Query 038761
Match_columns 365
No_of_seqs 245 out of 2543
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 03:01:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038761.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038761hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3732 Staufen and related do 100.0 5.1E-28 1.1E-32 230.6 16.7 193 50-246 2-215 (339)
2 KOG3732 Staufen and related do 99.9 1.9E-26 4E-31 219.9 13.9 235 2-243 40-335 (339)
3 PRK12371 ribonuclease III; Rev 99.6 7.9E-15 1.7E-19 137.5 16.0 144 81-243 84-232 (235)
4 PHA02701 ORF020 dsRNA-binding 99.6 7.3E-16 1.6E-20 136.8 8.4 68 1-70 109-177 (183)
5 COG0571 Rnc dsRNA-specific rib 99.6 1E-14 2.3E-19 136.1 15.2 146 79-243 80-232 (235)
6 cd00048 DSRM Double-stranded R 99.6 4.2E-15 9E-20 111.2 8.9 67 1-68 1-68 (68)
7 PHA02701 ORF020 dsRNA-binding 99.6 5.2E-15 1.1E-19 131.4 10.6 72 170-242 105-177 (183)
8 smart00358 DSRM Double-strande 99.6 4.3E-15 9.3E-20 111.2 8.5 66 2-69 1-67 (67)
9 PHA03103 double-strand RNA-bin 99.6 3.4E-15 7.3E-20 133.4 8.3 68 1-70 110-177 (183)
10 cd00048 DSRM Double-stranded R 99.6 1.1E-14 2.5E-19 108.8 9.9 67 174-240 1-68 (68)
11 PRK14718 ribonuclease III; Pro 99.6 2.5E-14 5.4E-19 142.4 15.2 145 79-242 70-222 (467)
12 PHA03103 double-strand RNA-bin 99.6 1.6E-14 3.5E-19 129.0 10.5 71 171-242 107-177 (183)
13 PF00035 dsrm: Double-stranded 99.6 2.5E-14 5.3E-19 107.4 9.8 66 175-240 1-67 (67)
14 PF00035 dsrm: Double-stranded 99.6 1.2E-14 2.6E-19 109.1 7.3 66 2-68 1-67 (67)
15 smart00358 DSRM Double-strande 99.5 3.4E-14 7.3E-19 106.3 9.6 65 175-240 1-66 (67)
16 PRK12372 ribonuclease III; Rev 99.5 1.3E-13 2.8E-18 136.5 15.8 145 79-242 70-222 (413)
17 PRK12371 ribonuclease III; Rev 99.5 2.3E-14 5.1E-19 134.3 8.7 69 1-70 162-231 (235)
18 COG0571 Rnc dsRNA-specific rib 99.5 1.5E-13 3.3E-18 128.3 8.5 70 1-71 162-232 (235)
19 PRK14718 ribonuclease III; Pro 99.4 2E-13 4.3E-18 136.0 8.6 70 1-71 152-223 (467)
20 PRK00102 rnc ribonuclease III; 99.4 4.5E-12 9.9E-17 118.0 13.8 142 82-242 80-228 (229)
21 PRK12372 ribonuclease III; Rev 99.4 7E-13 1.5E-17 131.4 8.5 69 1-70 152-222 (413)
22 TIGR02191 RNaseIII ribonucleas 99.4 7E-12 1.5E-16 115.9 12.5 140 82-240 74-220 (220)
23 PF14709 DND1_DSRM: double str 99.3 2.1E-12 4.6E-17 101.4 7.0 68 2-69 3-80 (80)
24 PRK00102 rnc ribonuclease III; 99.3 8E-12 1.7E-16 116.3 8.4 69 1-70 159-228 (229)
25 PF14709 DND1_DSRM: double str 99.3 1.3E-11 2.9E-16 96.9 7.0 68 174-241 2-80 (80)
26 TIGR02191 RNaseIII ribonucleas 99.2 2.4E-11 5.2E-16 112.3 8.6 67 1-68 153-220 (220)
27 KOG2777 tRNA-specific adenosin 99.2 4.4E-11 9.5E-16 122.1 9.6 123 18-154 10-157 (542)
28 KOG2777 tRNA-specific adenosin 99.1 2.1E-10 4.6E-15 117.1 10.3 135 99-246 10-158 (542)
29 KOG4334 Uncharacterized conser 99.1 4.6E-10 9.9E-15 111.8 10.6 176 78-258 372-576 (650)
30 KOG4334 Uncharacterized conser 98.8 2.7E-08 5.9E-13 99.4 10.7 144 2-150 377-557 (650)
31 KOG1817 Ribonuclease [RNA proc 98.6 2.7E-07 5.7E-12 91.5 11.4 112 130-242 379-503 (533)
32 KOG1817 Ribonuclease [RNA proc 98.4 8.7E-07 1.9E-11 87.9 7.6 69 1-70 428-503 (533)
33 KOG0921 Dosage compensation co 97.9 2.3E-05 5E-10 84.0 7.2 220 2-243 3-241 (1282)
34 KOG3769 Ribonuclease III domai 97.5 0.00014 3E-09 69.5 4.6 80 172-251 231-312 (333)
35 KOG3792 Transcription factor N 97.2 0.00055 1.2E-08 71.9 6.0 123 19-150 387-570 (816)
36 KOG3769 Ribonuclease III domai 97.2 0.00045 9.7E-09 66.1 4.5 68 2-70 234-303 (333)
37 KOG3792 Transcription factor N 96.7 0.0017 3.6E-08 68.4 4.4 130 105-242 399-571 (816)
38 PF03368 Dicer_dimer: Dicer di 96.4 0.024 5.2E-07 45.4 8.3 64 176-243 2-74 (90)
39 PF03368 Dicer_dimer: Dicer di 96.2 0.011 2.4E-07 47.3 5.8 65 84-153 2-75 (90)
40 PF14954 LIX1: Limb expression 95.1 0.055 1.2E-06 49.8 6.1 70 79-148 19-94 (252)
41 PF14954 LIX1: Limb expression 93.9 0.13 2.9E-06 47.3 5.8 70 171-240 19-95 (252)
42 KOG0921 Dosage compensation co 91.5 0.26 5.5E-06 54.1 5.0 71 82-153 2-72 (1282)
43 KOG2334 tRNA-dihydrouridine sy 88.6 0.16 3.5E-06 51.2 0.6 67 2-71 377-443 (477)
44 KOG2334 tRNA-dihydrouridine sy 84.5 0.44 9.4E-06 48.2 1.1 69 79-150 373-441 (477)
45 PF08029 HisG_C: HisG, C-termi 79.6 1.7 3.7E-05 33.6 2.6 21 337-357 23-45 (75)
46 PF02169 LPP20: LPP20 lipoprot 50.9 24 0.00051 27.4 3.9 29 214-242 12-40 (92)
47 TIGR03455 HisG_C-term ATP phos 44.0 14 0.00031 30.0 1.6 18 340-357 52-69 (100)
48 KOG0701 dsRNA-specific nucleas 29.4 41 0.00089 40.0 2.8 67 3-70 1517-1598(1606)
49 PF14657 Integrase_AP2: AP2-li 27.7 2E+02 0.0042 19.6 5.0 20 222-242 24-43 (46)
50 PF14600 CBM_5_12_2: Cellulose 27.1 31 0.00067 25.6 0.9 33 324-356 4-59 (62)
51 PF02169 LPP20: LPP20 lipoprot 24.8 57 0.0012 25.1 2.2 26 125-150 14-39 (92)
52 PRK03065 hutP anti-terminator 23.9 65 0.0014 28.1 2.4 10 348-357 116-125 (148)
53 COG1944 Uncharacterized conser 23.6 2.5E+02 0.0053 28.7 6.8 66 175-243 19-87 (398)
54 PF01436 NHL: NHL repeat; Int 21.7 49 0.0011 20.1 0.9 17 337-354 2-18 (28)
No 1
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=99.96 E-value=5.1e-28 Score=230.55 Aligned_cols=193 Identities=26% Similarity=0.251 Sum_probs=155.8
Q ss_pred ccCcchHHHHHHHHHHHhcCCCCCCC----CCCCc-cCcHHHHHHHHHHcCCCCCceeeec-cCCCCCcceEEEEEEcCe
Q 038761 50 CKSSKESQNDAAKLAFLHFTSPPPPP----PPNVQ-CRYKSVLQNYARRKNLDSPLYSSIR-EGPAHACSFKARVTIDGH 123 (365)
Q Consensus 50 g~SKK~Aeq~AA~~AL~~L~~~~~~~----~~~~~-~~~~s~L~E~~qk~~l~~P~Y~~~~-~Gp~h~~~F~~~v~I~g~ 123 (365)
|.....|+|+||..+|+.|.....+- ..... +.+++.|+|||.++++ .|.|++.+ +||.|.+.|+++|+++.
T Consensus 2 g~t~~~a~~daaa~al~~l~~~~~~~~~~~~~~~g~KS~IS~l~E~~~r~~~-~v~fevl~eeGp~H~~~fv~rvtvg~- 79 (339)
T KOG3732|consen 2 GKTMQQAKHDAAAKALQVLQNGLISEGVMLNADPGAKSPISLLQEYGLRRGL-TPVYEVLREEGPPHMPNFVFRVTVGE- 79 (339)
T ss_pred ccchhhhhccccccchhhccCCCcchhcccccCcccCChHHHHHHHHHHhCC-CcceeeeeccCCccCCCeEEEEEEee-
Confidence 67788999999999999987643211 11222 8899999999999998 46799884 89999999999999994
Q ss_pred EEEeccccccHHHHHHHHHHHHHHHhccCChhh-h---H--H-Hhh-hhc---c---cccCCCcchhhHHHHHHHhcCCC
Q 038761 124 TFESLEFFKNLKQAEHAAAKVALFSLACDDFQE-A---I--F-LYA-HVS---M---YLWDDGVFYKNVLHELSLREGLP 189 (365)
Q Consensus 124 ~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g~~~-~---~--~-~~~-~l~---~---~~~~~~~n~ks~LqE~~qk~~~~ 189 (365)
+.+.|.|++||.||+.||..+|..|+...+-. + . + .+. ... . .......|++++|+|+||+++|+
T Consensus 80 -~~a~GeG~sKK~AKh~AA~~~L~~lk~l~~l~~v~k~~~~~~~~~~~~~~~~q~~d~~~~~~~NPI~~L~e~~q~k~~k 158 (339)
T KOG3732|consen 80 -ITATGEGKSKKLAKHRAAEALLKELKKLPPLANVRKDSLKFAKMKSSGVKKDQPGDPEYGQVLNPIGRLQELAQAKKWK 158 (339)
T ss_pred -eEEecCCCchhHHHHHHHHHHHHHHhcCCCccccccCcccccccccCCccccCCCCcccccccChHHHHHHHHHHhCCC
Confidence 44567899999999999999999997554211 1 0 0 000 000 0 11135789999999999999999
Q ss_pred CCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhhccc
Q 038761 190 VPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLI 246 (365)
Q Consensus 190 ~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~~~~ 246 (365)
.|.|+++ +.|++|.++|++.|.+++. ..+|.|.|||.||++||..||..|...+++
T Consensus 159 ~P~yelv~E~G~~~~rEFv~q~sv~~~-~~~GkG~sKKiAKRnAAeamLe~l~~~~~~ 215 (339)
T KOG3732|consen 159 LPEYELVQESGVPHRREFVIQCSVENF-TEEGKGPSKKIAKRNAAEAMLESLGFVKPN 215 (339)
T ss_pred CCceEEEeccCCCccceEEEEEEecce-eeecCCchHHHHHHHHHHHHHHHhccCCCC
Confidence 9999988 8999999999999999985 579999999999999999999999977653
No 2
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=99.94 E-value=1.9e-26 Score=219.90 Aligned_cols=235 Identities=22% Similarity=0.220 Sum_probs=171.1
Q ss_pred hHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCCCCCCC----
Q 038761 2 YKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPPPPPP---- 76 (365)
Q Consensus 2 ~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~~~~~~---- 76 (365)
++|.|||+|.+++.. |.|++ .++||.|.+.|+++|.|.... ..| .|+|||.||+.||..+|..|...++.+.
T Consensus 40 ~IS~l~E~~~r~~~~-v~fevl~eeGp~H~~~fv~rvtvg~~~-a~G-eG~sKK~AKh~AA~~~L~~lk~l~~l~~v~k~ 116 (339)
T KOG3732|consen 40 PISLLQEYGLRRGLT-PVYEVLREEGPPHMPNFVFRVTVGEIT-ATG-EGKSKKLAKHRAAEALLKELKKLPPLANVRKD 116 (339)
T ss_pred hHHHHHHHHHHhCCC-cceeeeeccCCccCCCeEEEEEEeeeE-Eec-CCCchhHHHHHHHHHHHHHHhcCCCccccccC
Confidence 689999999999986 59999 779999999999999999655 355 9999999999999999999987443110
Q ss_pred ----------------C-----CCccCcHHHHHHHHHHcCCCCCceeee-ccCCCCCcceEEEEEEcCeEEEeccccccH
Q 038761 77 ----------------P-----NVQCRYKSVLQNYARRKNLDSPLYSSI-REGPAHACSFKARVTIDGHTFESLEFFKNL 134 (365)
Q Consensus 77 ----------------~-----~~~~~~~s~L~E~~qk~~l~~P~Y~~~-~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sK 134 (365)
+ ....||+++|+||||+++|++|.|+++ +.|.+|.+.|++.|++.+..-+ |.|.||
T Consensus 117 ~~~~~~~~~~~~~~~q~~d~~~~~~~NPI~~L~e~~q~k~~k~P~yelv~E~G~~~~rEFv~q~sv~~~~~~--GkG~sK 194 (339)
T KOG3732|consen 117 SLKFAKMKSSGVKKDQPGDPEYGQVLNPIGRLQELAQAKKWKLPEYELVQESGVPHRREFVIQCSVENFTEE--GKGPSK 194 (339)
T ss_pred cccccccccCCccccCCCCcccccccChHHHHHHHHHHhCCCCCceEEEeccCCCccceEEEEEEecceeee--cCCchH
Confidence 1 247899999999999999999999999 7799999999999999999875 589999
Q ss_pred HHHHHHHHHHHHHHhccCChhhh---------HHHh----------------hhhc-------ccccCCCcchhhHHHHH
Q 038761 135 KQAEHAAAKVALFSLACDDFQEA---------IFLY----------------AHVS-------MYLWDDGVFYKNVLHEL 182 (365)
Q Consensus 135 K~AK~~AA~~aL~~L~~~g~~~~---------~~~~----------------~~l~-------~~~~~~~~n~ks~LqE~ 182 (365)
|.||++||..||..|....+... ++.. ..++ ..+.....+|...+.+.
T Consensus 195 KiAKRnAAeamLe~l~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~s~~~s~~eel~~~k~~~~~~~~~~~~~~~~~~~~~ 274 (339)
T KOG3732|consen 195 KIAKRNAAEAMLESLGFVKPNKTPENLKVSLLKPASGRALGCSDKSLDNSEGEELSRLKACLKVIFNSAGLAYIKLLSEI 274 (339)
T ss_pred HHHHHHHHHHHHHHhccCCCCcCcccccccccccccCcCCccCccccccchhhhhhhhhhhhhhcccccccccccccccc
Confidence 99999999999999963321100 0000 0000 00011234444455555
Q ss_pred HHhcCCCCCeEEEEeeCCCCCCeEEEEEEECCEEEe--eEeccCHHHHHHHHHHHHHHHHHhh
Q 038761 183 SLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFY--GKAGRTKKKAEMKAAKVAYTALIER 243 (365)
Q Consensus 183 ~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~i~g~~~~--~G~G~SKK~Ae~~AA~~aL~~L~~~ 243 (365)
...+.+.. .|..... ..-...+.|.|..++...+ .|.+.|-..|+..||+.+|+.|..+
T Consensus 275 ~~e~~f~~-~y~d~~~-~t~sg~~~~~~e~s~~~~~~~~~s~~t~~~s~~~aa~~~L~yL~~~ 335 (339)
T KOG3732|consen 275 APENQFTV-TYPDIEE-LTLSGQNQCLVELSTSPATVCHGSSITPPSAQSEAAHNALEYLKIM 335 (339)
T ss_pred ccccchhe-ecchhHH-hhhhhHHHHHHHhcCCCceeeeccCCCCCcccchhHHHHHHHHHHH
Confidence 44444433 3332210 0123345555555554433 4678888999999999999999875
No 3
>PRK12371 ribonuclease III; Reviewed
Probab=99.63 E-value=7.9e-15 Score=137.53 Aligned_cols=144 Identities=20% Similarity=0.057 Sum_probs=108.6
Q ss_pred cCcHHHHHHHHHHcCCCCCceeeeccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccCChhhh-HH
Q 038761 81 CRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEA-IF 159 (365)
Q Consensus 81 ~~~~s~L~E~~qk~~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g~~~~-~~ 159 (365)
.+....|..+|.+.++ +.|-.. |+.-.. ..+....|-.|....|..+..+| +.|+..+ .+
T Consensus 84 lV~n~~La~ia~~lgL--~~~i~~--~~~~~~--------------~~~~~~~~ilad~~EAliGAiyl-D~G~~~a~~~ 144 (235)
T PRK12371 84 LVNAETCAAIADEIGL--HDLIRT--GSDVKK--------------LTGKRLLNVRADVVEALIAAIYL-DGGLEAARPF 144 (235)
T ss_pred HhChHHHHHHHHHCCc--HHHhcc--Ccchhh--------------cCCcccchHHHHHHHHHHHHHHH-cCCHHHHHHH
Confidence 3456778888888775 444332 332110 01233457779999999999999 6787766 33
Q ss_pred Hhhhhc---ccccCCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHH
Q 038761 160 LYAHVS---MYLWDDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKV 235 (365)
Q Consensus 160 ~~~~l~---~~~~~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~ 235 (365)
+...+. ........|||+.||||||+++...|.|++. +.||.|.+.|++.|.++|..++.|.|.|||+||+.||+.
T Consensus 145 i~~~~~~~~~~~~~~~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Ae~~AA~~ 224 (235)
T PRK12371 145 IQRYWQKRALETDAARRDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGEGRSKRAAEQVAAEK 224 (235)
T ss_pred HHHHHHHHHhccccccCCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHH
Confidence 332221 1112346799999999999999999999987 789999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 038761 236 AYTALIER 243 (365)
Q Consensus 236 aL~~L~~~ 243 (365)
||+.|...
T Consensus 225 al~~~~~~ 232 (235)
T PRK12371 225 MLEREGVW 232 (235)
T ss_pred HHHHhhhh
Confidence 99998653
No 4
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=99.63 E-value=7.3e-16 Score=136.85 Aligned_cols=68 Identities=24% Similarity=0.332 Sum_probs=63.4
Q ss_pred ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761 1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS 70 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~ 70 (365)
+|||.||||||+++..+ .|.+ ...||+|.+.|++.|.|+|..++.| .|+|||+|||+||+.||..|..
T Consensus 109 DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G-~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA02701 109 NPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVATA-SGCSKKLARHAACADALTILIN 177 (183)
T ss_pred CccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEEEE-EeCCHHHHHHHHHHHHHHHHHh
Confidence 69999999999999888 8988 6679999999999999999999987 9999999999999999998854
No 5
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=99.62 E-value=1e-14 Score=136.12 Aligned_cols=146 Identities=25% Similarity=0.215 Sum_probs=117.4
Q ss_pred CccCcHHHHHHHHHHcCCCCCceeeeccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccCChhhh-
Q 038761 79 VQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEA- 157 (365)
Q Consensus 79 ~~~~~~s~L~E~~qk~~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g~~~~- 157 (365)
...+....|..++...++ ..|-....|.... +|.++-+-.|..-.|..+..+| +.|++.+
T Consensus 80 a~lV~~~~La~ia~~l~l--~~~l~lg~ge~~~----------------gg~~~~silaD~~EAligAiyl-D~g~~~~~ 140 (235)
T COG0571 80 AALVSEESLAEIARELGL--GDYLRLGKGEEKS----------------GGRRRESILADAFEALIGAIYL-DSGLEAAR 140 (235)
T ss_pred HHHHHHHHHHHHHHHhCc--cchhhccCChhhc----------------CCCCchhHHHHHHHHHHHHHHH-hCChHHHH
Confidence 445567788888888884 5676666666543 4567788899999999999999 7777666
Q ss_pred HHHhhh----hcccc-cCCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHH
Q 038761 158 IFLYAH----VSMYL-WDDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMK 231 (365)
Q Consensus 158 ~~~~~~----l~~~~-~~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~ 231 (365)
.++..+ +.+.. .....|||++||||||+++..+|.|.++ +.||.|++.|++.|.++|..++.|.|.|||+|||.
T Consensus 141 ~~i~~l~~~~~~~~~~~~~~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G~G~skk~AEq~ 220 (235)
T COG0571 141 KFILKLFLPRLEEIDAGDQFKDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQA 220 (235)
T ss_pred HHHHHHHHHHHhhccccccccChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEecccCHHHHHHH
Confidence 333322 22111 2334899999999999999999999998 66999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 038761 232 AAKVAYTALIER 243 (365)
Q Consensus 232 AA~~aL~~L~~~ 243 (365)
||+.||..|...
T Consensus 221 AA~~al~~l~~~ 232 (235)
T COG0571 221 AAEQALKKLGVK 232 (235)
T ss_pred HHHHHHHHhccc
Confidence 999999999764
No 6
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=99.60 E-value=4.2e-15 Score=111.20 Aligned_cols=67 Identities=33% Similarity=0.492 Sum_probs=62.2
Q ss_pred ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhc
Q 038761 1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHF 68 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L 68 (365)
+||+.|+||||++++..|.|++ ...|++|.+.|+|.|.|+|..+++| .|.|||+|++.||+.||+.|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g-~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEG-EGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEe-ecCCHHHHHHHHHHHHHHhC
Confidence 5899999999999999999999 6789999999999999999777776 99999999999999999875
No 7
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=99.60 E-value=5.2e-15 Score=131.42 Aligned_cols=72 Identities=26% Similarity=0.321 Sum_probs=67.1
Q ss_pred CCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHh
Q 038761 170 DDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE 242 (365)
Q Consensus 170 ~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~ 242 (365)
....|||+.||||||+++..+ .|.++ +.||.|.+.|+++|.|+|..++.|.|.|||+|||+||+.||..|..
T Consensus 105 ~k~~DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA02701 105 LKTLNPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVATASGCSKKLARHAACADALTILIN 177 (183)
T ss_pred CCCCCccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHHHh
Confidence 346799999999999999988 89877 7799999999999999999999999999999999999999999965
No 8
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=99.60 E-value=4.3e-15 Score=111.21 Aligned_cols=66 Identities=32% Similarity=0.473 Sum_probs=60.8
Q ss_pred hHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcC
Q 038761 2 YKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFT 69 (365)
Q Consensus 2 ~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~ 69 (365)
||+.|+||||++++ .|.|++ ...|++|.+.|+|.|.|+|..++.| .|.|||+|++.||+.||+.|.
T Consensus 1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g-~g~sKk~Ak~~AA~~al~~L~ 67 (67)
T smart00358 1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTGEG-EGSSKKEAKQRAAEAALRSLK 67 (67)
T ss_pred CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEEEe-ccCCHHHHHHHHHHHHHHhcC
Confidence 68999999999999 789999 4579999999999999999988776 899999999999999999873
No 9
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=99.59 E-value=3.4e-15 Score=133.39 Aligned_cols=68 Identities=28% Similarity=0.446 Sum_probs=62.1
Q ss_pred ChHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS 70 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~ 70 (365)
+|||.||||||+++... +|.+...||+|.+.|++.|.|+|..+++| .|.|||+|||+||+.||..|..
T Consensus 110 NpKS~LQE~~Qk~~~~~-y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G-~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA03103 110 NPCTVINEYCQITSRDW-SINITSSGPSHSPTFTASVIISGIKFKPA-IGSTKKEAKNNAAKLAMDKILN 177 (183)
T ss_pred ChhHHHHHHHHHhCCCe-EEEEEeeCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHHh
Confidence 58899999999999875 66667789999999999999999999997 9999999999999999998854
No 10
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=99.58 E-value=1.1e-14 Score=108.82 Aligned_cols=67 Identities=36% Similarity=0.538 Sum_probs=62.9
Q ss_pred chhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHH
Q 038761 174 FYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240 (365)
Q Consensus 174 n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L 240 (365)
|||+.|+||||++++..|.|++. ..|+.|.+.|.|.|.|+|..++.|.|.|||+||+.||+.||..|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 68999999999999999999995 78889999999999999988899999999999999999999875
No 11
>PRK14718 ribonuclease III; Provisional
Probab=99.58 E-value=2.5e-14 Score=142.40 Aligned_cols=145 Identities=21% Similarity=0.165 Sum_probs=110.2
Q ss_pred CccCcHHHHHHHHHHcCCCCCceeeeccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccCChhhh-
Q 038761 79 VQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEA- 157 (365)
Q Consensus 79 ~~~~~~s~L~E~~qk~~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g~~~~- 157 (365)
...+....|.+++...++. .|-+...|.. ..++..+.+-.|....|..+..|| +.|+..+
T Consensus 70 S~LVSnetLA~IAr~LGL~--d~Lrlg~gE~----------------~sgG~~~~sILADvFEALIGAIYL-DsG~e~a~ 130 (467)
T PRK14718 70 ANLVKQQSLYEIAQALNIS--DGLRLGEGEL----------------RSGGFRRPSILADAFEAIIGAVFL-DGGFEAAQ 130 (467)
T ss_pred HHHhhhHHHHHHHHHcCch--HHHhhCCccc----------------ccCCCCChhHHHHHHHHHHHHHHH-ccCHHHHH
Confidence 3456678888999988863 3433322211 012334667889999999999999 7888765
Q ss_pred HHHhh----hhccc-ccCCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCE-EEeeEeccCHHHHHH
Q 038761 158 IFLYA----HVSMY-LWDDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGE-VFYGKAGRTKKKAEM 230 (365)
Q Consensus 158 ~~~~~----~l~~~-~~~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~-~~~~G~G~SKK~Ae~ 230 (365)
.++.. .+... ......|||+.||||||++++.+|.|.++ +.|+.|.+.|++.|.|+|. .++.|.|.|||+|||
T Consensus 131 ~fI~~ll~p~i~~~d~~~~~kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ 210 (467)
T PRK14718 131 GVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQ 210 (467)
T ss_pred HHHHHHHHHHHhhhcccccccCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHH
Confidence 33322 22211 12345799999999999999999999987 7899999999999999995 458999999999999
Q ss_pred HHHHHHHHHHHh
Q 038761 231 KAAKVAYTALIE 242 (365)
Q Consensus 231 ~AA~~aL~~L~~ 242 (365)
.||+.||+.|..
T Consensus 211 ~AAk~AL~kL~~ 222 (467)
T PRK14718 211 AAAKKALDEVTA 222 (467)
T ss_pred HHHHHHHHHhcc
Confidence 999999999973
No 12
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=99.56 E-value=1.6e-14 Score=129.02 Aligned_cols=71 Identities=27% Similarity=0.297 Sum_probs=65.2
Q ss_pred CCcchhhHHHHHHHhcCCCCCeEEEEeeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHh
Q 038761 171 DGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE 242 (365)
Q Consensus 171 ~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~ 242 (365)
...|||++||||||+++... .|.+.+.||.|.+.|+++|.|+|..+++|.|.|||+|||+||+.||..|..
T Consensus 107 K~kNpKS~LQE~~Qk~~~~~-y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA03103 107 KDKNPCTVINEYCQITSRDW-SINITSSGPSHSPTFTASVIISGIKFKPAIGSTKKEAKNNAAKLAMDKILN 177 (183)
T ss_pred ccCChhHHHHHHHHHhCCCe-EEEEEeeCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence 45799999999999999886 555568999999999999999999999999999999999999999999965
No 13
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=99.56 E-value=2.5e-14 Score=107.39 Aligned_cols=66 Identities=35% Similarity=0.504 Sum_probs=60.3
Q ss_pred hhhHHHHHHHhcCCCCCeEEEEeeCCCCC-CeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHH
Q 038761 175 YKNVLHELSLREGLPVPLYETIKCGAPHM-PTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240 (365)
Q Consensus 175 ~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~-~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L 240 (365)
||+.|+|||+++++.+|.|.+...++.|. ++|.|+|.|+|..++.|.|.|||+||+.||+.||+.|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeEeccCCHHHHHHHHHHHHHHhC
Confidence 68999999999999888877777776655 8999999999999999999999999999999999987
No 14
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=99.55 E-value=1.2e-14 Score=109.07 Aligned_cols=66 Identities=29% Similarity=0.577 Sum_probs=59.0
Q ss_pred hHHHHHHHHHhcCCCCCeEEeeecCCCCC-CcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhc
Q 038761 2 YKTKVQELCHQKRWSLPRYSTMKDGADHD-PRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHF 68 (365)
Q Consensus 2 ~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~-~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L 68 (365)
||+.|+|||+++++.+|.|.....|++|. +.|.|+|+|+|..++.| .|.|||+|++.||+.||+.|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g-~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEG-EGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEEE-EESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeEe-ccCCHHHHHHHHHHHHHHhC
Confidence 79999999999999887777766666555 89999999999999876 99999999999999999876
No 15
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=99.55 E-value=3.4e-14 Score=106.32 Aligned_cols=65 Identities=38% Similarity=0.566 Sum_probs=61.2
Q ss_pred hhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHH
Q 038761 175 YKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTAL 240 (365)
Q Consensus 175 ~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L 240 (365)
||+.|+|+||++++ .|.|++. ..|+.|.+.|.|+|.|+|..++.|.|.|||+||+.||+.||..|
T Consensus 1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTGEGEGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHhc
Confidence 58999999999999 8899988 57899999999999999988899999999999999999999887
No 16
>PRK12372 ribonuclease III; Reviewed
Probab=99.54 E-value=1.3e-13 Score=136.52 Aligned_cols=145 Identities=21% Similarity=0.183 Sum_probs=110.0
Q ss_pred CccCcHHHHHHHHHHcCCCCCceeeeccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccCChhhhH
Q 038761 79 VQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAI 158 (365)
Q Consensus 79 ~~~~~~s~L~E~~qk~~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g~~~~~ 158 (365)
...+....|.++|...++ ..|-....|.. ..++..+.+-.|....|..+..+| +.|++.+.
T Consensus 70 S~LVsn~tLA~IA~~LgL--~~~Lrlg~ge~----------------~sgg~~~~kILADvfEALIGAIYL-DsG~e~a~ 130 (413)
T PRK12372 70 ANLVKQQSLYEIAQALNI--SEGLRLGEGEL----------------RSGGFRRPSILADAFEAIIGAVFL-DGGFEAAQ 130 (413)
T ss_pred HHHhhhHHHHHHHHHcCc--hHhhhcCcchh----------------hcCCCCCccHHHHHHHHHHHHHHH-hCCHHHHH
Confidence 345667888999998886 33333222211 112345677899999999999999 67887653
Q ss_pred -HHh----hhhccc-ccCCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCE-EEeeEeccCHHHHHH
Q 038761 159 -FLY----AHVSMY-LWDDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGE-VFYGKAGRTKKKAEM 230 (365)
Q Consensus 159 -~~~----~~l~~~-~~~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~-~~~~G~G~SKK~Ae~ 230 (365)
++. +.+... ......|||+.||||||++++..|.|+++ +.|+.|.+.|++.|.|+|. .++.|.|.|||+|||
T Consensus 131 ~fV~~ll~p~l~~~~~~~~~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ 210 (413)
T PRK12372 131 GVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQ 210 (413)
T ss_pred HHHHHHHHHHHhhcccccccCCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHH
Confidence 222 222221 12245799999999999999999999987 7899999999999999985 457999999999999
Q ss_pred HHHHHHHHHHHh
Q 038761 231 KAAKVAYTALIE 242 (365)
Q Consensus 231 ~AA~~aL~~L~~ 242 (365)
.||+.||+.|..
T Consensus 211 ~AAr~AL~kL~~ 222 (413)
T PRK12372 211 AAAKKALDEVMA 222 (413)
T ss_pred HHHHHHHHHHhc
Confidence 999999999984
No 17
>PRK12371 ribonuclease III; Reviewed
Probab=99.53 E-value=2.3e-14 Score=134.34 Aligned_cols=69 Identities=29% Similarity=0.401 Sum_probs=64.7
Q ss_pred ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761 1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS 70 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~ 70 (365)
+||+.||||||++++..|.|++ .+.||+|.+.|+|+|+|+|..+++| .|+|||+||++||+.||..|..
T Consensus 162 d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g-~G~sKK~Ae~~AA~~al~~~~~ 231 (235)
T PRK12371 162 DAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETG-EGRSKRAAEQVAAEKMLEREGV 231 (235)
T ss_pred CHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHhhh
Confidence 6899999999999988999999 6789999999999999999999886 9999999999999999998864
No 18
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=99.46 E-value=1.5e-13 Score=128.32 Aligned_cols=70 Identities=30% Similarity=0.440 Sum_probs=65.9
Q ss_pred ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCC
Q 038761 1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSP 71 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~ 71 (365)
+||+.||||||+++..+|.|++ .+.||+|++.|++.|.|+|..++.| .|+|||+|||.||+.||..|...
T Consensus 162 D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G-~G~skk~AEq~AA~~al~~l~~~ 232 (235)
T COG0571 162 DPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTG-KGRSKKEAEQAAAEQALKKLGVK 232 (235)
T ss_pred ChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEe-cccCHHHHHHHHHHHHHHHhccc
Confidence 5899999999999999999999 6679999999999999999999897 99999999999999999998753
No 19
>PRK14718 ribonuclease III; Provisional
Probab=99.44 E-value=2e-13 Score=136.01 Aligned_cols=70 Identities=30% Similarity=0.378 Sum_probs=64.3
Q ss_pred ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEE-eecccccCcchHHHHHHHHHHHhcCCC
Q 038761 1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSF-HSSVSCKSSKESQNDAAKLAFLHFTSP 71 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~-~~gg~g~SKK~Aeq~AA~~AL~~L~~~ 71 (365)
+||+.||||||++++.+|.|++ .+.||+|.+.|++.|+|+|..+ +.| .|.|||+|||.||+.||+.|...
T Consensus 152 DyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G-~G~SKKeAEQ~AAk~AL~kL~~~ 223 (467)
T PRK14718 152 DAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSG-SGASRRAAEQAAAKKALDEVTAV 223 (467)
T ss_pred CHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEE-EcCCHHHHHHHHHHHHHHHhccc
Confidence 6899999999999999999999 6789999999999999999644 676 99999999999999999999853
No 20
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.40 E-value=4.5e-12 Score=117.98 Aligned_cols=142 Identities=30% Similarity=0.301 Sum_probs=105.5
Q ss_pred CcHHHHHHHHHHcCCCCCceeeeccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccCChhhh-HHH
Q 038761 82 RYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEA-IFL 160 (365)
Q Consensus 82 ~~~s~L~E~~qk~~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g~~~~-~~~ 160 (365)
.....|..++.+.++ ..|-.. ++... . ..+..+.|-.|....|..+..+| +.|+..+ .++
T Consensus 80 vsn~~la~~a~~lgl--~~~i~~--~~~~~-------------~-~~~~~~~k~~ad~~EA~iGAiyl-d~g~~~~~~~i 140 (229)
T PRK00102 80 VREESLAEIARELGL--GEYLLL--GKGEE-------------K-SGGRRRPSILADAFEALIGAIYL-DQGLEAARKFI 140 (229)
T ss_pred hCHHHHHHHHHHCCc--HHHHcc--CcHHH-------------H-cCCCCCccHHHHHHHHHHHHHHH-hCCHHHHHHHH
Confidence 445677888888775 333222 22110 0 01123456789999999999998 5677655 232
Q ss_pred h----hhhccc-ccCCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHH
Q 038761 161 Y----AHVSMY-LWDDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234 (365)
Q Consensus 161 ~----~~l~~~-~~~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~ 234 (365)
. +.+... ......|||+.|+||||+.++..|.|.++ +.|+.|.+.|+|.|.++|..++.|.|.|||+||+.||+
T Consensus 141 ~~~~~~~l~~~~~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~skk~Ae~~AA~ 220 (229)
T PRK00102 141 LRLFEPRIEEIDLGDLVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTGSSKKEAEQAAAK 220 (229)
T ss_pred HHHHHHHHHhhccccccCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHH
Confidence 2 222211 12456799999999999999999999987 67999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 038761 235 VAYTALIE 242 (365)
Q Consensus 235 ~aL~~L~~ 242 (365)
.||+.|+.
T Consensus 221 ~Al~~l~~ 228 (229)
T PRK00102 221 QALKKLKE 228 (229)
T ss_pred HHHHHHhh
Confidence 99999975
No 21
>PRK12372 ribonuclease III; Reviewed
Probab=99.39 E-value=7e-13 Score=131.37 Aligned_cols=69 Identities=29% Similarity=0.357 Sum_probs=63.7
Q ss_pred ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEE-EeecccccCcchHHHHHHHHHHHhcCC
Q 038761 1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLS-FHSSVSCKSSKESQNDAAKLAFLHFTS 70 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~-~~~gg~g~SKK~Aeq~AA~~AL~~L~~ 70 (365)
+||+.||||||++++.+|.|++ .+.||+|++.|+|.|+|+|.. ++.| .|.|||+|||+||+.||+.|..
T Consensus 152 D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G-~G~SKKeAEQ~AAr~AL~kL~~ 222 (413)
T PRK12372 152 DAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSG-SGASRRAAEQAAAKKALDEVMA 222 (413)
T ss_pred CHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEE-EeCCHHHHHHHHHHHHHHHHhc
Confidence 5899999999999999999998 678999999999999999964 4565 9999999999999999999985
No 22
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=99.36 E-value=7e-12 Score=115.87 Aligned_cols=140 Identities=26% Similarity=0.280 Sum_probs=104.1
Q ss_pred CcHHHHHHHHHHcCCCCCceeeeccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccCChhhhH-HH
Q 038761 82 RYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAI-FL 160 (365)
Q Consensus 82 ~~~s~L~E~~qk~~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g~~~~~-~~ 160 (365)
.....|..++.+.++ +.|-. .++.... ..+....|-.|.--.|..+..+| +.|++.+. ++
T Consensus 74 vsn~~la~~a~~~gl--~~~i~--~~~~~~~--------------~~~~~~~k~~ad~~eAliGAiyl-d~g~~~~~~~i 134 (220)
T TIGR02191 74 VSEESLAEVARELGL--GKFLL--LGKGEEK--------------SGGRRRESILADAFEALIGAIYL-DSGLEAARKFI 134 (220)
T ss_pred hCHHHHHHHHHHCCc--HHHhc--cCchHhh--------------cCCcccchHHHHHHHHHHHHHHH-hCCHHHHHHHH
Confidence 346677888888775 33322 2221100 01234567789999999999999 67776652 32
Q ss_pred ----hhhhccc-ccCCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHH
Q 038761 161 ----YAHVSMY-LWDDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAK 234 (365)
Q Consensus 161 ----~~~l~~~-~~~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~ 234 (365)
.+.+... ......|||+.|+|+||++++..|.|++. +.|+.|.+.|+|.|.++|..++.|.|.|||+||++||+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g~g~skk~A~~~AA~ 214 (220)
T TIGR02191 135 LKLLIPRIDAIEKEETLKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKGKSKKEAEQNAAK 214 (220)
T ss_pred HHHHHHHHHhhhcccccCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHH
Confidence 2322211 12357899999999999999999999987 66889999999999999999999999999999999999
Q ss_pred HHHHHH
Q 038761 235 VAYTAL 240 (365)
Q Consensus 235 ~aL~~L 240 (365)
.||+.|
T Consensus 215 ~Al~~l 220 (220)
T TIGR02191 215 AALEKL 220 (220)
T ss_pred HHHHhC
Confidence 999875
No 23
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=99.35 E-value=2.1e-12 Score=101.37 Aligned_cols=68 Identities=26% Similarity=0.520 Sum_probs=60.4
Q ss_pred hHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEe---------ecccccCcchHHHHHHHHHHHhcC
Q 038761 2 YKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFH---------SSVSCKSSKESQNDAAKLAFLHFT 69 (365)
Q Consensus 2 ~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~---------~gg~g~SKK~Aeq~AA~~AL~~L~ 69 (365)
+++.|+|+|+|++|..|.|++ ...||+|.+.|.+.|.|++..+. .+.--.+||+|+..||+.+|..|+
T Consensus 3 a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg 80 (80)
T PF14709_consen 3 AVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG 80 (80)
T ss_pred HHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999 67899999999999999988873 112478999999999999999874
No 24
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.29 E-value=8e-12 Score=116.34 Aligned_cols=69 Identities=35% Similarity=0.539 Sum_probs=64.2
Q ss_pred ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761 1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS 70 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~ 70 (365)
+||+.|+||||++++..|.|++ ...|+.|.+.|+|.|+++|..+++| .|.|||+||++||+.||+.|..
T Consensus 159 ~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g-~g~skk~Ae~~AA~~Al~~l~~ 228 (229)
T PRK00102 159 DYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEG-TGSSKKEAEQAAAKQALKKLKE 228 (229)
T ss_pred CHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHhh
Confidence 5899999999999999999998 6689999999999999999999886 9999999999999999998853
No 25
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=99.26 E-value=1.3e-11 Score=96.86 Aligned_cols=68 Identities=31% Similarity=0.374 Sum_probs=59.7
Q ss_pred chhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEe----------eEeccCHHHHHHHHHHHHHHHHH
Q 038761 174 FYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFY----------GKAGRTKKKAEMKAAKVAYTALI 241 (365)
Q Consensus 174 n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~----------~G~G~SKK~Ae~~AA~~aL~~L~ 241 (365)
++++.|+|+|++++|..|.|++. +.||.|...|.+.|+|.+..+. .-...+||+|+..||+.||+.|+
T Consensus 2 ~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg 80 (80)
T PF14709_consen 2 SAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG 80 (80)
T ss_pred CHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence 67899999999999999999997 7899999999999999876542 12358899999999999999874
No 26
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=99.23 E-value=2.4e-11 Score=112.31 Aligned_cols=67 Identities=39% Similarity=0.574 Sum_probs=62.2
Q ss_pred ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhc
Q 038761 1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHF 68 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L 68 (365)
+||+.|+||||++++..|.|++ ...|++|.+.|.|.|+++|..++.| .|.|||+|+++||+.||+.|
T Consensus 153 ~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g-~g~skk~A~~~AA~~Al~~l 220 (220)
T TIGR02191 153 DYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEG-KGKSKKEAEQNAAKAALEKL 220 (220)
T ss_pred ChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHhC
Confidence 5899999999999998899999 4679999999999999999999887 89999999999999999875
No 27
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=99.21 E-value=4.4e-11 Score=122.06 Aligned_cols=123 Identities=31% Similarity=0.366 Sum_probs=104.4
Q ss_pred CeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCCCCCC------C--------------
Q 038761 18 PRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPPPPP------P-------------- 76 (365)
Q Consensus 18 P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~~~~~------~-------------- 76 (365)
+.|.. .+.||.|.+.|.+.|.|+|..+. ||.|++.||+.|++.+.+.+..- .
T Consensus 10 ~~~~~~~q~~p~~~p~~~~~~~v~~~~~~-------~k~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (542)
T KOG2777|consen 10 LQYNLVSQTGPVHAPLFPFSVEVNGQEFP-------KKKAKQRAAEKALRVFLQFPEAHLSMGGTEGVNEDLTSDQADAF 82 (542)
T ss_pred cccccccccCCCCCCcccceEEecccccc-------cccccchhhhHHHHHHhhcCCcccccCCCCccccccchhhhHHH
Confidence 67887 77899999999999999999863 99999999999999988754210 0
Q ss_pred ---CCCccCcHHHHHHHHHHcCCCCCceeee-ccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccC
Q 038761 77 ---PNVQCRYKSVLQNYARRKNLDSPLYSSI-REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACD 152 (365)
Q Consensus 77 ---~~~~~~~~s~L~E~~qk~~l~~P~Y~~~-~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~ 152 (365)
....++|++.|+|+++ -+.|.+. ..|+.|.+.|.|.|.|+|+.|++ + |+|||+||+.||+.||+.|...
T Consensus 83 ~~~~~~~~npv~ll~e~~~-----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~-~-~~sKk~ak~~aa~~al~~l~~~ 155 (542)
T KOG2777|consen 83 LSLGKEGKNPVSLLHELAN-----GLFFDFVNESGPQHAPKFVMSVVVDGRWFEG-G-GRSKKEAKQEAAMAALQVLFKI 155 (542)
T ss_pred HhhhhccCCchHHHHHHhc-----ccceeeeccCCCCCCceEEEEEEECCEEccC-C-CcchHHHHHHHHHHHHHHHHhc
Confidence 1347899999999998 3557666 77999999999999999999986 4 9999999999999999999765
Q ss_pred Ch
Q 038761 153 DF 154 (365)
Q Consensus 153 g~ 154 (365)
..
T Consensus 156 ~~ 157 (542)
T KOG2777|consen 156 DE 157 (542)
T ss_pred cC
Confidence 43
No 28
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=99.13 E-value=2.1e-10 Score=117.10 Aligned_cols=135 Identities=30% Similarity=0.372 Sum_probs=105.9
Q ss_pred Cceeee-ccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccCChhhhHHHh-----hhhc-----c-
Q 038761 99 PLYSSI-REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAIFLY-----AHVS-----M- 166 (365)
Q Consensus 99 P~Y~~~-~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g~~~~~~~~-----~~l~-----~- 166 (365)
+.|..+ +.||.|.+.|.+.|+|+|..|. ||-|+..||+.|+..+.+.+.....+.. ..+. +
T Consensus 10 ~~~~~~~q~~p~~~p~~~~~~~v~~~~~~-------~k~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (542)
T KOG2777|consen 10 LQYNLVSQTGPVHAPLFPFSVEVNGQEFP-------KKKAKQRAAEKALRVFLQFPEAHLSMGGTEGVNEDLTSDQADAF 82 (542)
T ss_pred cccccccccCCCCCCcccceEEecccccc-------cccccchhhhHHHHHHhhcCCcccccCCCCccccccchhhhHHH
Confidence 456544 7899999999999999999984 9999999999999988654321110000 0000 0
Q ss_pred -cccCCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhhc
Q 038761 167 -YLWDDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERK 244 (365)
Q Consensus 167 -~~~~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~~ 244 (365)
.......|+++.|+|+++ .+.|.+. +.|+.|.+.|.+.|+|+|+.|..| |.|||+|+++||+.||+.|....
T Consensus 83 ~~~~~~~~npv~ll~e~~~-----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~~-~~sKk~ak~~aa~~al~~l~~~~ 156 (542)
T KOG2777|consen 83 LSLGKEGKNPVSLLHELAN-----GLFFDFVNESGPQHAPKFVMSVVVDGRWFEGG-GRSKKEAKQEAAMAALQVLFKID 156 (542)
T ss_pred HhhhhccCCchHHHHHHhc-----ccceeeeccCCCCCCceEEEEEEECCEEccCC-CcchHHHHHHHHHHHHHHHHhcc
Confidence 011237899999999998 5688877 889999999999999999998777 99999999999999999998764
Q ss_pred cc
Q 038761 245 LI 246 (365)
Q Consensus 245 ~~ 246 (365)
-+
T Consensus 157 ~~ 158 (542)
T KOG2777|consen 157 EN 158 (542)
T ss_pred CC
Confidence 44
No 29
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=99.09 E-value=4.6e-10 Score=111.82 Aligned_cols=176 Identities=17% Similarity=0.100 Sum_probs=124.0
Q ss_pred CCccCcHHHHHHHHHHcCCCCCceeeeccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccCC----
Q 038761 78 NVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDD---- 153 (365)
Q Consensus 78 ~~~~~~~s~L~E~~qk~~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g---- 153 (365)
.+.+..++.|+||+|+-.-.+|.|++..... .+..|...|.+++..|++ |+|.|||.||..||+.+|..|...-
T Consensus 372 pngks~vCiLhEy~q~~lk~~pvyef~e~~n-~stpysa~v~~d~~~yGs-G~g~sKK~Ak~~AAR~tLeiLIPd~~~~~ 449 (650)
T KOG4334|consen 372 PNGKSKVCILHEYAQQCLKSLPVYEFAENDN-NSTPYSAGVLPDLFPYGS-GVGASKKTAKLVAARDTLEILIPDLRVSE 449 (650)
T ss_pred CCCceeeehHHHHHHHHhhhcceeehhhccC-CCCccccccccccccccc-ccccchHHHHHHHHHHHHHHhcchhhhcc
Confidence 4667789999999999887889998874332 345799999999999875 6899999999999999999985221
Q ss_pred -------hhhh----HH--Hhhhhccc--------ccCCCcchhhHHHHHHHhcC-CCCCeEEEEe-eCCCCCCeEEEEE
Q 038761 154 -------FQEA----IF--LYAHVSMY--------LWDDGVFYKNVLHELSLREG-LPVPLYETIK-CGAPHMPTFISMV 210 (365)
Q Consensus 154 -------~~~~----~~--~~~~l~~~--------~~~~~~n~ks~LqE~~qk~~-~~~P~Y~~~~-~Gp~h~~~F~~~V 210 (365)
..+. .+ ++.++... ..-....+-+.|.++.+++. |.--....+. .+.+...+|++.|
T Consensus 450 ~n~~d~k~~~~~k~q~~le~F~~I~Iedprv~e~ctk~~~psPy~iL~~cl~Rn~g~~d~~ik~E~i~~~nqkse~im~~ 529 (650)
T KOG4334|consen 450 DNVCDGKVEEDGKQQGFLELFKKIKIEDPRVVEMCTKCAIPSPYNILRDCLSRNLGWNDLVIKKEMIGNGNQKSEVIMIL 529 (650)
T ss_pred cccccccccccccchhHHHHhhcccccCchHHHHhhhcCCCCHHHHHHHHHHhhcCCcceeeeeeccCCCCccceeEeee
Confidence 0000 01 11222100 00123456678888887754 4211222221 1224556787777
Q ss_pred EECCEEEeeEeccCHHHHHHHHHHHHHHHHHhhcccCCCC--CCCCccee
Q 038761 211 EVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSLP--FHGGRSCS 258 (365)
Q Consensus 211 ~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~~~~~~~p--~~~~~~~s 258 (365)
|+...+|+.++|++++|.|.+..|+.|.-.-+.|+|. ++|.++++
T Consensus 530 ---Gkht~~~~cknkr~gkQlASQ~ilq~lHPh~~twGSlLriYGr~sik 576 (650)
T KOG4334|consen 530 ---GKHTEEAECKNKRQGKQLASQRILQKLHPHLLTWGSLLRIYGRLSIK 576 (650)
T ss_pred ---ccceeeeeeechhHHHHHHHHHHHHHhCHHhhhHHHHHHHhhhhhhH
Confidence 7788899999999999999999999999999999995 47777654
No 30
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=98.80 E-value=2.7e-08 Score=99.37 Aligned_cols=144 Identities=17% Similarity=0.147 Sum_probs=98.1
Q ss_pred hHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCCC--C------
Q 038761 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPP--P------ 73 (365)
Q Consensus 2 ~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~~--~------ 73 (365)
..-.|+||+|.....+|.|++.+.. .....|...|.+|+..||+| .|.|||.|+..||+.+|..|.-.. +
T Consensus 377 ~vCiLhEy~q~~lk~~pvyef~e~~-n~stpysa~v~~d~~~yGsG-~g~sKK~Ak~~AAR~tLeiLIPd~~~~~~n~~d 454 (650)
T KOG4334|consen 377 KVCILHEYAQQCLKSLPVYEFAEND-NNSTPYSAGVLPDLFPYGSG-VGASKKTAKLVAARDTLEILIPDLRVSEDNVCD 454 (650)
T ss_pred eeehHHHHHHHHhhhcceeehhhcc-CCCCcccccccccccccccc-cccchHHHHHHHHHHHHHHhcchhhhccccccc
Confidence 3457999999999999999984432 34567999999999999997 999999999999999999986421 0
Q ss_pred --C----CC--------------C--------CCccCcHHHHHHHHHHc-CCCCCceeeeccCCCCCcceEEEEEEcCeE
Q 038761 74 --P----PP--------------P--------NVQCRYKSVLQNYARRK-NLDSPLYSSIREGPAHACSFKARVTIDGHT 124 (365)
Q Consensus 74 --~----~~--------------~--------~~~~~~~s~L~E~~qk~-~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~ 124 (365)
+ .. | .....|-.+|.+..+++ ||.-........|..++ .-.+.+.++.+.
T Consensus 455 ~k~~~~~k~q~~le~F~~I~Iedprv~e~ctk~~~psPy~iL~~cl~Rn~g~~d~~ik~E~i~~~nq-kse~im~~Gkht 533 (650)
T KOG4334|consen 455 GKVEEDGKQQGFLELFKKIKIEDPRVVEMCTKCAIPSPYNILRDCLSRNLGWNDLVIKKEMIGNGNQ-KSEVIMILGKHT 533 (650)
T ss_pred ccccccccchhHHHHhhcccccCchHHHHhhhcCCCCHHHHHHHHHHhhcCCcceeeeeeccCCCCc-cceeEeeeccce
Confidence 0 00 0 12334556666555544 23111111111122222 234555666666
Q ss_pred EEeccccccHHHHHHHHHHHHHHHhc
Q 038761 125 FESLEFFKNLKQAEHAAAKVALFSLA 150 (365)
Q Consensus 125 ~~~~g~g~sKK~AK~~AA~~aL~~L~ 150 (365)
.. +.+++|+.+||.|.+..|+.|.
T Consensus 534 ~~--~~cknkr~gkQlASQ~ilq~lH 557 (650)
T KOG4334|consen 534 EE--AECKNKRQGKQLASQRILQKLH 557 (650)
T ss_pred ee--eeeechhHHHHHHHHHHHHHhC
Confidence 54 4789999999999999999993
No 31
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=98.62 E-value=2.7e-07 Score=91.46 Aligned_cols=112 Identities=21% Similarity=0.234 Sum_probs=92.8
Q ss_pred ccccHHHHHHHHHHHHHHHhccCChhhh-HHH----hhhhcccc-cCCCcchhhHHHHHHHhcCC------CCCeEEEE-
Q 038761 130 FFKNLKQAEHAAAKVALFSLACDDFQEA-IFL----YAHVSMYL-WDDGVFYKNVLHELSLREGL------PVPLYETI- 196 (365)
Q Consensus 130 ~g~sKK~AK~~AA~~aL~~L~~~g~~~~-~~~----~~~l~~~~-~~~~~n~ks~LqE~~qk~~~------~~P~Y~~~- 196 (365)
.++.|-.|..-.|..+..++ +.++..+ +|+ .|.+...+ .....++|+.|+.+|..... .+|.|.+.
T Consensus 379 ~lk~K~~ADlfEAfiGaLyv-D~~le~~~qf~~~l~~Prl~~fi~nq~wndpkskLqq~cl~~rys~~~epdip~y~V~~ 457 (533)
T KOG1817|consen 379 NLKLKDYADLFEAFIGALYV-DKGLEYCRQFLRVLFFPRLKEFIRNQDWNDPKSKLQQCCLTLRYSLGGEPDIPLYKVLG 457 (533)
T ss_pred hhhHHHHHHHHHHHHHHHhh-cCCcHHHHHHHHHHhhHHHHHHHHhhhccCcHHHHHHHHHHHhcccCCCCCCceEEEec
Confidence 58899999999999999998 5666555 342 23333322 24678999999999988653 48888887
Q ss_pred eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHh
Q 038761 197 KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE 242 (365)
Q Consensus 197 ~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~ 242 (365)
..||.+.+.|++.|.++|+.+++|+|.|-|+|+..||+.||+.+..
T Consensus 458 ~~gpa~~r~y~Vavyf~gkrlat~~G~nik~Ae~rAA~~ALe~~~~ 503 (533)
T KOG1817|consen 458 AKGPANDRNYKVAVYFKGKRLATGVGSNIKQAEMRAAMQALENLKM 503 (533)
T ss_pred ccCCCCCCceEEEEEECCEEEeeccCchHhHHHHHHHHHHHHHHHh
Confidence 7889999999999999999999999999999999999999999975
No 32
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=98.37 E-value=8.7e-07 Score=87.88 Aligned_cols=69 Identities=25% Similarity=0.361 Sum_probs=63.3
Q ss_pred ChHHHHHHHHHhcCCC------CCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761 1 MYKTKVQELCHQKRWS------LPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS 70 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~------~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~ 70 (365)
++|++||.||-.++.+ +|.|.+ ...||.+.+.|.+.|+++|+.+++| .|+|-|.|+..||++||+.+..
T Consensus 428 dpkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~-~G~nik~Ae~rAA~~ALe~~~~ 503 (533)
T KOG1817|consen 428 DPKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLATG-VGSNIKQAEMRAAMQALENLKM 503 (533)
T ss_pred CcHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEeec-cCchHhHHHHHHHHHHHHHHHh
Confidence 4899999999998765 788988 6789999999999999999999997 9999999999999999998874
No 33
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.90 E-value=2.3e-05 Score=84.03 Aligned_cols=220 Identities=15% Similarity=0.130 Sum_probs=135.9
Q ss_pred hHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCCCCC------C
Q 038761 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPPPP------P 75 (365)
Q Consensus 2 ~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~~~~------~ 75 (365)
-|..|..||-|++.. |.|.+..+|+....+|.|.|.+.+..+..-+...+||.|+.+||+...+.|...... .
T Consensus 3 ~k~fly~~~~k~~~~-p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr~Gk~n~~d~p~ 81 (1282)
T KOG0921|consen 3 VKEFLYAWLGKNKYG-PTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVREGKMQQSDIPT 81 (1282)
T ss_pred HHHHHHHHHhhhccC-cceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhhhccccccCCcc
Confidence 478999999999988 899998889999999999999999887543467779999999999999998764311 0
Q ss_pred -CCCCccCcHHHHHHHHHHcCCCCCceeee-ccCCCCCcceEEEEEEcCeEEEecccccc----HHHHHHHHHHHHHHHh
Q 038761 76 -PPNVQCRYKSVLQNYARRKNLDSPLYSSI-REGPAHACSFKARVTIDGHTFESLEFFKN----LKQAEHAAAKVALFSL 149 (365)
Q Consensus 76 -~~~~~~~~~s~L~E~~qk~~l~~P~Y~~~-~~Gp~h~~~F~~~v~I~g~~~~~~g~g~s----KK~AK~~AA~~aL~~L 149 (365)
.+.....+ +-|+..-.......|.+-+. ..++...+. .+.-..+..+... .|.. -..|+..++..+..+
T Consensus 82 ~~s~s~~~~-~~l~~~~~a~~~~~~~~g~~~q~~~qd~p~--~~~p~~~d~~~~~-~g~~~~~~~qkae~~~e~ea~d~- 156 (1282)
T KOG0921|consen 82 LTSSSLEAS-STWQDSETATMFCGGEDGNSFQESQQPIPQ--KRFPWSNNAYQRN-EGTHEQYITQKAEEIAESETVDL- 156 (1282)
T ss_pred cccccccCc-ccccccccccccccccccccCCCCCCCccc--ccccccccccccC-CCCCchhHHHHhhhhhhhhhhcc-
Confidence 01122223 33332221111112221111 111111110 0111112222111 1111 111222222211111
Q ss_pred ccCChhhhHHHhhhhccccc--CCCcchhhHHHHHHHhcCCCCCeEEEEeeCCCCCCeEEEEEEE-----CCEEEeeEec
Q 038761 150 ACDDFQEAIFLYAHVSMYLW--DDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEV-----DGEVFYGKAG 222 (365)
Q Consensus 150 ~~~g~~~~~~~~~~l~~~~~--~~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~i-----~g~~~~~G~G 222 (365)
...++ ....|.|..|+++-|++.. ...|+....|+.|.+.|+.+..+ +-...+.+.|
T Consensus 157 ---------------~~~ihg~wt~eN~K~~ln~~~q~~~~-~~~y~~~~~g~~~~~s~~~e~si~v~~~~~~~~~~~~g 220 (1282)
T KOG0921|consen 157 ---------------NAEIHGNWTMENAKKALNEYLQKMRI-QDNYKYTIVGPEHVRSFEAEASIYVPQLNRNLVAKETG 220 (1282)
T ss_pred ---------------CccccCCCCcchhHHHHhHHHhhhhh-ccccceeecCCccccchhhhHHHhhhhhchhhhhhhcc
Confidence 11112 2456889999999999999 44899999999999999988655 2233466889
Q ss_pred cCHHHHHHHHHHHHHHHHHhh
Q 038761 223 RTKKKAEMKAAKVAYTALIER 243 (365)
Q Consensus 223 ~SKK~Ae~~AA~~aL~~L~~~ 243 (365)
.+||.|+...|...+.+|.+.
T Consensus 221 snkk~~~~~ca~s~vrqm~hl 241 (1282)
T KOG0921|consen 221 SNKKVAEASCALSLVRQLFHL 241 (1282)
T ss_pred ccceecCcchHHHHHHHHHHH
Confidence 999999999999999998653
No 34
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00014 Score=69.49 Aligned_cols=80 Identities=21% Similarity=0.236 Sum_probs=70.6
Q ss_pred CcchhhHHHHHHHhcCCCCCeEEEE-eeCC-CCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhhcccCCC
Q 038761 172 GVFYKNVLHELSLREGLPVPLYETI-KCGA-PHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSL 249 (365)
Q Consensus 172 ~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp-~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~~~~~~~ 249 (365)
..+|...|-++|++++...|++.+. +.|- ...+.|++-+.-|.+.+|.|.|.|-|.|++.||+.||..+-+..+....
T Consensus 231 l~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGqG~Gesl~~A~e~AA~dAL~k~y~~tp~~~~ 310 (333)
T KOG3769|consen 231 LQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQGQGESLKLAEEQAARDALIKLYDHTPERQR 310 (333)
T ss_pred ccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhccCcchHHHHHHHHHHHHHHHHHHcCChhhcC
Confidence 4689999999999999999999988 7775 4688999999999989999999999999999999999999887655555
Q ss_pred CC
Q 038761 250 PF 251 (365)
Q Consensus 250 p~ 251 (365)
|+
T Consensus 311 p~ 312 (333)
T KOG3769|consen 311 PP 312 (333)
T ss_pred CC
Confidence 54
No 35
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]
Probab=97.20 E-value=0.00055 Score=71.90 Aligned_cols=123 Identities=22% Similarity=0.202 Sum_probs=93.0
Q ss_pred eEE------e-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCCC--------------C----
Q 038761 19 RYS------T-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPP--------------P---- 73 (365)
Q Consensus 19 ~Y~------~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~~--------------~---- 73 (365)
.|+ + ...||.|.++|+++|.+||..+.. .|.|||.|+..||++-|+....+- +
T Consensus 387 QYk~kv~p~Lvv~t~P~~~~~~t~e~r~~~~~~~a--~gps~~~~~wh~~~k~lq~~~~p~ga~~r~~~~ge~~a~~p~~ 464 (816)
T KOG3792|consen 387 QYKQKVDPDLVVDTKPSHRPRRTMEVRVNGLPAEA--EGPSKKTAKWHAARKRLQNEGRPTGAAQRFGRMGEDPASMPEP 464 (816)
T ss_pred eeccccCCCceeccCCcccchhhhhhhhcCCcccc--CCcccccchHHHHHHHhhccCCCccccccccccCCCcccCCCC
Confidence 777 5 678999999999999999999843 799999999999999998874310 0
Q ss_pred ------CCC------------C----------------CCccCcHHHHHHHHHHcCCCCCceeee-ccC-CCCCcceEEE
Q 038761 74 ------PPP------------P----------------NVQCRYKSVLQNYARRKNLDSPLYSSI-REG-PAHACSFKAR 117 (365)
Q Consensus 74 ------~~~------------~----------------~~~~~~~s~L~E~~qk~~l~~P~Y~~~-~~G-p~h~~~F~~~ 117 (365)
+.+ | ...+++...|+|- .++ -.|++. +.| -.|.++|...
T Consensus 465 ~~r~~as~ddr~a~~~~a~~~Pt~~~l~nVqr~vs~~~~alK~vsd~L~Ek--~rg---~k~El~set~~gs~~~R~v~g 539 (816)
T KOG3792|consen 465 KGRRPASVDDRHANEKHAGIYPTEEELENVQRQVSHLERALKLVSDELAEK--RRG---DKYELPSETGTGSHDKRFVKG 539 (816)
T ss_pred CCcccCCCcchhhhccccccCccHHHHHHHHHhhhHHHHhhcchhHHHhhh--ccc---cceecccccCCCCCCceeeee
Confidence 000 0 1234445555553 222 246666 344 6799999999
Q ss_pred EEEcCeEEEeccccccHHHHHHHHHHHHHHHhc
Q 038761 118 VTIDGHTFESLEFFKNLKQAEHAAAKVALFSLA 150 (365)
Q Consensus 118 v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~ 150 (365)
|.+.|+.|. |.+.+++.|+..|+..++.-+.
T Consensus 540 V~rvG~~ak--G~~~~gd~a~~~a~Lca~~pt~ 570 (816)
T KOG3792|consen 540 VMRVGILAK--GLLLNGDRAVELALLCAEKPTS 570 (816)
T ss_pred eeeeehhhc--cccccchHHHHHHHHhccCccc
Confidence 999999995 5799999999999999988764
No 36
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.00045 Score=66.09 Aligned_cols=68 Identities=15% Similarity=0.253 Sum_probs=60.8
Q ss_pred hHHHHHHHHHhcCCCCCeEEe-eecC-CCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761 2 YKTKVQELCHQKRWSLPRYST-MKDG-ADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS 70 (365)
Q Consensus 2 ~Ks~LqE~cqk~~~~~P~Y~~-~~~G-p~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~ 70 (365)
|...|-++|++++..-|++++ .++| ..-.|.|.|.++-|.+.++.| .|.|-|.|++.||.+||..+=.
T Consensus 234 P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGqG-~Gesl~~A~e~AA~dAL~k~y~ 303 (333)
T KOG3769|consen 234 PRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQG-QGESLKLAEEQAARDALIKLYD 303 (333)
T ss_pred hHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhccC-cchHHHHHHHHHHHHHHHHHHc
Confidence 677899999999999999999 5555 456799999999999999997 9999999999999999998754
No 37
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]
Probab=96.70 E-value=0.0017 Score=68.41 Aligned_cols=130 Identities=19% Similarity=0.038 Sum_probs=89.7
Q ss_pred ccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhcc-CChh---------hh--------HHHh---hh
Q 038761 105 REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLAC-DDFQ---------EA--------IFLY---AH 163 (365)
Q Consensus 105 ~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~-~g~~---------~~--------~~~~---~~ 163 (365)
..+|.|.++|++++++++..+++ .|.+||.|+-.||++.|+...- .|.. .+ .+.. .+
T Consensus 399 ~t~P~~~~~~t~e~r~~~~~~~a--~gps~~~~~wh~~~k~lq~~~~p~ga~~r~~~~ge~~a~~p~~~~r~~as~ddr~ 476 (816)
T KOG3792|consen 399 DTKPSHRPRRTMEVRVNGLPAEA--EGPSKKTAKWHAARKRLQNEGRPTGAAQRFGRMGEDPASMPEPKGRRPASVDDRH 476 (816)
T ss_pred ccCCcccchhhhhhhhcCCcccc--CCcccccchHHHHHHHhhccCCCccccccccccCCCcccCCCCCCcccCCCcchh
Confidence 78999999999999999999986 6999999999999999998721 0100 00 0000 00
Q ss_pred h---------c--------cc---ccCCCcchhhHHHHHHHhcCCCCCeEEEE-eeC-CCCCCeEEEEEEECCEEEeeEe
Q 038761 164 V---------S--------MY---LWDDGVFYKNVLHELSLREGLPVPLYETI-KCG-APHMPTFISMVEVDGEVFYGKA 221 (365)
Q Consensus 164 l---------~--------~~---~~~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~G-p~h~~~F~~~V~i~g~~~~~G~ 221 (365)
. + .. +.....+....|+|- + ....|++. +.| -.|.++|+..|.+.|.. ..|.
T Consensus 477 a~~~~a~~~Pt~~~l~nVqr~vs~~~~alK~vsd~L~Ek---~--rg~k~El~set~~gs~~~R~v~gV~rvG~~-akG~ 550 (816)
T KOG3792|consen 477 ANEKHAGIYPTEEELENVQRQVSHLERALKLVSDELAEK---R--RGDKYELPSETGTGSHDKRFVKGVMRVGIL-AKGL 550 (816)
T ss_pred hhccccccCccHHHHHHHHHhhhHHHHhhcchhHHHhhh---c--cccceecccccCCCCCCceeeeeeeeeehh-hccc
Confidence 0 0 00 001123333344443 2 23367866 655 57999999999999976 4999
Q ss_pred ccCHHHHHHHHHHHHHHHHHh
Q 038761 222 GRTKKKAEMKAAKVAYTALIE 242 (365)
Q Consensus 222 G~SKK~Ae~~AA~~aL~~L~~ 242 (365)
+.++|-|+..|+..++..+..
T Consensus 551 ~~~gd~a~~~a~Lca~~pt~~ 571 (816)
T KOG3792|consen 551 LLNGDRAVELALLCAEKPTSG 571 (816)
T ss_pred cccchHHHHHHHHhccCcccc
Confidence 999999999999888776643
No 38
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=96.37 E-value=0.024 Score=45.36 Aligned_cols=64 Identities=28% Similarity=0.201 Sum_probs=42.6
Q ss_pred hhHHHHHHHhcC-----CCCCeEEEEeeCCCCCCeEEEEEEECC----EEEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761 176 KNVLHELSLREG-----LPVPLYETIKCGAPHMPTFISMVEVDG----EVFYGKAGRTKKKAEMKAAKVAYTALIER 243 (365)
Q Consensus 176 ks~LqE~~qk~~-----~~~P~Y~~~~~Gp~h~~~F~~~V~i~g----~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~ 243 (365)
++.|+.||++.- ...|.|.+...+. .|.|+|.+=. +.+....-.||+.||+.||-.|...|...
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~----~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~ 74 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS----GFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHEA 74 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEEE--G-----EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEEEcCC----cEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHHc
Confidence 578999998843 2578999886542 7999998721 12322357899999999999999999875
No 39
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=96.25 E-value=0.011 Score=47.25 Aligned_cols=65 Identities=22% Similarity=0.182 Sum_probs=42.4
Q ss_pred HHHHHHHHHHcCC-----CCCceeeeccCCCCCcceEEEEEEcCe----EEEeccccccHHHHHHHHHHHHHHHhccCC
Q 038761 84 KSVLQNYARRKNL-----DSPLYSSIREGPAHACSFKARVTIDGH----TFESLEFFKNLKQAEHAAAKVALFSLACDD 153 (365)
Q Consensus 84 ~s~L~E~~qk~~l-----~~P~Y~~~~~Gp~h~~~F~~~v~I~g~----~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g 153 (365)
++.|+.||++..- ..|.|.+...+. .|.|+|.+-.. .+.+ ....+|+.||+.||..|++.|.+.|
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~----~~~c~v~LP~~~pi~~i~g-~~~~sk~~AK~sAAf~Ac~~L~~~g 75 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS----GFICTVILPINSPIRSIEG-PPMRSKKLAKRSAAFEACKKLHEAG 75 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEEE--G-----EEEEEE--TT-SS--EEE-E--SSHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEEEcCC----cEEEEEECCCCCCCCeEEc-cccccHHHHHHHHHHHHHHHHHHcC
Confidence 6789999987642 246777765543 69999998532 2333 3578999999999999999997555
No 40
>PF14954 LIX1: Limb expression 1
Probab=95.08 E-value=0.055 Score=49.79 Aligned_cols=70 Identities=20% Similarity=0.276 Sum_probs=52.3
Q ss_pred CccCcHHHHHHHHH---HcCCCCCceeee--ccCCCCCcceEEEEEE-cCeEEEeccccccHHHHHHHHHHHHHHH
Q 038761 79 VQCRYKSVLQNYAR---RKNLDSPLYSSI--REGPAHACSFKARVTI-DGHTFESLEFFKNLKQAEHAAAKVALFS 148 (365)
Q Consensus 79 ~~~~~~s~L~E~~q---k~~l~~P~Y~~~--~~Gp~h~~~F~~~v~I-~g~~~~~~g~g~sKK~AK~~AA~~aL~~ 148 (365)
...|-+..|||+=| ..+..++.-.++ +..|...+-|.|-|++ +|-.|+....+.||-+|++.||+.||..
T Consensus 19 ~~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs~ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALmN 94 (252)
T PF14954_consen 19 GDVNVVEALQEFWQMKQSRGADLKSEALVVYESVPSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALMN 94 (252)
T ss_pred ccchHHHHHHHHHHHHHhccccCCCCCeeeeeccCCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHHH
Confidence 34577899999854 334444433222 4566667789999999 5678887778999999999999999985
No 41
>PF14954 LIX1: Limb expression 1
Probab=93.87 E-value=0.13 Score=47.27 Aligned_cols=70 Identities=21% Similarity=0.232 Sum_probs=49.6
Q ss_pred CCcchhhHHHHHHHhc---CCCCCeEE--EEeeCCCCCCeEEEEEEE-CCEEEee-EeccCHHHHHHHHHHHHHHHH
Q 038761 171 DGVFYKNVLHELSLRE---GLPVPLYE--TIKCGAPHMPTFISMVEV-DGEVFYG-KAGRTKKKAEMKAAKVAYTAL 240 (365)
Q Consensus 171 ~~~n~ks~LqE~~qk~---~~~~P~Y~--~~~~Gp~h~~~F~~~V~i-~g~~~~~-G~G~SKK~Ae~~AA~~aL~~L 240 (365)
...|-+..|||+=|.. +-.++.=. +.+..|...+-|+|-|++ +|-+|+. ....||-+|++.||+.||-.-
T Consensus 19 ~~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs~ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALmNS 95 (252)
T PF14954_consen 19 GDVNVVEALQEFWQMKQSRGADLKSEALVVYESVPSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALMNS 95 (252)
T ss_pred ccchHHHHHHHHHHHHHhccccCCCCCeeeeeccCCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHHHH
Confidence 4578889999976553 32222211 225566777889999999 5656653 568999999999999998654
No 42
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=91.55 E-value=0.26 Score=54.11 Aligned_cols=71 Identities=21% Similarity=0.254 Sum_probs=62.5
Q ss_pred CcHHHHHHHHHHcCCCCCceeeeccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccCC
Q 038761 82 RYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDD 153 (365)
Q Consensus 82 ~~~s~L~E~~qk~~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g 153 (365)
+-+..|..||.++.+. |.|.+..+|+....+|.|.|.+.+..+...+...+||+|..+||+.-+++|-..|
T Consensus 2 d~k~fly~~~~k~~~~-p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr~G 72 (1282)
T KOG0921|consen 2 DVKEFLYAWLGKNKYG-PTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVREG 72 (1282)
T ss_pred cHHHHHHHHHhhhccC-cceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhhhc
Confidence 4578899999999986 8899998888888899999999999988777888999999999999999986443
No 43
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=88.65 E-value=0.16 Score=51.21 Aligned_cols=67 Identities=25% Similarity=0.342 Sum_probs=58.3
Q ss_pred hHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCC
Q 038761 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSP 71 (365)
Q Consensus 2 ~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~ 71 (365)
+|..|..||-+.+..-|.|++... .++.|...+.+.|+.|.++-+-.++|.|+|.||..+|+.....
T Consensus 377 ~k~~l~~~~~~~~~~~~~ye~~~~---~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s~l~ 443 (477)
T KOG2334|consen 377 PKMVLADLCVKTKANGPVYETVQR---TDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKSNLW 443 (477)
T ss_pred HHHHHHHhhhhhcCCCcchhhhhh---hhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhcCcc
Confidence 688999999999999999999331 4568999999999999887679999999999999999987653
No 44
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=84.50 E-value=0.44 Score=48.21 Aligned_cols=69 Identities=26% Similarity=0.291 Sum_probs=60.4
Q ss_pred CccCcHHHHHHHHHHcCCCCCceeeeccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhc
Q 038761 79 VQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLA 150 (365)
Q Consensus 79 ~~~~~~s~L~E~~qk~~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~ 150 (365)
....++..|..||.+.+..-|.|+++.. .+..|...++++|..|.+...-+++|.|+|.||..+|....
T Consensus 373 ~~~~~k~~l~~~~~~~~~~~~~ye~~~~---~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s~ 441 (477)
T KOG2334|consen 373 KWDTPKMVLADLCVKTKANGPVYETVQR---TDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKSN 441 (477)
T ss_pred CCCCHHHHHHHhhhhhcCCCcchhhhhh---hhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhcC
Confidence 3457899999999999999999999854 35689999999999998877899999999999999998863
No 45
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=79.59 E-value=1.7 Score=33.62 Aligned_cols=21 Identities=38% Similarity=0.827 Sum_probs=15.9
Q ss_pred ccc--CCceEEeccCCeEEEEee
Q 038761 337 AFP--KGITLMPISEDKWVAVSL 357 (365)
Q Consensus 337 ~~~--~~~~~~~~~~~~~~~~~~ 357 (365)
.+| +|=||.|++|+.||||+.
T Consensus 23 ilPg~~~PTVs~L~~~~w~AV~~ 45 (75)
T PF08029_consen 23 ILPGLKSPTVSPLADEDWVAVHA 45 (75)
T ss_dssp HS--SSS-EEEE-SSTTEEEEEE
T ss_pred hCCCCCCCceeecCCCCEEEEEE
Confidence 466 889999999999999975
No 46
>PF02169 LPP20: LPP20 lipoprotein; InterPro: IPR002217 A major antigen has been recognised in Helicobacter pylori, a protein with an apparent molecular weight of 20,000 and mass 18,283 kDa []. DNA sequence analysis revealed a 525 bp gene, encoding a 175-amino acid residue product with a typical 21-residue lipoprotein signal peptide and consensus prolipoprotein processing site []. Results of experimental work with Lpp20 are consistent with it being a nonessential lipoprotein []. Prokaryotic membrane lipoproteins are synthesised with precursor signal peptides that are cleaved by specific peptidases (signal peptidase II). The enzyme recognises a conserved sequence, cutting upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [].; GO: 0009279 cell outer membrane
Probab=50.89 E-value=24 Score=27.38 Aligned_cols=29 Identities=10% Similarity=0.095 Sum_probs=23.6
Q ss_pred CEEEeeEeccCHHHHHHHHHHHHHHHHHh
Q 038761 214 GEVFYGKAGRTKKKAEMKAAKVAYTALIE 242 (365)
Q Consensus 214 g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~ 242 (365)
...++.|.|.+.+.|+++|-..+.++|..
T Consensus 12 ~~l~a~G~~~~~~~A~~~A~~~la~~i~~ 40 (92)
T PF02169_consen 12 QYLYAVGSGSSREQAKQDALANLAEQISV 40 (92)
T ss_pred cEEEEEEcccChHHHHHHHHHHHHHheeE
Confidence 34678999999999999888888886654
No 47
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=43.95 E-value=14 Score=30.04 Aligned_cols=18 Identities=39% Similarity=0.850 Sum_probs=15.3
Q ss_pred CCceEEeccCCeEEEEee
Q 038761 340 KGITLMPISEDKWVAVSL 357 (365)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~ 357 (365)
+|=||.|..|+.||||..
T Consensus 52 ~~PTVs~l~~~~w~AV~~ 69 (100)
T TIGR03455 52 EGPTVSPLADEGWVAVHA 69 (100)
T ss_pred CCCCcCcCCCCCeEEEEE
Confidence 367899998889999985
No 48
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=29.39 E-value=41 Score=40.04 Aligned_cols=67 Identities=22% Similarity=0.233 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEE--------------EEEECCEEEeecccccCcchHHHHHHHHHHHh
Q 038761 3 KTKVQELCHQKRWSLPRYST-MKDGADHDPRFKS--------------SVSVNGLSFHSSVSCKSSKESQNDAAKLAFLH 67 (365)
Q Consensus 3 Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~--------------~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~ 67 (365)
+..+++.|-...|..|-+.. .+.++.|..++.. +|.+.+.....| .|..++.||..|++.|++.
T Consensus 1517 sg~~~~~~~~~~~a~p~~s~~~E~~~~h~~~~~~~~~~k~~d~~~~~~tv~~~~~~~~~~-~g~~~~~aK~s~~k~A~~l 1595 (1606)
T KOG0701|consen 1517 SGNMMEPCIEKFWALPPRSPIRELLELHPERALFGKCEKVADAGKVRVTVDVFNKEVFAG-EGRNYRIAKASAAKAALKL 1595 (1606)
T ss_pred cccccchHhhcCcCCCCccchhhhccccceeeccchhhhhhhccceEEEEEecccchhhh-cchhhhhhhhhHHHHHHHH
Confidence 45678999999999999988 5667777554433 444455554454 7999999999999988887
Q ss_pred cCC
Q 038761 68 FTS 70 (365)
Q Consensus 68 L~~ 70 (365)
|..
T Consensus 1596 l~~ 1598 (1606)
T KOG0701|consen 1596 LKK 1598 (1606)
T ss_pred HHH
Confidence 654
No 49
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=27.70 E-value=2e+02 Score=19.56 Aligned_cols=20 Identities=40% Similarity=0.260 Sum_probs=13.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHh
Q 038761 222 GRTKKKAEMKAAKVAYTALIE 242 (365)
Q Consensus 222 G~SKK~Ae~~AA~~aL~~L~~ 242 (365)
..||++|+..+++ ++..+.+
T Consensus 24 F~TkkeA~~~~~~-~~~~~~~ 43 (46)
T PF14657_consen 24 FKTKKEAEKALAK-IEAELEN 43 (46)
T ss_pred CCcHHHHHHHHHH-HHHHHHc
Confidence 4899999985555 5555543
No 50
>PF14600 CBM_5_12_2: Cellulose-binding domain; PDB: 1AIW_A.
Probab=27.11 E-value=31 Score=25.59 Aligned_cols=33 Identities=27% Similarity=0.637 Sum_probs=19.7
Q ss_pred cceEEEecCCCcccccCC-----------------------ceEEeccCCeEEEEe
Q 038761 324 CNRVRVYTRIPDIAFPKG-----------------------ITLMPISEDKWVAVS 356 (365)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~ 356 (365)
|..|.|||.+|.-...-| ..-+|=||+.|.-|.
T Consensus 4 c~~in~YPnw~~~DwaGG~p~HA~~GD~mv~~g~~Y~AnWwT~SvPGSD~SWt~~~ 59 (62)
T PF14600_consen 4 CAGINVYPNWPQKDWAGGNPSHANAGDQMVYQGAVYQANWWTNSVPGSDGSWTLVC 59 (62)
T ss_dssp SSSS-BTT--SBSSSSSS---BEEBT-EEEETTEEEEESSEE-S-TTSSTTEEEEE
T ss_pred ccccccCCCCcccccCCCCcCcccccCEEEEcCcEEEEeeEeccCCCCcccceeee
Confidence 456899999998777654 233677888887654
No 51
>PF02169 LPP20: LPP20 lipoprotein; InterPro: IPR002217 A major antigen has been recognised in Helicobacter pylori, a protein with an apparent molecular weight of 20,000 and mass 18,283 kDa []. DNA sequence analysis revealed a 525 bp gene, encoding a 175-amino acid residue product with a typical 21-residue lipoprotein signal peptide and consensus prolipoprotein processing site []. Results of experimental work with Lpp20 are consistent with it being a nonessential lipoprotein []. Prokaryotic membrane lipoproteins are synthesised with precursor signal peptides that are cleaved by specific peptidases (signal peptidase II). The enzyme recognises a conserved sequence, cutting upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [].; GO: 0009279 cell outer membrane
Probab=24.81 E-value=57 Score=25.15 Aligned_cols=26 Identities=12% Similarity=-0.036 Sum_probs=21.8
Q ss_pred EEeccccccHHHHHHHHHHHHHHHhc
Q 038761 125 FESLEFFKNLKQAEHAAAKVALFSLA 150 (365)
Q Consensus 125 ~~~~g~g~sKK~AK~~AA~~aL~~L~ 150 (365)
+.+.|.|.+++.|+++|-..+...|.
T Consensus 14 l~a~G~~~~~~~A~~~A~~~la~~i~ 39 (92)
T PF02169_consen 14 LYAVGSGSSREQAKQDALANLAEQIS 39 (92)
T ss_pred EEEEEcccChHHHHHHHHHHHHHhee
Confidence 45567899999999999999988774
No 52
>PRK03065 hutP anti-terminator HutP; Provisional
Probab=23.89 E-value=65 Score=28.12 Aligned_cols=10 Identities=50% Similarity=1.106 Sum_probs=8.3
Q ss_pred cCCeEEEEee
Q 038761 348 SEDKWVAVSL 357 (365)
Q Consensus 348 ~~~~~~~~~~ 357 (365)
.||+||||.|
T Consensus 116 ~dg~WIaVa~ 125 (148)
T PRK03065 116 KEGEWIAVAL 125 (148)
T ss_pred CCCcEEEEEE
Confidence 4899999986
No 53
>COG1944 Uncharacterized conserved protein [Function unknown]
Probab=23.59 E-value=2.5e+02 Score=28.73 Aligned_cols=66 Identities=18% Similarity=0.096 Sum_probs=41.5
Q ss_pred hhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEE--CCEEEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761 175 YKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEV--DGEVFYGKAGRTKKKAEMKAAKVAYTALIER 243 (365)
Q Consensus 175 ~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i--~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~ 243 (365)
-...+|.++...|+.- .-+++ -+. -.-+.|.+ +.. -+..+.-|.|.||++|+-.|...+++.+.-.
T Consensus 19 t~~~~q~~l~~~gitr-I~~~t~Ld~-~gIPv~~a-~rp~~~~~~~~~GKGat~~~A~vSAimE~~Er~sAe 87 (398)
T COG1944 19 TLAAFQPLLAALGITR-IEDITWLDR-LGIPVVWA-VRPRALGLSVSQGKGATKAAARVSALMEALERLSAE 87 (398)
T ss_pred HHHHHHHHHHhcCcee-eeeeecccc-CCCceEEE-eeeccccceeecCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 4567777777776653 22333 111 11232222 222 2456778999999999999999999988543
No 54
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=21.74 E-value=49 Score=20.10 Aligned_cols=17 Identities=24% Similarity=0.589 Sum_probs=13.8
Q ss_pred cccCCceEEeccCCeEEE
Q 038761 337 AFPKGITLMPISEDKWVA 354 (365)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~ 354 (365)
..|-|++|- -.++.|||
T Consensus 2 ~~P~gvav~-~~g~i~Va 18 (28)
T PF01436_consen 2 NYPHGVAVD-SDGNIYVA 18 (28)
T ss_dssp SSEEEEEEE-TTSEEEEE
T ss_pred cCCcEEEEe-CCCCEEEE
Confidence 468999999 67778887
Done!