BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038761
(365 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5N8Z0|DRB1_ORYSJ Double-stranded RNA-binding protein 1 OS=Oryza sativa subsp.
japonica GN=DRB1 PE=2 SV=1
Length = 441
Score = 172 bits (435), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 110/248 (44%), Positives = 149/248 (60%), Gaps = 13/248 (5%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHS-SVSCKSSKESQND 59
MYK+++QELC Q+RW+ P Y+ G H P F ++VSVNG+ F + + +S+KE+ N
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60
Query: 60 AAKLAFLHFTSPPPPPPPNV---QCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKA 116
AAK AF H +S P PPPP Q YKS LQ YA++K P Y +IREGP HA FK+
Sbjct: 61 AAKAAFDHLSSLPLPPPPPPSENQSSYKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKS 120
Query: 117 RVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYK 176
VT+DG FES E+F +K+AE AAAK+AL SL QE A S + + YK
Sbjct: 121 VVTVDGKAFESPEYFHTVKEAESAAAKLALMSLP----QE-----ASSSEQVPVQPLSYK 171
Query: 177 NVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
N+L EL+ + G +P+Y T G+ +P F S V F G+ TKK+AEM AA+VA
Sbjct: 172 NLLQELAQKHGFSLPVYSTTSDGSVQVPMFKSTVVFQDGSFQGEPANTKKQAEMNAARVA 231
Query: 237 YTALIERK 244
+ +R+
Sbjct: 232 FQHFEDRR 239
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 35/50 (70%), Gaps = 4/50 (8%)
Query: 312 AKRATVTSS----YLLCNRVRVYTRIPDIAFPKGITLMPISEDKWVAVSL 357
A +TV+S+ LL NRV+VY R PD+ P+G T++P S+D WVAVSL
Sbjct: 387 ASASTVSSTGCGCSLLTNRVQVYPRRPDLVLPEGATVLPFSDDVWVAVSL 436
>sp|Q8H1D4|DRB4_ARATH Double-stranded RNA-binding protein 4 OS=Arabidopsis thaliana
GN=DBR4 PE=1 SV=1
Length = 355
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/158 (46%), Positives = 93/158 (58%), Gaps = 14/158 (8%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK LQ YA + NL+ P+Y++ REGP HA F+ VT G TF+S EFF LK AEHAAA
Sbjct: 5 YKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAAA 64
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
K+A+ SL E I V YKN+L E++ +E +P Y T G H
Sbjct: 65 KIAVASLTPQS-PEGI-------------DVAYKNLLQEIAQKESSLLPFYATATSGPSH 110
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
PTF S VE G+VF G+ +TKK AEM AAKVA+ ++
Sbjct: 111 APTFTSTVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSI 148
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 81/149 (54%), Gaps = 4/149 (2%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
+YK ++Q Q LP Y+ ++G H PRF+ +V+ G +F SS + K +++ A
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 61 AKLAFLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTI 120
AK+A T P P + YK++LQ A++++ P Y++ GP+HA +F + V
Sbjct: 64 AKIAVASLT---PQSPEGIDVAYKNLLQEIAQKESSLLPFYATATSGPSHAPTFTSTVEF 120
Query: 121 DGHTFESLEFFKNLKQAEHAAAKVALFSL 149
G F S E K K AE +AAKVA S+
Sbjct: 121 AGKVF-SGEEAKTKKLAEMSAAKVAFMSI 148
>sp|Q0DKP4|DRB2_ORYSJ Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp.
japonica GN=DRB2 PE=2 SV=1
Length = 593
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 91/158 (57%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ IREGP HA FKA V +G TFES F L+ AEHAAA
Sbjct: 2 YKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL L+ ++ + + D+ YKN+L E + R GL +P+Y TI+ G H
Sbjct: 62 EVALNELSKRGPSSSL------AAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P F VE+ G F G G+TKK+A+ AA A++ L
Sbjct: 116 TPVFTCTVELAGMTFTGNPGKTKKQAQKNAAMAAWSEL 153
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y+ +++G DH PRFK++V+ NG +F S C + + +++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A + P ++ + YK++LQ A R L P+Y++IR GP H
Sbjct: 61 AEVALNELSK--RGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPV 118
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + G TF K KQA+ AA A L
Sbjct: 119 FTCTVELAGMTFTG-NPGKTKKQAQKNAAMAAWSEL 153
>sp|Q9SKN2|DRB2_ARATH Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana
GN=DRB2 PE=1 SV=1
Length = 434
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 91/158 (57%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ IREGP HA FKA V +G FES ++ L+QAEH+AA
Sbjct: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL +L+ ++ + + D+ YKN+L E++ R G P+P Y T + G H
Sbjct: 62 EVALNALSNRGPSHSL------AARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P F VE+ G F G + KK+AE AA A+++L
Sbjct: 116 QPVFTGTVELAGITFTGDPAKNKKQAEKNAAMAAWSSL 153
Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 10/156 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y+ +++G DH PRFK++V+ NG F S C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-------YKSVLQNYARRKNLDSPLYSSIREGPAHACS 113
A++A ++ P ++ R YK++LQ A+R P Y++ R G H
Sbjct: 61 AEVALNALSN--RGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPV 118
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V + G TF + KN KQAE AA A SL
Sbjct: 119 FTGTVELAGITFTG-DPAKNKKQAEKNAAMAAWSSL 153
>sp|Q8GY79|DRB5_ARATH Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana
GN=DRB5 PE=1 SV=1
Length = 393
Score = 118 bits (296), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 95/158 (60%), Gaps = 6/158 (3%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ IREGP HA FKA V +G FES + L+QAEHAAA
Sbjct: 2 YKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+V+L L+ +++ + + D+ YKN+L E + R GL +P+Y +++ G+ H
Sbjct: 62 EVSLNVLSSRVPSKSL------TAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P F VE+ G F G++ +TKK+AE AA A+++L
Sbjct: 116 FPGFSCTVELAGMTFTGESAKTKKQAEKNAAIAAWSSL 153
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 85/154 (55%), Gaps = 6/154 (3%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + ++LP Y+ +++G DH PRFK+SV+ NG F S C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-----YKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
A+++ +S P + YK++LQ A R LD P+Y+S+R G H F
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V + G TF E K KQAE AA A SL
Sbjct: 121 CTVELAGMTFTG-ESAKTKKQAEKNAAIAAWSSL 153
>sp|Q9LJF5|DRB3_ARATH Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana
GN=DRB3 PE=2 SV=1
Length = 359
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 99/171 (57%), Gaps = 8/171 (4%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R P Y+ REGP HA FKA V +G FES + L+QAEH+AA
Sbjct: 2 YKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL +L+ +++ + + D+ YKN+L E + R GL +P+Y +++ G H
Sbjct: 62 EVALSALSSKGPSKSL------TARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLPFHG 253
+PTF VE+ G F G++ +TKK+AE AA A+ +L RK+ P G
Sbjct: 116 IPTFSCTVELAGMSFNGESAKTKKQAEKNAAIAAWFSL--RKMPRLDPLRG 164
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 87/154 (56%), Gaps = 6/154 (3%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + +SLP Y+ ++G DH PRFK+SV+ NG F S C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-----YKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
A++A +S P + YK++LQ A R LD P+Y+S+R GP H +F
Sbjct: 61 AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V + G +F E K KQAE AA A FSL
Sbjct: 121 CTVELAGMSFNG-ESAKTKKQAEKNAAIAAWFSL 153
>sp|B7E321|DRB5_ORYSJ Double-stranded RNA-binding protein 5 OS=Oryza sativa subsp.
japonica GN=DRB5 PE=2 SV=1
Length = 404
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 97/182 (53%), Gaps = 16/182 (8%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R P Y REGP HA FKA VT +G TF+ L+QAEHAAA
Sbjct: 2 YKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL L+ ++ + + D+ YKN+L E + R GL +P+Y T++ G H
Sbjct: 62 EVALARLSLRGPSSSL------TARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERK-------LIFSLPF---H 252
P F S VE+ G F G +TKK AE AA A+++L + L+F L + H
Sbjct: 116 SPVFSSTVELAGMSFAGDPAKTKKHAEKNAAMAAWSSLKQSNIRTTVSPLVFDLVWIVCH 175
Query: 253 GG 254
GG
Sbjct: 176 GG 177
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 6/163 (3%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
MYK ++QEL + +SLP Y ++G DH PRFK++V+ NG +F +C + +++++ A
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 61 AKLAFLHFTSPPPPPPPNVQCR-----YKSVLQNYARRKNLDSPLYSSIREGPAHACSFK 115
A++A + P + YK++LQ A R L P+Y+++R GP H+ F
Sbjct: 61 AEVALARLSLRGPSSSLTARVLDETGVYKNLLQETAHRAGLKLPVYTTVRSGPGHSPVFS 120
Query: 116 ARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAI 158
+ V + G +F + K K AE AA A SL + + +
Sbjct: 121 STVELAGMSFAG-DPAKTKKHAEKNAAMAAWSSLKQSNIRTTV 162
>sp|Q9AV50|DRB6_ORYSJ Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp.
japonica GN=DRB6 PE=2 SV=1
Length = 514
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 97/164 (59%), Gaps = 8/164 (4%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
YK+ LQ A+R + P Y+ +REGP HA FKA V +G FES FF L+QAEHAAA
Sbjct: 2 YKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAAA 61
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL +LA Y+ + L + GV YKN+L E++ R G P+P Y T + G H
Sbjct: 62 EVALAALARRGPS-----YSLAARILDETGV-YKNLLQEVAQRVGAPLPSYTTERSGLGH 115
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLI 246
+P F VE+ G F G + KK+AE AA A+++L R+L+
Sbjct: 116 LPVFTCTVELAGITFTGDPAKNKKQAEKNAASAAWSSL--RQLV 157
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 79/173 (45%), Gaps = 28/173 (16%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHS-------------- 46
MYK ++QEL + ++LP Y+ +++G DH PRFK++V+ NG F S
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60
Query: 47 SVSCKSSKESQNDAAKLA--FLHFTSPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSI 104
+ ++ + + LA L T YK++LQ A+R P Y++
Sbjct: 61 AEVALAALARRGPSYSLAARILDETG-----------VYKNLLQEVAQRVGAPLPSYTTE 109
Query: 105 REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEA 157
R G H F V + G TF + KN KQAE AA A SL QEA
Sbjct: 110 RSGLGHLPVFTCTVELAGITFTG-DPAKNKKQAEKNAASAAWSSLRQLVRQEA 161
Score = 35.8 bits (81), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 174 FYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVF 217
YKN L EL+ R +P Y ++ G H P F + V +GE F
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQF 44
>sp|Q0IV63|DRB7_ORYSJ Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp.
japonica GN=DRB7 PE=2 SV=1
Length = 473
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 86/158 (54%), Gaps = 8/158 (5%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P Y + +EGP+H FK+ V I+ +++SL F N K AE +AA
Sbjct: 34 FKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAA 93
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL + + A+ ++ + KN+L E + + +P Y K +
Sbjct: 94 EVALMEIVKS-------IPANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGL 146
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P FI VE+ G + G A RTKK AE+KAA+ A A+
Sbjct: 147 AP-FICTVEIGGIQYIGAAARTKKDAEIKAARTALLAI 183
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 10/155 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + P Y T K+G H+P FKS+V +N S+ S + K ++ A
Sbjct: 33 VFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 61 AKLAFLHFTSPPPPPP--PNVQ----CRYKSVLQNYARRKNLDSPLYSSIREGPAHACSF 114
A++A + P P VQ C K++LQ YA++ N P Y + A F
Sbjct: 93 AEVALMEIVKSIPANANIPAVQETGLC--KNLLQEYAQKMNYAIPSYICTKSASGLA-PF 149
Query: 115 KARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V I G + + K AE AA+ AL ++
Sbjct: 150 ICTVEIGGIQYIGA-AARTKKDAEIKAARTALLAI 183
>sp|Q0IQN6|DRB8_ORYSJ Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp.
japonica GN=DRB8 PE=2 SV=1
Length = 424
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 86/158 (54%), Gaps = 8/158 (5%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P Y + +EGP+H FK+ V I+ +++SL F N K AE +AA
Sbjct: 34 FKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAA 93
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL + + A+ ++ + KN+L E + + +P Y K +
Sbjct: 94 EVALMEIVKS-------IPANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGL 146
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P FI VE+ G + G A RTKK AE+KAA+ A A+
Sbjct: 147 AP-FICTVEIGGIQYIGAAARTKKDAEIKAARTALLAI 183
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 10/155 (6%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + P Y T K+G H+P FKS+V +N S+ S + K ++ A
Sbjct: 33 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 61 AKLAFLHFTSPPPPPP--PNVQ----CRYKSVLQNYARRKNLDSPLYSSIREGPAHACSF 114
A++A + P P VQ C K++LQ YA++ N P Y + A F
Sbjct: 93 AEVALMEIVKSIPANANIPAVQETGLC--KNLLQEYAQKMNYAIPSYICTKSASGLA-PF 149
Query: 115 KARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
V I G + + K AE AA+ AL ++
Sbjct: 150 ICTVEIGGIQYIGA-AARTKKDAEIKAARTALLAI 183
>sp|O04492|DRB1_ARATH Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana
GN=DRB1 PE=1 SV=1
Length = 419
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 87/159 (54%), Gaps = 7/159 (4%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P+Y ++EGP+H F++ V +DG + SL F N K AE +AA
Sbjct: 16 FKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAA 75
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGA-P 201
+VAL LA ++ L VS + + G KN+L E + + +PLY+ K
Sbjct: 76 EVALRELA-----KSSELSQCVSQPVHETG-LCKNLLQEYAQKMNYAIPLYQCQKVETLG 129
Query: 202 HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
+ F VE+ G + G A RTKK AE+ A + A A+
Sbjct: 130 RVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAI 168
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 7/158 (4%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + + P Y +K+G H F+S+V ++G+ ++S + K ++ A
Sbjct: 15 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 74
Query: 61 AKLAFLHFT-----SPPPPPPPNVQCRYKSVLQNYARRKNLDSPLYSSIR-EGPAHACSF 114
A++A S P + K++LQ YA++ N PLY + E F
Sbjct: 75 AEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQF 134
Query: 115 KARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACD 152
V I G + + K AE +A + AL ++ D
Sbjct: 135 TCTVEIGGIKYTGA-ATRTKKDAEISAGRTALLAIQSD 171
>sp|Q0DJA3|DRB3_ORYSJ Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp.
japonica GN=DRB3 PE=2 SV=1
Length = 437
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 85/158 (53%), Gaps = 8/158 (5%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+KS LQ YA++ L +P Y + +EGP+H FK+ V I+ ++ SL F N K AE +AA
Sbjct: 36 FKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSAA 95
Query: 143 KVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPH 202
+VAL + + A+ ++ + KN+L E + + +P Y K +
Sbjct: 96 EVALMEIVKS-------IPANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKPASGL 148
Query: 203 MPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P F+ VE+ G + G A RTKK AE+KAA+ A A+
Sbjct: 149 AP-FLCTVEIGGIQYIGAAARTKKDAEIKAARTALLAI 185
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 12/156 (7%)
Query: 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
++K+++QE + P Y T K+G H+P FKS+V +N S+ S + K ++ A
Sbjct: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94
Query: 61 AKLAFLHFTSPPPPPP--PNVQ----CRYKSVLQNYARRKNLDSPLYSSIREGPAHACS- 113
A++A + P P VQ C K++LQ YA++ N P Y + PA +
Sbjct: 95 AEVALMEIVKSIPANANIPAVQETGLC--KNLLQEYAQKMNYAIPSYICTK--PASGLAP 150
Query: 114 FKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
F V I G + + K AE AA+ AL ++
Sbjct: 151 FLCTVEIGGIQYIGA-AARTKKDAEIKAARTALLAI 185
>sp|Q6YW64|DRB4_ORYSJ Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp.
japonica GN=DRB4 PE=2 SV=1
Length = 312
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 79/161 (49%), Gaps = 3/161 (1%)
Query: 81 CRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHA 140
C YKS LQ Y ++ N P+Y + +G H FK+ V +DG F S + +K AE
Sbjct: 37 CNYKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQD 96
Query: 141 AAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGA 200
AAKVA +L + +E V + D VF K++LHE + + P Y K
Sbjct: 97 AAKVAYDTLL--ERKETETDDTDVFELIDQDVVFSKSILHEYTTKTKTDQPEYSVTKTEG 154
Query: 201 PHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALI 241
P ++S V G + G A R KK AE KAA+ A +L+
Sbjct: 155 SVTP-YVSSVSFAGHTYTGGAARNKKDAEQKAARAAVKSLL 194
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 11/162 (6%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
YK+K+QE Q LP Y T G H +FKS+V V+G F S+ + K+++ DAA
Sbjct: 39 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAA 98
Query: 62 KLAFLHFTSPPPPPPPNVQCRY---------KSVLQNYARRKNLDSPLYSSIREGPAHAC 112
K+A+ + KS+L Y + D P Y S+ +
Sbjct: 99 KVAYDTLLERKETETDDTDVFELIDQDVVFSKSILHEYTTKTKTDQPEY-SVTKTEGSVT 157
Query: 113 SFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDF 154
+ + V+ GHT+ + +N K AE AA+ A+ SL ++
Sbjct: 158 PYVSSVSFAGHTY-TGGAARNKKDAEQKAARAAVKSLLATNY 198
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGK-AGRTKKKAEMKAA 233
YK+ L E + +P+Y T G H F S V VDGE F R K AE AA
Sbjct: 39 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAA 98
Query: 234 KVAYTALIERK 244
KVAY L+ERK
Sbjct: 99 KVAYDTLLERK 109
>sp|Q5YS08|RNC_NOCFA Ribonuclease 3 OS=Nocardia farcinica (strain IFM 10152) GN=rnc PE=3
SV=1
Length = 240
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 36/69 (52%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ GL VP YE G H F + + G + GR+KK+AE K
Sbjct: 168 GLDWKTSLQELTAERGLGVPSYEISSTGPDHDKEFTATTVIGGRAYGQGVGRSKKEAEQK 227
Query: 232 AAKVAYTAL 240
AA AY AL
Sbjct: 228 AAGAAYQAL 236
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL ++ +P Y G DHD F ++ + G ++ V +S KE++ AA
Sbjct: 171 WKTSLQELTAERGLGVPSYEISSTGPDHDKEFTATTVIGGRAYGQGVG-RSKKEAEQKAA 229
Query: 62 KLAFLHFTS 70
A+ T+
Sbjct: 230 GAAYQALTA 238
>sp|Q82JT9|RNC_STRAW Ribonuclease 3 OS=Streptomyces avermitilis (strain ATCC 31267 / DSM
46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680)
GN=rnc PE=3 SV=1
Length = 276
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 172 GLDWKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 231
Query: 232 AAKVAYTAL 240
AA+ A+ A+
Sbjct: 232 AAESAWRAI 240
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 175 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 233
Query: 62 KLAF 65
+ A+
Sbjct: 234 ESAW 237
>sp|Q9ZBQ7|RNC_STRCO Ribonuclease 3 OS=Streptomyces coelicolor (strain ATCC BAA-471 /
A3(2) / M145) GN=rnc PE=1 SV=2
Length = 276
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ EGL VP Y + G H TF + V G + GR+KK+AE +
Sbjct: 182 GLDWKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTGTGRSKKEAEQQ 241
Query: 232 AAKVAYTAL 240
AA+ A+ ++
Sbjct: 242 AAESAWRSI 250
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH+ F ++ V G+S+ + + +S KE++ AA
Sbjct: 185 WKTSLQELTATEGLGVPEYLVTETGPDHEKTFTAAARVGGVSYGTG-TGRSKKEAEQQAA 243
Query: 62 KLAF 65
+ A+
Sbjct: 244 ESAW 247
>sp|Q47S78|RNC_THEFY Ribonuclease 3 OS=Thermobifida fusca (strain YX) GN=rnc PE=3 SV=1
Length = 240
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ E L VP Y + G H TF + V V G+ + GR+KK+AE +
Sbjct: 161 GLDWKTSLQELTAAELLGVPEYVVEESGPDHQKTFRATVRVAGQTYGSGEGRSKKEAEQQ 220
Query: 232 AAKVAYTAL 240
AA+ A+ A+
Sbjct: 221 AAESAWKAI 229
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y + G DH F+++V V G ++ S +S KE++ AA
Sbjct: 164 WKTSLQELTAAELLGVPEYVVEESGPDHQKTFRATVRVAGQTYGSG-EGRSKKEAEQQAA 222
Query: 62 KLAF 65
+ A+
Sbjct: 223 ESAW 226
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
+K+ LQ + L P Y GP H +F+A V + G T+ S E ++ K+AE AA
Sbjct: 164 WKTSLQELTAAELLGVPEYVVEESGPDHQKTFRATVRVAGQTYGSGE-GRSKKEAEQQAA 222
Query: 143 KVA 145
+ A
Sbjct: 223 ESA 225
>sp|Q73NX5|RNC_TREDE Ribonuclease 3 OS=Treponema denticola (strain ATCC 35405 / CIP
103919 / DSM 14222) GN=rnc PE=3 SV=1
Length = 246
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK++L EL ++ VP YE K P H TF V ++G+V+ +G+TKK+AE A
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSINGKVYGPLSGKTKKEAEQSVA 231
Query: 234 KVAYTAL 240
KVAY L
Sbjct: 232 KVAYENL 238
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YK+ +QEL +K ++P+Y K G DHD F SVS+NG + +S K+ KE++
Sbjct: 172 YKSLLQELVQKKFKTVPKYELKKASGPDHDRTFWFSVSING-KVYGPLSGKTKKEAEQSV 230
Query: 61 AKLAFLHFTS 70
AK+A+ + S
Sbjct: 231 AKVAYENLCS 240
>sp|Q6AFJ4|RNC_LEIXX Ribonuclease 3 OS=Leifsonia xyli subsp. xyli (strain CTCB07) GN=rnc
PE=3 SV=1
Length = 237
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%)
Query: 176 KNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKV 235
K L E + G P+Y I G H TF + V+V G V G +KK+AEM AA
Sbjct: 163 KTSLQEAAAHHGAGQPVYTVINTGPDHSKTFHATVDVGGLVTASGEGTSKKQAEMAAALS 222
Query: 236 AYTALIERK 244
A+TAL +
Sbjct: 223 AWTALTNHR 231
Score = 36.2 bits (82), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Query: 55 ESQNDAAKLAFLHFTSPPPPPPPNVQCRY--KSVLQNYARRKNLDSPLYSSIREGPAHAC 112
++ D A L P P K+ LQ A P+Y+ I GP H+
Sbjct: 132 DAGGDEATALVLRLIGPLLADPDRFGAAMDPKTSLQEAAAHHGAGQPVYTVINTGPDHSK 191
Query: 113 SFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSL 149
+F A V + G S E KQAE AAA A +L
Sbjct: 192 TFHATVDVGGLVTASGEGTSK-KQAEMAAALSAWTAL 227
>sp|P78563|RED1_HUMAN Double-stranded RNA-specific editase 1 OS=Homo sapiens GN=ADARB1
PE=1 SV=1
Length = 741
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYTLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>sp|P51400|RED1_RAT Double-stranded RNA-specific editase 1 OS=Rattus norvegicus
GN=Adarb1 PE=1 SV=1
Length = 711
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYMLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>sp|Q91ZS8|RED1_MOUSE Double-stranded RNA-specific editase 1 OS=Mus musculus GN=Adarb1
PE=1 SV=1
Length = 711
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 173 VFYKNVLHELS-LREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V KN L +L+ ++ GL L + G H P F+ VEV+G+VF G +G TKKKA++
Sbjct: 77 VLPKNALMQLNEIKPGLQYMLLS--QTGPVHAPLFVMSVEVNGQVFEG-SGPTKKKAKLH 133
Query: 232 AAKVAYTALIERKLIFSLPFHGGRSCSIGSITHTVKAD 269
AA+ A + ++ GR+ S+ + + +AD
Sbjct: 134 AAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTSDQAD 171
>sp|Q9NS39|RED2_HUMAN Double-stranded RNA-specific editase B2 OS=Homo sapiens GN=ADARB2
PE=1 SV=1
Length = 739
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 176 KNVLHEL-SLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
KN L +L LR GL Y T+ + G H P F VEV+G F G G TKKKA+M+AA
Sbjct: 127 KNALVQLHELRPGLQ---YRTVSQTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAA 182
Query: 234 KVAYTALIE 242
++A + ++
Sbjct: 183 ELALRSFVQ 191
Score = 32.7 bits (73), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 11 HQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS 70
H+ R L + + G H P F +V VNGL+F + K K+++ AA+LA F
Sbjct: 134 HELRPGLQYRTVSQTGPVHAPVFAVAVEVNGLTFEGTGPTK--KKAKMRAAELALRSFVQ 191
Query: 71 PP 72
P
Sbjct: 192 FP 193
>sp|B2A2N1|RNC_NATTJ Ribonuclease 3 OS=Natranaerobius thermophilus (strain ATCC BAA-1301
/ DSM 18059 / JW/NM-WN-LF) GN=rnc PE=3 SV=1
Length = 230
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKT +QEL + P+Y +K+ G DHD F + V +N S KS KE++ +A
Sbjct: 162 YKTMIQELVQDRYGDPPKYQIVKESGPDHDKSFVAEVQINN-EVVGRGSGKSKKEAEQNA 220
Query: 61 AKLAF 65
A AF
Sbjct: 221 AHFAF 225
>sp|B7GGE9|RNC_ANOFW Ribonuclease 3 OS=Anoxybacillus flavithermus (strain DSM 21510 /
WK1) GN=rnc PE=3 SV=1
Length = 238
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK+ L E R+G V Y+ ++ P H F+S V ++GE GR+KK+AE +AA
Sbjct: 166 YKSQLQEFVQRDGSGVLEYKILQERGPAHNKEFVSRVSLNGEELGVGVGRSKKEAEQRAA 225
Query: 234 KVAYTAL 240
++A L
Sbjct: 226 QMALAKL 232
>sp|O69469|RNC_MYCLE Ribonuclease 3 OS=Mycobacterium leprae (strain TN) GN=rnc PE=3 SV=1
Length = 238
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%)
Query: 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
G+ +K L EL+ G+ VP Y G H F ++V V + G +KK+AE K
Sbjct: 159 GLDWKTSLQELTAARGMGVPSYVVTSTGPDHDKEFTAVVVVMDTEYGSGIGHSKKEAEQK 218
Query: 232 AAKVAYTAL 240
AA A+ AL
Sbjct: 219 AASAAWKAL 227
Score = 38.1 bits (87), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
+KT +QEL + +P Y G DHD F + V V + S + S KE++ AA
Sbjct: 162 WKTSLQELTAARGMGVPSYVVTSTGPDHDKEFTAVVVVMDTEYGSGIG-HSKKEAEQKAA 220
Query: 62 KLAF 65
A+
Sbjct: 221 SAAW 224
>sp|Q9KA05|RNC_BACHD Ribonuclease 3 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM
18197 / FERM 7344 / JCM 9153 / C-125) GN=rnc PE=3 SV=1
Length = 263
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 148 SLACDDFQEAIFLYAHVSMY-LWDDGVF-----YKNVLHELSLREGLPVPLYETIKCGAP 201
+L D +A++L+ ++Y +G F +K+ L E R+ L YE ++ P
Sbjct: 158 ALYLDQGMDAVYLFLERTIYPKISEGAFSHMMDFKSQLQEFIQRDNLGHIHYEIVQERGP 217
Query: 202 -HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERK 244
H F+S V ++ E GR+KK+AE AA+ A L ++K
Sbjct: 218 AHNREFVSEVVLNNETLGVGTGRSKKEAEQHAAQQALITLSQKK 261
>sp|Q8Y691|RNC_LISMO Ribonuclease 3 OS=Listeria monocytogenes serovar 1/2a (strain ATCC
BAA-679 / EGD-e) GN=rnc PE=3 SV=1
Length = 229
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 173 VFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V YK L E+ R+ + Y+ + + G H F + V V+G+V +GRTKK+AE
Sbjct: 158 VDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQS 217
Query: 232 AAKVAYTALIER 243
AA+ A LI R
Sbjct: 218 AAQFAINKLIHR 229
>sp|Q68SB1|STAU2_RAT Double-stranded RNA-binding protein Staufen homolog 2 OS=Rattus
norvegicus GN=Stau2 PE=1 SV=1
Length = 571
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 151 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEIS 210
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 211 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 265
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 266 TTVLQELKKLPPLP 279
>sp|Q9PM40|RNC_CAMJE Ribonuclease 3 OS=Campylobacter jejuni subsp. jejuni serotype O:2
(strain NCTC 11168) GN=rnc PE=1 SV=1
Length = 224
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKTK+QE+ K P+Y T++ G DH +F+ ++ ++G +++ S KE+Q A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAG-SKKEAQQMA 213
Query: 61 AKLAF 65
AK+A
Sbjct: 214 AKIAL 218
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK L E++ + P YET++ P H+ F + +DG+ +KK+A+ AA
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAA 214
Query: 234 KVAYTAL 240
K+A L
Sbjct: 215 KIALEKL 221
>sp|C3M8S4|RNC_RHISN Ribonuclease 3 OS=Rhizobium sp. (strain NGR234) GN=rnc PE=3 SV=1
Length = 239
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 3 KTKVQELCHQKRWSLPRYSTM-KDGADHDPRFKSSVSVNGLS 43
KT++QE H K + PRY T + G DHDPRF +V V+G++
Sbjct: 164 KTELQEWAHAKFGAAPRYRTDDRSGPDHDPRFTVTVEVDGIA 205
>sp|A8FNU7|RNC_CAMJ8 Ribonuclease 3 OS=Campylobacter jejuni subsp. jejuni serotype O:6
(strain 81116 / NCTC 11828) GN=rnc PE=3 SV=1
Length = 224
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKTK+QE+ K P+Y T++ G DH +F+ ++ ++G +++ S KE+Q A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAG-SKKEAQQMA 213
Query: 61 AKLAF 65
AK+A
Sbjct: 214 AKIAL 218
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK L E++ + P YET++ P H+ F + +DG+ +KK+A+ AA
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAA 214
Query: 234 KVAYTAL 240
K+A L
Sbjct: 215 KIALEKL 221
>sp|Q5HSF8|RNC_CAMJR Ribonuclease 3 OS=Campylobacter jejuni (strain RM1221) GN=rnc PE=3
SV=1
Length = 224
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKTK+QE+ K P+Y T++ G DH +F+ ++ ++G +++ S KE+Q A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAG-SKKEAQQMA 213
Query: 61 AKLAF 65
AK+A
Sbjct: 214 AKIAL 218
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK L E++ + P YET++ P H+ F + +DG+ +KK+A+ AA
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAA 214
Query: 234 KVAYTAL 240
K+A L
Sbjct: 215 KIALEKL 221
>sp|Q9NUL3|STAU2_HUMAN Double-stranded RNA-binding protein Staufen homolog 2 OS=Homo
sapiens GN=STAU2 PE=1 SV=1
Length = 570
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 113/278 (40%), Gaps = 44/278 (15%)
Query: 6 VQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLA 64
V EL R P+Y + + G H F +S+ ++ S S S K++Q A A
Sbjct: 13 VNELARFNRVQ-PQYKLLNERGPAHSKMFSVQLSLGEQTWESEGS--SIKKAQQAVANKA 69
Query: 65 FLHFTSPPP---PPPPNVQCRYKSV-----LQNYARRKNLDSPLYSSIREGPAHACSFKA 116
T P P PP NV S+ L A ++ + +Y + P +++A
Sbjct: 70 LTESTLPKPVQKPPKSNVNNNPGSITPTVELNGLAMKRG-EPAIYRPL--DPKPFPNYRA 126
Query: 117 RVTIDGH-----------------TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQE 156
G T + EFF K + A H AA AL +L + E
Sbjct: 127 NYNFRGMYNQRYHCPVPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPE 186
Query: 157 AIFLYAHVSMYLWDDGVFYKN---VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEV 212
+ DD K+ ++ E++L+ +PV +E IK G PHM +F++ V V
Sbjct: 187 RSPQNGESGKDMDDDKDANKSEISLVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV 245
Query: 213 DGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLP 250
GE G +KK ++ +A A T L E K + LP
Sbjct: 246 -GEFSAEGEGNSKKLSKKRA---ATTVLQELKKLPPLP 279
>sp|Q8CJ67|STAU2_MOUSE Double-stranded RNA-binding protein Staufen homolog 2 OS=Mus
musculus GN=Stau2 PE=1 SV=1
Length = 570
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 124 TFESLEFF---KNLKQAEHAAAKVALFSLACDDFQEAIFLYAHVSMYLWDDGVFYKN--- 177
T + EFF K + A H AA AL +L + E + DD K+
Sbjct: 151 TVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPEKSPQNGESGKEMDDDKDANKSEIS 210
Query: 178 VLHELSLREGLPVPLYETIK-CGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVA 236
++ E++L+ +PV +E IK G PHM +F++ V V GE G +KK ++ +A A
Sbjct: 211 LVFEIALKRNMPV-SFEVIKESGPPHMKSFVTRVSV-GEFSAEGEGNSKKLSKKRA---A 265
Query: 237 YTALIERKLIFSLP 250
T L E K + LP
Sbjct: 266 TTVLQELKKLPPLP 279
>sp|C5D8T6|RNC_GEOSW Ribonuclease 3 OS=Geobacillus sp. (strain WCH70) GN=rnc PE=3 SV=1
Length = 246
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 148 SLACDDFQEAIFLYAHVSMY-LWDDGVF-----YKNVLHELSLREGLPVPLYETIKCGAP 201
+L D +A+ + +++ D+G F +K+ L EL R+G+ V Y ++ P
Sbjct: 141 ALYLDQGMDAVMQFLGQTIFPKIDEGAFSHVMDFKSQLQELVQRDGIGVLEYSILEEKGP 200
Query: 202 -HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
H F+S V ++G+ G++KK+AE AA++A L
Sbjct: 201 AHNKEFVSRVSLNGQELGIGVGKSKKEAEQHAAQMALQKL 240
>sp|A7H5Y2|RNC_CAMJD Ribonuclease 3 OS=Campylobacter jejuni subsp. doylei (strain ATCC
BAA-1458 / RM4099 / 269.97) GN=rnc PE=3 SV=1
Length = 225
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 2 YKTKVQELCHQKRWSLPRYSTMKD-GADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDA 60
YKTK+QE+ K P+Y T++ G DH +F+ ++ ++G +++ S KE+Q A
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAG-SKKEAQQMA 213
Query: 61 AKLAF 65
AK+A
Sbjct: 214 AKIAL 218
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 175 YKNVLHELSLREGLPVPLYETIKCGAP-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233
YK L E++ + P YET++ P H+ F + +DG+ +KK+A+ AA
Sbjct: 155 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAA 214
Query: 234 KVAYTAL 240
K+A L
Sbjct: 215 KIALEKL 221
>sp|Q52698|RNC_RHOCA Ribonuclease 3 OS=Rhodobacter capsulatus GN=rnc PE=1 SV=1
Length = 228
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 176 KNVLHELSLREGLPVPLYETI-KCGAPHMPTF-ISMVEVDGEVFYGKAGRTKKKAEMKAA 233
K L E + GLP P YET+ + G H P F I++V GE +AG +K+ AE AA
Sbjct: 159 KTALQEWAQARGLPPPRYETLGRDGPDHAPQFRIAVVLASGETEEAQAG-SKRNAEQAAA 217
Query: 234 KVAYTALIER 243
K AL+ER
Sbjct: 218 K----ALLER 223
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 3 KTKVQELCHQKRWSLPRYSTM-KDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
KT +QE + PRY T+ +DG DH P+F+ +V + S + + SK + AA
Sbjct: 159 KTALQEWAQARGLPPPRYETLGRDGPDHAPQFRIAVVLA--SGETEEAQAGSKRNAEQAA 216
Query: 62 KLAFLH 67
A L
Sbjct: 217 AKALLE 222
>sp|Q92R47|RNC_RHIME Ribonuclease 3 OS=Rhizobium meliloti (strain 1021) GN=rnc PE=3 SV=1
Length = 238
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 3 KTKVQELCHQKRWSLPRYSTM-KDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
KT++QE H K P+Y T + G DHDPRF +V V+G++ + V Q A
Sbjct: 163 KTELQEWAHAKFGVAPKYRTDDRSGPDHDPRFTVTVEVDGIAPETGVDRSKRGAEQVAAM 222
Query: 62 KL 63
KL
Sbjct: 223 KL 224
>sp|Q65JQ5|RNC_BACLD Ribonuclease 3 OS=Bacillus licheniformis (strain DSM 13 / ATCC
14580) GN=rnc PE=3 SV=1
Length = 249
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
Query: 148 SLACDDFQEAI--FLYAHVSMYLWDDGVF-----YKNVLHELSLREGLPVPLYETIKCGA 200
+L D EA+ FL A+V + DDG F +K+ L E R+G + Y+ ++
Sbjct: 143 ALYLDQGLEAVVTFLKAYVFPKI-DDGAFSHVMDFKSQLQEFVQRDGRGILEYKILQEKG 201
Query: 201 P-HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
P H F + V + GEV +GR+KK+AE AA+ A L
Sbjct: 202 PAHNREFEANVSLKGEVLGVGSGRSKKEAEQHAAQEALAKL 242
Score = 32.3 bits (72), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
+KS LQ + +R Y ++E GPAH F+A V++ G + ++ K+AE A
Sbjct: 176 FKSQLQEFVQRDGRGILEYKILQEKGPAHNREFEANVSLKGEVL-GVGSGRSKKEAEQHA 234
Query: 142 AKVALFSL 149
A+ AL L
Sbjct: 235 AQEALAKL 242
>sp|Q5L0Q3|RNC_GEOKA Ribonuclease 3 OS=Geobacillus kaustophilus (strain HTA426) GN=rnc
PE=3 SV=1
Length = 246
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Query: 148 SLACDDFQEAIFLYAHVSMY-LWDDGVF-----YKNVLHELSLREGLPVPLYETIKCGAP 201
+L D +A+ + +M+ D+G F +K+ L EL R+G Y ++ P
Sbjct: 141 ALYLDQGMDAVIRFLEKTMFPKIDEGAFSHVMDFKSQLQELVQRDGSGTLEYAILEEKGP 200
Query: 202 -HMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240
H F++ V ++G+ GR+KK+AE AA++A L
Sbjct: 201 AHNKEFVARVALNGQELGIGVGRSKKEAEQHAAQMALETL 240
Score = 39.3 bits (90), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 83 YKSVLQNYARRKNLDSPLYSSIRE-GPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAA 141
+KS LQ +R + Y+ + E GPAH F ARV ++G + ++ K+AE A
Sbjct: 174 FKSQLQELVQRDGSGTLEYAILEEKGPAHNKEFVARVALNGQEL-GIGVGRSKKEAEQHA 232
Query: 142 AKVALFSLACDDFQ 155
A++AL +L D Q
Sbjct: 233 AQMALETLRAADQQ 246
>sp|Q2SL32|RNC_HAHCH Ribonuclease 3 OS=Hahella chejuensis (strain KCTC 2396) GN=rnc PE=3
SV=1
Length = 226
Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 84 KSVLQNYARRKNLDSPLYSSIR-EGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAA 142
K+ LQ Y + + L+ P Y I +G AHA +F R IDG + + + + AE AA
Sbjct: 156 KTRLQEYLQARQLNLPRYEVISVQGEAHAQTFHVRCEIDGLSDATEGTGSSRRVAEQKAA 215
Query: 143 KVALFSLACD 152
K AL +L D
Sbjct: 216 KQALLALGVD 225
Score = 35.8 bits (81), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 3 KTKVQELCHQKRWSLPRYSTMK-DGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAA 61
KT++QE ++ +LPRY + G H F ++GLS + + S + ++ AA
Sbjct: 156 KTRLQEYLQARQLNLPRYEVISVQGEAHAQTFHVRCEIDGLSDATEGTGSSRRVAEQKAA 215
Query: 62 KLAFL 66
K A L
Sbjct: 216 KQALL 220
>sp|Q9JI20|RED2_MOUSE Double-stranded RNA-specific editase B2 OS=Mus musculus GN=Adarb2
PE=2 SV=2
Length = 745
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 176 KNVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L L+ GL + + G H P F VEV+G F G G TKKKA+M+AA+
Sbjct: 127 KNALVQLHELKPGLQYRMVS--QTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAAE 183
Query: 235 VAYTALIE 242
+A + ++
Sbjct: 184 MALKSFVQ 191
>sp|A0AJR0|RNC_LISW6 Ribonuclease 3 OS=Listeria welshimeri serovar 6b (strain ATCC 35897
/ DSM 20650 / SLCC5334) GN=rnc PE=3 SV=1
Length = 229
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 173 VFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V YK L E+ R+ + Y+ + + G H F + V V+G+V +GRTKK+AE
Sbjct: 158 VDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQS 217
Query: 232 AAKVAYTALIER 243
AA+ A L R
Sbjct: 218 AAQFAINQLTHR 229
>sp|Q92AK3|RNC_LISIN Ribonuclease 3 OS=Listeria innocua serovar 6a (strain CLIP 11262)
GN=rnc PE=3 SV=1
Length = 229
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 173 VFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V YK L E+ R+ + Y+ + + G H F + V V+G+V +GRTKK+AE
Sbjct: 158 VDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQS 217
Query: 232 AAKVAYTALIER 243
AA+ A L R
Sbjct: 218 AAQFAINQLTHR 229
>sp|P97616|RED2_RAT Double-stranded RNA-specific editase B2 OS=Rattus norvegicus
GN=Adarb2 PE=2 SV=1
Length = 746
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 176 KNVLHEL-SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234
KN L +L L+ GL + + G H P F VEV+G F G G TKKKA+M+AA+
Sbjct: 128 KNALVQLHELKPGLQYRMVS--QTGPVHAPVFAVAVEVNGLTFEG-TGPTKKKAKMRAAE 184
Query: 235 VAYTALIE 242
+A + ++
Sbjct: 185 MALKSFVQ 192
>sp|B8DDU8|RNC_LISMH Ribonuclease 3 OS=Listeria monocytogenes serotype 4a (strain HCC23)
GN=rnc PE=3 SV=1
Length = 229
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 173 VFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V YK L E+ R+ + Y+ + + G H F + V V+G+V +GRTKK+AE
Sbjct: 158 VDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQS 217
Query: 232 AAKVAYTALIER 243
AA+ A L R
Sbjct: 218 AAQFAINQLTHR 229
>sp|Q71YL2|RNC_LISMF Ribonuclease 3 OS=Listeria monocytogenes serotype 4b (strain F2365)
GN=rnc PE=3 SV=1
Length = 229
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 173 VFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V YK L E+ R+ + Y+ + + G H F + V V+G+V +GRTKK+AE
Sbjct: 158 VDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQS 217
Query: 232 AAKVAYTALIER 243
AA+ A L R
Sbjct: 218 AAQFAINQLTHR 229
>sp|C1KWA4|RNC_LISMC Ribonuclease 3 OS=Listeria monocytogenes serotype 4b (strain
CLIP80459) GN=rnc PE=3 SV=1
Length = 229
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 173 VFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231
V YK L E+ R+ + Y+ + + G H F + V V+G+V +GRTKK+AE
Sbjct: 158 VDYKTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQS 217
Query: 232 AAKVAYTALIER 243
AA+ A L R
Sbjct: 218 AAQFAINQLTHR 229
>sp|Q28V23|RNC_JANSC Ribonuclease 3 OS=Jannaschia sp. (strain CCS1) GN=rnc PE=3 SV=1
Length = 227
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 84 KSVLQNYARRKNLDSPLYSSI-REGPAHACSFKARVTI-DGHTFESLEFFKNLKQAEHAA 141
K+ LQ +A+ + + P Y+ + R GP HA F+ RVT+ G E+ K +QAE A
Sbjct: 159 KTALQEWAQARGMAPPTYTEVARSGPDHAPVFRVRVTLSSGENAEAQA--KAKRQAEQQA 216
Query: 142 AKVALFSLACD 152
AK L LA +
Sbjct: 217 AKDLLAQLAGE 227
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,028,209
Number of Sequences: 539616
Number of extensions: 5613950
Number of successful extensions: 26700
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 212
Number of HSP's that attempted gapping in prelim test: 26272
Number of HSP's gapped (non-prelim): 564
length of query: 365
length of database: 191,569,459
effective HSP length: 119
effective length of query: 246
effective length of database: 127,355,155
effective search space: 31329368130
effective search space used: 31329368130
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)