTVTVEVDGIA 205
>gi|344277900|ref|XP_003410735.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
editase B2-like [Loxodonta africana]
Length = 757
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 176 KNVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L L+ GL + + G H P F VEV+G F G G TKKKA+M+AA+
Sbjct: 139 KNALVQLHELKPGLQYKMVS--QTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAAE 195
Query: 235 VAYTALIE 242
+A + ++
Sbjct: 196 LALKSFVQ 203
>gi|334348787|ref|XP_001373773.2| PREDICTED: double-stranded RNA-specific editase B2-like
[Monodelphis domestica]
Length = 715
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 176 KNVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L L+ GL + + G H P F VEV+G F G G TKKKA+M+AA+
Sbjct: 97 KNALVQLHELKPGLQYKMVS--QTGPVHAPVFAVAVEVNGFTFEG-TGPTKKKAKMRAAE 153
Query: 235 VAYTALIE 242
+A + ++
Sbjct: 154 LALKSFVQ 161
>gi|114620506|ref|XP_001165637.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 8 [Pan troglodytes]
gi|410260222|gb|JAA18077.1| staufen, RNA binding protein, homolog 2 [Pan troglodytes]
gi|410298476|gb|JAA27838.1| staufen, RNA binding protein, homolog 2 [Pan troglodytes]
gi|410349501|gb|JAA41354.1| staufen, RNA binding protein, homolog 2 [Pan troglodytes]
Length = 479
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 119 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEIS 178
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 179 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 233
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 234 TTVLQELKKLPPLP 247
>gi|349700038|ref|ZP_08901667.1| ribonuclease III [Gluconacetobacter europaeus LMG 18494]
Length = 258
Score = 41.2 bits (95), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 58/151 (38%), Gaps = 31/151 (20%)
Query: 107 GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA-AKVALFSLACDDFQEAIFLYAHVS 165
GP HA T+ + + L AEH A A V + D EAI +
Sbjct: 91 GPRHAHLVSR--TVLAQVAQVMGLQSALDVAEHEARAGVRQMANVLADAVEAIL----GA 144
Query: 166 MYL--------------WDDGVFY--------KNVLHELSLREGLPVPLYETIKCGAP-H 202
MYL W++ + K L E L GLP+P Y + P H
Sbjct: 145 MYLDGGLAPARAFVRRMWNESIVAQARPPKDPKTALQEWVLGRGLPLPQYRVVSADGPSH 204
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
P F+ V+ G+ G AG +K+ AE AA
Sbjct: 205 APRFVIAVDAQGKTGQGIAG-SKRAAESDAA 234
>gi|158261305|dbj|BAF82830.1| unnamed protein product [Homo sapiens]
Length = 479
Score = 41.2 bits (95), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 119 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEIS 178
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 179 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 233
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 234 TTVLQELKKLPPLP 247
>gi|163119429|ref|YP_078987.2| ribonuclease III [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|319646025|ref|ZP_08000255.1| ribonuclease 3 [Bacillus sp. BT1B_CT2]
gi|404489084|ref|YP_006713190.1| ribonuclease III [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|81385589|sp|Q65JQ5.1|RNC_BACLD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|52348075|gb|AAU40709.1| ribonuclease III [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|145902936|gb|AAU23349.2| ribonuclease III [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|317391775|gb|EFV72572.1| ribonuclease 3 [Bacillus sp. BT1B_CT2]
Length = 249
Score = 41.2 bits (95), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
Query: 148 SLACDDFQEAI--FLYAHVSMYLWDDGVF-----YKNVLHELSLREGLPVPLYETIKCGA 200
+L D EA+ FL A+V + DDG F +K+ L E R+G + Y+ ++
Sbjct: 143 ALYLDQGLEAVVTFLKAYVFPKI-DDGAFSHVMDFKSQLQEFVQRDGRGILEYKILQEKG 201
Query: 201 P-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P H F + V + GEV +GR+KK+AE AA+ A L
Sbjct: 202 PAHNREFEANVSLKGEVLGVGSGRSKKEAEQHAAQEALAKL 242
>gi|397522629|ref|XP_003831362.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 1 [Pan paniscus]
gi|426359912|ref|XP_004047200.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 1 [Gorilla gorilla gorilla]
gi|6634457|emb|CAB64341.1| 39k3 protein [Homo sapiens]
gi|83404956|gb|AAI10448.1| Staufen, RNA binding protein, homolog 2 (Drosophila) [Homo sapiens]
gi|119607412|gb|EAW87006.1| staufen, RNA binding protein, homolog 2 (Drosophila), isoform CRA_d
[Homo sapiens]
gi|189054410|dbj|BAG37183.1| unnamed protein product [Homo sapiens]
Length = 479
Score = 41.2 bits (95), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 119 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEIS 178
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 179 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 233
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 234 TTVLQELKKLPPLP 247
>gi|57506125|ref|ZP_00372047.1| ribonuclease III (rnc) [Campylobacter upsaliensis RM3195]
gi|57015609|gb|EAL52401.1| ribonuclease III (rnc) [Campylobacter upsaliensis RM3195]
Length = 224
Score = 41.2 bits (95), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKTK+QE+ K P Y T + G DH F+ ++++ G +++ S KE+Q A
Sbjct: 155 YKTKLQEITQAKMGLTPEYETQRAFGPDHQKSFEIALNLEGKEMARAIAS-SKKEAQQMA 213
Query: 61 AKL 63
AKL
Sbjct: 214 AKL 216
>gi|296226704|ref|XP_002759045.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 2 [Callithrix jacchus]
Length = 538
Score = 41.2 bits (95), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 119 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKDMDDDKDANKSEIS 178
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 179 LVFEIALKRNMPVS-FEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 233
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 234 TTVLQELKKLPPLP 247
>gi|427412473|ref|ZP_18902665.1| ribonuclease III [Veillonella ratti ACS-216-V-Col6b]
gi|425716280|gb|EKU79264.1| ribonuclease III [Veillonella ratti ACS-216-V-Col6b]
Length = 253
Score = 41.2 bits (95), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 157 AIFLYAHVSMYL--WDDGVF---YKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMV 210
A F+ +H+ YL DG YK +L E +EG +Y + + G H F V
Sbjct: 153 AQFVLSHLQGYLEKAKDGKLGKDYKTMLQEYVQQEGEKQIVYTLLSESGPDHDKIFCMEV 212
Query: 211 EVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERK 244
++G+ + G++KK+AE AA+V LI ++
Sbjct: 213 RIEGKAYGSGTGKSKKEAEQNAAQVTLDYLIGKR 246
>gi|296480591|tpg|DAA22706.1| TPA: staufen homolog 2 [Bos taurus]
Length = 384
Score = 41.2 bits (95), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 119 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSAQNCESGKEMDDDKDANKSEIS 178
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 179 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 233
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 234 TTVLQELKKLPPLP 247
>gi|380783239|gb|AFE63495.1| double-stranded RNA-binding protein Staufen homolog 2 isoform e
[Macaca mulatta]
gi|383408739|gb|AFH27583.1| double-stranded RNA-binding protein Staufen homolog 2 isoform e
[Macaca mulatta]
gi|384946454|gb|AFI36832.1| double-stranded RNA-binding protein Staufen homolog 2 isoform e
[Macaca mulatta]
Length = 479
Score = 41.2 bits (95), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 119 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQSGESGKDMDDDKDANKSEIS 178
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 179 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 233
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 234 TTVLQELKKLPPLP 247
>gi|359687900|ref|ZP_09257901.1| ribonuclease III [Leptospira licerasiae serovar Varillal str.
MMD0835]
gi|418751524|ref|ZP_13307810.1| ribonuclease III [Leptospira licerasiae str. MMD4847]
gi|418758724|ref|ZP_13314906.1| ribonuclease III [Leptospira licerasiae serovar Varillal str. VAR
010]
gi|384114626|gb|EIE00889.1| ribonuclease III [Leptospira licerasiae serovar Varillal str. VAR
010]
gi|404274127|gb|EJZ41447.1| ribonuclease III [Leptospira licerasiae str. MMD4847]
Length = 268
Score = 41.2 bits (95), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YK+ +QE+C +K LP Y +K+ G DH+ F SVS+ F + K+ K ++ DA
Sbjct: 198 YKSVLQEICQKKFKLLPSYRLLKEVGPDHEKTFYVSVSIRD-KFSAEGKGKNKKFAEQDA 256
Query: 61 AK 62
AK
Sbjct: 257 AK 258
>gi|426359918|ref|XP_004047203.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 4 [Gorilla gorilla gorilla]
Length = 504
Score = 41.2 bits (95), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 47 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEIS 106
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 107 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 161
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 162 TTVLQELKKLPPLP 175
>gi|406913885|gb|EKD53182.1| hypothetical protein ACD_61C00122G0015 [uncultured bacterium]
Length = 234
Score = 41.2 bits (95), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 176 KNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
K++L E G P+Y+TI + G H TF V ++G+ G+ K++AE KAA+
Sbjct: 162 KSLLQEKVQSAGQSSPIYQTIGESGLDHNKTFEVAVSIEGKQLASGTGKNKQEAEQKAAQ 221
Query: 235 VAYTAL 240
A AL
Sbjct: 222 KALDAL 227
>gi|308485252|ref|XP_003104825.1| hypothetical protein CRE_23981 [Caenorhabditis remanei]
gi|308257523|gb|EFP01476.1| hypothetical protein CRE_23981 [Caenorhabditis remanei]
Length = 793
Score = 41.2 bits (95), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 6 VQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQ 57
+ ELC ++RW+ P +S + GADH F +V++N + + K KE +
Sbjct: 718 IMELCAKRRWNAPSFSCEESGADHMKMFIWTVAINNVEYRPMCGSKQKKEGK 769
>gi|56419727|ref|YP_147045.1| ribonuclease III [Geobacillus kaustophilus HTA426]
gi|81347639|sp|Q5L0Q3.1|RNC_GEOKA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|56379569|dbj|BAD75477.1| dsRNA-specific ribonuclease [Geobacillus kaustophilus HTA426]
Length = 246
Score = 40.8 bits (94), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Query: 148 SLACDDFQEAIFLYAHVSMY-LWDDGVF-----YKNVLHELSLREGLPVPLYETIKCGAP 201
+L D +A+ + +M+ D+G F +K+ L EL R+G Y ++ P
Sbjct: 141 ALYLDQGMDAVIRFLEKTMFPKIDEGAFSHVMDFKSQLQELVQRDGSGTLEYAILEEKGP 200
Query: 202 -HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
H F++ V ++G+ GR+KK+AE AA++A L
Sbjct: 201 AHNKEFVARVALNGQELGIGVGRSKKEAEQHAAQMALETL 240
>gi|423682137|ref|ZP_17656976.1| ribonuclease III [Bacillus licheniformis WX-02]
gi|383438911|gb|EID46686.1| ribonuclease III [Bacillus licheniformis WX-02]
Length = 253
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
Query: 148 SLACDDFQEAI--FLYAHVSMYLWDDGVF-----YKNVLHELSLREGLPVPLYETIKCGA 200
+L D EA+ FL A+V + DDG F +K+ L E R+G + Y+ ++
Sbjct: 147 ALYLDQGLEAVVTFLKAYVFPKI-DDGAFSHVMDFKSQLQEFVQRDGRGILEYKILQEKG 205
Query: 201 P-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P H F + V + GEV +GR+KK+AE AA+ A L
Sbjct: 206 PAHNREFEANVSLKGEVLGVGSGRSKKEAEQHAAQEALAKL 246
>gi|313673188|ref|YP_004051299.1| rnase iii [Calditerrivibrio nitroreducens DSM 19672]
gi|312939944|gb|ADR19136.1| RNAse III [Calditerrivibrio nitroreducens DSM 19672]
Length = 229
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YK+++Q+L + SLP Y + G +HD F + +N ++ S S KS K+++ DA
Sbjct: 158 YKSELQKLTQKIFESLPDYKVKDETGPEHDKTFIVDLYIND-RYYCSGSGKSKKKAEQDA 216
Query: 61 AKLAFLHFT 69
AK AFL +
Sbjct: 217 AKKAFLMLS 225
>gi|289435148|ref|YP_003465020.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|422419421|ref|ZP_16496376.1| ribonuclease III [Listeria seeligeri FSL N1-067]
gi|422422509|ref|ZP_16499462.1| ribonuclease III [Listeria seeligeri FSL S4-171]
gi|289171392|emb|CBH27936.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|313632767|gb|EFR99733.1| ribonuclease III [Listeria seeligeri FSL N1-067]
gi|313637349|gb|EFS02832.1| ribonuclease III [Listeria seeligeri FSL S4-171]
Length = 230
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 173 VFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V YK L E+ R+ + Y+ + + G H F + V V+G+V +GRTKK+AE
Sbjct: 158 VDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQS 217
Query: 232 AAKVAYTALIERK 244
AA+ A L R+
Sbjct: 218 AAQFAINQLTHRQ 230
>gi|332826413|ref|XP_003311807.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
[Pan troglodytes]
gi|397522637|ref|XP_003831366.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 5 [Pan paniscus]
gi|221044446|dbj|BAH13900.1| unnamed protein product [Homo sapiens]
Length = 504
Score = 40.8 bits (94), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 47 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEIS 106
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 107 LVFEIALKRNMPVS-FEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 161
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 162 TTVLQELKKLPPLP 175
>gi|310689632|pdb|2L3C|A Chain A, Solution Structure Of Adar2 Dsrbm1 Bound To Lsl Rna
Length = 74
Score = 40.8 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 4 VLPKNALMQLNEIKPGLQYMLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 60
Query: 232 AAKVAYTALIE 242
AA+ A + ++
Sbjct: 61 AAEKALRSFVQ 71
>gi|256418997|ref|NP_001157853.1| double-stranded RNA-binding protein Staufen homolog 2 isoform b
[Homo sapiens]
Length = 538
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 119 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDVDDDKDANKSEIS 178
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 179 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 233
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 234 TTVLQELKKLPPLP 247
>gi|148682396|gb|EDL14343.1| staufen (RNA binding protein) homolog 2 (Drosophila), isoform CRA_a
[Mus musculus]
Length = 370
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 119 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEIS 178
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 179 LVFEIALKRNMPVS-FEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 233
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 234 TTVLQELKKLPPLP 247
>gi|354464998|ref|XP_003494967.1| PREDICTED: double-stranded RNA-specific editase B2 [Cricetulus
griseus]
Length = 739
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 176 KNVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L L+ GL + + G H P F VEV+G F G G TKKKA+M+AA+
Sbjct: 121 KNALVQLHELKPGLQYRMVS--QTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAAE 177
Query: 235 VAYTALIE 242
+A + ++
Sbjct: 178 MALKSFVQ 185
>gi|444731290|gb|ELW71648.1| Double-stranded RNA-specific editase B2 [Tupaia chinensis]
Length = 847
Score = 40.8 bits (94), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 176 KNVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L L+ GL + + G H P F VEV+G F G G TKKKA+M+AA+
Sbjct: 116 KNALVQLHELKPGLQYRMVS--QTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAAE 172
Query: 235 VAYTALIE 242
+A + ++
Sbjct: 173 LALKSFVQ 180
>gi|419589670|ref|ZP_14125455.1| ribonuclease III [Campylobacter coli 317/04]
gi|380566873|gb|EIA89433.1| ribonuclease III [Campylobacter coli 317/04]
Length = 224
Score = 40.8 bits (94), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKTK+QE+ K P+Y T++ G DH +F+ ++ ++G +++ S KE+Q A
Sbjct: 155 YKTKLQEITQAKLGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAG-SKKEAQQMA 213
Query: 61 AKL 63
AK+
Sbjct: 214 AKI 216
>gi|392428570|ref|YP_006469581.1| ribonuclease III [Streptococcus intermedius JTH08]
gi|419775910|ref|ZP_14301835.1| ribonuclease III [Streptococcus intermedius SK54]
gi|423070522|ref|ZP_17059298.1| ribonuclease 3 [Streptococcus intermedius F0413]
gi|424787591|ref|ZP_18214355.1| ribonuclease III [Streptococcus intermedius BA1]
gi|355365608|gb|EHG13330.1| ribonuclease 3 [Streptococcus intermedius F0413]
gi|383846458|gb|EID83855.1| ribonuclease III [Streptococcus intermedius SK54]
gi|391757716|dbj|BAM23333.1| ribonuclease III [Streptococcus intermedius JTH08]
gi|422113345|gb|EKU17083.1| ribonuclease III [Streptococcus intermedius BA1]
Length = 232
Score = 40.8 bits (94), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK L EL G LY+ + + G H F V VDG V GR+KK AE +AA
Sbjct: 161 YKTKLQELLQVNGDVEILYQVVSETGPAHAKEFAVSVSVDGRVVGDGKGRSKKLAEQEAA 220
Query: 234 KVAY 237
K AY
Sbjct: 221 KNAY 224
>gi|449494262|ref|XP_004175290.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 4 [Taeniopygia guttata]
Length = 532
Score = 40.8 bits (94), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + +D K+
Sbjct: 113 TVGNSEFFGEGKTRQAARHNAAMKALQALQNEPIPEKLPQNGETGKESEEDKDANKSEIS 172
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
V+ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 173 VVFEIALKRNIPV-TFEVIKESGPPHMKSFVTRVTV-GEFTAEGEGNSKKLSKKRA---A 227
Query: 237 YTALIERKLIFSLP 250
L E K + LP
Sbjct: 228 MAVLQELKKLPPLP 241
>gi|347549202|ref|YP_004855530.1| putative ribonuclease III [Listeria ivanovii subsp. ivanovii PAM
55]
gi|346982273|emb|CBW86267.1| Putative ribonuclease III [Listeria ivanovii subsp. ivanovii PAM
55]
Length = 230
Score = 40.8 bits (94), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 138 EHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETI- 196
++ AKV F + IF YL + V YK L E+ R+ + Y+ +
Sbjct: 131 DNGIAKVVTF------LERIIFPKIDAGAYL--ETVDYKTQLQEIVQRDRDVLIEYDILG 182
Query: 197 KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERK 244
+ G H F + V V+G+V +GRTKK+AE AA+ A L R+
Sbjct: 183 ETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQLTHRQ 230
>gi|261419391|ref|YP_003253073.1| ribonuclease III [Geobacillus sp. Y412MC61]
gi|319766206|ref|YP_004131707.1| ribonuclease III [Geobacillus sp. Y412MC52]
gi|448237348|ref|YP_007401406.1| ribonuclease 3 [Geobacillus sp. GHH01]
gi|261375848|gb|ACX78591.1| ribonuclease III [Geobacillus sp. Y412MC61]
gi|317111072|gb|ADU93564.1| ribonuclease III [Geobacillus sp. Y412MC52]
gi|445206190|gb|AGE21655.1| ribonuclease 3 [Geobacillus sp. GHH01]
Length = 246
Score = 40.8 bits (94), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Query: 148 SLACDDFQEAIFLYAHVSMY-LWDDGVF-----YKNVLHELSLREGLPVPLYETIKCGAP 201
+L D +A+ + +M+ D+G F +K+ L EL R+G Y ++ P
Sbjct: 141 ALYLDQGMDAVIRFLEKTMFPKIDEGAFSHVMDFKSQLQELVQRDGSGTLEYAILEEKGP 200
Query: 202 -HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
H F++ V ++G+ GR+KK+AE AA++A L
Sbjct: 201 AHNKEFVARVALNGQELGIGVGRSKKEAEQHAAQMALETL 240
>gi|26337823|dbj|BAC32597.1| unnamed protein product [Mus musculus]
Length = 701
Score = 40.8 bits (94), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 176 KNVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L L+ GL + + G H P F VEV+G F G G TKKKA+M+AA+
Sbjct: 127 KNALVQLHELKPGLQYRMVS--QTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAAE 183
Query: 235 VAYTALIE 242
+A + ++
Sbjct: 184 MALKSFVQ 191
>gi|83644632|ref|YP_433067.1| ribonuclease III [Hahella chejuensis KCTC 2396]
gi|123534042|sp|Q2SL32.1|RNC_HAHCH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|83632675|gb|ABC28642.1| ribonuclease III [Hahella chejuensis KCTC 2396]
Length = 226
Score = 40.8 bits (94), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 84 KSVLQNYARRKNLDSPLYSSIR-EGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
K+ LQ Y + + L+ P Y I +G AHA +F R IDG + + + + AE AA
Sbjct: 156 KTRLQEYLQARQLNLPRYEVISVQGEAHAQTFHVRCEIDGLSDATEGTGSSRRVAEQKAA 215
Query: 143 KVALFSLACD 152
K AL +L D
Sbjct: 216 KQALLALGVD 225
>gi|8699065|gb|AAF78580.1| RNA adenosine deaminase RED2 [Mus musculus]
Length = 731
Score = 40.8 bits (94), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 176 KNVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L L+ GL + + G H P F VEV+G F G G TKKKA+M+AA+
Sbjct: 117 KNALVQLHELKPGLQYRMVS--QTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAAE 173
Query: 235 VAYTALIE 242
+A + ++
Sbjct: 174 MALKSFVQ 181
>gi|8571466|gb|AAF76894.1|AF270495_1 RNA dependent adenosine deaminase 3 [Mus musculus]
Length = 745
Score = 40.8 bits (94), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 176 KNVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L L+ GL + + G H P F VEV+G F G G TKKKA+M+AA+
Sbjct: 127 KNALVQLHELKPGLQYRMVS--QTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAAE 183
Query: 235 VAYTALIE 242
+A + ++
Sbjct: 184 MALKSFVQ 191
>gi|348575574|ref|XP_003473563.1| PREDICTED: double-stranded RNA-specific editase B2 [Cavia
porcellus]
Length = 784
Score = 40.8 bits (94), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 176 KNVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L L+ GL + + G H P F VEV+G F G G TKKKA+M+AA+
Sbjct: 166 KNALVQLHELKPGLQYRMVS--QTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAAE 222
Query: 235 VAYTALIE 242
+A + ++
Sbjct: 223 LALKSFVQ 230
>gi|449494258|ref|XP_004175289.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 3 [Taeniopygia guttata]
Length = 570
Score = 40.8 bits (94), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + +D K+
Sbjct: 113 TVGNSEFFGEGKTRQAARHNAAMKALQALQNEPIPEKLPQNGETGKESEEDKDANKSEIS 172
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
V+ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 173 VVFEIALKRNIPV-TFEVIKESGPPHMKSFVTRVTV-GEFTAEGEGNSKKLSKKRA---A 227
Query: 237 YTALIERKLIFSLP 250
L E K + LP
Sbjct: 228 MAVLQELKKLPPLP 241
>gi|372324770|ref|ZP_09519359.1| Ribonuclease III [Oenococcus kitaharae DSM 17330]
gi|366983578|gb|EHN58977.1| Ribonuclease III [Oenococcus kitaharae DSM 17330]
Length = 231
Score = 40.8 bits (94), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 150 ACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIK--CGAPHMPTFI 207
A DF IF A V +++ + YK+ L EL R+G Y+ +K P F
Sbjct: 137 AVFDFLNQIFFPA-VDAGFFEEFIDYKSKLQELLQRDGSVDIEYKVVKEDLSDAQKPHFE 195
Query: 208 SMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALI 241
V VDG+ +GR+ K AE KAAKVAY ++
Sbjct: 196 VAVFVDGQPLGSGSGRSIKIAEKKAAKVAYGDVL 229
>gi|344238997|gb|EGV95100.1| Double-stranded RNA-specific editase B2 [Cricetulus griseus]
Length = 708
Score = 40.8 bits (94), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 176 KNVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L L+ GL + + G H P F VEV+G F G G TKKKA+M+AA+
Sbjct: 90 KNALVQLHELKPGLQYRMVS--QTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAAE 146
Query: 235 VAYTALIE 242
+A + ++
Sbjct: 147 MALKSFVQ 154
>gi|71896437|ref|NP_001026112.1| double-stranded RNA-binding protein Staufen homolog 2 [Gallus
gallus]
gi|53130432|emb|CAG31545.1| hypothetical protein RCJMB04_7n10 [Gallus gallus]
Length = 472
Score = 40.8 bits (94), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + +D K+
Sbjct: 223 TVGNSEFFGEGKTRQAARHNAAMKALQALQNEPIPEKLPQNGEAGKETEEDKDANKSEIS 282
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
V+ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 283 VVFEIALKRNIPV-SFEVIKESGPPHMKSFVTRVTV-GEFTAEGEGNSKKLSKERA---A 337
Query: 237 YTALIERKLIFSLP 250
+ L E K + LP
Sbjct: 338 MSVLQELKKLPPLP 351
>gi|74148073|dbj|BAE22359.1| unnamed protein product [Mus musculus]
Length = 745
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 176 KNVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L L+ GL + + G H P F VEV+G F G G TKKKA+M+AA+
Sbjct: 127 KNALVQLHELKPGLQYRMVS--QTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAAE 183
Query: 235 VAYTALIE 242
+A + ++
Sbjct: 184 MALKSFVQ 191
>gi|389866045|ref|YP_006368286.1| ribonuclease 3 [Modestobacter marinus]
gi|388488249|emb|CCH89822.1| Ribonuclease 3 [Modestobacter marinus]
Length = 242
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKK 227
+K L EL +GL P+Y+ G H TF ++V + G++ GRTKK
Sbjct: 166 WKTSLQELGAGQGLGAPVYDVEDTGPDHAKTFTAVVSLAGQIRGKGTGRTKKA 218
>gi|345324200|ref|XP_001511395.2| PREDICTED: double-stranded RNA-specific editase B2-like
[Ornithorhynchus anatinus]
Length = 893
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 176 KNVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L L+ GL + + G H P F VEV+G F G G TKKKA+M+AA+
Sbjct: 273 KNALVQLHELKPGLQYRMVS--QTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAAE 329
Query: 235 VAYTALIE 242
+A + ++
Sbjct: 330 LALRSFVQ 337
>gi|304321233|ref|YP_003854876.1| ribonuclease III [Parvularcula bermudensis HTCC2503]
gi|303300135|gb|ADM09734.1| ribonuclease III [Parvularcula bermudensis HTCC2503]
Length = 238
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 60 AAKLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSI-REGPAHACSFKARV 118
AAK AF + +P + K+ LQ +A+ K L +P Y I R+GP HA F V
Sbjct: 142 AAKTAFETYWTPRVEELIDDHADAKTALQEWAQEKGLGTPSYRDIDRDGPDHAPIFTVAV 201
Query: 119 TIDGHTFESLEFFK-NLKQAEHAAAKVAL 146
+ G ES E N + A+ AA+ L
Sbjct: 202 VVQG--LESAEARGPNKRSAQMQAARSIL 228
>gi|31542106|ref|NP_443209.2| double-stranded RNA-specific editase B2 [Mus musculus]
gi|33112435|sp|Q9JI20.2|RED2_MOUSE RecName: Full=Double-stranded RNA-specific editase B2; AltName:
Full=RNA-dependent adenosine deaminase 3; AltName:
Full=RNA-editing deaminase 2; AltName: Full=RNA-editing
enzyme 2; AltName: Full=dsRNA adenosine deaminase B2
gi|26329549|dbj|BAC28513.1| unnamed protein product [Mus musculus]
gi|30851427|gb|AAH52426.1| Adenosine deaminase, RNA-specific, B2 [Mus musculus]
gi|74224054|dbj|BAE23882.1| unnamed protein product [Mus musculus]
gi|74226553|dbj|BAE23939.1| unnamed protein product [Mus musculus]
gi|148700330|gb|EDL32277.1| adenosine deaminase, RNA-specific, B2, isoform CRA_b [Mus musculus]
Length = 745
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 176 KNVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L L+ GL + + G H P F VEV+G F G G TKKKA+M+AA+
Sbjct: 127 KNALVQLHELKPGLQYRMVS--QTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAAE 183
Query: 235 VAYTALIE 242
+A + ++
Sbjct: 184 MALKSFVQ 191
>gi|332826415|ref|XP_003311808.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
[Pan troglodytes]
Length = 474
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 55 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEIS 114
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 115 LVFEIALKRNMPVS-FEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 169
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 170 TTVLQELKKLPPLP 183
>gi|291388131|ref|XP_002710684.1| PREDICTED: staufen homolog 2 isoform 2 [Oryctolagus cuniculus]
Length = 504
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 47 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEVDDDKDANKSEIS 106
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 107 LVFEIALKRNMPVS-FEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 161
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 162 TTVLQELKKLPPLP 175
>gi|256419005|ref|NP_001157857.1| double-stranded RNA-binding protein Staufen homolog 2 isoform f
[Homo sapiens]
Length = 473
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 113 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDVDDDKDANKSEIS 172
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 173 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 227
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 228 TTVLQELKKLPPLP 241
>gi|37590574|gb|AAH59822.1| Adarb2 protein [Mus musculus]
Length = 701
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 176 KNVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L L+ GL + + G H P F VEV+G F G G TKKKA+M+AA+
Sbjct: 127 KNALVQLHELKPGLQYRMVS--QTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAAE 183
Query: 235 VAYTALIE 242
+A + ++
Sbjct: 184 MALKSFVQ 191
>gi|116873240|ref|YP_850021.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334]
gi|123466444|sp|A0AJR0.1|RNC_LISW6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116742118|emb|CAK21242.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 229
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 173 VFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V YK L E+ R+ + Y+ + + G H F + V V+G+V +GRTKK+AE
Sbjct: 158 VDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQS 217
Query: 232 AAKVAYTALIER 243
AA+ A L R
Sbjct: 218 AAQFAINQLTHR 229
>gi|16800985|ref|NP_471253.1| ribonuclease III [Listeria innocua Clip11262]
gi|422413349|ref|ZP_16490308.1| ribonuclease III [Listeria innocua FSL S4-378]
gi|423098714|ref|ZP_17086422.1| ribonuclease III [Listeria innocua ATCC 33091]
gi|22654065|sp|Q92AK3.1|RNC_LISIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|16414420|emb|CAC97149.1| rncS [Listeria innocua Clip11262]
gi|313618316|gb|EFR90363.1| ribonuclease III [Listeria innocua FSL S4-378]
gi|370794541|gb|EHN62304.1| ribonuclease III [Listeria innocua ATCC 33091]
Length = 229
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 173 VFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V YK L E+ R+ + Y+ + + G H F + V V+G+V +GRTKK+AE
Sbjct: 158 VDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQS 217
Query: 232 AAKVAYTALIER 243
AA+ A L R
Sbjct: 218 AAQFAINQLTHR 229
>gi|297530632|ref|YP_003671907.1| ribonuclease III [Geobacillus sp. C56-T3]
gi|297253884|gb|ADI27330.1| ribonuclease III [Geobacillus sp. C56-T3]
Length = 246
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Query: 148 SLACDDFQEAIFLYAHVSMY-LWDDGVF-----YKNVLHELSLREGLPVPLYETIKCGAP 201
+L D +A+ + +M+ D+G F +K+ L EL R+G Y ++ P
Sbjct: 141 ALYLDQGMDAVIRFLEKTMFPKIDEGAFSHVMDFKSQLQELVQRDGSGTLEYAILEEKGP 200
Query: 202 -HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
H F++ V ++G+ GR+KK+AE AA++A L
Sbjct: 201 AHNKEFVARVALNGQELGIGVGRSKKEAEQHAAQMALETL 240
>gi|449275316|gb|EMC84189.1| Double-stranded RNA-binding protein Staufen like protein 2 [Columba
livia]
Length = 558
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + +D K+
Sbjct: 186 TVGNSEFFGEGKTRQAARHNAAMKALQALQNEPIPEKLPQNGETGKESEEDKDANKSEIS 245
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
V+ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 246 VVFEIALKRNIPV-SFEVIKESGPPHMKSFVTRVTV-GEFTAEGEGNSKKLSKKRA---A 300
Query: 237 YTALIERKLIFSLP 250
L E K + LP
Sbjct: 301 MAVLQELKKLPPLP 314
>gi|419683175|ref|ZP_14211884.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1213]
gi|380659791|gb|EIB75756.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1213]
Length = 224
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKTK+QE+ + P+Y T++ G DH +F+ ++ ++G +++ S KE+Q A
Sbjct: 155 YKTKLQEITQGEIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAG-SKKEAQQMA 213
Query: 61 AKLAF 65
AK+A
Sbjct: 214 AKIAL 218
>gi|148700329|gb|EDL32276.1| adenosine deaminase, RNA-specific, B2, isoform CRA_a [Mus musculus]
Length = 742
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 176 KNVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L L+ GL + + G H P F VEV+G F G G TKKKA+M+AA+
Sbjct: 127 KNALVQLHELKPGLQYRMVS--QTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAAE 183
Query: 235 VAYTALIE 242
+A + ++
Sbjct: 184 MALKSFVQ 191
>gi|18959240|ref|NP_579836.1| double-stranded RNA-specific editase B2 [Rattus norvegicus]
gi|33112433|sp|P97616.1|RED2_RAT RecName: Full=Double-stranded RNA-specific editase B2; AltName:
Full=RNA-dependent adenosine deaminase 3; AltName:
Full=RNA-editing deaminase 2; AltName: Full=RNA-editing
enzyme 2; AltName: Full=dsRNA adenosine deaminase B2
gi|1814270|gb|AAB41862.1| double-stranded RNA specific adenosine deaminase [Rattus
norvegicus]
Length = 746
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 176 KNVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L L+ GL + + G H P F VEV+G F G G TKKKA+M+AA+
Sbjct: 128 KNALVQLHELKPGLQYRMVS--QTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAAE 184
Query: 235 VAYTALIE 242
+A + ++
Sbjct: 185 MALKSFVQ 192
>gi|149031451|gb|EDL86441.1| adenosine deaminase, RNA-specific, B2 [Rattus norvegicus]
Length = 746
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 176 KNVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L L+ GL + + G H P F VEV+G F G G TKKKA+M+AA+
Sbjct: 128 KNALVQLHELKPGLQYRMVS--QTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAAE 184
Query: 235 VAYTALIE 242
+A + ++
Sbjct: 185 MALKSFVQ 192
>gi|398831537|ref|ZP_10589715.1| ribonuclease III [Phyllobacterium sp. YR531]
gi|398212244|gb|EJM98853.1| ribonuclease III [Phyllobacterium sp. YR531]
Length = 238
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 3 KTKVQELCHQKRWSLPRYSTM-KDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
KT++QE HQ+ + P YS + + G DHDP+F V+V G F + SK A
Sbjct: 160 KTELQEWAHQQDGAQPLYSVVERTGPDHDPQFTIRVNVKG--FEPATGKGRSKRLAEQEA 217
Query: 62 KLAFLH 67
+A L+
Sbjct: 218 AIALLY 223
>gi|358445257|ref|ZP_09155867.1| ribonuclease III [Corynebacterium casei UCMA 3821]
gi|356608703|emb|CCE54110.1| ribonuclease III [Corynebacterium casei UCMA 3821]
Length = 244
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QELC +++ +P Y+ G +HD F + V V G + + Q+ A
Sbjct: 176 WKTTLQELCAERKMPMPEYTATSTGPEHDQLFSAQVFVEGQLLGEGMGPNKKQAEQHAAE 235
Query: 62 KLAFL 66
K + +
Sbjct: 236 KASLI 240
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 18/170 (10%)
Query: 72 PPPPPPNVQCRYKSVLQNY-----ARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFE 126
P P ++ S++ Y AR L + Y + +G H + + +I T E
Sbjct: 81 PMRPESDISKMRASIVSRYGLSDVAREIGLGA--YILLGKGE-HNSKGREKDSILSDTME 137
Query: 127 SLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLRE 186
+L F Q E A+ + +L + + A+ H+ +K L EL
Sbjct: 138 AL-FGAIYLQYEFETARGVILNLFAEKLEAAVSTSNHMD---------WKTTLQELCAER 187
Query: 187 GLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
+P+P Y G H F + V V+G++ G KK+AE AA+ A
Sbjct: 188 KMPMPEYTATSTGPEHDQLFSAQVFVEGQLLGEGMGPNKKQAEQHAAEKA 237
>gi|359420982|ref|ZP_09212913.1| ribonuclease III [Gordonia araii NBRC 100433]
gi|358243255|dbj|GAB10982.1| ribonuclease III [Gordonia araii NBRC 100433]
Length = 243
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 34/72 (47%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L ELS L P Y G H F + V GE GR+KK+AE
Sbjct: 161 GLDWKTSLQELSAARSLGPPAYLISSTGPDHDKEFTATAVVGGEELGTGIGRSKKEAEQV 220
Query: 232 AAKVAYTALIER 243
AA+ A+ AL R
Sbjct: 221 AAQEAWRALDAR 232
>gi|408673367|ref|YP_006873115.1| Ribonuclease 3 [Emticicia oligotrophica DSM 17448]
gi|387854991|gb|AFK03088.1| Ribonuclease 3 [Emticicia oligotrophica DSM 17448]
Length = 248
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
YK++L S +EG + + G H F++ V VDGE G KKKAE +AA+
Sbjct: 179 YKSILLSWSQQEGKRITFEIIQENGKHHHKEFVAQVSVDGEAVSKGGGWNKKKAEQEAAR 238
Query: 235 VA 236
A
Sbjct: 239 RA 240
>gi|291409122|ref|XP_002720862.1| PREDICTED: adenosine deaminase, RNA-specific, B2-like [Oryctolagus
cuniculus]
Length = 734
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 176 KNVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L L+ GL + + G H P F VEV+G F G G TKKKA+M+AA+
Sbjct: 116 KNALVQLHELKPGLQYRMVS--QTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAAE 172
Query: 235 VAYTALIE 242
+A + ++
Sbjct: 173 LALKSFVQ 180
>gi|47097388|ref|ZP_00234939.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854]
gi|217964043|ref|YP_002349721.1| ribonuclease III [Listeria monocytogenes HCC23]
gi|254829200|ref|ZP_05233887.1| ribonuclease III [Listeria monocytogenes FSL N3-165]
gi|254912363|ref|ZP_05262375.1| ribonuclease III [Listeria monocytogenes J2818]
gi|254936690|ref|ZP_05268387.1| ribonuclease III [Listeria monocytogenes F6900]
gi|290893065|ref|ZP_06556054.1| ribonuclease III [Listeria monocytogenes FSL J2-071]
gi|386008577|ref|YP_005926855.1| ribonuclease III [Listeria monocytogenes L99]
gi|386027184|ref|YP_005947960.1| putative ribonuclease III [Listeria monocytogenes M7]
gi|386047457|ref|YP_005965789.1| ribonuclease III [Listeria monocytogenes J0161]
gi|404408249|ref|YP_006690964.1| ribonuclease III [Listeria monocytogenes SLCC2376]
gi|404413884|ref|YP_006699471.1| ribonuclease III [Listeria monocytogenes SLCC7179]
gi|422410046|ref|ZP_16487007.1| ribonuclease III [Listeria monocytogenes FSL F2-208]
gi|422809886|ref|ZP_16858297.1| Ribonuclease III [Listeria monocytogenes FSL J1-208]
gi|254807893|sp|B8DDU8.1|RNC_LISMH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|47014236|gb|EAL05218.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854]
gi|217333313|gb|ACK39107.1| ribonuclease III [Listeria monocytogenes HCC23]
gi|258601611|gb|EEW14936.1| ribonuclease III [Listeria monocytogenes FSL N3-165]
gi|258609286|gb|EEW21894.1| ribonuclease III [Listeria monocytogenes F6900]
gi|290557425|gb|EFD90950.1| ribonuclease III [Listeria monocytogenes FSL J2-071]
gi|293590344|gb|EFF98678.1| ribonuclease III [Listeria monocytogenes J2818]
gi|307571387|emb|CAR84566.1| ribonuclease III [Listeria monocytogenes L99]
gi|313608181|gb|EFR84216.1| ribonuclease III [Listeria monocytogenes FSL F2-208]
gi|336023765|gb|AEH92902.1| putative ribonuclease III [Listeria monocytogenes M7]
gi|345534448|gb|AEO03889.1| ribonuclease III [Listeria monocytogenes J0161]
gi|378751550|gb|EHY62138.1| Ribonuclease III [Listeria monocytogenes FSL J1-208]
gi|404239583|emb|CBY60984.1| ribonuclease III [Listeria monocytogenes SLCC7179]
gi|404242398|emb|CBY63798.1| ribonuclease III [Listeria monocytogenes SLCC2376]
Length = 229
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 173 VFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V YK L E+ R+ + Y+ + + G H F + V V+G+V +GRTKK+AE
Sbjct: 158 VDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQS 217
Query: 232 AAKVAYTALIER 243
AA+ A L R
Sbjct: 218 AAQFAINQLTHR 229
>gi|284802251|ref|YP_003414116.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578]
gi|284995393|ref|YP_003417161.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923]
gi|386044113|ref|YP_005962918.1| ribonuclease III [Listeria monocytogenes 10403S]
gi|386054060|ref|YP_005971618.1| ribonuclease III [Listeria monocytogenes Finland 1998]
gi|404411106|ref|YP_006696694.1| ribonuclease III [Listeria monocytogenes SLCC5850]
gi|284057813|gb|ADB68754.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578]
gi|284060860|gb|ADB71799.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923]
gi|345537347|gb|AEO06787.1| ribonuclease III [Listeria monocytogenes 10403S]
gi|346646711|gb|AEO39336.1| ribonuclease III [Listeria monocytogenes Finland 1998]
gi|404230932|emb|CBY52336.1| ribonuclease III [Listeria monocytogenes SLCC5850]
gi|441471562|emb|CCQ21317.1| Ribonuclease 3 [Listeria monocytogenes]
gi|441474693|emb|CCQ24447.1| Ribonuclease 3 [Listeria monocytogenes N53-1]
Length = 229
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 173 VFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V YK L E+ R+ + Y+ + + G H F + V V+G+V +GRTKK+AE
Sbjct: 158 VDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQS 217
Query: 232 AAKVAYTALIER 243
AA+ A L R
Sbjct: 218 AAQFAINQLTHR 229
>gi|46908036|ref|YP_014425.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365]
gi|47093844|ref|ZP_00231588.1| ribonuclease III [Listeria monocytogenes str. 4b H7858]
gi|226224408|ref|YP_002758515.1| ribonuclease III [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|254826153|ref|ZP_05231154.1| ribonuclease III [Listeria monocytogenes FSL J1-194]
gi|254852713|ref|ZP_05242061.1| ribonuclease III [Listeria monocytogenes FSL R2-503]
gi|254933277|ref|ZP_05266636.1| ribonuclease III [Listeria monocytogenes HPB2262]
gi|300763882|ref|ZP_07073879.1| ribonuclease III [Listeria monocytogenes FSL N1-017]
gi|386732545|ref|YP_006206041.1| ribonuclease III [Listeria monocytogenes 07PF0776]
gi|404281417|ref|YP_006682315.1| ribonuclease III [Listeria monocytogenes SLCC2755]
gi|404287234|ref|YP_006693820.1| ribonuclease III [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|405750156|ref|YP_006673622.1| ribonuclease III [Listeria monocytogenes ATCC 19117]
gi|405753031|ref|YP_006676496.1| ribonuclease III [Listeria monocytogenes SLCC2378]
gi|405755965|ref|YP_006679429.1| ribonuclease III [Listeria monocytogenes SLCC2540]
gi|406704588|ref|YP_006754942.1| ribonuclease III [Listeria monocytogenes L312]
gi|417317908|ref|ZP_12104509.1| ribonuclease III [Listeria monocytogenes J1-220]
gi|424714681|ref|YP_007015396.1| Ribonuclease 3 [Listeria monocytogenes serotype 4b str. LL195]
gi|424823566|ref|ZP_18248579.1| Ribonuclease 3 [Listeria monocytogenes str. Scott A]
gi|73917580|sp|Q71YL2.1|RNC_LISMF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|259491903|sp|C1KWA4.1|RNC_LISMC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|46881306|gb|AAT04602.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365]
gi|47017785|gb|EAL08574.1| ribonuclease III [Listeria monocytogenes str. 4b H7858]
gi|225876870|emb|CAS05579.1| Putative ribonuclease III [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|258606034|gb|EEW18642.1| ribonuclease III [Listeria monocytogenes FSL R2-503]
gi|293584837|gb|EFF96869.1| ribonuclease III [Listeria monocytogenes HPB2262]
gi|293595393|gb|EFG03154.1| ribonuclease III [Listeria monocytogenes FSL J1-194]
gi|300515618|gb|EFK42668.1| ribonuclease III [Listeria monocytogenes FSL N1-017]
gi|328473534|gb|EGF44371.1| ribonuclease III [Listeria monocytogenes J1-220]
gi|332312246|gb|EGJ25341.1| Ribonuclease 3 [Listeria monocytogenes str. Scott A]
gi|384391303|gb|AFH80373.1| ribonuclease III [Listeria monocytogenes 07PF0776]
gi|404219356|emb|CBY70720.1| ribonuclease III [Listeria monocytogenes ATCC 19117]
gi|404222231|emb|CBY73594.1| ribonuclease III [Listeria monocytogenes SLCC2378]
gi|404225165|emb|CBY76527.1| ribonuclease III [Listeria monocytogenes SLCC2540]
gi|404228052|emb|CBY49457.1| ribonuclease III [Listeria monocytogenes SLCC2755]
gi|404246163|emb|CBY04388.1| ribonuclease III [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|406361618|emb|CBY67891.1| ribonuclease III [Listeria monocytogenes L312]
gi|424013865|emb|CCO64405.1| Ribonuclease 3 [Listeria monocytogenes serotype 4b str. LL195]
Length = 229
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 173 VFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V YK L E+ R+ + Y+ + + G H F + V V+G+V +GRTKK+AE
Sbjct: 158 VDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQS 217
Query: 232 AAKVAYTALIER 243
AA+ A L R
Sbjct: 218 AAQFAINQLTHR 229
>gi|256418993|ref|NP_055208.2| double-stranded RNA-binding protein Staufen homolog 2 isoform e
[Homo sapiens]
gi|256419003|ref|NP_001157856.1| double-stranded RNA-binding protein Staufen homolog 2 isoform e
[Homo sapiens]
gi|168270864|dbj|BAG10225.1| double-stranded RNA-binding protein Staufen homolog 2 [synthetic
construct]
Length = 479
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 119 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDVDDDKDANKSEIS 178
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 179 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 233
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 234 TTVLQELKKLPPLP 247
>gi|89053013|ref|YP_508464.1| ribonuclease III [Jannaschia sp. CCS1]
gi|122499604|sp|Q28V23.1|RNC_JANSC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|88862562|gb|ABD53439.1| RNAse III [Jannaschia sp. CCS1]
Length = 227
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 84 KSVLQNYARRKNLDSPLYSSI-REGPAHACSFKARVTI-DGHTFESLEFFKNLKQAEHAA 141
K+ LQ +A+ + + P Y+ + R GP HA F+ RVT+ G E+ K +QAE A
Sbjct: 159 KTALQEWAQARGMAPPTYTEVARSGPDHAPVFRVRVTLSSGENAEAQA--KAKRQAEQQA 216
Query: 142 AKVALFSLACD 152
AK L LA +
Sbjct: 217 AKDLLAQLAGE 227
>gi|317125435|ref|YP_004099547.1| RNAse III [Intrasporangium calvum DSM 43043]
gi|315589523|gb|ADU48820.1| RNAse III [Intrasporangium calvum DSM 43043]
Length = 265
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 137 AEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDD-----GVFYKNVLHELSLREGLPVP 191
A+ A + L+ D A F++ H L + G+ +K L +++ G P
Sbjct: 135 ADSMEALIGTVYLSTDIDLAAQFIHHHFDAILEEAATLGAGLDWKTSLQQVAAAVGQGAP 194
Query: 192 LYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERK 244
Y + G H F + V + EV GR+KK+AE KAA+ A+ +L R+
Sbjct: 195 EYRVAEQGPDHEKEFHARVVLGEEVLGEGHGRSKKEAEQKAAQEAWQSLESRR 247
>gi|300868242|ref|ZP_07112873.1| hypothetical protein OSCI_3600020 [Oscillatoria sp. PCC 6506]
gi|300333766|emb|CBN58057.1| hypothetical protein OSCI_3600020 [Oscillatoria sp. PCC 6506]
Length = 328
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 191 PLYETIKCG-APHMPTFISMVEVDGEVFYGKA-GRTKKKAEMKAAKVAYTALIERKLI 246
P Y TI G APH P +++ V V GE YG+ G +KK+AE AA+ A L +R LI
Sbjct: 272 PKYVTIHAGGAPHKPEYLAKVYV-GEKLYGEGKGSSKKEAEKNAAEDALARLKKRGLI 328
>gi|195045715|ref|XP_001992024.1| GH24441 [Drosophila grimshawi]
gi|193892865|gb|EDV91731.1| GH24441 [Drosophila grimshawi]
Length = 633
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN + L+ LR+GL L + G H P F VEVDG+ + G+ GR+KK A ++AA
Sbjct: 57 KNTVAMLNELRQGLIYKLES--QTGPVHAPLFTISVEVDGQKYMGQ-GRSKKVARIEAAA 113
Query: 235 VAYTALIERK 244
A + I+ K
Sbjct: 114 TALRSFIQFK 123
>gi|258514469|ref|YP_003190691.1| ribonuclease III [Desulfotomaculum acetoxidans DSM 771]
gi|257778174|gb|ACV62068.1| ribonuclease III [Desulfotomaculum acetoxidans DSM 771]
Length = 259
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 2 YKTKVQELCHQKRWSLPRYSTM-KDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKT++QE+ +K Y + ++G DH F + V G+ +S KE++ A
Sbjct: 165 YKTELQEMLQKKSPEPISYVILNEEGPDHQKLFTAGVVYCGIIIGQGTG-RSKKEAEQQA 223
Query: 61 AKLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRK 94
AK+A L P + R +S L ARR+
Sbjct: 224 AKIALLEL-----PSNGEINLRVRSHLHTGARRR 252
>gi|315282805|ref|ZP_07871128.1| ribonuclease III [Listeria marthii FSL S4-120]
gi|313613534|gb|EFR87355.1| ribonuclease III [Listeria marthii FSL S4-120]
Length = 229
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 173 VFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V YK L E+ R+ + Y+ + + G H F + V V+G+V +GRTKK+AE
Sbjct: 158 VDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQS 217
Query: 232 AAKVAYTALIER 243
AA+ A L R
Sbjct: 218 AAQFAINQLTHR 229
>gi|441647443|ref|XP_004090811.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 2 [Nomascus leucogenys]
Length = 504
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 47 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDDKDANKSEIS 106
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 107 LVFEIALKRNMPVS-FEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 161
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 162 TTVLQELKKLPPLP 175
>gi|374339789|ref|YP_005096525.1| ribonuclease III [Marinitoga piezophila KA3]
gi|372101323|gb|AEX85227.1| ribonuclease III [Marinitoga piezophila KA3]
Length = 240
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKC-GAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK L EL+ ++ P Y ++ G PH TF+ V+++G+V+ G++KK AE AA
Sbjct: 169 YKTRLQELTQKDLKIRPEYNLVRQDGPPHNRTFVVEVKINGKVYGKGIGKSKKVAEQLAA 228
Query: 234 KVA 236
K A
Sbjct: 229 KEA 231
>gi|300797105|ref|NP_001179517.1| double-stranded RNA-specific editase B2 [Bos taurus]
Length = 734
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 176 KNVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L LR GL + + G H P F V+V+G F G G TKKKA+M+AA+
Sbjct: 127 KNALVQLHELRPGLQFRMVS--QTGPVHAPIFAVAVDVNGLTFEG-TGPTKKKAKMRAAE 183
Query: 235 VAYTALIE 242
+A + ++
Sbjct: 184 LALRSFVQ 191
>gi|218780584|ref|YP_002431902.1| ribonuclease III [Desulfatibacillum alkenivorans AK-01]
gi|218761968|gb|ACL04434.1| Ribonuclease III [Desulfatibacillum alkenivorans AK-01]
Length = 535
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
YK+ LQ YA+ K +P Y IRE GP H +F A+ T++ F S ++ K AE A
Sbjct: 463 YKTRLQEYAQSKLRITPSYELIREFGPDHEKTFVAQATVN-KEFTSQGKGRSKKAAEQDA 521
Query: 142 AKVALFSLACDD 153
A+ L L +D
Sbjct: 522 AREVLILLGQED 533
>gi|116628032|ref|YP_820651.1| ribonuclease III [Streptococcus thermophilus LMD-9]
gi|386086915|ref|YP_006002789.1| ribonuclease 3 [Streptococcus thermophilus ND03]
gi|386344992|ref|YP_006041156.1| ribonuclease III [Streptococcus thermophilus JIM 8232]
gi|387910019|ref|YP_006340325.1| ribonuclease III [Streptococcus thermophilus MN-ZLW-002]
gi|122267372|sp|Q03K17.1|RNC_STRTD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116101309|gb|ABJ66455.1| RNAse III [Streptococcus thermophilus LMD-9]
gi|312278628|gb|ADQ63285.1| Ribonuclease 3 [Streptococcus thermophilus ND03]
gi|339278453|emb|CCC20201.1| ribonuclease III [Streptococcus thermophilus JIM 8232]
gi|387574954|gb|AFJ83660.1| ribonuclease III [Streptococcus thermophilus MN-ZLW-002]
Length = 229
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 65 FLHFTSPPPPPPPNVQ--CRYKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTID 121
FL+ P N YK+ LQ + Y+ I E GPAHA F +V +D
Sbjct: 141 FLNQVMIPQVEKGNFDRVIDYKTALQERLQVNGKVDITYTVIDESGPAHAKEFTMQVAVD 200
Query: 122 GHTFESLEFFKNLKQAEHAAAKVALFSLA 150
G S F K+ K AE AAAK AL L
Sbjct: 201 GKEL-STGFGKSKKLAEQAAAKSALEQLG 228
>gi|427428070|ref|ZP_18918112.1| Ribonuclease III [Caenispirillum salinarum AK4]
gi|425882771|gb|EKV31450.1| Ribonuclease III [Caenispirillum salinarum AK4]
Length = 229
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 176 KNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
K L E + +G P+P YET++ P H P F+ V V G G +K+KAE AA+
Sbjct: 161 KTALQEWAQGQGKPLPAYETVETTGPAHDPRFVVAVTVQGIAPATGTGTSKRKAEQMAAE 220
>gi|373454282|ref|ZP_09546154.1| ribonuclease III [Dialister succinatiphilus YIT 11850]
gi|371936015|gb|EHO63752.1| ribonuclease III [Dialister succinatiphilus YIT 11850]
Length = 244
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKT +QEL + + + RY ++D G DHD +++NG F + + K+ KE+ A
Sbjct: 172 YKTDLQELVQKHKEADIRYEVVRDEGPDHDKTIWMKITINGKDFGTGMG-KNKKEAAQKA 230
Query: 61 AKLAF 65
A+ A
Sbjct: 231 AREAI 235
>gi|350583107|ref|XP_003355087.2| PREDICTED: hypothetical protein LOC100516319 [Sus scrofa]
Length = 901
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 141 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSAQNGESGKEMDDDKDANKSEIS 200
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 201 LVFEIALKRNMPVS-FEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 255
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 256 TTVLQELKKLPPLP 269
>gi|296481330|tpg|DAA23445.1| TPA: adenosine deaminase, RNA-specific, B2 [Bos taurus]
Length = 785
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 173 VFYKNVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L LR GL + + G H P F V+V+G F G G TKKKA+M+
Sbjct: 124 VAPKNALVQLHELRPGLQFRMVS--QTGPVHAPIFAVAVDVNGLTFEG-TGPTKKKAKMR 180
Query: 232 AAKVAYTALIE 242
AA++A + ++
Sbjct: 181 AAELALRSFVQ 191
>gi|208690891|gb|ACI31221.1| eukaryotic translation initiation factor 2-alpha kinase 2 [Ateles
geoffroyi]
Length = 552
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%)
Query: 174 FYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
F+K L++ ++G+ + E G PH F V +DG F GR+KK+A AA
Sbjct: 9 FFKEELNKYRQKQGVVLRYKELPNSGPPHDRRFTFQVIIDGREFPEAEGRSKKEATNAAA 68
Query: 234 KVAYTAL 240
KVA L
Sbjct: 69 KVAVEIL 75
>gi|68171854|ref|ZP_00545186.1| Ribonuclease III [Ehrlichia chaffeensis str. Sapulpa]
gi|88658070|ref|YP_507839.1| ribonuclease III [Ehrlichia chaffeensis str. Arkansas]
gi|123492713|sp|Q2GFE4.1|RNC_EHRCR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|67998723|gb|EAM85443.1| Ribonuclease III [Ehrlichia chaffeensis str. Sapulpa]
gi|88599527|gb|ABD44996.1| ribonuclease III [Ehrlichia chaffeensis str. Arkansas]
Length = 226
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 131 FKNLKQAEHAAAKVALFSLACDDFQEAIFLY-AHVSMYLWDDGVFYKNVLHELSLREGLP 189
F+NL+ A A Q+ I+L+ H + ++ K +L EL + LP
Sbjct: 110 FRNLENALEALIGAIYLDGGFTAAQDFIYLFWEHSATHMNVPPQDAKTILQELVQGKRLP 169
Query: 190 VPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKV 235
P Y TI K G H PTF V + G KK AE KAA +
Sbjct: 170 APAYHTIDKSGPDHNPTFTVEVRIPSYQAIQATGHNKKLAEQKAASL 216
>gi|296226706|ref|XP_002759046.1| PREDICTED: double-stranded RNA-binding protein Staufen homolog 2
isoform 3 [Callithrix jacchus]
Length = 504
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 47 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKDMDDDKDANKSEIS 106
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 107 LVFEIALKRNMPVS-FEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 161
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 162 TTVLQELKKLPPLP 175
>gi|319892231|ref|YP_004149106.1| ribonuclease III [Staphylococcus pseudintermedius HKU10-03]
gi|386319501|ref|YP_006015664.1| ribonuclease III [Staphylococcus pseudintermedius ED99]
gi|317161927|gb|ADV05470.1| Ribonuclease III [Staphylococcus pseudintermedius HKU10-03]
gi|323464672|gb|ADX76825.1| ribonuclease III [Staphylococcus pseudintermedius ED99]
Length = 243
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
+KTK QE HQ + +Y K +G H+ F S + +NG + S ++ KES+ A
Sbjct: 173 FKTKFQEYVHQNYLGVIKYRVAKEEGPAHNKTFTSEILLNGEAV-SRGEGRTKKESEQKA 231
Query: 61 AKLAFLHFT 69
A+ A+L T
Sbjct: 232 AEQAYLLMT 240
Score = 38.1 bits (87), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 150 ACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAP-HMPTFIS 208
A F EA+ ++ HV V +K E + L V Y K P H TF S
Sbjct: 149 AVWQFAEAV-IFPHVKGRQLIGVVDFKTKFQEYVHQNYLGVIKYRVAKEEGPAHNKTFTS 207
Query: 209 MVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERK 244
+ ++GE GRTKK++E KAA+ AY + ++
Sbjct: 208 EILLNGEAVSRGEGRTKKESEQKAAEQAYLLMTHKE 243
>gi|256418999|ref|NP_001157854.1| double-stranded RNA-binding protein Staufen homolog 2 isoform c
[Homo sapiens]
Length = 504
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 47 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDVDDDKDANKSEIS 106
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 107 LVFEIALKRNMPVS-FEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 161
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 162 TTVLQELKKLPPLP 175
>gi|448823447|ref|YP_007416612.1| ribonuclease III [Corynebacterium urealyticum DSM 7111]
gi|448276944|gb|AGE36368.1| ribonuclease III [Corynebacterium urealyticum DSM 7111]
Length = 245
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
+K + E LP+P YE G H F + + +DG+ GRTKK+AE +AA+
Sbjct: 176 WKTTVQERLREHDLPMPEYEVTSSGPEHDKAFFATLTLDGKERTRGQGRTKKEAEHQAAR 235
Query: 235 VAYTAL 240
L
Sbjct: 236 AMVEEL 241
>gi|78211701|ref|YP_380480.1| RNAse III [Synechococcus sp. CC9605]
gi|78196160|gb|ABB33925.1| Ribonuclease III [Synechococcus sp. CC9605]
Length = 241
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 176 KNVLHELSLREGLPVPLYETIKCGAPHM--PTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
K L E S +GL +P Y T +C H F V + G GR++K+AE AA
Sbjct: 165 KTTLQEWSQGQGLGLPRYATEECSRQHGDPERFRCQVSIQGRNLAEAKGRSRKEAEQNAA 224
Query: 234 KVAYTAL 240
A AL
Sbjct: 225 TAALQAL 231
>gi|419537205|ref|ZP_14076664.1| ribonuclease III [Campylobacter coli 111-3]
gi|419568861|ref|ZP_14105990.1| ribonuclease III [Campylobacter coli 1417]
gi|419583483|ref|ZP_14119664.1| ribonuclease III [Campylobacter coli 1961]
gi|419587626|ref|ZP_14123539.1| ribonuclease III [Campylobacter coli 67-8]
gi|380515558|gb|EIA41717.1| ribonuclease III [Campylobacter coli 111-3]
gi|380544843|gb|EIA68849.1| ribonuclease III [Campylobacter coli 1417]
gi|380563074|gb|EIA85920.1| ribonuclease III [Campylobacter coli 1961]
gi|380563757|gb|EIA86585.1| ribonuclease III [Campylobacter coli 67-8]
Length = 224
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKTK+QE+ K P+Y T++ G DH +F+ + +NG +++ + KE+Q A
Sbjct: 155 YKTKLQEITQAKLGQTPQYETVRAFGPDHLKQFEIVLFLNGQELARAIAG-NKKEAQQMA 213
Query: 61 AKL 63
AK+
Sbjct: 214 AKI 216
>gi|417003249|ref|ZP_11942320.1| ribonuclease III [Anaerococcus prevotii ACS-065-V-Col13]
gi|325478725|gb|EGC81836.1| ribonuclease III [Anaerococcus prevotii ACS-065-V-Col13]
Length = 236
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Query: 146 LFSLACDDFQEAIFLYAHVSMYLWDDGVF--YKNVLHELSLREGLPVPLYETIKCGAP-H 202
LF + +++E + + DD +F YK L E + + YE +K P H
Sbjct: 143 LFDILVKNYKEEALVIIN------DDSIFNDYKTKLQEYHNAKDKKILKYELVKEEGPEH 196
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
TF V++ + G+ KK+AE AAK AY +
Sbjct: 197 AKTFTMAVKLGNRILATGVGKNKKQAEQDAAKAAYNKI 234
>gi|68533083|dbj|BAE06096.1| STAU2 variant protein [Homo sapiens]
Length = 490
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 130 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDVDDDKDANKSEIS 189
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 190 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 244
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 245 TTVLQELKKLPPLP 258
>gi|428211293|ref|YP_007084437.1| ribonuclease III [Oscillatoria acuminata PCC 6304]
gi|427999674|gb|AFY80517.1| ribonuclease III [Oscillatoria acuminata PCC 6304]
Length = 386
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 191 PLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
P YETI + G H P F V+V EV+ GR+KK+AE +AA++A
Sbjct: 333 PKYETIAQSGPDHSPDFTVEVKVGNEVYGVGKGRSKKEAEKRAAELA 379
>gi|315303706|ref|ZP_07874220.1| ribonuclease III [Listeria ivanovii FSL F6-596]
gi|313627919|gb|EFR96538.1| ribonuclease III [Listeria ivanovii FSL F6-596]
Length = 229
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Query: 138 EHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETI- 196
++ AKV F + IF YL + V YK L E+ R+ + Y+ +
Sbjct: 131 DNGIAKVVTF------LERIIFPKIDAGAYL--ETVDYKTQLQEIVQRDRDVLIEYDILG 182
Query: 197 KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER 243
+ G H F + V V+G+V +GRTKK+AE AA+ A L R
Sbjct: 183 ETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQLTHR 229
>gi|307776249|pdb|2L2M|A Chain A, Solution Structure Of The Second Dsrbd Of Hyl1
Length = 77
Score = 40.4 bits (93), Expect = 1.4, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 176 KNVLHELSLREGLPVPLYETIKCGA-PHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN+L E + + +PLY+ K + F VE+ G + G A RTKK AE+ A +
Sbjct: 10 KNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGR 69
Query: 235 VAYTAL 240
A A+
Sbjct: 70 TALLAI 75
>gi|296863416|pdb|3ADJ|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
Length = 76
Score = 40.4 bits (93), Expect = 1.4, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 176 KNVLHELSLREGLPVPLYETIKCGA-PHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN+L E + + +PLY+ K + F VE+ G + G A RTKK AE+ A +
Sbjct: 7 KNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGR 66
Query: 235 VAYTAL 240
A A+
Sbjct: 67 TALLAI 72
>gi|296115041|ref|ZP_06833683.1| ribonuclease III [Gluconacetobacter hansenii ATCC 23769]
gi|295978378|gb|EFG85114.1| ribonuclease III [Gluconacetobacter hansenii ATCC 23769]
Length = 255
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 53/136 (38%), Gaps = 22/136 (16%)
Query: 107 GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA-AKVALFSLACDDFQEAIFLYAHVS 165
GP HA +R + H E + L AEH A A V + D EAI ++
Sbjct: 104 GPRHA-HLVSRAVL-AHIAEDMALPSALDVAEHEARAGVRQMANVLADAVEAILGAIYLD 161
Query: 166 MYL----------WDDGVFY--------KNVLHELSLREGLPVPLYETIKCGAP-HMPTF 206
L W++ + K L E L GLP+P+Y+ + P H P F
Sbjct: 162 GGLEPARAFVRRAWNNAIVAQARPPKDPKTALQEWVLARGLPLPVYKVVSTDGPSHAPRF 221
Query: 207 ISMVEVDGEVFYGKAG 222
+ VE G G AG
Sbjct: 222 VISVEASGRRGEGVAG 237
>gi|225180933|ref|ZP_03734381.1| Ribonuclease III [Dethiobacter alkaliphilus AHT 1]
gi|225168414|gb|EEG77217.1| Ribonuclease III [Dethiobacter alkaliphilus AHT 1]
Length = 233
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK ++ E + P Y + P H F++ + ++ EV+ +GR+KK+AE +AA
Sbjct: 163 YKTLMQEYTQASLATTPEYRIVAEQGPDHSKVFVAQLLLNREVYGEGSGRSKKEAEQEAA 222
Query: 234 KVAYTAL 240
+VAY L
Sbjct: 223 RVAYQQL 229
>gi|256832889|ref|YP_003161616.1| ribonuclease III [Jonesia denitrificans DSM 20603]
gi|256686420|gb|ACV09313.1| ribonuclease III [Jonesia denitrificans DSM 20603]
Length = 241
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K + EL + G P P Y+ G H F S V ++ + G +KK AE +
Sbjct: 163 GLDWKTAIQELCAQLGYPQPTYDFTSQGPDHARVFTSTVVIEDRRYGSGEGTSKKLAEQQ 222
Query: 232 AAKVAYTALIERK 244
AA +Y L+ +
Sbjct: 223 AAHRSYDVLVAER 235
>gi|353233363|emb|CCD80718.1| putative trna-dihydrouridine synthase [Schistosoma mansoni]
Length = 491
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 KTKVQELCHQKRWSLPRYSTMKDGADHDPR-FKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
K ++E C +W P+Y T++ D D R F S+V V+G + ++ +CKS K ++ AA
Sbjct: 408 KQILREHCKLLKWDSPKYETIE---DRDKRSFFSTVLVDGRRYRNTSACKSKKYAE-QAA 463
Query: 62 KLAFLHFTSPP 72
L LH P
Sbjct: 464 VLVCLHVLGIP 474
>gi|347761796|ref|YP_004869357.1| ribonuclease III [Gluconacetobacter xylinus NBRC 3288]
gi|347580766|dbj|BAK84987.1| ribonuclease III [Gluconacetobacter xylinus NBRC 3288]
Length = 258
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 176 KNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
K L E L GLP+P Y + P H P F+ V+ G+ G AG +K+ AE AA
Sbjct: 177 KTALQEWVLGRGLPLPRYRVVSAEGPSHAPRFVIAVDAQGKTGQGVAG-SKRAAESDAA 234
>gi|150395906|ref|YP_001326373.1| ribonuclease III [Sinorhizobium medicae WSM419]
gi|189043356|sp|A6U7A8.1|RNC_SINMW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|150027421|gb|ABR59538.1| Ribonuclease III [Sinorhizobium medicae WSM419]
Length = 238
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 3 KTKVQELCHQKRWSLPRYSTM-KDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
KT++QE H + P+Y T + G DHDPRF +V V+G+ + V Q A
Sbjct: 163 KTELQEWAHARFGVAPKYRTEDRSGPDHDPRFTVTVEVDGIDPETGVDRSKRGAEQVAAM 222
Query: 62 KL 63
KL
Sbjct: 223 KL 224
>gi|408406191|gb|ADC93281.1| double-stranded RNA-specific adenosine deaminase [Ctenopharyngodon
idella]
Length = 1392
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 85/217 (39%), Gaps = 41/217 (18%)
Query: 68 FTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIRE-------------GPAHACSF 114
+PPPP R++ + + AR KN S L + GP+H F
Sbjct: 614 LAAPPPPSQSLESSRFQKLKE--ARSKNPVSGLMEFAQHLGHTCEFLLLDQSGPSHDPRF 671
Query: 115 KARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL-------ACDDFQEAIFLYAHVSMY 167
+ +V +DG F E N K A+ AA L L D+ +E F A +
Sbjct: 672 RMQVMLDGRRFPPAEG-SNKKVAKKDAAATTLRILWREMKGAGGDEEEEPSFEGAESTTD 730
Query: 168 LWDD------------------GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISM 209
L +D G +VL E S R G + +T + G PH P F+
Sbjct: 731 LAEDMPSGTDTPPQALSRSLPGGKNPVSVLMEHSQRSGNAIQFIKTGQEGPPHDPRFMFR 790
Query: 210 VEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLI 246
V+V +F + +KK A+ AA+ A L+ L+
Sbjct: 791 VKVGDRLFQEASAPSKKAAKQLAAEEAVKELMGDGLL 827
>gi|402486361|ref|ZP_10833193.1| ribonuclease III [Rhizobium sp. CCGE 510]
gi|401815017|gb|EJT07347.1| ribonuclease III [Rhizobium sp. CCGE 510]
Length = 239
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 3 KTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
KT++QE H K P Y + G DHDPRFK +V V G+ + V Q A
Sbjct: 164 KTELQEWSHAKFGVTPNYRVDERSGPDHDPRFKVTVEVAGIKSETGVERSKRAAEQVAAT 223
Query: 62 KL 63
K+
Sbjct: 224 KM 225
>gi|385799690|ref|YP_005836094.1| RNAse III [Halanaerobium praevalens DSM 2228]
gi|309389054|gb|ADO76934.1| RNAse III [Halanaerobium praevalens DSM 2228]
Length = 237
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK +L E+ G P YE I P H TFI V+++ E G +KK+AE +AA
Sbjct: 167 YKTMLQEVIQDMGNFRPEYEVIDEEGPDHNKTFIVAVKMNEESLGSGQGSSKKEAEQEAA 226
Query: 234 KVAYTAL 240
KVA L
Sbjct: 227 KVALDKL 233
>gi|338535028|ref|YP_004668362.1| ribonuclease III [Myxococcus fulvus HW-1]
gi|337261124|gb|AEI67284.1| ribonuclease III [Myxococcus fulvus HW-1]
Length = 257
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKT +QEL H++ PRY + + G +H F+ + + +F + S +S KE++ A
Sbjct: 170 YKTLLQELAHERLKLQPRYRVVSESGPEHSKVFEVELVLGETAF-ARASGRSKKEAEQSA 228
Query: 61 AKLAFLHF-------TSPPPPPP 76
A+ TSPPP P
Sbjct: 229 AQATLEKLRQDATCPTSPPPGTP 251
>gi|441430520|gb|AGC11944.1| RNA-specific adenosine deaminase [Ctenopharyngodon idella]
Length = 1392
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 85/217 (39%), Gaps = 41/217 (18%)
Query: 68 FTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIRE-------------GPAHACSF 114
+PPPP R++ + + AR KN S L + GP+H F
Sbjct: 614 LAAPPPPSQSLESSRFQKLKE--ARSKNPVSGLMEFAQHLGHTCEFLLLDQSGPSHDPRF 671
Query: 115 KARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL-------ACDDFQEAIFLYAHVSMY 167
+ +V +DG F E N K A+ AA L L D+ +E F A +
Sbjct: 672 RMQVMLDGRRFPPAEG-SNKKVAKKDAAATTLRILWREMKGAGGDEEEEPSFEGAESTTD 730
Query: 168 LWDD------------------GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISM 209
L +D G +VL E S R G + +T + G PH P F+
Sbjct: 731 LAEDMPSGTDTPPQALSRSLPGGKNPVSVLMEHSQRSGNAIQFIKTGQEGPPHDPRFMFR 790
Query: 210 VEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLI 246
V+V +F + +KK A+ AA+ A L+ L+
Sbjct: 791 VKVGDRLFQEASAPSKKAAKQLAAEEAVKELMGDGLL 827
>gi|255521158|ref|ZP_05388395.1| ribonuclease III [Listeria monocytogenes FSL J1-175]
Length = 147
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 173 VFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V YK L E+ R+ + Y+ + + G H F + V V+G+V +GRTKK+AE
Sbjct: 76 VDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQS 135
Query: 232 AAKVAYTALIER 243
AA+ A L R
Sbjct: 136 AAQFAINQLTHR 147
>gi|452750894|ref|ZP_21950641.1| Ribonuclease III [alpha proteobacterium JLT2015]
gi|451962088|gb|EMD84497.1| Ribonuclease III [alpha proteobacterium JLT2015]
Length = 230
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 176 KNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L E + + LP+P Y+ + + G PH P F V + G G +K++AE K
Sbjct: 162 KNALQEWAQQRQLPIPQYQIVGRDGPPHAPRFTVEVHLPGRTPCAGEGSSKQEAE----K 217
Query: 235 VAYTALIERK 244
A T ++E++
Sbjct: 218 AAATQMLEQE 227
>gi|256080282|ref|XP_002576411.1| tRNA-dihydrouridine synthase [Schistosoma mansoni]
Length = 492
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 3 KTKVQELCHQKRWSLPRYSTMKDGADHDPR-FKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
K ++E C +W P+Y T++ D D R F S+V V+G + ++ +CKS K ++ AA
Sbjct: 409 KQILREHCKLLKWDSPKYETIE---DRDKRSFFSTVLVDGRRYRNTSACKSKKYAE-QAA 464
Query: 62 KLAFLHFTSPP 72
L LH P
Sbjct: 465 VLVCLHVLGIP 475
>gi|254780940|ref|YP_003065353.1| ribonuclease III [Candidatus Liberibacter asiaticus str. psy62]
gi|254040617|gb|ACT57413.1| ribonuclease III [Candidatus Liberibacter asiaticus str. psy62]
Length = 227
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 3 KTKVQELCHQKRWSLPRYS-TMKDGADHDPRFKSSVSVNGLSFHSSVSC 50
KT++QE H K P Y T + G DHDPRF V ++GL+ + C
Sbjct: 158 KTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDC 206
>gi|327399771|ref|YP_004340640.1| ribonuclease 3 [Hippea maritima DSM 10411]
gi|327182400|gb|AEA34581.1| Ribonuclease 3 [Hippea maritima DSM 10411]
Length = 234
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKT +QE+ ++ LP Y +K DG +H+ F V + G+ + + KS K+++ +A
Sbjct: 163 YKTHLQEITQKQFGCLPEYVIVKEDGQEHNKTFYCDVMIKGVKYGFGIG-KSKKDAEKNA 221
Query: 61 AKLA 64
AK A
Sbjct: 222 AKEA 225
>gi|389877454|ref|YP_006371019.1| RNAse III [Tistrella mobilis KA081020-065]
gi|388528238|gb|AFK53435.1| RNAse III [Tistrella mobilis KA081020-065]
Length = 242
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 7/49 (14%)
Query: 73 PPPPPNVQCRYKSVLQNYARRKNLDSPLYSSI-REGPAHACSFKARVTI 120
PP P K+ LQ +A+ + L++P+Y+ I REGP HA SF+ R +
Sbjct: 164 PPKDP------KTALQEWAQARGLEAPVYTVIGREGPDHAPSFRVRAQV 206
>gi|354594333|ref|ZP_09012372.1| ribonuclease 3 [Commensalibacter intestini A911]
gi|353672009|gb|EHD13709.1| ribonuclease 3 [Commensalibacter intestini A911]
Length = 245
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 176 KNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKA-GRTKKKAEMKAA 233
K L E L GLP+P+YE + P H P F+ ++V + + G+ GR K+ AE AA
Sbjct: 174 KTALQEWVLARGLPLPVYELVSQEGPSHTPIFV--IKVVAKNYEGRGEGRNKRAAESAAA 231
Query: 234 K 234
K
Sbjct: 232 K 232
>gi|260578984|ref|ZP_05846886.1| ribonuclease III [Corynebacterium jeikeium ATCC 43734]
gi|258602849|gb|EEW16124.1| ribonuclease III [Corynebacterium jeikeium ATCC 43734]
Length = 244
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
+K VL E LP+P YE G H TF + V ++ V +G+ G TKK AE AAK
Sbjct: 176 WKTVLLEKLSDMKLPLPTYEVRGEGPEHDKTFYATVTIEDLVTHGE-GHTKKVAEHAAAK 234
Query: 235 VAYTALIER 243
A L ER
Sbjct: 235 QAVQKLNER 243
>gi|409358245|ref|ZP_11236608.1| ribonuclease III [Dietzia alimentaria 72]
Length = 232
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
+K L E + G P YE G H TF ++V V + GRTKK+AE KAA+
Sbjct: 162 WKTSLQEKAASIGRPKARYEITSTGPDHDKTFSAVVFVGEDSLGQGTGRTKKEAEQKAAE 221
Query: 235 VAYTAL 240
A+ L
Sbjct: 222 QAWAVL 227
>gi|323359692|ref|YP_004226088.1| dsRNA-specific ribonuclease [Microbacterium testaceum StLB037]
gi|323276063|dbj|BAJ76208.1| dsRNA-specific ribonuclease [Microbacterium testaceum StLB037]
Length = 230
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 176 KNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKV 235
K L E++ R +P P Y G H F + V V G+V G +KK+AEM AA
Sbjct: 163 KTSLQEIAARLSVPAPTYSVEAAGPDHDRRFTATVRV-GDVVTTGTGSSKKQAEMAAALT 221
Query: 236 AYTALIER 243
A+ L R
Sbjct: 222 AWRELDAR 229
>gi|431797667|ref|YP_007224571.1| ribonuclease III [Echinicola vietnamensis DSM 17526]
gi|430788432|gb|AGA78561.1| ribonuclease III [Echinicola vietnamensis DSM 17526]
Length = 247
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
+K+ + E S RE V + G F ++V+GEVF G TKKKAE +AAK
Sbjct: 178 FKSKIIEWSQRENKEVEFFLQSVTGTQRFKEFTIELKVEGEVFTEGKGPTKKKAEQEAAK 237
Query: 235 VAYTAL 240
A+ L
Sbjct: 238 NAFEKL 243
>gi|383849955|ref|XP_003700598.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like
[Megachile rotundata]
Length = 467
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 84 KSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAK 143
K++L + + + P Y ++++G F++ VT+DG F S + KN K AE AA
Sbjct: 390 KTILHKWTQSQRKKIPRYDTLQKGKL----FRSIVTVDGRKFGSSFWEKNKKWAEQGAAL 445
Query: 144 VALFSLA 150
V L SL
Sbjct: 446 VCLISLG 452
>gi|374997118|ref|YP_004972617.1| ribonuclease III [Desulfosporosinus orientis DSM 765]
gi|357215484|gb|AET70102.1| ribonuclease III [Desulfosporosinus orientis DSM 765]
Length = 261
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
YK VL E + RE V ++ G H +F + V ++GE+ GRTKK+AE AAK
Sbjct: 188 YKTVLQEKAQREEKEVSYQILLEEGPDHNKSFTAGVFIEGELMGKGIGRTKKEAEQHAAK 247
>gi|329770217|ref|ZP_08261607.1| ribonuclease III [Gemella sanguinis M325]
gi|328837023|gb|EGF86667.1| ribonuclease III [Gemella sanguinis M325]
Length = 237
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 160 LYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFY 218
L+ V + + V YK +L E + L V Y + P H+ TF S V +DG+ +
Sbjct: 151 LFTEVDSFEYLSFVDYKTILQEYVSKIKLGVIEYTVLDSSGPSHLKTFTSAVIIDGKQYG 210
Query: 219 GKAGRTKKKAEMKAAKVAYTAL 240
+TKK++E +AK A L
Sbjct: 211 SGTAKTKKESEQLSAKAALEKL 232
>gi|329890079|ref|ZP_08268422.1| ribonuclease III [Brevundimonas diminuta ATCC 11568]
gi|328845380|gb|EGF94944.1| ribonuclease III [Brevundimonas diminuta ATCC 11568]
Length = 238
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 176 KNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
K+ L E + +G P+P YE + + G+ H PTF V G GR++++AE K
Sbjct: 170 KSALQEWAQGQGRPLPTYEVVQRTGSDHAPTFTVEATVTGYEPARAQGRSRQEAE----K 225
Query: 235 VAYTALIERKLIF 247
A AL++R+ +
Sbjct: 226 AAAIALLKREDVI 238
>gi|374986247|ref|YP_004961742.1| ribonuclease III [Streptomyces bingchenggensis BCW-1]
gi|297156899|gb|ADI06611.1| ribonuclease III [Streptomyces bingchenggensis BCW-1]
Length = 276
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKK 227
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+
Sbjct: 175 GLDWKTSLQELTATEGLGVPEYLVSETGPDHEKTFTAAARVGGVAYGTGTGRSKKE 230
>gi|222824476|ref|YP_002576050.1| ribonuclease III [Campylobacter lari RM2100]
gi|222539697|gb|ACM64798.1| ribonuclease III [Campylobacter lari RM2100]
Length = 222
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKTK+QE+ P Y + G DH +F+ ++ + G F +++ S KE+Q
Sbjct: 153 YKTKLQEITQANMAGTPEYIVVNAFGPDHKKQFEIAIKIQGKEFARAIAG-SKKEAQQQC 211
Query: 61 AKLAF 65
AK+A
Sbjct: 212 AKIAL 216
>gi|328787042|ref|XP_393745.3| PREDICTED: tRNA-dihydrouridine synthase 2-like [Apis mellifera]
Length = 460
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 84 KSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAK 143
K+VL + + + P Y++ ++G F++ VT+DG + S + KN K AE AA
Sbjct: 383 KTVLHKWTQTQRKKMPNYNTQQKGKL----FRSIVTVDGRKYGSSFWEKNKKWAEQGAAL 438
Query: 144 VALFSLA 150
V LFSL
Sbjct: 439 VCLFSLG 445
>gi|255325275|ref|ZP_05366381.1| ribonuclease III [Corynebacterium tuberculostearicum SK141]
gi|255297840|gb|EET77151.1| ribonuclease III [Corynebacterium tuberculostearicum SK141]
Length = 256
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QELC + + +P YS G +HD F + +V GL+ + V + K ++ AA
Sbjct: 176 WKTTLQELCAELKAPMPVYSATSTGPEHDQTFNAVATVAGLTVGNGVG-HNKKLAEQQAA 234
Query: 62 KLA 64
+ A
Sbjct: 235 QEA 237
>gi|302342152|ref|YP_003806681.1| ribonuclease III [Desulfarculus baarsii DSM 2075]
gi|301638765|gb|ADK84087.1| ribonuclease III [Desulfarculus baarsii DSM 2075]
Length = 237
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKT +QE + PRY T+ + G DHD F S+ +N KS KE++ +A
Sbjct: 165 YKTMLQERVQEDLRLTPRYRTIDESGPDHDKTFSVSIEINDRQLAMGAG-KSKKEAEQNA 223
Query: 61 AKLAFLHFTS 70
A+ ++ +
Sbjct: 224 ARRGLTNWNA 233
>gi|227833427|ref|YP_002835134.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975]
gi|262184417|ref|ZP_06043838.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975]
gi|227454443|gb|ACP33196.1| ribonuclease III [Corynebacterium aurimucosum ATCC 700975]
Length = 256
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSF 44
+KT +QELC + + ++P YS G +HD F + +V GL+
Sbjct: 176 WKTTLQELCAELKAAMPVYSATSTGPEHDQTFNAVATVAGLTV 218
>gi|311739750|ref|ZP_07713585.1| ribonuclease III [Corynebacterium pseudogenitalium ATCC 33035]
gi|311305566|gb|EFQ81634.1| ribonuclease III [Corynebacterium pseudogenitalium ATCC 33035]
Length = 256
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QELC + + +P YS G +HD F + +V GL+ + V + K ++ AA
Sbjct: 176 WKTTLQELCAELKAPMPVYSATSTGPEHDQTFNAVATVAGLTVGNGVG-HNKKLAEQQAA 234
Query: 62 KLA 64
+ A
Sbjct: 235 QEA 237
>gi|302542233|ref|ZP_07294575.1| ribonuclease III [Streptomyces hygroscopicus ATCC 53653]
gi|302459851|gb|EFL22944.1| ribonuclease III [Streptomyces himastatinicus ATCC 53653]
Length = 312
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKK 227
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+
Sbjct: 185 GLDWKTSLQELTATEGLGVPEYLVSETGPDHEKTFTAAARVGGVAYGTGTGRSKKE 240
>gi|68536283|ref|YP_250988.1| ribonuclease III [Corynebacterium jeikeium K411]
gi|90101621|sp|Q4JUY7.1|RNC_CORJK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|68263882|emb|CAI37370.1| ribonuclease III [Corynebacterium jeikeium K411]
Length = 244
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
+K VL E LP+P YE G H TF + V ++ V +G+ G TKK AE AAK
Sbjct: 176 WKTVLLEKLSDMKLPLPTYEVRGEGPEHDKTFYATVTIEDLVTHGE-GHTKKVAEHAAAK 234
Query: 235 VAYTALIER 243
A L ER
Sbjct: 235 QAVQKLNER 243
>gi|217077865|ref|YP_002335583.1| ribonuclease III [Thermosipho africanus TCF52B]
gi|217037720|gb|ACJ76242.1| ribonuclease III [Thermosipho africanus TCF52B]
Length = 159
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 163 HVSMYLWDDGVF-YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKA 221
++ ++ +F YK L E++ +P+Y+T+ FI+ + +DG+++
Sbjct: 78 YIEIFFSGKRIFDYKTKLQEITQDRFKQLPVYDTV----SQKNKFITTLYIDGKIYSKAE 133
Query: 222 GRTKKKAEMKAAKVAYTALIERKL 245
G +KK++E AAK+AY L E +
Sbjct: 134 GFSKKESEKLAAKIAYEKLKEEEF 157
>gi|365839119|ref|ZP_09380367.1| ribonuclease III [Anaeroglobus geminatus F0357]
gi|364565515|gb|EHM43236.1| ribonuclease III [Anaeroglobus geminatus F0357]
Length = 238
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 166 MYLWDDGVF---YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKA 221
+ L D G++ YK EL R+G Y + P H TF V V+GE+ +
Sbjct: 155 LQLVDKGIYGKDYKTYFQELLQRDGAQDIRYRLCREEGPDHNKTFFMEVTVNGEIMGTGS 214
Query: 222 GRTKKKAEMKAAKVAYTAL 240
G+TKK AE A AY AL
Sbjct: 215 GKTKKSAEQHA---AYKAL 230
>gi|326402425|ref|YP_004282506.1| ribonuclease III [Acidiphilium multivorum AIU301]
gi|325049286|dbj|BAJ79624.1| ribonuclease III [Acidiphilium multivorum AIU301]
Length = 221
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 70 SPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSI-REGPAHACSFKARVTIDGHTFESL 128
S PP P K+ LQ YA + P Y + R GP+HA F+ RVT+ G E L
Sbjct: 149 SAPPKDP-------KTALQEYALARGPVLPAYELVERTGPSHAPRFRIRVTVAGRAAEGL 201
Query: 129 EFFKNLKQAEHAAAKVALFSL 149
K ++AE AA+ L L
Sbjct: 202 AGTK--REAEQNAARDLLEQL 220
>gi|198470865|ref|XP_001355419.2| GA11711 [Drosophila pseudoobscura pseudoobscura]
gi|198145657|gb|EAL32477.2| GA11711 [Drosophila pseudoobscura pseudoobscura]
Length = 633
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN + L+ LR GL L + G H P F VEVDG+ + G+ GR+KK A ++AA
Sbjct: 57 KNTVAMLNELRNGLIYKLES--QTGPVHAPLFTISVEVDGQKYMGQ-GRSKKVARIEAAA 113
Query: 235 VAYTALIERK 244
A + I+ K
Sbjct: 114 TALRSFIQFK 123
>gi|156357520|ref|XP_001624265.1| predicted protein [Nematostella vectensis]
gi|156211031|gb|EDO32165.1| predicted protein [Nematostella vectensis]
Length = 118
Score = 39.7 bits (91), Expect = 2.0, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 4 TKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAK 62
+ +QE+C +K+W LP + + D G H +F V+VNG + V + K+++ A
Sbjct: 44 SMLQEICARKKWQLPDFQLIFDHGPPHSKQFLFKVAVNGYEYQPQVVSSNKKQAKAQCAL 103
Query: 63 LAFLHFTSPP 72
A + P
Sbjct: 104 YALKAIGAVP 113
>gi|302383079|ref|YP_003818902.1| ribonuclease III [Brevundimonas subvibrioides ATCC 15264]
gi|302193707|gb|ADL01279.1| ribonuclease III [Brevundimonas subvibrioides ATCC 15264]
Length = 237
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 176 KNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
K+ L E + G P+P Y + G+ H PTF V ++G GR+++ AE K
Sbjct: 169 KSALQEWAQGHGRPLPSYRVASQTGSDHAPTFTVEVSIEGVEPLTAVGRSRQDAE----K 224
Query: 235 VAYTALIERKLIF 247
A TAL++R+ +
Sbjct: 225 AAATALLQREGVI 237
>gi|307205142|gb|EFN83585.1| Double-stranded RNA-specific editase Adar [Harpegnathos saltator]
Length = 661
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 192 LYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE 242
+Y+ + + G H P F V++DG+ + GK GRTKK A+ AA++A +I+
Sbjct: 90 IYKVVGQTGPTHAPIFTIAVQIDGQTYEGK-GRTKKMAKHAAAELALRNIIQ 140
>gi|189219126|ref|YP_001939767.1| Ribonuclease III [Methylacidiphilum infernorum V4]
gi|189185984|gb|ACD83169.1| Ribonuclease III [Methylacidiphilum infernorum V4]
Length = 247
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 176 KNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
K +L E ++G +P+Y + + G H + V +V +G++KK+AE++AAK
Sbjct: 165 KGLLQEFLQKKGTELPIYRIVLESGEAHNKWYEVEVSWKNQVLGKGSGKSKKEAELRAAK 224
Query: 235 VAYTALIERKLIFSLP 250
A+ L+ +++ S P
Sbjct: 225 EAFEKLVSQRVSDSTP 240
>gi|345009585|ref|YP_004811939.1| ribonuclease 3 [Streptomyces violaceusniger Tu 4113]
gi|344035934|gb|AEM81659.1| Ribonuclease 3 [Streptomyces violaceusniger Tu 4113]
Length = 278
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKK 227
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+
Sbjct: 174 GLDWKTSLQELTATEGLGVPEYLVSETGPDHEKTFTAAARVGGVAYGTGTGRSKKE 229
>gi|319649604|ref|ZP_08003760.1| rnc protein [Bacillus sp. 2_A_57_CT2]
gi|317398766|gb|EFV79448.1| rnc protein [Bacillus sp. 2_A_57_CT2]
Length = 246
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 170 DDGVF-----YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGR 223
D G F +K+ L EL R+G Y+ ++ P H F+S V ++G GR
Sbjct: 165 DSGAFSHVMDFKSQLQELVQRDGAGTIEYKILQEKGPAHNREFVSTVSLNGRELGTGTGR 224
Query: 224 TKKKAEMKAAKVAYTAL 240
+KK+AE AA++A L
Sbjct: 225 SKKEAEQHAAQMALEVL 241
>gi|308271416|emb|CBX28024.1| Ribonuclease 3 [uncultured Desulfobacterium sp.]
Length = 220
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
+K+KVQEL + P Y+ +++ G DHD FK +++N L + KS K ++ DA
Sbjct: 144 FKSKVQELVQTGQEIKPAYNVVEESGPDHDKIFKVELTINDL--QTVGYGKSKKLAEQDA 201
Query: 61 AKLAF 65
A AF
Sbjct: 202 ASKAF 206
>gi|195162123|ref|XP_002021905.1| GL14352 [Drosophila persimilis]
gi|194103803|gb|EDW25846.1| GL14352 [Drosophila persimilis]
Length = 619
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN + L+ LR GL L + G H P F VEVDG+ + G+ GR+KK A ++AA
Sbjct: 57 KNTVAMLNELRNGLIYKLES--QTGPVHAPLFTISVEVDGQKYMGQ-GRSKKVARIEAAA 113
Query: 235 VAYTALIERK 244
A + I+ K
Sbjct: 114 TALRSFIQFK 123
>gi|160871765|ref|ZP_02061897.1| ribonuclease III [Rickettsiella grylli]
gi|159120564|gb|EDP45902.1| ribonuclease III [Rickettsiella grylli]
Length = 230
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 84 KSVLQNYARRKNLDSPLYSSIR-EGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
K+ LQ Y + K L P+Y+ + EGPAH SFK I G +++ + ++AE AA
Sbjct: 157 KTQLQEYLQAKKLALPVYTILALEGPAHQQSFKVECQIQGLPHKAIGLGSSRRRAEQKAA 216
Query: 143 KVALFSLA 150
+ L LA
Sbjct: 217 EKILEELA 224
>gi|349604084|gb|AEP99734.1| Double-stranded RNA-binding protein Staufen-like protein 2-like
protein, partial [Equus caballus]
Length = 450
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 132 KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN---VLHELSLREGL 188
K + A H AA AL +L + E + DD K+ ++ E++L+ +
Sbjct: 5 KTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEISLVFEIALKRNM 64
Query: 189 PVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIF 247
PV +E IK G PHM +F++ V V GE G +KK ++ +A A T L E K +
Sbjct: 65 PVS-FEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---ATTVLQELKKLP 119
Query: 248 SLPF 251
LP
Sbjct: 120 PLPV 123
>gi|332296458|ref|YP_004438381.1| ribonuclease 3 [Thermodesulfobium narugense DSM 14796]
gi|332179561|gb|AEE15250.1| Ribonuclease 3 [Thermodesulfobium narugense DSM 14796]
Length = 228
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 176 KNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
K VL EL+ +P Y+ I P H P F + +D + FY G +KK+A+ +AAK
Sbjct: 154 KTVLQELTQSLFGVLPEYKVIDVRGPSHSPIFEVQLSIDNKFFYTATGSSKKQAQSEAAK 213
Query: 235 VAYTAL 240
A L
Sbjct: 214 KALNDL 219
>gi|376285037|ref|YP_005158247.1| ribonuclease III [Corynebacterium diphtheriae 31A]
gi|371578552|gb|AEX42220.1| ribonuclease III [Corynebacterium diphtheriae 31A]
Length = 249
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+ LQ ++L+ P Y+S GP H +F ARV + G T N K AE AAA
Sbjct: 177 WKTTLQERLAERSLEMPTYTSTVTGPEHEQTFTARVAVHG-TVLGTGVGTNKKLAEQAAA 235
Query: 143 KVAL 146
A+
Sbjct: 236 HKAV 239
>gi|381181552|ref|ZP_09890386.1| RNAse III [Treponema saccharophilum DSM 2985]
gi|380766772|gb|EIC00777.1| RNAse III [Treponema saccharophilum DSM 2985]
Length = 249
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK++L E ++ P+YE +K P H F V + G + G++KK+AE AA
Sbjct: 179 YKSLLQEWYQKKYKECPVYELVKKSGPEHDKVFWVTVHLKGASYGPAQGKSKKEAEQNAA 238
Query: 234 KVAYTAL 240
K AY L
Sbjct: 239 KAAYEEL 245
Score = 38.1 bits (87), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YK+ +QE +K P Y +K G +HD F +V + G S+ KS KE++ +A
Sbjct: 179 YKSLLQEWYQKKYKECPVYELVKKSGPEHDKVFWVTVHLKGASY-GPAQGKSKKEAEQNA 237
Query: 61 AKLAFLHFTS 70
AK A+ TS
Sbjct: 238 AKAAYEELTS 247
>gi|373857288|ref|ZP_09600030.1| ribonuclease III [Bacillus sp. 1NLA3E]
gi|372452938|gb|EHP26407.1| ribonuclease III [Bacillus sp. 1NLA3E]
Length = 260
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK+ L EL R+G + Y+ + + G H F+S V + G+ GR+KK+AE AA
Sbjct: 176 YKSQLQELVQRDGTGMIEYKVLHEKGPAHNREFVSRVSLSGDELGTGTGRSKKEAEQHAA 235
Query: 234 KVAYTAL 240
++A L
Sbjct: 236 QMALEKL 242
>gi|375291202|ref|YP_005125742.1| ribonuclease III [Corynebacterium diphtheriae 241]
gi|376246036|ref|YP_005136275.1| ribonuclease III [Corynebacterium diphtheriae HC01]
gi|376293537|ref|YP_005165211.1| ribonuclease III [Corynebacterium diphtheriae HC02]
gi|371580873|gb|AEX44540.1| ribonuclease III [Corynebacterium diphtheriae 241]
gi|372108666|gb|AEX74727.1| ribonuclease III [Corynebacterium diphtheriae HC01]
gi|372110860|gb|AEX76920.1| ribonuclease III [Corynebacterium diphtheriae HC02]
Length = 249
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+ LQ +NL+ P Y+S GP H +F A V + G T N K AE AAA
Sbjct: 177 WKTTLQERLAERNLEMPTYTSTVTGPEHEQTFTAEVAVHG-TVLGTGVGTNKKLAEQAAA 235
Query: 143 KVAL 146
A+
Sbjct: 236 HKAV 239
>gi|432906952|ref|XP_004077608.1| PREDICTED: LOW QUALITY PROTEIN: interferon-induced, double-stranded
RNA-activated protein kinase [Oryzias latipes]
Length = 900
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 197 KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
KCGAPH F V +DG+ + G T K+A+ AA++A +AL
Sbjct: 481 KCGAPHALKFSYKVMIDGQEYPTGEGNTAKEAKQNAARMALSAL 524
>gi|414173889|ref|ZP_11428516.1| ribonuclease 3 [Afipia broomeae ATCC 49717]
gi|410890523|gb|EKS38322.1| ribonuclease 3 [Afipia broomeae ATCC 49717]
Length = 268
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 176 KNVLHELSLREGLPVPLYETIKCGAPHM-PTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
K +L E + +GLP P+Y ++ PH P F VE+ G G +K+ AE K
Sbjct: 195 KTILQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVELPGLTPAEGVGGSKRAAE----K 250
Query: 235 VAYTALIERKLI 246
+A TAL++R+ +
Sbjct: 251 LAATALLKREGV 262
>gi|408828137|ref|ZP_11213027.1| ribonuclease III [Streptomyces somaliensis DSM 40738]
Length = 257
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKK 227
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+
Sbjct: 135 GLDWKTSLQELTAAEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKE 190
>gi|376290735|ref|YP_005162982.1| ribonuclease III [Corynebacterium diphtheriae C7 (beta)]
gi|372104131|gb|AEX67728.1| ribonuclease III [Corynebacterium diphtheriae C7 (beta)]
Length = 249
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+ LQ +NL+ P Y+S GP H +F A V + G T N K AE AAA
Sbjct: 177 WKTTLQERLAERNLEMPTYTSTVTGPEHEQTFTAEVAVHG-TVLGTGVGTNKKLAEQAAA 235
Query: 143 KVAL 146
A+
Sbjct: 236 HKAV 239
>gi|193627224|ref|XP_001952647.1| PREDICTED: hypothetical protein LOC100161769 [Acyrthosiphon pisum]
Length = 732
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 6 VQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAK 62
+ E C +++W +P+++T+ + G H F +V VNG+ + SS C++ K ++ +AAK
Sbjct: 662 LNEFCAKRKWDIPKFNTLDESGPSHRKTFIMTVVVNGVQYCSS-RCQTKKLAKMEAAK 718
>gi|189241606|ref|XP_972567.2| PREDICTED: similar to adenosine deaminase [Tribolium castaneum]
gi|270000868|gb|EEZ97315.1| hypothetical protein TcasGA2_TC011126 [Tribolium castaneum]
Length = 850
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 103/240 (42%), Gaps = 32/240 (13%)
Query: 5 KVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKL 63
K E+ S+ +Y+ +++ G H P FK +V VN ++ K +++++D ++
Sbjct: 96 KTSEISIDDLKSVLKYTLVEEIGPSHAPTFKMAVKVNEKIYYGKGGSK--QKARDDVTQI 153
Query: 64 AFLHFTSPPPPP--------PPNVQCRYKSVLQNYARRKNLDSPLYSSIRE--GPAHACS 113
+ + P P NV + +N + + L L ++ E GP+HA +
Sbjct: 154 VYNSISKNKVKPTIKDEKNEPRNVIIDLSKLKKN--KLEYLKPLLKFTLIEQIGPSHAPT 211
Query: 114 FKARVTIDGHTFESLEFFKN---LKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWD 170
FK ++G + F N ++A+ + + L SL + + M +
Sbjct: 212 FKMAAKVNGKLY-----FGNGGSKQKAQTSVTQSVLQSLNQKLINDNLINVQIEPMTVKT 266
Query: 171 DGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEM 230
D + +N L R L E + G H PTF +V+ +++YG G +K KA+M
Sbjct: 267 DPKYVENTYSLLKYR------LVE--QTGPDHKPTFKMAAKVNEKIYYGVGG-SKVKAQM 317
>gi|156401537|ref|XP_001639347.1| predicted protein [Nematostella vectensis]
gi|156226475|gb|EDO47284.1| predicted protein [Nematostella vectensis]
Length = 880
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
YK ++QE C + + P Y + K D +F + V+G +F + C++ K S+ AA
Sbjct: 810 YKNQLQEYCDKNKKGAPIYDSKKVELQVDGKFVCDLLVDGFTFRAK-GCQTKKGSEQSAA 868
Query: 62 KLAFLHF 68
++A F
Sbjct: 869 RIALQRF 875
>gi|149173983|ref|ZP_01852611.1| ribonuclease III [Planctomyces maris DSM 8797]
gi|148846963|gb|EDL61298.1| ribonuclease III [Planctomyces maris DSM 8797]
Length = 247
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
YKS+LQ Y+++K +P+Y + E GP H+ FK I H +E + K+AE A
Sbjct: 166 YKSLLQQYSQKKFSQTPIYEVLDEKGPDHSKFFKVTAIIGEHKYEPA-WGSTKKEAEQRA 224
Query: 142 AKVAL 146
A AL
Sbjct: 225 AYNAL 229
Score = 37.7 bits (86), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKA-GRTKKKAEM 230
G YK++L + S ++ P+YE + P F + + GE Y A G TKK+AE
Sbjct: 163 GYNYKSLLQQYSQKKFSQTPIYEVLDEKGPDHSKFFKVTAIIGEHKYEPAWGSTKKEAEQ 222
Query: 231 KAAKVAYTALIERK 244
+A AY AL E +
Sbjct: 223 RA---AYNALRENE 233
>gi|443322124|ref|ZP_21051157.1| ribonuclease III [Gloeocapsa sp. PCC 73106]
gi|442788177|gb|ELR97877.1| ribonuclease III [Gloeocapsa sp. PCC 73106]
Length = 227
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 176 KNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN+L + ++ P YE I + G PH TF + V + G+V+ GR K++AE +AA
Sbjct: 158 KNLLQQWAIVNLGENPSYELIAEFGPPHAKTFTTQVHIQGKVYGVGQGRKKQEAEKQAAL 217
Query: 235 VAYTAL 240
A L
Sbjct: 218 AALQRL 223
>gi|61218669|sp|Q9NII1.2|ADAR_DROME RecName: Full=Double-stranded RNA-specific editase Adar; AltName:
Full=Adenosine deaminase that act on RNA; AltName:
Full=Pre-mRNA adenosine deaminase; AltName:
Full=RNA-editing deaminase 1; AltName: Full=RNA-editing
enzyme 1; AltName: Full=dADAR; AltName: Full=dsRNA
adenosine deaminase
Length = 676
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN + L+ LR GL L + G H P F VEVDG+ + G+ GR+KK A ++AA
Sbjct: 63 KNTVAMLNELRHGLIYKLES--QTGPVHAPLFTISVEVDGQKYLGQ-GRSKKVARIEAAA 119
Query: 235 VAYTALIERK 244
A + I+ K
Sbjct: 120 TALRSFIQFK 129
>gi|432912051|ref|XP_004078843.1| PREDICTED: double-stranded RNA-specific editase B2-like [Oryzias
latipes]
Length = 776
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 173 VFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L + L E P YE + K G H P F VEV+G F G G TKK+A+M+
Sbjct: 152 VTQKNAL--VHLNELKPGLRYEIMSKSGPLHAPVFSVGVEVNGFHFEG-FGSTKKQAKMR 208
Query: 232 AAKVAYTALIE 242
AA++A + I+
Sbjct: 209 AAELALQSFIQ 219
>gi|7546826|gb|AAF63702.1| alternative double-stranded RNA-specific adenosine deaminase b
[Drosophila melanogaster]
Length = 669
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN + L+ LR GL L + G H P F VEVDG+ + G+ GR+KK A ++AA
Sbjct: 56 KNTVAMLNELRHGLIYKLES--QTGPVHAPLFTISVEVDGQKYLGQ-GRSKKVARIEAAA 112
Query: 235 VAYTALIERK 244
A + I+ K
Sbjct: 113 TALRSFIQFK 122
>gi|38234119|ref|NP_939886.1| ribonuclease III [Corynebacterium diphtheriae NCTC 13129]
gi|375293404|ref|YP_005127943.1| ribonuclease III [Corynebacterium diphtheriae INCA 402]
gi|376257435|ref|YP_005145326.1| ribonuclease III [Corynebacterium diphtheriae VA01]
gi|419861105|ref|ZP_14383743.1| ribonuclease III [Corynebacterium diphtheriae bv. intermedius str.
NCTC 5011]
gi|81564732|sp|Q6NGH3.1|RNC_CORDI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|38200381|emb|CAE50069.1| ribonuclease III [Corynebacterium diphtheriae]
gi|371583075|gb|AEX46741.1| ribonuclease III [Corynebacterium diphtheriae INCA 402]
gi|372119952|gb|AEX83686.1| ribonuclease III [Corynebacterium diphtheriae VA01]
gi|387982174|gb|EIK55681.1| ribonuclease III [Corynebacterium diphtheriae bv. intermedius str.
NCTC 5011]
Length = 249
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+ LQ +NL+ P Y+S GP H +F A V + G T N K AE AAA
Sbjct: 177 WKTTLQERLAERNLEMPTYTSTVTGPEHEQTFTAEVAVHG-TVLGTGVGTNKKLAEQAAA 235
Query: 143 KVAL 146
A+
Sbjct: 236 HKAV 239
>gi|380016047|ref|XP_003692004.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like [Apis
florea]
Length = 460
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 84 KSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAK 143
K++L + + + P Y++ ++G F++ VT+DG + S + KN K AE AA
Sbjct: 383 KTILHKWTQTQRKKMPNYNTQQKGKL----FRSIVTVDGRKYGSSFWEKNKKWAEQGAAL 438
Query: 144 VALFSLA 150
V LFSL
Sbjct: 439 VCLFSLG 445
>gi|393910119|gb|EJD75745.1| G-patch domain-containing protein [Loa loa]
Length = 1045
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 6 VQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAF 65
+ ELC +KRW P+++ ++ G ++ RF VNG+ + S S K + A ++
Sbjct: 970 LMELCSKKRWHAPQFTCLESGPSNNRRFLWKAVVNGVEYQPSTPSTSKKTGKAQACQVVL 1029
Query: 66 LHFTSPPPPP 75
P P
Sbjct: 1030 QSLGLVPRDP 1039
>gi|376288050|ref|YP_005160616.1| ribonuclease III [Corynebacterium diphtheriae BH8]
gi|371585384|gb|AEX49049.1| ribonuclease III [Corynebacterium diphtheriae BH8]
Length = 249
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+ LQ +NL+ P Y+S GP H +F A V + G T N K AE AAA
Sbjct: 177 WKTTLQERLAERNLEMPTYTSTVTGPEHEQTFTAEVAVHG-TVLGTGVGTNKKLAEQAAA 235
Query: 143 KVAL 146
A+
Sbjct: 236 HKAV 239
>gi|195403581|ref|XP_002060356.1| GJ18414 [Drosophila virilis]
gi|194147402|gb|EDW63114.1| GJ18414 [Drosophila virilis]
Length = 633
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN + L+ LR GL L + G H P F VEVDG+ + G+ GR+KK A ++AA
Sbjct: 57 KNTVAMLNELRHGLIYKLES--QTGPVHAPLFTISVEVDGQKYMGQ-GRSKKVARIEAAA 113
Query: 235 VAYTALIERK 244
A + I+ K
Sbjct: 114 TALRSFIQFK 123
>gi|431806036|ref|YP_007232937.1| Ribonuclease III [Liberibacter crescens BT-1]
gi|430800011|gb|AGA64682.1| Ribonuclease III [Liberibacter crescens BT-1]
Length = 240
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 3 KTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
KT++QE H K P+Y + G DHDPRF +V + G+ ++C Q AA
Sbjct: 164 KTELQEWAHAKFGVTPKYKVDSRSGPDHDPRFTVTVEIPGIDPGVGINCSKRAAEQIAAA 223
Query: 62 KL 63
+
Sbjct: 224 DI 225
>gi|100271817|gb|ABF69310.1| ribonuclease III [Ehrlichia ruminantium]
Length = 137
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 176 KNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
K +L E + +G P P Y I K G H P F V +D G KK AE KAA
Sbjct: 67 KTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRIDSHETLHATGHNKKPAEQKAAS 126
Query: 235 V 235
+
Sbjct: 127 L 127
>gi|195469794|ref|XP_002099821.1| GE16707 [Drosophila yakuba]
gi|194187345|gb|EDX00929.1| GE16707 [Drosophila yakuba]
Length = 632
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN + L+ LR GL L + G H P F VEVDG+ + G+ GR+KK A ++AA
Sbjct: 56 KNTVAMLNELRHGLIYKLES--QTGPVHAPLFTISVEVDGQKYLGQ-GRSKKVARIEAAA 112
Query: 235 VAYTALIERK 244
A + I+ K
Sbjct: 113 TALRSFIQFK 122
>gi|379737165|ref|YP_005330671.1| ribonuclease 3 [Blastococcus saxobsidens DD2]
gi|378784972|emb|CCG04643.1| Ribonuclease 3 [Blastococcus saxobsidens DD2]
Length = 261
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL +GL P Y+ G H TF + V + G V +GRTKK AE +
Sbjct: 190 GLDWKTSLQELGAAQGLGAPTYQVDDEGPDHAKTFTAAVLLAGIVRGTGSGRTKKAAEQE 249
Query: 232 AAKVAYTALIE 242
AA++A+ AL E
Sbjct: 250 AAEIAWRALSE 260
>gi|194912620|ref|XP_001982542.1| GG12877 [Drosophila erecta]
gi|190648218|gb|EDV45511.1| GG12877 [Drosophila erecta]
Length = 632
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN + L+ LR GL L + G H P F VEVDG+ + G+ GR+KK A ++AA
Sbjct: 56 KNTVAMLNELRHGLIYKLES--QTGPVHAPLFTISVEVDGQKYLGQ-GRSKKVARIEAAA 112
Query: 235 VAYTALIERK 244
A + I+ K
Sbjct: 113 TALRSFIQFK 122
>gi|424891048|ref|ZP_18314647.1| ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM2012]
gi|393173266|gb|EJC73311.1| ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM2012]
Length = 239
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 3 KTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
KT++QE H K P Y + G DHDPRFK +V V G+ + V Q A
Sbjct: 164 KTELQEWSHAKFGVTPNYRVDERSGPDHDPRFKVTVEVAGIKPETGVERSKRAAEQVAAT 223
Query: 62 KL 63
K+
Sbjct: 224 KM 225
>gi|296117605|ref|ZP_06836189.1| ribonuclease III [Corynebacterium ammoniagenes DSM 20306]
gi|295969336|gb|EFG82577.1| ribonuclease III [Corynebacterium ammoniagenes DSM 20306]
Length = 244
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNG 41
+KT +QELC +++ P YS G +HD F + V V+G
Sbjct: 176 WKTTLQELCAERKLPTPDYSATSTGPEHDQLFTAQVHVDG 215
>gi|386763622|ref|NP_001245471.1| adenosine deaminase acting on RNA, isoform K [Drosophila
melanogaster]
gi|386763630|ref|NP_001245475.1| adenosine deaminase acting on RNA, isoform D [Drosophila
melanogaster]
gi|240268596|gb|ACS52172.1| ADARe2 [Drosophila melanogaster]
gi|260166757|gb|ACX32990.1| LD32961p [Drosophila melanogaster]
gi|383293143|gb|AFH07185.1| adenosine deaminase acting on RNA, isoform K [Drosophila
melanogaster]
gi|383293147|gb|AFH07189.1| adenosine deaminase acting on RNA, isoform D [Drosophila
melanogaster]
Length = 392
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN + L+ LR GL L + G H P F VEVDG+ + G+ GR+KK A ++AA
Sbjct: 56 KNTVAMLNELRHGLIYKLES--QTGPVHAPLFTISVEVDGQKYLGQ-GRSKKVARIEAAA 112
Query: 235 VAYTALIERK 244
A + I+ K
Sbjct: 113 TALRSFIQFK 122
>gi|153005020|ref|YP_001379345.1| ribonuclease III [Anaeromyxobacter sp. Fw109-5]
gi|152028593|gb|ABS26361.1| Ribonuclease III [Anaeromyxobacter sp. Fw109-5]
Length = 377
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
+K L EL+ P Y + + G H TF E+ GEV GR+KK AE AA
Sbjct: 175 FKTQLQELAQSRVRATPRYRVVGEHGPDHSKTFEVETELRGEVVGRGTGRSKKDAEQAAA 234
Query: 234 KVAYTALIER 243
K+ L+ R
Sbjct: 235 KIGLDLLLRR 244
>gi|24639162|ref|NP_569940.2| adenosine deaminase acting on RNA, isoform A [Drosophila
melanogaster]
gi|386763618|ref|NP_001245469.1| adenosine deaminase acting on RNA, isoform I [Drosophila
melanogaster]
gi|13448047|gb|AAK26850.1| pre-mRNA adenosine deaminase [Drosophila melanogaster]
gi|22831515|gb|AAF45665.2| adenosine deaminase acting on RNA, isoform A [Drosophila
melanogaster]
gi|383293141|gb|AFH07183.1| adenosine deaminase acting on RNA, isoform I [Drosophila
melanogaster]
Length = 632
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN + L+ LR GL L + G H P F VEVDG+ + G+ GR+KK A ++AA
Sbjct: 56 KNTVAMLNELRHGLIYKLES--QTGPVHAPLFTISVEVDGQKYLGQ-GRSKKVARIEAAA 112
Query: 235 VAYTALIERK 244
A + I+ K
Sbjct: 113 TALRSFIQFK 122
>gi|386763628|ref|NP_001245474.1| adenosine deaminase acting on RNA, isoform H [Drosophila
melanogaster]
gi|383293146|gb|AFH07188.1| adenosine deaminase acting on RNA, isoform H [Drosophila
melanogaster]
Length = 665
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN + L+ LR GL L + G H P F VEVDG+ + G+ GR+KK A ++AA
Sbjct: 52 KNTVAMLNELRHGLIYKLES--QTGPVHAPLFTISVEVDGQKYLGQ-GRSKKVARIEAAA 108
Query: 235 VAYTALIERK 244
A + I+ K
Sbjct: 109 TALRSFIQFK 118
>gi|291277478|ref|YP_003517250.1| ribonuclease III [Helicobacter mustelae 12198]
gi|290964672|emb|CBG40527.1| ribonuclease III [Helicobacter mustelae 12198]
Length = 223
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKT +QEL +P+Y +++ G DH +FK SV + + ++ S K +Q +
Sbjct: 152 YKTALQELTQAHFHEIPKYELLEEIGPDHCKKFKVSVYIQNQEYAKAIGT-SKKSAQQNC 210
Query: 61 AKLAF 65
AK+A+
Sbjct: 211 AKIAY 215
Score = 38.1 bits (87), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK L EL+ +P YE ++ G H F V + + + G +KK A+ A
Sbjct: 152 YKTALQELTQAHFHEIPKYELLEEIGPDHCKKFKVSVYIQNQEYAKAIGTSKKSAQQNCA 211
Query: 234 KVAYTALIERK 244
K+AY ++E+K
Sbjct: 212 KIAYQKIMEQK 222
>gi|195133919|ref|XP_002011386.1| GI16028 [Drosophila mojavensis]
gi|193907361|gb|EDW06228.1| GI16028 [Drosophila mojavensis]
Length = 633
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN + L+ LR GL L + G H P F VEVDG+ + G+ GR+KK A ++AA
Sbjct: 57 KNTVAMLNELRHGLIYKLES--QTGPVHAPLFTISVEVDGQKYMGQ-GRSKKVARIEAAA 113
Query: 235 VAYTALIERK 244
A + I+ K
Sbjct: 114 TALRSFIQFK 123
>gi|350415252|ref|XP_003490582.1| PREDICTED: double-stranded RNA-specific editase Adar-like [Bombus
impatiens]
Length = 663
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 197 KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE 242
+ G H P F V++DG+ + GK GRTKK A+ AA++A +I+
Sbjct: 98 QTGPTHAPIFTIAVQIDGQTYEGK-GRTKKMAKHAAAELALRNIIQ 142
>gi|4164311|emb|CAA22774.1| EG:BACN35H14.1 [Drosophila melanogaster]
Length = 653
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN + L+ LR GL L + G H P F VEVDG+ + G+ GR+KK A ++AA
Sbjct: 56 KNTVAMLNELRHGLIYKLES--QTGPVHAPLFTISVEVDGQKYLGQ-GRSKKVARIEAAA 112
Query: 235 VAYTALIERK 244
A + I+ K
Sbjct: 113 TALRSFIQFK 122
>gi|7546827|gb|AAF63703.1| double-stranded RNA-specific adenosine deaminase a [Drosophila
melanogaster]
Length = 632
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN + L+ LR GL L + G H P F VEVDG+ + G+ GR+KK A ++AA
Sbjct: 56 KNTVAMLNELRHGLIYKLES--QTGPVHAPLFTISVEVDGQKYLGQ-GRSKKVARIEAAA 112
Query: 235 VAYTALIERK 244
A + I+ K
Sbjct: 113 TALRSFIQFK 122
>gi|403667654|ref|ZP_10932954.1| ribonuclease 3 [Kurthia sp. JC8E]
Length = 248
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 160 LYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFY 218
++ V + ++ D + +K+ L EL + Y +K P H TF+S V ++ V
Sbjct: 162 VFPKVELGMFSDVMDFKSQLQELVQQTSSGSLQYAIVKENGPAHKRTFVSQVILNDVVIS 221
Query: 219 GKAGRTKKKAEMKAAKVAYTALIERK 244
G++KK+AE KAA++A L +K
Sbjct: 222 EGHGKSKKEAEQKAAQIAIHTLTNKK 247
>gi|209548601|ref|YP_002280518.1| ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|424894359|ref|ZP_18317933.1| ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|424914791|ref|ZP_18338155.1| ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM597]
gi|226741375|sp|B5ZW73.1|RNC_RHILW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|209534357|gb|ACI54292.1| Ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|392850967|gb|EJB03488.1| ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM597]
gi|393178586|gb|EJC78625.1| ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM2297]
Length = 239
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 3 KTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
KT++QE H K P Y + G DHDPRFK +V V G+ + V Q A
Sbjct: 164 KTELQEWSHAKFGVTPNYRVDERSGPDHDPRFKVTVEVAGIKPETGVERSKRAAEQVAAT 223
Query: 62 KL 63
K+
Sbjct: 224 KM 225
>gi|386760965|ref|YP_006234600.1| ribonuclease III [Helicobacter cinaedi PAGU611]
gi|385145981|dbj|BAM11489.1| ribonuclease III [Helicobacter cinaedi PAGU611]
Length = 242
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKT +QEL +P Y+ + + G DH F+ ++SVNG+ + + S K++Q +
Sbjct: 161 YKTALQELTQAIFGEIPTYTLVSESGPDHQKSFEIALSVNGVEY-ARAKGSSKKDAQQKS 219
Query: 61 AKLAF 65
A++A+
Sbjct: 220 AQIAY 224
>gi|254693019|gb|ACT79359.1| RE17094p [Drosophila melanogaster]
Length = 392
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN + L+ LR GL L + G H P F VEVDG+ + G+ GR+KK A ++AA
Sbjct: 56 KNTVAMLNELRHGLIYKLES--QTGPVHAPLFTISVEVDGQKYLGQ-GRSKKVARIEAAA 112
Query: 235 VAYTALIERK 244
A + I+ K
Sbjct: 113 TALRSFIQFK 122
>gi|195434256|ref|XP_002065119.1| GK14845 [Drosophila willistoni]
gi|194161204|gb|EDW76105.1| GK14845 [Drosophila willistoni]
Length = 512
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 9/77 (11%)
Query: 178 VLHELSLREGLPVPLYETIKC-GAPHMPTF---ISMVEVDGEVFYGKAGRTKKKAEMKAA 233
+L EL R G+ P YE ++ GA H PTF +S + D AGR+KK+A+ AA
Sbjct: 181 ILQELLSRRGI-TPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAA 239
Query: 234 KVAYTALIERKLIFSLP 250
+ ALI++ ++ LP
Sbjct: 240 R----ALIDKLIVVQLP 252
>gi|195347707|ref|XP_002040393.1| GM19166 [Drosophila sechellia]
gi|194121821|gb|EDW43864.1| GM19166 [Drosophila sechellia]
Length = 602
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN + L+ LR GL L + G H P F VEVD + +YG+ GR+KK A ++AA
Sbjct: 52 KNTVGMLNELRHGLIYKLES--QTGPVHAPLFTISVEVDDQKYYGQ-GRSKKIARIEAAA 108
Query: 235 VAYTALIERK 244
A + I+ K
Sbjct: 109 TALRSFIQFK 118
>gi|414341280|ref|YP_006982801.1| ribonuclease 3 [Gluconobacter oxydans H24]
gi|411026615|gb|AFV99869.1| ribonuclease 3 [Gluconobacter oxydans H24]
gi|453330555|dbj|GAC87301.1| ribonuclease III [Gluconobacter thailandicus NBRC 3255]
Length = 244
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 176 KNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
K +L E L +GLP+P YE + P H P F V+ G G+AG +K+ AE AA
Sbjct: 174 KTLLQEYLLSQGLPLPKYELLAAEGPSHAPVFRVAVQARGLTGRGEAG-SKRVAESAAA 231
>gi|386763632|ref|NP_001245476.1| adenosine deaminase acting on RNA, isoform E [Drosophila
melanogaster]
gi|383293148|gb|AFH07190.1| adenosine deaminase acting on RNA, isoform E [Drosophila
melanogaster]
Length = 634
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN + L+ LR GL L + G H P F VEVDG+ + G+ GR+KK A ++AA
Sbjct: 58 KNTVAMLNELRHGLIYKLES--QTGPVHAPLFTISVEVDGQKYLGQ-GRSKKVARIEAAA 114
Query: 235 VAYTALIERK 244
A + I+ K
Sbjct: 115 TALRSFIQFK 124
>gi|307179783|gb|EFN67973.1| Double-stranded RNA-specific editase Adar [Camponotus floridanus]
Length = 1657
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 197 KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE 242
+ G H P F V++DG+ + GK GRTKK A+ AA++A +I+
Sbjct: 1094 QTGPTHAPIFTIAVQIDGQTYEGK-GRTKKMAKHAAAELALRNIIQ 1138
>gi|313144833|ref|ZP_07807026.1| ribonuclease 3 [Helicobacter cinaedi CCUG 18818]
gi|313129864|gb|EFR47481.1| ribonuclease 3 [Helicobacter cinaedi CCUG 18818]
gi|396078041|dbj|BAM31417.1| ribonuclease III [Helicobacter cinaedi ATCC BAA-847]
Length = 242
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKT +QEL +P Y+ + + G DH F+ ++SVNG+ + + S K++Q +
Sbjct: 161 YKTALQELTQAIFGEIPTYTLVSESGPDHQKSFEIALSVNGVEY-ARAKGSSKKDAQQKS 219
Query: 61 AKLAF 65
A++A+
Sbjct: 220 AQIAY 224
>gi|340725561|ref|XP_003401137.1| PREDICTED: double-stranded RNA-specific editase Adar-like [Bombus
terrestris]
Length = 663
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 197 KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE 242
+ G H P F V++DG+ + GK GRTKK A+ AA++A +I+
Sbjct: 98 QTGPTHAPIFTIAVQIDGQTYEGK-GRTKKMAKHAAAELALRNIIQ 142
>gi|45551201|ref|NP_726761.2| adenosine deaminase acting on RNA, isoform B [Drosophila
melanogaster]
gi|45446775|gb|AAN09057.2| adenosine deaminase acting on RNA, isoform B [Drosophila
melanogaster]
Length = 628
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN + L+ LR GL L + G H P F VEVDG+ + G+ GR+KK A ++AA
Sbjct: 52 KNTVAMLNELRHGLIYKLES--QTGPVHAPLFTISVEVDGQKYLGQ-GRSKKVARIEAAA 108
Query: 235 VAYTALIERK 244
A + I+ K
Sbjct: 109 TALRSFIQFK 118
>gi|386813044|ref|ZP_10100269.1| ribonuclease III rncS [planctomycete KSU-1]
gi|386405314|dbj|GAB63150.1| ribonuclease III rncS [planctomycete KSU-1]
Length = 250
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 82 RYKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHA 140
YKS+LQ Y++++ +P Y +++ GP H SF+ V I G+ + + K+ K+AE +
Sbjct: 161 NYKSILQQYSQKEYGVTPSYRVLQQIGPDHGKSFEVIVLIKGNEY-GRGWGKSKKEAEQS 219
Query: 141 AAKVAL 146
AAK L
Sbjct: 220 AAKETL 225
>gi|351702783|gb|EHB05702.1| Double-stranded RNA-specific editase B2 [Heterocephalus glaber]
Length = 805
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 176 KNVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L L+ GL + + G H P F VEV+G F G G TKKKA+M AA+
Sbjct: 187 KNALVQLHELKPGLQYRMVS--QTGPVHAPVFAVAVEVNGFTFEG-TGPTKKKAKMHAAE 243
Query: 235 VAYTALIE 242
+A + ++
Sbjct: 244 LALKSFVQ 251
>gi|410943088|ref|ZP_11374829.1| ribonuclease III [Gluconobacter frateurii NBRC 101659]
Length = 244
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 176 KNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
K +L E L +GLP+P YE + P H P F V+ G G+AG +K+ AE AA
Sbjct: 174 KTLLQEYLLSQGLPLPKYELLAAEGPSHAPVFRVAVQARGLTGRGEAG-SKRVAESAAA 231
>gi|383456226|ref|YP_005370215.1| ribonuclease III [Corallococcus coralloides DSM 2259]
gi|380734172|gb|AFE10174.1| ribonuclease III [Corallococcus coralloides DSM 2259]
Length = 260
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
YK++LQ A K SP Y + E GP HA F+ V I G + + +N K+AE AA
Sbjct: 167 YKTLLQELAHEKLKLSPRYRVVAETGPEHAKVFEVEVCI-GESVYARATGRNKKEAEQAA 225
Query: 142 AKVALFSLACD 152
A+ L L +
Sbjct: 226 ARTTLERLKAE 236
>gi|268680594|ref|YP_003305025.1| ribonuclease III [Sulfurospirillum deleyianum DSM 6946]
gi|268618625|gb|ACZ12990.1| ribonuclease III [Sulfurospirillum deleyianum DSM 6946]
Length = 227
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
+KT +QEL P Y ++ G DH F+ +VSV G S S S KS KE+Q A
Sbjct: 156 HKTTLQELTQAHFGVTPEYRLVRSFGPDHQKEFEIAVSVRG-SDLSLASGKSKKEAQQKA 214
Query: 61 AKLAF 65
A LA
Sbjct: 215 ALLAL 219
>gi|195454350|ref|XP_002074202.1| GK12745 [Drosophila willistoni]
gi|194170287|gb|EDW85188.1| GK12745 [Drosophila willistoni]
Length = 845
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 6 VQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLA 64
+ EL + +W+ P+Y ++ G H F SV +NG + S C S KE++ +AAKL
Sbjct: 776 LNELTSKNKWTPPQYVLQQNTGPAHMRTFLFSVEINGQKYTPSNGCNSKKEAKLNAAKLC 835
Query: 65 FLHFTSPPP 73
PP
Sbjct: 836 LQALGLLPP 844
>gi|383858469|ref|XP_003704724.1| PREDICTED: double-stranded RNA-specific editase Adar-like
[Megachile rotundata]
Length = 621
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 197 KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE 242
+ G H P F V++DG+ + GK GRTKK A+ AA++A +I+
Sbjct: 55 QTGPTHAPIFTIAVQIDGQTYEGK-GRTKKMAKHAAAELALRNIIQ 99
>gi|334118125|ref|ZP_08492215.1| Ribonuclease 3 [Microcoleus vaginatus FGP-2]
gi|333460110|gb|EGK88720.1| Ribonuclease 3 [Microcoleus vaginatus FGP-2]
Length = 237
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 191 PLYETIKCGA-PHMPTFISMVEVDGEVFYGKA-GRTKKKAEMKAAKVAYTALIERKLI 246
P Y T++ G PH P F++ V V E YG+ G++KK AE AA+ A L +R LI
Sbjct: 181 PKYVTVQAGGTPHKPEFLAKVYV-AEKLYGEGKGKSKKDAEKNAAEDALAKLKKRGLI 237
>gi|386763620|ref|NP_001245470.1| adenosine deaminase acting on RNA, isoform J [Drosophila
melanogaster]
gi|383293142|gb|AFH07184.1| adenosine deaminase acting on RNA, isoform J [Drosophila
melanogaster]
Length = 389
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN + L+ LR GL L + G H P F VEVDG+ + G+ GR+KK A ++AA
Sbjct: 53 KNTVAMLNELRHGLIYKLES--QTGPVHAPLFTISVEVDGQKYLGQ-GRSKKVARIEAAA 109
Query: 235 VAYTALIERK 244
A + I+ K
Sbjct: 110 TALRSFIQFK 119
>gi|240268594|gb|ACS52171.1| ADARe1 [Drosophila melanogaster]
Length = 355
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN + L+ LR GL L + G H P F VEVDG+ + G+ GR+KK A ++AA
Sbjct: 56 KNTVAMLNELRHGLIYKLES--QTGPVHAPLFTISVEVDGQKYLGQ-GRSKKVARIEAAA 112
Query: 235 VAYTALIERK 244
A + I+ K
Sbjct: 113 TALRSFIQFK 122
>gi|386763634|ref|NP_001245477.1| adenosine deaminase acting on RNA, isoform F [Drosophila
melanogaster]
gi|383293149|gb|AFH07191.1| adenosine deaminase acting on RNA, isoform F [Drosophila
melanogaster]
Length = 611
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN + L+ LR GL L + G H P F VEVDG+ + G+ GR+KK A ++AA
Sbjct: 35 KNTVAMLNELRHGLIYKLES--QTGPVHAPLFTISVEVDGQKYLGQ-GRSKKVARIEAAA 91
Query: 235 VAYTALIERK 244
A + I+ K
Sbjct: 92 TALRSFIQFK 101
>gi|348527040|ref|XP_003451027.1| PREDICTED: LOW QUALITY PROTEIN: double-stranded RNA-specific
adenosine deaminase-like [Oreochromis niloticus]
Length = 1336
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 177 NVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
+VL E S R G P+ T + G PH P F+ V+V +F + KK A AA+ A
Sbjct: 722 SVLMEYSQRSGKPIEFINTGQAGPPHDPRFMYRVKVGESLFAEASAPNKKAARQLAAEEA 781
Query: 237 YTALI-ERKLIFSLP 250
L+ + KL + P
Sbjct: 782 VKELMADGKLQLNKP 796
>gi|384515974|ref|YP_005711066.1| ribonuclease III [Corynebacterium ulcerans 809]
gi|397654323|ref|YP_006495006.1| ribonuclease III [Corynebacterium ulcerans 0102]
gi|334697175|gb|AEG81972.1| ribonuclease III [Corynebacterium ulcerans 809]
gi|393403279|dbj|BAM27771.1| ribonuclease III [Corynebacterium ulcerans 0102]
Length = 249
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 154 FQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVD 213
FQ+ I + V M+ D +K L E + LPVP+YE G H TF ++V V
Sbjct: 161 FQKKIDTASAVGMH--QD---WKTTLQERAAERKLPVPVYEASSTGPEHSQTFTAVVTVG 215
Query: 214 GEVFYGKAGRTKKKAEMKAAKVAYTALIE 242
G KK AE AA A L E
Sbjct: 216 TTALGEGVGPNKKLAEQAAAHKAVVFLQE 244
>gi|94469430|gb|ABF20205.1| ribonuclease III [Ehrlichia ruminantium]
gi|100271805|gb|ABF69302.1| ribonuclease III [Ehrlichia ruminantium]
gi|100271811|gb|ABF69306.1| ribonuclease III [Ehrlichia ruminantium]
gi|100271844|gb|ABF69328.1| ribonuclease III [Ehrlichia ruminantium]
Length = 137
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 176 KNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
K +L E + +G P P Y I K G H P F V +D G KK AE KAA
Sbjct: 67 KTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRIDSHETLHATGHNKKLAEQKAAS 126
Query: 235 V 235
+
Sbjct: 127 L 127
>gi|251797476|ref|YP_003012207.1| ribonuclease III [Paenibacillus sp. JDR-2]
gi|247545102|gb|ACT02121.1| ribonuclease III [Paenibacillus sp. JDR-2]
Length = 231
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 159 FLYAHVSMYLW--DDGVF---YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEV 212
FL H+ Y+ D G+ +K+ L E + +GL Y ++ P H F+ V +
Sbjct: 142 FLETHMFPYIESNDYGLLVKDFKSKLQERAQHKGLGAVEYRIMEERGPAHDREFVVEVCI 201
Query: 213 DGEVFYGK-AGRTKKKAEMKAAKVAYTALIE 242
GE+ YG +GRTKK+AE +AA VA+ +L E
Sbjct: 202 -GEIPYGNGSGRTKKEAEQRAAAVAWQSLTE 231
>gi|408410988|ref|ZP_11182176.1| Ribonuclease III [Lactobacillus sp. 66c]
gi|407874846|emb|CCK83982.1| Ribonuclease III [Lactobacillus sp. 66c]
Length = 232
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 48/115 (41%), Gaps = 16/115 (13%)
Query: 145 ALFSLACDDFQEAIFLYAHVSMY----------LWDDGVF-----YKNVLHELSLREGLP 189
AL + F A+FL +S L D G F +K L E + G
Sbjct: 118 ALLEDVFEAFNGALFLDQGISAVENFLKQTVYPLIDAGYFTPSRDFKTDLQEFLQQNGTV 177
Query: 190 VPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERK 244
Y +K + P F V VDG+V GR KKKAE AAK A + L ER+
Sbjct: 178 KIEYRVLKE-SQQPPHFEVEVSVDGQVLAQGEGRNKKKAEQDAAKHALSRLNERE 231
>gi|85724778|ref|NP_001033821.1| adenosine deaminase acting on RNA, isoform C [Drosophila
melanogaster]
gi|84798392|gb|ABC67164.1| adenosine deaminase acting on RNA, isoform C [Drosophila
melanogaster]
gi|294712595|gb|ADF29633.1| SD06892p [Drosophila melanogaster]
Length = 186
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN + L+ LR GL L + G H P F VEVDG+ + G+ GR+KK A ++AA
Sbjct: 56 KNTVAMLNELRHGLIYKLES--QTGPVHAPLFTISVEVDGQKYLGQ-GRSKKVARIEAAA 112
Query: 235 VAYTALIERK 244
A + I+ K
Sbjct: 113 TALRSFIQFK 122
>gi|386763624|ref|NP_001245472.1| adenosine deaminase acting on RNA, isoform L [Drosophila
melanogaster]
gi|383293144|gb|AFH07186.1| adenosine deaminase acting on RNA, isoform L [Drosophila
melanogaster]
Length = 370
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN + L+ LR GL L + G H P F VEVDG+ + G+ GR+KK A ++AA
Sbjct: 56 KNTVAMLNELRHGLIYKLES--QTGPVHAPLFTISVEVDGQKYLGQ-GRSKKVARIEAAA 112
Query: 235 VAYTALIERK 244
A + I+ K
Sbjct: 113 TALRSFIQFK 122
>gi|357588971|ref|ZP_09127637.1| ribonuclease III [Corynebacterium nuruki S6-4]
Length = 243
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%)
Query: 191 PLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P+YE+ G H TF + V DG V G TKK+AE AA+ AY AL
Sbjct: 193 PVYESEADGPAHDQTFHATVSFDGAVKGRGDGHTKKEAEHHAAREAYRAL 242
>gi|356552945|ref|XP_003544820.1| PREDICTED: ribonuclease 3-like protein 2-like [Glycine max]
Length = 345
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 3 KTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSV---NGLSFHSSVSCKSSKESQN 58
K K++ELC K+W +P Y KD G H+ +F +V + +G+ S K+++N
Sbjct: 270 KNKLRELCAVKKWPIPEYIIEKDSGPSHEKKFVCAVQIPTADGILQMSGDEKSRVKDAEN 329
Query: 59 DAAKL 63
AA L
Sbjct: 330 SAASL 334
>gi|301611383|ref|XP_002935222.1| PREDICTED: double-stranded RNA-specific editase B2-like [Xenopus
(Silurana) tropicalis]
Length = 731
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 176 KNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L + L E P Y + + G H P F VEV+G F G G TKKKA+M+AA+
Sbjct: 113 KNAL--VQLHELKPDLQYRFVSQTGPVHAPVFSVAVEVNGLTFEG-TGPTKKKAKMRAAE 169
Query: 235 VAYTALIE 242
+A + ++
Sbjct: 170 LALKSFVQ 177
>gi|222055246|ref|YP_002537608.1| Ribonuclease III [Geobacter daltonii FRC-32]
gi|221564535|gb|ACM20507.1| Ribonuclease III [Geobacter daltonii FRC-32]
Length = 238
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
+KT+ QEL H+ R PRY G DH F +V + G F KS KE++ A
Sbjct: 166 FKTEFQELAHRLRSLAPRYLLQGVSGPDHQRIFSVAVFI-GEEFMGEGLAKSKKEAEQAA 224
Query: 61 AK--LAFLHFTSPP 72
A+ +AFL +S P
Sbjct: 225 AEQGIAFLKKSSRP 238
>gi|449133751|ref|ZP_21769275.1| ribonuclease III [Rhodopirellula europaea 6C]
gi|448887627|gb|EMB17992.1| ribonuclease III [Rhodopirellula europaea 6C]
Length = 296
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
+KSVLQ +A+R+ +P+Y IRE GP H F +D F + + N K AE A
Sbjct: 216 HKSVLQQFAQRELSATPVYKLIRETGPDHRKMFLMGAMVDDRRF-APAWGNNKKDAEQRA 274
Query: 142 AKVALFSL 149
A AL L
Sbjct: 275 AANALAEL 282
>gi|417304879|ref|ZP_12091876.1| ribonuclease III [Rhodopirellula baltica WH47]
gi|327538797|gb|EGF25444.1| ribonuclease III [Rhodopirellula baltica WH47]
Length = 297
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
+KSVLQ +A+R+ +P+Y IRE GP H F +D F + + N K AE A
Sbjct: 217 HKSVLQQFAQRELSATPVYKLIRETGPDHRKMFLMGAMVDDRRF-APAWGNNKKDAEQRA 275
Query: 142 AKVALFSL 149
A AL L
Sbjct: 276 AANALAEL 283
>gi|260890105|ref|ZP_05901368.1| hypothetical protein GCWU000323_01267 [Leptotrichia hofstadii
F0254]
gi|260860128|gb|EEX74628.1| ribonuclease III [Leptotrichia hofstadii F0254]
Length = 243
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKT +QE K +P Y + G DHD F+ SVS N + + KS KE++ A
Sbjct: 166 YKTVLQEFVQGKYRKMPEYKLLNTKGPDHDKVFEISVSWNDKIYGVGIG-KSKKEAEKHA 224
Query: 61 AKLAFLHFTSPPPPPPPNV 79
AK A + + +
Sbjct: 225 AKEALVKLKNKSSKNRRTI 243
>gi|256827009|ref|YP_003150968.1| ribonuclease III [Cryptobacterium curtum DSM 15641]
gi|256583152|gb|ACU94286.1| ribonuclease III [Cryptobacterium curtum DSM 15641]
Length = 279
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 176 KNVLHELSLREGLPVPLYETIKC-GAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
K+ L E L+E P Y+ I+ G PH TF++ V + GRTKK+AE KAA+
Sbjct: 166 KSALQE-KLQEDGITPTYKLIETQGPPHDRTFVAAVYAGLQALARGVGRTKKEAESKAAQ 224
Query: 235 VAYTALIERK 244
A + L + K
Sbjct: 225 TALSHLPDEK 234
>gi|297717874|gb|ADI50080.1| ribonuclease III [Candidatus Odyssella thessalonicensis L13]
Length = 211
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 66 LHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHT 124
L T PP +KS+LQ + + + L P Y + + GPAHA F+ + +D H+
Sbjct: 133 LAITQAPPKD-------HKSLLQEWTQSRGLGIPAYELVNQTGPAHAPEFEILLKVDDHS 185
Query: 125 FESLEFFKNLKQAEHAAAKVAL 146
++ K+ K AE AAK L
Sbjct: 186 VKARG--KSRKLAEQEAAKQML 205
>gi|189241534|ref|XP_969823.2| PREDICTED: similar to adenosine deaminase [Tribolium castaneum]
gi|270001017|gb|EEZ97464.1| hypothetical protein TcasGA2_TC011295 [Tribolium castaneum]
Length = 580
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 184 LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE 242
LR GL E + G H P F VEVDG+ +YG G +KK A+ KAA+ A + I+
Sbjct: 28 LRVGLKYNFIE--QRGPSHAPLFKVAVEVDGQTYYGVGG-SKKLAKCKAAEEALKSFIQ 83
>gi|47228159|emb|CAF97788.1| unnamed protein product [Tetraodon nigroviridis]
Length = 189
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 169 WDDGVFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKK 227
W V KN L L+ LR GL + T + G H P F V+V+G F G+ G T K+
Sbjct: 3 WAWAVTQKNALVHLNELRPGLS--YHVTSRSGPLHAPLFAVGVDVNGVRFEGR-GPTVKR 59
Query: 228 AEMKAAKVAYTALIE 242
A+++AA++A + ++
Sbjct: 60 AKLRAAELALRSFVQ 74
>gi|34558193|ref|NP_908008.1| ribonuclease III [Wolinella succinogenes DSM 1740]
gi|81653364|sp|Q7M840.1|RNC_WOLSU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|34483912|emb|CAE10908.1| RIBONUCLEASE III [Wolinella succinogenes]
Length = 238
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 2 YKTKVQELCHQKRWSLPRYSTM-KDGADHDPRFKSSVSVNGLSFHSSVSCKSS-KESQND 59
YKT +QEL K P Y + G DH F+ +V V G + + +C SS KE+Q +
Sbjct: 155 YKTALQELTQAKFGETPEYVILGSSGPDHKKEFEVAVCVLGSEY--ARACGSSKKEAQQE 212
Query: 60 AAKLAFLHF 68
AA++A F
Sbjct: 213 AARIALEIF 221
>gi|453383360|dbj|GAC82261.1| ribonuclease III [Gordonia paraffinivorans NBRC 108238]
Length = 251
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 37/72 (51%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L ELS G P Y+ G H F ++ V GE GRTKK+AE +
Sbjct: 166 GLDWKTSLQELSSERGFGPPQYQISSTGPDHNKEFTAIAVVAGENLGEGVGRTKKEAEQQ 225
Query: 232 AAKVAYTALIER 243
AA A+ AL ER
Sbjct: 226 AAAHAWKALTER 237
>gi|410456969|ref|ZP_11310816.1| ribonuclease III [Bacillus bataviensis LMG 21833]
gi|409926943|gb|EKN64094.1| ribonuclease III [Bacillus bataviensis LMG 21833]
Length = 246
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
+K+ L EL R+G + Y ++ P H F+S V ++GE G++KK+AE AA
Sbjct: 175 FKSQLQELIQRDGTGMIEYRVLQEKGPAHNKEFVSKVSLNGEELGVGTGKSKKEAEQHAA 234
Query: 234 KVAYTAL 240
++A L
Sbjct: 235 QMALGVL 241
>gi|440718234|ref|ZP_20898695.1| ribonuclease III [Rhodopirellula baltica SWK14]
gi|436436569|gb|ELP30300.1| ribonuclease III [Rhodopirellula baltica SWK14]
Length = 297
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
+KSVLQ +A+R+ +P+Y IRE GP H F +D F + + N K AE A
Sbjct: 217 HKSVLQQFAQRELSATPVYKLIRETGPDHRKMFLMGAMVDDRRF-APAWGNNKKDAEQRA 275
Query: 142 AKVALFSL 149
A AL L
Sbjct: 276 AANALAEL 283
>gi|344923148|ref|ZP_08776609.1| ribonuclease III [Candidatus Odyssella thessalonicensis L13]
Length = 212
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 66 LHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHT 124
L T PP +KS+LQ + + + L P Y + + GPAHA F+ + +D H+
Sbjct: 133 LAITQAPPKD-------HKSLLQEWTQSRGLGIPAYELVNQTGPAHAPEFEILLKVDDHS 185
Query: 125 FESLEFFKNLKQAEHAAAKVAL 146
++ K+ K AE AAK L
Sbjct: 186 VKARG--KSRKLAEQEAAKQML 205
>gi|376248822|ref|YP_005140766.1| ribonuclease III [Corynebacterium diphtheriae HC04]
gi|376251621|ref|YP_005138502.1| ribonuclease III [Corynebacterium diphtheriae HC03]
gi|372113125|gb|AEX79184.1| ribonuclease III [Corynebacterium diphtheriae HC03]
gi|372115390|gb|AEX81448.1| ribonuclease III [Corynebacterium diphtheriae HC04]
Length = 249
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+ LQ +NL+ P Y+S GP H +F A V + G T N K AE AAA
Sbjct: 177 WKTTLQERLAERNLEMPKYTSTVTGPEHEQTFTAEVAVHG-TVLGTGVGTNKKLAEQAAA 235
Query: 143 KVAL 146
A+
Sbjct: 236 HKAV 239
>gi|227504755|ref|ZP_03934804.1| ribonuclease III [Corynebacterium striatum ATCC 6940]
gi|227198605|gb|EEI78653.1| ribonuclease III [Corynebacterium striatum ATCC 6940]
Length = 256
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QELC + + +P Y+ G +HD F + +V GL+ + V + K ++ AA
Sbjct: 176 WKTNLQELCAELKAPMPVYTATSTGPEHDQTFTAVATVAGLTVGNGVG-HNKKLAEQQAA 234
Query: 62 KLAFLHFTSPP 72
+ A P
Sbjct: 235 QEACQTLRETP 245
>gi|410667365|ref|YP_006919736.1| ribonuclease 3 [Thermacetogenium phaeum DSM 12270]
gi|409105112|gb|AFV11237.1| ribonuclease 3 [Thermacetogenium phaeum DSM 12270]
Length = 235
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKT +QEL K P Y +++ G DHD +F S V + + KS KES+ +A
Sbjct: 160 YKTHLQELVQSKGNESPYYQILEESGPDHDKKFTSGVFLKD-KLLGKGTGKSKKESEQNA 218
Query: 61 AKLAF 65
A+ A
Sbjct: 219 ARAAL 223
>gi|409391157|ref|ZP_11242849.1| ribonuclease III [Gordonia rubripertincta NBRC 101908]
gi|403198970|dbj|GAB86083.1| ribonuclease III [Gordonia rubripertincta NBRC 101908]
Length = 246
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 39/79 (49%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L ELS G P Y+ G H F ++ + GE GRTKK+AE +
Sbjct: 166 GLDWKTSLQELSSERGYGPPQYQISSTGPDHNKEFTAIAMIAGENLGEGVGRTKKEAEQQ 225
Query: 232 AAKVAYTALIERKLIFSLP 250
AA A+ AL ER S P
Sbjct: 226 AAAHAWKALTERASASSEP 244
>gi|32473407|ref|NP_866401.1| ribonuclease III [Rhodopirellula baltica SH 1]
gi|32398087|emb|CAD78182.1| ribonuclease III [Rhodopirellula baltica SH 1]
Length = 297
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
+KSVLQ +A+R+ +P+Y IRE GP H F +D F + + N K AE A
Sbjct: 217 HKSVLQQFAQRELSATPVYKLIRETGPDHRKMFLMGAMVDDRRF-APAWGNNKKDAEQRA 275
Query: 142 AKVALFSL 149
A AL L
Sbjct: 276 AANALAEL 283
>gi|306836417|ref|ZP_07469394.1| ribonuclease III [Corynebacterium accolens ATCC 49726]
gi|304567698|gb|EFM43286.1| ribonuclease III [Corynebacterium accolens ATCC 49726]
Length = 256
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLS 43
+KT +QELC + + +P YS G +HD F + +V GLS
Sbjct: 176 WKTTLQELCAELKAPMPVYSATATGPEHDQTFSAVATVAGLS 217
>gi|118587961|ref|ZP_01545371.1| Ribonuclease III [Stappia aggregata IAM 12614]
gi|118439583|gb|EAV46214.1| Ribonuclease III [Stappia aggregata IAM 12614]
Length = 236
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 3 KTKVQELCHQKRWSLPRYS-TMKDGADHDPRFKSSVSVNGL 42
KT +QE K PRY T +DG DH P F SV+V GL
Sbjct: 166 KTTLQEWAQSKSLPTPRYDVTSRDGPDHAPNFTVSVTVQGL 206
>gi|73748788|ref|YP_308027.1| ribonuclease III [Dehalococcoides sp. CBDB1]
gi|90101624|sp|Q3ZXY9.1|RNC_DEHSC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|73660504|emb|CAI83111.1| ribonuclease III [Dehalococcoides sp. CBDB1]
Length = 237
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK+ L EL + P Y P H FI+ V + VF +GR+KK+AE AA
Sbjct: 161 YKSRLQELIQAQLQLTPRYRITNFSGPEHNRLFIAEVYAEDRVFAEGSGRSKKEAETNAA 220
Query: 234 KVA 236
KVA
Sbjct: 221 KVA 223
>gi|407477596|ref|YP_006791473.1| ribonuclease 3 [Exiguobacterium antarcticum B7]
gi|407061675|gb|AFS70865.1| Ribonuclease 3 [Exiguobacterium antarcticum B7]
Length = 269
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 156 EAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDG 214
EA+F V+ +++ +K+ L E R GL YE I+ P H FIS V V
Sbjct: 182 EAVF--PKVASGFFEEQTDFKSQLQEAIQRVGLGQIEYEIIEERGPAHSREFISRVHVSD 239
Query: 215 EVFYGKAGRTKKKAEMKAAKVAYTAL 240
++ GR+KK+AE +AAK A L
Sbjct: 240 KLEGIGTGRSKKEAEQQAAKQALLVL 265
>gi|194902968|ref|XP_001980797.1| GG16917 [Drosophila erecta]
gi|190652500|gb|EDV49755.1| GG16917 [Drosophila erecta]
Length = 892
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 6 VQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLA 64
+ EL + +W+ P+Y +D G H+ F SV +NG ++ C + KE++ +AA L
Sbjct: 823 LNELTSKNKWTPPQYKLRQDIGPAHNRSFLFSVEINGQTYTPDRGCNNKKEAKLNAATLC 882
Query: 65 FLHFTSPPP 73
PP
Sbjct: 883 LRALGILPP 891
>gi|337291062|ref|YP_004630083.1| ribonuclease III [Corynebacterium ulcerans BR-AD22]
gi|334699368|gb|AEG84164.1| ribonuclease III [Corynebacterium ulcerans BR-AD22]
Length = 249
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 154 FQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVD 213
FQ+ I + V M+ D +K L E + LPVP+YE G H TF ++V V
Sbjct: 161 FQKKIDTASAVGMH--QD---WKTTLQERAAERKLPVPVYEASSTGPEHSQTFTAVVTVG 215
Query: 214 GEVFYGKAGRTKKKAEMKAAKVAYTALIE 242
G KK AE AA A L E
Sbjct: 216 TTALGEGIGPNKKLAEQAAAHKAVVFLQE 244
>gi|94469424|gb|ABF20201.1| ribonuclease III [Ehrlichia ruminantium]
Length = 145
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 176 KNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
K +L E + +G P P Y I K G H P F V +D G KK AE KAA
Sbjct: 75 KTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRIDSHETLHATGHNKKLAEQKAAS 134
Query: 235 V 235
+
Sbjct: 135 L 135
>gi|386763626|ref|NP_001245473.1| adenosine deaminase acting on RNA, isoform M [Drosophila
melanogaster]
gi|383293145|gb|AFH07187.1| adenosine deaminase acting on RNA, isoform M [Drosophila
melanogaster]
Length = 188
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN + L+ LR GL L + G H P F VEVDG+ + G+ GR+KK A ++AA
Sbjct: 58 KNTVAMLNELRHGLIYKLES--QTGPVHAPLFTISVEVDGQKYLGQ-GRSKKVARIEAAA 114
Query: 235 VAYTALIERK 244
A + I+ K
Sbjct: 115 TALRSFIQFK 124
>gi|218663008|ref|ZP_03518938.1| ribonuclease III [Rhizobium etli IE4771]
Length = 206
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 3 KTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
KT++QE H K P Y + G DHDPRFK +V V G+ + V Q A
Sbjct: 131 KTELQEWSHAKFGVTPIYRVDERSGPDHDPRFKVTVEVAGIKPETGVERSKRAAEQVAAT 190
Query: 62 KL 63
K+
Sbjct: 191 KM 192
>gi|421614937|ref|ZP_16055976.1| ribonuclease III [Rhodopirellula baltica SH28]
gi|408494274|gb|EKJ98893.1| ribonuclease III [Rhodopirellula baltica SH28]
Length = 266
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
+KSVLQ +A+R+ +P+Y IRE GP H F +D F + + N K AE A
Sbjct: 186 HKSVLQQFAQRELSATPVYKLIRETGPDHRKMFLMGAMVDDRRF-APAWGNNKKDAEQRA 244
Query: 142 AKVALFSL 149
A AL L
Sbjct: 245 AANALAEL 252
>gi|350412745|ref|XP_003489746.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Bombus impatiens]
Length = 467
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 84 KSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAK 143
K++L + + + P Y + ++G F++ VT+DG + S + KN K AE AA
Sbjct: 390 KTILHKWTQTQRKKMPNYDTQQKGKL----FQSIVTVDGRRYGSSFWEKNKKWAEQGAAL 445
Query: 144 VALFSLA 150
V LFSL
Sbjct: 446 VCLFSLG 452
>gi|148642236|ref|YP_001272749.1| ribonuclease III (dsRNA-specific), Rnc [Methanobrevibacter smithii
ATCC 35061]
gi|148551253|gb|ABQ86381.1| ribonuclease III (dsRNA-specific), Rnc [Methanobrevibacter smithii
ATCC 35061]
Length = 223
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
YK+V+ E + + + +CG PH TFI + +DG+ G+ KK+AE A+K
Sbjct: 153 YKSVIKEYGDAQEVDIEYKIIDECGVPHNKTFIISILIDGKEMGVGKGKNKKEAEQAASK 212
Query: 235 VAYTAL 240
A L
Sbjct: 213 QAMKKL 218
>gi|222444593|ref|ZP_03607108.1| hypothetical protein METSMIALI_00205 [Methanobrevibacter smithii
DSM 2375]
gi|261350869|ref|ZP_05976286.1| ribonuclease III [Methanobrevibacter smithii DSM 2374]
gi|222434158|gb|EEE41323.1| ribonuclease III [Methanobrevibacter smithii DSM 2375]
gi|288860206|gb|EFC92504.1| ribonuclease III [Methanobrevibacter smithii DSM 2374]
Length = 223
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
YK+V+ E + + + +CG PH TFI + +DG+ G+ KK+AE A+K
Sbjct: 153 YKSVIKEYGDAQEVDIEYKIIDECGVPHNKTFIISILIDGKEMGVGKGKNKKEAEQAASK 212
Query: 235 VAYTAL 240
A L
Sbjct: 213 QAMKKL 218
>gi|152993835|ref|YP_001359556.1| ribonuclease III [Sulfurovum sp. NBC37-1]
gi|189043369|sp|A6QCJ0.1|RNC_SULNB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|151425696|dbj|BAF73199.1| ribonuclease III [Sulfurovum sp. NBC37-1]
Length = 223
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK L EL+ P YE + P H F V +D + G++KK A+ KAA
Sbjct: 155 YKTALQELTQATHAVTPGYEMLGSSGPDHKKEFEIAVTLDNKTIATAKGKSKKDAQQKAA 214
Query: 234 KVAYTAL 240
K+A AL
Sbjct: 215 KIALEAL 221
>gi|58040241|ref|YP_192205.1| ribonuclease III [Gluconobacter oxydans 621H]
gi|58002655|gb|AAW61549.1| Ribonuclease III [Gluconobacter oxydans 621H]
Length = 174
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 176 KNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
K +L E L +GLP+P YE + P H P F V G G+AG +K+ AE AA
Sbjct: 104 KTLLQEYMLSQGLPLPHYELLSSDGPSHAPVFRVSVTTMGHTGTGEAG-SKRLAESAAA- 161
Query: 235 VAYTALIE 242
TAL++
Sbjct: 162 ---TALLK 166
>gi|77416567|sp|Q7UGZ7.2|RNC_RHOBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
Length = 266
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
+KSVLQ +A+R+ +P+Y IRE GP H F +D F + + N K AE A
Sbjct: 186 HKSVLQQFAQRELSATPVYKLIRETGPDHRKMFLMGAMVDDRRF-APAWGNNKKDAEQRA 244
Query: 142 AKVALFSL 149
A AL L
Sbjct: 245 AANALAEL 252
>gi|108762302|ref|YP_631944.1| ribonuclease III [Myxococcus xanthus DK 1622]
gi|123074286|sp|Q1D5X9.1|RNC_MYXXD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|108466182|gb|ABF91367.1| ribonuclease III [Myxococcus xanthus DK 1622]
Length = 260
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKT +QE+ H++ PRY + + G +H F+ + + +F + + +S KE++ A
Sbjct: 173 YKTLLQEMAHERLKLQPRYRVVSESGPEHSKVFEVELMLGETAF-ARATGRSKKEAEQSA 231
Query: 61 AKLAFLHF-------TSPPPPPP 76
A+ TSPPP P
Sbjct: 232 AQATLEKLREDAACPTSPPPGTP 254
>gi|386749829|ref|YP_006223036.1| ribonuclease III [Helicobacter cetorum MIT 00-7128]
gi|384556072|gb|AFI04406.1| ribonuclease III [Helicobacter cetorum MIT 00-7128]
Length = 234
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTM-KDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKT +QEL K +P+Y + ++G DH F+ ++ +N + ++ KS K++Q
Sbjct: 164 YKTALQELTQAKFGIIPKYELISENGPDHHKEFEIALLIND-TIYAKAKGKSKKDAQQQC 222
Query: 61 AKLAF 65
A +AF
Sbjct: 223 ALIAF 227
>gi|332024427|gb|EGI64625.1| Double-stranded RNA-specific editase Adar [Acromyrmex echinatior]
Length = 673
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 197 KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE 242
+ G H P F V++DG+ + GK GRTKK A+ AA++A +++
Sbjct: 114 QTGPTHAPIFTIAVQIDGQTYEGK-GRTKKMAKHAAAELALRNIVQ 158
>gi|195499487|ref|XP_002096969.1| GE25964 [Drosophila yakuba]
gi|194183070|gb|EDW96681.1| GE25964 [Drosophila yakuba]
Length = 908
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 6 VQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLA 64
+ EL + +W+ P+Y +D G H+ F SV +NG ++ C + KE++ +AA L
Sbjct: 839 LNELTSKNKWTPPQYKLRQDIGPAHNRSFLFSVEINGQTYTPDRGCNNKKEAKLNAATLC 898
Query: 65 FLHFTSPPP 73
PP
Sbjct: 899 LRALGILPP 907
>gi|405967551|gb|EKC32699.1| Double-stranded RNA-specific editase 1 [Crassostrea gigas]
Length = 687
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L+ ++ GL + G H PTFI VEV+G F G+ G TKK A + AA+
Sbjct: 79 KNALMQLNEIKPGLEFQF--VAQSGPVHAPTFIMSVEVNGTKFEGQ-GPTKKAARLSAAE 135
Query: 235 VAYTALIE 242
A + ++
Sbjct: 136 KALKSFVQ 143
>gi|406945190|gb|EKD76766.1| hypothetical protein ACD_42C00622G0001, partial [uncultured
bacterium]
Length = 130
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 84 KSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAK 143
K+ LQ + + + + PLY G AH F ++G FE++ + ++AE AAK
Sbjct: 63 KTTLQEWMQARQMPLPLYECTVTGDAHEQEFTVTCRVEGLAFETIGVSTSRRKAEQIAAK 122
Query: 144 VAL 146
+ L
Sbjct: 123 LFL 125
>gi|409349323|ref|ZP_11232815.1| Ribonuclease III [Lactobacillus equicursoris CIP 110162]
gi|407878260|emb|CCK84873.1| Ribonuclease III [Lactobacillus equicursoris CIP 110162]
Length = 232
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 50/115 (43%), Gaps = 16/115 (13%)
Query: 145 ALFSLACDDFQEAIFL---------YAHVSMY-LWDDGVF-----YKNVLHELSLREGLP 189
AL + F A+FL + ++Y L D G F +K L E + G
Sbjct: 118 ALLEDVFEAFNGALFLDQGIGAVENFLKQTVYPLIDAGYFTPSRDFKTDLQEFLQQNGTV 177
Query: 190 VPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERK 244
Y +K + P F V VDG+V GR KKKAE AAK A + L ER+
Sbjct: 178 KIEYRVLKE-SQQPPHFEVEVSVDGQVLAQGEGRNKKKAEQDAAKHALSRLNERE 231
>gi|190891073|ref|YP_001977615.1| ribonuclease III [Rhizobium etli CIAT 652]
gi|218515110|ref|ZP_03511950.1| ribonuclease III [Rhizobium etli 8C-3]
gi|417103286|ref|ZP_11961031.1| ribonuclease III protein [Rhizobium etli CNPAF512]
gi|238692512|sp|B3PUN8.1|RNC_RHIE6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|190696352|gb|ACE90437.1| ribonuclease III protein [Rhizobium etli CIAT 652]
gi|327191322|gb|EGE58355.1| ribonuclease III protein [Rhizobium etli CNPAF512]
Length = 239
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 3 KTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
KT++QE H K P Y + G DHDPRFK +V V G+ + V Q A
Sbjct: 164 KTELQEWSHAKFGVTPLYRVDERSGPDHDPRFKVTVEVAGIKPETGVERSKRAAEQVAAT 223
Query: 62 KL 63
K+
Sbjct: 224 KM 225
>gi|147669550|ref|YP_001214368.1| ribonuclease III [Dehalococcoides sp. BAV1]
gi|289432809|ref|YP_003462682.1| ribonuclease III [Dehalococcoides sp. GT]
gi|452203773|ref|YP_007483906.1| ribonuclease III [Dehalococcoides mccartyi DCMB5]
gi|146270498|gb|ABQ17490.1| RNAse III [Dehalococcoides sp. BAV1]
gi|288946529|gb|ADC74226.1| ribonuclease III [Dehalococcoides sp. GT]
gi|452110832|gb|AGG06564.1| ribonuclease III [Dehalococcoides mccartyi DCMB5]
Length = 248
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK+ L EL + P Y P H FI+ V + VF +GR+KK+AE AA
Sbjct: 172 YKSRLQELIQAQLQLTPRYRITNFSGPEHNRLFIAEVYAEDRVFAEGSGRSKKEAETNAA 231
Query: 234 KVA 236
KVA
Sbjct: 232 KVA 234
>gi|37929016|gb|AAP70345.1| ribonuclease III [Ehrlichia ruminantium]
gi|37929023|gb|AAP70347.1| ribonuclease III [Ehrlichia ruminantium]
gi|37929030|gb|AAP70349.1| ribonuclease III [Ehrlichia ruminantium]
gi|41814830|gb|AAS10486.1| ribonuclease III [Ehrlichia ruminantium]
Length = 171
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 176 KNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
K +L E + +G P P Y I K G H P F V +D G KK AE KAA
Sbjct: 101 KTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRIDSHETLHATGHNKKLAEQKAAS 160
Query: 235 V 235
+
Sbjct: 161 L 161
>gi|380024649|ref|XP_003696105.1| PREDICTED: double-stranded RNA-specific editase Adar-like [Apis
florea]
Length = 663
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 197 KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE 242
+ G H P F V++DG+ + GK GRTKK A+ AA++A +++
Sbjct: 98 QTGPTHAPIFTIAVQIDGQTYEGK-GRTKKMAKHAAAELALRNIVQ 142
>gi|348507383|ref|XP_003441235.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase-like [Oreochromis niloticus]
Length = 665
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 5/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
Y + L YA+++ L GP H +F RV ++G + KN K+A+ AA
Sbjct: 4 YVANLNEYAQKQRLVLQFEEVGAAGPDHIKTFTIRVVLNGKAYPD-GVGKNKKEAKQNAA 62
Query: 143 KVALFSLACD--DFQEAIFLYAHVSMYLWD-DGVFYKNVLHELSLREGLPVPLYETIKCG 199
K AL L + D E ++ S++ V Y L+E R + V E + G
Sbjct: 63 KNALAGLLEESADTTENAAEVSNTSVHQRSVSNVKYTCWLNEYGQRNRVIVRPVEATRPG 122
Query: 200 APHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAY 237
+ + + D E + +G+T+++A+ +AAK+ Y
Sbjct: 123 PNNDNQWCNFFVGDKE-YPAASGKTRREAKEEAAKLVY 159
>gi|148277633|ref|NP_001091684.1| adenosine deaminase acting on RNA [Apis mellifera]
gi|146260809|gb|ABQ14707.1| adenosine deaminase [Apis mellifera]
Length = 620
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 197 KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE 242
+ G H P F V++DG+ + GK GRTKK A+ AA++A +++
Sbjct: 55 QTGPTHAPIFTIAVQIDGQTYEGK-GRTKKMAKHAAAELALRNIVQ 99
>gi|366166773|ref|ZP_09466528.1| ribonuclease III [Acetivibrio cellulolyticus CD2]
Length = 234
Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK L E+ + YE I P H F+S V++D +V GRTKK+AE AA
Sbjct: 167 YKTQLQEIIQKNNDQKVTYEIIDEKGPDHSKIFVSQVKLDDKVIGVGEGRTKKEAEQMAA 226
Query: 234 KVA 236
K +
Sbjct: 227 KTS 229
>gi|334135564|ref|ZP_08509048.1| ribonuclease III [Paenibacillus sp. HGF7]
gi|333606900|gb|EGL18230.1| ribonuclease III [Paenibacillus sp. HGF7]
Length = 233
Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 148 SLACDDFQEAI--FLYAHVSMYLWDDG----VFYKNVLHELSLREGLPVPLYETIKCGAP 201
+L D EA+ FL HV Y+ +G + YK L E + + Y ++ P
Sbjct: 128 ALYLDQGLEAVKLFLQQHVFPYVSAEGKLLVIDYKTQLQEHTQHHNMGALEYRIVEERGP 187
Query: 202 -HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
H F++ V +D + AGR+KK+AE +AA A T L
Sbjct: 188 AHEREFVAEVYMDAKQLGKGAGRSKKEAEQQAASQALTKL 227
>gi|307213091|gb|EFN88613.1| Double-stranded RNA-binding protein Staufen-like protein 2
[Harpegnathos saltator]
Length = 797
Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 178 VLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAY 237
++HE +L+ GLPV + G PH+ TF++ V +V G+ G +KK ++ +AA++
Sbjct: 420 LVHETALKRGLPVSFEVVSESGKPHIRTFMTKCTVGDKVTVGE-GSSKKVSKKRAAELML 478
Query: 238 TAL 240
L
Sbjct: 479 EEL 481
>gi|195153156|ref|XP_002017495.1| GL22329 [Drosophila persimilis]
gi|194112552|gb|EDW34595.1| GL22329 [Drosophila persimilis]
Length = 854
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 6 VQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLA 64
+ EL + RW+ P+Y ++ G H F SV +NG S+ C + KE++ +AAKL
Sbjct: 785 LNELTSKNRWTPPQYILQQESGPSHIRSFLFSVEINGQSYTPDRPCNNKKEAKLNAAKLC 844
Query: 65 F 65
Sbjct: 845 L 845
>gi|432909594|ref|XP_004078197.1| PREDICTED: double-stranded RNA-specific adenosine deaminase-like
[Oryzias latipes]
Length = 1336
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 178 VLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAY 237
VL E S R G P+ T + G PH P F V+V +F + +KK A AA+ A
Sbjct: 713 VLMEYSQRSGKPIEFIATGQTGPPHDPRFKYRVKVGENLFAESSAPSKKAARQLAAEEAV 772
Query: 238 TALI-ERKLIFSLPF 251
L+ + KL + P
Sbjct: 773 KELMADGKLQLNKPL 787
>gi|241203889|ref|YP_002974985.1| ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|424874568|ref|ZP_18298230.1| ribonuclease III [Rhizobium leguminosarum bv. viciae WSM1455]
gi|240857779|gb|ACS55446.1| ribonuclease III [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|393170269|gb|EJC70316.1| ribonuclease III [Rhizobium leguminosarum bv. viciae WSM1455]
Length = 239
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 3 KTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
KT++QE H K P Y + G DHDPRFK +V V G+ + V Q A
Sbjct: 164 KTELQEWSHAKFGVTPIYRVDERSGPDHDPRFKVTVEVAGIKPETGVERSKRAAEQVAAT 223
Query: 62 KL 63
K+
Sbjct: 224 KM 225
>gi|116251277|ref|YP_767115.1| ribonuclease III [Rhizobium leguminosarum bv. viciae 3841]
gi|189043336|sp|Q1MJ54.1|RNC_RHIL3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|115255925|emb|CAK07006.1| putative ribonuclease III [Rhizobium leguminosarum bv. viciae 3841]
Length = 239
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 3 KTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
KT++QE H K P Y + G DHDPRFK +V V G+ + V Q A
Sbjct: 164 KTELQEWSHAKFGVTPIYRVDERSGPDHDPRFKVTVEVAGIKPETGVERSKRAAEQVAAT 223
Query: 62 KL 63
K+
Sbjct: 224 KM 225
>gi|82469800|gb|ABB77158.1| R2D2 [Drosophila biarmipes]
Length = 302
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 179 LHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
L + +R +P+P E ++ CG P+ P F++ V V YGK+ + KK A +AA
Sbjct: 91 LRDYCVRHEMPLPTIEIVQQCGTPNAPEFVACCSVASIVRYGKSDK-KKDARQRAA 145
>gi|332031602|gb|EGI71074.1| Double-stranded RNA-binding protein Staufen-like protein 2
[Acromyrmex echinatior]
Length = 804
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Query: 137 AEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--------VLHELSLREGL 188
A H AA AL L E I + + G+ N ++HE +L+ GL
Sbjct: 377 ARHDAASRALEQLRQLPLPEEIANTNNTNENGTLGGIDDPNAELKSPVSLVHETALKRGL 436
Query: 189 PVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
PV + G PH+ TF++ V +V G+ G +KK ++ +AA++ L
Sbjct: 437 PVSFEVVSESGKPHIRTFMTKCTVGEKVTVGE-GSSKKVSKKRAAELMLDEL 487
>gi|86357028|ref|YP_468920.1| ribonuclease III [Rhizobium etli CFN 42]
gi|123512466|sp|Q2KAE3.1|RNC_RHIEC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|86281130|gb|ABC90193.1| ribonuclease III protein [Rhizobium etli CFN 42]
Length = 239
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 3 KTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
KT++QE H K P Y + G DHDPRF+ +V V G+ S V Q A
Sbjct: 164 KTELQEWSHAKFGVTPIYRVDERSGPDHDPRFRVTVEVAGIKPESGVERSKRAAEQVAAT 223
Query: 62 KL 63
K+
Sbjct: 224 KM 225
>gi|393214931|gb|EJD00423.1| hypothetical protein FOMMEDRAFT_169889 [Fomitiporia mediterranea
MF3/22]
Length = 172
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 25 DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPPPPPPPNVQCRYK 84
+G H P++ S S++G + + +C ++ S + A + P P+ + Y
Sbjct: 50 EGEAHVPQWTSICSIDGEEYGTGSAC--TRRSADKEAAYQTMRMLEDKGVPLPSTR-NYY 106
Query: 85 SVLQNYARRKNLDSP-LYSSIREGPAHACSFKARVTIDG 122
+ +Y R KNL ++ GPAH +++ V++DG
Sbjct: 107 PIFMDYIREKNLAGRIMFEPFWRGPAHKPTWRCIVSLDG 145
>gi|125777342|ref|XP_001359575.1| GA20947 [Drosophila pseudoobscura pseudoobscura]
gi|54639322|gb|EAL28724.1| GA20947 [Drosophila pseudoobscura pseudoobscura]
Length = 851
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 6 VQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLA 64
+ EL + RW+ P+Y ++ G H F SV +NG S+ C + KE++ +AAKL
Sbjct: 782 LNELTSKNRWTPPQYILQQESGPSHIRSFLFSVEINGQSYTPDRPCNNKKEAKLNAAKLC 841
Query: 65 F 65
Sbjct: 842 L 842
>gi|404258870|ref|ZP_10962187.1| ribonuclease III [Gordonia namibiensis NBRC 108229]
gi|403402650|dbj|GAC00597.1| ribonuclease III [Gordonia namibiensis NBRC 108229]
Length = 242
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L ELS G P Y+ G H F ++ + GE GRTKK+AE +
Sbjct: 166 GLDWKTSLQELSSERGYGPPQYQISSTGPDHNKEFTAIAMIAGENLGEGVGRTKKEAEQQ 225
Query: 232 AAKVAYTALIER 243
AA A+ AL ER
Sbjct: 226 AAAHAWKALTER 237
>gi|322800091|gb|EFZ21197.1| hypothetical protein SINV_10966 [Solenopsis invicta]
Length = 804
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 178 VLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAY 237
++HE +L+ GLPV + G PH+ TF++ V +V G+ G +KK ++ +AA++
Sbjct: 426 LVHETALKRGLPVSFEVVSESGKPHIRTFMTKCTVGEKVTVGE-GSSKKVSKKRAAEL-- 482
Query: 238 TALIERKLIFSLP 250
L E K + LP
Sbjct: 483 -MLDELKRLPPLP 494
>gi|42523419|ref|NP_968799.1| ribonuclease III [Bdellovibrio bacteriovorus HD100]
gi|81617308|sp|Q6MLR5.1|RNC_BDEBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|39575625|emb|CAE79792.1| ribonuclease III [Bdellovibrio bacteriovorus HD100]
Length = 234
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK L EL + P YE + + G PH F+ V+V +V+ GR+KK AE AA
Sbjct: 163 YKTRLQELVQKSSKETPRYEVLAEEGPPHDREFLVCVKVKEDVWAQGRGRSKKNAEQMAA 222
Query: 234 KVA 236
K A
Sbjct: 223 KNA 225
>gi|408381554|ref|ZP_11179103.1| ribonuclease 3 [Methanobacterium formicicum DSM 3637]
gi|407816021|gb|EKF86584.1| ribonuclease 3 [Methanobacterium formicicum DSM 3637]
Length = 217
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 163 HVSMYLWDDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKA 221
H ++ +D YK+ L +LS ++G + +YE + + G PH F +DG+ F
Sbjct: 144 HGDIFFYD----YKSELQQLSNKDGFSI-IYELLNEKGEPHKKIFTMAAMIDGKNFGEGG 198
Query: 222 GRTKKKAEMKAAKVAYTAL 240
G +KK+A+ AAK A L
Sbjct: 199 GGSKKEAQQNAAKEALKKL 217
>gi|421587301|ref|ZP_16032721.1| ribonuclease III [Rhizobium sp. Pop5]
gi|403708258|gb|EJZ23014.1| ribonuclease III [Rhizobium sp. Pop5]
Length = 239
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 3 KTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
KT++QE H K P Y + G DHDPRFK +V V G+ + V Q A
Sbjct: 164 KTELQEWSHAKFGVTPVYRVDERSGPDHDPRFKVTVEVAGVKPETGVERSKRAAEQVAAT 223
Query: 62 KL 63
K+
Sbjct: 224 KM 225
>gi|386775221|ref|ZP_10097599.1| RNAse III [Brachybacterium paraconglomeratum LC44]
Length = 250
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G +K+ L E++ EG V +Y + G H TF + V V+G V G +KK AE+
Sbjct: 171 GYDFKSRLQEIAAAEGKDV-VYALTESGLEHQKTFTATVTVEGVVTARGDGASKKDAELA 229
Query: 232 AAKVAYTALIERK 244
AA+ A ++ +
Sbjct: 230 AAQNAVRGVLAER 242
>gi|302807261|ref|XP_002985343.1| hypothetical protein SELMODRAFT_446247 [Selaginella moellendorffii]
gi|300146806|gb|EFJ13473.1| hypothetical protein SELMODRAFT_446247 [Selaginella moellendorffii]
Length = 1142
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 176 KNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAE 229
K +L L R G VP Y+T G+ FIS V V G+ F G+ +KK+AE
Sbjct: 1066 KGILQTLVQRAGFAVPTYQTRSSGS----QFISCVVVRGKKFIGEPAESKKQAE 1115
>gi|424880853|ref|ZP_18304485.1| ribonuclease III [Rhizobium leguminosarum bv. trifolii WU95]
gi|392517216|gb|EIW41948.1| ribonuclease III [Rhizobium leguminosarum bv. trifolii WU95]
Length = 239
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 3 KTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
KT++QE H K P Y + G DHDPRFK +V V G+ + V Q A
Sbjct: 164 KTELQEWSHAKFGVTPIYRVDERSGPDHDPRFKVTVEVAGIKPETGVERSKRAAEQVAAT 223
Query: 62 KL 63
K+
Sbjct: 224 KM 225
>gi|418048326|ref|ZP_12686414.1| Ribonuclease 3 [Mycobacterium rhodesiae JS60]
gi|353193996|gb|EHB59500.1| Ribonuclease 3 [Mycobacterium rhodesiae JS60]
Length = 234
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVS 49
+KT +QELC K P Y G DHD +F ++V V + + V
Sbjct: 162 WKTSLQELCASKGLGPPSYVVTSTGPDHDKQFTATVVVGETDYGTGVG 209
>gi|343925329|ref|ZP_08764854.1| ribonuclease 3 [Gordonia alkanivorans NBRC 16433]
gi|343764768|dbj|GAA11780.1| ribonuclease 3 [Gordonia alkanivorans NBRC 16433]
Length = 241
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L ELS G P Y+ G H F ++ + GE GRTKK+AE +
Sbjct: 165 GLDWKTSLQELSSERGYGPPQYQISSTGPDHNKEFTAIAMIAGENLGEGVGRTKKEAEQQ 224
Query: 232 AAKVAYTALIER 243
AA A+ AL ER
Sbjct: 225 AAAHAWKALTER 236
>gi|373498045|ref|ZP_09588560.1| ribonuclease III [Fusobacterium sp. 12_1B]
gi|404367694|ref|ZP_10973056.1| ribonuclease III [Fusobacterium ulcerans ATCC 49185]
gi|313688785|gb|EFS25620.1| ribonuclease III [Fusobacterium ulcerans ATCC 49185]
gi|371962085|gb|EHO79694.1| ribonuclease III [Fusobacterium sp. 12_1B]
Length = 235
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 60 AAKLAFLHFTSPPPPPPPNVQC-RYKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKAR 117
A K A H N +K++LQ Y++R+ P Y IRE GP H F+
Sbjct: 138 AKKYALSHIQDSIDHVDKNEDILDFKTILQEYSQREYKIIPSYEVIRETGPDHQKIFEIE 197
Query: 118 VTIDGHTFESLEFFKNLKQAEHAAAK 143
V I T KN K AE +AAK
Sbjct: 198 VKIGDRTGRGT--GKNKKSAEQSAAK 221
>gi|405380036|ref|ZP_11033880.1| ribonuclease III [Rhizobium sp. CF142]
gi|397323441|gb|EJJ27835.1| ribonuclease III [Rhizobium sp. CF142]
Length = 238
Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 3 KTKVQELCHQKRWSLPRYSTM-KDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
KT++QE H K P Y + G DHDPRFK +V V G++ + + +S + ++ AA
Sbjct: 163 KTELQEWSHAKYGVTPVYRVEERSGPDHDPRFKVTVEVAGVAPETGIE-RSKRAAEQVAA 221
>gi|327262381|ref|XP_003216003.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase-like [Anolis carolinensis]
Length = 439
Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 65/167 (38%), Gaps = 14/167 (8%)
Query: 87 LQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVAL 146
L Y +R L GP H F V ID + E K K+A+ AA +A
Sbjct: 15 LHEYCQRNRLQLEYLELDIRGPPHDRIFTVAVQIDKIQYRQCEG-KTKKEAKAHAAVLAW 73
Query: 147 FS--------LACDDFQEAIFLYAHV-----SMYLWDDGVFYKNVLHELSLREGLPVPLY 193
S LA + Q+ + + + + Y ++L+E +L+ V
Sbjct: 74 ESIETGNEANLASEAHQQPLHAPLQLPSPLPAANITAVSTNYISLLNEYALKNKKIVEFG 133
Query: 194 ETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
K G H P F ++DGE+ G K A+ AAK+AY L
Sbjct: 134 LESKDGPDHKPVFSQSCKIDGEILGVGTGNNKNIAKFNAAKMAYEKL 180
>gi|326680329|ref|XP_694444.5| PREDICTED: hypothetical protein LOC566084 [Danio rerio]
Length = 937
Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 74 PPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKN 133
P P + RYK+ L + R K P+++ +E A ++ +VT++G +F + F +
Sbjct: 319 PLLPGIPPRYKNHLFEFCRAKKWLEPVFTETQE----AQGYRGKVTVNGQSFTGIRVFND 374
Query: 134 LKQAEHAAAKVAL 146
K A A +AL
Sbjct: 375 KKGAHQEVACIAL 387
>gi|194744759|ref|XP_001954860.1| GF18480 [Drosophila ananassae]
gi|190627897|gb|EDV43421.1| GF18480 [Drosophila ananassae]
Length = 871
Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 6 VQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLA 64
+ EL + +W+ P Y+ ++ G H F SV +NG ++ C + KE++ +AAKL
Sbjct: 802 LNELTSKNKWTPPHYTLRENTGPPHSRTFLFSVEINGQTYTPDRGCNNKKEAKLNAAKLC 861
Query: 65 FLHFTSPPP 73
PP
Sbjct: 862 LCALGILPP 870
>gi|426403897|ref|YP_007022868.1| ribonuclease III [Bdellovibrio bacteriovorus str. Tiberius]
gi|425860565|gb|AFY01601.1| ribonuclease III [Bdellovibrio bacteriovorus str. Tiberius]
Length = 234
Score = 38.1 bits (87), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK L EL + P YE + + G PH F+ V+V +V+ GR+KK AE AA
Sbjct: 163 YKTRLQELVQKSSKETPRYEVLAEEGPPHDREFLVCVKVKEDVWAQGRGRSKKNAEQMAA 222
Query: 234 KVA 236
K A
Sbjct: 223 KNA 225
>gi|452911420|ref|ZP_21960088.1| Ribonuclease III [Kocuria palustris PEL]
gi|452833348|gb|EME36161.1| Ribonuclease III [Kocuria palustris PEL]
Length = 241
Score = 38.1 bits (87), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 167 YLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKK 226
++ +G +K + EL+ G+ YE G H +F + + G V G +KK
Sbjct: 151 FVIREGRDWKTEIQELAAMRGMGAVTYEVEGTGPDHNRSFTASCLLGGTVHGTGPGTSKK 210
Query: 227 KAEMKAAKVAYTAL 240
+AE +AA+ AY+A+
Sbjct: 211 EAERRAAESAYSAI 224
>gi|400975048|ref|ZP_10802279.1| ribonuclease III [Salinibacterium sp. PAMC 21357]
Length = 233
Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 31/65 (47%)
Query: 176 KNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKV 235
K L EL+ + G P Y G H F + V + GEV G +KK AEM AA
Sbjct: 164 KTSLQELAAKMGRGAPDYRIEDSGPDHSKRFHASVVLSGEVISTGIGSSKKHAEMAAALE 223
Query: 236 AYTAL 240
A+T L
Sbjct: 224 AWTLL 228
>gi|260834651|ref|XP_002612323.1| hypothetical protein BRAFLDRAFT_265495 [Branchiostoma floridae]
gi|229297700|gb|EEN68332.1| hypothetical protein BRAFLDRAFT_265495 [Branchiostoma floridae]
Length = 444
Score = 38.1 bits (87), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 84 KSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAK 143
K++L N++R + L P Y ++++G F + VT+ + S + K K AE AAA
Sbjct: 374 KTILLNWSRTEYLPQPTYETVKQGSD--TKFNSVVTVGDKRYASSFWHKAKKLAEQAAAS 431
Query: 144 VALFSLACDD 153
V L +L D
Sbjct: 432 VCLRTLGLHD 441
>gi|134299915|ref|YP_001113411.1| ribonuclease III [Desulfotomaculum reducens MI-1]
gi|189043307|sp|A4J683.1|RNC_DESRM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|134052615|gb|ABO50586.1| RNAse III [Desulfotomaculum reducens MI-1]
Length = 246
Score = 38.1 bits (87), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 175 YKNVLHELSLREGLPVPLYETI--KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKA 232
YK L E+ L++ P PL TI + G H TF + V G+V +G +KK+AE +A
Sbjct: 165 YKTELQEI-LQQSSPDPLTYTIMDESGPDHDKTFTAGVIYKGKVIGKGSGHSKKEAEQQA 223
Query: 233 AKVAYTAL 240
AK A+ L
Sbjct: 224 AKDAFQHL 231
>gi|452205270|ref|YP_007485399.1| ribonuclease III [Dehalococcoides mccartyi BTF08]
gi|452112326|gb|AGG08057.1| ribonuclease III [Dehalococcoides mccartyi BTF08]
Length = 248
Score = 38.1 bits (87), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 43/108 (39%), Gaps = 4/108 (3%)
Query: 133 NLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSM---YLWDDGVFYKNVLHELSLREGLP 189
NL A A D +E IF M + YK+ L EL +
Sbjct: 127 NLAGAFEAVLAAIYIDKGMDVTREVIFRLFKTEMERVQTLSSNIDYKSRLQELIQAQLQL 186
Query: 190 VPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
P Y P H FI+ V + VF +GR+KK+AE AAKVA
Sbjct: 187 TPRYRITNFSGPEHNRLFIAEVYAEDRVFAEGSGRSKKEAEASAAKVA 234
>gi|296120504|ref|YP_003628282.1| ribonuclease III [Planctomyces limnophilus DSM 3776]
gi|296012844|gb|ADG66083.1| ribonuclease III [Planctomyces limnophilus DSM 3776]
Length = 263
Score = 38.1 bits (87), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
YKSVLQ YA++ ++P Y ++E GP H FK + G + + N K+AE A
Sbjct: 162 YKSVLQQYAQKTLGETPRYDLLKEYGPDHLKYFKVSAAL-GEVVYAAAWGINKKEAEQKA 220
Query: 142 AKVALFSL 149
A AL L
Sbjct: 221 AANALSEL 228
>gi|319898692|ref|YP_004158785.1| ribonuclease III [Bartonella clarridgeiae 73]
gi|319402656|emb|CBI76202.1| ribonuclease III [Bartonella clarridgeiae 73]
Length = 234
Score = 38.1 bits (87), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 3 KTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSK-ESQNDA 60
KT++QE H K + P Y ++ G DHDP F VS+ G F S + SSK +++ DA
Sbjct: 158 KTELQEWAHTKDRAHPHYQVLQRCGPDHDPIFVVEVSICG--FASEIGRGSSKRQAERDA 215
Query: 61 AK 62
A+
Sbjct: 216 AE 217
>gi|227494679|ref|ZP_03924995.1| ribonuclease III [Actinomyces coleocanis DSM 15436]
gi|226831861|gb|EEH64244.1| ribonuclease III [Actinomyces coleocanis DSM 15436]
Length = 256
Score = 38.1 bits (87), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
YK L E L P+YE G H FI+ V V GE+ +KK A+ +AA+
Sbjct: 174 YKTTLQEYCAEASLGEPIYEAEGFGPDHARYFIATVTVGGELVGHGQASSKKGAKSEAAR 233
Query: 235 VAY 237
Y
Sbjct: 234 AGY 236
>gi|304392070|ref|ZP_07374012.1| ribonuclease III [Ahrensia sp. R2A130]
gi|303296299|gb|EFL90657.1| ribonuclease III [Ahrensia sp. R2A130]
Length = 244
Score = 38.1 bits (87), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 3 KTKVQELCHQKRWSLPRYSTM-KDGADHDPRFKSSVSVNGLS 43
KT +QE H P Y+ + K G DHDP FK SV+++G+S
Sbjct: 164 KTALQEWAHTHSGETPVYTLVEKTGPDHDPLFKISVAIHGVS 205
>gi|397691446|ref|YP_006528700.1| ribonuclease III [Melioribacter roseus P3M]
gi|395812938|gb|AFN75687.1| ribonuclease III [Melioribacter roseus P3M]
Length = 254
Score = 38.1 bits (87), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YK ++ EL H K+ S PRY + + G HD F V VN S K+ K ++ +A
Sbjct: 181 YKGQLLELTHSKKISSPRYVVVSETGPQHDKEFVVDVFVNNEKLGSG-KGKNKKTAEQNA 239
Query: 61 AKLAFLHFTSPP 72
AK A P
Sbjct: 240 AKDALSKIKDAP 251
>gi|348574347|ref|XP_003472952.1| PREDICTED: interferon-induced, double-stranded RNA-activated
protein kinase-like [Cavia porcellus]
Length = 481
Score = 38.1 bits (87), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%)
Query: 174 FYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
FY L++ + G+ V + G PH F V ++ F GRTK+ A+ AA
Sbjct: 9 FYIEELNKYQQKHGVKVSYEKLSVTGPPHNSVFTFRVIIEDRTFPQGEGRTKQDAKNSAA 68
Query: 234 KVAYTAL 240
K+A+T L
Sbjct: 69 KIAFTIL 75
>gi|371927263|pdb|2LJH|A Chain A, Nmr Structure Of Double-Stranded Rna-Specific Editase Adar
Length = 114
Score = 37.7 bits (86), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 176 KNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN + L+ LR GL L + G H P F VEVDG+ + G+ GR+KK A ++AA
Sbjct: 37 KNTVAMLNELRHGLIYKLES--QTGPVHAPLFTISVEVDGQKYLGQ-GRSKKVARIEAAA 93
Query: 235 VAYTALIERK 244
A + I+ K
Sbjct: 94 TALRSFIQFK 103
>gi|162147937|ref|YP_001602398.1| ribonuclease III [Gluconacetobacter diazotrophicus PAl 5]
gi|209542555|ref|YP_002274784.1| Ribonuclease III [Gluconacetobacter diazotrophicus PAl 5]
gi|161786514|emb|CAP56096.1| putative ribonuclease III [Gluconacetobacter diazotrophicus PAl 5]
gi|209530232|gb|ACI50169.1| Ribonuclease III [Gluconacetobacter diazotrophicus PAl 5]
Length = 249
Score = 37.7 bits (86), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 176 KNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAG 222
K L E L GLP+P Y T++ P H P F+ V G+ G AG
Sbjct: 181 KTALQEWVLARGLPLPAYRTVQMDGPSHAPRFVIAVTAAGQSAEGIAG 228
>gi|386714302|ref|YP_006180625.1| ribonuclease III [Halobacillus halophilus DSM 2266]
gi|384073858|emb|CCG45351.1| ribonuclease III [Halobacillus halophilus DSM 2266]
Length = 230
Score = 37.7 bits (86), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 159 FLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVF 217
++Y V + + +K+ L E R+ YE ++ P H FI+ V + GEV
Sbjct: 144 YVYPKVKKGAFSHAMDFKSQLQEFIQRDKNSKIEYEIVEERGPAHSREFIAHVRIQGEVG 203
Query: 218 YGKAGRTKKKAEMKAAKVA 236
GRTKK+AE +AA+ A
Sbjct: 204 GIGVGRTKKEAEQRAAQKA 222
>gi|302795757|ref|XP_002979641.1| hypothetical protein SELMODRAFT_419303 [Selaginella moellendorffii]
gi|300152401|gb|EFJ19043.1| hypothetical protein SELMODRAFT_419303 [Selaginella moellendorffii]
Length = 1665
Score = 37.7 bits (86), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 176 KNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAE 229
K +L L R G VP Y+T G+ FIS V V G+ F G+ +KK+AE
Sbjct: 949 KGILQTLVQRAGFAVPTYQTRSSGS----QFISCVVVRGKKFIGEPAESKKQAE 998
>gi|337269776|ref|YP_004613831.1| ribonuclease III [Mesorhizobium opportunistum WSM2075]
gi|336030086|gb|AEH89737.1| ribonuclease III [Mesorhizobium opportunistum WSM2075]
Length = 237
Score = 37.7 bits (86), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 3 KTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSK 54
KT++QE HQ ++P Y ++G DHDP F SV V +F +V SK
Sbjct: 166 KTELQEWAHQAASAVPAYQIDSREGPDHDPLFTVSVRVG--TFQPAVGSGRSK 216
>gi|169350084|ref|ZP_02867022.1| hypothetical protein CLOSPI_00826 [Clostridium spiroforme DSM 1552]
gi|169293297|gb|EDS75430.1| ribonuclease III [Clostridium spiroforme DSM 1552]
Length = 226
Score = 37.7 bits (86), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 160 LYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFY 218
+Y HV+ +DD +K L EL + YE + P + P F V +D +
Sbjct: 143 IYRHVNDVNYDDITDFKTKLQELIQADQRKTVTYELLSATGPSNNPVFEMAVRMDDMILG 202
Query: 219 GKAGRTKKKAEMKAAKVAYTAL 240
G +KK+AE +AAK A L
Sbjct: 203 TGIGSSKKRAEQQAAKDALNKL 224
>gi|407784395|ref|ZP_11131544.1| ribonuclease III [Celeribacter baekdonensis B30]
gi|407204097|gb|EKE74078.1| ribonuclease III [Celeribacter baekdonensis B30]
Length = 227
Score = 37.7 bits (86), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 84 KSVLQNYARRKNLDSPLYSSI-REGPAHACSFKARVTID-GHTFESLEFFKNLKQAEHAA 141
K+ LQ +A+ + P Y+ I R+GP HA F VT++ G T +S K +QAE A
Sbjct: 159 KTALQEWAQARGQKPPKYTEISRKGPDHAPVFTIEVTLESGETAQSEATSK--RQAEQAV 216
Query: 142 AKVALFSL 149
AK L L
Sbjct: 217 AKALLTKL 224
>gi|386748059|ref|YP_006221267.1| ribonuclease III [Helicobacter cetorum MIT 99-5656]
gi|384554301|gb|AFI06057.1| ribonuclease III [Helicobacter cetorum MIT 99-5656]
Length = 234
Score = 37.7 bits (86), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKT +QEL K +P+Y +K+ G DH F+ ++ +N + ++ KS KE++
Sbjct: 164 YKTALQELTQAKFGVIPKYELLKESGPDHHKEFEIALFINN-TIYAKAKGKSKKEAEQQC 222
Query: 61 A 61
A
Sbjct: 223 A 223
>gi|403253913|ref|ZP_10920213.1| ribonuclease III [Thermotoga sp. EMP]
gi|402810816|gb|EJX25305.1| ribonuclease III [Thermotoga sp. EMP]
Length = 240
Score = 37.7 bits (86), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMP-TFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK L E+ E P Y ++ F+ V VDG+ GRTKK+AE +AA
Sbjct: 169 YKTALQEIVQSEHKVPPEYVLVRTEKNDGDRIFVVEVRVDGKTIATGKGRTKKEAEKEAA 228
Query: 234 KVAYTALIERK 244
++AY L++ +
Sbjct: 229 RIAYEKLLKER 239
>gi|100271808|gb|ABF69304.1| ribonuclease III [Ehrlichia ruminantium]
gi|100271814|gb|ABF69308.1| ribonuclease III [Ehrlichia ruminantium]
gi|100271820|gb|ABF69312.1| ribonuclease III [Ehrlichia ruminantium]
gi|100271823|gb|ABF69314.1| ribonuclease III [Ehrlichia ruminantium]
gi|100271826|gb|ABF69316.1| ribonuclease III [Ehrlichia ruminantium]
gi|100271829|gb|ABF69318.1| ribonuclease III [Ehrlichia ruminantium]
gi|100271835|gb|ABF69322.1| ribonuclease III [Ehrlichia ruminantium]
gi|100271847|gb|ABF69330.1| ribonuclease III [Ehrlichia ruminantium]
gi|108951328|gb|ABG25048.1| ribonuclease III [Ehrlichia ruminantium]
gi|108951331|gb|ABG25050.1| ribonuclease III [Ehrlichia ruminantium]
Length = 137
Score = 37.7 bits (86), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 176 KNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
K +L E + +G P P Y I K G H P F V ++ G KK AE KAA
Sbjct: 67 KTILQEWAQSKGFPAPSYHIINKSGPDHNPCFTVEVRINSHETLHATGHNKKLAEQKAAS 126
Query: 235 V 235
+
Sbjct: 127 L 127
>gi|157150981|ref|YP_001450082.1| ribonuclease III [Streptococcus gordonii str. Challis substr. CH1]
gi|189043362|sp|A8AWC2.1|RNC_STRGC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|157075775|gb|ABV10458.1| Ribonuclease III (RNase III) [Streptococcus gordonii str. Challis
substr. CH1]
Length = 232
Score = 37.7 bits (86), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK L EL G LY+ + + G H F V VDG + GR+KK AE +AA
Sbjct: 161 YKTKLQELLQSNGDVEILYQVVSESGPAHAKNFEVSVSVDGRLVGKGQGRSKKLAEQEAA 220
Query: 234 KVAY 237
K A+
Sbjct: 221 KNAF 224
>gi|262282633|ref|ZP_06060401.1| ribonuclease III [Streptococcus sp. 2_1_36FAA]
gi|262261924|gb|EEY80622.1| ribonuclease III [Streptococcus sp. 2_1_36FAA]
Length = 232
Score = 37.7 bits (86), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK L EL G LY+ + + G H F V VDG + GR+KK AE +AA
Sbjct: 161 YKTKLQELLQSNGDVEILYQVVSESGPAHAKNFEVSVSVDGRLVGKGQGRSKKLAEQEAA 220
Query: 234 KVAY 237
K A+
Sbjct: 221 KNAF 224
>gi|384135020|ref|YP_005517734.1| Ribonuclease III [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339289105|gb|AEJ43215.1| Ribonuclease III [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
Length = 241
Score = 37.7 bits (86), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 70/172 (40%), Gaps = 29/172 (16%)
Query: 65 FLHFTSPPPPPPPNVQCRYKSV----LQNYARRKNLDSPLYSSIREGPAHACSFKARVTI 120
FL+ T P P + R V L +A+R + D Y + G + ++R +
Sbjct: 61 FLYRTYPKMPEGELTRMRAAIVCEASLVRFAKRLSFDQ--YIRLGRGEERSGG-RSRPAL 117
Query: 121 DGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAI--FLYAHVSMYLWD--DGVFYK 176
FE+ L +L D EA+ F++AH+ YL D G+ YK
Sbjct: 118 LADVFEAF-----------------LGALYLDQGLEAVRQFVHAHMVPYLPDVSAGLDYK 160
Query: 177 NVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKK 227
L EL R PV + G H F+ VE+ GEV GR+KK+
Sbjct: 161 TALQELVQQRHQTPVRYVIVEERGPAHAREFVVQVELGGEVRGVGIGRSKKE 212
>gi|326330626|ref|ZP_08196930.1| ribonuclease III [Nocardioidaceae bacterium Broad-1]
gi|325951467|gb|EGD43503.1| ribonuclease III [Nocardioidaceae bacterium Broad-1]
Length = 183
Score = 37.7 bits (86), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKK 227
G+ +K L EL+ L VP Y G HM TF + V V +++ GR+KK+
Sbjct: 107 GLDWKTSLQELAAERALGVPEYVITDEGPDHMKTFTAKVRVGDQLYGNGVGRSKKE 162
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.132 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,837,088,793
Number of Sequences: 23463169
Number of extensions: 236264013
Number of successful extensions: 1029640
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 804
Number of HSP's that attempted gapping in prelim test: 1026066
Number of HSP's gapped (non-prelim): 3651
length of query: 365
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 221
effective length of database: 8,980,499,031
effective search space: 1984690285851
effective search space used: 1984690285851
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 77 (34.3 bits)