Query 038761
Match_columns 365
No_of_seqs 245 out of 2543
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 04:19:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038761.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038761hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qu6_A Protein kinase PKR; dsR 100.0 9.3E-32 3.2E-36 240.8 13.6 147 1-151 14-172 (179)
2 1qu6_A Protein kinase PKR; dsR 100.0 1.6E-30 5.5E-35 232.7 13.5 161 80-244 12-174 (179)
3 2yt4_A Protein DGCR8; DSRBD, R 99.9 1.6E-27 5.5E-32 221.5 16.1 143 1-151 23-198 (232)
4 2yt4_A Protein DGCR8; DSRBD, R 99.9 1.3E-26 4.3E-31 215.5 13.4 163 79-249 20-205 (232)
5 2l3j_A Double-stranded RNA-spe 99.9 1.9E-24 6.3E-29 201.4 17.8 140 1-151 5-225 (236)
6 2l3j_A Double-stranded RNA-spe 99.9 2.3E-23 7.9E-28 194.0 17.2 153 81-243 4-226 (236)
7 1di2_A XLRBPA, double stranded 99.8 1.9E-20 6.3E-25 141.9 7.5 67 1-69 1-68 (69)
8 3adg_A F21M12.9 protein; HYL1, 99.8 8.2E-20 2.8E-24 139.8 9.3 68 1-69 4-72 (73)
9 3adj_A F21M12.9 protein; HYL1, 99.8 7.9E-20 2.7E-24 141.0 7.8 69 1-70 5-74 (76)
10 3adg_A F21M12.9 protein; HYL1, 99.8 5.7E-19 2E-23 135.1 10.2 70 172-241 2-72 (73)
11 3adl_A RISC-loading complex su 99.8 1E-18 3.5E-23 138.5 11.7 76 169-245 11-87 (88)
12 3adl_A RISC-loading complex su 99.8 3.4E-19 1.1E-23 141.3 8.7 69 1-71 16-85 (88)
13 3adj_A F21M12.9 protein; HYL1, 99.8 5.2E-19 1.8E-23 136.5 9.5 71 172-242 3-74 (76)
14 2khx_A Ribonuclease 3; drosha, 99.8 5E-19 1.7E-23 139.4 7.5 69 1-70 2-76 (85)
15 1uhz_A Staufen (RNA binding pr 99.8 9.5E-19 3.3E-23 139.0 9.0 69 1-71 7-76 (89)
16 1di2_A XLRBPA, double stranded 99.8 1.7E-18 5.7E-23 131.0 9.8 66 175-241 2-68 (69)
17 2cpn_A TAR RNA-binding protein 99.8 8.8E-19 3E-23 139.2 8.6 68 1-70 17-85 (89)
18 2cpn_A TAR RNA-binding protein 99.8 4.2E-18 1.4E-22 135.3 11.5 73 170-243 13-86 (89)
19 1ekz_A DSRBDIII, maternal effe 99.8 6.6E-19 2.3E-23 135.8 6.6 67 1-70 8-75 (76)
20 2dix_A Interferon-inducible do 99.8 2.6E-18 8.8E-23 135.1 9.3 67 1-70 9-76 (84)
21 1uhz_A Staufen (RNA binding pr 99.7 9.3E-18 3.2E-22 133.3 11.4 70 172-242 5-75 (89)
22 2l2n_A Hyponastic leave 1; DSR 99.7 2.6E-18 9E-23 140.1 8.0 69 1-70 18-87 (103)
23 2dix_A Interferon-inducible do 99.7 1.2E-17 4E-22 131.3 10.9 71 171-243 6-77 (84)
24 2b7t_A Double-stranded RNA-spe 99.7 2.8E-18 9.7E-23 131.3 7.2 67 1-71 5-72 (73)
25 2l2n_A Hyponastic leave 1; DSR 99.7 1.1E-17 3.8E-22 136.3 10.2 76 170-245 14-90 (103)
26 3llh_A RISC-loading complex su 99.7 6.1E-18 2.1E-22 134.6 8.3 68 1-71 15-83 (90)
27 2khx_A Ribonuclease 3; drosha, 99.7 4.2E-18 1.4E-22 134.1 6.9 70 173-242 1-76 (85)
28 1x49_A Interferon-induced, dou 99.7 3.6E-18 1.2E-22 137.8 6.3 70 1-72 15-85 (97)
29 1x49_A Interferon-induced, dou 99.7 1.2E-17 4.1E-22 134.7 9.4 72 171-243 12-84 (97)
30 1whq_A RNA helicase A; double- 99.7 3.1E-18 1.1E-22 138.6 6.0 68 1-70 7-75 (99)
31 1x48_A Interferon-induced, dou 99.7 5.6E-18 1.9E-22 134.3 7.2 69 1-72 7-76 (88)
32 1ekz_A DSRBDIII, maternal effe 99.7 3.1E-18 1.1E-22 132.0 4.9 70 171-242 5-75 (76)
33 1x48_A Interferon-induced, dou 99.7 4.4E-17 1.5E-21 129.1 11.0 74 171-246 4-78 (88)
34 2b7t_A Double-stranded RNA-spe 99.7 2.5E-17 8.7E-22 125.9 9.3 69 172-243 3-72 (73)
35 1whq_A RNA helicase A; double- 99.7 2.7E-17 9.3E-22 133.1 8.8 72 172-244 5-77 (99)
36 1t4n_A Ribonuclease III; DSRBD 99.7 6.8E-18 2.3E-22 134.7 5.2 66 1-68 7-73 (94)
37 1uil_A Double-stranded RNA-bin 99.7 5.9E-17 2E-21 134.1 10.7 80 172-254 25-109 (113)
38 3llh_A RISC-loading complex su 99.7 5E-17 1.7E-21 129.3 9.7 72 170-243 11-83 (90)
39 1uil_A Double-stranded RNA-bin 99.7 2E-17 6.7E-22 137.0 7.5 68 1-70 27-99 (113)
40 2dmy_A Spermatid perinuclear R 99.7 3.8E-17 1.3E-21 131.8 8.3 67 1-71 17-84 (97)
41 1x47_A DGCR8 protein; structur 99.7 1.3E-16 4.4E-21 128.9 11.2 75 171-247 14-89 (98)
42 1x47_A DGCR8 protein; structur 99.7 5.5E-17 1.9E-21 131.1 8.6 67 1-70 17-84 (98)
43 2l33_A Interleukin enhancer-bi 99.7 4.3E-17 1.5E-21 129.8 7.5 67 1-71 15-82 (91)
44 1t4n_A Ribonuclease III; DSRBD 99.7 2.8E-17 9.7E-22 131.1 6.4 72 171-243 4-76 (94)
45 1t4o_A Ribonuclease III; RNT1P 99.7 4.1E-17 1.4E-21 134.7 6.0 66 1-68 9-75 (117)
46 2dmy_A Spermatid perinuclear R 99.7 3.2E-16 1.1E-20 126.4 10.3 70 170-242 13-83 (97)
47 2l33_A Interleukin enhancer-bi 99.7 3.7E-16 1.3E-20 124.4 9.5 70 171-243 12-82 (91)
48 1whn_A Hypothetical protein ri 99.7 2E-16 6.9E-21 133.5 8.3 68 1-71 27-95 (128)
49 1t4o_A Ribonuclease III; RNT1P 99.6 2E-16 6.9E-21 130.5 7.8 72 171-243 6-78 (117)
50 2ljh_A Double-stranded RNA-spe 99.6 2.9E-16 9.8E-21 129.9 7.9 65 1-72 38-103 (114)
51 2ljh_A Double-stranded RNA-spe 99.6 1.3E-15 4.5E-20 125.9 10.3 69 169-243 33-102 (114)
52 1whn_A Hypothetical protein ri 99.6 9.4E-16 3.2E-20 129.4 9.2 70 171-242 24-94 (128)
53 2b7v_A Double-stranded RNA-spe 99.6 5E-15 1.7E-19 112.5 9.3 67 171-243 2-69 (71)
54 2b7v_A Double-stranded RNA-spe 99.6 4.8E-15 1.6E-19 112.6 7.3 62 1-69 5-67 (71)
55 2nug_A Ribonuclease III, RNAse 99.6 3.4E-14 1.2E-18 130.6 14.2 136 81-242 74-219 (221)
56 1o0w_A Ribonuclease III, RNAse 99.5 1.9E-14 6.7E-19 134.9 11.9 144 81-243 100-250 (252)
57 3p1x_A Interleukin enhancer-bi 99.5 1.2E-14 4E-19 111.7 7.3 66 2-71 6-72 (75)
58 3p1x_A Interleukin enhancer-bi 99.5 4.6E-14 1.6E-18 108.4 9.6 66 175-243 6-72 (75)
59 2nug_A Ribonuclease III, RNAse 99.5 1.6E-14 5.3E-19 132.9 7.0 68 1-70 151-219 (221)
60 1o0w_A Ribonuclease III, RNAse 99.5 3.2E-14 1.1E-18 133.3 8.2 69 1-70 180-249 (252)
61 3n3w_A Ribonuclease III; nucle 99.5 8.4E-15 2.9E-19 137.1 2.7 143 81-242 98-247 (248)
62 2a11_A Ribonuclease III, RNAse 99.4 3.8E-14 1.3E-18 132.0 2.9 143 82-243 81-232 (242)
63 3n3w_A Ribonuclease III; nucle 99.4 1.6E-14 5.6E-19 135.1 0.0 69 1-70 178-247 (248)
64 2a11_A Ribonuclease III, RNAse 99.4 4.4E-14 1.5E-18 131.6 0.0 70 1-71 163-232 (242)
65 3rv0_A K. polysporus DCR1; RNA 99.2 9.5E-12 3.2E-16 121.3 3.8 146 81-248 167-326 (341)
66 3rv0_A K. polysporus DCR1; RNA 99.0 3.1E-11 1E-15 117.7 0.0 64 1-70 255-320 (341)
67 3c4b_A Endoribonuclease dicer; 98.8 1.2E-08 4.2E-13 95.8 9.4 109 130-242 151-263 (265)
68 3c4b_A Endoribonuclease dicer; 98.6 4.3E-08 1.5E-12 92.1 5.3 64 2-69 199-262 (265)
69 2kou_A Dicer-like protein 4; A 95.7 0.036 1.2E-06 44.3 7.6 69 173-243 4-81 (102)
70 2kou_A Dicer-like protein 4; A 95.1 0.027 9.2E-07 45.0 5.2 70 81-153 4-82 (102)
71 3htx_A HEN1; HEN1, small RNA m 88.4 0.49 1.7E-05 51.0 5.7 40 32-72 58-97 (950)
72 2db2_A KIAA0890 protein; DSRM 87.3 2.5 8.5E-05 34.0 7.8 73 171-245 15-92 (119)
73 3htx_A HEN1; HEN1, small RNA m 84.9 1.2 3.9E-05 48.2 6.2 71 172-246 16-99 (950)
74 2db2_A KIAA0890 protein; DSRM 80.1 1.6 5.4E-05 35.2 3.8 69 81-154 17-92 (119)
75 2qvw_A GLP_546_48378_50642; di 79.1 1.5 5.1E-05 46.7 4.5 111 81-244 372-499 (756)
76 2eki_A DRG 1, developmentally- 45.6 9.2 0.00032 29.7 1.8 29 318-346 3-40 (93)
77 3hvz_A Uncharacterized protein 36.7 9.7 0.00033 28.4 0.7 26 322-347 3-29 (78)
78 1nh8_A ATP phosphoribosyltrans 35.0 20 0.00069 33.8 2.7 18 340-357 255-272 (304)
79 2vd3_A ATP phosphoribosyltrans 31.8 25 0.00087 32.8 2.9 18 340-357 239-257 (289)
80 1ixd_A Cylindromatosis tumour- 21.2 1.2E+02 0.0042 23.7 4.6 39 319-360 16-58 (104)
No 1
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.97 E-value=9.3e-32 Score=240.77 Aligned_cols=147 Identities=20% Similarity=0.304 Sum_probs=130.0
Q ss_pred ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCCCCCCC---
Q 038761 1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPPPPPP--- 76 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~~~~~~--- 76 (365)
+||+.||||||++++. |.|++ .+.||+|.+.|++.|+|+|..++.| .|+|||+|||+||+.||+.|.....+..
T Consensus 14 n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G-~G~sKK~Aeq~AA~~al~~L~~~~~~~~p~~ 91 (179)
T 1qu6_A 14 FFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEG-EGRSKKEAKNAAAKLAVEILNKEKKAVSPLL 91 (179)
T ss_dssp SHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEE-ECCSSHHHHHHHHHHHHHHHHSCCSCCSCSS
T ss_pred CHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEec-CCCCHHHHHHHHHHHHHHHHhcccccCCCcc
Confidence 5899999999999987 89998 6789999999999999999988886 9999999999999999999976432100
Q ss_pred --------CCCccCcHHHHHHHHHHcCCCCCceeeeccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHH
Q 038761 77 --------PNVQCRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFS 148 (365)
Q Consensus 77 --------~~~~~~~~s~L~E~~qk~~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~ 148 (365)
.....+|+++||||||++++.+ .|++...|++|.+.|+++|+|+|..+. .|.|+|||+||+.||+.||..
T Consensus 92 ~~~~~~~e~~~~~n~~~~L~E~~qk~~~~~-~Y~~~~~G~~h~~~F~~~v~v~~~~~~-~g~g~sKK~Ak~~AA~~al~~ 169 (179)
T 1qu6_A 92 LTTTNSSEGLSMGNYIGLINRIAQKKRLTV-NYEQCASGVHGPEGFHYKCKMGQKEYS-IGTGSTKQEAKQLAAKLAYLQ 169 (179)
T ss_dssp CCCSCSSCCCCCCCCHHHHHHHHHHSCCEE-EEEEEEECSSSSSEEEEEEEEETTBCC-EEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCCcccccCCCCHHHHHHHHHHhcCCcc-eEEecCcCCCCCCeEEEEEEECCEEEe-eEEECCHHHHHHHHHHHHHHH
Confidence 1245789999999999999976 799888999999999999999999864 467999999999999999999
Q ss_pred hcc
Q 038761 149 LAC 151 (365)
Q Consensus 149 L~~ 151 (365)
|..
T Consensus 170 L~~ 172 (179)
T 1qu6_A 170 ILS 172 (179)
T ss_dssp HHH
T ss_pred Hhc
Confidence 953
No 2
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.97 E-value=1.6e-30 Score=232.72 Aligned_cols=161 Identities=23% Similarity=0.265 Sum_probs=134.4
Q ss_pred ccCcHHHHHHHHHHcCCCCCceeee-ccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccCChhhhH
Q 038761 80 QCRYKSVLQNYARRKNLDSPLYSSI-REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAI 158 (365)
Q Consensus 80 ~~~~~s~L~E~~qk~~l~~P~Y~~~-~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g~~~~~ 158 (365)
..+|++.||||||++++. |.|+++ ..||+|.+.|++.|.|+|..+. .|.|+|||+|++.||+.||..|...+... .
T Consensus 12 ~~n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~-~G~G~sKK~Aeq~AA~~al~~L~~~~~~~-~ 88 (179)
T 1qu6_A 12 AGFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFP-EGEGRSKKEAKNAAAKLAVEILNKEKKAV-S 88 (179)
T ss_dssp SCSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCC-EEECCSSHHHHHHHHHHHHHHHHSCCSCC-S
T ss_pred CCCHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEE-ecCCCCHHHHHHHHHHHHHHHHhcccccC-C
Confidence 368999999999999986 899987 6899999999999999998874 36899999999999999999996543210 0
Q ss_pred HHhhhhc-ccccCCCcchhhHHHHHHHhcCCCCCeEEEEeeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHH
Q 038761 159 FLYAHVS-MYLWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAY 237 (365)
Q Consensus 159 ~~~~~l~-~~~~~~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL 237 (365)
+...... ........||+++|+||||+++|.+ .|++.+.|+.|.+.|+++|+|+|..++.|.|.|||+||++||+.||
T Consensus 89 p~~~~~~~~~e~~~~~n~~~~L~E~~qk~~~~~-~Y~~~~~G~~h~~~F~~~v~v~~~~~~~g~g~sKK~Ak~~AA~~al 167 (179)
T 1qu6_A 89 PLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTV-NYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAY 167 (179)
T ss_dssp CSSCCCSCSSCCCCCCCCHHHHHHHHHHSCCEE-EEEEEEECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHH
T ss_pred CccCCCCCcccccCCCCHHHHHHHHHHhcCCcc-eEEecCcCCCCCCeEEEEEEECCEEEeeEEECCHHHHHHHHHHHHH
Confidence 0000000 0112245799999999999999987 9999899999999999999999988899999999999999999999
Q ss_pred HHHHhhc
Q 038761 238 TALIERK 244 (365)
Q Consensus 238 ~~L~~~~ 244 (365)
..|....
T Consensus 168 ~~L~~~~ 174 (179)
T 1qu6_A 168 LQILSEE 174 (179)
T ss_dssp HHHHHCC
T ss_pred HHHhccc
Confidence 9997653
No 3
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.95 E-value=1.6e-27 Score=221.50 Aligned_cols=143 Identities=17% Similarity=0.139 Sum_probs=118.0
Q ss_pred ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCCCCC--CC-
Q 038761 1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPPPP--PP- 76 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~~~~--~~- 76 (365)
+||+.||||||++++.+|.|++ .+.||+ +.|+|.|+|+|..++.| .|+|||+|||+||+.||..|....+. +.
T Consensus 23 d~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~~~G-~G~SKK~Aeq~AA~~aL~~L~~~~~~~~~~~ 99 (232)
T 2yt4_A 23 SEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSG-TASSKKLAKNKAARATLEILIPDFVKQTSEE 99 (232)
T ss_dssp CHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEETTEEEEEE-EESSHHHHHHHHHHHHHHHHSTTTTTC----
T ss_pred CHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEECCEEEeec-CCCCHHHHHHHHHHHHHHHHHhhccccCCcc
Confidence 5899999999999999999999 678988 99999999999999886 99999999999999999999763110 00
Q ss_pred ------------------C--------CCccCcHHHHHHHHHHcCCCCCcee--ee-ccCCCCCcceEEEEEEcCeEEEe
Q 038761 77 ------------------P--------NVQCRYKSVLQNYARRKNLDSPLYS--SI-REGPAHACSFKARVTIDGHTFES 127 (365)
Q Consensus 77 ------------------~--------~~~~~~~s~L~E~~qk~~l~~P~Y~--~~-~~Gp~h~~~F~~~v~I~g~~~~~ 127 (365)
+ ....+|++.||| |+++++++|.|+ ++ ..|++|.+.|+++|. +...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~--~~~~-- 174 (232)
T 2yt4_A 100 KPKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHE-CLKRNHGMGDTSIKFEVVPGKNQKSEYVMACG--KHTV-- 174 (232)
T ss_dssp ----CCGGGGGGGSBTTCTTHHHHHHHHTCCCHHHHHHH-HHHTSSSCCCEEEECC------CCEEEEEEET--TEEE--
T ss_pred ccccccchhhcccccccCCcccccccccCCCChhHHHHH-HHHcCCCCCceEEEEeecCCCCCCCEEEEEEE--EEEE--
Confidence 0 123588999999 999999999998 55 689999999998887 4443
Q ss_pred ccccccHHHHHHHHHHHHHHHhcc
Q 038761 128 LEFFKNLKQAEHAAAKVALFSLAC 151 (365)
Q Consensus 128 ~g~g~sKK~AK~~AA~~aL~~L~~ 151 (365)
.|.|+|||+||+.||+.||..|..
T Consensus 175 ~G~G~sKK~Aeq~AA~~aL~~L~~ 198 (232)
T 2yt4_A 175 RGWCKNKRVGKQLASQKILQLLHP 198 (232)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHST
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999963
No 4
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.94 E-value=1.3e-26 Score=215.46 Aligned_cols=163 Identities=21% Similarity=0.160 Sum_probs=126.0
Q ss_pred CccCcHHHHHHHHHHcCCCCCceeee-ccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccCChhh-
Q 038761 79 VQCRYKSVLQNYARRKNLDSPLYSSI-REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQE- 156 (365)
Q Consensus 79 ~~~~~~s~L~E~~qk~~l~~P~Y~~~-~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g~~~- 156 (365)
...+|++.||||||++++..|.|+++ ..||+ +.|++.|.|+|..+.. |.|+|||+|++.||+.||..|... +..
T Consensus 20 ~~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~~~-G~G~SKK~Aeq~AA~~aL~~L~~~-~~~~ 95 (232)
T 2yt4_A 20 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGS-GTASSKKLAKNKAARATLEILIPD-FVKQ 95 (232)
T ss_dssp TTSCHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEETTEEEEE-EEESSHHHHHHHHHHHHHHHHSTT-TTTC
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEECCEEEee-cCCCCHHHHHHHHHHHHHHHHHhh-cccc
Confidence 56799999999999999999999997 57887 8999999999998864 689999999999999999999653 111
Q ss_pred hHH----------Hhhhhc--cc------ccCCCcchhhHHHHHHHhcCCCCCeEE--EE-eeCCCCCCeEEEEEEECCE
Q 038761 157 AIF----------LYAHVS--MY------LWDDGVFYKNVLHELSLREGLPVPLYE--TI-KCGAPHMPTFISMVEVDGE 215 (365)
Q Consensus 157 ~~~----------~~~~l~--~~------~~~~~~n~ks~LqE~~qk~~~~~P~Y~--~~-~~Gp~h~~~F~~~V~i~g~ 215 (365)
... ....+. +. ......|||++||| |+++++.+|.|+ +. +.||.|.+.|+++|. +
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~--~- 171 (232)
T 2yt4_A 96 TSEEKPKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHE-CLKRNHGMGDTSIKFEVVPGKNQKSEYVMACG--K- 171 (232)
T ss_dssp --------CCGGGGGGGSBTTCTTHHHHHHHHTCCCHHHHHHH-HHHTSSSCCCEEEECC------CCEEEEEEET--T-
T ss_pred CCccccccccchhhcccccccCCcccccccccCCCChhHHHHH-HHHcCCCCCceEEEEeecCCCCCCCEEEEEEE--E-
Confidence 000 000000 00 01234699999999 999999999999 44 789999999999886 4
Q ss_pred EEeeEeccCHHHHHHHHHHHHHHHHHhhcccCCC
Q 038761 216 VFYGKAGRTKKKAEMKAAKVAYTALIERKLIFSL 249 (365)
Q Consensus 216 ~~~~G~G~SKK~Ae~~AA~~aL~~L~~~~~~~~~ 249 (365)
.++.|.|.|||+||+.||+.||..|....+.+.+
T Consensus 172 ~~~~G~G~sKK~Aeq~AA~~aL~~L~~~~~~~~~ 205 (232)
T 2yt4_A 172 HTVRGWCKNKRVGKQLASQKILQLLHPHVKNWGS 205 (232)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHSTTCCBHHH
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHHHhhccchhH
Confidence 5679999999999999999999999876555544
No 5
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.92 E-value=1.9e-24 Score=201.39 Aligned_cols=140 Identities=28% Similarity=0.292 Sum_probs=119.0
Q ss_pred ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCCCC------
Q 038761 1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPPP------ 73 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~~~------ 73 (365)
++|+.|++|++. +.+|.|++ .+.||+|.+.|+++|+|+|..+ .| .|+|||+|||+||+.||+.|...+.
T Consensus 5 ~~K~~l~~l~e~--~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G-~G~SKK~Aeq~AA~~al~~l~~~~~~~~~~~ 80 (236)
T 2l3j_A 5 LPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EG-SGPTKKKAKLHAAEKALRSFVQFPNASEAHL 80 (236)
T ss_dssp CTHHHHHHHHHH--CSSCEEEEEEEESCTTSCEEEEEEEETTEEE-EE-EESHHHHHHHHHHHHHHHHHTTCSSCSCCCC
T ss_pred CCcCHHHHHhhc--CCCceEEEEeccCCCCCCeEEEEEEECCEEE-EE-ecCChHHHHHHHHHHHHHHHHhccccccchh
Confidence 589999999987 46789999 6789999999999999999986 65 9999999999999999998865210
Q ss_pred ------CC--------------------C-----------------------------------------------CCCc
Q 038761 74 ------PP--------------------P-----------------------------------------------PNVQ 80 (365)
Q Consensus 74 ------~~--------------------~-----------------------------------------------~~~~ 80 (365)
++ + +...
T Consensus 81 amg~~~~~~~d~~~d~~~~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~ 160 (236)
T 2l3j_A 81 AMGRTLSVNTDFTSDQADFPDTLFNGFETPDKSEPPFYVGSNGDDSFSSSGDVSLSASPVPASLTQPPLPIPPPFPPPSG 160 (236)
T ss_dssp SCCCCCCCTTSCCSCCSCCCCCCCCCCCCSSSSCCCSSCSSSCSSSSSCSCCCSSCCCCCCCCSSSCSSSSCCCCCCCSS
T ss_pred hhccCCCCCCCCcccccccchhhcccccccccccccccccccccccccccchhhccccccccccccccCccccccCCCCC
Confidence 00 0 0023
Q ss_pred cCcHHHHHHHHHHcCCCCCceeee-ccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhcc
Q 038761 81 CRYKSVLQNYARRKNLDSPLYSSI-REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLAC 151 (365)
Q Consensus 81 ~~~~s~L~E~~qk~~l~~P~Y~~~-~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~ 151 (365)
.+|++.|||| ...|.|+++ ..|++|.+.|+++|.|+|..+ .|.|+|||+|++.||+.||..|..
T Consensus 161 ~d~ks~LqE~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~--~G~G~sKK~Aeq~AA~~al~~L~~ 225 (236)
T 2l3j_A 161 KNPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQFF--EGSGRNKKLAKARAAQSALATVFN 225 (236)
T ss_dssp CCHHHHHHHH-----CCCEEEEEECCSSSSSSCCEEEEEEETTEEE--EEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHhc-----CCCCcEEEEEeeCCCCCCeEEEEEEECCEEE--EeeeCCHHHHHHHHHHHHHHHHcc
Confidence 5899999999 457899987 689999999999999999987 368999999999999999999963
No 6
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.90 E-value=2.3e-23 Score=194.01 Aligned_cols=153 Identities=28% Similarity=0.318 Sum_probs=120.2
Q ss_pred cCcHHHHHHHHHHcCCCCCceeee-ccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccCCh-----
Q 038761 81 CRYKSVLQNYARRKNLDSPLYSSI-REGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDF----- 154 (365)
Q Consensus 81 ~~~~s~L~E~~qk~~l~~P~Y~~~-~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g~----- 154 (365)
.++++.|+++++.. ..|.|+++ ..||+|.+.|+++|.|+|..+ .|.|+|||+|++.||+.||..|.....
T Consensus 4 ~~~K~~l~~l~e~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~--~G~G~SKK~Aeq~AA~~al~~l~~~~~~~~~~ 79 (236)
T 2l3j_A 4 VLPKNALMQLNEIK--PGLQYMLLSQTGPVHAPLFVMSVEVNGQVF--EGSGPTKKKAKLHAAEKALRSFVQFPNASEAH 79 (236)
T ss_dssp CCTHHHHHHHHHHC--SSCEEEEEEEESCTTSCEEEEEEEETTEEE--EEEESHHHHHHHHHHHHHHHHHTTCSSCSCCC
T ss_pred CCCcCHHHHHhhcC--CCceEEEEeccCCCCCCeEEEEEEECCEEE--EEecCChHHHHHHHHHHHHHHHHhccccccch
Confidence 46778888877653 47899987 579999999999999999987 368999999999999999999864210
Q ss_pred -------h-hhHH----------Hhh---------h-------------------h----------ccc-------ccCC
Q 038761 155 -------Q-EAIF----------LYA---------H-------------------V----------SMY-------LWDD 171 (365)
Q Consensus 155 -------~-~~~~----------~~~---------~-------------------l----------~~~-------~~~~ 171 (365)
. ...+ +.. . + ... ....
T Consensus 80 ~amg~~~~~~~d~~~d~~~~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~ 159 (236)
T 2l3j_A 80 LAMGRTLSVNTDFTSDQADFPDTLFNGFETPDKSEPPFYVGSNGDDSFSSSGDVSLSASPVPASLTQPPLPIPPPFPPPS 159 (236)
T ss_dssp CSCCCCCCCTTSCCSCCSCCCCCCCCCCCCSSSSCCCSSCSSSCSSSSSCSCCCSSCCCCCCCCSSSCSSSSCCCCCCCS
T ss_pred hhhccCCCCCCCCcccccccchhhcccccccccccccccccccccccccccchhhccccccccccccccCccccccCCCC
Confidence 0 0000 000 0 0 000 0013
Q ss_pred CcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761 172 GVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER 243 (365)
Q Consensus 172 ~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~ 243 (365)
..|||++|||| +..|.|+++ +.||.|.++|++.|.|+|..+ .|.|.|||+|||+||+.||..|...
T Consensus 160 ~~d~ks~LqE~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~sKK~Aeq~AA~~al~~L~~~ 226 (236)
T 2l3j_A 160 GKNPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFNL 226 (236)
T ss_dssp SCCHHHHHHHH-----CCCEEEEEECCSSSSSSCCEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHhc-----CCCCcEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHccc
Confidence 47999999999 578999987 789999999999999999876 9999999999999999999999753
No 7
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=99.82 E-value=1.9e-20 Score=141.87 Aligned_cols=67 Identities=28% Similarity=0.447 Sum_probs=63.8
Q ss_pred ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcC
Q 038761 1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFT 69 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~ 69 (365)
|||+.||||||++++.+|.|++ .++||+|.+.|+|.|+|+|. ++.| .|+|||+|||.||+.||..|.
T Consensus 1 ~p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G-~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETG-SGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEe-ecCCHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999998 77899999999999999998 8886 999999999999999999875
No 8
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.81 E-value=8.2e-20 Score=139.85 Aligned_cols=68 Identities=25% Similarity=0.517 Sum_probs=64.1
Q ss_pred ChHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEECCEEEeecccc-cCcchHHHHHHHHHHHhcC
Q 038761 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSC-KSSKESQNDAAKLAFLHFT 69 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~gg~g-~SKK~Aeq~AA~~AL~~L~ 69 (365)
+||+.||||||++++.+|.|++..+||+|++.|+|.|+|+|..++.| .| +|||+|||+||+.||..|.
T Consensus 4 d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G-~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 4 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSL-PGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp SHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECC-SCBSSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEee-eccCCHHHHHHHHHHHHHHHhh
Confidence 69999999999999999999995569999999999999999999886 99 9999999999999999885
No 9
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=99.80 E-value=7.9e-20 Score=141.05 Aligned_cols=69 Identities=19% Similarity=0.434 Sum_probs=65.0
Q ss_pred ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761 1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS 70 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~ 70 (365)
+||+.||||||++++.+|.|++ .+.||+|.+.|+|.|+|+|..++.| .|+|||+|||+||+.||..|..
T Consensus 5 n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G-~G~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 5 LCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGA-ATRTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp HHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECC-CBSSHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEe-ccCCHHHHHHHHHHHHHHHHhh
Confidence 5899999999999999999999 6789999999999999999999886 9999999999999999998864
No 10
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.78 E-value=5.7e-19 Score=135.12 Aligned_cols=70 Identities=36% Similarity=0.511 Sum_probs=66.7
Q ss_pred CcchhhHHHHHHHhcCCCCCeEEEEeeCCCCCCeEEEEEEECCEEEeeEec-cCHHHHHHHHHHHHHHHHH
Q 038761 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAG-RTKKKAEMKAAKVAYTALI 241 (365)
Q Consensus 172 ~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~i~g~~~~~G~G-~SKK~Ae~~AA~~aL~~L~ 241 (365)
..|||+.||||||++++..|.|+++++||.|.+.|++.|.|+|..++.|.| .|||+||++||+.||..|.
T Consensus 2 ~~d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 2 SHVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp CCSHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence 369999999999999999999999977999999999999999999999999 9999999999999999885
No 11
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=138.49 Aligned_cols=76 Identities=24% Similarity=0.268 Sum_probs=68.7
Q ss_pred cCCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhhcc
Q 038761 169 WDDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKL 245 (365)
Q Consensus 169 ~~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~~~ 245 (365)
.....|||+.||||||+++++.|.|+++ +.||.|.+.|++.|.|+|. ++.|.|.|||+||++||+.||..|...++
T Consensus 11 ~~~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~p~ 87 (88)
T 3adl_A 11 VPRGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVHTVPL 87 (88)
T ss_dssp CCTTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHC---
T ss_pred CCCCCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHHccCC
Confidence 3456799999999999999999999987 7899999999999999997 89999999999999999999999987653
No 12
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=99.78 E-value=3.4e-19 Score=141.30 Aligned_cols=69 Identities=28% Similarity=0.407 Sum_probs=64.5
Q ss_pred ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCC
Q 038761 1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSP 71 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~ 71 (365)
+||+.||||||++++.+|.|++ .++||+|.+.|+|.|+|+|. ++.| .|+|||+|||+||+.||+.|...
T Consensus 16 d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G-~G~SKK~Aeq~AA~~AL~~L~~~ 85 (88)
T 3adl_A 16 HEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIG-SGTSKKLAKRNAAAKMLLRVHTV 85 (88)
T ss_dssp CHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEE-eeCCHHHHHHHHHHHHHHHHHcc
Confidence 6899999999999999999999 67899999999999999998 8886 99999999999999999999764
No 13
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=99.78 E-value=5.2e-19 Score=136.46 Aligned_cols=71 Identities=31% Similarity=0.436 Sum_probs=67.5
Q ss_pred CcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHh
Q 038761 172 GVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE 242 (365)
Q Consensus 172 ~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~ 242 (365)
..|||+.||||||++++..|.|+++ +.||.|.+.|++.|.|+|..++.|.|.|||+||+.||+.||..|..
T Consensus 3 ~~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 3 HGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp CHHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 4699999999999999999999987 7899999999999999999999999999999999999999999964
No 14
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=99.77 E-value=5e-19 Score=139.44 Aligned_cols=69 Identities=22% Similarity=0.281 Sum_probs=64.1
Q ss_pred ChHHHHHHHHHh-----cCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761 1 MYKTKVQELCHQ-----KRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS 70 (365)
Q Consensus 1 ~~Ks~LqE~cqk-----~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~ 70 (365)
+||+.||||||+ +++.+|.|++ .++||+|++.|+|.|+|+|..++.| .|+|||+|||+||+.||..|..
T Consensus 2 d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G-~G~SKK~AEq~AA~~AL~~L~~ 76 (85)
T 2khx_A 2 DPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCG-KGPSIQQAEMGAAMDALEKYNF 76 (85)
T ss_dssp CSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCE-EESSHHHHHHHHHHHHHTTCCS
T ss_pred CHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEE-eeCCHHHHHHHHHHHHHHHHhH
Confidence 699999999998 4678999999 6789999999999999999999886 9999999999999999999865
No 15
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.77 E-value=9.5e-19 Score=138.99 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=64.6
Q ss_pred ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCC
Q 038761 1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSP 71 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~ 71 (365)
+||+.||||||++++.+|.|++ .+.||+|++.|+|.|+|+|. ++.| .|+|||+|||+||+.||+.|...
T Consensus 7 d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G-~G~SKK~Aeq~AA~~AL~~L~~~ 76 (89)
T 1uhz_A 7 GPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATG-TGPNKKIAKKNAAEAMLLQLGYK 76 (89)
T ss_dssp CHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEE-eeCCHHHHHHHHHHHHHHHHhcc
Confidence 6999999999999999999999 67899999999999999997 7786 99999999999999999999763
No 16
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=99.77 E-value=1.7e-18 Score=131.04 Aligned_cols=66 Identities=26% Similarity=0.349 Sum_probs=63.4
Q ss_pred hhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHH
Q 038761 175 YKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALI 241 (365)
Q Consensus 175 ~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~ 241 (365)
||+.||||||++++..|.|+++ ++||+|.+.|++.|.|+|. ++.|.|.|||+||+.||+.||..|.
T Consensus 2 p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEeecCCHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999986 7899999999999999998 9999999999999999999999986
No 17
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.77 E-value=8.8e-19 Score=139.19 Aligned_cols=68 Identities=28% Similarity=0.419 Sum_probs=64.3
Q ss_pred ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761 1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS 70 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~ 70 (365)
+||+.||||||++++.+|.|++ .+.||+|.+.|+|.|+|+|. ++.| .|+|||+|||.||+.||..|..
T Consensus 17 d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G-~G~SKK~Aeq~AA~~AL~~L~~ 85 (89)
T 2cpn_A 17 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIG-SGTSKKLAKRNAAAKMLLRVSG 85 (89)
T ss_dssp CHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEe-eeCCHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999998 77899999999999999998 8886 9999999999999999999865
No 18
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.76 E-value=4.2e-18 Score=135.29 Aligned_cols=73 Identities=22% Similarity=0.246 Sum_probs=68.2
Q ss_pred CCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761 170 DDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER 243 (365)
Q Consensus 170 ~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~ 243 (365)
....|||++||||||++++.+|.|+++ +.||.|.+.|++.|.|+|. ++.|.|.|||+||+.||+.||..|...
T Consensus 13 ~~~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 86 (89)
T 2cpn_A 13 QSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVSGP 86 (89)
T ss_dssp CCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEeeeCCHHHHHHHHHHHHHHHHHhh
Confidence 346799999999999999999999986 7899999999999999998 899999999999999999999999753
No 19
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=99.76 E-value=6.6e-19 Score=135.81 Aligned_cols=67 Identities=15% Similarity=0.234 Sum_probs=62.8
Q ss_pred ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761 1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS 70 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~ 70 (365)
+||+.||||||++++. |.|++ .++||+|.+.|+|.|+|+| .++.| .|+|||+|||.||+.||..|..
T Consensus 8 d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G-~G~sKK~Aeq~AA~~aL~~L~~ 75 (76)
T 1ekz_A 8 SPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTEG-EGNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEEE-CCCSTTSSSHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEEE-eeCCHHHHHHHHHHHHHHHHhh
Confidence 5899999999999999 99998 7789999999999999999 78886 9999999999999999998864
No 20
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.75 E-value=2.6e-18 Score=135.06 Aligned_cols=67 Identities=21% Similarity=0.218 Sum_probs=62.5
Q ss_pred ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761 1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS 70 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~ 70 (365)
+||+.||||||+++ ..|.|++ .+.||+|.+.|+|.|+|+| .++.| .|+|||+|||+||+.||+.|..
T Consensus 9 d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G-~G~SKK~Aeq~AA~~aL~~L~~ 76 (84)
T 2dix_A 9 TPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCTG-EGTSKKLAKHRAAEAAINILKA 76 (84)
T ss_dssp CHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEEE-CSSCTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEEe-eeCCHHHHHHHHHHHHHHHHhc
Confidence 68999999999998 6899999 6789999999999999999 78886 9999999999999999999864
No 21
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.74 E-value=9.3e-18 Score=133.26 Aligned_cols=70 Identities=23% Similarity=0.185 Sum_probs=66.3
Q ss_pred CcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHh
Q 038761 172 GVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE 242 (365)
Q Consensus 172 ~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~ 242 (365)
..|||++||||||++++..|.|+++ +.||.|.+.|++.|.|+|. ++.|.|.|||+||++||+.||..|..
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~ 75 (89)
T 1uhz_A 5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATGTGPNKKIAKKNAAEAMLLQLGY 75 (89)
T ss_dssp SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHhc
Confidence 5799999999999999999999987 7899999999999999996 89999999999999999999999964
No 22
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=99.74 E-value=2.6e-18 Score=140.06 Aligned_cols=69 Identities=25% Similarity=0.510 Sum_probs=64.2
Q ss_pred ChHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEECCEEEeecccc-cCcchHHHHHHHHHHHhcCC
Q 038761 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSC-KSSKESQNDAAKLAFLHFTS 70 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~gg~g-~SKK~Aeq~AA~~AL~~L~~ 70 (365)
+||+.||||||++++.+|.|++..+||+|++.|+|.|+|+|..++.| .| +|||+|||+||+.||..|..
T Consensus 18 d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G-~G~~SKK~Aeq~AA~~AL~~L~~ 87 (103)
T 2l2n_A 18 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSL-PGFFNRKAAEQSAAEVALRELAK 87 (103)
T ss_dssp -CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECC-SCBSSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEe-ecCCCHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999995569999999999999999999886 99 99999999999999999865
No 23
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.74 E-value=1.2e-17 Score=131.29 Aligned_cols=71 Identities=31% Similarity=0.389 Sum_probs=66.2
Q ss_pred CCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761 171 DGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER 243 (365)
Q Consensus 171 ~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~ 243 (365)
...|||+.||||||+++ ..|.|+++ +.||.|.+.|++.|.|+| .++.|.|.|||+||++||+.||..|...
T Consensus 6 ~~~d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~G~SKK~Aeq~AA~~aL~~L~~~ 77 (84)
T 2dix_A 6 SGKTPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCTGEGTSKKLAKHRAAEAAINILKAN 77 (84)
T ss_dssp CCCCHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEEECSSCTTHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEEeeeCCHHHHHHHHHHHHHHHHhcc
Confidence 45799999999999998 68999987 789999999999999999 8899999999999999999999999754
No 24
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=99.74 E-value=2.8e-18 Score=131.26 Aligned_cols=67 Identities=28% Similarity=0.308 Sum_probs=61.6
Q ss_pred ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCC
Q 038761 1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSP 71 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~ 71 (365)
+||+.||||||+ +.+|.|++ .++||+|++.|++.|.|+|..+ .| .|+|||+|||+||+.||+.|...
T Consensus 5 d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G-~G~SKK~Aeq~AA~~al~~L~~~ 72 (73)
T 2b7t_A 5 LPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EG-SGPTKKKAKLHAAEKALRSFVQF 72 (73)
T ss_dssp SSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EE-EESSHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-Ee-ecCCHHHHHHHHHHHHHHHHhcC
Confidence 689999999996 67899999 7789999999999999999987 75 99999999999999999998753
No 25
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=99.73 E-value=1.1e-17 Score=136.33 Aligned_cols=76 Identities=33% Similarity=0.469 Sum_probs=67.1
Q ss_pred CCCcchhhHHHHHHHhcCCCCCeEEEEeeCCCCCCeEEEEEEECCEEEeeEec-cCHHHHHHHHHHHHHHHHHhhcc
Q 038761 170 DDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAG-RTKKKAEMKAAKVAYTALIERKL 245 (365)
Q Consensus 170 ~~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~i~g~~~~~G~G-~SKK~Ae~~AA~~aL~~L~~~~~ 245 (365)
....|||+.||||||++++.+|.|+++++||.|.+.|++.|.|+|..++.|.| .|||+||++||+.||..|...+.
T Consensus 14 ~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~AL~~L~~~~~ 90 (103)
T 2l2n_A 14 SNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELAKSSE 90 (103)
T ss_dssp -----CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEeecCCCHHHHHHHHHHHHHHHHhcccc
Confidence 45689999999999999999999999977999999999999999999999999 99999999999999999986543
No 26
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=99.73 E-value=6.1e-18 Score=134.61 Aligned_cols=68 Identities=24% Similarity=0.302 Sum_probs=56.6
Q ss_pred ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCC
Q 038761 1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSP 71 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~ 71 (365)
+||+.||||||+++. .|.|++ .++||+|++.|+|.|+|+|. ++.| .|+|||+|||.||+.||+.|...
T Consensus 15 d~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G-~G~SKK~Aeq~AA~~aL~~L~~~ 83 (90)
T 3llh_A 15 TPISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTG-QGPSKKAAKHKAAEVALKHLKGG 83 (90)
T ss_dssp CHHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCE-EEEE-EeCCHHHHHHHHHHHHHHHHHhc
Confidence 689999999999985 799998 78999999999999999998 5676 99999999999999999999764
No 27
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=99.73 E-value=4.2e-18 Score=134.12 Aligned_cols=70 Identities=29% Similarity=0.295 Sum_probs=65.0
Q ss_pred cchhhHHHHHHHh-----cCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHh
Q 038761 173 VFYKNVLHELSLR-----EGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE 242 (365)
Q Consensus 173 ~n~ks~LqE~~qk-----~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~ 242 (365)
.|||+.||||||+ +++..|.|+++ +.||+|.+.|++.|.|+|..++.|.|.|||+||++||+.||..|..
T Consensus 1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~G~SKK~AEq~AA~~AL~~L~~ 76 (85)
T 2khx_A 1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNF 76 (85)
T ss_dssp CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhH
Confidence 4899999999998 46789999987 7899999999999999999999999999999999999999998854
No 28
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.72 E-value=3.6e-18 Score=137.77 Aligned_cols=70 Identities=26% Similarity=0.361 Sum_probs=64.7
Q ss_pred ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCCC
Q 038761 1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPP 72 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~~ 72 (365)
+||+.||||||++++. |.|++ .+.||+|.+.|+|.|+|+|..++.| .|+|||+|||.||+.||+.|....
T Consensus 15 n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~~~ 85 (97)
T 1x49_A 15 FYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEA-KGRSKQEARNAAAKLAVDILDNEN 85 (97)
T ss_dssp HHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCE-EESSHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEE-eeCCHHHHHHHHHHHHHHHHHhhc
Confidence 4899999999999997 79998 6789999999999999999998886 999999999999999999998643
No 29
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.72 E-value=1.2e-17 Score=134.67 Aligned_cols=72 Identities=29% Similarity=0.408 Sum_probs=67.6
Q ss_pred CCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761 171 DGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER 243 (365)
Q Consensus 171 ~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~ 243 (365)
...|||++||||||++++. |.|+++ +.||.|.+.|++.|.|+|..++.|.|.|||+|||+||+.||..|...
T Consensus 12 ~~~n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 84 (97)
T 1x49_A 12 TPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNE 84 (97)
T ss_dssp CTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHhh
Confidence 5689999999999999997 799976 78999999999999999998999999999999999999999999754
No 30
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=99.72 E-value=3.1e-18 Score=138.60 Aligned_cols=68 Identities=19% Similarity=0.230 Sum_probs=63.5
Q ss_pred ChHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEECC-EEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNG-LSFHSSVSCKSSKESQNDAAKLAFLHFTS 70 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g-~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~ 70 (365)
+||+.||||||++ +.+|.|++.+.||+|.+.|+|.|+|+| ..++.| .|+|||+|||+||+.||+.|..
T Consensus 7 d~Kt~LqE~~Qk~-~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~ 75 (99)
T 1whq_A 7 GIKNFLYAWCGKR-KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMG-NSTNKKDAQSNAARDFVNYLVR 75 (99)
T ss_dssp SSHHHHHHHHHHT-TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEE-EESSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHC-CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEe-ccCCHHHHHHHHHHHHHHHHHh
Confidence 6899999999999 889999997789999999999999999 688886 9999999999999999999864
No 31
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.72 E-value=5.6e-18 Score=134.28 Aligned_cols=69 Identities=22% Similarity=0.329 Sum_probs=64.1
Q ss_pred ChHHHHHHHHHhcCCCCCeEEeeecCCCCCC-cEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCCC
Q 038761 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDP-RFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPP 72 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~-~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~~ 72 (365)
+||+.||||||++++.+ .|+ .+.||+|.+ .|+|.|+|+|..++.| .|+|||+|||+||+.||+.|...+
T Consensus 7 d~Kt~LqE~~Q~~~~~~-~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~~~ 76 (88)
T 1x48_A 7 GYIGLVNSFAQKKKLSV-NYE-QCEPNSELPQRFICKCKIGQTMYGTG-SGVTKQEAKQLAAKEAYQKLLKSP 76 (88)
T ss_dssp CHHHHHHHHHHHTTCCE-EEE-ECCCSSSSSCCEEEEEEESSCEEEEE-EESSHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHcCCCC-eeE-EeeCCCCCCceEEEEEEECCEEEEEe-ecCCHHHHHHHHHHHHHHHHHhcC
Confidence 69999999999999976 999 788999999 7999999999999886 999999999999999999997653
No 32
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=99.72 E-value=3.1e-18 Score=132.05 Aligned_cols=70 Identities=21% Similarity=0.342 Sum_probs=65.9
Q ss_pred CCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHh
Q 038761 171 DGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE 242 (365)
Q Consensus 171 ~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~ 242 (365)
...|||+.||||||++++. |.|+++ +.||.|.+.|++.|.|+| .++.|.|.|||+||+.||+.||..|..
T Consensus 5 ~~~d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G~G~sKK~Aeq~AA~~aL~~L~~ 75 (76)
T 1ekz_A 5 DKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTEGEGNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 4579999999999999999 999987 789999999999999999 889999999999999999999999864
No 33
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.71 E-value=4.4e-17 Score=129.09 Aligned_cols=74 Identities=24% Similarity=0.335 Sum_probs=67.6
Q ss_pred CCcchhhHHHHHHHhcCCCCCeEEEEeeCCCCCC-eEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhhccc
Q 038761 171 DGVFYKNVLHELSLREGLPVPLYETIKCGAPHMP-TFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLI 246 (365)
Q Consensus 171 ~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~-~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~~~~ 246 (365)
...|||++||||||++++.+ .|+ .+.||.|.+ +|++.|.|+|..++.|.|.|||+|||.||+.||..|...++.
T Consensus 4 ~~~d~Kt~LqE~~Q~~~~~~-~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~~ 78 (88)
T 1x48_A 4 GSSGYIGLVNSFAQKKKLSV-NYE-QCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPPK 78 (88)
T ss_dssp SSSCHHHHHHHHHHHTTCCE-EEE-ECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCHHHHHHHHHHHcCCCC-eeE-EeeCCCCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34699999999999999976 999 888999999 799999999999999999999999999999999999876433
No 34
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=99.71 E-value=2.5e-17 Score=125.94 Aligned_cols=69 Identities=38% Similarity=0.527 Sum_probs=63.8
Q ss_pred CcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761 172 GVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER 243 (365)
Q Consensus 172 ~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~ 243 (365)
..|||+.||||||+ +..|.|+++ +.||.|.+.|++.|.|+|..+ .|.|.|||+||++||+.||..|...
T Consensus 3 ~~d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~~ 72 (73)
T 2b7t_A 3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQF 72 (73)
T ss_dssp SSSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-EeecCCHHHHHHHHHHHHHHHHhcC
Confidence 46999999999995 789999986 789999999999999999887 9999999999999999999999753
No 35
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=99.70 E-value=2.7e-17 Score=133.05 Aligned_cols=72 Identities=24% Similarity=0.209 Sum_probs=67.4
Q ss_pred CcchhhHHHHHHHhcCCCCCeEEEEeeCCCCCCeEEEEEEECC-EEEeeEeccCHHHHHHHHHHHHHHHHHhhc
Q 038761 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDG-EVFYGKAGRTKKKAEMKAAKVAYTALIERK 244 (365)
Q Consensus 172 ~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~i~g-~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~~ 244 (365)
..|||++||||||++ +..|.|++.+.||.|.++|+|.|.|+| ..++.|.|.|||+|||+||+.||..|....
T Consensus 5 ~~d~Kt~LqE~~Qk~-~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~ 77 (99)
T 1whq_A 5 SSGIKNFLYAWCGKR-KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRIN 77 (99)
T ss_dssp CCSSHHHHHHHHHHT-TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHC-CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHHhhC
Confidence 369999999999999 889999998889999999999999999 688999999999999999999999998753
No 36
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=99.70 E-value=6.8e-18 Score=134.70 Aligned_cols=66 Identities=18% Similarity=0.059 Sum_probs=60.4
Q ss_pred ChHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEECCE-EEeecccccCcchHHHHHHHHHHHhc
Q 038761 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGL-SFHSSVSCKSSKESQNDAAKLAFLHF 68 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~-~~~~gg~g~SKK~Aeq~AA~~AL~~L 68 (365)
+|||.||||||+++ .+|.|++...||+|++.|++.|.|+|. .++.| .|+|||+|||+||+.||..|
T Consensus 7 D~KT~LQE~~Q~~~-~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G-~G~SKK~AEQ~AA~~AL~~l 73 (94)
T 1t4n_A 7 NAKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTG-VGRNIKIAGIRAAENALRDK 73 (94)
T ss_dssp HHHHHHHHHTCSSS-SCCEEEECCCCSSSCCSEEEEEECSSSCEEEEE-EESSHHHHHHHHHHHHHHCH
T ss_pred CchHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEE-EeCCHHHHHHHHHHHHHHHH
Confidence 58999999999974 689999955699999999999999998 88886 99999999999999999865
No 37
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=99.70 E-value=5.9e-17 Score=134.12 Aligned_cols=80 Identities=20% Similarity=0.204 Sum_probs=70.5
Q ss_pred CcchhhHHHHHHHhcCCCCCeEEEEeeCCCCCCeEEEEEEE-----CCEEEeeEeccCHHHHHHHHHHHHHHHHHhhccc
Q 038761 172 GVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEV-----DGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLI 246 (365)
Q Consensus 172 ~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~i-----~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~~~~ 246 (365)
..|||++||||||++++ .|.|++.+.||.|.+.|++.|.| +|..++.|.|.|||+|||.||+.||..|... .
T Consensus 25 ~~d~Kt~LqE~~Qk~~~-~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~~~--~ 101 (113)
T 1uil_A 25 LENAKARLNQYFQKEKI-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHL--G 101 (113)
T ss_dssp HHHHHHHHHHHHHHSCC-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHH--T
T ss_pred cCCHHHHHHHHHHHCCC-CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHHhc--C
Confidence 36999999999999999 99999778999999999999999 6888999999999999999999999999865 3
Q ss_pred CCCCCCCC
Q 038761 247 FSLPFHGG 254 (365)
Q Consensus 247 ~~~p~~~~ 254 (365)
...+++|.
T Consensus 102 ~ie~~~g~ 109 (113)
T 1uil_A 102 VIEAYSSG 109 (113)
T ss_dssp SSCCCCCS
T ss_pred CcccccCC
Confidence 44455444
No 38
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=99.70 E-value=5e-17 Score=129.33 Aligned_cols=72 Identities=32% Similarity=0.403 Sum_probs=59.0
Q ss_pred CCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761 170 DDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER 243 (365)
Q Consensus 170 ~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~ 243 (365)
....|||+.||||||+++. .|.|+++ +.||.|.+.|++.|.|+|. ++.|.|.|||+||+.||+.||..|...
T Consensus 11 ~~~kd~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~aL~~L~~~ 83 (90)
T 3llh_A 11 NPGKTPISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTGQGPSKKAAKHKAAEVALKHLKGG 83 (90)
T ss_dssp --CCCHHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC--
T ss_pred ccCCCHHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCE-EEEEEeCCHHHHHHHHHHHHHHHHHhc
Confidence 3568999999999999875 7999986 8899999999999999997 689999999999999999999999764
No 39
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=99.70 E-value=2e-17 Score=137.01 Aligned_cols=68 Identities=13% Similarity=0.208 Sum_probs=62.9
Q ss_pred ChHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEE-----CCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSV-----NGLSFHSSVSCKSSKESQNDAAKLAFLHFTS 70 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v-----~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~ 70 (365)
+||+.||||||++++ +|.|++.+.||+|.+.|+|.|+| +|..++.| .|+|||+|||+||+.||+.|..
T Consensus 27 d~Kt~LqE~~Qk~~~-~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G-~G~SKK~AEq~AA~~AL~~L~~ 99 (113)
T 1uil_A 27 NAKARLNQYFQKEKI-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFARE-HGSNKKLAAQSCALSLVRQLYH 99 (113)
T ss_dssp HHHHHHHHHHHHSCC-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEEC-CCSSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCC-CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEE-eeCCHHHHHHHHHHHHHHHHHh
Confidence 489999999999999 99999878899999999999999 68888886 9999999999999999998754
No 40
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.69 E-value=3.8e-17 Score=131.78 Aligned_cols=67 Identities=22% Similarity=0.295 Sum_probs=61.9
Q ss_pred ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCC
Q 038761 1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSP 71 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~ 71 (365)
+||+.||||||++ .+|.|++ .+.||+|++.|++.|+|+|..+ .| .|+|||+|||+||+.||..|..+
T Consensus 17 d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G-~G~SKK~Aeq~AA~~aL~~L~~~ 84 (97)
T 2dmy_A 17 DLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EA-SGPSKKTAKLHVAVKVLQAMGYP 84 (97)
T ss_dssp SCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EE-EESSHHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EE-eeCCHHHHHHHHHHHHHHHhCCC
Confidence 6899999999996 6899999 6689999999999999999998 75 99999999999999999999763
No 41
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.69 E-value=1.3e-16 Score=128.92 Aligned_cols=75 Identities=25% Similarity=0.242 Sum_probs=68.1
Q ss_pred CCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhhcccC
Q 038761 171 DGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIERKLIF 247 (365)
Q Consensus 171 ~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~~~~~ 247 (365)
...|||+.||||||++++..|.|+++ +.||. +.|++.|.|+|..++.|.|.|||+|||+||+.||..|.....+.
T Consensus 14 ~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~~~ 89 (98)
T 1x47_A 14 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPDFVKQ 89 (98)
T ss_dssp TCCCHHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCSSSSCC
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhhhhhh
Confidence 56899999999999999999999987 67876 99999999999999999999999999999999999997654433
No 42
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.69 E-value=5.5e-17 Score=131.07 Aligned_cols=67 Identities=19% Similarity=0.261 Sum_probs=62.9
Q ss_pred ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761 1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS 70 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~ 70 (365)
+||+.||||||++++.+|.|++ .+.||+ +.|+|.|+|+|..++.| .|+|||+|||+||+.||..|..
T Consensus 17 d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~ 84 (98)
T 1x47_A 17 SEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSG-TASSKKLAKNKAARATLEILIP 84 (98)
T ss_dssp CHHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEEEEEE-EESSHHHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999 668987 99999999999999886 9999999999999999999975
No 43
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=99.68 E-value=4.3e-17 Score=129.77 Aligned_cols=67 Identities=28% Similarity=0.352 Sum_probs=62.0
Q ss_pred ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCC
Q 038761 1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSP 71 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~ 71 (365)
++|+.||||||+++ .|.|++ .++||+|++.|+|.|.|+|..+ .| .|+|||+|||+||+.||..|...
T Consensus 15 ~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G-~G~SKK~AEq~AA~~AL~~L~~~ 82 (91)
T 2l33_A 15 HGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-QG-AGSNKKVAKAYAALAALEKLFPD 82 (91)
T ss_dssp STTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-EE-EESSHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-Ee-eeCCHHHHHHHHHHHHHHHHhhc
Confidence 57999999999998 789998 6789999999999999999987 65 99999999999999999999764
No 44
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=99.68 E-value=2.8e-17 Score=131.10 Aligned_cols=72 Identities=24% Similarity=0.057 Sum_probs=65.8
Q ss_pred CCcchhhHHHHHHHhcCCCCCeEEEEeeCCCCCCeEEEEEEECCE-EEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761 171 DGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGE-VFYGKAGRTKKKAEMKAAKVAYTALIER 243 (365)
Q Consensus 171 ~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~i~g~-~~~~G~G~SKK~Ae~~AA~~aL~~L~~~ 243 (365)
...|||+.||||+|++ ...|.|++++.||.|.+.|++.|.|+|. .++.|.|.|||+|||.||+.||..|.-.
T Consensus 4 ~~~D~KT~LQE~~Q~~-~~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~l 76 (94)
T 1t4n_A 4 LDMNAKRQLYSLIGYA-SLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKML 76 (94)
T ss_dssp SCHHHHHHHHHHTCSS-SSCCEEEECCCCSSSCCSEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHCHHHH
T ss_pred CCCCchHHHHHHHcCC-CCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999997 4689999987799999999999999998 8999999999999999999999988643
No 45
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=99.67 E-value=4.1e-17 Score=134.66 Aligned_cols=66 Identities=18% Similarity=0.059 Sum_probs=60.1
Q ss_pred ChHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEECCE-EEeecccccCcchHHHHHHHHHHHhc
Q 038761 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGL-SFHSSVSCKSSKESQNDAAKLAFLHF 68 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~-~~~~gg~g~SKK~Aeq~AA~~AL~~L 68 (365)
+|||.||||||+.+ .+|.|++...||+|++.|++.|+|+|. .++.| .|+|||+|||+||+.||..+
T Consensus 9 D~KT~LQE~~Q~~~-~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G-~G~SKK~AEQ~AA~~AL~~l 75 (117)
T 1t4o_A 9 NAKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTG-VGRNIKIAGIRAAENALRDK 75 (117)
T ss_dssp THHHHHHHHHCCGG-GCCEEEEEECCCSSCCCEEEEEECTTCCEEEEE-EESSHHHHHHHHHHHHHHCH
T ss_pred CchHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEE-EeCCHHHHHHHHHHHHHHHH
Confidence 69999999999954 789999944599999999999999999 88886 99999999999999999864
No 46
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.66 E-value=3.2e-16 Score=126.35 Aligned_cols=70 Identities=27% Similarity=0.404 Sum_probs=65.1
Q ss_pred CCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHh
Q 038761 170 DDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE 242 (365)
Q Consensus 170 ~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~ 242 (365)
....|||+.||||||++ ..|.|+++ +.||.|.+.|++.|.|+|..+ .|.|.|||+||++||+.||..|..
T Consensus 13 ~~~~d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~aL~~L~~ 83 (97)
T 2dmy_A 13 SKAIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGY 83 (97)
T ss_dssp CCSSSCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHhCC
Confidence 45689999999999996 78999987 689999999999999999988 999999999999999999999964
No 47
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=99.65 E-value=3.7e-16 Score=124.37 Aligned_cols=70 Identities=36% Similarity=0.365 Sum_probs=64.5
Q ss_pred CCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761 171 DGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER 243 (365)
Q Consensus 171 ~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~ 243 (365)
...++|+.||||||+++ .|.|+++ +.||.|.++|++.|.|+|..+ .|.|.|||+|||+||+.||..|...
T Consensus 12 ~~~~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~ 82 (91)
T 2l33_A 12 LTKHGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPD 82 (91)
T ss_dssp CCSSTTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCC
T ss_pred hccCCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHhhc
Confidence 35689999999999998 8899987 789999999999999999887 9999999999999999999999754
No 48
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.65 E-value=2e-16 Score=133.51 Aligned_cols=68 Identities=26% Similarity=0.332 Sum_probs=63.2
Q ss_pred ChHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEECCEEEeecccc-cCcchHHHHHHHHHHHhcCCC
Q 038761 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSC-KSSKESQNDAAKLAFLHFTSP 71 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~gg~g-~SKK~Aeq~AA~~AL~~L~~~ 71 (365)
+||+.||||||++++.+|.|++... +|.+.|+|.|+|+|..++.| .| +|||+|||+||+.||..|...
T Consensus 27 d~Kt~LQE~~Qk~~~~~P~Y~~v~~--~H~~~F~v~V~v~g~~~g~G-~G~~SKK~AEQ~AA~~AL~~L~~~ 95 (128)
T 1whn_A 27 TPKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQST-LWDKSKKLAEQTAAIVCLRSQGLP 95 (128)
T ss_dssp CHHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEES-SCBSSHHHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHcCCCCCeEEEEee--cCCCcEEEEEEECCEEEEEE-eccCCHHHHHHHHHHHHHHHHhcc
Confidence 6899999999999999999999554 89999999999999999886 99 999999999999999999753
No 49
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=99.65 E-value=2e-16 Score=130.53 Aligned_cols=72 Identities=24% Similarity=0.057 Sum_probs=66.0
Q ss_pred CCcchhhHHHHHHHhcCCCCCeEEEEeeCCCCCCeEEEEEEECCE-EEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761 171 DGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGE-VFYGKAGRTKKKAEMKAAKVAYTALIER 243 (365)
Q Consensus 171 ~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~i~g~-~~~~G~G~SKK~Ae~~AA~~aL~~L~~~ 243 (365)
...|||+.||||||.. ...|.|++++.||.|.+.|++.|.|+|. .++.|.|.|||+|||.||+.||..|.-.
T Consensus 6 ~~~D~KT~LQE~~Q~~-~~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~l 78 (117)
T 1t4o_A 6 LDMNAKRQLYSLIGYA-SLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKML 78 (117)
T ss_dssp CCTTHHHHHHHHHCCG-GGCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHHHH
T ss_pred CCCCchHHHHHHHcCC-CCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999994 4789999986699999999999999998 8999999999999999999999988654
No 50
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=99.64 E-value=2.9e-16 Score=129.88 Aligned_cols=65 Identities=28% Similarity=0.324 Sum_probs=60.2
Q ss_pred ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCCC
Q 038761 1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPP 72 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~~ 72 (365)
+||+.||||||+ |.|++ .++||+|++.|+++|+|+|..+ .| .|+|||+|||+||+.||+.|...+
T Consensus 38 d~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G-~G~SKK~AEq~AA~~AL~~L~~~~ 103 (114)
T 2ljh_A 38 NTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-LG-QGRSKKVARIEAAATALRSFIQFK 103 (114)
T ss_dssp CHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-EE-EESSHHHHHHHHHHHHHHHHCCCT
T ss_pred CHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-Ee-eeCCHHHHHHHHHHHHHHHHHcCC
Confidence 689999999985 89999 7789999999999999999999 75 999999999999999999998754
No 51
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=99.62 E-value=1.3e-15 Score=125.89 Aligned_cols=69 Identities=32% Similarity=0.403 Sum_probs=63.3
Q ss_pred cCCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761 169 WDDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER 243 (365)
Q Consensus 169 ~~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~ 243 (365)
.....|||++||||||+ |.|+++ +.||.|.++|++.|.|+|..+ .|.|.|||+|||+||+.||+.|...
T Consensus 33 ~~~~kd~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~ 102 (114)
T 2ljh_A 33 IPQPKNTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALRSFIQF 102 (114)
T ss_dssp CCCCSCHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHHcC
Confidence 34568999999999984 899986 789999999999999999999 9999999999999999999999764
No 52
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.62 E-value=9.4e-16 Score=129.41 Aligned_cols=70 Identities=31% Similarity=0.300 Sum_probs=66.1
Q ss_pred CCcchhhHHHHHHHhcCCCCCeEEEEeeCCCCCCeEEEEEEECCEEEeeEec-cCHHHHHHHHHHHHHHHHHh
Q 038761 171 DGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAG-RTKKKAEMKAAKVAYTALIE 242 (365)
Q Consensus 171 ~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~i~g~~~~~G~G-~SKK~Ae~~AA~~aL~~L~~ 242 (365)
...|||+.||||||++++.+|.|+++.. .|.+.|++.|.|+|..++.|.| .|||+|||+||+.||..|..
T Consensus 24 ~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~--~H~~~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~AL~~L~~ 94 (128)
T 1whn_A 24 PQITPKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGL 94 (128)
T ss_dssp TTCCHHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHcCCCCCeEEEEee--cCCCcEEEEEEECCEEEEEEeccCCHHHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999999866 8999999999999999999999 99999999999999999964
No 53
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=99.59 E-value=5e-15 Score=112.46 Aligned_cols=67 Identities=33% Similarity=0.499 Sum_probs=61.0
Q ss_pred CCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761 171 DGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER 243 (365)
Q Consensus 171 ~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~ 243 (365)
...|+++.||||| ..|.|+++ +.||.|.+.|++.|.|+|..+ .|.|.|||+|||.||+.||..|...
T Consensus 2 ~~knp~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~SKK~Aeq~AA~~al~~L~~~ 69 (71)
T 2b7v_A 2 SGKNPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFNL 69 (71)
T ss_dssp CSSCHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCEE-EEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHHHhc
Confidence 3579999999994 68999986 789999999999999999876 9999999999999999999999764
No 54
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=99.56 E-value=4.8e-15 Score=112.58 Aligned_cols=62 Identities=26% Similarity=0.261 Sum_probs=56.5
Q ss_pred ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcC
Q 038761 1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFT 69 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~ 69 (365)
+||+.||||| .+|.|++ .++||+|++.|+|.|.|+|..+ .| .|+|||+|||+||+.||..|.
T Consensus 5 np~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G-~G~SKK~Aeq~AA~~al~~L~ 67 (71)
T 2b7v_A 5 NPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFF-EG-SGRNKKLAKARAAQSALATVF 67 (71)
T ss_dssp CHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCEE-EE-EESSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEEE-EE-eeCCHHHHHHHHHHHHHHHHH
Confidence 5899999994 6799998 7789999999999999999976 65 999999999999999999874
No 55
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.56 E-value=3.4e-14 Score=130.56 Aligned_cols=136 Identities=20% Similarity=0.161 Sum_probs=103.5
Q ss_pred cCcHHHHHHHHHHcCCCCCceeeeccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccCChhh--hH
Q 038761 81 CRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQE--AI 158 (365)
Q Consensus 81 ~~~~s~L~E~~qk~~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g~~~--~~ 158 (365)
......|.++|.+.++ ..| +..|+... ..+..|..-.|..+..+| +.|+.. +.
T Consensus 74 lV~~~~la~~a~~l~l--~~~--l~~~~~~~--------------------~~~~lad~~EAliGAiyl-d~g~~~~~~~ 128 (221)
T 2nug_A 74 LISEEFFNLLAQKLEL--HKF--IRIKRGKI--------------------NETIIGDVFEALWAAVYI-DSGRDANFTR 128 (221)
T ss_dssp HTSHHHHHHHHHTTTG--GGT--CBSCTTCC--------------------CHHHHHHHHHHHHHHHHH-HTTSCHHHHH
T ss_pred HHCHHHHHHHHHHcCh--HHh--hccCCCcc--------------------cchHHHHHHHHHHHHHHH-hCCCCHHHHH
Confidence 4456778888888775 223 22333211 167788888899999999 567665 52
Q ss_pred -HHh----hhhc-c-cccCCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHH
Q 038761 159 -FLY----AHVS-M-YLWDDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEM 230 (365)
Q Consensus 159 -~~~----~~l~-~-~~~~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~ 230 (365)
++. +.+. . .......|||+.||||||++++..|.|+++ +.||.|.+.|+|.|.|+|. ++.|.|.|||+||+
T Consensus 129 ~~i~~~~~~~~~~~~~~~~~~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G~G~skK~Ae~ 207 (221)
T 2nug_A 129 ELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKSKKEAEQ 207 (221)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHH
T ss_pred HHHHHHHHHHHhhhhhccccccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEEecCCHHHHHH
Confidence 222 2222 1 112335799999999999999999999987 7899999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHh
Q 038761 231 KAAKVAYTALIE 242 (365)
Q Consensus 231 ~AA~~aL~~L~~ 242 (365)
.||+.||..|..
T Consensus 208 ~AA~~AL~~L~~ 219 (221)
T 2nug_A 208 RAAEELIKLLEE 219 (221)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHhhc
Confidence 999999999963
No 56
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.55 E-value=1.9e-14 Score=134.86 Aligned_cols=144 Identities=23% Similarity=0.235 Sum_probs=106.6
Q ss_pred cCcHHHHHHHHHHcCCCCCceeeeccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccCChhhhH-H
Q 038761 81 CRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAI-F 159 (365)
Q Consensus 81 ~~~~s~L~E~~qk~~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g~~~~~-~ 159 (365)
.+....|.++|.+.++ ..|-....|.. ..++..+.+..|....|..+..+| +.|++.+. +
T Consensus 100 lV~~~~la~~a~~lgL--~~~l~~~~~e~----------------~~~~~~~~~~lad~~EAliGAiyl-d~g~~~~~~~ 160 (252)
T 1o0w_A 100 AASEEVLAMVSRKMNL--GKFLFLGKGEE----------------KTGGRDRDSILADAFEALLAAIYL-DQGYEKIKEL 160 (252)
T ss_dssp HTSHHHHHHHHHHTTH--HHHCBCCHHHH----------------HTTGGGCHHHHHHHHHHHHHHHHH-HHCHHHHHHH
T ss_pred HhCHHHHHHHHHHcCc--HHhhccCchhh----------------hcCCCCCccHHHhHHHHHHHHHHH-cCCHHHHHHH
Confidence 3456778888888775 23322211110 012345678889999999999999 55766552 2
Q ss_pred Hh----hhhccc-ccCCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHH
Q 038761 160 LY----AHVSMY-LWDDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233 (365)
Q Consensus 160 ~~----~~l~~~-~~~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA 233 (365)
+. +.+... ......|||+.||||||++++..|.|+++ +.||.|.+.|+|.|.|+|..++.|.|.|||+||+.||
T Consensus 161 i~~~~~~~~~~~~~~~~~~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA 240 (252)
T 1o0w_A 161 FEQEFEFYIEKIMKGEMLFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAA 240 (252)
T ss_dssp HHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccccCHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEEeeCCHHHHHHHHH
Confidence 22 222211 12245799999999999999999999987 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 038761 234 KVAYTALIER 243 (365)
Q Consensus 234 ~~aL~~L~~~ 243 (365)
+.||..|...
T Consensus 241 ~~AL~~L~~~ 250 (252)
T 1o0w_A 241 RIAYEKLLKE 250 (252)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHhhc
Confidence 9999999653
No 57
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=99.53 E-value=1.2e-14 Score=111.71 Aligned_cols=66 Identities=27% Similarity=0.339 Sum_probs=59.0
Q ss_pred hHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCC
Q 038761 2 YKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSP 71 (365)
Q Consensus 2 ~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~ 71 (365)
.|+-|+||+|.+ ..|.|++ .++||+|++.|++.|.|+|..+ .| .|+|||+|||+||+.||..|...
T Consensus 6 ~K~pl~~L~q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G-~G~SKK~Aeq~AA~~al~~L~~~ 72 (75)
T 3p1x_A 6 GKNPVMELNEKR--RGLKYELISETGGSHDKRFVMEVEVDGQKF-QG-AGSNKKVAKAYAALAALEKLFPD 72 (75)
T ss_dssp CCCHHHHHHHHS--TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EE-EESSHHHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHcC--CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EE-EECCHHHHHHHHHHHHHHHHHcc
Confidence 366788888886 4789999 6799999999999999999988 75 99999999999999999999764
No 58
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=99.52 E-value=4.6e-14 Score=108.37 Aligned_cols=66 Identities=38% Similarity=0.422 Sum_probs=56.7
Q ss_pred hhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761 175 YKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIER 243 (365)
Q Consensus 175 ~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~ 243 (365)
.|+.|++|+|.. ..|.|++. ++||.|.+.|++.|.|+|..+ .|.|.|||+|||+||+.||+.|...
T Consensus 6 ~K~pl~~L~q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~~ 72 (75)
T 3p1x_A 6 GKNPVMELNEKR--RGLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPD 72 (75)
T ss_dssp CCCHHHHHHHHS--TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHcC--CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EEEECCHHHHHHHHHHHHHHHHHcc
Confidence 344555555554 58899987 799999999999999999988 9999999999999999999999764
No 59
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.51 E-value=1.6e-14 Score=132.86 Aligned_cols=68 Identities=24% Similarity=0.315 Sum_probs=63.7
Q ss_pred ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761 1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS 70 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~ 70 (365)
+||+.||||||++++.+|.|++ .+.||+|.+.|+|.|+|+|. ++.| .|.|||+||+.||+.||..|..
T Consensus 151 ~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G-~G~skK~Ae~~AA~~AL~~L~~ 219 (221)
T 2nug_A 151 DYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLG-EGKSKKEAEQRAAEELIKLLEE 219 (221)
T ss_dssp CHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEE-ecCCHHHHHHHHHHHHHHHhhc
Confidence 5899999999999999999998 67899999999999999999 8886 9999999999999999999864
No 60
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.49 E-value=3.2e-14 Score=133.34 Aligned_cols=69 Identities=28% Similarity=0.433 Sum_probs=64.6
Q ss_pred ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761 1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS 70 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~ 70 (365)
+||+.||||||++++..|.|++ .+.||+|.+.|+|.|+|+|..++.| .|.|||+|||.||+.||..|..
T Consensus 180 dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~ 249 (252)
T 1o0w_A 180 DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATG-KGRTKKEAEKEAARIAYEKLLK 249 (252)
T ss_dssp CHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEE-EESSHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEE-eeCCHHHHHHHHHHHHHHHHhh
Confidence 5899999999999999999999 6789999999999999999999886 9999999999999999999875
No 61
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=99.47 E-value=8.4e-15 Score=137.11 Aligned_cols=143 Identities=21% Similarity=0.148 Sum_probs=39.2
Q ss_pred cCcHHHHHHHHHHcCCCCCceeeeccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccCChhhh-HH
Q 038761 81 CRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEA-IF 159 (365)
Q Consensus 81 ~~~~s~L~E~~qk~~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g~~~~-~~ 159 (365)
......|.+++.+.++ ..|-.. |+... ..++..+.|-.|.--.|..+..+| +.|++.+ .+
T Consensus 98 lVs~~~La~~a~~lgL--~~~l~~--~~~e~--------------~~~g~~~~~~lad~fEAliGAiyl-d~G~~~~~~~ 158 (248)
T 3n3w_A 98 LVNEKSFAKIANSLNL--GDFILM--SVAEE--------------NNGGKEKPSILSDALEAIIGAIHL-EAGFEFAKTI 158 (248)
T ss_dssp HHSHHHHHHHHHHTTG--GGTCBC--CHHHH--------------HTTGGGCHHHHHHHHHHHHHHHHH-HHCHHHHHHH
T ss_pred HHCHHHHHHHHHHcCc--HHHhhc--Cchhh--------------hcCCCCCccHHHHHHHHHHHHHHH-HCChHHHHHH
Confidence 3456778888888875 333332 22100 012345677889999999999999 5677665 33
Q ss_pred Hh----hhhccc-ccCCCcchhhHHHHHHHhcCCCCCeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHHH
Q 038761 160 LY----AHVSMY-LWDDGVFYKNVLHELSLREGLPVPLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKAA 233 (365)
Q Consensus 160 ~~----~~l~~~-~~~~~~n~ks~LqE~~qk~~~~~P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA 233 (365)
+. +.+... ......|||+.||||||++++..|.|+++ +.||.|.+.|++.|.|+|..++.|.|.|||+||+.||
T Consensus 159 i~~~~~~~l~~~~~~~~~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA 238 (248)
T 3n3w_A 159 ALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAA 238 (248)
T ss_dssp HHHHHHHHCC----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhccccccCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHH
Confidence 32 222211 12346899999999999999999999987 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 038761 234 KVAYTALIE 242 (365)
Q Consensus 234 ~~aL~~L~~ 242 (365)
+.||+.|+.
T Consensus 239 ~~AL~~L~~ 247 (248)
T 3n3w_A 239 KIALEKLGA 247 (248)
T ss_dssp ---------
T ss_pred HHHHHHHHc
Confidence 999999864
No 62
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=99.42 E-value=3.8e-14 Score=132.01 Aligned_cols=143 Identities=26% Similarity=0.276 Sum_probs=37.8
Q ss_pred CcHHHHHHHHHHc---CCCCCceeeeccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhccCChhhhH
Q 038761 82 RYKSVLQNYARRK---NLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLACDDFQEAI 158 (365)
Q Consensus 82 ~~~s~L~E~~qk~---~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g~~~~~ 158 (365)
.....|.++|.+. ++ ..|-....|... .++..+.|-.|.-..|..+..+| +.|++.+.
T Consensus 81 V~~~~la~~a~~l~~~gL--~~~l~~~~~e~~----------------~~~~~~~~~lad~~EAliGAiyl-d~g~~~~~ 141 (242)
T 2a11_A 81 VNTQALADVARRLCAEGL--GVHVLLGRGEAN----------------TGGADKSSILADGMESLLGAIYL-QHGMEKAR 141 (242)
T ss_dssp HSHHHHHHHHHHHSSSCS--GGGCBCCHHHHH----------------TTGGGCHHHHHHHHHHHHHHHHH-HHCHHHHH
T ss_pred hCHHHHHHHHHHhhhhCh--HHHhhcCchhhh----------------cCCCCCccHHHHHHHHHHHHHHh-cCCHHHHH
Confidence 4466788889888 65 334332111100 12234577889999999999999 55766552
Q ss_pred -HHh----hhhccc-ccCCCcchhhHHHHHHHhcCCCCCeEEEEeeCCCCCCeEEEEEEECCEEEeeEeccCHHHHHHHH
Q 038761 159 -FLY----AHVSMY-LWDDGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAEMKA 232 (365)
Q Consensus 159 -~~~----~~l~~~-~~~~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae~~A 232 (365)
++. +.+... ......|||+.||||||++++..|.|++...||.|.+.|+|.|.++|..++.|.|.|||+||+.|
T Consensus 142 ~~i~~~~~~~~~~~~~~~~~~dpkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~skk~Ae~~A 221 (242)
T 2a11_A 142 EVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKA 221 (242)
T ss_dssp HHHHHHTHHHHHHTTC----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhccccCChHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHH
Confidence 222 222211 12235799999999999999999999998899999999999999999989999999999999999
Q ss_pred HHHHHHHHHhh
Q 038761 233 AKVAYTALIER 243 (365)
Q Consensus 233 A~~aL~~L~~~ 243 (365)
|+.||..|...
T Consensus 222 A~~AL~~L~~~ 232 (242)
T 2a11_A 222 AAAAWKALEVL 232 (242)
T ss_dssp -----------
T ss_pred HHHHHHHHhhc
Confidence 99999999754
No 63
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=99.41 E-value=1.6e-14 Score=135.12 Aligned_cols=69 Identities=33% Similarity=0.433 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHhcCCCCCeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761 1 MYKTKVQELCHQKRWSLPRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS 70 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~ 70 (365)
+||+.||||||++++.+|.|++ .+.||+|.+.|+|.|+|+|..++.| .|.|||+||+.||+.||+.|..
T Consensus 178 dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~ 247 (248)
T 3n3w_A 178 DYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARA-IAGSKKEAQQMAAKIALEKLGA 247 (248)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHHc
Confidence 5899999999999999999999 6789999999999999999999886 9999999999999999998864
No 64
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=99.37 E-value=4.4e-14 Score=131.56 Aligned_cols=70 Identities=30% Similarity=0.408 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCC
Q 038761 1 MYKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSP 71 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~ 71 (365)
+||+.||||||++++..|.|++..+||+|.+.|+|.|+|+|..++.| .|.|||+||+.||+.||+.|...
T Consensus 163 dpkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G-~G~skk~Ae~~AA~~AL~~L~~~ 232 (242)
T 2a11_A 163 DWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSG-VGRSKKEAEQKAAAAAWKALEVL 232 (242)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHhhc
Confidence 58999999999999999999995599999999999999999988886 99999999999999999999753
No 65
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=99.16 E-value=9.5e-12 Score=121.29 Aligned_cols=146 Identities=14% Similarity=0.043 Sum_probs=39.5
Q ss_pred cCcHHHHHHHHHHcCCCCCceeeeccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhcc--CChhhh-
Q 038761 81 CRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLAC--DDFQEA- 157 (365)
Q Consensus 81 ~~~~s~L~E~~qk~~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~--~g~~~~- 157 (365)
......|.+++.+.|+. .|-....|+... ..+..+.+-.|..-.|..+..+|.. .|+..+
T Consensus 167 lVs~~~La~iA~~lgL~--~~l~~~~g~~~~---------------~~~~~~~~ilaD~fEAlIGAIylD~~~~G~~~a~ 229 (341)
T 3rv0_A 167 IVNNNNLFDWSTKLNFT--KRLQGNIATPTR---------------VVKDKMSKRYADCVEAYIGALVIDRFGTEFLDIK 229 (341)
T ss_dssp HHSHHHHHHHHHHTTTT--TTTCCSSCCC-------------------CCHHHHHHHHHHHHHHHHHHHHHCSSTTHHHH
T ss_pred HhCHHHHHHHHHHcCcH--HHhhhcCChhhh---------------ccCCccccHHHHHHHHHHHHHhhcCccCCHHHHH
Confidence 44567888999998863 343322222110 0112356778899999999999954 277665
Q ss_pred HHHh----hhhcccc-----cCCCcchhhHHHHHHHhcCCCC-CeEEEE-eeCCCCCCeEEEEEEECCEEEeeEeccCHH
Q 038761 158 IFLY----AHVSMYL-----WDDGVFYKNVLHELSLREGLPV-PLYETI-KCGAPHMPTFISMVEVDGEVFYGKAGRTKK 226 (365)
Q Consensus 158 ~~~~----~~l~~~~-----~~~~~n~ks~LqE~~qk~~~~~-P~Y~~~-~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK 226 (365)
.++. +.+.... .....|||+.||||||++++.. |.|++. +.|| |++.|.|+|..++.|.|.|||
T Consensus 230 ~fi~~l~~~~l~~~~~~~~~~~~~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp-----F~v~v~i~~~~~g~G~G~SKK 304 (341)
T 3rv0_A 230 EWLEELSEKKLAKSSQMVIKEPLNKNAKNELAELLQINKLGHKLHYRKLTEMPP-----FRVEVKIGDILLDEAEGNSIR 304 (341)
T ss_dssp HHHHHHTHHHHHCGGGC---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhhhhccccccCHHHHHHHHHHHcCCCCCceEEEEeccCC-----EEEEEEECCEEEEEEEeCCHH
Confidence 3332 2222110 1345799999999999999765 599987 5564 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCC
Q 038761 227 KAEMKAAKVAYTALIERKLIFS 248 (365)
Q Consensus 227 ~Ae~~AA~~aL~~L~~~~~~~~ 248 (365)
+|||.||+.||+.|....+...
T Consensus 305 ~AEq~AA~~AL~~L~~~~k~~~ 326 (341)
T 3rv0_A 305 EAEHRAAMKVLENDELLRKYSV 326 (341)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHhhhhhhhhh
Confidence 9999999999999987644443
No 66
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=99.01 E-value=3.1e-11 Score=117.70 Aligned_cols=64 Identities=16% Similarity=0.189 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHhcCCCC-CeEEe-eecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCC
Q 038761 1 MYKTKVQELCHQKRWSL-PRYST-MKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTS 70 (365)
Q Consensus 1 ~~Ks~LqE~cqk~~~~~-P~Y~~-~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~ 70 (365)
+||+.||||||++++.. |.|++ .+.|| |++.|+|+|..++.| .|.|||+|||.||+.||+.|..
T Consensus 255 d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp-----F~v~v~i~~~~~g~G-~G~SKK~AEq~AA~~AL~~L~~ 320 (341)
T 3rv0_A 255 NAKNELAELLQINKLGHKLHYRKLTEMPP-----FRVEVKIGDILLDEA-EGNSIREAEHRAAMKVLENDEL 320 (341)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHcCCCCCceEEEEeccCC-----EEEEEEECCEEEEEE-EeCCHHHHHHHHHHHHHHHhhh
Confidence 58999999999999765 59998 55675 999999999999886 9999999999999999998875
No 67
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=98.80 E-value=1.2e-08 Score=95.80 Aligned_cols=109 Identities=14% Similarity=0.062 Sum_probs=75.5
Q ss_pred ccccHHHHHHHHHHHHHHHhccCCh--hhh-HHHhhhhcccccC-CCcchhhHHHHHHHhcCCCCCeEEEEeeCCCCCCe
Q 038761 130 FFKNLKQAEHAAAKVALFSLACDDF--QEA-IFLYAHVSMYLWD-DGVFYKNVLHELSLREGLPVPLYETIKCGAPHMPT 205 (365)
Q Consensus 130 ~g~sKK~AK~~AA~~aL~~L~~~g~--~~~-~~~~~~l~~~~~~-~~~n~ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~ 205 (365)
....|-.|....|..+..+| +.|+ ..+ .++.+.+...+.. ...++|+.|+||++.... .+.|. ..++.|.+.
T Consensus 151 ~~~~~~laD~~EAliGAiyl-D~G~~~~~~~~~i~~~~~~~i~~~~~~~~k~~l~el~~~~~~-~~~~~--~~~~~~~~~ 226 (265)
T 3c4b_A 151 IEVPKAMGDIFESLAGAIYM-DSGMSLEVVWQVYYPMMQPLIEKFSANVPRSPVRELLEMEPE-TAKFS--PAERTYDGK 226 (265)
T ss_dssp SCCCHHHHHHHHHHHHHHHH-HTTSCHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHCTT-TEEEC--CCEECTTSC
T ss_pred cccchHHHHHHHHHhhheee-ecCCCHHHHHHHHHHHHHHHHHhHhhcCCCCHHHHHHHhccC-Cceee--eccccCCCc
Confidence 45689999999999999999 6666 333 2332222111100 012455566666655432 22332 234468899
Q ss_pred EEEEEEECCEEEeeEeccCHHHHHHHHHHHHHHHHHh
Q 038761 206 FISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYTALIE 242 (365)
Q Consensus 206 F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~ 242 (365)
|++.|.|+|..++.|.|.|||+|||.||+.||+.|..
T Consensus 227 f~v~v~v~~~~~~~G~G~SkK~Aeq~AA~~AL~~l~~ 263 (265)
T 3c4b_A 227 VRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKA 263 (265)
T ss_dssp EEEEEEETTTEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecceEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 9999999998899999999999999999999999975
No 68
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=98.56 E-value=4.3e-08 Score=92.05 Aligned_cols=64 Identities=19% Similarity=0.210 Sum_probs=51.4
Q ss_pred hHHHHHHHHHhcCCCCCeEEeeecCCCCCCcEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcC
Q 038761 2 YKTKVQELCHQKRWSLPRYSTMKDGADHDPRFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFT 69 (365)
Q Consensus 2 ~Ks~LqE~cqk~~~~~P~Y~~~~~Gp~h~~~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~ 69 (365)
+|+.||||+|.... .+.|. ..++.|.+.|+|.|+|+|..++.| .|+|||+|||.||+.||+.|.
T Consensus 199 ~k~~l~el~~~~~~-~~~~~--~~~~~~~~~f~v~v~v~~~~~~~G-~G~SkK~Aeq~AA~~AL~~l~ 262 (265)
T 3c4b_A 199 PRSPVRELLEMEPE-TAKFS--PAERTYDGKVRVTVEVVGKGKFKG-VGRSYRIAKSAAARRALRSLK 262 (265)
T ss_dssp CCCHHHHHHHHCTT-TEEEC--CCEECTTSCEEEEEEETTTEEEEE-EESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhccC-Cceee--eccccCCCcEEEEEEEecceEEEE-eeCCHHHHHHHHHHHHHHHHh
Confidence 56677777776653 23343 345578999999999999988886 999999999999999999875
No 69
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=95.66 E-value=0.036 Score=44.27 Aligned_cols=69 Identities=12% Similarity=0.008 Sum_probs=49.0
Q ss_pred cchhhHHHHHHHhcC-----CCCCeEEEEeeCCCCCCeEEEEEEECC----EEEeeEeccCHHHHHHHHHHHHHHHHHhh
Q 038761 173 VFYKNVLHELSLREG-----LPVPLYETIKCGAPHMPTFISMVEVDG----EVFYGKAGRTKKKAEMKAAKVAYTALIER 243 (365)
Q Consensus 173 ~n~ks~LqE~~qk~~-----~~~P~Y~~~~~Gp~h~~~F~~~V~i~g----~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~ 243 (365)
.+.++.|+.||++.- ...|.|.+.+... ....| |+|.+=. +.+....-.||+.||+.||-.|+..|...
T Consensus 4 ~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~-~~~~~-c~v~LP~~splr~i~g~~~~sk~~AK~sAAf~Ac~~L~~~ 81 (102)
T 2kou_A 4 GSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDE-FGGTI-CRITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHNL 81 (102)
T ss_dssp SHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCG-GGCEE-EEEECCTTCSSCCEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccccCccceEEEeEeec-CCCeE-EEEECCCCCCCCeeeCCccccHHHHHHHHHHHHHHHHHHC
Confidence 467899999999853 3678999764321 13467 8888721 11212234999999999999999999875
No 70
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=95.12 E-value=0.027 Score=45.04 Aligned_cols=70 Identities=17% Similarity=0.175 Sum_probs=48.3
Q ss_pred cCcHHHHHHHHHHcCC-----CCCceeeeccCCCCCcceEEEEEEcC----eEEEeccccccHHHHHHHHHHHHHHHhcc
Q 038761 81 CRYKSVLQNYARRKNL-----DSPLYSSIREGPAHACSFKARVTIDG----HTFESLEFFKNLKQAEHAAAKVALFSLAC 151 (365)
Q Consensus 81 ~~~~s~L~E~~qk~~l-----~~P~Y~~~~~Gp~h~~~F~~~v~I~g----~~~~~~g~g~sKK~AK~~AA~~aL~~L~~ 151 (365)
.+.++.|+.||++.-- ..|.|.+...... ...| |+|.+-. +.+.+ ...++|+.||+.||.+|++.|.+
T Consensus 4 ~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~~-~~~~-c~v~LP~~splr~i~g-~~~~sk~~AK~sAAf~Ac~~L~~ 80 (102)
T 2kou_A 4 GSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDEF-GGTI-CRITLPANAPISEIES-SLLPSTEAAKKDACLKAVHELHN 80 (102)
T ss_dssp SHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCGG-GCEE-EEEECCTTCSSCCEEE-EEESSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccccCccceEEEeEeecC-CCeE-EEEECCCCCCCCeeeC-CccccHHHHHHHHHHHHHHHHHH
Confidence 4578999999998632 3577775422211 2356 8888743 22332 24589999999999999999976
Q ss_pred CC
Q 038761 152 DD 153 (365)
Q Consensus 152 ~g 153 (365)
.|
T Consensus 81 ~G 82 (102)
T 2kou_A 81 LG 82 (102)
T ss_dssp HC
T ss_pred CC
Confidence 55
No 71
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=88.41 E-value=0.49 Score=51.01 Aligned_cols=40 Identities=25% Similarity=0.355 Sum_probs=35.2
Q ss_pred cEEEEEEECCEEEeecccccCcchHHHHHHHHHHHhcCCCC
Q 038761 32 RFKSSVSVNGLSFHSSVSCKSSKESQNDAAKLAFLHFTSPP 72 (365)
Q Consensus 32 ~F~~~V~v~g~~~~~gg~g~SKK~Aeq~AA~~AL~~L~~~~ 72 (365)
.|.|.+.+-+..+-++ ..+-||.|||.||+.||++|+..+
T Consensus 58 ~~~c~~~lp~~~~~~~-~~~~kkd~eq~aa~~al~~~g~~~ 97 (950)
T 3htx_A 58 LYRCHLQLPEFSVVSN-VFKKKKDSEQSAAELALDKLGIRP 97 (950)
T ss_dssp EEEEEEECSSCEEECC-CBSCHHHHHHHHHHHHHTTTTSTT
T ss_pred eEEEEeeCCCceEecc-hhhccccHHHHHHHHHHHHhCCCc
Confidence 8999999987776564 899999999999999999998754
No 72
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.30 E-value=2.5 Score=34.01 Aligned_cols=73 Identities=16% Similarity=-0.060 Sum_probs=46.5
Q ss_pred CCcchhhHHHHHHHhcCCC--CCeEEEEeeCCCCCCeEEEEEEEC---CEEEeeEeccCHHHHHHHHHHHHHHHHHhhcc
Q 038761 171 DGVFYKNVLHELSLREGLP--VPLYETIKCGAPHMPTFISMVEVD---GEVFYGKAGRTKKKAEMKAAKVAYTALIERKL 245 (365)
Q Consensus 171 ~~~n~ks~LqE~~qk~~~~--~P~Y~~~~~Gp~h~~~F~~~V~i~---g~~~~~G~G~SKK~Ae~~AA~~aL~~L~~~~~ 245 (365)
.-..+|++|+...|+---. .-.|.+... ..+.++=.|++++. -..| +|.|+.|-+||++||-.|++.|+....
T Consensus 15 ~Fp~PKnLL~~ViqrA~~ss~~kd~l~~~~-t~g~k~K~~tl~l~WP~~mef-~a~G~rK~eAE~kAAA~AC~kLK~Lgl 92 (119)
T 2db2_A 15 EFPQPKNLLNSVIGRALGISHAKDKLVYVH-TNGPKKKKVTLHIKWPKSVEV-EGYGSKKIDAERQAAAAACQLFKGWGL 92 (119)
T ss_dssp TCSCHHHHHHHHHHHHTTHHHHHHHEEEEE-CCSSSSEEEEEEECSSSCEEE-EEEESSHHHHHHHHHHHHHHHHHHHTS
T ss_pred hCCChHHHHHHHHHHHHccCchhhheeEEe-ecCCceeEEEEEecCCCcEEE-EeeccchHHHHHHHHHHHHHHHHHcCc
Confidence 3457888888777663211 112222211 12234446777764 3343 899999999999999999999998643
No 73
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=84.92 E-value=1.2 Score=48.20 Aligned_cols=71 Identities=17% Similarity=0.079 Sum_probs=49.0
Q ss_pred CcchhhHHHHHHHhcCCCCCeEEEEee------C------CCCC-CeEEEEEEECCEEEeeEeccCHHHHHHHHHHHHHH
Q 038761 172 GVFYKNVLHELSLREGLPVPLYETIKC------G------APHM-PTFISMVEVDGEVFYGKAGRTKKKAEMKAAKVAYT 238 (365)
Q Consensus 172 ~~n~ks~LqE~~qk~~~~~P~Y~~~~~------G------p~h~-~~F~~~V~i~g~~~~~G~G~SKK~Ae~~AA~~aL~ 238 (365)
...||..+++.-. -. +.|++++. | |... ..|.|.+.+=+..+..+.-+-||.|||.||+.||+
T Consensus 16 ~~~pk~~~~q~~~---~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~lp~~~~~~~~~~~kkd~eq~aa~~al~ 91 (950)
T 3htx_A 16 TPTPKAIIHQKFG---AK-ASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFSVVSNVFKKKKDSEQSAAELALD 91 (950)
T ss_dssp CCCCHHHHHHTTG---GG-SEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSCEEECCCBSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHhC---cc-eeeeehhhhcccCCCCCccccCCCCCeeEEEEeeCCCceEecchhhccccHHHHHHHHHHH
Confidence 3467777764322 22 68988642 1 2222 37888888855455568889999999999999999
Q ss_pred HHHhhccc
Q 038761 239 ALIERKLI 246 (365)
Q Consensus 239 ~L~~~~~~ 246 (365)
+|+..+..
T Consensus 92 ~~g~~~~~ 99 (950)
T 3htx_A 92 KLGIRPQN 99 (950)
T ss_dssp TTTSTTTS
T ss_pred HhCCCccc
Confidence 99886443
No 74
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.05 E-value=1.6 Score=35.17 Aligned_cols=69 Identities=19% Similarity=0.066 Sum_probs=44.5
Q ss_pred cCcHHHHHHHHHHcCCC--CCcee-ee-ccCCCCCcceEEEEEEc---CeEEEeccccccHHHHHHHHHHHHHHHhccCC
Q 038761 81 CRYKSVLQNYARRKNLD--SPLYS-SI-REGPAHACSFKARVTID---GHTFESLEFFKNLKQAEHAAAKVALFSLACDD 153 (365)
Q Consensus 81 ~~~~s~L~E~~qk~~l~--~P~Y~-~~-~~Gp~h~~~F~~~v~I~---g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~~g 153 (365)
..|++.|+...|+---. .-.|. .. .+|.. .=.|++++. -.+|+ +.|+.|.+|++.||-.|++.|+..|
T Consensus 17 p~PKnLL~~ViqrA~~ss~~kd~l~~~~t~g~k---~K~~tl~l~WP~~mef~--a~G~rK~eAE~kAAA~AC~kLK~Lg 91 (119)
T 2db2_A 17 PQPKNLLNSVIGRALGISHAKDKLVYVHTNGPK---KKKVTLHIKWPKSVEVE--GYGSKKIDAERQAAAAACQLFKGWG 91 (119)
T ss_dssp SCHHHHHHHHHHHHTTHHHHHHHEEEEECCSSS---SEEEEEEECSSSCEEEE--EEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHccCchhhheeEEeecCCc---eeEEEEEecCCCcEEEE--eeccchHHHHHHHHHHHHHHHHHcC
Confidence 45899998876654210 01121 11 23432 236777774 34554 5899999999999999999998655
Q ss_pred h
Q 038761 154 F 154 (365)
Q Consensus 154 ~ 154 (365)
+
T Consensus 92 l 92 (119)
T 2db2_A 92 L 92 (119)
T ss_dssp S
T ss_pred c
Confidence 3
No 75
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=79.07 E-value=1.5 Score=46.66 Aligned_cols=111 Identities=10% Similarity=-0.050 Sum_probs=74.4
Q ss_pred cCcHHHHHHHHHHcCCCCCceeeeccCCCCCcceEEEEEEcCeEEEeccccccHHHHHHHHHHHHHHHhcc-CChhhhH-
Q 038761 81 CRYKSVLQNYARRKNLDSPLYSSIREGPAHACSFKARVTIDGHTFESLEFFKNLKQAEHAAAKVALFSLAC-DDFQEAI- 158 (365)
Q Consensus 81 ~~~~s~L~E~~qk~~l~~P~Y~~~~~Gp~h~~~F~~~v~I~g~~~~~~g~g~sKK~AK~~AA~~aL~~L~~-~g~~~~~- 158 (365)
.+....|.+++.+.++ +.|-....|.. .+.|-.|..-.|..+..+| + .|++.+.
T Consensus 372 lVsn~~La~~A~~lgL--~~~l~~~~~e~---------------------~~~~ilaD~~EAliGAiyl-D~~G~~~a~~ 427 (756)
T 2qvw_A 372 LVRNEALNYLVQTLGL--PQLAEFSNNLV---------------------AKSKTWADMYEEIVGSIFT-GPNGIYGCEE 427 (756)
T ss_dssp HHSHHHHHHHHHHTTC--TTTCBCCSCC-----------------------CCCCHHHHHHHHHHHHHH-STTHHHHHHH
T ss_pred HhCchHHHHHHHHcCh--HHHhccCCCCC---------------------CcccHHHhHHHHHhCcccc-cccChHHHHH
Confidence 3456778888888885 44544333321 3456678888999999999 5 7877663
Q ss_pred HHhhhhcccc-----cCCCcch-hhHHHHHHHhcCCCCCeEEEEeeCCCCCCeEEEEEEECCEEEeeEeccCHHHHH---
Q 038761 159 FLYAHVSMYL-----WDDGVFY-KNVLHELSLREGLPVPLYETIKCGAPHMPTFISMVEVDGEVFYGKAGRTKKKAE--- 229 (365)
Q Consensus 159 ~~~~~l~~~~-----~~~~~n~-ks~LqE~~qk~~~~~P~Y~~~~~Gp~h~~~F~~~V~i~g~~~~~G~G~SKK~Ae--- 229 (365)
++...+.... .....|+ |+.|||++|.+ .++.|.+.+.+.||
T Consensus 428 ~v~~~~~~~~~~~~~~~~~~Dp~Kt~LqE~~q~~-----------------------------~ia~~v~~~~~~ak~~~ 478 (756)
T 2qvw_A 428 FLAKTLMSPEHSKTVGSACPDAVTKASKRVCMGE-----------------------------AGAHEFRSLVDYACEQG 478 (756)
T ss_dssp HHHHHHBCGGGSCC---CCCHHHHHHHHHHHTSC-----------------------------CCHHHHHHHHHHTTTTT
T ss_pred HHHHHHHhhhhcccccccccCchHHHHHHHHhcc-----------------------------chhhhhhhhhhHHhhhc
Confidence 3333332211 2234688 99999999843 34567788888888
Q ss_pred ------HHHHHHHHHHHHhhc
Q 038761 230 ------MKAAKVAYTALIERK 244 (365)
Q Consensus 230 ------~~AA~~aL~~L~~~~ 244 (365)
-.||+.||++|.+.+
T Consensus 479 ~~~~~~~~aa~~aL~~l~~~~ 499 (756)
T 2qvw_A 479 ISVFCSSRVSTMFLERLRDIP 499 (756)
T ss_dssp CCCBSSSHHHHHHHHHHHHSC
T ss_pred cccchhhHHHHHHHHhhcccc
Confidence 679999999998753
No 76
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=45.55 E-value=9.2 Score=29.74 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=22.3
Q ss_pred ccceeecceEEEecCC----Cc----ccc-cCCceEEe
Q 038761 318 TSSYLLCNRVRVYTRI----PD----IAF-PKGITLMP 346 (365)
Q Consensus 318 ~~~~~~~~~~~~~~~~----~~----~~~-~~~~~~~~ 346 (365)
.++|=.-+-|+|||.- || +++ |+|.||.-
T Consensus 3 ~~~~~~L~lIrVYtk~~G~~pd~~dpviL~~~GsTv~D 40 (93)
T 2eki_A 3 SGSSGYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVED 40 (93)
T ss_dssp CCSSSSCCEEEEEECCTTSCCCSSSCEEEETTSCCHHH
T ss_pred cCChhhcCeEEEEeCCCCCCCCCCCCEEEecCCCCHHH
Confidence 4788889999999932 22 778 99999864
No 77
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=36.70 E-value=9.7 Score=28.44 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=18.9
Q ss_pred eecceEEEec-CCCcccccCCceEEec
Q 038761 322 LLCNRVRVYT-RIPDIAFPKGITLMPI 347 (365)
Q Consensus 322 ~~~~~~~~~~-~~~~~~~~~~~~~~~~ 347 (365)
|+.++|.|+. .+--+.||+|+|++-|
T Consensus 3 l~~~~i~v~tP~G~~~~lp~GaT~~D~ 29 (78)
T 3hvz_A 3 LAPEEVFVFTPKGDVISLPIGSTVIDF 29 (78)
T ss_dssp ---CEEEEECTTSCEEEEETTCBHHHH
T ss_pred CcCceEEEECCCCCEEEecCCCCHHHH
Confidence 5678899884 6767789999999865
No 78
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=35.05 E-value=20 Score=33.77 Aligned_cols=18 Identities=28% Similarity=0.728 Sum_probs=15.6
Q ss_pred CCceEEeccCCeEEEEee
Q 038761 340 KGITLMPISEDKWVAVSL 357 (365)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~ 357 (365)
++-||.|..|+.||||..
T Consensus 255 ~~PTVspL~~~~wvAV~~ 272 (304)
T 1nh8_A 255 ESPTIAPLADPDWVAIRA 272 (304)
T ss_dssp SSCEEEECSSTTEEEEEE
T ss_pred CCCeeeecCCCCeEEEEE
Confidence 467999999999999975
No 79
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum}
Probab=31.85 E-value=25 Score=32.81 Aligned_cols=18 Identities=33% Similarity=0.387 Sum_probs=15.5
Q ss_pred CCceEEec-cCCeEEEEee
Q 038761 340 KGITLMPI-SEDKWVAVSL 357 (365)
Q Consensus 340 ~~~~~~~~-~~~~~~~~~~ 357 (365)
++-||.|. +|+.||||..
T Consensus 239 ~~PTV~~l~~~~~w~aV~~ 257 (289)
T 2vd3_A 239 TGPTVSEVLSDNGVVAVHA 257 (289)
T ss_dssp SSCEEEECCSSSCEEEEEE
T ss_pred CCCceecccCCCCEEEEEE
Confidence 57799999 7888999975
No 80
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=21.23 E-value=1.2e+02 Score=23.73 Aligned_cols=39 Identities=13% Similarity=-0.001 Sum_probs=23.4
Q ss_pred cceeecceEEEec---CCCcccccCCceEEeccCCeEEEEee-cCC
Q 038761 319 SSYLLCNRVRVYT---RIPDIAFPKGITLMPISEDKWVAVSL-EFP 360 (365)
Q Consensus 319 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 360 (365)
..+-+..||.|.- ++-.|-| +--+++..+.||-|.| .-+
T Consensus 16 ~~l~VG~RV~V~~~~~~~GtVry---vG~v~~~~G~wvGVEldDep 58 (104)
T 1ixd_A 16 HGLEVGSLAEVKENPPFYGVIRW---IGQPPGLNEVLAGLELEDEC 58 (104)
T ss_dssp SCCCTTSEEEECSSSCCCEEEEE---EECCSSSCCCEEEEEESSCC
T ss_pred cccccCCEEEECcCCCcEEEEEE---ecccCCCCceEEEEEecCCC
Confidence 4566777999962 2222222 1124556799999999 444
Done!