Query 038762
Match_columns 268
No_of_seqs 146 out of 1349
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 03:01:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038762.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038762hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02218 polygalacturonase ADP 100.0 1.7E-51 3.8E-56 368.1 27.5 242 7-268 60-313 (431)
2 PLN02793 Probable polygalactur 100.0 3.3E-51 7.1E-56 367.9 28.2 239 11-267 49-297 (443)
3 PLN02155 polygalacturonase 100.0 5.1E-51 1.1E-55 361.3 25.4 237 7-267 20-265 (394)
4 PLN02188 polygalacturonase/gly 100.0 5.5E-50 1.2E-54 356.2 26.6 218 10-252 32-256 (404)
5 PLN03003 Probable polygalactur 100.0 2.7E-49 5.8E-54 353.1 27.1 237 2-267 11-258 (456)
6 PLN03010 polygalacturonase 100.0 1.4E-48 2.9E-53 346.6 27.0 229 9-268 41-307 (409)
7 COG5434 PGU1 Endopygalactoruna 100.0 1E-41 2.2E-46 308.3 23.2 249 9-268 77-366 (542)
8 PF00295 Glyco_hydro_28: Glyco 100.0 1.5E-37 3.2E-42 272.4 15.5 202 45-268 4-213 (326)
9 TIGR03808 RR_plus_rpt_1 twin-a 100.0 5.8E-29 1.3E-33 218.8 21.1 171 10-223 33-207 (455)
10 PF12708 Pectate_lyase_3: Pect 99.9 3.3E-24 7.1E-29 178.6 19.6 208 14-267 1-221 (225)
11 TIGR03805 beta_helix_1 paralle 99.8 2.5E-17 5.3E-22 143.6 18.6 168 34-250 1-179 (314)
12 PF03718 Glyco_hydro_49: Glyco 99.8 7.1E-17 1.5E-21 144.1 20.4 194 47-268 232-438 (582)
13 PLN02793 Probable polygalactur 99.7 5.3E-15 1.1E-19 133.9 21.0 163 66-268 143-327 (443)
14 PLN03003 Probable polygalactur 99.7 4.4E-15 9.5E-20 133.6 19.9 163 66-268 113-288 (456)
15 PLN02218 polygalacturonase ADP 99.7 3.6E-15 7.9E-20 134.3 19.3 164 67-268 157-342 (431)
16 PLN02155 polygalacturonase 99.7 6.6E-15 1.4E-19 131.2 17.4 137 96-268 147-296 (394)
17 PLN02188 polygalacturonase/gly 99.6 4.7E-14 1E-18 126.3 21.7 163 66-268 122-307 (404)
18 PF00295 Glyco_hydro_28: Glyco 99.6 2.2E-14 4.8E-19 126.1 17.2 161 70-268 62-242 (326)
19 PLN03010 polygalacturonase 99.6 1E-13 2.3E-18 123.9 20.6 162 66-267 139-345 (409)
20 COG5434 PGU1 Endopygalactoruna 99.4 4.4E-12 9.6E-17 116.0 14.1 144 95-268 239-395 (542)
21 PF07602 DUF1565: Protein of u 99.0 9.5E-08 2.1E-12 79.8 17.8 163 30-249 14-193 (246)
22 TIGR03805 beta_helix_1 paralle 98.9 5.1E-08 1.1E-12 85.2 15.3 113 149-266 57-173 (314)
23 PF12541 DUF3737: Protein of u 98.8 2.5E-08 5.4E-13 82.5 8.5 108 151-268 93-222 (277)
24 PF13229 Beta_helix: Right han 98.7 3E-07 6.5E-12 71.7 13.0 95 149-250 47-144 (158)
25 COG3420 NosD Nitrous oxidase a 98.7 3.8E-07 8.2E-12 77.9 13.7 162 45-247 32-196 (408)
26 TIGR03808 RR_plus_rpt_1 twin-a 98.7 7.4E-07 1.6E-11 79.8 16.0 85 149-243 108-200 (455)
27 PF13229 Beta_helix: Right han 98.7 1.6E-07 3.5E-12 73.2 9.9 112 146-266 22-137 (158)
28 PF05048 NosD: Periplasmic cop 98.7 1.6E-06 3.5E-11 72.8 16.0 106 148-263 58-165 (236)
29 PF05048 NosD: Periplasmic cop 98.7 1.1E-06 2.5E-11 73.8 14.9 109 148-266 36-144 (236)
30 PLN02480 Probable pectinestera 98.6 6.3E-06 1.4E-10 72.4 17.1 204 25-267 55-273 (343)
31 PF14592 Chondroitinas_B: Chon 98.5 6.5E-06 1.4E-10 73.6 14.9 198 30-266 3-235 (425)
32 PF12541 DUF3737: Protein of u 98.4 1.5E-05 3.2E-10 66.3 14.7 78 150-247 150-228 (277)
33 PLN02773 pectinesterase 98.3 0.0001 2.3E-09 64.1 19.0 47 25-74 12-63 (317)
34 smart00656 Amb_all Amb_all dom 98.2 1.2E-05 2.6E-10 65.2 10.4 97 147-243 31-143 (190)
35 COG3866 PelB Pectate lyase [Ca 98.2 6.4E-05 1.4E-09 63.7 14.5 116 97-244 95-229 (345)
36 PF03718 Glyco_hydro_49: Glyco 98.2 0.00061 1.3E-08 62.3 20.2 158 47-244 256-441 (582)
37 smart00656 Amb_all Amb_all dom 98.1 0.00061 1.3E-08 55.3 18.1 159 60-266 10-189 (190)
38 PLN02671 pectinesterase 98.1 0.0008 1.7E-08 59.5 19.4 47 25-73 66-116 (359)
39 COG3866 PelB Pectate lyase [Ca 98.1 6.6E-05 1.4E-09 63.6 11.9 116 149-267 94-230 (345)
40 PLN02682 pectinesterase family 98.1 0.0005 1.1E-08 60.9 17.8 45 29-74 80-128 (369)
41 PLN02432 putative pectinestera 98.1 0.00059 1.3E-08 58.8 17.7 47 25-74 18-69 (293)
42 PRK10531 acyl-CoA thioesterase 98.1 0.00065 1.4E-08 61.1 18.5 49 23-73 87-140 (422)
43 PLN02665 pectinesterase family 98.0 0.0013 2.8E-08 58.4 18.8 208 25-267 75-294 (366)
44 PLN02634 probable pectinestera 98.0 0.0011 2.3E-08 58.6 17.9 48 25-74 63-114 (359)
45 PLN02176 putative pectinestera 98.0 0.00096 2.1E-08 58.6 17.4 203 24-267 45-267 (340)
46 PLN02933 Probable pectinestera 97.9 0.0011 2.3E-08 61.6 18.1 47 25-74 225-276 (530)
47 PLN02497 probable pectinestera 97.9 0.00066 1.4E-08 59.4 15.8 48 24-74 38-90 (331)
48 PLN02304 probable pectinestera 97.9 0.0015 3.3E-08 58.1 18.0 49 24-74 81-133 (379)
49 PLN02301 pectinesterase/pectin 97.9 0.0012 2.6E-08 61.7 17.7 47 25-74 243-294 (548)
50 PF00544 Pec_lyase_C: Pectate 97.8 0.00011 2.3E-09 60.2 8.9 97 148-244 37-158 (200)
51 PF01696 Adeno_E1B_55K: Adenov 97.8 0.0053 1.1E-07 54.5 19.4 175 16-247 45-223 (386)
52 PLN02484 probable pectinestera 97.8 0.002 4.3E-08 60.9 17.9 49 25-74 279-331 (587)
53 PLN02170 probable pectinestera 97.8 0.0021 4.5E-08 59.6 17.4 49 24-74 231-284 (529)
54 PF01095 Pectinesterase: Pecti 97.8 0.00067 1.5E-08 58.9 13.4 44 29-74 10-58 (298)
55 PLN02506 putative pectinestera 97.8 0.0016 3.5E-08 60.7 16.5 48 25-74 239-290 (537)
56 PLN02708 Probable pectinestera 97.8 0.0037 7.9E-08 58.7 18.9 48 25-74 248-300 (553)
57 PLN02713 Probable pectinestera 97.8 0.0023 4.9E-08 60.2 17.2 48 25-74 257-311 (566)
58 PLN02488 probable pectinestera 97.8 0.0043 9.4E-08 57.1 18.6 48 25-74 204-255 (509)
59 PLN03043 Probable pectinestera 97.8 0.0019 4.2E-08 60.4 16.6 48 24-74 229-284 (538)
60 PRK10123 wcaM putative colanic 97.8 0.00099 2.1E-08 56.3 13.1 221 10-267 30-281 (464)
61 PLN02745 Putative pectinestera 97.7 0.0037 8.1E-08 59.1 18.4 44 30-74 296-343 (596)
62 PLN02416 probable pectinestera 97.7 0.0022 4.7E-08 60.0 16.4 47 25-74 237-288 (541)
63 PF00544 Pec_lyase_C: Pectate 97.7 0.00068 1.5E-08 55.5 11.6 110 148-263 76-200 (200)
64 PLN02995 Probable pectinestera 97.7 0.0044 9.5E-08 58.0 17.5 48 25-74 230-283 (539)
65 PLN02197 pectinesterase 97.7 0.0036 7.7E-08 59.0 16.9 47 25-74 282-333 (588)
66 PLN02201 probable pectinestera 97.6 0.01 2.2E-07 55.2 18.1 48 25-74 213-264 (520)
67 PLN02916 pectinesterase family 97.5 0.012 2.6E-07 54.4 18.2 48 25-74 194-248 (502)
68 PLN02314 pectinesterase 97.5 0.0086 1.9E-07 56.7 17.4 43 30-74 289-336 (586)
69 PLN02217 probable pectinestera 97.5 0.0059 1.3E-07 58.3 16.1 43 30-74 261-308 (670)
70 PLN02468 putative pectinestera 97.5 0.0083 1.8E-07 56.6 16.8 48 25-74 265-316 (565)
71 PLN02990 Probable pectinestera 97.5 0.012 2.6E-07 55.5 17.5 47 25-74 266-317 (572)
72 PLN02313 Pectinesterase/pectin 97.4 0.0092 2E-07 56.5 16.6 47 25-74 282-333 (587)
73 PF07602 DUF1565: Protein of u 96.7 0.014 3E-07 49.1 9.2 92 173-266 91-188 (246)
74 COG3420 NosD Nitrous oxidase a 96.6 0.097 2.1E-06 45.5 13.8 110 149-268 174-286 (408)
75 PF12218 End_N_terminal: N ter 96.6 0.0038 8.3E-08 39.9 3.9 38 22-63 1-39 (67)
76 COG4677 PemB Pectin methyleste 96.5 0.085 1.8E-06 45.6 12.7 44 29-73 92-140 (405)
77 TIGR03804 para_beta_helix para 96.2 0.0093 2E-07 36.0 3.8 40 172-216 1-40 (44)
78 PF12708 Pectate_lyase_3: Pect 95.9 0.19 4.1E-06 41.2 12.0 96 158-264 94-195 (225)
79 TIGR03804 para_beta_helix para 95.8 0.016 3.6E-07 34.9 3.7 42 199-244 1-42 (44)
80 PRK10123 wcaM putative colanic 95.3 0.51 1.1E-05 40.3 12.0 44 178-222 150-194 (464)
81 PF01696 Adeno_E1B_55K: Adenov 95.0 1.2 2.6E-05 39.9 14.1 102 152-265 117-219 (386)
82 PF03211 Pectate_lyase: Pectat 95.0 0.32 7E-06 39.9 9.8 66 147-220 54-120 (215)
83 PF08480 Disaggr_assoc: Disagg 92.0 3.5 7.5E-05 33.0 10.5 89 156-244 2-109 (198)
84 PLN02773 pectinesterase 90.2 5.3 0.00011 35.1 11.0 85 151-247 97-186 (317)
85 PF14592 Chondroitinas_B: Chon 89.9 2 4.4E-05 39.0 8.4 103 147-252 215-330 (425)
86 PF03211 Pectate_lyase: Pectat 87.4 13 0.00028 30.7 10.8 38 149-188 77-115 (215)
87 PLN02708 Probable pectinestera 86.2 8.4 0.00018 36.6 10.4 82 150-243 324-410 (553)
88 PLN02713 Probable pectinestera 85.3 9.4 0.0002 36.4 10.3 81 152-244 336-421 (566)
89 PF08480 Disaggr_assoc: Disagg 85.0 9.6 0.00021 30.5 8.5 84 179-266 2-109 (198)
90 PLN02698 Probable pectinestera 84.8 8 0.00017 36.2 9.4 39 153-191 267-310 (497)
91 PLN02506 putative pectinestera 84.6 9.4 0.0002 36.1 9.9 84 149-244 312-400 (537)
92 PLN03043 Probable pectinestera 84.5 11 0.00023 35.8 10.2 83 149-243 306-393 (538)
93 KOG1777 Putative Zn-finger pro 84.5 22 0.00048 32.5 11.5 30 47-76 48-77 (625)
94 PLN02416 probable pectinestera 83.6 10 0.00022 35.9 9.7 82 151-244 312-398 (541)
95 PLN02301 pectinesterase/pectin 83.5 12 0.00026 35.5 10.1 84 149-244 316-404 (548)
96 PLN02201 probable pectinestera 83.4 16 0.00035 34.4 10.8 82 150-243 287-373 (520)
97 PLN02480 Probable pectinestera 83.3 9.4 0.0002 33.9 8.8 81 152-244 128-218 (343)
98 smart00722 CASH Domain present 83.3 16 0.00035 27.1 12.2 68 153-223 73-144 (146)
99 PLN02488 probable pectinestera 83.2 14 0.0003 34.6 10.1 83 150-244 278-365 (509)
100 PLN02468 putative pectinestera 83.1 11 0.00023 36.1 9.6 81 151-243 340-425 (565)
101 PLN02745 Putative pectinestera 81.7 18 0.00038 34.8 10.6 83 150-244 366-453 (596)
102 PLN02484 probable pectinestera 81.7 14 0.00029 35.5 9.8 83 149-243 353-440 (587)
103 PLN02217 probable pectinestera 81.5 10 0.00023 36.7 9.0 81 151-243 332-417 (670)
104 PLN02314 pectinesterase 81.4 15 0.00033 35.2 10.0 83 149-243 358-445 (586)
105 PLN02313 Pectinesterase/pectin 80.7 16 0.00035 35.0 10.0 83 150-244 356-443 (587)
106 PLN02990 Probable pectinestera 80.3 15 0.00033 35.1 9.6 80 152-243 343-427 (572)
107 PF01095 Pectinesterase: Pecti 77.4 7.5 0.00016 33.9 6.2 80 152-244 83-168 (298)
108 PLN02170 probable pectinestera 76.7 17 0.00038 34.2 8.7 84 149-244 306-394 (529)
109 PLN02916 pectinesterase family 76.3 20 0.00044 33.5 9.0 83 149-243 270-357 (502)
110 PLN02197 pectinesterase 75.9 19 0.00041 34.6 8.8 82 150-243 358-444 (588)
111 PLN02933 Probable pectinestera 74.6 21 0.00045 33.8 8.6 83 149-243 298-385 (530)
112 PF14262 DUF4353: Domain of un 73.9 56 0.0012 27.9 13.5 38 46-84 5-53 (264)
113 smart00710 PbH1 Parallel beta- 72.5 5.1 0.00011 19.9 2.6 9 208-216 4-12 (26)
114 PLN02682 pectinesterase family 70.5 32 0.00069 31.0 8.5 82 150-243 157-248 (369)
115 PLN02698 Probable pectinestera 70.3 23 0.00049 33.3 7.9 70 174-243 265-350 (497)
116 PLN02995 Probable pectinestera 69.8 22 0.00047 33.8 7.7 81 152-244 308-393 (539)
117 PLN02176 putative pectinestera 68.1 36 0.00077 30.3 8.2 79 153-243 119-208 (340)
118 PRK10531 acyl-CoA thioesterase 67.5 1E+02 0.0022 28.3 11.5 85 149-244 199-303 (422)
119 PLN02432 putative pectinestera 67.2 85 0.0018 27.3 10.7 80 152-243 90-173 (293)
120 PLN02304 probable pectinestera 66.5 45 0.00098 30.1 8.6 82 151-244 157-248 (379)
121 PLN02665 pectinesterase family 64.8 50 0.0011 29.7 8.5 86 149-246 147-242 (366)
122 PLN02497 probable pectinestera 62.1 54 0.0012 29.1 8.2 80 152-243 111-202 (331)
123 PLN02634 probable pectinestera 61.2 64 0.0014 28.9 8.5 80 153-244 146-235 (359)
124 PLN02671 pectinesterase 59.9 65 0.0014 28.9 8.3 84 149-244 147-239 (359)
125 PHA00672 hypothetical protein 55.2 62 0.0013 24.3 6.2 27 49-75 51-84 (152)
126 smart00722 CASH Domain present 54.3 84 0.0018 23.1 8.0 88 155-248 44-143 (146)
127 PRK09752 adhesin; Provisional 42.8 4.3E+02 0.0093 27.9 14.0 95 149-244 114-234 (1250)
128 cd07986 LPLAT_ACT14924-like Ly 40.3 29 0.00064 28.2 3.0 27 29-57 83-109 (210)
129 PF05342 Peptidase_M26_N: M26 39.6 36 0.00079 28.7 3.4 7 53-59 154-160 (250)
130 COG4677 PemB Pectin methyleste 38.8 1.2E+02 0.0025 26.9 6.3 83 151-244 184-286 (405)
131 cd07990 LPLAT_LCLAT1-like Lyso 35.9 35 0.00076 27.3 2.7 30 29-58 86-116 (193)
132 PRK15018 1-acyl-sn-glycerol-3- 34.8 32 0.0007 29.0 2.4 27 30-57 124-150 (245)
133 PF11429 Colicin_D: Colicin D; 34.0 26 0.00057 24.7 1.4 38 16-58 8-47 (92)
134 KOG2107 Uncharacterized conser 32.5 31 0.00067 27.1 1.7 13 46-58 122-134 (179)
135 cd07988 LPLAT_ABO13168-like Ly 32.3 31 0.00068 26.9 1.8 27 31-57 80-106 (163)
136 PF09251 PhageP22-tail: Salmon 29.3 3.4E+02 0.0073 25.1 7.8 82 176-266 261-367 (549)
137 PF02373 JmjC: JmjC domain, hy 27.6 39 0.00085 24.1 1.6 14 45-58 86-99 (114)
138 PRK09752 adhesin; Provisional 27.1 7.8E+02 0.017 26.1 11.1 70 172-244 114-192 (1250)
139 PF10162 G8: G8 domain; Inter 26.4 2.7E+02 0.0059 20.6 6.2 35 46-83 11-46 (125)
140 PRK14014 putative acyltransfer 25.0 69 0.0015 27.9 2.8 28 29-57 158-185 (301)
141 PF02187 GAS2: Growth-Arrest-S 24.4 1.9E+02 0.0042 19.4 4.2 30 31-60 4-33 (73)
142 cd07985 LPLAT_GPAT Lysophospho 22.6 69 0.0015 26.9 2.3 26 29-57 99-126 (235)
143 COG2731 EbgC Beta-galactosidas 22.4 50 0.0011 25.8 1.3 26 32-60 17-42 (154)
144 KOG1777 Putative Zn-finger pro 21.3 2.9E+02 0.0064 25.6 6.0 94 148-250 396-491 (625)
145 PF03079 ARD: ARD/ARD' family; 21.2 48 0.001 25.9 1.0 12 47-58 122-133 (157)
146 TIGR02364 dha_pts dihydroxyace 20.8 1.8E+02 0.0038 21.7 4.0 39 13-52 26-65 (125)
147 PLN02901 1-acyl-sn-glycerol-3- 20.3 99 0.0022 25.2 2.8 25 30-56 108-132 (214)
No 1
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=1.7e-51 Score=368.13 Aligned_cols=242 Identities=29% Similarity=0.463 Sum_probs=202.6
Q ss_pred ecCCCceeEEeeeccccCCCCchhHHHHHHHH-HhCCCCCCCcEEEECCC-eEEEeeEEe----cCceEEEEcCCeeEEe
Q 038762 7 LSTTHIHIHSVIDFGAKGDGIHYDTAAIQSAI-DACPPGNKPCQVRFPPG-EYLTATIRL----KSHVTLNIHEDATLLG 80 (268)
Q Consensus 7 ~~~~~~~~~~v~dyga~~dg~~d~t~aiq~Ai-~~~~~~~~g~~v~ip~G-~Y~~~~l~l----~s~~~l~~~~ga~l~~ 80 (268)
.+...+++++|+||||++||.+|||+|||+|| ++|++ .++++|+||+| +|+++++.+ +++++|+++ ++|++
T Consensus 60 ~~~~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~-~Ggg~v~vP~G~tyl~~~i~l~gp~ks~~~l~l~--g~L~~ 136 (431)
T PLN02218 60 ASLRTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSS-NGAVNLLVPKGNTYLLKSIQLTGPCKSIRTVQIF--GTLSA 136 (431)
T ss_pred cccCCCcEEEeeecccCCCCCcccHHHHHHHHHHhhhc-CCCcEEEECCCCeEEEeeeEecCccCCceEEEEE--EEEEe
Confidence 45567899999999999999999999999999 57887 77889999999 699999988 478999986 99999
Q ss_pred CCCCCCCCCCCCceEEEEEEeeeccEEEec--cEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccE
Q 038762 81 GPRIEDYPEESSRWYVVLAENATDVGITGG--GVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNV 158 (268)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~--G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv 158 (268)
+.++.+|+.. ..|+ .+.+.+||+|+|. |+|||+|+.||....... ...+| ..+|+++.|.+|+|+
T Consensus 137 s~d~~~y~~~-~~wi--~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~-------~~~~~---~~rP~~i~f~~~~nv 203 (431)
T PLN02218 137 SQKRSDYKDI-SKWI--MFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRN-------KAKPC---TKAPTALTFYNSKSL 203 (431)
T ss_pred CCChhhcccc-ccCE--EEecCcEEEEECCCCcEEeCCchhhhhcccccC-------CcCcc---CcCCEEEEEEccccE
Confidence 9999888642 4554 5689999999996 999999999997532110 01112 248999999999999
Q ss_pred EEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecCCCCCeecEEEEc
Q 038762 159 NVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATD 238 (268)
Q Consensus 159 ~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n 238 (268)
+|++++++|+|.|++++..|+|++|++++|.++.+++|+||||+.+|++|+|+||.|.+|||||++|+ +++||+|+|
T Consensus 204 ~I~gitl~nSp~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIks---gs~nI~I~n 280 (431)
T PLN02218 204 IVKNLRVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIES---GSQNVQIND 280 (431)
T ss_pred EEeCeEEEcCCCEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecC---CCceEEEEe
Confidence 99999999999999999999999999999999988999999999999999999999999999999999 366777777
Q ss_pred eEEecCCccEEeeeee----eeeEEeEEEEeeEC
Q 038762 239 SWIRTKSSAIKLGSAS----WFDFKALVFDNITI 268 (268)
Q Consensus 239 ~~~~~~~~gi~ig~~~----~~~~~ni~~~ni~i 268 (268)
|++.. .|||+|||+. ...++||+|+|++|
T Consensus 281 ~~c~~-GHGisIGS~g~~~~~~~V~nV~v~n~~~ 313 (431)
T PLN02218 281 ITCGP-GHGISIGSLGDDNSKAFVSGVTVDGAKL 313 (431)
T ss_pred EEEEC-CCCEEECcCCCCCCCceEEEEEEEccEE
Confidence 77754 4567776643 23566666666653
No 2
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=3.3e-51 Score=367.95 Aligned_cols=239 Identities=26% Similarity=0.443 Sum_probs=195.8
Q ss_pred CceeEEeeeccccCCCCchhHHHHHHHHH-hCCCCCCCcEEEECCC-eEEEeeEEe----cCceEEEEcCCeeEEeCCCC
Q 038762 11 HIHIHSVIDFGAKGDGIHYDTAAIQSAID-ACPPGNKPCQVRFPPG-EYLTATIRL----KSHVTLNIHEDATLLGGPRI 84 (268)
Q Consensus 11 ~~~~~~v~dyga~~dg~~d~t~aiq~Ai~-~~~~~~~g~~v~ip~G-~Y~~~~l~l----~s~~~l~~~~ga~l~~~~~~ 84 (268)
.+++++|+||||++||.+|||+|||+||+ +|++ .+|++|+||+| +|+++++.| +|+++|+++ ++|+++.++
T Consensus 49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~-~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~--g~l~~~~d~ 125 (443)
T PLN02793 49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSS-KVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQIS--GTIIAPKDP 125 (443)
T ss_pred CceEEEhhhcccCCCCCCccHHHHHHHHHHHhcc-CCCCEEEECCCceEEEEEEEECCccCCCeEEEEE--EEEEccCCh
Confidence 45799999999999999999999999998 7887 78999999999 599999999 899999998 899999988
Q ss_pred CCCCCCCCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEE
Q 038762 85 EDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVR 164 (268)
Q Consensus 85 ~~~~~~~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~ 164 (268)
.+|+....+ .++++.+.+|++|+|.|+|||+|+.||...... ..... ...||+++.|.+|+|++|++++
T Consensus 126 ~~w~~~~~~-~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~-------~~~~~---~~~rP~~i~f~~~~nv~v~git 194 (443)
T PLN02793 126 DVWKGLNPR-KWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKI-------NHTNP---CRHAPTAITFHKCKDLRVENLN 194 (443)
T ss_pred HHccCCCCc-eEEEEecCceEEEEeceEEECCCcccccccccc-------cCCCC---ccCCceEEEEEeeccEEEECeE
Confidence 888643222 345678999999999999999999999632110 00011 1247999999999999999999
Q ss_pred EeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecCCCCCeecEEEEceEEecC
Q 038762 165 LREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 165 i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~ 244 (268)
++|+|.|++++..|+|++|++++|.++..++|+||||+.+|++|+|+||.|.++||||++|+ +++||+|+||++..
T Consensus 195 l~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~---~s~nI~I~n~~c~~- 270 (443)
T PLN02793 195 VIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVG---NSSRIKIRNIACGP- 270 (443)
T ss_pred EEcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecC---CcCCEEEEEeEEeC-
Confidence 99999999999999999999999999988999999999999999999999999999999997 34555555555544
Q ss_pred CccEEeeee----eeeeEEeEEEEeeE
Q 038762 245 SSAIKLGSA----SWFDFKALVFDNIT 267 (268)
Q Consensus 245 ~~gi~ig~~----~~~~~~ni~~~ni~ 267 (268)
.|||+|||+ ....++||+++|++
T Consensus 271 GhGisIGSlg~~~~~~~V~nV~v~n~~ 297 (443)
T PLN02793 271 GHGISIGSLGKSNSWSEVRDITVDGAF 297 (443)
T ss_pred CccEEEecccCcCCCCcEEEEEEEccE
Confidence 245555553 22345555555544
No 3
>PLN02155 polygalacturonase
Probab=100.00 E-value=5.1e-51 Score=361.34 Aligned_cols=237 Identities=23% Similarity=0.385 Sum_probs=193.0
Q ss_pred ecCCCceeEEeeeccccCCCCchhHHHHHHHHH-hCCCCCCCcEEEECCCeEEEeeEEe----cCceEEEEcCCeeEEeC
Q 038762 7 LSTTHIHIHSVIDFGAKGDGIHYDTAAIQSAID-ACPPGNKPCQVRFPPGEYLTATIRL----KSHVTLNIHEDATLLGG 81 (268)
Q Consensus 7 ~~~~~~~~~~v~dyga~~dg~~d~t~aiq~Ai~-~~~~~~~g~~v~ip~G~Y~~~~l~l----~s~~~l~~~~ga~l~~~ 81 (268)
++...++++||+||||++||.+|+|+|||+||+ +|++ .+|++|+||+|+|+++++.| ||+++|+++ | +|+++
T Consensus 20 ~~~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~-~gGg~v~vP~G~yl~g~i~l~gpcksnv~l~l~-G-~l~~~ 96 (394)
T PLN02155 20 VSSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGS-ASSATVVVPTGTFLLKVITFGGPCKSKITFQVA-G-TVVAP 96 (394)
T ss_pred ccccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHccc-CCCeEEEECCCcEEEEEEEEcccCCCCceEEEe-e-EEECc
Confidence 556888999999999999999999999999995 8988 78999999999999999998 899999998 4 67776
Q ss_pred CCCCCCCCCCCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEE
Q 038762 82 PRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVW 161 (268)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~ 161 (268)
.+...|.. ...| +.+.+.+++.|.| |+|||+|+.||....... .| ..+|+++.|.+|+|++|+
T Consensus 97 ~d~~~~~~-~~~w--i~~~~~~~i~i~G-G~iDGqG~~ww~~~~~~~----------~~---~~~p~~i~~~~~~nv~i~ 159 (394)
T PLN02155 97 EDYRTFGN-SGYW--ILFNKVNRFSLVG-GTFDARANGFWSCRKSGQ----------NC---PPGVRSISFNSAKDVIIS 159 (394)
T ss_pred cccccccc-ccee--EEEECcCCCEEEc-cEEecCceeEEEcccCCC----------CC---CCcccceeEEEeeeEEEE
Confidence 55444421 1234 5678999999999 999999999996322110 01 135789999999999999
Q ss_pred eEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecCCCCCeecEEEEceEE
Q 038762 162 NVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWI 241 (268)
Q Consensus 162 ~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~ 241 (268)
+++++|+|.|++++..|++++|++++|.++..++|+||||+.+|++|+|+||.|.++||||++|++ ++||+|+||++
T Consensus 160 gitl~nSp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~g---s~nI~I~n~~c 236 (394)
T PLN02155 160 GVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPG---TRNFLITKLAC 236 (394)
T ss_pred CeEEEcCCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCC---CceEEEEEEEE
Confidence 999999999999999999999999999999889999999999999999999999999999999983 45555555555
Q ss_pred ecCCccEEeeee----eeeeEEeEEEEeeE
Q 038762 242 RTKSSAIKLGSA----SWFDFKALVFDNIT 267 (268)
Q Consensus 242 ~~~~~gi~ig~~----~~~~~~ni~~~ni~ 267 (268)
.. .||++|||+ ....++||+++|++
T Consensus 237 ~~-GhGisIGS~g~~~~~~~V~nV~v~n~~ 265 (394)
T PLN02155 237 GP-GHGVSIGSLAKELNEDGVENVTVSSSV 265 (394)
T ss_pred EC-CceEEeccccccCCCCcEEEEEEEeeE
Confidence 54 345555553 23445555555554
No 4
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=5.5e-50 Score=356.19 Aligned_cols=218 Identities=26% Similarity=0.392 Sum_probs=180.2
Q ss_pred CCceeEEeeeccccCCCCchhHHHHHHHHH-hCCCCCCCcEEEECCCeEEEeeEEec------CceEEEEcCCeeEEeCC
Q 038762 10 THIHIHSVIDFGAKGDGIHYDTAAIQSAID-ACPPGNKPCQVRFPPGEYLTATIRLK------SHVTLNIHEDATLLGGP 82 (268)
Q Consensus 10 ~~~~~~~v~dyga~~dg~~d~t~aiq~Ai~-~~~~~~~g~~v~ip~G~Y~~~~l~l~------s~~~l~~~~ga~l~~~~ 82 (268)
..++++||+||||++||.+|||+|||+||+ +|++ .++++|+||||+|+++++.|+ ++++| +|+++.
T Consensus 32 ~~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~-~Ggg~V~vP~G~yl~g~i~lkgpc~~~s~v~l------~L~~s~ 104 (404)
T PLN02188 32 SSTFLFDVRSFGARANGHTDDSKAFMAAWKAACAS-TGAVTLLIPPGTYYIGPVQFHGPCTNVSSLTF------TLKAAT 104 (404)
T ss_pred CCceEEehhhcCcCCCCCeeCHHHHHHHHHHHhcc-CCCeEEEECCCeEEEEeEEeCCCcCcceeEEE------EEEcCC
Confidence 556899999999999999999999999996 6887 778899999999999999996 45555 788898
Q ss_pred CCCCCCCCCCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEe
Q 038762 83 RIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWN 162 (268)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~ 162 (268)
++++|+.. ..|.. +..++||+|+|.|+|||+|+.||....... .. ....||+++.|.+|+|++|++
T Consensus 105 d~~~y~~~-~~~i~--~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~--------~~---~~~~rP~~i~f~~~~nv~i~g 170 (404)
T PLN02188 105 DLSRYGSG-NDWIE--FGWVNGLTLTGGGTFDGQGAAAWPFNKCPI--------RK---DCKLLPTSVKFVNMNNTVVRG 170 (404)
T ss_pred CHHHCCCc-cceEE--EeceeeEEEEeeEEEeCCCccccccccccc--------CC---CCCcCceEEEEEeeeeEEEeC
Confidence 98888642 34653 467899999999999999999996332110 00 113589999999999999999
Q ss_pred EEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecCCCCCeecEEEEceEEe
Q 038762 163 VRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIR 242 (268)
Q Consensus 163 v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~ 242 (268)
++++|+|.|++++..|++++|++++|.++.+++|+||||+++|++|+|+||.|.++||||++|++ ++||+|+|+++.
T Consensus 171 itl~nSp~w~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg---~~nI~I~n~~c~ 247 (404)
T PLN02188 171 ITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQG---NSQVTITRIRCG 247 (404)
T ss_pred eEEEcCCCeEEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccC---CccEEEEEEEEc
Confidence 99999999999999999999999999999889999999999999999999999999999999873 344444444443
Q ss_pred cCCccEEeee
Q 038762 243 TKSSAIKLGS 252 (268)
Q Consensus 243 ~~~~gi~ig~ 252 (268)
. .|||+|||
T Consensus 248 ~-ghGisiGS 256 (404)
T PLN02188 248 P-GHGISVGS 256 (404)
T ss_pred C-CCcEEeCC
Confidence 2 23444444
No 5
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=2.7e-49 Score=353.11 Aligned_cols=237 Identities=25% Similarity=0.426 Sum_probs=193.5
Q ss_pred eEEEeecCCCceeEEeeeccccCCCCchhHHHHHHHHHh-CCCCCCCcEEEECCCe-EEEeeEEecCc-----eEEEEcC
Q 038762 2 QLLLLLSTTHIHIHSVIDFGAKGDGIHYDTAAIQSAIDA-CPPGNKPCQVRFPPGE-YLTATIRLKSH-----VTLNIHE 74 (268)
Q Consensus 2 ~~~~~~~~~~~~~~~v~dyga~~dg~~d~t~aiq~Ai~~-~~~~~~g~~v~ip~G~-Y~~~~l~l~s~-----~~l~~~~ 74 (268)
++++|.-...++++||+||||++||.+|||+|||+||++ |++ .++++|+||+|+ |+++++.|+++ +++.++
T Consensus 11 ~~~~~~~~~~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~-~ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~- 88 (456)
T PLN03003 11 SLFFLQIFTSSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSG-TGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQML- 88 (456)
T ss_pred eeeeeeeeeeeeEEehhhcCCCCCCCcccHHHHHHHHHHhhhc-cCCCEEEECCCceEEeeeeEeCCCccCcceeeccC-
Confidence 445566677888999999999999999999999999987 876 788999999994 88999999752 555555
Q ss_pred CeeEEeCCCCCCCCCCCCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEec
Q 038762 75 DATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLG 154 (268)
Q Consensus 75 ga~l~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 154 (268)
++|+++.. ..|......| +.+.++++++|+|.|+|||+|+.||... ..+|+++.|.+
T Consensus 89 -G~i~ap~~-~~w~~~~~~w--I~f~~~~~i~I~G~GtIDGqG~~wW~~~-------------------~~rP~~l~f~~ 145 (456)
T PLN03003 89 -GKLVAPSK-GNWKGDKDQW--ILFTDIEGLVIEGDGEINGQGSSWWEHK-------------------GSRPTALKFRS 145 (456)
T ss_pred -ceEecCcc-ccccCCCcce--EEEEcccceEEeccceEeCCchhhhhcc-------------------cCCceEEEEEe
Confidence 56766543 3453322334 5678999999999999999999999531 24799999999
Q ss_pred cccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecCCCCCeecE
Q 038762 155 CRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNL 234 (268)
Q Consensus 155 ~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv 234 (268)
|+|++|++++++|+|.|++++..|++++|++++|.++..++|+||||+.+|++|+|+||.|.+|||||++|++ ++||
T Consensus 146 ~~nv~I~gitl~NSp~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksg---s~NI 222 (456)
T PLN03003 146 CNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG---TSNI 222 (456)
T ss_pred cCCcEEeCeEEecCCcEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCC---CccE
Confidence 9999999999999999999999999999999999999889999999999999999999999999999999984 5566
Q ss_pred EEEceEEecCCccEEeeeee----eeeEEeEEEEeeE
Q 038762 235 TATDSWIRTKSSAIKLGSAS----WFDFKALVFDNIT 267 (268)
Q Consensus 235 ~v~n~~~~~~~~gi~ig~~~----~~~~~ni~~~ni~ 267 (268)
+|+||++.. .|||+|||+. ...++||+++|++
T Consensus 223 ~I~n~~c~~-GHGISIGSlg~~g~~~~V~NV~v~n~~ 258 (456)
T PLN03003 223 HISGIDCGP-GHGISIGSLGKDGETATVENVCVQNCN 258 (456)
T ss_pred EEEeeEEEC-CCCeEEeeccCCCCcceEEEEEEEeeE
Confidence 666666654 3556666542 1345666666655
No 6
>PLN03010 polygalacturonase
Probab=100.00 E-value=1.4e-48 Score=346.56 Aligned_cols=229 Identities=24% Similarity=0.398 Sum_probs=197.2
Q ss_pred CCCceeEEeeeccccCCCCchhHHHHHHHHHh-CCCCCC-CcEEEECCC-eEEEeeEEecC-----ceEEEEcCCeeEEe
Q 038762 9 TTHIHIHSVIDFGAKGDGIHYDTAAIQSAIDA-CPPGNK-PCQVRFPPG-EYLTATIRLKS-----HVTLNIHEDATLLG 80 (268)
Q Consensus 9 ~~~~~~~~v~dyga~~dg~~d~t~aiq~Ai~~-~~~~~~-g~~v~ip~G-~Y~~~~l~l~s-----~~~l~~~~ga~l~~ 80 (268)
...++++||+||||++||.+|||+|||+||++ |.. .+ +++|+|||| +|+++++.|++ +++|+++ ++|++
T Consensus 41 ~~~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~-~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~--G~l~~ 117 (409)
T PLN03010 41 LVNGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCGG-EGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLD--GIIVA 117 (409)
T ss_pred cCCCcEEeeeecCcCCCCCcccHHHHHHHHHHHccC-CCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEc--cEEEc
Confidence 34678999999999999999999999999985 543 22 379999999 79999999994 7999998 78999
Q ss_pred CCCCCCCCCC-CCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEE
Q 038762 81 GPRIEDYPEE-SSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVN 159 (268)
Q Consensus 81 ~~~~~~~~~~-~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~ 159 (268)
+.++..|+.. ...| +.+.+.+|++|+|.|+|||+|+.||. ++.|.+|+|++
T Consensus 118 ~~d~~~w~~~~~~~w--i~f~~v~nv~I~G~G~IDG~G~~ww~--------------------------~l~~~~~~nv~ 169 (409)
T PLN03010 118 PSNIVAWSNPKSQMW--ISFSTVSGLMIDGSGTIDGRGSSFWE--------------------------ALHISKCDNLT 169 (409)
T ss_pred cCChhhccCCCCcce--EEEecccccEEeeceEEeCCCccccc--------------------------eEEEEeecCeE
Confidence 9888888542 2334 45689999999999999999999983 48899999999
Q ss_pred EEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecCCC-----------
Q 038762 160 VWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYT----------- 228 (268)
Q Consensus 160 I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~----------- 228 (268)
|++++++|+|.|++++..|++++|++++|.++..++|+||||+..|++|+|+||++.++||||++|++.
T Consensus 170 v~gitl~nsp~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~ 249 (409)
T PLN03010 170 INGITSIDSPKNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCG 249 (409)
T ss_pred EeeeEEEcCCceEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeE
Confidence 999999999999999999999999999999988889999999999999999999999999999999842
Q ss_pred ----------------CCeecEEEEceEEecCCccEEeeee--eeeeEEeEEEEeeEC
Q 038762 229 ----------------GPLYNLTATDSWIRTKSSAIKLGSA--SWFDFKALVFDNITI 268 (268)
Q Consensus 229 ----------------~~~~nv~v~n~~~~~~~~gi~ig~~--~~~~~~ni~~~ni~i 268 (268)
..++||+|+||++.++.+|++|.+. ..+.++||+|+|++|
T Consensus 250 ~gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G~~G~v~nItf~nI~m 307 (409)
T PLN03010 250 PGHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNISFENITL 307 (409)
T ss_pred CcCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecCCCEEEEEeEEEeEEE
Confidence 1278888888888888888777553 245677777777765
No 7
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1e-41 Score=308.30 Aligned_cols=249 Identities=33% Similarity=0.513 Sum_probs=206.8
Q ss_pred CCCceeEEeeeccccCCCCchhHHHHHHHHHhCCCCCCCcEEEECCCeEEEeeEEecCceEEEEcCCeeEEeCCCCCCCC
Q 038762 9 TTHIHIHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNIHEDATLLGGPRIEDYP 88 (268)
Q Consensus 9 ~~~~~~~~v~dyga~~dg~~d~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~~l~l~s~~~l~~~~ga~l~~~~~~~~~~ 88 (268)
.+....++|.+|||++||.+++++|||+||++|++ .+|++|+||||+|+.++|.|||+++|++++|++|+++.++.+|+
T Consensus 77 ~~~~t~~sv~~~ga~gDG~t~~~~aiq~AI~~ca~-a~Gg~V~lPaGtylsg~l~LKS~~~L~l~egatl~~~~~p~~y~ 155 (542)
T COG5434 77 AATDTAFSVSDDGAVGDGATDNTAAIQAAIDACAS-AGGGTVLLPAGTYLSGPLFLKSNVTLHLAEGATLLASSNPKDYP 155 (542)
T ss_pred ccccceeeeccccccccCCccCHHHHHHHHHhhhh-hcCceEEECCceeEeeeEEEecccEEEecCCceeeCCCChhhcc
Confidence 46667899999999999999999999999999997 78999999999999999999999999999999999999999998
Q ss_pred CC-----CCceEEE-----------------------EEEeeeccE-EEeccEEecCC----cccccchhhcccceeccc
Q 038762 89 EE-----SSRWYVV-----------------------LAENATDVG-ITGGGVVDGQA----MKFVVTKNEIKNVMVSWN 135 (268)
Q Consensus 89 ~~-----~~~~~~i-----------------------~~~~~~nv~-I~G~G~i~g~g----~~~~~~~~~~~~~~~~~~ 135 (268)
.. ...+..+ .....+|.. |.|.++++|++ ..||..... .-.++.
T Consensus 156 ~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~~~g~-~~~~i~-- 232 (542)
T COG5434 156 SFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGLGA-VETRIG-- 232 (542)
T ss_pred ccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhhcccc-hhhccc--
Confidence 41 0111111 122344444 67777777754 113332220 000011
Q ss_pred ccCCCCCCCCCceEEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEE
Q 038762 136 HTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQI 215 (268)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i 215 (268)
....+|..+.+..|+||+++++++.+++.|+++++.|+|++++|++|.++... ++|||++.+|+|++|++|+|
T Consensus 233 ------~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~f 305 (542)
T COG5434 233 ------GKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRF 305 (542)
T ss_pred ------ccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEE
Confidence 11158999999999999999999999999999999999999999999987654 99999999999999999999
Q ss_pred ecCCceeeecCCC--------CCeecEEEEceEEecCCccEEeeeeeeeeEEeEEEEeeEC
Q 038762 216 DTGDDAICPKTYT--------GPLYNLTATDSWIRTKSSAIKLGSASWFDFKALVFDNITI 268 (268)
Q Consensus 216 ~~gDD~i~i~s~~--------~~~~nv~v~n~~~~~~~~gi~ig~~~~~~~~ni~~~ni~i 268 (268)
.++||||++|++. ++++|++|+||+|...+.++.+|++.++.++||++||+.|
T Consensus 306 dtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~ 366 (542)
T COG5434 306 DTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVM 366 (542)
T ss_pred ecCCceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeee
Confidence 9999999999974 4679999999999988888999999999999999999976
No 8
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=1.5e-37 Score=272.41 Aligned_cols=202 Identities=33% Similarity=0.517 Sum_probs=161.2
Q ss_pred CCCcEEEECCCeEEEeeEEec----CceEEEEcCCeeEEeCCCCCCCCCCCCceEEEEEEeeeccEEEeccEEecCCccc
Q 038762 45 NKPCQVRFPPGEYLTATIRLK----SHVTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKF 120 (268)
Q Consensus 45 ~~g~~v~ip~G~Y~~~~l~l~----s~~~l~~~~ga~l~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~ 120 (268)
.++++|+||+|+|+++++.|+ ++.++.++ +++.++.....++ .+.++.+.+++|++|+|.|+|||+|..|
T Consensus 4 ~~~~~v~vP~g~~~~~~~~l~~~l~~~~~~~l~--G~~~~~~~~~~~~----~~~~i~~~~~~ni~i~G~G~IDG~G~~w 77 (326)
T PF00295_consen 4 IGGGTVVVPAGTYLLGPLFLKSTLHSDVGLTLD--GTINFSYDNWEGP----NSALIYAENAENITITGKGTIDGNGQAW 77 (326)
T ss_dssp EEEESEEESTSTEEEEETSEETECETTCEEEEE--SEEEEG-EESTSE-----SEEEEEESEEEEECTTSSEEE--GGGT
T ss_pred CcCCEEEECCCCeEEceeEEEcccCCCeEEEEE--EEEEeCCCcccCC----ccEEEEEEceEEEEecCCceEcCchhhh
Confidence 456799999999999998887 67778887 5555553322222 1467788999999999999999999999
Q ss_pred ccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCcee
Q 038762 121 VVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGI 200 (268)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi 200 (268)
|....... .....||+++.|..|+|++|++++++|+|.|++++..|+|++|++++|.++...+++|||
T Consensus 78 ~~~~~~~~------------~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGi 145 (326)
T PF00295_consen 78 WDGSGDAN------------NNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGI 145 (326)
T ss_dssp CSSCTTHC------------CSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SE
T ss_pred hccccccc------------cccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceE
Confidence 97543311 123468999999999999999999999999999999999999999999998878999999
Q ss_pred eecCcccEEEEeeEEecCCceeeecCCCCCeecEEEEceEEecCCccEEeeeeeee----eEEeEEEEeeEC
Q 038762 201 DIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIKLGSASWF----DFKALVFDNITI 268 (268)
Q Consensus 201 ~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~~~gi~ig~~~~~----~~~ni~~~ni~i 268 (268)
++.+|++|+|+||.+.++||||++|++ ..||+|+||++.. .||++||++... .++||+|+|++|
T Consensus 146 d~~~s~nv~I~n~~i~~gDD~Iaiks~---~~ni~v~n~~~~~-ghGisiGS~~~~~~~~~i~nV~~~n~~i 213 (326)
T PF00295_consen 146 DIDSSKNVTIENCFIDNGDDCIAIKSG---SGNILVENCTCSG-GHGISIGSEGSGGSQNDIRNVTFENCTI 213 (326)
T ss_dssp EEESEEEEEEESEEEESSSESEEESSE---ECEEEEESEEEES-SSEEEEEEESSSSE--EEEEEEEEEEEE
T ss_pred EEEeeeEEEEEEeecccccCccccccc---ccceEEEeEEEec-cccceeeeccCCccccEEEeEEEEEEEe
Confidence 999999999999999999999999993 4488888888865 567888876443 578888888764
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.97 E-value=5.8e-29 Score=218.80 Aligned_cols=171 Identities=23% Similarity=0.280 Sum_probs=133.0
Q ss_pred CCceeEEeeeccccCCCCchhHHHHHHHHHhCCCCCCCcEEEECCCeEEEeeEEecCceEEEEcCCee---EEeCCCCCC
Q 038762 10 THIHIHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLKSHVTLNIHEDAT---LLGGPRIED 86 (268)
Q Consensus 10 ~~~~~~~v~dyga~~dg~~d~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~~l~l~s~~~l~~~~ga~---l~~~~~~~~ 86 (268)
...+.+++++|||+||+.+|+|+|||+||++|++ ++++|++|||+|+.+++.|+++++|.++++++ +.+.
T Consensus 33 ~p~r~~dv~~fGa~~dG~td~T~ALQaAIdaAa~--gG~tV~Lp~G~Y~~G~L~L~spltL~G~~gAt~~vIdG~----- 105 (455)
T TIGR03808 33 TSTLGRDATQYGVRPNSPDDQTRALQRAIDEAAR--AQTPLALPPGVYRTGPLRLPSGAQLIGVRGATRLVFTGG----- 105 (455)
T ss_pred CCccCCCHHHcCcCCCCcchHHHHHHHHHHHhhc--CCCEEEECCCceecccEEECCCcEEEecCCcEEEEEcCC-----
Confidence 5556799999999999999999999999999875 36799999999999999999999999999986 3221
Q ss_pred CCCCCCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEe
Q 038762 87 YPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLR 166 (268)
Q Consensus 87 ~~~~~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~ 166 (268)
..++.....++|+|+|. +|+|+|..|. .++.++++..|++++|++++|.
T Consensus 106 -------~~lIiai~A~nVTIsGL-tIdGsG~dl~-----------------------~rdAgI~v~~a~~v~Iedn~L~ 154 (455)
T TIGR03808 106 -------PSLLSSEGADGIGLSGL-TLDGGGIPLP-----------------------QRRGLIHCQGGRDVRITDCEIT 154 (455)
T ss_pred -------ceEEEEecCCCeEEEee-EEEeCCCccc-----------------------CCCCEEEEccCCceEEEeeEEE
Confidence 13455688999999996 9999997652 2567899999999999999999
Q ss_pred CCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEec-CCceee
Q 038762 167 EPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDT-GDDAIC 223 (268)
Q Consensus 167 n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~-gDD~i~ 223 (268)
++..||+.++.|+ ..|.+..|... ...+|+++.+++.+|++++++. .|++|.
T Consensus 155 gsg~FGI~L~~~~-~~I~~N~I~g~----~~~~I~lw~S~g~~V~~N~I~g~RD~gi~ 207 (455)
T TIGR03808 155 GSGGNGIWLETVS-GDISGNTITQI----AVTAIVSFDALGLIVARNTIIGANDNGIE 207 (455)
T ss_pred cCCcceEEEEcCc-ceEecceEecc----ccceEEEeccCCCEEECCEEEccCCCCeE
Confidence 9998999999999 44444444432 2333555555555555555544 444443
No 10
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.93 E-value=3.3e-24 Score=178.62 Aligned_cols=208 Identities=26% Similarity=0.327 Sum_probs=141.7
Q ss_pred eEEeeeccccCCCCchhHHHHHHHHHhCCCCCCCcEEEECCCeEEEe-eEEecCceEEEEcCC-eeEEe-CCCCCCCCCC
Q 038762 14 IHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYLTA-TIRLKSHVTLNIHED-ATLLG-GPRIEDYPEE 90 (268)
Q Consensus 14 ~~~v~dyga~~dg~~d~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~-~l~l~s~~~l~~~~g-a~l~~-~~~~~~~~~~ 90 (268)
++||+||||+|||.+|+|+|||+||+++++ .++++|+||||+|++. ++.++++++|+++++ .++.. ......+.
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~~~-~~g~~v~~P~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~-- 77 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDAAAA-AGGGVVYFPPGTYRISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFS-- 77 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHHHCS-TTSEEEEE-SEEEEESS-EEE-TTEEEEESSTTTEEEEECTTTSTSC--
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhhccc-CCCeEEEEcCcEEEEeCCeEcCCCeEEEccCCCeeEEEecCcccccc--
Confidence 479999999999999999999999966555 6799999999999986 499999999999876 23332 22211111
Q ss_pred CCceEEEEEE--------eeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEe
Q 038762 91 SSRWYVVLAE--------NATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWN 162 (268)
Q Consensus 91 ~~~~~~i~~~--------~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~ 162 (268)
.......+. ..+|++|.| ..... .....++.+..++++.|++
T Consensus 78 -~~~~~~~~~~~~~~~~~~i~nl~i~~------~~~~~-----------------------~~~~~~i~~~~~~~~~i~n 127 (225)
T PF12708_consen 78 -VVPGIGVFDSGNSNIGIQIRNLTIDG------NGIDP-----------------------NNNNNGIRFNSSQNVSISN 127 (225)
T ss_dssp -CEEEEEECCSCSCCEEEEEEEEEEEE------TCGCE------------------------SCEEEEEETTEEEEEEEE
T ss_pred -cccceeeeecCCCCceEEEEeeEEEc------ccccC-----------------------CCCceEEEEEeCCeEEEEe
Confidence 001111111 144444444 32221 0124579999999999999
Q ss_pred EEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecC-cccEEEEeeEEecCCceeeecCCCCCeecEEEEceEE
Q 038762 163 VRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIED-SNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWI 241 (268)
Q Consensus 163 v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~-~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~ 241 (268)
|+++++...++.+..++...+.+.... .++.+.+ ..++.+.++.+..+++++..++ +++.++||++
T Consensus 128 v~~~~~~~~~i~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~i~n~~~ 194 (225)
T PF12708_consen 128 VRIENSGGDGIYFNTGTDYRIIGSTHV--------SGIFIDNGSNNVIVNNCIFNGGDNGIILGN-----NNITISNNTF 194 (225)
T ss_dssp EEEES-SS-SEEEECCEECEEECCEEE--------EEEEEESCEEEEEEECEEEESSSCSEECEE-----EEEEEECEEE
T ss_pred EEEEccCccEEEEEccccCcEeecccc--------eeeeeccceeEEEECCccccCCCceeEeec-----ceEEEEeEEE
Confidence 999999888888886665555433322 1355543 3467789999999888854433 8999999999
Q ss_pred ec-CCccEEeeeeeeeeEEeEEEEeeE
Q 038762 242 RT-KSSAIKLGSASWFDFKALVFDNIT 267 (268)
Q Consensus 242 ~~-~~~gi~ig~~~~~~~~ni~~~ni~ 267 (268)
.. ...||.+-..+...++|++|+|+.
T Consensus 195 ~~~~~~gi~i~~~~~~~i~n~~i~~~~ 221 (225)
T PF12708_consen 195 EGNCGNGINIEGGSNIIISNNTIENCD 221 (225)
T ss_dssp ESSSSESEEEEECSEEEEEEEEEESSS
T ss_pred CCccceeEEEECCeEEEEEeEEEECCc
Confidence 97 678999988777899999999874
No 11
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.77 E-value=2.5e-17 Score=143.56 Aligned_cols=168 Identities=17% Similarity=0.217 Sum_probs=126.6
Q ss_pred HHHHHHhCCCCCCCcEEEECCCeEEE-eeEEec-CceEEEEcCC--eeEEeCCCCCCCCCCCCceEEEEEEeeeccEEEe
Q 038762 34 IQSAIDACPPGNKPCQVRFPPGEYLT-ATIRLK-SHVTLNIHED--ATLLGGPRIEDYPEESSRWYVVLAENATDVGITG 109 (268)
Q Consensus 34 iq~Ai~~~~~~~~g~~v~ip~G~Y~~-~~l~l~-s~~~l~~~~g--a~l~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G 109 (268)
||+|++++++ |.+|+||||+|.. +++.+. ++++|..++. ++|.+..... ... .+ ...+++|+|++
T Consensus 1 iQ~Ai~~A~~---GDtI~l~~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~-----~~~--~i-~v~a~~VtI~~ 69 (314)
T TIGR03805 1 LQEALIAAQP---GDTIVLPEGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVG-----GAE--GL-LVTSDDVTLSD 69 (314)
T ss_pred CHhHHhhCCC---CCEEEECCCEEEcceeEEEeCCCeEEEecCCCccEEecccCCC-----CCc--eE-EEEeCCeEEEe
Confidence 6999999988 9999999999976 688886 8999998754 5666543210 011 12 23578888888
Q ss_pred ccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEe-------CCCCcEEEEeeeecEE
Q 038762 110 GGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLR-------EPAYWCLHIVRCDNTF 182 (268)
Q Consensus 110 ~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~-------n~~~~~i~~~~~~nv~ 182 (268)
- ++... ...++.+..|++++|+++++. ....+|+.+..|++++
T Consensus 70 l-tI~~~-----------------------------~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~ 119 (314)
T TIGR03805 70 L-AVENT-----------------------------KGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVL 119 (314)
T ss_pred e-EEEcC-----------------------------CCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEE
Confidence 3 33221 123677888999999999886 1346789999999999
Q ss_pred EEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecCCCCCeecEEEEceEEecCCccEEe
Q 038762 183 IRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIKL 250 (268)
Q Consensus 183 i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~~~gi~i 250 (268)
|+++.+.. ....||.+..|++++|++|+++....||.+.. +.++.|++|++..+..|+.+
T Consensus 120 I~~n~i~g----~~d~GIyv~~s~~~~v~nN~~~~n~~GI~i~~----S~~~~v~~N~~~~N~~Gi~v 179 (314)
T TIGR03805 120 VEDSYVRG----ASDAGIYVGQSQNIVVRNNVAEENVAGIEIEN----SQNADVYNNIATNNTGGILV 179 (314)
T ss_pred EECCEEEC----CCcccEEECCCCCeEEECCEEccCcceEEEEe----cCCcEEECCEEeccceeEEE
Confidence 99999986 23358999888899999999988777888865 58889999999888888877
No 12
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.77 E-value=7.1e-17 Score=144.09 Aligned_cols=194 Identities=20% Similarity=0.334 Sum_probs=119.5
Q ss_pred CcEEEECCCeEEEee---EEecCc-eEEEEcCCeeEEeCCCCCCCCCCCCceEEEEEEeeeccEEEeccEEecCCccccc
Q 038762 47 PCQVRFPPGEYLTAT---IRLKSH-VTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVV 122 (268)
Q Consensus 47 g~~v~ip~G~Y~~~~---l~l~s~-~~l~~~~ga~l~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~ 122 (268)
..+|||+||+|.++. +.|+++ .++++++||.++++ +.+ ....+|+.|.|.|++.|....|-+
T Consensus 232 ~~~lYF~PGVy~ig~~~~l~L~sn~~~VYlApGAyVkGA-------------f~~-~~~~~nv~i~G~GVLSGe~Yvy~A 297 (582)
T PF03718_consen 232 KDTLYFKPGVYWIGSDYHLRLPSNTKWVYLAPGAYVKGA-------------FEY-TDTQQNVKITGRGVLSGEQYVYEA 297 (582)
T ss_dssp SSEEEE-SEEEEEBCTC-EEE-TT--EEEE-TTEEEES--------------EEE----SSEEEEESSSEEE-TTS-TTB
T ss_pred cceEEeCCceEEeCCCccEEECCCccEEEEcCCcEEEEE-------------EEE-ccCCceEEEEeeEEEcCcceeEec
Confidence 469999999998875 899988 59999999999984 222 268999999999999998776633
Q ss_pred chhhcccceecccccCCCCCCCCCceEEE---EeccccEEEEeEEEeCCCCcEEEEeeee----cEEEEeEEEEcCCCCC
Q 038762 123 TKNEIKNVMVSWNHTGACSGDECRPRLVG---FLGCRNVNVWNVRLREPAYWCLHIVRCD----NTFIRDMSIYGDFNTP 195 (268)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~~~nv~I~~v~i~n~~~~~i~~~~~~----nv~i~~~~i~~~~~~~ 195 (268)
....... +....-.|.. ..-+++. ...+.++.+++++|.++|.|.+.+...+ +.+|+|.++-..+ -.
T Consensus 298 ~~~e~y~---~~s~A~~~~~--~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW-~~ 371 (582)
T PF03718_consen 298 DTEESYL---HLSGAVKCHR--ESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAW-YF 371 (582)
T ss_dssp BCCCTTS---B-SSC---TT--TB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE----CT
T ss_pred cCCCCcc---ccccccccch--hhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeeeE-Ee
Confidence 2221100 0000000110 1112343 4556799999999999999999999655 4899999998654 36
Q ss_pred CCceeeecCcccEEEEeeEEecCCceeeecCCCCCeecEEEEceEEecCCcc--EEeeeeeeeeEEeEEEEeeEC
Q 038762 196 NNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSA--IKLGSASWFDFKALVFDNITI 268 (268)
Q Consensus 196 ~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~~~g--i~ig~~~~~~~~ni~~~ni~i 268 (268)
++|||.+. ++-+|+||++...||+|.+.- +++.++||+++...+| +.+|+-.. .++|+.|+|++|
T Consensus 372 qtDGi~ly--~nS~i~dcF~h~nDD~iKlYh-----S~v~v~~~ViWk~~Ngpiiq~GW~pr-~isnv~veni~I 438 (582)
T PF03718_consen 372 QTDGIELY--PNSTIRDCFIHVNDDAIKLYH-----SNVSVSNTVIWKNENGPIIQWGWTPR-NISNVSVENIDI 438 (582)
T ss_dssp T----B----TT-EEEEEEEEESS-SEE--S-----TTEEEEEEEEEE-SSS-SEE--CS----EEEEEEEEEEE
T ss_pred ccCCcccc--CCCeeeeeEEEecCchhheee-----cCcceeeeEEEecCCCCeEEeecccc-ccCceEEeeeEE
Confidence 89999985 577889999999999996653 8999999999987777 67788643 588999999875
No 13
>PLN02793 Probable polygalacturonase
Probab=99.69 E-value=5.3e-15 Score=133.85 Aligned_cols=163 Identities=17% Similarity=0.284 Sum_probs=126.2
Q ss_pred CceEEEEcCCeeEEeCCCCCCCCCC----------CCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceeccc
Q 038762 66 SHVTLNIHEDATLLGGPRIEDYPEE----------SSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWN 135 (268)
Q Consensus 66 s~~~l~~~~ga~l~~~~~~~~~~~~----------~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~ 135 (268)
+++++.+. ++|.+.+ ..|... ..+..++.+.+++|++|+|--..+.
T Consensus 143 ~ni~ItG~--G~IDG~G--~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nS-------------------- 198 (443)
T PLN02793 143 NHLTVEGG--GTVNGMG--HEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDS-------------------- 198 (443)
T ss_pred ceEEEEec--eEEECCC--cccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcC--------------------
Confidence 45666664 7887744 233211 0123467889999999999322221
Q ss_pred ccCCCCCCCCCceEEEEeccccEEEEeEEEeCCC----CcEEEEeeeecEEEEeEEEEcCCCCCCCceeeec-CcccEEE
Q 038762 136 HTGACSGDECRPRLVGFLGCRNVNVWNVRLREPA----YWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIE-DSNNTVI 210 (268)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~----~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~-~~~~v~I 210 (268)
....+++.+|+|++|+++++.++. ..||++..|+||+|+|+.|.. ..|.|-+. +|++|+|
T Consensus 199 ----------p~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~-----gDDcIaik~~s~nI~I 263 (443)
T PLN02793 199 ----------QQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRT-----GDDCISIVGNSSRIKI 263 (443)
T ss_pred ----------CCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeC-----CCCeEEecCCcCCEEE
Confidence 133688999999999999998742 459999999999999999997 78999996 7889999
Q ss_pred EeeEEecCCceeeecCC-----CCCeecEEEEceEEecCCccEEeeee--eeeeEEeEEEEeeEC
Q 038762 211 TRVQIDTGDDAICPKTY-----TGPLYNLTATDSWIRTKSSAIKLGSA--SWFDFKALVFDNITI 268 (268)
Q Consensus 211 ~n~~i~~gDD~i~i~s~-----~~~~~nv~v~n~~~~~~~~gi~ig~~--~~~~~~ni~~~ni~i 268 (268)
+||....|. +|+++|. .+.++||+|+||++.++.+|++|.+. .++.++||+|+|++|
T Consensus 264 ~n~~c~~Gh-GisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m 327 (443)
T PLN02793 264 RNIACGPGH-GISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFM 327 (443)
T ss_pred EEeEEeCCc-cEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEE
Confidence 999997775 6999984 25799999999999999999999663 345788888888876
No 14
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.68 E-value=4.4e-15 Score=133.63 Aligned_cols=163 Identities=15% Similarity=0.200 Sum_probs=126.1
Q ss_pred CceEEEEcCCeeEEeCCCCCCCCC-CCCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCC
Q 038762 66 SHVTLNIHEDATLLGGPRIEDYPE-ESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDE 144 (268)
Q Consensus 66 s~~~l~~~~ga~l~~~~~~~~~~~-~~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (268)
.++++.+. ++|.+.+ ..|.. ...+..++.+.+++|+.|+|- ++. ..
T Consensus 113 ~~i~I~G~--GtIDGqG--~~wW~~~~~rP~~l~f~~~~nv~I~gi-tl~--NS-------------------------- 159 (456)
T PLN03003 113 EGLVIEGD--GEINGQG--SSWWEHKGSRPTALKFRSCNNLRLSGL-THL--DS-------------------------- 159 (456)
T ss_pred cceEEecc--ceEeCCc--hhhhhcccCCceEEEEEecCCcEEeCe-EEe--cC--------------------------
Confidence 36666664 6777644 23332 122335778899999999993 221 11
Q ss_pred CCceEEEEeccccEEEEeEEEeCCC----CcEEEEeeeecEEEEeEEEEcCCCCCCCceeeec-CcccEEEEeeEEecCC
Q 038762 145 CRPRLVGFLGCRNVNVWNVRLREPA----YWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIE-DSNNTVITRVQIDTGD 219 (268)
Q Consensus 145 ~~~~~i~~~~~~nv~I~~v~i~n~~----~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~-~~~~v~I~n~~i~~gD 219 (268)
....+++.+|+|++|+++++.++. ..|+++..|+||+|+|+.|.. ..|.|-+. +|+||+|+||....+.
T Consensus 160 -p~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~t-----GDDCIaiksgs~NI~I~n~~c~~GH 233 (456)
T PLN03003 160 -PMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIAT-----GDDCIAINSGTSNIHISGIDCGPGH 233 (456)
T ss_pred -CcEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEec-----CCCeEEeCCCCccEEEEeeEEECCC
Confidence 234699999999999999998642 449999999999999999997 78999997 6779999999997765
Q ss_pred ceeeecCCC-----CCeecEEEEceEEecCCccEEeeee--eeeeEEeEEEEeeEC
Q 038762 220 DAICPKTYT-----GPLYNLTATDSWIRTKSSAIKLGSA--SWFDFKALVFDNITI 268 (268)
Q Consensus 220 D~i~i~s~~-----~~~~nv~v~n~~~~~~~~gi~ig~~--~~~~~~ni~~~ni~i 268 (268)
+|+++|.. ..++||+|+||++.++.+|++|.+. ..+.++||+|+|++|
T Consensus 234 -GISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~Gg~G~v~nItf~nI~m 288 (456)
T PLN03003 234 -GISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITL 288 (456)
T ss_pred -CeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCCCCeEEEEEEEEeEEe
Confidence 79999854 3599999999999999999999653 335788888888876
No 15
>PLN02218 polygalacturonase ADPG
Probab=99.68 E-value=3.6e-15 Score=134.33 Aligned_cols=164 Identities=17% Similarity=0.207 Sum_probs=125.3
Q ss_pred ceEEEEcCCeeEEeCCCCCCCCCC----------CCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccc
Q 038762 67 HVTLNIHEDATLLGGPRIEDYPEE----------SSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNH 136 (268)
Q Consensus 67 ~~~l~~~~ga~l~~~~~~~~~~~~----------~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~ 136 (268)
++++.+...++|.+.+ ..|... ..+..++.+.+++|++|+|- ++.. .
T Consensus 157 ni~I~G~~~GtIDG~G--~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gi-tl~n--S------------------ 213 (431)
T PLN02218 157 NLSVDGGSTGVVDGNG--ETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNL-RVRN--A------------------ 213 (431)
T ss_pred EEEEECCCCcEEeCCc--hhhhhcccccCCcCccCcCCEEEEEEccccEEEeCe-EEEc--C------------------
Confidence 5555443227787654 233321 01234678899999999993 3221 1
Q ss_pred cCCCCCCCCCceEEEEeccccEEEEeEEEeCC----CCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeec-CcccEEEE
Q 038762 137 TGACSGDECRPRLVGFLGCRNVNVWNVRLREP----AYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIE-DSNNTVIT 211 (268)
Q Consensus 137 ~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~----~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~-~~~~v~I~ 211 (268)
..+.+++.+|+||+|+|+++.++ -..||++..|+||+|+|+.|.. ..|.|-+. ++++|+|+
T Consensus 214 ---------p~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~t-----GDDcIaIksgs~nI~I~ 279 (431)
T PLN02218 214 ---------QQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGT-----GDDCISIESGSQNVQIN 279 (431)
T ss_pred ---------CCEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEec-----CCceEEecCCCceEEEE
Confidence 23469999999999999999863 2449999999999999999997 78999997 67899999
Q ss_pred eeEEecCCceeeecCCC-----CCeecEEEEceEEecCCccEEeeee--eeeeEEeEEEEeeEC
Q 038762 212 RVQIDTGDDAICPKTYT-----GPLYNLTATDSWIRTKSSAIKLGSA--SWFDFKALVFDNITI 268 (268)
Q Consensus 212 n~~i~~gDD~i~i~s~~-----~~~~nv~v~n~~~~~~~~gi~ig~~--~~~~~~ni~~~ni~i 268 (268)
||.+..+. +|+++|.. +.++||+|+||++.++.+|++|.+. .++.++||+|+|++|
T Consensus 280 n~~c~~GH-GisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg~G~v~nI~f~ni~m 342 (431)
T PLN02218 280 DITCGPGH-GISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQM 342 (431)
T ss_pred eEEEECCC-CEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCCCCeEEEEEEEEeEEE
Confidence 99997665 69999854 4699999999999999999988664 346888888888876
No 16
>PLN02155 polygalacturonase
Probab=99.65 E-value=6.6e-15 Score=131.21 Aligned_cols=137 Identities=20% Similarity=0.265 Sum_probs=114.6
Q ss_pred EEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCC----Cc
Q 038762 96 VVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPA----YW 171 (268)
Q Consensus 96 ~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~----~~ 171 (268)
++.+.+++++.|+|- ++. .. ....+++.+|+|++|+++++.++. ..
T Consensus 147 ~i~~~~~~nv~i~gi-tl~--nS---------------------------p~w~i~~~~~~nv~i~~v~I~~p~~~~NtD 196 (394)
T PLN02155 147 SISFNSAKDVIISGV-KSM--NS---------------------------QVSHMTLNGCTNVVVRNVKLVAPGNSPNTD 196 (394)
T ss_pred ceeEEEeeeEEEECe-EEE--cC---------------------------CCeEEEEECeeeEEEEEEEEECCCCCCCCC
Confidence 577889999999982 221 11 234799999999999999998743 35
Q ss_pred EEEEeeeecEEEEeEEEEcCCCCCCCceeeec-CcccEEEEeeEEecCCceeeecCC-----CCCeecEEEEceEEecCC
Q 038762 172 CLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIE-DSNNTVITRVQIDTGDDAICPKTY-----TGPLYNLTATDSWIRTKS 245 (268)
Q Consensus 172 ~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~-~~~~v~I~n~~i~~gDD~i~i~s~-----~~~~~nv~v~n~~~~~~~ 245 (268)
|+.+..|+||+|+|+.|.. ..|.|-+. +|++|+|+||.+..|. +++++|. .+.++||+|+||++.++.
T Consensus 197 Gidi~~s~nV~I~~~~I~~-----gDDcIaik~gs~nI~I~n~~c~~Gh-GisIGS~g~~~~~~~V~nV~v~n~~~~~t~ 270 (394)
T PLN02155 197 GFHVQFSTGVTFTGSTVQT-----GDDCVAIGPGTRNFLITKLACGPGH-GVSIGSLAKELNEDGVENVTVSSSVFTGSQ 270 (394)
T ss_pred ccccccceeEEEEeeEEec-----CCceEEcCCCCceEEEEEEEEECCc-eEEeccccccCCCCcEEEEEEEeeEEeCCC
Confidence 9999999999999999997 78999987 5779999999998765 6999994 467999999999999999
Q ss_pred ccEEeee---eeeeeEEeEEEEeeEC
Q 038762 246 SAIKLGS---ASWFDFKALVFDNITI 268 (268)
Q Consensus 246 ~gi~ig~---~~~~~~~ni~~~ni~i 268 (268)
+|++|.+ ..++.++||+|+|++|
T Consensus 271 ~GirIKT~~~~~gG~v~nI~f~ni~m 296 (394)
T PLN02155 271 NGVRIKSWARPSTGFVRNVFFQDLVM 296 (394)
T ss_pred cEEEEEEecCCCCEEEEEEEEEeEEE
Confidence 9999966 2467899999999886
No 17
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.64 E-value=4.7e-14 Score=126.29 Aligned_cols=163 Identities=20% Similarity=0.226 Sum_probs=125.4
Q ss_pred CceEEEEcCCeeEEeCCCCCCCCC-C--------CCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccc
Q 038762 66 SHVTLNIHEDATLLGGPRIEDYPE-E--------SSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNH 136 (268)
Q Consensus 66 s~~~l~~~~ga~l~~~~~~~~~~~-~--------~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~ 136 (268)
.++++.+ +++|.+.+. .|.. . ..+..++.+..++|+.|+|- ++. ..
T Consensus 122 ~ni~I~G--~G~IDG~G~--~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gi-tl~--nS------------------ 176 (404)
T PLN02188 122 NGLTLTG--GGTFDGQGA--AAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGI-TSV--NS------------------ 176 (404)
T ss_pred eeEEEEe--eEEEeCCCc--ccccccccccCCCCCcCceEEEEEeeeeEEEeCe-EEE--cC------------------
Confidence 4666666 478887553 2321 1 11234677899999999993 222 11
Q ss_pred cCCCCCCCCCceEEEEeccccEEEEeEEEeCCC----CcEEEEeeeecEEEEeEEEEcCCCCCCCceeeec-CcccEEEE
Q 038762 137 TGACSGDECRPRLVGFLGCRNVNVWNVRLREPA----YWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIE-DSNNTVIT 211 (268)
Q Consensus 137 ~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~----~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~-~~~~v~I~ 211 (268)
....+++.+|+|++|+++++.++. ..|+++..|+|++|+|+.|.. ..|.|-+. ++++|+|+
T Consensus 177 ---------p~w~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~-----GDDcIaiksg~~nI~I~ 242 (404)
T PLN02188 177 ---------KFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGT-----GDDCISIGQGNSQVTIT 242 (404)
T ss_pred ---------CCeEEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeC-----CCcEEEEccCCccEEEE
Confidence 234699999999999999998632 449999999999999999997 78999996 67799999
Q ss_pred eeEEecCCceeeecC----C-CCCeecEEEEceEEecCCccEEeeee----eeeeEEeEEEEeeEC
Q 038762 212 RVQIDTGDDAICPKT----Y-TGPLYNLTATDSWIRTKSSAIKLGSA----SWFDFKALVFDNITI 268 (268)
Q Consensus 212 n~~i~~gDD~i~i~s----~-~~~~~nv~v~n~~~~~~~~gi~ig~~----~~~~~~ni~~~ni~i 268 (268)
|+....+. +|+++| . .+.++||+|+||++.++.+|++|.+. ..+.++||+|+|++|
T Consensus 243 n~~c~~gh-GisiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m 307 (404)
T PLN02188 243 RIRCGPGH-GISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVM 307 (404)
T ss_pred EEEEcCCC-cEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEe
Confidence 99997764 699988 2 36799999999999999999998552 346788888888876
No 18
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.62 E-value=2.2e-14 Score=126.06 Aligned_cols=161 Identities=20% Similarity=0.257 Sum_probs=120.4
Q ss_pred EEEcCCeeEEeCCCCCCCCCCC--------CceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCC
Q 038762 70 LNIHEDATLLGGPRIEDYPEES--------SRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACS 141 (268)
Q Consensus 70 l~~~~ga~l~~~~~~~~~~~~~--------~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 141 (268)
+.+.+.++|.+.+. .|.... .+..++.+..+++++|+|- ++. ..
T Consensus 62 i~i~G~G~IDG~G~--~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i-~~~--ns----------------------- 113 (326)
T PF00295_consen 62 ITITGKGTIDGNGQ--AWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGI-TIR--NS----------------------- 113 (326)
T ss_dssp EECTTSSEEE--GG--GTCSSCTTHCCSSSSSSESEEEEEEEEEEEESE-EEE--S------------------------
T ss_pred EEecCCceEcCchh--hhhccccccccccccccceeeeeeecceEEEee-Eec--CC-----------------------
Confidence 44444477777443 232211 2235677899999999993 221 11
Q ss_pred CCCCCceEEEEeccccEEEEeEEEeCCC----CcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcc-cEEEEeeEEe
Q 038762 142 GDECRPRLVGFLGCRNVNVWNVRLREPA----YWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSN-NTVITRVQID 216 (268)
Q Consensus 142 ~~~~~~~~i~~~~~~nv~I~~v~i~n~~----~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~-~v~I~n~~i~ 216 (268)
..+.+++.+|+|++|+++++.++. ..|+.+..|+|++|+|+.|.+ ..|.|.+.+.+ +|+|+||.+.
T Consensus 114 ----p~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~-----gDD~Iaiks~~~ni~v~n~~~~ 184 (326)
T PF00295_consen 114 ----PFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCFIDN-----GDDCIAIKSGSGNILVENCTCS 184 (326)
T ss_dssp ----SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEEEES-----SSESEEESSEECEEEEESEEEE
T ss_pred ----CeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEeeccc-----ccCcccccccccceEEEeEEEe
Confidence 223588999999999999998754 349999999999999999997 79999998666 9999999998
Q ss_pred cCCceeeecCCCC-----CeecEEEEceEEecCCccEEeeee--eeeeEEeEEEEeeEC
Q 038762 217 TGDDAICPKTYTG-----PLYNLTATDSWIRTKSSAIKLGSA--SWFDFKALVFDNITI 268 (268)
Q Consensus 217 ~gDD~i~i~s~~~-----~~~nv~v~n~~~~~~~~gi~ig~~--~~~~~~ni~~~ni~i 268 (268)
.+. +++++|... .++||+|+||++.++.+|++|.+. ..+.++||+|+|++|
T Consensus 185 ~gh-GisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~~~G~v~nI~f~ni~~ 242 (326)
T PF00295_consen 185 GGH-GISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPGGGGYVSNITFENITM 242 (326)
T ss_dssp SSS-EEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETTTSEEEEEEEEEEEEE
T ss_pred ccc-cceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEecccceEEeceEEEEEEe
Confidence 754 599988543 389999999999999999988663 456888888888875
No 19
>PLN03010 polygalacturonase
Probab=99.61 E-value=1e-13 Score=123.90 Aligned_cols=162 Identities=14% Similarity=0.193 Sum_probs=120.3
Q ss_pred CceEEEEcCCeeEEeCCCCCCCCCCCCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCC
Q 038762 66 SHVTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDEC 145 (268)
Q Consensus 66 s~~~l~~~~ga~l~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (268)
+++++.+. ++|.+.+ ..| |.++.+.+++|++|+|- ++.. .
T Consensus 139 ~nv~I~G~--G~IDG~G--~~w------w~~l~~~~~~nv~v~gi-tl~n--s--------------------------- 178 (409)
T PLN03010 139 SGLMIDGS--GTIDGRG--SSF------WEALHISKCDNLTINGI-TSID--S--------------------------- 178 (409)
T ss_pred cccEEeec--eEEeCCC--ccc------cceEEEEeecCeEEeee-EEEc--C---------------------------
Confidence 46666664 6777643 223 34677899999999993 2211 1
Q ss_pred CceEEEEeccccEEEEeEEEeCCC----CcEEEEeeeecEEEEeEEEEcCCCC----C-------------CCceeeecC
Q 038762 146 RPRLVGFLGCRNVNVWNVRLREPA----YWCLHIVRCDNTFIRDMSIYGDFNT----P-------------NNDGIDIED 204 (268)
Q Consensus 146 ~~~~i~~~~~~nv~I~~v~i~n~~----~~~i~~~~~~nv~i~~~~i~~~~~~----~-------------~~DGi~~~~ 204 (268)
....+++.+|+|++|+++++.++. ..|+++..|++|+|+|+.|.+.++. . .+.||.+.+
T Consensus 179 p~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS 258 (409)
T PLN03010 179 PKNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGS 258 (409)
T ss_pred CceEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEcc
Confidence 234688999999999999998743 3489999999999999999864430 0 223444432
Q ss_pred ---------cccEEEEeeEEecCCceeeecCCC---CCeecEEEEceEEecCCccEEeeeeee------------eeEEe
Q 038762 205 ---------SNNTVITRVQIDTGDDAICPKTYT---GPLYNLTATDSWIRTKSSAIKLGSASW------------FDFKA 260 (268)
Q Consensus 205 ---------~~~v~I~n~~i~~gDD~i~i~s~~---~~~~nv~v~n~~~~~~~~gi~ig~~~~------------~~~~n 260 (268)
-+||+|+||+|...+.++.+|+.. +.++||+++|.++.+..++|.|-..+. ..|+|
T Consensus 259 ~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isd 338 (409)
T PLN03010 259 LGADGANAKVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISN 338 (409)
T ss_pred CCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecCCCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEe
Confidence 368999999999988999999853 479999999999999989988744221 27899
Q ss_pred EEEEeeE
Q 038762 261 LVFDNIT 267 (268)
Q Consensus 261 i~~~ni~ 267 (268)
|+|+|++
T Consensus 339 i~~~ni~ 345 (409)
T PLN03010 339 VKYVGFR 345 (409)
T ss_pred EEEEeeE
Confidence 9999986
No 20
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.41 E-value=4.4e-12 Score=116.04 Aligned_cols=144 Identities=16% Similarity=0.227 Sum_probs=113.5
Q ss_pred EEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCC---Cc
Q 038762 95 YVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPA---YW 171 (268)
Q Consensus 95 ~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~---~~ 171 (268)
..+.+..|+||.+.|..+... .-+.+++..|+|++++|+++.+.. ..
T Consensus 239 ~~~~l~~c~NV~~~g~~i~ns------------------------------~~~~~h~~~~~nl~~~nl~I~~~~~~NtD 288 (542)
T COG5434 239 RTVVLKGCRNVLLEGLNIKNS------------------------------PLWTVHPVDCDNLTFRNLTIDANRFDNTD 288 (542)
T ss_pred ceEEEeccceEEEeeeEecCC------------------------------CcEEEeeecccCceecceEEECCCCCCCC
Confidence 355678999999988433221 124799999999999999998643 45
Q ss_pred EEEEeeeecEEEEeEEEEcCCC------CCCCce-eeecCcccEEEEeeEEecCCceeeecCC-CCCeecEEEEceEEec
Q 038762 172 CLHIVRCDNTFIRDMSIYGDFN------TPNNDG-IDIEDSNNTVITRVQIDTGDDAICPKTY-TGPLYNLTATDSWIRT 243 (268)
Q Consensus 172 ~i~~~~~~nv~i~~~~i~~~~~------~~~~DG-i~~~~~~~v~I~n~~i~~gDD~i~i~s~-~~~~~nv~v~n~~~~~ 243 (268)
|+.+..|+|+.|++|+|..-.+ +...++ =....++++.|+||.|..+.-++.++++ .+.++||++|||.+.+
T Consensus 289 G~d~~sc~NvlI~~~~fdtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~ 368 (542)
T COG5434 289 GFDPGSCSNVLIEGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDN 368 (542)
T ss_pred ccccccceeEEEeccEEecCCceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeecc
Confidence 9999999999999999987322 112221 1223478899999999999989999886 4789999999999999
Q ss_pred CCccEEeee--eeeeeEEeEEEEeeEC
Q 038762 244 KSSAIKLGS--ASWFDFKALVFDNITI 268 (268)
Q Consensus 244 ~~~gi~ig~--~~~~~~~ni~~~ni~i 268 (268)
+..|++|.+ ..+++++||+|++++|
T Consensus 369 ~d~GLRikt~~~~gG~v~nI~~~~~~~ 395 (542)
T COG5434 369 TDRGLRIKTNDGRGGGVRNIVFEDNKM 395 (542)
T ss_pred CcceeeeeeecccceeEEEEEEecccc
Confidence 999999976 4567999999999875
No 21
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.97 E-value=9.5e-08 Score=79.79 Aligned_cols=163 Identities=23% Similarity=0.320 Sum_probs=106.5
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEECCCeEEEe-----eEEecCceEEEEcCCeeEEeCCCCCCCCCCCCceEEEEEEeeec
Q 038762 30 DTAAIQSAIDACPPGNKPCQVRFPPGEYLTA-----TIRLKSHVTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATD 104 (268)
Q Consensus 30 ~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~-----~l~l~s~~~l~~~~ga~l~~~~~~~~~~~~~~~~~~i~~~~~~n 104 (268)
--+-|++|++.+++ |.+|++-||+|... +|.++++++|.+++-. ++ ...
T Consensus 14 P~~Ti~~A~~~a~~---g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~--kG---------------------~~~ 67 (246)
T PF07602_consen 14 PFKTITKALQAAQP---GDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESN--KG---------------------QID 67 (246)
T ss_pred CHHHHHHHHHhCCC---CCEEEECCceeccccCCcccEEecCCeEEeecccC--CC---------------------cce
Confidence 45689999999988 88999999999532 4677777777765211 00 011
Q ss_pred cEEEecc---EEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCC---CCcEEEEeee
Q 038762 105 VGITGGG---VVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREP---AYWCLHIVRC 178 (268)
Q Consensus 105 v~I~G~G---~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~---~~~~i~~~~~ 178 (268)
+.+.|.+ +|+|.+... ..+.+.+....+..|+++++.|+ .+.++.+..+
T Consensus 68 il~~g~~~~~~I~g~~~~~-------------------------~~qn~tI~~~~~~~i~GvtItN~n~~~g~Gi~Iess 122 (246)
T PF07602_consen 68 ILITGGGTGPTISGGGPDL-------------------------SGQNVTIILANNATISGVTITNPNIARGTGIWIESS 122 (246)
T ss_pred EEecCCceEEeEeccCccc-------------------------cceeEEEEecCCCEEEEEEEEcCCCCcceEEEEecC
Confidence 1122211 133322210 12345566678889999999987 5668888777
Q ss_pred ecEEEEeEEEEcCCCCCCCceeeecCcc------cEEEEeeEEecCCceeeecCCCCCeecEEEEceEEecCCccEE
Q 038762 179 DNTFIRDMSIYGDFNTPNNDGIDIEDSN------NTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIK 249 (268)
Q Consensus 179 ~nv~i~~~~i~~~~~~~~~DGi~~~~~~------~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~~~gi~ 249 (268)
+.+|+++++.. ...+||.+.+.. ++.|++..+....-+|++.....++.| .|+||.++.+..||.
T Consensus 123 -~~tI~Nntf~~----~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~Gi~i~~~~~~~~n-~I~NN~I~~N~~Gi~ 193 (246)
T PF07602_consen 123 -SPTIANNTFTN----NGREGIFVTGTSANPGINGNVISGNSIYFNKTGISISDNAAPVEN-KIENNIIENNNIGIV 193 (246)
T ss_pred -CcEEEeeEEEC----CccccEEEEeeecCCcccceEeecceEEecCcCeEEEcccCCccc-eeeccEEEeCCcCeE
Confidence 99999999987 357888775442 456666666665557777655445443 568888887767875
No 22
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.92 E-value=5.1e-08 Score=85.23 Aligned_cols=113 Identities=12% Similarity=0.099 Sum_probs=93.1
Q ss_pred EEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCC---CCCCceeeecCcccEEEEeeEEec-CCceeee
Q 038762 149 LVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFN---TPNNDGIDIEDSNNTVITRVQIDT-GDDAICP 224 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~---~~~~DGi~~~~~~~v~I~n~~i~~-gDD~i~i 224 (268)
.+. ..+++++|++++++++..+++.+..|++++|+++++..... ....+||.++.|++++|++|.++. .|++|.+
T Consensus 57 ~i~-v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv 135 (314)
T TIGR03805 57 GLL-VTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYV 135 (314)
T ss_pred eEE-EEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEE
Confidence 443 35899999999999999999999999999999999973221 236789999999999999999998 6668988
Q ss_pred cCCCCCeecEEEEceEEecCCccEEeeeeeeeeEEeEEEEee
Q 038762 225 KTYTGPLYNLTATDSWIRTKSSAIKLGSASWFDFKALVFDNI 266 (268)
Q Consensus 225 ~s~~~~~~nv~v~n~~~~~~~~gi~ig~~~~~~~~ni~~~ni 266 (268)
+. ++++.|++|+++....||.+-......++|.++.+.
T Consensus 136 ~~----s~~~~v~nN~~~~n~~GI~i~~S~~~~v~~N~~~~N 173 (314)
T TIGR03805 136 GQ----SQNIVVRNNVAEENVAGIEIENSQNADVYNNIATNN 173 (314)
T ss_pred CC----CCCeEEECCEEccCcceEEEEecCCcEEECCEEecc
Confidence 76 799999999999988899886555556666555553
No 23
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.80 E-value=2.5e-08 Score=82.46 Aligned_cols=108 Identities=23% Similarity=0.334 Sum_probs=69.5
Q ss_pred EEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCC-----CCcee------eecCcccEEEEeeEEecCC
Q 038762 151 GFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTP-----NNDGI------DIEDSNNTVITRVQIDTGD 219 (268)
Q Consensus 151 ~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~-----~~DGi------~~~~~~~v~I~n~~i~~gD 219 (268)
.|++|+++.++|++|-+++-. +..|++++++|+.+.+..-.. .-|++ -|++|+||.|+|+++.+.|
T Consensus 93 ~fR~~~~i~L~nv~~~~A~Et---~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKD 169 (277)
T PF12541_consen 93 MFRECSNITLENVDIPDADET---LWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKD 169 (277)
T ss_pred HhhcccCcEEEeeEeCCCccc---CEEeCCeEEEeEEEeceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEeccc
Confidence 367899999999999888653 567888888888885432111 23333 3456999999999999887
Q ss_pred ceeeecCCCCCeecEEEEceEEecC-----CccEEe------eeeeeeeEEeEEEEeeEC
Q 038762 220 DAICPKTYTGPLYNLTATDSWIRTK-----SSAIKL------GSASWFDFKALVFDNITI 268 (268)
Q Consensus 220 D~i~i~s~~~~~~nv~v~n~~~~~~-----~~gi~i------g~~~~~~~~ni~~~ni~i 268 (268)
--. .++||+|+|+++.+- ...+.+ |...--+.+|++++||+|
T Consensus 170 AFW-------n~eNVtVyDS~i~GEYLgW~SkNltliNC~I~g~QpLCY~~~L~l~nC~~ 222 (277)
T PF12541_consen 170 AFW-------NCENVTVYDSVINGEYLGWNSKNLTLINCTIEGTQPLCYCDNLVLENCTM 222 (277)
T ss_pred ccc-------cCCceEEEcceEeeeEEEEEcCCeEEEEeEEeccCccEeecceEEeCcEe
Confidence 333 267777777776431 111111 122333667777777764
No 24
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.75 E-value=3e-07 Score=71.66 Aligned_cols=95 Identities=22% Similarity=0.221 Sum_probs=40.5
Q ss_pred EEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecC-cccEEEEeeEEec-CCceeeecC
Q 038762 149 LVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIED-SNNTVITRVQIDT-GDDAICPKT 226 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~-~~~v~I~n~~i~~-gDD~i~i~s 226 (268)
++.+....++.++++++.+.. .++.+..+..++|+++.+.. ....||.+.. +++++|++|+|.. +..++.+..
T Consensus 47 gi~~~~~~~~~i~~~~~~~~~-~~i~~~~~~~~~i~~~~i~~----~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~ 121 (158)
T PF13229_consen 47 GIYVSGGSNVTISNNTISDNG-SGIYVSGSSNITIENNRIEN----NGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEG 121 (158)
T ss_dssp SEEEECCES-EEES-EEES-S-EEEECCS-CS-EEES-EEEC----SSS-SCE-TCEECS-EEES-EEECCTTSSCEEEE
T ss_pred EEEEecCCCeEEECeEEEEcc-ceEEEEecCCceecCcEEEc----CCCccEEEeccCCCEEEEeEEEEeCcceeEEEEC
Confidence 344444555555555555544 45555555555555555554 1222555554 5555555555554 334444443
Q ss_pred CCCCeecEEEEceEEecCC-ccEEe
Q 038762 227 YTGPLYNLTATDSWIRTKS-SAIKL 250 (268)
Q Consensus 227 ~~~~~~nv~v~n~~~~~~~-~gi~i 250 (268)
.. ..++.|++|++.... .|+.+
T Consensus 122 ~~--~~~~~i~~n~i~~~~~~gi~~ 144 (158)
T PF13229_consen 122 GS--SPNVTIENNTISNNGGNGIYL 144 (158)
T ss_dssp CC----S-EEECEEEECESSEEEE-
T ss_pred CC--CCeEEEEEEEEEeCcceeEEE
Confidence 11 235555666655432 44444
No 25
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=98.73 E-value=3.8e-07 Score=77.93 Aligned_cols=162 Identities=17% Similarity=0.163 Sum_probs=116.5
Q ss_pred CCCcEEEECCCeEEEeeEEecCceEEEEcCCeeEEeCCCCCCCCCCCCceEEEEEEeeeccEEEeccEEecCCcccccch
Q 038762 45 NKPCQVRFPPGEYLTATIRLKSHVTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTK 124 (268)
Q Consensus 45 ~~g~~v~ip~G~Y~~~~l~l~s~~~l~~~~ga~l~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~ 124 (268)
++|..+.+. |+| .+.+.+...+||+.++||+|.+.... ... -...+++.++| -+..+.|......
T Consensus 32 ~pgd~~~i~-g~~-~g~~vInr~l~l~ge~ga~l~g~g~G--------~~v---tv~aP~~~v~G-l~vr~sg~~lp~m- 96 (408)
T COG3420 32 KPGDYYGIS-GRY-AGNFVINRALTLRGENGAVLDGGGKG--------SYV---TVAAPDVIVEG-LTVRGSGRSLPAM- 96 (408)
T ss_pred CCCcEEEEe-eee-cccEEEccceeeccccccEEecCCcc--------cEE---EEeCCCceeee-EEEecCCCCcccc-
Confidence 346677777 777 56778888899999999999885432 111 24678888888 4555555542210
Q ss_pred hhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCC---CCCCceee
Q 038762 125 NEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFN---TPNNDGID 201 (268)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~---~~~~DGi~ 201 (268)
..-.+..+......|++..+... .+|+.+..+.++.+++.+|....+ .-.++||+
T Consensus 97 ---------------------~agI~v~~~at~A~Vr~N~l~~n-~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~ 154 (408)
T COG3420 97 ---------------------DAGIFVGRTATGAVVRHNDLIGN-SFGIYLHGSADVRIEGNTIQGLADLRVAERGNGIY 154 (408)
T ss_pred ---------------------cceEEeccCcccceEEccccccc-ceEEEEeccCceEEEeeEEeeccccchhhccCceE
Confidence 11234555667788888888877 459999999999999999987554 23689999
Q ss_pred ecCcccEEEEeeEEecCCceeeecCCCCCeecEEEEceEEecCCcc
Q 038762 202 IEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSA 247 (268)
Q Consensus 202 ~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~~~g 247 (268)
++++++.+|..+.++-+.|||-.+. +++..|+++.|+....|
T Consensus 155 vyNa~~a~V~~ndisy~rDgIy~~~----S~~~~~~gnr~~~~Ryg 196 (408)
T COG3420 155 VYNAPGALVVGNDISYGRDGIYSDT----SQHNVFKGNRFRDLRYG 196 (408)
T ss_pred EEcCCCcEEEcCccccccceEEEcc----cccceecccchhheeee
Confidence 9999999999999999999998877 44455555555443333
No 26
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.72 E-value=7.4e-07 Score=79.76 Aligned_cols=85 Identities=20% Similarity=0.175 Sum_probs=67.0
Q ss_pred EEEEeccccEEEEeEEEeCCC------CcEEEEeeeecEEEEeEEEEcCCCCCC-CceeeecCcccEEEEeeEEec-CCc
Q 038762 149 LVGFLGCRNVNVWNVRLREPA------YWCLHIVRCDNTFIRDMSIYGDFNTPN-NDGIDIEDSNNTVITRVQIDT-GDD 220 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~------~~~i~~~~~~nv~i~~~~i~~~~~~~~-~DGi~~~~~~~v~I~n~~i~~-gDD 220 (268)
.+.-...++++|++++|.++. ..+|++..|++++|+++++.. + .-||.++.|+ ..|+++.+.. .+.
T Consensus 108 lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~g-----sg~FGI~L~~~~-~~I~~N~I~g~~~~ 181 (455)
T TIGR03808 108 LLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITG-----SGGNGIWLETVS-GDISGNTITQIAVT 181 (455)
T ss_pred EEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEc-----CCcceEEEEcCc-ceEecceEeccccc
Confidence 455677899999999998754 448999999999999999997 4 5899999998 8888888876 777
Q ss_pred eeeecCCCCCeecEEEEceEEec
Q 038762 221 AICPKTYTGPLYNLTATDSWIRT 243 (268)
Q Consensus 221 ~i~i~s~~~~~~nv~v~n~~~~~ 243 (268)
.|.+.. +++..|++|++.+
T Consensus 182 ~I~lw~----S~g~~V~~N~I~g 200 (455)
T TIGR03808 182 AIVSFD----ALGLIVARNTIIG 200 (455)
T ss_pred eEEEec----cCCCEEECCEEEc
Confidence 777654 4555555555553
No 27
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.69 E-value=1.6e-07 Score=73.19 Aligned_cols=112 Identities=21% Similarity=0.245 Sum_probs=73.1
Q ss_pred CceEEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEec-CCceeee
Q 038762 146 RPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDT-GDDAICP 224 (268)
Q Consensus 146 ~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~-gDD~i~i 224 (268)
...++.+..+..++|++++|.+ ...++.+....+++++++.+.. ...|+.+..+..+.|++|.+.. ++.+|.+
T Consensus 22 ~~~gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~-----~~~~i~~~~~~~~~i~~~~i~~~~~~gi~~ 95 (158)
T PF13229_consen 22 GGDGIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISD-----NGSGIYVSGSSNITIENNRIENNGDYGIYI 95 (158)
T ss_dssp SSECEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES------SEEEECCS-CS-EEES-EEECSSS-SCE-
T ss_pred CCeEEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEE-----ccceEEEEecCCceecCcEEEcCCCccEEE
Confidence 3456777777777777888877 5567777777778888888875 2378888888888888888887 5668877
Q ss_pred cCCCCCeecEEEEceEEecCC-ccEEeeeee--eeeEEeEEEEee
Q 038762 225 KTYTGPLYNLTATDSWIRTKS-SAIKLGSAS--WFDFKALVFDNI 266 (268)
Q Consensus 225 ~s~~~~~~nv~v~n~~~~~~~-~gi~ig~~~--~~~~~ni~~~ni 266 (268)
.. ..++++|++|+|.... .|+.+.... ...+++.++.+.
T Consensus 96 ~~---~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~~ 137 (158)
T PF13229_consen 96 SN---SSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISNN 137 (158)
T ss_dssp TC---EECS-EEES-EEECCTTSSCEEEECC--S-EEECEEEECE
T ss_pred ec---cCCCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEeC
Confidence 64 4678999999999765 677776554 556677766653
No 28
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.67 E-value=1.6e-06 Score=72.82 Aligned_cols=106 Identities=21% Similarity=0.194 Sum_probs=84.5
Q ss_pred eEEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecCC
Q 038762 148 RLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTY 227 (268)
Q Consensus 148 ~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~ 227 (268)
.++.+..+++++|++.++.+.. .|+.+..+.+.+|++..+.. +..||.+..+.+.+|+++.+.+...+|.+..
T Consensus 58 ~GI~~~~s~~~~i~~n~i~~n~-~Gi~l~~s~~~~I~~N~i~~-----n~~GI~l~~s~~~~I~~N~i~~~~~GI~l~~- 130 (236)
T PF05048_consen 58 YGIHLMGSSNNTIENNTISNNG-YGIYLMGSSNNTISNNTISN-----NGYGIYLYGSSNNTISNNTISNNGYGIYLSS- 130 (236)
T ss_pred eEEEEEccCCCEEEeEEEEccC-CCEEEEcCCCcEEECCEecC-----CCceEEEeeCCceEEECcEEeCCCEEEEEEe-
Confidence 4688899999999999999886 78999999888999999986 4459999888888999999988888888876
Q ss_pred CCCeecEEEEceEEecC-CccEE-eeeeeeeeEEeEEE
Q 038762 228 TGPLYNLTATDSWIRTK-SSAIK-LGSASWFDFKALVF 263 (268)
Q Consensus 228 ~~~~~nv~v~n~~~~~~-~~gi~-ig~~~~~~~~ni~~ 263 (268)
+.+.+|++|+|... ..||. +.......|.+..|
T Consensus 131 ---s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~~N~f 165 (236)
T PF05048_consen 131 ---SSNNTITGNTISNNTDYGIYFLSGSSGNTIYNNNF 165 (236)
T ss_pred ---CCCCEEECeEEeCCCccceEEeccCCCCEEECCCc
Confidence 48888999999887 77887 43333344444444
No 29
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.66 E-value=1.1e-06 Score=73.78 Aligned_cols=109 Identities=20% Similarity=0.166 Sum_probs=93.5
Q ss_pred eEEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecCC
Q 038762 148 RLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTY 227 (268)
Q Consensus 148 ~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~ 227 (268)
.++.+..+.+++|++.++.+. .+|+.+..|.+++|+++.+.. +..||.+..+.+.+|+++.+.....+|.+..
T Consensus 36 ~gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~-----n~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~- 108 (236)
T PF05048_consen 36 DGIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISN-----NGYGIYLMGSSNNTISNNTISNNGYGIYLYG- 108 (236)
T ss_pred CEEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEc-----cCCCEEEEcCCCcEEECCEecCCCceEEEee-
Confidence 357889999999999999998 679999999999999999997 5599999988877999999998656998876
Q ss_pred CCCeecEEEEceEEecCCccEEeeeeeeeeEEeEEEEee
Q 038762 228 TGPLYNLTATDSWIRTKSSAIKLGSASWFDFKALVFDNI 266 (268)
Q Consensus 228 ~~~~~nv~v~n~~~~~~~~gi~ig~~~~~~~~ni~~~ni 266 (268)
+.+.+|++|++.....||.+.......+++.+|.+.
T Consensus 109 ---s~~~~I~~N~i~~~~~GI~l~~s~~n~I~~N~i~~n 144 (236)
T PF05048_consen 109 ---SSNNTISNNTISNNGYGIYLSSSSNNTITGNTISNN 144 (236)
T ss_pred ---CCceEEECcEEeCCCEEEEEEeCCCCEEECeEEeCC
Confidence 577899999999888899887666667777776654
No 30
>PLN02480 Probable pectinesterase
Probab=98.56 E-value=6.3e-06 Score=72.37 Aligned_cols=204 Identities=16% Similarity=0.160 Sum_probs=105.4
Q ss_pred CCCchhHHHHHHHHHhCCCCC-CCcEEEECCCeEEEeeEEec---CceEEEEcC--CeeEEeCCCCCCCCCCCCceEEEE
Q 038762 25 DGIHYDTAAIQSAIDACPPGN-KPCQVRFPPGEYLTATIRLK---SHVTLNIHE--DATLLGGPRIEDYPEESSRWYVVL 98 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~~-~g~~v~ip~G~Y~~~~l~l~---s~~~l~~~~--ga~l~~~~~~~~~~~~~~~~~~i~ 98 (268)
||. .+-..||+||+++++.. ..-+|+|.||+|. +.+.++ .+++|.+++ .++|........- ... ..+
T Consensus 55 ~G~-g~f~TIQ~AIdaap~~~~~~~~I~Ik~GvY~-E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~---~~s-aTv- 127 (343)
T PLN02480 55 NGK-GDFTSVQSAIDAVPVGNSEWIIVHLRKGVYR-EKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDN---AAS-ATF- 127 (343)
T ss_pred CCC-CCcccHHHHHhhCccCCCceEEEEEcCcEEE-EEEEECCCCceEEEEecCCCCeEEEccccccCC---CCc-eEE-
Confidence 443 46889999999998711 1124889999996 666663 458888775 4555553321110 001 111
Q ss_pred EEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEE-eccccEEEEeEEEeCCCCcEEEEee
Q 038762 99 AENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGF-LGCRNVNVWNVRLREPAYWCLHIVR 177 (268)
Q Consensus 99 ~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~nv~I~~v~i~n~~~~~i~~~~ 177 (268)
....+++++++- +|... +... . ......+++.+ ...+.+.+++|+|..-. ..+. ..
T Consensus 128 tV~a~~f~a~nL-Tf~Nt---a~~g--~---------------~~~~~~QAVAl~v~gDra~f~~c~f~G~Q-DTLy-~~ 184 (343)
T PLN02480 128 TVEAPHFVAFGI-SIRND---APTG--M---------------AFTSENQSVAAFVGADKVAFYHCAFYSTH-NTLF-DY 184 (343)
T ss_pred EEECCCEEEEee-EEEec---CCCC--C---------------CCCCCCceEEEEecCCcEEEEeeEEeccc-ceeE-eC
Confidence 123344444441 22211 0000 0 00011233333 45777888888886542 2332 22
Q ss_pred eecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCc------e-eeecC-CCCCeecEEEEceEEecCCccEE
Q 038762 178 CDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDD------A-ICPKT-YTGPLYNLTATDSWIRTKSSAIK 249 (268)
Q Consensus 178 ~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD------~-i~i~s-~~~~~~nv~v~n~~~~~~~~gi~ 249 (268)
.-...+++|.|.. ..|-| .+.-...+++|++..-.+ + |.--+ .........|.||++.+. ..+.
T Consensus 185 ~gR~yf~~C~IeG-----~VDFI--FG~g~a~fe~C~i~s~~~~~~~~~G~ITA~~r~~~~~~GfvF~~C~i~g~-g~~y 256 (343)
T PLN02480 185 KGRHYYHSCYIQG-----SIDFI--FGRGRSIFHNCEIFVIADRRVKIYGSITAHNRESEDNSGFVFIKGKVYGI-GEVY 256 (343)
T ss_pred CCCEEEEeCEEEe-----eeeEE--ccceeEEEEccEEEEecCCCCCCceEEEcCCCCCCCCCEEEEECCEEccc-Ccee
Confidence 3346777888876 33322 244478889999876321 1 21111 112346799999999863 2355
Q ss_pred eeeeeeeeEEeEEEEeeE
Q 038762 250 LGSASWFDFKALVFDNIT 267 (268)
Q Consensus 250 ig~~~~~~~~ni~~~ni~ 267 (268)
+|--+. .+..+.|.++.
T Consensus 257 LGRPW~-~ya~vVf~~t~ 273 (343)
T PLN02480 257 LGRAKG-AYSRVIFAKTY 273 (343)
T ss_pred eecCCC-CcceEEEEecc
Confidence 554332 24455555443
No 31
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.47 E-value=6.5e-06 Score=73.61 Aligned_cols=198 Identities=16% Similarity=0.152 Sum_probs=79.4
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEECCCeEEEeeEEec------CceEEEEcCC--eeEEeCCCCCCCCCCCCceEEEEEEe
Q 038762 30 DTAAIQSAIDACPPGNKPCQVRFPPGEYLTATIRLK------SHVTLNIHED--ATLLGGPRIEDYPEESSRWYVVLAEN 101 (268)
Q Consensus 30 ~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~~l~l~------s~~~l~~~~g--a~l~~~~~~~~~~~~~~~~~~i~~~~ 101 (268)
+.++||+||++|++ |.+|+++.|+|.-..+.++ .+++|.-+.. ++|.+.. .+. ..
T Consensus 3 s~~~lq~Ai~~a~p---GD~I~L~~Gty~~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s-------------~l~-i~ 65 (425)
T PF14592_consen 3 SVAELQSAIDNAKP---GDTIVLADGTYKDVEIVFKGSGTAAKPITLRAENPGKVVITGES-------------NLR-IS 65 (425)
T ss_dssp SHHHHHHHHHH--T---T-EEEE-SEEEET-EEEE-S--BTTB-EEEEESSTTSEEEEES--------------EEE-E-
T ss_pred CHHHHHHHHHhCCC---CCEEEECCceeecceEEEEecccCCCCEEEEecCCCeEEEecce-------------eEE-EE
Confidence 46899999999988 9999999999963234332 3466655432 2222210 011 12
Q ss_pred eeccEEEeccEE-ecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCC--C------CcE
Q 038762 102 ATDVGITGGGVV-DGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREP--A------YWC 172 (268)
Q Consensus 102 ~~nv~I~G~G~i-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~--~------~~~ 172 (268)
.+.++|+| -.+ +|... ....+. . +. ......+.+.++.++.|.+- + .|-
T Consensus 66 G~yl~v~G-L~F~ng~~~---------~~~vi~----------f-r~-~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv 123 (425)
T PF14592_consen 66 GSYLVVSG-LKFKNGYTP---------TGAVIS----------F-RN-GGDASYANHCRLTNCVIDDFNNPDREESDNWV 123 (425)
T ss_dssp SSSEEEES--EEEEE------------TTT--T----------T-S---SEEE-SSS-EEES-EEES--SS-S-SEEE--
T ss_pred eeeEEEeC-eEEecCCCC---------CCceEE----------e-ec-CCCcceecceEEEeEEeeccCCcccccCceEE
Confidence 34444444 122 11100 000000 0 00 00112467888888888752 1 121
Q ss_pred E-EEeeeecEEEEeEEEEcCCCCCCCceee--ec----CcccEEEEeeEEe-------cCCceeeecCCCC--CeecEEE
Q 038762 173 L-HIVRCDNTFIRDMSIYGDFNTPNNDGID--IE----DSNNTVITRVQID-------TGDDAICPKTYTG--PLYNLTA 236 (268)
Q Consensus 173 i-~~~~~~nv~i~~~~i~~~~~~~~~DGi~--~~----~~~~v~I~n~~i~-------~gDD~i~i~s~~~--~~~nv~v 236 (268)
. .....++.+|+++.+.........=.+. .. ...+-+|+++.|. ++-..|.++.+.. ..++.+|
T Consensus 124 ~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~s~t~V 203 (425)
T PF14592_consen 124 TIYSLYGKHNRVDHNYFQGKTNRGPTLAVRVILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSDSNTTV 203 (425)
T ss_dssp -TT-----S-EEES-EEE---SSS-SEEE--S--SS-------EEES-EEE-E---SSS---SEEE-SSTT-B-----EE
T ss_pred EEEEeeccCceEEccEeeccccCCcEEEEEecccCccccccCceEEeccccccCCCCCCCceeEEEecccccccccceee
Confidence 0 0246788899999998743222222222 11 1225578999986 2346677766443 4578899
Q ss_pred EceEEecCCccEEeeee--eeeeEEeEEEEee
Q 038762 237 TDSWIRTKSSAIKLGSA--SWFDFKALVFDNI 266 (268)
Q Consensus 237 ~n~~~~~~~~gi~ig~~--~~~~~~ni~~~ni 266 (268)
++|.|..+..-..|-|. ....|++.+|.++
T Consensus 204 e~NlFe~cdGE~EIISvKS~~N~ir~Ntf~es 235 (425)
T PF14592_consen 204 ENNLFERCDGEVEIISVKSSDNTIRNNTFRES 235 (425)
T ss_dssp ES-EEEEE-SSSEEEEEESBT-EEES-EEES-
T ss_pred ecchhhhcCCceeEEEeecCCceEeccEEEec
Confidence 99999875433333332 3347777777765
No 32
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.42 E-value=1.5e-05 Score=66.30 Aligned_cols=78 Identities=22% Similarity=0.258 Sum_probs=54.7
Q ss_pred EEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEec-CCceeeecCCC
Q 038762 150 VGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDT-GDDAICPKTYT 228 (268)
Q Consensus 150 i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~-gDD~i~i~s~~ 228 (268)
-.|.+|+|+.|+|.+|..--. |..|+||+|+|..|.+- .=-+.|+|++..||+|++ ..=|.
T Consensus 150 Y~Fq~~kNvei~ns~l~sKDA----FWn~eNVtVyDS~i~GE--------YLgW~SkNltliNC~I~g~QpLCY------ 211 (277)
T PF12541_consen 150 YSFQYCKNVEIHNSKLDSKDA----FWNCENVTVYDSVINGE--------YLGWNSKNLTLINCTIEGTQPLCY------ 211 (277)
T ss_pred EEeeceeeEEEEccEEecccc----cccCCceEEEcceEeee--------EEEEEcCCeEEEEeEEeccCccEe------
Confidence 456777888888888754322 55788888888887652 111357888888998887 44443
Q ss_pred CCeecEEEEceEEecCCcc
Q 038762 229 GPLYNLTATDSWIRTKSSA 247 (268)
Q Consensus 229 ~~~~nv~v~n~~~~~~~~g 247 (268)
++|++++||++.+++-.
T Consensus 212 --~~~L~l~nC~~~~tdla 228 (277)
T PF12541_consen 212 --CDNLVLENCTMIDTDLA 228 (277)
T ss_pred --ecceEEeCcEeecceee
Confidence 78999999999866544
No 33
>PLN02773 pectinesterase
Probab=98.35 E-value=0.0001 Score=64.11 Aligned_cols=47 Identities=32% Similarity=0.453 Sum_probs=33.0
Q ss_pred CCCchhHHHHHHHHHhCCCCCC--CcEEEECCCeEEEeeEEec---CceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPGNK--PCQVRFPPGEYLTATIRLK---SHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~~~--g~~v~ip~G~Y~~~~l~l~---s~~~l~~~~ 74 (268)
||.. |-.-||+||++++. .. .-+|+|.||+|. +.+.|+ .+++|.++.
T Consensus 12 dGsG-df~TIq~Aida~P~-~~~~~~~I~Ik~G~Y~-E~V~I~~~k~~itl~G~~ 63 (317)
T PLN02773 12 DGSG-DYCTVQDAIDAVPL-CNRCRTVIRVAPGVYR-QPVYVPKTKNLITLAGLS 63 (317)
T ss_pred CCCC-CccCHHHHHhhchh-cCCceEEEEEeCceEE-EEEEECcCCccEEEEeCC
Confidence 4433 37899999999976 22 237899999995 555553 368887753
No 34
>smart00656 Amb_all Amb_all domain.
Probab=98.24 E-value=1.2e-05 Score=65.22 Aligned_cols=97 Identities=16% Similarity=0.189 Sum_probs=65.2
Q ss_pred ceEEEEeccccEEEEeEEEeCCC------CcEEEEeeeecEEEEeEEEEcCC----CCCCCcee-eec-CcccEEEEeeE
Q 038762 147 PRLVGFLGCRNVNVWNVRLREPA------YWCLHIVRCDNTFIRDMSIYGDF----NTPNNDGI-DIE-DSNNTVITRVQ 214 (268)
Q Consensus 147 ~~~i~~~~~~nv~I~~v~i~n~~------~~~i~~~~~~nv~i~~~~i~~~~----~~~~~DGi-~~~-~~~~v~I~n~~ 214 (268)
...|.+..++||.|+|++|++.. ..++.+..+++|.|+.|++.... .....||. ++. .+.+++|++|.
T Consensus 31 g~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~ 110 (190)
T smart00656 31 GGGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNY 110 (190)
T ss_pred eeEEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECce
Confidence 45678878889999999998743 35788888888888888887531 01124554 443 45688888888
Q ss_pred EecCCceeeecCCCCC----eecEEEEceEEec
Q 038762 215 IDTGDDAICPKTYTGP----LYNLTATDSWIRT 243 (268)
Q Consensus 215 i~~gDD~i~i~s~~~~----~~nv~v~n~~~~~ 243 (268)
|....-+.-++++... ..+|++.+|++..
T Consensus 111 f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~ 143 (190)
T smart00656 111 FHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGN 143 (190)
T ss_pred EecCCEEEEEccCCCccccccceEEEECcEEcC
Confidence 8765555555553222 2368888888864
No 35
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.23 E-value=6.4e-05 Score=63.68 Aligned_cols=116 Identities=18% Similarity=0.241 Sum_probs=83.8
Q ss_pred EEEEeeeccEEEecc---EEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCC----
Q 038762 97 VLAENATDVGITGGG---VVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPA---- 169 (268)
Q Consensus 97 i~~~~~~nv~I~G~G---~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~---- 169 (268)
+....+.|++|.|.| ++. ..+|.+....||.|+|++|+..+
T Consensus 95 ~~iki~sNkTivG~g~~a~~~--------------------------------g~gl~i~~a~NVIirNltf~~~~~~d~ 142 (345)
T COG3866 95 ITIKIGSNKTIVGSGADATLV--------------------------------GGGLKIRDAGNVIIRNLTFEGFYQGDP 142 (345)
T ss_pred EEEeeccccEEEeeccccEEE--------------------------------eceEEEEeCCcEEEEeeEEEeeccCCC
Confidence 556888999999954 222 23677888999999999999765
Q ss_pred -CcEEEE-eeeecEEEEeEEEEcCCC---CCCCcee-eec-CcccEEEEeeEEecCCceeeecCCC-----CCeecEEEE
Q 038762 170 -YWCLHI-VRCDNTFIRDMSIYGDFN---TPNNDGI-DIE-DSNNTVITRVQIDTGDDAICPKTYT-----GPLYNLTAT 237 (268)
Q Consensus 170 -~~~i~~-~~~~nv~i~~~~i~~~~~---~~~~DGi-~~~-~~~~v~I~n~~i~~gDD~i~i~s~~-----~~~~nv~v~ 237 (268)
...|.+ ..+.|+.|++|++..... ....||. ++. .+.+|+|++|.|...|-..-+++.. ..-.+|++.
T Consensus 143 ~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~h 222 (345)
T COG3866 143 NYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIH 222 (345)
T ss_pred CCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEe
Confidence 457888 788999999999986221 1234554 454 4568999999999887777666643 234558888
Q ss_pred ceEEecC
Q 038762 238 DSWIRTK 244 (268)
Q Consensus 238 n~~~~~~ 244 (268)
+|+|.+.
T Consensus 223 hNyFkn~ 229 (345)
T COG3866 223 HNYFKNL 229 (345)
T ss_pred ccccccc
Confidence 7777643
No 36
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.16 E-value=0.00061 Score=62.26 Aligned_cols=158 Identities=18% Similarity=0.221 Sum_probs=83.4
Q ss_pred CcEEEECCCeEEEeeEEec---CceEEEEcCCeeEEeCCCC------CCCCCCCC----------ceEEEEEEeeeccEE
Q 038762 47 PCQVRFPPGEYLTATIRLK---SHVTLNIHEDATLLGGPRI------EDYPEESS----------RWYVVLAENATDVGI 107 (268)
Q Consensus 47 g~~v~ip~G~Y~~~~l~l~---s~~~l~~~~ga~l~~~~~~------~~~~~~~~----------~~~~i~~~~~~nv~I 107 (268)
.-+|||.||.|.-+.+... +++.+.+. ++|-+..-. +.|..... .|..+...+..++.+
T Consensus 256 ~~~VYlApGAyVkGAf~~~~~~~nv~i~G~--GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~ 333 (582)
T PF03718_consen 256 TKWVYLAPGAYVKGAFEYTDTQQNVKITGR--GVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTC 333 (582)
T ss_dssp --EEEE-TTEEEES-EEE---SSEEEEESS--SEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEE
T ss_pred ccEEEEcCCcEEEEEEEEccCCceEEEEee--EEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEEE
Confidence 4589999999988888765 44555444 677664321 11210000 011112334455566
Q ss_pred EeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccc----cEEEEeEEEeCCCCc---EEEEeeeec
Q 038762 108 TGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCR----NVNVWNVRLREPAYW---CLHIVRCDN 180 (268)
Q Consensus 108 ~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----nv~I~~v~i~n~~~~---~i~~~~~~n 180 (268)
.|. +|.. +....|.+.+.. +..|+|.++..+-.| |+.+ +.+
T Consensus 334 ~Gi-TI~~-----------------------------pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~l--y~n 381 (582)
T PF03718_consen 334 EGI-TIND-----------------------------PPFHSMDLYGNENDKFSMNISNYKQVGAWYFQTDGIEL--YPN 381 (582)
T ss_dssp ES--EEE-------------------------------SS-SEEEESSSGGGEEEEEEEEEEE---CTT----B----TT
T ss_pred Eee-EecC-----------------------------CCcceEEecCCccccccceeeceeeeeeEEeccCCccc--cCC
Confidence 552 3221 112346666444 489999999875444 5544 478
Q ss_pred EEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecC--CceeeecCCCCCeecEEEEceEEecC
Q 038762 181 TFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTG--DDAICPKTYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 181 v~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~g--DD~i~i~s~~~~~~nv~v~n~~~~~~ 244 (268)
-+|+||-++. +.|+|.+.. .++.|+||.+... +-.|-.+-..+..+||+|+|+.+-.+
T Consensus 382 S~i~dcF~h~-----nDD~iKlYh-S~v~v~~~ViWk~~Ngpiiq~GW~pr~isnv~veni~IIh~ 441 (582)
T PF03718_consen 382 STIRDCFIHV-----NDDAIKLYH-SNVSVSNTVIWKNENGPIIQWGWTPRNISNVSVENIDIIHN 441 (582)
T ss_dssp -EEEEEEEEE-----SS-SEE--S-TTEEEEEEEEEE-SSS-SEE--CS---EEEEEEEEEEEEE-
T ss_pred CeeeeeEEEe-----cCchhheee-cCcceeeeEEEecCCCCeEEeeccccccCceEEeeeEEEee
Confidence 8889999997 899998887 5999999999762 23344554456789999999988654
No 37
>smart00656 Amb_all Amb_all domain.
Probab=98.13 E-value=0.00061 Score=55.28 Aligned_cols=159 Identities=13% Similarity=0.045 Sum_probs=101.7
Q ss_pred eeEEecCceEEEEcC-CeeEEeCCCCCCCCCCCCceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccC
Q 038762 60 ATIRLKSHVTLNIHE-DATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTG 138 (268)
Q Consensus 60 ~~l~l~s~~~l~~~~-ga~l~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~ 138 (268)
.+|.++|+.||.+.. +++|++. .+.+..++||.|+. -++.+-....
T Consensus 10 ~~i~v~snkTI~G~~~~~~i~g~--------------gl~i~~~~NVIirn-l~i~~~~~~~------------------ 56 (190)
T smart00656 10 GTIIINSNKTIDGRGSKVEIKGG--------------GLTIKSVSNVIIRN-LTIHDPKPVY------------------ 56 (190)
T ss_pred ceEEeCCCCEEEecCCCcEEEee--------------EEEEEecceEEEeC-CEEECCccCC------------------
Confidence 468888999998863 4666542 23344577777777 2333211110
Q ss_pred CCCCCCCCceEEEEeccccEEEEeEEEeCCC--------CcE-EE-EeeeecEEEEeEEEEcCCCCCCCceeeecC----
Q 038762 139 ACSGDECRPRLVGFLGCRNVNVWNVRLREPA--------YWC-LH-IVRCDNTFIRDMSIYGDFNTPNNDGIDIED---- 204 (268)
Q Consensus 139 ~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~--------~~~-i~-~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~---- 204 (268)
...+.+|.+..+++|.|++|++.... ..+ +. ...+++++++++.+... ..|.-+..
T Consensus 57 -----~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h-----~~~~liG~~d~~ 126 (190)
T smart00656 57 -----GSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNH-----WKVMLLGHSDSD 126 (190)
T ss_pred -----CCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEecC-----CEEEEEccCCCc
Confidence 01234788899999999999998751 122 23 23578999999999752 22222221
Q ss_pred ----cccEEEEeeEEec-CCceeeecCCCCCeecEEEEceEEecCC-ccEEeeeeeeeeEEeEEEEee
Q 038762 205 ----SNNTVITRVQIDT-GDDAICPKTYTGPLYNLTATDSWIRTKS-SAIKLGSASWFDFKALVFDNI 266 (268)
Q Consensus 205 ----~~~v~I~n~~i~~-gDD~i~i~s~~~~~~nv~v~n~~~~~~~-~gi~ig~~~~~~~~ni~~~ni 266 (268)
..+|++.++.|.+ ..-.=.+.. ..+.+.||++.+.. .++..+......+|+..|+++
T Consensus 127 ~~~~~~~vT~h~N~~~~~~~R~P~~r~-----g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 127 TDDGKMRVTIAHNYFGNLRQRAPRVRF-----GYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred cccccceEEEECcEEcCcccCCCcccC-----CEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence 2369999999965 222211221 26899999998765 667777777788899998875
No 38
>PLN02671 pectinesterase
Probab=98.10 E-value=0.0008 Score=59.45 Aligned_cols=47 Identities=23% Similarity=0.390 Sum_probs=33.4
Q ss_pred CCCchhHHHHHHHHHhCCCCC-CCcEEEECCCeEEEeeEEe---cCceEEEEc
Q 038762 25 DGIHYDTAAIQSAIDACPPGN-KPCQVRFPPGEYLTATIRL---KSHVTLNIH 73 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~~-~g~~v~ip~G~Y~~~~l~l---~s~~~l~~~ 73 (268)
||.. +-.-||+||+++++.. ..-+|+|.||+|. +.+.+ +.+++|.++
T Consensus 66 dGsG-df~TIQ~AIdavP~~~~~~~~I~Ik~GvY~-EkV~I~~~k~~Itl~G~ 116 (359)
T PLN02671 66 NGGG-DSLTVQGAVDMVPDYNSQRVKIYILPGIYR-EKVLVPKSKPYISFIGN 116 (359)
T ss_pred CCCC-CccCHHHHHHhchhcCCccEEEEEeCceEE-EEEEECCCCCeEEEEec
Confidence 4433 4789999999997621 1247999999995 44444 467888886
No 39
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.09 E-value=6.6e-05 Score=63.61 Aligned_cols=116 Identities=21% Similarity=0.218 Sum_probs=86.2
Q ss_pred EEEEeccccEEEEeEEEe-CCCCcEEEEeeeecEEEEeEEEEcCC-CCCCCceeee-cCcccEEEEeeEEec--------
Q 038762 149 LVGFLGCRNVNVWNVRLR-EPAYWCLHIVRCDNTFIRDMSIYGDF-NTPNNDGIDI-EDSNNTVITRVQIDT-------- 217 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~-n~~~~~i~~~~~~nv~i~~~~i~~~~-~~~~~DGi~~-~~~~~v~I~n~~i~~-------- 217 (268)
.+.+.-|.|.+|.++--. ...++++.+...+||.|+|+.|+... .-++-|+|.+ ..+++|.|++|+|..
T Consensus 94 k~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~ 173 (345)
T COG3866 94 KITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGS 173 (345)
T ss_pred eEEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEecccccccccc
Confidence 377888898888877532 33477899999999999999998632 2234699999 578899999999986
Q ss_pred -CCceeeecCCCCCeecEEEEceEEecCCccEEeeeee---------eeeEEeEEEEeeE
Q 038762 218 -GDDAICPKTYTGPLYNLTATDSWIRTKSSAIKLGSAS---------WFDFKALVFDNIT 267 (268)
Q Consensus 218 -gDD~i~i~s~~~~~~nv~v~n~~~~~~~~gi~ig~~~---------~~~~~ni~~~ni~ 267 (268)
+|..+-++. .+..|+|.+|.|++...+.-+|+.. ..++.+..|+|+.
T Consensus 174 h~DGl~Dik~---~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~ 230 (345)
T COG3866 174 HGDGLVDIKK---DANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLY 230 (345)
T ss_pred CCCccEEecc---CCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccccccc
Confidence 233355655 6889999999999877777777632 2566666666653
No 40
>PLN02682 pectinesterase family protein
Probab=98.08 E-value=0.0005 Score=60.94 Aligned_cols=45 Identities=29% Similarity=0.367 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHhCCCCC-CCcEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 29 YDTAAIQSAIDACPPGN-KPCQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 29 d~t~aiq~Ai~~~~~~~-~g~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
-+-.-||+||++++... ..-+|+|.||+|. ..+.+ +.+++|++++
T Consensus 80 Gdf~TIQ~AIdavP~~~~~r~vI~Ik~G~Y~-EkV~Ip~~k~~Itl~G~g 128 (369)
T PLN02682 80 GDFTTIQAAIDSLPVINLVRVVIKVNAGTYR-EKVNIPPLKAYITLEGAG 128 (369)
T ss_pred CCccCHHHHHhhccccCCceEEEEEeCceee-EEEEEeccCceEEEEecC
Confidence 35789999999997621 1247999999995 34444 5688888864
No 41
>PLN02432 putative pectinesterase
Probab=98.07 E-value=0.00059 Score=58.83 Aligned_cols=47 Identities=34% Similarity=0.465 Sum_probs=32.7
Q ss_pred CCCchhHHHHHHHHHhCCCCCC--CcEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPGNK--PCQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~~~--g~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
||.. +-.-||+||++++. .. .-+|+|.||+|. +.+.+ +.+++|.+++
T Consensus 18 ~Gsg-~f~TIq~Aida~p~-~~~~~~~I~I~~G~Y~-E~V~ip~~k~~itl~G~~ 69 (293)
T PLN02432 18 SGKG-DFRKIQDAIDAVPS-NNSQLVFIWVKPGIYR-EKVVVPADKPFITLSGTQ 69 (293)
T ss_pred CCCC-CccCHHHHHhhccc-cCCceEEEEEeCceeE-EEEEEeccCceEEEEEcC
Confidence 4433 47899999999986 32 247899999994 34444 4577777763
No 42
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=98.07 E-value=0.00065 Score=61.09 Aligned_cols=49 Identities=24% Similarity=0.298 Sum_probs=33.0
Q ss_pred cCCCCchhHHHHHHHHHhCCCCC--CCcEEEECCCeEEEeeEEe---cCceEEEEc
Q 038762 23 KGDGIHYDTAAIQSAIDACPPGN--KPCQVRFPPGEYLTATIRL---KSHVTLNIH 73 (268)
Q Consensus 23 ~~dg~~d~t~aiq~Ai~~~~~~~--~g~~v~ip~G~Y~~~~l~l---~s~~~l~~~ 73 (268)
.+||.. +-.-||+||+++.+.. .--+|+|.||+|. +.+.+ +.+++|+++
T Consensus 87 a~dGsG-df~TIQaAIdAa~~~~~~~r~~I~Ik~GvY~-EkV~Ip~~kp~ItL~G~ 140 (422)
T PRK10531 87 AGTQGV-THTTVQAAVDAAIAKRTNKRQYIAVMPGTYQ-GTVYVPAAAPPITLYGT 140 (422)
T ss_pred CCCCCC-CccCHHHHHhhccccCCCceEEEEEeCceeE-EEEEeCCCCceEEEEec
Confidence 345533 4678999999864301 1247899999995 44455 468899885
No 43
>PLN02665 pectinesterase family protein
Probab=97.99 E-value=0.0013 Score=58.40 Aligned_cols=208 Identities=19% Similarity=0.162 Sum_probs=101.1
Q ss_pred CCCchhHHHHHHHHHhCCCCCC-CcEEEECCCeEEEeeEEe---cCceEEEEcC--CeeEEeCCCCCCCCCCCCceEEEE
Q 038762 25 DGIHYDTAAIQSAIDACPPGNK-PCQVRFPPGEYLTATIRL---KSHVTLNIHE--DATLLGGPRIEDYPEESSRWYVVL 98 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~~~-g~~v~ip~G~Y~~~~l~l---~s~~~l~~~~--ga~l~~~~~~~~~~~~~~~~~~i~ 98 (268)
||.. +-..||+||++++.... --+|+|.||+|. +.+.+ +.+++|.+++ .++|........+.... ....
T Consensus 75 dG~G-df~TIq~AIdaiP~~~~~r~vI~Ik~GvY~-EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~---SaTv 149 (366)
T PLN02665 75 DGSG-DFKTITDAIKSIPAGNTQRVIIDIGPGEYN-EKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVY---SATL 149 (366)
T ss_pred CCCC-CccCHHHHHhhCcccCCceEEEEEeCcEEE-EEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcc---eEEE
Confidence 4433 47889999999977211 236889999996 44444 4578888864 24444432211111000 0011
Q ss_pred EEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCCCcEEEEeee
Q 038762 99 AENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYWCLHIVRC 178 (268)
Q Consensus 99 ~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~ 178 (268)
....+++..++- +|... +...... ....-..++... .+...+.+|+|..- +..+... .
T Consensus 150 ~v~a~~F~a~ni-tf~Nt---a~~~~~~---------------~~g~QAVAl~v~-gDka~f~~C~f~G~-QDTL~~~-~ 207 (366)
T PLN02665 150 IVESDYFMAANI-IIKNS---APRPDGK---------------RKGAQAVAMRIS-GDKAAFYNCRFIGF-QDTLCDD-K 207 (366)
T ss_pred EEECCCeEEEee-EEEeC---CCCcCCC---------------CCCcceEEEEEc-CCcEEEEcceeccc-cceeEeC-C
Confidence 122233333331 11100 0000000 000011233332 56677777777643 2233322 2
Q ss_pred ecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCce----eeecCC--CCCeecEEEEceEEecCCccEEeee
Q 038762 179 DNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDA----ICPKTY--TGPLYNLTATDSWIRTKSSAIKLGS 252 (268)
Q Consensus 179 ~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~----i~i~s~--~~~~~nv~v~n~~~~~~~~gi~ig~ 252 (268)
-...+++|.|+. ..|-|. +.-....++|++..-.++ |.--+. ........|.||++.+....+.+|-
T Consensus 208 gr~yf~~CyIeG-----~VDFIF--G~g~a~fe~C~i~s~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~~~~~yLGR 280 (366)
T PLN02665 208 GRHFFKDCYIEG-----TVDFIF--GSGKSLYLNTELHVVGDGGLRVITAQARNSEAEDSGFSFVHCKVTGTGTGAYLGR 280 (366)
T ss_pred CCEEEEeeEEee-----ccceec--cccceeeEccEEEEecCCCcEEEEcCCCCCCCCCceEEEEeeEEecCCCceeecC
Confidence 345677777775 344332 334678899998873222 222111 1234678999999987543456664
Q ss_pred eeeeeEEeEEEEeeE
Q 038762 253 ASWFDFKALVFDNIT 267 (268)
Q Consensus 253 ~~~~~~~ni~~~ni~ 267 (268)
-+. .+..+.|.++.
T Consensus 281 pW~-~ysrvVf~~t~ 294 (366)
T PLN02665 281 AWM-SRPRVVFAYTE 294 (366)
T ss_pred CCC-CcceEEEEccc
Confidence 332 23455555544
No 44
>PLN02634 probable pectinesterase
Probab=97.98 E-value=0.0011 Score=58.62 Aligned_cols=48 Identities=23% Similarity=0.398 Sum_probs=33.6
Q ss_pred CCCchhHHHHHHHHHhCCCCC-CCcEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPGN-KPCQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~~-~g~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
||.. +-..||+||++++... ..-+|+|-||+|. +.+.+ +.+++|.+++
T Consensus 63 dGsG-df~TIQaAIda~P~~~~~r~vI~Ik~GvY~-EkV~Ip~~k~~ItL~G~g 114 (359)
T PLN02634 63 NGHG-DFRSVQDAVDSVPKNNTMSVTIKINAGFYR-EKVVVPATKPYITFQGAG 114 (359)
T ss_pred CCCC-CccCHHHHHhhCcccCCccEEEEEeCceEE-EEEEEcCCCCeEEEEecC
Confidence 4543 4789999999997621 1237999999995 34444 4578888864
No 45
>PLN02176 putative pectinesterase
Probab=97.97 E-value=0.00096 Score=58.63 Aligned_cols=203 Identities=13% Similarity=0.100 Sum_probs=99.7
Q ss_pred CCCCchhHHHHHHHHHhCCCCCCC--cEEEECCCeEEEeeEEe---cCceEEEEcC--CeeEEeCCCCCCCCCCCCceEE
Q 038762 24 GDGIHYDTAAIQSAIDACPPGNKP--CQVRFPPGEYLTATIRL---KSHVTLNIHE--DATLLGGPRIEDYPEESSRWYV 96 (268)
Q Consensus 24 ~dg~~d~t~aiq~Ai~~~~~~~~g--~~v~ip~G~Y~~~~l~l---~s~~~l~~~~--ga~l~~~~~~~~~~~~~~~~~~ 96 (268)
.||.. +-..||+||++++. ... -+|+|.||+|. +.+.+ +.+++|.+++ .++|...... .. . .. ..
T Consensus 45 ~dGsG-df~TIq~AIdavP~-~~~~~~~I~Ik~GvY~-EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~-~t-~--~s-aT 116 (340)
T PLN02176 45 PNDAR-YFKTVQSAIDSIPL-QNQNWIRILIQNGIYR-EKVTIPKEKGYIYMQGKGIEKTIIAYGDHQ-AT-D--TS-AT 116 (340)
T ss_pred CCCCC-CccCHHHHHhhchh-cCCceEEEEECCcEEE-EEEEECCCCccEEEEEcCCCceEEEEeCCc-cc-c--cc-eE
Confidence 34533 47899999999976 222 36899999995 44454 4579998874 2333332211 00 0 00 11
Q ss_pred EEEEeeeccEEEeccEEecC-CcccccchhhcccceecccccCCCCCCCCCceEE-EEeccccEEEEeEEEeCCCCcEEE
Q 038762 97 VLAENATDVGITGGGVVDGQ-AMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLV-GFLGCRNVNVWNVRLREPAYWCLH 174 (268)
Q Consensus 97 i~~~~~~nv~I~G~G~i~g~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~nv~I~~v~i~n~~~~~i~ 174 (268)
+. ...+++..++- +|... +.. . .......+++ .....+...+.+|.|..- +..+.
T Consensus 117 ~~-v~a~~F~a~nl-T~~Nt~~~~------~--------------~~~~~~~QAVAl~v~gDr~~f~~C~f~G~-QDTLy 173 (340)
T PLN02176 117 FT-SYASNIIITGI-TFKNTYNIA------S--------------NSSRPTKPAVAARMLGDKYAIIDSSFDGF-QDTLF 173 (340)
T ss_pred EE-EECCCEEEEee-EEEeCCCcc------C--------------CCCCCccceEEEEecCccEEEEccEEecc-cceeE
Confidence 11 12233333331 11100 000 0 0000011111 122356677777777743 22333
Q ss_pred EeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCc---------eeeecCCC--CCeecEEEEceEEec
Q 038762 175 IVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDD---------AICPKTYT--GPLYNLTATDSWIRT 243 (268)
Q Consensus 175 ~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD---------~i~i~s~~--~~~~nv~v~n~~~~~ 243 (268)
. ..-...+++|.|+. .-|-|- +.-....++|+|..-++ .|.--+.. .......|.||++.+
T Consensus 174 ~-~~gRqyf~~CyIeG-----~VDFIF--G~a~a~Fe~C~I~s~~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg 245 (340)
T PLN02176 174 D-GKGRHYYKRCVISG-----GIDFIF--GYAQSIFEGCTLKLTLGIYPPNEPYGTITAQGRPSPSDKGGFVFKDCTVTG 245 (340)
T ss_pred e-CCcCEEEEecEEEe-----cccEEe--cCceEEEeccEEEEecccCCCCCCcEEEEeCCCCCCCCCcEEEEECCEEcc
Confidence 3 23446777888876 444332 33468889999875321 11111111 233579999999986
Q ss_pred CCccEEeeeeeeeeEEeEEEEeeE
Q 038762 244 KSSAIKLGSASWFDFKALVFDNIT 267 (268)
Q Consensus 244 ~~~gi~ig~~~~~~~~ni~~~ni~ 267 (268)
.. -+.+|--+. .+..++|.|+.
T Consensus 246 ~g-~~yLGRPW~-~yarvVf~~t~ 267 (340)
T PLN02176 246 VG-KALLGRAWG-SYARVIFYRSR 267 (340)
T ss_pred Cc-ceeeecCCC-CCceEEEEecC
Confidence 32 244553322 23445554443
No 46
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=97.95 E-value=0.0011 Score=61.58 Aligned_cols=47 Identities=23% Similarity=0.385 Sum_probs=33.3
Q ss_pred CCCchhHHHHHHHHHhCCCCCC--CcEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPGNK--PCQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~~~--g~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
||. -+-..||+||++++. .. .-+|+|.||+|. +.+.+ +.+++|++++
T Consensus 225 dGs-G~f~TIq~Ai~a~P~-~~~~r~vI~Ik~GvY~-E~V~I~~~k~~itl~G~g 276 (530)
T PLN02933 225 DGT-GNFTTINEAVSAAPN-SSETRFIIYIKGGEYF-ENVELPKKKTMIMFIGDG 276 (530)
T ss_pred CCC-CCccCHHHHHHhchh-cCCCcEEEEEcCceEE-EEEEecCCCceEEEEEcC
Confidence 443 347799999999977 32 247999999996 45555 3467787763
No 47
>PLN02497 probable pectinesterase
Probab=97.94 E-value=0.00066 Score=59.41 Aligned_cols=48 Identities=27% Similarity=0.398 Sum_probs=33.6
Q ss_pred CCCCchhHHHHHHHHHhCCCCCCC--cEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 24 GDGIHYDTAAIQSAIDACPPGNKP--CQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 24 ~dg~~d~t~aiq~Ai~~~~~~~~g--~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
.||.. +-..||+||++++. ... -+|+|-||+|. +.+.+ +.+++|.++.
T Consensus 38 ~dGsG-df~TIq~AIdavP~-~~~~~~~I~Ik~G~Y~-EkV~Ip~~k~~itl~G~g 90 (331)
T PLN02497 38 QSGHG-NFTTIQSAIDSVPS-NNKHWFCINVKAGLYR-EKVKIPYDKPFIVLVGAG 90 (331)
T ss_pred CCCCC-CccCHHHHHhhccc-cCCceEEEEEeCcEEE-EEEEecCCCCcEEEEecC
Confidence 34543 47899999999987 322 26999999995 33444 4678888764
No 48
>PLN02304 probable pectinesterase
Probab=97.93 E-value=0.0015 Score=58.06 Aligned_cols=49 Identities=22% Similarity=0.321 Sum_probs=34.3
Q ss_pred CCCCchhHHHHHHHHHhCCCC-CCCcEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 24 GDGIHYDTAAIQSAIDACPPG-NKPCQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 24 ~dg~~d~t~aiq~Ai~~~~~~-~~g~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
.||. -+-.-||+||+++++. ...-+|+|.||+|. +.+.+ +.+++|.+++
T Consensus 81 ~dGs-Gdf~TIQ~AIdavP~~~~~r~vI~Ik~GvY~-EkV~Ip~~K~~Itl~G~g 133 (379)
T PLN02304 81 PNGC-CNFTTVQSAVDAVGNFSQKRNVIWINSGIYY-EKVTVPKTKPNITFQGQG 133 (379)
T ss_pred CCCC-CCccCHHHHHhhCcccCCCcEEEEEeCeEeE-EEEEECCCCCcEEEEecC
Confidence 3453 3477899999999762 12347899999995 44444 5688888864
No 49
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=97.90 E-value=0.0012 Score=61.68 Aligned_cols=47 Identities=19% Similarity=0.327 Sum_probs=32.9
Q ss_pred CCCchhHHHHHHHHHhCCCCCCC--cEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPGNKP--CQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~~~g--~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
||. -+-..||+||++++. ... -+|+|.||+|. +.+.+ +.+++|.+++
T Consensus 243 dGs-G~f~TIq~Ai~a~P~-~~~~r~vI~Ik~G~Y~-E~V~i~~~k~~i~l~G~g 294 (548)
T PLN02301 243 DGS-GKYKTVKEAVASAPD-NSKTRYVIYVKKGTYK-ENVEIGKKKKNLMLVGDG 294 (548)
T ss_pred CCC-CCcccHHHHHHhhhh-cCCceEEEEEeCceee-EEEEecCCCceEEEEecC
Confidence 443 347899999999977 322 37999999995 34444 3577777763
No 50
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.85 E-value=0.00011 Score=60.19 Aligned_cols=97 Identities=21% Similarity=0.255 Sum_probs=65.4
Q ss_pred eEEEEe-ccccEEEEeEEEeC---------------CCCcEEEEeeeecEEEEeEEEEcCCC---CCCCce-eeec-Ccc
Q 038762 148 RLVGFL-GCRNVNVWNVRLRE---------------PAYWCLHIVRCDNTFIRDMSIYGDFN---TPNNDG-IDIE-DSN 206 (268)
Q Consensus 148 ~~i~~~-~~~nv~I~~v~i~n---------------~~~~~i~~~~~~nv~i~~~~i~~~~~---~~~~DG-i~~~-~~~ 206 (268)
.++.+. .++||.|+|++|++ ....++.+..+.+|.|+.|++..... ....|| +++. .+.
T Consensus 37 ~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~ 116 (200)
T PF00544_consen 37 GGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSD 116 (200)
T ss_dssp SEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTE
T ss_pred ceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCc
Confidence 355565 99999999999998 24557888999999999999986311 112555 5665 577
Q ss_pred cEEEEeeEEecCCceeeecCCC----CCeecEEEEceEEecC
Q 038762 207 NTVITRVQIDTGDDAICPKTYT----GPLYNLTATDSWIRTK 244 (268)
Q Consensus 207 ~v~I~n~~i~~gDD~i~i~s~~----~~~~nv~v~n~~~~~~ 244 (268)
+|+|++|.|...+.+..+++.. ....++++-+|.|...
T Consensus 117 ~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 117 NVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANT 158 (200)
T ss_dssp EEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEE
T ss_pred eEEEEchhccccccccccCCCCCccccCCceEEEEeEEECch
Confidence 9999999998765555555541 1237899999999743
No 51
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.83 E-value=0.0053 Score=54.50 Aligned_cols=175 Identities=14% Similarity=0.064 Sum_probs=104.7
Q ss_pred EeeeccccCCCCchhHHHHHHHHHhCCCCCCCcEEEECCC-eEEE-eeEEecCceEEEEcCCeeEEeCCCCCC-CCCC-C
Q 038762 16 SVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPG-EYLT-ATIRLKSHVTLNIHEDATLLGGPRIED-YPEE-S 91 (268)
Q Consensus 16 ~v~dyga~~dg~~d~t~aiq~Ai~~~~~~~~g~~v~ip~G-~Y~~-~~l~l~s~~~l~~~~ga~l~~~~~~~~-~~~~-~ 91 (268)
.|+.|=..|+. -+.+||+.- .+|.+-|| +|.+ +++.|++...+.+. ||+++....... +.-. .
T Consensus 45 qvkt~~~~P~e------Dle~~I~~h------aKVaL~Pg~~Y~i~~~V~I~~~cYIiGn-GA~V~v~~~~~~~f~v~~~ 111 (386)
T PF01696_consen 45 QVKTYWMEPGE------DLEEAIRQH------AKVALRPGAVYVIRKPVNIRSCCYIIGN-GATVRVNGPDRVAFRVCMQ 111 (386)
T ss_pred eEEEEEcCCCc------CHHHHHHhc------CEEEeCCCCEEEEeeeEEecceEEEECC-CEEEEEeCCCCceEEEEcC
Confidence 45566666542 355566543 35888888 6986 68999999999887 899988432111 1000 1
Q ss_pred CceEEEEEEeeeccEEEeccEEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEeEEEeCCCCc
Q 038762 92 SRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWNVRLREPAYW 171 (268)
Q Consensus 92 ~~~~~i~~~~~~nv~I~G~G~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~ 171 (268)
+.++.+ .+..+|+... =.+++.+ ...+..|....++++.++.|.+..+.
T Consensus 112 ~~~P~V--~gM~~VtF~n-i~F~~~~----------------------------~~~g~~f~~~t~~~~hgC~F~gf~g~ 160 (386)
T PF01696_consen 112 SMGPGV--VGMEGVTFVN-IRFEGRD----------------------------TFSGVVFHANTNTLFHGCSFFGFHGT 160 (386)
T ss_pred CCCCeE--eeeeeeEEEE-EEEecCC----------------------------ccceeEEEecceEEEEeeEEecCcce
Confidence 111221 2333444333 1122211 13456677778899999999988877
Q ss_pred EEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecCCCCCeecEEEEceEEecCCcc
Q 038762 172 CLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSA 247 (268)
Q Consensus 172 ~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~~~g 247 (268)
++... ...+|++|.+.+ .--|+.-.+-..+.|..|.|+--- +.+.+ -.+..+++|.+.++..-
T Consensus 161 cl~~~--~~~~VrGC~F~~-----C~~gi~~~~~~~lsVk~C~FekC~--igi~s----~G~~~i~hn~~~ec~Cf 223 (386)
T PF01696_consen 161 CLESW--AGGEVRGCTFYG-----CWKGIVSRGKSKLSVKKCVFEKCV--IGIVS----EGPARIRHNCASECGCF 223 (386)
T ss_pred eEEEc--CCcEEeeeEEEE-----EEEEeecCCcceEEeeheeeeheE--EEEEe----cCCeEEecceecccceE
Confidence 77555 678888999876 566676655557888888886422 33333 13445555555554443
No 52
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=97.82 E-value=0.002 Score=60.89 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=34.3
Q ss_pred CCCchhHHHHHHHHHhCCCCC-CCcEEEECCCeEEEeeEEec---CceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPGN-KPCQVRFPPGEYLTATIRLK---SHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~~-~g~~v~ip~G~Y~~~~l~l~---s~~~l~~~~ 74 (268)
||.. +-..||+||++++.+. ..-+|+|.||+|.-..+.++ .+++|.+++
T Consensus 279 dGsG-~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~~v~i~~~k~ni~l~G~g 331 (587)
T PLN02484 279 DGNG-TFKTISEAIKKAPEHSSRRTIIYVKAGRYEENNLKVGRKKTNLMFIGDG 331 (587)
T ss_pred CCCC-CcccHHHHHHhccccCCCcEEEEEeCCEEEEEEEEECCCCceEEEEecC
Confidence 4533 4678999999998721 23478999999965445553 478887764
No 53
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=97.81 E-value=0.0021 Score=59.58 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=32.9
Q ss_pred CCCCchhHHHHHHHHHhCCC--CCCCcEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 24 GDGIHYDTAAIQSAIDACPP--GNKPCQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 24 ~dg~~d~t~aiq~Ai~~~~~--~~~g~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
.||.. +-..||+||+++++ ....-+|+|.||+|. +.+.+ +.+++|.+++
T Consensus 231 ~dGsG-~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~-E~V~I~~~k~nItl~G~g 284 (529)
T PLN02170 231 ADGSG-THKTIGEALLSTSLESGGGRTVIYLKAGTYH-ENLNIPTKQKNVMLVGDG 284 (529)
T ss_pred CCCCC-chhhHHHHHHhcccccCCceEEEEEeCCeeE-EEEecCCCCceEEEEEcC
Confidence 35543 47889999997643 122357999999995 44444 4578888764
No 54
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=97.80 E-value=0.00067 Score=58.93 Aligned_cols=44 Identities=34% Similarity=0.460 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHhCCCCCC--CcEEEECCCeEEEeeEEec---CceEEEEcC
Q 038762 29 YDTAAIQSAIDACPPGNK--PCQVRFPPGEYLTATIRLK---SHVTLNIHE 74 (268)
Q Consensus 29 d~t~aiq~Ai~~~~~~~~--g~~v~ip~G~Y~~~~l~l~---s~~~l~~~~ 74 (268)
-+-..||+||++++. .. .-+|+|.||+|. ..+.++ .+++|.++.
T Consensus 10 gdf~TIq~Aida~p~-~~~~~~~I~I~~G~Y~-E~V~i~~~k~~v~l~G~~ 58 (298)
T PF01095_consen 10 GDFTTIQAAIDAAPD-NNTSRYTIFIKPGTYR-EKVTIPRSKPNVTLIGEG 58 (298)
T ss_dssp SSBSSHHHHHHHS-S-SSSS-EEEEE-SEEEE---EEE-STSTTEEEEES-
T ss_pred CCccCHHHHHHhchh-cCCceEEEEEeCeeEc-cccEeccccceEEEEecC
Confidence 356789999999987 32 247999999995 344443 477777763
No 55
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=97.79 E-value=0.0016 Score=60.73 Aligned_cols=48 Identities=25% Similarity=0.357 Sum_probs=32.2
Q ss_pred CCCchhHHHHHHHHHhCCCC-CCCcEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPG-NKPCQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~-~~g~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
||.. +-..||+||++++.. ...-+|+|.||+|.- .+.+ +.+++|.+++
T Consensus 239 dGsG-~f~TIq~Av~a~p~~~~~r~vI~Vk~GvY~E-~V~I~~~k~~i~l~G~g 290 (537)
T PLN02506 239 DGSG-HYRTITEAINEAPNHSNRRYIIYVKKGVYKE-NIDMKKKKTNIMLVGDG 290 (537)
T ss_pred CCCC-CccCHHHHHHhchhcCCCcEEEEEeCCeeeE-EEeccCCCceEEEEEcC
Confidence 4533 477999999999762 123489999999953 3333 3567777663
No 56
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=97.78 E-value=0.0037 Score=58.75 Aligned_cols=48 Identities=27% Similarity=0.421 Sum_probs=32.8
Q ss_pred CCCchhHHHHHHHHHhCCCC--CCCcEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPG--NKPCQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~--~~g~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
||. -+-.-||+||++++.. ..--+|+|.||+|. +.+.+ +.+++|.+++
T Consensus 248 dGs-g~f~TIq~Av~a~p~~~~~~r~vI~vk~GvY~-E~V~i~~~k~~v~l~G~g 300 (553)
T PLN02708 248 DGN-CCYKTVQEAVNAAPDNNGDRKFVIRIKEGVYE-ETVRVPLEKKNVVFLGDG 300 (553)
T ss_pred CCC-CCccCHHHHHHhhhhccCCccEEEEEeCceEE-eeeeecCCCccEEEEecC
Confidence 443 3478899999998771 12248999999996 33443 3577777763
No 57
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=97.77 E-value=0.0023 Score=60.24 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=32.7
Q ss_pred CCCchhHHHHHHHHHhCCCCC----CCcEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPGN----KPCQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~~----~g~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
||.. +-.-||+||++++... .--+|+|.||+|. ..+.+ +.+++|++++
T Consensus 257 dGsG-~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~-E~V~i~~~k~~i~l~G~g 311 (566)
T PLN02713 257 NGTG-NFTTINDAVAAAPNNTDGSNGYFVIYVTAGVYE-EYVSIPKNKKYLMMIGDG 311 (566)
T ss_pred CCCC-CCCCHHHHHHhhhcccCCCCceEEEEEcCcEEE-EEEEecCCCceEEEEecC
Confidence 4533 4778999999987611 1247999999995 44444 3467777763
No 58
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=97.77 E-value=0.0043 Score=57.08 Aligned_cols=48 Identities=27% Similarity=0.349 Sum_probs=33.7
Q ss_pred CCCchhHHHHHHHHHhCCCC-CCCcEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPG-NKPCQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~-~~g~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
||. -+-.-||+||+++++. ...-+|+|.||+|. ..+.+ +.+++|.+++
T Consensus 204 dGs-G~f~TIq~AI~a~P~~~~~r~vI~Ik~GvY~-E~V~I~~~k~nItliGdg 255 (509)
T PLN02488 204 DGS-GKYNTVNAAIAAAPEHSRKRFVIYIKTGVYD-EIVRIGSTKPNLTLIGDG 255 (509)
T ss_pred CCC-CCccCHHHHHHhchhcCCCcEEEEEeCCeeE-EEEEecCCCccEEEEecC
Confidence 443 4577899999999772 11247999999995 34444 4578888874
No 59
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=97.76 E-value=0.0019 Score=60.37 Aligned_cols=48 Identities=23% Similarity=0.229 Sum_probs=33.2
Q ss_pred CCCCchhHHHHHHHHHhCCCCCC-----CcEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 24 GDGIHYDTAAIQSAIDACPPGNK-----PCQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 24 ~dg~~d~t~aiq~Ai~~~~~~~~-----g~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
.||.. +-.-||+||++++. .. --+|+|.+|+|. ..+.+ +.+++|.+++
T Consensus 229 ~dGsG-~f~TI~~Av~a~p~-~~~~~~~r~vI~vk~G~Y~-E~V~i~~~k~~i~l~G~g 284 (538)
T PLN03043 229 PYGTD-NFTTITDAIAAAPN-NSKPEDGYFVIYAREGYYE-EYVVVPKNKKNIMLIGDG 284 (538)
T ss_pred CCCCC-CCcCHHHHHHhccc-cCCCCcceEEEEEcCeeeE-EEEEeCCCCCcEEEEecC
Confidence 35543 47899999999987 32 138999999995 34444 3467777763
No 60
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=97.75 E-value=0.00099 Score=56.34 Aligned_cols=221 Identities=16% Similarity=0.170 Sum_probs=113.9
Q ss_pred CCceeEEeeeccccCCCCchhHHHHHHHHHhCCCCCCCcEEEECCCeEE--E-eeEEecCceEEEEcCCeeEEeCCCCCC
Q 038762 10 THIHIHSVIDFGAKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPGEYL--T-ATIRLKSHVTLNIHEDATLLGGPRIED 86 (268)
Q Consensus 10 ~~~~~~~v~dyga~~dg~~d~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~--~-~~l~l~s~~~l~~~~ga~l~~~~~~~~ 86 (268)
+....+++.||.. .|=-++|.+|+.+ +.+|++|+|--. + ..+.++.+-||.+. +.|++.+.. .
T Consensus 30 ~~~~~vni~dy~~-----~dwiasfkqaf~e------~qtvvvpagl~cenint~ifip~gktl~v~--g~l~gngrg-r 95 (464)
T PRK10123 30 PARQSVNINDYNP-----HDWIASFKQAFSE------GQTVVVPAGLVCDNINTGIFIPPGKTLHIL--GSLRGNGRG-R 95 (464)
T ss_pred CCCceeehhhcCc-----ccHHHHHHHHhcc------CcEEEecCccEecccccceEeCCCCeEEEE--EEeecCCce-e
Confidence 4667899999954 4567889999875 447999999542 3 35777777777776 455553210 0
Q ss_pred CCCCCCceEEE-EEEeeeccEEEecc---EEecCCcccccchhhcccceecccccCCCCCCCCCceEEEEeccccEEEEe
Q 038762 87 YPEESSRWYVV-LAENATDVGITGGG---VVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLVGFLGCRNVNVWN 162 (268)
Q Consensus 87 ~~~~~~~~~~i-~~~~~~nv~I~G~G---~i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~ 162 (268)
+...++....- .....+|+++.=+| +|.|-... .+.+-. ..+ -+...|+. -+|++|++
T Consensus 96 fvlqdg~qv~ge~~g~~hnitldvrgsdc~ikgiams---gfgpvt----qiy------iggk~prv-----mrnl~id~ 157 (464)
T PRK10123 96 FVLQDGSQVTGEEGGSMHNITLDVRGSDCTIKGLAMS---GFGPVT----QIY------IGGKNKRV-----MRNLTIDN 157 (464)
T ss_pred EEEecCCEeecCCCceeeeEEEeeccCceEEeeeeec---ccCcee----EEE------EcCCCchh-----hhccEEcc
Confidence 10000000000 00111222222111 11110000 000000 000 00112222 27888888
Q ss_pred EEEeCCCCcEEEE----eeeecEEEEeEEEEcCCCCCCCceeeec---CcccEEEEeeEEec-----CCc--eeeec---
Q 038762 163 VRLREPAYWCLHI----VRCDNTFIRDMSIYGDFNTPNNDGIDIE---DSNNTVITRVQIDT-----GDD--AICPK--- 225 (268)
Q Consensus 163 v~i~n~~~~~i~~----~~~~nv~i~~~~i~~~~~~~~~DGi~~~---~~~~v~I~n~~i~~-----gDD--~i~i~--- 225 (268)
+++..+-+ ++.- ...++.+|.++++.. -.+|.|.+. +-+++.|++-.++. |.- +|.++
T Consensus 158 itv~~any-ailrqgfhnq~dgaritn~rfs~----lqgdaiewnvaindr~ilisdhvie~inctngkinwgigiglag 232 (464)
T PRK10123 158 LTVSHANY-AILRQGFHNQIIGANITNCKFSD----LQGDAIEWNVAINDRDILISDHVIERINCTNGKINWGIGIGLAG 232 (464)
T ss_pred EEEeeccH-HHHhhhhhhccccceeecccccc----ccCceEEEEEEecccceeeehheheeecccCCcccceeeeeecc
Confidence 88887632 2222 133556666666654 477888763 34577777766643 111 11111
Q ss_pred CC-------CCCeecEEEEceEEecCCccEEeeeeeeeeEEeEEEEeeE
Q 038762 226 TY-------TGPLYNLTATDSWIRTKSSAIKLGSASWFDFKALVFDNIT 267 (268)
Q Consensus 226 s~-------~~~~~nv~v~n~~~~~~~~gi~ig~~~~~~~~ni~~~ni~ 267 (268)
|. ...+.|.+|-|.+-.++..-+.+-......|+|+..+|||
T Consensus 233 stydn~ype~q~vknfvvanitgs~crqlvhvengkhfvirnvkaknit 281 (464)
T PRK10123 233 STYDNNYPEDQAVKNFVVANITGSDCRQLIHVENGKHFVIRNIKAKNIT 281 (464)
T ss_pred ccccCCCchhhhhhhEEEEeccCcChhheEEecCCcEEEEEeeeccccC
Confidence 11 1247788888777666544467777777788888888875
No 61
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=97.75 E-value=0.0037 Score=59.11 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=31.4
Q ss_pred hHHHHHHHHHhCCCCC-CCcEEEECCCeEEEeeEEec---CceEEEEcC
Q 038762 30 DTAAIQSAIDACPPGN-KPCQVRFPPGEYLTATIRLK---SHVTLNIHE 74 (268)
Q Consensus 30 ~t~aiq~Ai~~~~~~~-~g~~v~ip~G~Y~~~~l~l~---s~~~l~~~~ 74 (268)
+-..||+||++++... ..-+|+|.||+|. ..+.++ .+++|++++
T Consensus 296 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~-E~V~I~~~k~~i~l~G~g 343 (596)
T PLN02745 296 NFTTISDALAAMPAKYEGRYVIYVKQGIYD-ETVTVDKKMVNVTMYGDG 343 (596)
T ss_pred CcccHHHHHHhccccCCceEEEEEeCCeeE-EEEEEcCCCceEEEEecC
Confidence 4789999999987721 2247999999996 344443 477887764
No 62
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=97.73 E-value=0.0022 Score=60.05 Aligned_cols=47 Identities=23% Similarity=0.343 Sum_probs=32.8
Q ss_pred CCCchhHHHHHHHHHhCCCCCCC--cEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPGNKP--CQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~~~g--~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
||. -+-.-||+||++++. ... -+|+|.||+|. +.+.+ +.+++|.+++
T Consensus 237 dGs-G~f~TIq~Ai~a~p~-~~~~r~vI~Ik~GvY~-E~V~i~~~k~~i~l~G~g 288 (541)
T PLN02416 237 DGT-GNFSTITDAINFAPN-NSNDRIIIYVREGVYE-ENVEIPIYKTNIVLIGDG 288 (541)
T ss_pred CCC-CCccCHHHHHHhhhh-cCCceEEEEEeCceeE-EEEecCCCCccEEEEecC
Confidence 443 347899999999876 322 37899999995 34444 3578887763
No 63
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.72 E-value=0.00068 Score=55.49 Aligned_cols=110 Identities=11% Similarity=0.006 Sum_probs=54.8
Q ss_pred eEEEEeccccEEEEeEEEeCC--------CCcEEEEe-eeecEEEEeEEEEcCCCC---CCCceeeecCcccEEEEeeEE
Q 038762 148 RLVGFLGCRNVNVWNVRLREP--------AYWCLHIV-RCDNTFIRDMSIYGDFNT---PNNDGIDIEDSNNTVITRVQI 215 (268)
Q Consensus 148 ~~i~~~~~~nv~I~~v~i~n~--------~~~~i~~~-~~~nv~i~~~~i~~~~~~---~~~DGi~~~~~~~v~I~n~~i 215 (268)
-++.+..++||.|++|++... .-..+.+. .++++||+++.+...... ...|......+.++++.++.|
T Consensus 76 Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f 155 (200)
T PF00544_consen 76 DAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYF 155 (200)
T ss_dssp -SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EE
T ss_pred CeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEEeEEE
Confidence 457777777777777777765 33334443 467777777777642110 012222222335677777777
Q ss_pred ec--CCceeeecCCCCCeecEEEEceEEe-cCCccEEeeeeeeeeEEeEEE
Q 038762 216 DT--GDDAICPKTYTGPLYNLTATDSWIR-TKSSAIKLGSASWFDFKALVF 263 (268)
Q Consensus 216 ~~--gDD~i~i~s~~~~~~nv~v~n~~~~-~~~~gi~ig~~~~~~~~ni~~ 263 (268)
.+ +.-. .++. ..+.+.||.+. ....++..+......+|+..|
T Consensus 156 ~~~~~R~P-~~r~-----G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 156 ANTNSRNP-RVRF-----GYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp EEEEE-TT-EECS-----CEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred CchhhCCC-cccc-----cEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 54 1111 1211 24667777554 345566666555555555443
No 64
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=97.67 E-value=0.0044 Score=58.00 Aligned_cols=48 Identities=21% Similarity=0.233 Sum_probs=33.4
Q ss_pred CCCchhHHHHHHHHHhCCCC---CCCcEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPG---NKPCQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~---~~g~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
||. -+-.-||+||++++.. ...-+|+|.||+|.- .+.+ +.+++|.+++
T Consensus 230 dGs-G~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~E-~V~i~~~k~~i~l~G~g 283 (539)
T PLN02995 230 DGS-GHFNTVQAAIDVAGRRKVTSGRFVIYVKRGIYQE-NINVRLNNDDIMLVGDG 283 (539)
T ss_pred CCC-CCccCHHHHHHhcccccCCCceEEEEEeCCEeEE-EEEecCCCCcEEEEEcC
Confidence 443 3577999999998741 223579999999953 3444 4588888874
No 65
>PLN02197 pectinesterase
Probab=97.66 E-value=0.0036 Score=59.03 Aligned_cols=47 Identities=26% Similarity=0.502 Sum_probs=32.7
Q ss_pred CCCchhHHHHHHHHHhCCCCCCC--cEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPGNKP--CQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~~~g--~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
||. -+-..||+||++++. ... -+|+|.||+|. +.+.+ +.+++|++++
T Consensus 282 dGs-G~f~TIq~Ai~a~P~-~~~~r~vI~Ik~GvY~-E~V~I~~~k~ni~l~G~g 333 (588)
T PLN02197 282 DGS-GQFKTISQAVMACPD-KNPGRCIIHIKAGIYN-EQVTIPKKKNNIFMFGDG 333 (588)
T ss_pred CCC-CCcCCHHHHHHhccc-cCCceEEEEEeCceEE-EEEEccCCCceEEEEEcC
Confidence 443 347799999999977 322 36899999995 34444 3477887764
No 66
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=97.56 E-value=0.01 Score=55.20 Aligned_cols=48 Identities=23% Similarity=0.301 Sum_probs=33.3
Q ss_pred CCCchhHHHHHHHHHhCCCC-CCCcEEEECCCeEEEeeEEec---CceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPG-NKPCQVRFPPGEYLTATIRLK---SHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~-~~g~~v~ip~G~Y~~~~l~l~---s~~~l~~~~ 74 (268)
||. -+-..||+||++++.. ...-+|+|.||+|. ..+.++ .+++|.+++
T Consensus 213 dGs-G~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~-E~V~I~~~k~~i~l~G~g 264 (520)
T PLN02201 213 DGT-GNFTTIMDAVLAAPDYSTKRYVIYIKKGVYL-ENVEIKKKKWNIMMVGDG 264 (520)
T ss_pred CCC-CCccCHHHHHHhchhcCCCcEEEEEeCceeE-EEEEecCCCceEEEEecC
Confidence 453 3578999999999762 12348999999995 444543 467777763
No 67
>PLN02916 pectinesterase family protein
Probab=97.54 E-value=0.012 Score=54.36 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=32.5
Q ss_pred CCCchhHHHHHHHHHhCCCC----CCCcEEEECCCeEEEeeEEec---CceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPG----NKPCQVRFPPGEYLTATIRLK---SHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~----~~g~~v~ip~G~Y~~~~l~l~---s~~~l~~~~ 74 (268)
||. -+-.-||+||+++++. ...-+|+|.||+|. ..+.++ .+++|.+++
T Consensus 194 dGs-G~f~TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~-E~V~I~~~k~~i~l~G~g 248 (502)
T PLN02916 194 DGS-GTHRTINQALAALSRMGKSRTNRVIIYVKAGVYN-EKVEIDRHMKNVMFVGDG 248 (502)
T ss_pred CCC-CCccCHHHHHHhcccccCCCCceEEEEEeCceee-EEEEecCCCceEEEEecC
Confidence 443 3467899999998740 12247999999996 444443 467787763
No 68
>PLN02314 pectinesterase
Probab=97.52 E-value=0.0086 Score=56.73 Aligned_cols=43 Identities=21% Similarity=0.326 Sum_probs=30.8
Q ss_pred hHHHHHHHHHhCCCCCC--CcEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 30 DTAAIQSAIDACPPGNK--PCQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 30 ~t~aiq~Ai~~~~~~~~--g~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
+-.-||+||++++. .. --+|+|.||+|. +.+.+ +.+++|.+++
T Consensus 289 ~f~TI~~Av~a~p~-~~~~r~vI~ik~G~Y~-E~V~i~~~k~~i~l~G~g 336 (586)
T PLN02314 289 DVKTINEAVASIPK-KSKSRFVIYVKEGTYV-ENVLLDKSKWNVMIYGDG 336 (586)
T ss_pred CccCHHHHHhhccc-cCCceEEEEEcCceEE-EEEEecCCCceEEEEecC
Confidence 46789999999977 32 237999999995 34444 3467777764
No 69
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=97.51 E-value=0.0059 Score=58.30 Aligned_cols=43 Identities=19% Similarity=0.320 Sum_probs=30.4
Q ss_pred hHHHHHHHHHhCCCCCC--CcEEEECCCeEEEeeEEec---CceEEEEcC
Q 038762 30 DTAAIQSAIDACPPGNK--PCQVRFPPGEYLTATIRLK---SHVTLNIHE 74 (268)
Q Consensus 30 ~t~aiq~Ai~~~~~~~~--g~~v~ip~G~Y~~~~l~l~---s~~~l~~~~ 74 (268)
+-.-||+||++++. .. .-+|+|.+|+|.- .+.++ .+++|.+++
T Consensus 261 ~f~TIq~Av~a~P~-~~~~r~vI~Ik~GvY~E-~V~I~~~k~~i~l~Gdg 308 (670)
T PLN02217 261 QYKTINEALNFVPK-KKNTTFVVHIKAGIYKE-YVQVNRSMTHLVFIGDG 308 (670)
T ss_pred CccCHHHHHHhccc-cCCceEEEEEeCCceEE-EEEEcCCCCcEEEEecC
Confidence 47899999999977 22 2379999999953 44443 366677663
No 70
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=97.49 E-value=0.0083 Score=56.55 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=32.5
Q ss_pred CCCchhHHHHHHHHHhCCCC-CCCcEEEECCCeEEEeeEEec---CceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPG-NKPCQVRFPPGEYLTATIRLK---SHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~-~~g~~v~ip~G~Y~~~~l~l~---s~~~l~~~~ 74 (268)
||.. +-.-||+||++++.. ...-+|+|.||+|. +.+.++ .+++|.+++
T Consensus 265 dGsg-~f~tI~~Av~a~p~~~~~~~vI~ik~GvY~-E~V~i~~~k~~i~~~G~g 316 (565)
T PLN02468 265 DGSG-KYKTISEALKDVPEKSEKRTIIYVKKGVYF-ENVRVEKKKWNVVMVGDG 316 (565)
T ss_pred CCCC-CccCHHHHHHhchhcCCCcEEEEEeCCceE-EEEEecCCCCeEEEEecC
Confidence 4533 358999999998762 12348999999995 344442 467777763
No 71
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=97.46 E-value=0.012 Score=55.49 Aligned_cols=47 Identities=26% Similarity=0.404 Sum_probs=33.2
Q ss_pred CCCchhHHHHHHHHHhCCCCCC--CcEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPGNK--PCQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~~~--g~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
||.. +-..||+||++++. .. --+|+|.||+|. ..+.+ +.+++|.+++
T Consensus 266 dGsG-~f~TIq~Av~a~p~-~~~~r~vI~Ik~GvY~-E~V~i~~~k~~i~l~G~g 317 (572)
T PLN02990 266 DGSG-QYKTINEALNAVPK-ANQKPFVIYIKQGVYN-EKVDVTKKMTHVTFIGDG 317 (572)
T ss_pred CCCC-CCcCHHHHHhhCcc-cCCceEEEEEeCceeE-EEEEecCCCCcEEEEecC
Confidence 4533 46789999999977 32 237999999995 34444 3578888773
No 72
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=97.45 E-value=0.0092 Score=56.49 Aligned_cols=47 Identities=19% Similarity=0.358 Sum_probs=32.4
Q ss_pred CCCchhHHHHHHHHHhCCCCCCC--cEEEECCCeEEEeeEEe---cCceEEEEcC
Q 038762 25 DGIHYDTAAIQSAIDACPPGNKP--CQVRFPPGEYLTATIRL---KSHVTLNIHE 74 (268)
Q Consensus 25 dg~~d~t~aiq~Ai~~~~~~~~g--~~v~ip~G~Y~~~~l~l---~s~~~l~~~~ 74 (268)
||.. +-..||+||++++. ... -+|+|.||+|. ..+.+ +.+++|.+++
T Consensus 282 dGsG-~f~TI~~Av~a~p~-~~~~r~vI~ik~GvY~-E~V~i~~~k~ni~l~Gdg 333 (587)
T PLN02313 282 DGSG-DFTTVAAAVAAAPE-KSNKRFVIHIKAGVYR-ENVEVTKKKKNIMFLGDG 333 (587)
T ss_pred CCCC-CCccHHHHHHhccc-cCCceEEEEEeCceeE-EEEEeCCCCCeEEEEecC
Confidence 4433 46799999999987 332 38999999995 33444 3467777763
No 73
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=96.72 E-value=0.014 Score=49.12 Aligned_cols=92 Identities=16% Similarity=0.183 Sum_probs=69.2
Q ss_pred EEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEec-CCceeeecCC--CCCeecEEEEceEEecCCccEE
Q 038762 173 LHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDT-GDDAICPKTY--TGPLYNLTATDSWIRTKSSAIK 249 (268)
Q Consensus 173 i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~-gDD~i~i~s~--~~~~~nv~v~n~~~~~~~~gi~ 249 (268)
+.+....+.+|++++|.++.. ...-|+.+.++ +.+|+||+|.+ +.++|.+... .....+++|+.+.+.....||.
T Consensus 91 ~tI~~~~~~~i~GvtItN~n~-~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~Gi~ 168 (246)
T PF07602_consen 91 VTIILANNATISGVTITNPNI-ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIYFNKTGIS 168 (246)
T ss_pred EEEEecCCCEEEEEEEEcCCC-CcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEeecceEEecCcCeE
Confidence 344556677899999998521 35678888876 99999999988 7788987654 3578889999999998888998
Q ss_pred eeeeeee---eEEeEEEEee
Q 038762 250 LGSASWF---DFKALVFDNI 266 (268)
Q Consensus 250 ig~~~~~---~~~ni~~~ni 266 (268)
+-..... .++|..+++-
T Consensus 169 i~~~~~~~~n~I~NN~I~~N 188 (246)
T PF07602_consen 169 ISDNAAPVENKIENNIIENN 188 (246)
T ss_pred EEcccCCccceeeccEEEeC
Confidence 8554333 6788777753
No 74
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=96.63 E-value=0.097 Score=45.55 Aligned_cols=110 Identities=14% Similarity=0.103 Sum_probs=60.9
Q ss_pred EEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEec-CCceeeecCC
Q 038762 149 LVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDT-GDDAICPKTY 227 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~-gDD~i~i~s~ 227 (268)
+++...+++..+++-.++... ++++...+.+..+++..... +.-|.-++.+++++|.|+.-.. .|-+|-+.-
T Consensus 174 gIy~~~S~~~~~~gnr~~~~R-ygvHyM~t~~s~i~dn~s~~-----N~vG~ALMys~~l~V~~nrS~Gnrd~Gillny- 246 (408)
T COG3420 174 GIYSDTSQHNVFKGNRFRDLR-YGVHYMYTNDSRISDNSSRD-----NRVGYALMYSDRLKVSDNRSSGNRDHGILLNY- 246 (408)
T ss_pred eEEEcccccceecccchhhee-eeEEEEeccCcEeecccccC-----CcceEEEEEeccEEEEcCcccCccccceeeee-
Confidence 455555555555555555553 36666666666666555543 6667777777777777666544 455554432
Q ss_pred CCCeecEEEEceEEecCCcc--EEeeeeeeeeEEeEEEEeeEC
Q 038762 228 TGPLYNLTATDSWIRTKSSA--IKLGSASWFDFKALVFDNITI 268 (268)
Q Consensus 228 ~~~~~nv~v~n~~~~~~~~g--i~ig~~~~~~~~ni~~~ni~i 268 (268)
.+.=.|.+|...+..+| +-|-.....++++.+|+++.+
T Consensus 247 ---a~~s~i~~N~v~g~~~Gk~vfiyn~~~~ki~~n~feg~~i 286 (408)
T COG3420 247 ---ANYSRIVGNRVAGNVSGKCVFIYNANYNKIRGNSFEGCAI 286 (408)
T ss_pred ---eeccceeccEEEecccceEEEEeccchhhhccceeecceE
Confidence 23333444444334455 334334445777777777653
No 75
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=96.60 E-value=0.0038 Score=39.90 Aligned_cols=38 Identities=39% Similarity=0.558 Sum_probs=23.2
Q ss_pred ccCCCCchhHHHHHHHHHhCCCCCCCcEEEECCC-eEEEeeEE
Q 038762 22 AKGDGIHYDTAAIQSAIDACPPGNKPCQVRFPPG-EYLTATIR 63 (268)
Q Consensus 22 a~~dg~~d~t~aiq~Ai~~~~~~~~g~~v~ip~G-~Y~~~~l~ 63 (268)
|+|||++|||+||.+++++.+. | .++=..| +|.+.++.
T Consensus 1 A~GDGvtdDt~A~~a~l~a~~~---g-~~IDg~GlTykVs~lP 39 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEASPV---G-RKIDGAGLTYKVSSLP 39 (67)
T ss_dssp ---CCCCE-HHHHHHHHHHS-T---T-S-EE-TT-EEEESS--
T ss_pred CCCccccCcHHHHHHHHhccCC---C-eEEecCCceEEEeeCc
Confidence 6899999999999999998754 3 4444455 78777654
No 76
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=96.52 E-value=0.085 Score=45.60 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHhCCCCCC--CcEEEECCCeEEEeeEEec-C--ceEEEEc
Q 038762 29 YDTAAIQSAIDACPPGNK--PCQVRFPPGEYLTATIRLK-S--HVTLNIH 73 (268)
Q Consensus 29 d~t~aiq~Ai~~~~~~~~--g~~v~ip~G~Y~~~~l~l~-s--~~~l~~~ 73 (268)
++-..||+|+|++....+ --.|.+-||.|. +.+.++ + .++|+++
T Consensus 92 ~~f~TIQaAvdaA~~~~~~kr~yI~vk~GvY~-e~v~Vp~~~~~ITLyGe 140 (405)
T COG4677 92 VTFTTIQAAVDAAIIKRTNKRQYIAVKAGVYQ-ETVYVPAAPGGITLYGE 140 (405)
T ss_pred cchHHHHHHHhhhcccCCCceEEEEEccceec-eeEEecCCCCceeEEec
Confidence 567889999998765222 235667899993 444443 2 3777765
No 77
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=96.16 E-value=0.0093 Score=35.98 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=23.3
Q ss_pred EEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEe
Q 038762 172 CLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQID 216 (268)
Q Consensus 172 ~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~ 216 (268)
||.+..+.+.+|++..+.. +.+||++..+++-+|+++.+.
T Consensus 1 GI~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~ 40 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTAS 40 (44)
T ss_pred CEEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEE
Confidence 3455556666666666654 455666666555566555554
No 78
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=95.93 E-value=0.19 Score=41.20 Aligned_cols=96 Identities=15% Similarity=0.186 Sum_probs=56.7
Q ss_pred EEEEeEEEeCCC------CcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecCCCCCe
Q 038762 158 VNVWNVRLREPA------YWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPL 231 (268)
Q Consensus 158 v~I~~v~i~n~~------~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~ 231 (268)
+.|+|++|.... ..++.+..++++.|+++++.+ .+.+|+.+..+....+.+.... .++.+.. ..
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~----~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~---~~ 163 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIEN----SGGDGIYFNTGTDYRIIGSTHV---SGIFIDN---GS 163 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEE---EEEEEES---CE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEc----cCccEEEEEccccCcEeecccc---eeeeecc---ce
Confidence 448888886432 247888889999999999987 4678888775444444333221 0121211 23
Q ss_pred ecEEEEceEEecCCccEEeeeeeeeeEEeEEEE
Q 038762 232 YNLTATDSWIRTKSSAIKLGSASWFDFKALVFD 264 (268)
Q Consensus 232 ~nv~v~n~~~~~~~~gi~ig~~~~~~~~ni~~~ 264 (268)
.++.+.++.+.+...|+..+. ....++|..++
T Consensus 164 ~~~~~~~~~~~~~~~g~~~~~-~~~~i~n~~~~ 195 (225)
T PF12708_consen 164 NNVIVNNCIFNGGDNGIILGN-NNITISNNTFE 195 (225)
T ss_dssp EEEEEECEEEESSSCSEECEE-EEEEEECEEEE
T ss_pred eEEEECCccccCCCceeEeec-ceEEEEeEEEC
Confidence 667788888888777753333 23344444443
No 79
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=95.79 E-value=0.016 Score=34.86 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=34.9
Q ss_pred eeeecCcccEEEEeeEEecCCceeeecCCCCCeecEEEEceEEecC
Q 038762 199 GIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 199 Gi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~ 244 (268)
||+++.+.+.+|+++.+....|||.+.. +++-++++|++...
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~----s~~n~i~~N~~~~n 42 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTD----SSNNTLSNNTASSN 42 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEe----CCCCEeECCEEEcC
Confidence 7888888888899999999777999876 57778888888754
No 80
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=95.30 E-value=0.51 Score=40.32 Aligned_cols=44 Identities=18% Similarity=0.151 Sum_probs=23.7
Q ss_pred eecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEec-CCcee
Q 038762 178 CDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDT-GDDAI 222 (268)
Q Consensus 178 ~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~-gDD~i 222 (268)
.+|.+|+++++.-..+.--..|+|-.- ..+.|.||.|+. ..|+|
T Consensus 150 mrnl~id~itv~~anyailrqgfhnq~-dgaritn~rfs~lqgdai 194 (464)
T PRK10123 150 MRNLTIDNLTVSHANYAILRQGFHNQI-IGANITNCKFSDLQGDAI 194 (464)
T ss_pred hhccEEccEEEeeccHHHHhhhhhhcc-ccceeeccccccccCceE
Confidence 456667776665432222344554322 356677777766 44554
No 81
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=95.01 E-value=1.2 Score=39.88 Aligned_cols=102 Identities=12% Similarity=0.069 Sum_probs=68.7
Q ss_pred EeccccEEEEeEEEeCCC-CcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecCCCCC
Q 038762 152 FLGCRNVNVWNVRLREPA-YWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGP 230 (268)
Q Consensus 152 ~~~~~nv~I~~v~i~n~~-~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~~~~ 230 (268)
+.+-.+|++.|+.|.... .-++.+....++.+.+|.+.+ ..+--+.++ ....|++|.|..---||.- ++
T Consensus 117 V~gM~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~g----f~g~cl~~~--~~~~VrGC~F~~C~~gi~~----~~ 186 (386)
T PF01696_consen 117 VVGMEGVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFG----FHGTCLESW--AGGEVRGCTFYGCWKGIVS----RG 186 (386)
T ss_pred EeeeeeeEEEEEEEecCCccceeEEEecceEEEEeeEEec----CcceeEEEc--CCcEEeeeEEEEEEEEeec----CC
Confidence 344578999999998766 668888899999999999986 333334433 4789999999653333422 34
Q ss_pred eecEEEEceEEecCCccEEeeeeeeeeEEeEEEEe
Q 038762 231 LYNLTATDSWIRTKSSAIKLGSASWFDFKALVFDN 265 (268)
Q Consensus 231 ~~nv~v~n~~~~~~~~gi~ig~~~~~~~~ni~~~n 265 (268)
...+.|++|+|....=|| -++....+++..+.|
T Consensus 187 ~~~lsVk~C~FekC~igi--~s~G~~~i~hn~~~e 219 (386)
T PF01696_consen 187 KSKLSVKKCVFEKCVIGI--VSEGPARIRHNCASE 219 (386)
T ss_pred cceEEeeheeeeheEEEE--EecCCeEEecceecc
Confidence 778889999998654444 333333444444433
No 82
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=94.98 E-value=0.32 Score=39.94 Aligned_cols=66 Identities=9% Similarity=0.009 Sum_probs=36.5
Q ss_pred ceEEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcc-cEEEEeeEEecCCc
Q 038762 147 PRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSN-NTVITRVQIDTGDD 220 (268)
Q Consensus 147 ~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~-~v~I~n~~i~~gDD 220 (268)
.++|.++ +..+|+|+.|-....-+|+... +.+|+|+..+. -..|++.+.+.. .+.|.+.-..+.+|
T Consensus 54 ~~vF~le--~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwed----VcEDA~T~kg~~~~~~I~ggga~~A~D 120 (215)
T PF03211_consen 54 DPVFILE--DGATLKNVIIGANQADGIHCKG--SCTLENVWWED----VCEDAATFKGDGGTVTIIGGGARNASD 120 (215)
T ss_dssp --SEEEE--TTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEE
T ss_pred ceEEEec--CCCEEEEEEEcCCCcCceEEcC--CEEEEEEEecc----cceeeeEEcCCCceEEEeCCcccCCCc
Confidence 3455555 5667777777554445666665 66666666664 456666665544 55555555555333
No 83
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=92.05 E-value=3.5 Score=32.98 Aligned_cols=89 Identities=17% Similarity=0.145 Sum_probs=61.0
Q ss_pred ccEEEEeEEEeCCCCcEEEEeee---------ecEEEEeEEEEcCCC---CCCCceeeecCcccEEEEeeEEec-CCcee
Q 038762 156 RNVNVWNVRLREPAYWCLHIVRC---------DNTFIRDMSIYGDFN---TPNNDGIDIEDSNNTVITRVQIDT-GDDAI 222 (268)
Q Consensus 156 ~nv~I~~v~i~n~~~~~i~~~~~---------~nv~i~~~~i~~~~~---~~~~DGi~~~~~~~v~I~n~~i~~-gDD~i 222 (268)
+++.|-|-+|.+...+||.+... ++|.|.+..|..... ..+..||-..+-.+.+|||+.|.. -.-+|
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai 81 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAI 81 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceE
Confidence 46778888888888888777654 478888888876443 346778888887889999999976 45555
Q ss_pred eec------CCCCCeecEEEEceEEecC
Q 038762 223 CPK------TYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 223 ~i~------s~~~~~~nv~v~n~~~~~~ 244 (268)
+-. +..+.-.-.+|||+.+.++
T Consensus 82 ~~~y~~~~~sp~gsgyttivRNNII~NT 109 (198)
T PF08480_consen 82 AQMYPDYDLSPKGSGYTTIVRNNIIVNT 109 (198)
T ss_pred EEEecccccCCCCCceEEEEEcceEeee
Confidence 532 1112334467777777644
No 84
>PLN02773 pectinesterase
Probab=90.22 E-value=5.3 Score=35.11 Aligned_cols=85 Identities=14% Similarity=0.093 Sum_probs=61.8
Q ss_pred EEeccccEEEEeEEEeCCCCc----EEE-EeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeec
Q 038762 151 GFLGCRNVNVWNVRLREPAYW----CLH-IVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPK 225 (268)
Q Consensus 151 ~~~~~~nv~I~~v~i~n~~~~----~i~-~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~ 225 (268)
.+..++++.++|++|+|+... ++. ....+.+.+.+|++.. ..|-+.... ..-..+||.|+..=|-| ++
T Consensus 97 v~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G-----~QDTL~~~~-gr~yf~~c~IeG~VDFI-FG 169 (317)
T PLN02773 97 VIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLG-----WQDTLYLHY-GKQYLRDCYIEGSVDFI-FG 169 (317)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeec-----ccceeEeCC-CCEEEEeeEEeecccEE-ee
Confidence 444689999999999997321 222 2246889999999997 566665543 35788999999876766 33
Q ss_pred CCCCCeecEEEEceEEecCCcc
Q 038762 226 TYTGPLYNLTATDSWIRTKSSA 247 (268)
Q Consensus 226 s~~~~~~nv~v~n~~~~~~~~g 247 (268)
. ....|++|+++....|
T Consensus 170 ~-----g~a~Fe~c~i~s~~~g 186 (317)
T PLN02773 170 N-----STALLEHCHIHCKSAG 186 (317)
T ss_pred c-----cEEEEEeeEEEEccCc
Confidence 3 5689999999866555
No 85
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=89.94 E-value=2 Score=39.03 Aligned_cols=103 Identities=15% Similarity=0.167 Sum_probs=58.1
Q ss_pred ceEEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecC-----Cce
Q 038762 147 PRLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTG-----DDA 221 (268)
Q Consensus 147 ~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~g-----DD~ 221 (268)
+..+...-+.| ++++=+|++|.+ .+.+..-.+.+|++..+........+-||.+.+. +=+|.|+.|..- +-+
T Consensus 215 ~EIISvKS~~N-~ir~Ntf~es~G-~ltlRHGn~n~V~gN~FiGng~~~~tGGIRIi~~-~H~I~nNY~~gl~g~~~~~~ 291 (425)
T PF14592_consen 215 VEIISVKSSDN-TIRNNTFRESQG-SLTLRHGNRNTVEGNVFIGNGVKEGTGGIRIIGE-GHTIYNNYFEGLTGTRFRGA 291 (425)
T ss_dssp SEEEEEESBT--EEES-EEES-SS-EEEEEE-SS-EEES-EEEE-SSSS-B--EEE-SB-S-EEES-EEEESSB-TTTTS
T ss_pred eeEEEeecCCc-eEeccEEEeccc-eEEEecCCCceEeccEEecCCCcCCCCceEEecC-CcEEEcceeeccccceeecc
Confidence 34555554444 566777888876 7888888888888888876544456789999885 556777787652 222
Q ss_pred eee-----cC---CCCCeecEEEEceEEecCCccEEeee
Q 038762 222 ICP-----KT---YTGPLYNLTATDSWIRTKSSAIKLGS 252 (268)
Q Consensus 222 i~i-----~s---~~~~~~nv~v~n~~~~~~~~gi~ig~ 252 (268)
+++ ++ ....+.|++|.+|+|.++..+|.+|.
T Consensus 292 ~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~~~i~~g~ 330 (425)
T PF14592_consen 292 LAVMNGVPNSPLNRYDQVKNVLIANNTFINCKSPIHFGA 330 (425)
T ss_dssp EE-EEE--BSTTSTT---BSEEEES-EEES-SEEEESST
T ss_pred eeeccCCCCCCcccccccceeEEecceEEccCCceEEcc
Confidence 321 11 12368999999999999888888876
No 86
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=87.40 E-value=13 Score=30.66 Aligned_cols=38 Identities=11% Similarity=-0.093 Sum_probs=19.2
Q ss_pred EEEEeccccEEEEeEEEeCCCCcEEEEeeee-cEEEEeEEE
Q 038762 149 LVGFLGCRNVNVWNVRLREPAYWCLHIVRCD-NTFIRDMSI 188 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~-nv~i~~~~i 188 (268)
+++... +.+|+||..++-...++.+.... .++|.+--.
T Consensus 77 GIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga 115 (215)
T PF03211_consen 77 GIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGA 115 (215)
T ss_dssp -EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEE
T ss_pred ceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcc
Confidence 455554 56666666666555555555544 344443333
No 87
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=86.21 E-value=8.4 Score=36.61 Aligned_cols=82 Identities=13% Similarity=0.053 Sum_probs=59.7
Q ss_pred EEEeccccEEEEeEEEeCCCC----cEEEEe-eeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeee
Q 038762 150 VGFLGCRNVNVWNVRLREPAY----WCLHIV-RCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICP 224 (268)
Q Consensus 150 i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i 224 (268)
-.....+++..+|++|+|..+ -++.+. .++...+.+|+|.+ ..|-+..... .-..++|.|++.=|-| +
T Consensus 324 T~~v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G-----~QDTLy~~~~-rq~y~~C~I~GtVDFI-F 396 (553)
T PLN02708 324 TVGVLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLG-----NQDTLYAHSL-RQFYKSCRIQGNVDFI-F 396 (553)
T ss_pred EEEEEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeee-----ccccceeCCC-ceEEEeeEEeecCCEE-e
Confidence 334457899999999999653 233333 46789999999997 5565655443 4578999999876766 3
Q ss_pred cCCCCCeecEEEEceEEec
Q 038762 225 KTYTGPLYNLTATDSWIRT 243 (268)
Q Consensus 225 ~s~~~~~~nv~v~n~~~~~ 243 (268)
+. ....|+||++..
T Consensus 397 G~-----a~avfq~c~i~~ 410 (553)
T PLN02708 397 GN-----SAAVFQDCAILI 410 (553)
T ss_pred cC-----ceEEEEccEEEE
Confidence 33 689999999984
No 88
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=85.34 E-value=9.4 Score=36.39 Aligned_cols=81 Identities=12% Similarity=0.000 Sum_probs=59.0
Q ss_pred EeccccEEEEeEEEeCCCC----cEEE-EeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecC
Q 038762 152 FLGCRNVNVWNVRLREPAY----WCLH-IVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKT 226 (268)
Q Consensus 152 ~~~~~nv~I~~v~i~n~~~----~~i~-~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s 226 (268)
....+++..+|++|+|..+ -++. -..++...+.+|++.+ ..|-+..... .-..++|.|++.=|-| ++
T Consensus 336 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G-----~QDTLy~~~~-Rqyy~~C~I~GtVDFI-FG- 407 (566)
T PLN02713 336 AVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEA-----YQDTLYTHSL-RQFYRECDIYGTVDFI-FG- 407 (566)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeecc-----CCcceEECCC-CEEEEeeEEeccccee-cc-
Confidence 3456999999999999642 1232 2356789999999997 5666665543 5688999999876666 33
Q ss_pred CCCCeecEEEEceEEecC
Q 038762 227 YTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 227 ~~~~~~nv~v~n~~~~~~ 244 (268)
...+.|+||.+...
T Consensus 408 ----~a~avfq~C~i~~~ 421 (566)
T PLN02713 408 ----NAAVVFQNCNLYPR 421 (566)
T ss_pred ----cceEEEeccEEEEe
Confidence 36889999999753
No 89
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=84.98 E-value=9.6 Score=30.54 Aligned_cols=84 Identities=21% Similarity=0.153 Sum_probs=51.8
Q ss_pred ecEEEEeEEEEcCCCCCCCceeeecC---------cccEEEEeeEEec-CCce-eeecC--CCCCeecEEEEceEEecCC
Q 038762 179 DNTFIRDMSIYGDFNTPNNDGIDIED---------SNNTVITRVQIDT-GDDA-ICPKT--YTGPLYNLTATDSWIRTKS 245 (268)
Q Consensus 179 ~nv~i~~~~i~~~~~~~~~DGi~~~~---------~~~v~I~n~~i~~-gDD~-i~i~s--~~~~~~nv~v~n~~~~~~~ 245 (268)
++|+|.|..|.. ...-||-+.+ .++|+|+++.|.. |-.. +..-. -..+.+|-+|||++|.+..
T Consensus 2 ~dIEIYnN~I~~----T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y 77 (198)
T PF08480_consen 2 DDIEIYNNTIYN----TYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVY 77 (198)
T ss_pred CceEEecceeec----ccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccc
Confidence 578888988887 4566666643 3589999999864 3211 11000 0125789999999999875
Q ss_pred cc-EEe----------eeeeeeeEEeEEEEee
Q 038762 246 SA-IKL----------GSASWFDFKALVFDNI 266 (268)
Q Consensus 246 ~g-i~i----------g~~~~~~~~ni~~~ni 266 (268)
++ |.- |+...-.++|..+.|.
T Consensus 78 ~aai~~~y~~~~~sp~gsgyttivRNNII~NT 109 (198)
T PF08480_consen 78 HAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNT 109 (198)
T ss_pred cceEEEEecccccCCCCCceEEEEEcceEeee
Confidence 53 432 2334446666666553
No 90
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=84.80 E-value=8 Score=36.25 Aligned_cols=39 Identities=13% Similarity=0.160 Sum_probs=26.9
Q ss_pred eccccEEEEeEEEeCCCCc----EEEEe-eeecEEEEeEEEEcC
Q 038762 153 LGCRNVNVWNVRLREPAYW----CLHIV-RCDNTFIRDMSIYGD 191 (268)
Q Consensus 153 ~~~~nv~I~~v~i~n~~~~----~i~~~-~~~nv~i~~~~i~~~ 191 (268)
...+++..+|++|+|..+. ++.+. ..+...+.+|++.+.
T Consensus 267 v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~ 310 (497)
T PLN02698 267 ITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGY 310 (497)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecc
Confidence 4568999999999986532 22222 467788888888763
No 91
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=84.63 E-value=9.4 Score=36.12 Aligned_cols=84 Identities=15% Similarity=0.075 Sum_probs=60.0
Q ss_pred EEEEeccccEEEEeEEEeCCCCc----EEEE-eeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceee
Q 038762 149 LVGFLGCRNVNVWNVRLREPAYW----CLHI-VRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAIC 223 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~~~----~i~~-~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~ 223 (268)
+-.....+++..+|++|+|..+. .+.+ ...+...+.+|++.+ ..|-+..... .-..++|.|++.=|-|
T Consensus 312 aT~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G-----~QDTLy~~~~-rqyy~~C~I~GtVDFI- 384 (537)
T PLN02506 312 ATVAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEG-----YQDTLYAHSL-RQFYRECEIYGTIDFI- 384 (537)
T ss_pred eEEEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeec-----ccccceecCC-ceEEEeeEEecccceE-
Confidence 34456789999999999987422 2222 247889999999987 5555554443 4688999999876665
Q ss_pred ecCCCCCeecEEEEceEEecC
Q 038762 224 PKTYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 224 i~s~~~~~~nv~v~n~~~~~~ 244 (268)
++. ....|+||++...
T Consensus 385 FG~-----a~avfq~C~i~~r 400 (537)
T PLN02506 385 FGN-----GAAVLQNCKIYTR 400 (537)
T ss_pred ccC-----ceeEEeccEEEEc
Confidence 333 5689999999853
No 92
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=84.53 E-value=11 Score=35.82 Aligned_cols=83 Identities=12% Similarity=0.007 Sum_probs=59.7
Q ss_pred EEEEeccccEEEEeEEEeCCCC----cEEEEe-eeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceee
Q 038762 149 LVGFLGCRNVNVWNVRLREPAY----WCLHIV-RCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAIC 223 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~ 223 (268)
+-.....+++..+|++|+|..+ -++.+. .++...+.+|+|.+ ..|-+.... ..-..++|.|++.=|-|
T Consensus 306 aT~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~g-----yQDTLy~~~-~rq~y~~c~I~GtVDFI- 378 (538)
T PLN03043 306 STFAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEG-----YQDTLYVHS-LRQFYRECDIYGTVDFI- 378 (538)
T ss_pred eEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEec-----cCcccccCC-CcEEEEeeEEeeccceE-
Confidence 3444567999999999999643 233333 46779999999997 555555544 34688999999876665
Q ss_pred ecCCCCCeecEEEEceEEec
Q 038762 224 PKTYTGPLYNLTATDSWIRT 243 (268)
Q Consensus 224 i~s~~~~~~nv~v~n~~~~~ 243 (268)
++. ....|+||++..
T Consensus 379 FG~-----a~avfq~c~i~~ 393 (538)
T PLN03043 379 FGN-----AAAIFQNCNLYA 393 (538)
T ss_pred eec-----ceeeeeccEEEE
Confidence 333 678999999975
No 93
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=84.47 E-value=22 Score=32.50 Aligned_cols=30 Identities=23% Similarity=0.166 Sum_probs=25.0
Q ss_pred CcEEEECCCeEEEeeEEecCceEEEEcCCe
Q 038762 47 PCQVRFPPGEYLTATIRLKSHVTLNIHEDA 76 (268)
Q Consensus 47 g~~v~ip~G~Y~~~~l~l~s~~~l~~~~ga 76 (268)
...+++-+|+|....+.+.|++.+.++.+.
T Consensus 48 e~LIFlH~G~~e~~~i~I~sdvqiiGAs~~ 77 (625)
T KOG1777|consen 48 EKLIFLHEGTHETETIRITSDVQIIGASPS 77 (625)
T ss_pred cceEEEEeccccceEEEEcCCeeEeccCCc
Confidence 668889999999889999999988877543
No 94
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=83.63 E-value=10 Score=35.92 Aligned_cols=82 Identities=13% Similarity=0.054 Sum_probs=58.5
Q ss_pred EEeccccEEEEeEEEeCCCCc----EEEE-eeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeec
Q 038762 151 GFLGCRNVNVWNVRLREPAYW----CLHI-VRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPK 225 (268)
Q Consensus 151 ~~~~~~nv~I~~v~i~n~~~~----~i~~-~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~ 225 (268)
.....+++..+|++|+|..+. ++.+ ..++...+.+|++.+ ..|-+.... ..-..++|.|++.=|-| ++
T Consensus 312 ~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G-----~QDTLy~~~-~Rqyy~~C~I~GtVDFI-FG 384 (541)
T PLN02416 312 LAVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTING-----YQDTLYVHS-FRQFYRECDIYGTIDYI-FG 384 (541)
T ss_pred EEEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEec-----ccchhccCC-CceEEEeeEEeecccee-ec
Confidence 344589999999999986432 2222 246889999999997 455554443 35688999999876665 33
Q ss_pred CCCCCeecEEEEceEEecC
Q 038762 226 TYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 226 s~~~~~~nv~v~n~~~~~~ 244 (268)
. ....|+||++...
T Consensus 385 ~-----a~avfq~c~i~~~ 398 (541)
T PLN02416 385 N-----AAVVFQACNIVSK 398 (541)
T ss_pred c-----ceEEEeccEEEEe
Confidence 3 6789999999753
No 95
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=83.50 E-value=12 Score=35.52 Aligned_cols=84 Identities=11% Similarity=-0.005 Sum_probs=60.2
Q ss_pred EEEEeccccEEEEeEEEeCCCC----cEEEEe-eeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceee
Q 038762 149 LVGFLGCRNVNVWNVRLREPAY----WCLHIV-RCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAIC 223 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~ 223 (268)
+-.....+++..+|++|+|..+ -++.+. .++...+.+|++.+ ..|-+..... .-..++|.|++.=|-|
T Consensus 316 aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G-----~QDTLy~~~~-Rqyy~~C~I~GtVDFI- 388 (548)
T PLN02301 316 ATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDA-----YQDTLYAHSL-RQFYRDSYITGTVDFI- 388 (548)
T ss_pred EEEEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeee-----ccccceecCC-cEEEEeeEEEecccee-
Confidence 3444567999999999998643 233332 46789999999997 5555555443 4588999999876666
Q ss_pred ecCCCCCeecEEEEceEEecC
Q 038762 224 PKTYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 224 i~s~~~~~~nv~v~n~~~~~~ 244 (268)
++. ....|+||++...
T Consensus 389 FG~-----a~avfq~c~i~~~ 404 (548)
T PLN02301 389 FGN-----AAVVFQNCKIVAR 404 (548)
T ss_pred ccc-----ceeEEeccEEEEe
Confidence 333 6889999999753
No 96
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=83.44 E-value=16 Score=34.38 Aligned_cols=82 Identities=11% Similarity=0.045 Sum_probs=59.2
Q ss_pred EEEeccccEEEEeEEEeCCCC----cEEEEe-eeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeee
Q 038762 150 VGFLGCRNVNVWNVRLREPAY----WCLHIV-RCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICP 224 (268)
Q Consensus 150 i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i 224 (268)
-.....+++..+|++|+|+.+ -++.+. .++...+.+|++.+ +.|-+..... .-..++|.|++.=|-| +
T Consensus 287 T~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G-----~QDTLy~~~~-Rqyy~~C~I~GtVDFI-F 359 (520)
T PLN02201 287 TFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRG-----YQDTLYTHTM-RQFYRECRITGTVDFI-F 359 (520)
T ss_pred EEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeec-----cCCeeEeCCC-CEEEEeeEEeecccEE-e
Confidence 344558999999999998643 233333 46789999999997 5666665543 4567899999876665 3
Q ss_pred cCCCCCeecEEEEceEEec
Q 038762 225 KTYTGPLYNLTATDSWIRT 243 (268)
Q Consensus 225 ~s~~~~~~nv~v~n~~~~~ 243 (268)
+. ....|+||++..
T Consensus 360 G~-----a~avf~~C~i~~ 373 (520)
T PLN02201 360 GD-----ATAVFQNCQILA 373 (520)
T ss_pred cC-----ceEEEEccEEEE
Confidence 33 678999999985
No 97
>PLN02480 Probable pectinesterase
Probab=83.31 E-value=9.4 Score=33.94 Aligned_cols=81 Identities=11% Similarity=0.030 Sum_probs=59.1
Q ss_pred EeccccEEEEeEEEeCCC---------CcEEEE-eeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCce
Q 038762 152 FLGCRNVNVWNVRLREPA---------YWCLHI-VRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDA 221 (268)
Q Consensus 152 ~~~~~nv~I~~v~i~n~~---------~~~i~~-~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~ 221 (268)
....++++++|++|+|+. .-++.+ ..++...|++|++.. ..|-+.... ..-..++|.|+..=|-
T Consensus 128 tV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G-----~QDTLy~~~-gR~yf~~C~IeG~VDF 201 (343)
T PLN02480 128 TVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYS-----THNTLFDYK-GRHYYHSCYIQGSIDF 201 (343)
T ss_pred EEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEec-----ccceeEeCC-CCEEEEeCEEEeeeeE
Confidence 445789999999999972 124444 457889999999987 556555433 3577889999986666
Q ss_pred eeecCCCCCeecEEEEceEEecC
Q 038762 222 ICPKTYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 222 i~i~s~~~~~~nv~v~n~~~~~~ 244 (268)
| ++. ....|++|+++..
T Consensus 202 I-FG~-----g~a~fe~C~i~s~ 218 (343)
T PLN02480 202 I-FGR-----GRSIFHNCEIFVI 218 (343)
T ss_pred E-ccc-----eeEEEEccEEEEe
Confidence 5 333 6789999999854
No 98
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=83.31 E-value=16 Score=27.09 Aligned_cols=68 Identities=13% Similarity=0.050 Sum_probs=49.9
Q ss_pred eccccEEEEeEEEeCCC---CcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEe-eEEecCCceee
Q 038762 153 LGCRNVNVWNVRLREPA---YWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITR-VQIDTGDDAIC 223 (268)
Q Consensus 153 ~~~~nv~I~~v~i~n~~---~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n-~~i~~gDD~i~ 223 (268)
..+.+..+++-.+.+.. .+|+.+..+.+..+.+..+. .. .. .+|++++...+..+.+ .......|++.
T Consensus 73 ~~~~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~-~~-~~-g~G~~~~~~~~~~~~~~~~~~~~~~Gi~ 144 (146)
T smart00722 73 QNTGKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII-TN-ND-GDGNYLSDSSGGDLIGNRIYDNGRDGIA 144 (146)
T ss_pred cCccccEEEcceecCCCccceEEEEEECCccceEecCeEE-ee-cC-CCCEEEeCCCCcEEEcceeEecCCCcEe
Confidence 66777778888777763 78999998888777777776 21 12 8999999888888887 55555666664
No 99
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=83.16 E-value=14 Score=34.59 Aligned_cols=83 Identities=13% Similarity=-0.022 Sum_probs=59.9
Q ss_pred EEEeccccEEEEeEEEeCCCC----cEEEEe-eeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeee
Q 038762 150 VGFLGCRNVNVWNVRLREPAY----WCLHIV-RCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICP 224 (268)
Q Consensus 150 i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i 224 (268)
-.....+++..+|++|+|..+ -++.+. .++...+.+|++.+ ..|-+.... ..-..++|.|++.=|-| +
T Consensus 278 Tv~v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~G-----yQDTLy~~~-~RqyyrdC~I~GtVDFI-F 350 (509)
T PLN02488 278 TVASNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEG-----YQDALYPHR-DRQFYRECFITGTVDFI-C 350 (509)
T ss_pred EEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeec-----cCcceeeCC-CCEEEEeeEEeeccceE-e
Confidence 334457899999999998643 233333 46789999999997 556565443 35688999999876766 3
Q ss_pred cCCCCCeecEEEEceEEecC
Q 038762 225 KTYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 225 ~s~~~~~~nv~v~n~~~~~~ 244 (268)
+. ....|+||++...
T Consensus 351 G~-----a~avFq~C~I~sr 365 (509)
T PLN02488 351 GN-----AAAVFQFCQIVAR 365 (509)
T ss_pred cc-----eEEEEEccEEEEe
Confidence 33 7899999999853
No 100
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=83.05 E-value=11 Score=36.06 Aligned_cols=81 Identities=10% Similarity=-0.018 Sum_probs=58.2
Q ss_pred EEeccccEEEEeEEEeCCCCc----EEEE-eeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeec
Q 038762 151 GFLGCRNVNVWNVRLREPAYW----CLHI-VRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPK 225 (268)
Q Consensus 151 ~~~~~~nv~I~~v~i~n~~~~----~i~~-~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~ 225 (268)
.....+++..+|++|+|..+. ++.+ ..++...+.+|++.+ ..|-+.... ..-..++|.|++.=|-| ++
T Consensus 340 ~~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G-----~QDTLy~~~-~rq~y~~C~I~GtvDFI-FG 412 (565)
T PLN02468 340 FAVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDA-----FQDTLYAHA-QRQFYRECNIYGTVDFI-FG 412 (565)
T ss_pred eeEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEe-----ccchhccCC-CceEEEeeEEeccccee-ec
Confidence 344568999999999986432 3333 357889999999997 455555444 34568999999866665 33
Q ss_pred CCCCCeecEEEEceEEec
Q 038762 226 TYTGPLYNLTATDSWIRT 243 (268)
Q Consensus 226 s~~~~~~nv~v~n~~~~~ 243 (268)
. ....|+||.+..
T Consensus 413 ~-----a~avfq~c~i~~ 425 (565)
T PLN02468 413 N-----SAVVFQNCNILP 425 (565)
T ss_pred c-----ceEEEeccEEEE
Confidence 3 788999999974
No 101
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=81.70 E-value=18 Score=34.79 Aligned_cols=83 Identities=13% Similarity=0.047 Sum_probs=59.7
Q ss_pred EEEeccccEEEEeEEEeCCCC----cEEEE-eeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeee
Q 038762 150 VGFLGCRNVNVWNVRLREPAY----WCLHI-VRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICP 224 (268)
Q Consensus 150 i~~~~~~nv~I~~v~i~n~~~----~~i~~-~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i 224 (268)
-.....+++..+|++|+|..+ -++.+ ..++...+.+|++.+ ..|-+.... ..-..++|.|++.=|-| +
T Consensus 366 T~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G-----~QDTLy~~~-~Rqyy~~C~I~GtVDFI-F 438 (596)
T PLN02745 366 TFVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEG-----YQDTLYAQT-HRQFYRSCVITGTIDFI-F 438 (596)
T ss_pred EEEEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEee-----cccccccCC-CcEEEEeeEEEeeccEE-e
Confidence 334478999999999999643 12322 347889999999997 455554443 35688999999876655 4
Q ss_pred cCCCCCeecEEEEceEEecC
Q 038762 225 KTYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 225 ~s~~~~~~nv~v~n~~~~~~ 244 (268)
+. ....|+||++...
T Consensus 439 G~-----a~avf~~C~i~~~ 453 (596)
T PLN02745 439 GD-----AAAIFQNCLIFVR 453 (596)
T ss_pred cc-----eeEEEEecEEEEe
Confidence 33 7889999999853
No 102
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=81.67 E-value=14 Score=35.51 Aligned_cols=83 Identities=12% Similarity=0.041 Sum_probs=59.3
Q ss_pred EEEEeccccEEEEeEEEeCCCC----cEEEEe-eeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceee
Q 038762 149 LVGFLGCRNVNVWNVRLREPAY----WCLHIV-RCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAIC 223 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~ 223 (268)
+-.....+++..+|++|+|..+ -++.+. ..+...+.+|++.+ ..|-+.... ..-..++|.|++.=|-|
T Consensus 353 aT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G-----~QDTLy~~~-~Rqyy~~C~I~GtVDFI- 425 (587)
T PLN02484 353 ASFAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIG-----YQDTLYVHS-NRQFFRECDIYGTVDFI- 425 (587)
T ss_pred EEEEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEec-----cCcccccCC-CcEEEEecEEEecccee-
Confidence 3445568999999999998643 233333 46789999999997 555555444 34578899999876665
Q ss_pred ecCCCCCeecEEEEceEEec
Q 038762 224 PKTYTGPLYNLTATDSWIRT 243 (268)
Q Consensus 224 i~s~~~~~~nv~v~n~~~~~ 243 (268)
++. ....|+||+++.
T Consensus 426 FG~-----a~avfq~C~i~~ 440 (587)
T PLN02484 426 FGN-----AAVVLQNCSIYA 440 (587)
T ss_pred ccc-----ceeEEeccEEEE
Confidence 333 678999999985
No 103
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=81.49 E-value=10 Score=36.74 Aligned_cols=81 Identities=10% Similarity=0.012 Sum_probs=58.8
Q ss_pred EEeccccEEEEeEEEeCCCC----cEEEEe-eeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeec
Q 038762 151 GFLGCRNVNVWNVRLREPAY----WCLHIV-RCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPK 225 (268)
Q Consensus 151 ~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~ 225 (268)
.....+++..+|++|+|..+ -++.+. ..+...+.+|+|.+ +.|-+.... .+-..++|.|++.=|-| ++
T Consensus 332 ~~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G-----~QDTLy~~~-~Rqyy~~C~I~GtVDFI-FG 404 (670)
T PLN02217 332 VAIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDG-----YQDTLYAHS-HRQFYRDCTISGTIDFL-FG 404 (670)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeee-----ccchhccCC-CcEEEEeCEEEEeccEE-ec
Confidence 33458899999999999643 233333 46889999999997 555555444 35688999999866666 33
Q ss_pred CCCCCeecEEEEceEEec
Q 038762 226 TYTGPLYNLTATDSWIRT 243 (268)
Q Consensus 226 s~~~~~~nv~v~n~~~~~ 243 (268)
. ...+|+||++..
T Consensus 405 ~-----a~avfq~C~I~~ 417 (670)
T PLN02217 405 D-----AAAVFQNCTLLV 417 (670)
T ss_pred C-----ceEEEEccEEEE
Confidence 3 678999999985
No 104
>PLN02314 pectinesterase
Probab=81.41 E-value=15 Score=35.23 Aligned_cols=83 Identities=11% Similarity=-0.017 Sum_probs=59.3
Q ss_pred EEEEeccccEEEEeEEEeCCCCc----EEEE-eeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceee
Q 038762 149 LVGFLGCRNVNVWNVRLREPAYW----CLHI-VRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAIC 223 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~~~----~i~~-~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~ 223 (268)
+-.....+++..+|++|+|..+. ++.+ ..++...+.+|++.+ ..|-+.... ..-..++|.|++.=|-|
T Consensus 358 aT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G-----~QDTLy~~~-~rq~y~~C~I~GtvDFI- 430 (586)
T PLN02314 358 ATFAAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDA-----FQDTLYAHS-NRQFYRDCDITGTIDFI- 430 (586)
T ss_pred EEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEe-----ccchheeCC-CCEEEEeeEEEecccee-
Confidence 33445689999999999986421 2333 356778999999997 556565544 34678899999876665
Q ss_pred ecCCCCCeecEEEEceEEec
Q 038762 224 PKTYTGPLYNLTATDSWIRT 243 (268)
Q Consensus 224 i~s~~~~~~nv~v~n~~~~~ 243 (268)
++. ....|+||.++.
T Consensus 431 FG~-----a~avf~~c~i~~ 445 (586)
T PLN02314 431 FGN-----AAVVFQNCNIQP 445 (586)
T ss_pred ccC-----ceeeeeccEEEE
Confidence 333 678999999985
No 105
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=80.69 E-value=16 Score=34.98 Aligned_cols=83 Identities=10% Similarity=0.057 Sum_probs=59.3
Q ss_pred EEEeccccEEEEeEEEeCCCCc----EEEEe-eeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeee
Q 038762 150 VGFLGCRNVNVWNVRLREPAYW----CLHIV-RCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICP 224 (268)
Q Consensus 150 i~~~~~~nv~I~~v~i~n~~~~----~i~~~-~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i 224 (268)
-.....+++..+|++|+|..+. ++.+. .++...+.+|++.+ ..|-+..... .-..++|.|++.=|-| +
T Consensus 356 t~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g-----~QDTLy~~~~-rq~y~~c~I~GtvDFI-F 428 (587)
T PLN02313 356 TVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFA-----YQDTLYVHSN-RQFFVKCHITGTVDFI-F 428 (587)
T ss_pred EEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEec-----ccchhccCCC-cEEEEeeEEeecccee-c
Confidence 3445678999999999996432 33332 56789999999997 5555554443 4578999999876666 3
Q ss_pred cCCCCCeecEEEEceEEecC
Q 038762 225 KTYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 225 ~s~~~~~~nv~v~n~~~~~~ 244 (268)
+. ....|+||+++..
T Consensus 429 G~-----a~avfq~c~i~~r 443 (587)
T PLN02313 429 GN-----AAAVLQDCDINAR 443 (587)
T ss_pred cc-----eeEEEEccEEEEe
Confidence 33 7889999999843
No 106
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=80.26 E-value=15 Score=35.05 Aligned_cols=80 Identities=11% Similarity=0.111 Sum_probs=57.8
Q ss_pred EeccccEEEEeEEEeCCCC----cEEEEe-eeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecC
Q 038762 152 FLGCRNVNVWNVRLREPAY----WCLHIV-RCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKT 226 (268)
Q Consensus 152 ~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s 226 (268)
....+++..+|++|+|..+ -++.+. .++...+.+|++.+ ..|-+.... ..-..++|.|++.=|-| ++.
T Consensus 343 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G-----~QDTLy~~~-~Rqyy~~C~I~GtVDFI-FG~ 415 (572)
T PLN02990 343 AINGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDG-----YQDTLYVHS-HRQFFRDCTVSGTVDFI-FGD 415 (572)
T ss_pred EEEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEec-----ccchhccCC-CcEEEEeeEEecccceE-ccC
Confidence 3457899999999998643 233333 46789999999997 555555444 34577999999876766 333
Q ss_pred CCCCeecEEEEceEEec
Q 038762 227 YTGPLYNLTATDSWIRT 243 (268)
Q Consensus 227 ~~~~~~nv~v~n~~~~~ 243 (268)
....|+||+++.
T Consensus 416 -----a~avf~~C~i~~ 427 (572)
T PLN02990 416 -----AKVVLQNCNIVV 427 (572)
T ss_pred -----ceEEEEccEEEE
Confidence 678999999974
No 107
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=77.42 E-value=7.5 Score=33.86 Aligned_cols=80 Identities=13% Similarity=0.137 Sum_probs=52.2
Q ss_pred EeccccEEEEeEEEeCCCC------cEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeec
Q 038762 152 FLGCRNVNVWNVRLREPAY------WCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPK 225 (268)
Q Consensus 152 ~~~~~nv~I~~v~i~n~~~------~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~ 225 (268)
....+++.++|++|+|+.+ -++.+ ..+...+.+|++.+ ..|-+.... .+...+||.|+..-|-|- +
T Consensus 83 ~v~a~~f~~~nit~~Nt~g~~~~qAvAl~~-~~d~~~f~~c~~~g-----~QDTL~~~~-~r~y~~~c~IeG~vDFIf-G 154 (298)
T PF01095_consen 83 SVNADDFTAENITFENTAGPSGGQAVALRV-SGDRAAFYNCRFLG-----YQDTLYANG-GRQYFKNCYIEGNVDFIF-G 154 (298)
T ss_dssp EE-STT-EEEEEEEEEHCSGSG----SEEE-T-TSEEEEEEEEE------STT-EEE-S-SEEEEES-EEEESEEEEE-E
T ss_pred cccccceeeeeeEEecCCCCcccceeeeee-cCCcEEEEEeEEcc-----ccceeeecc-ceeEEEeeEEEecCcEEE-C
Confidence 3457999999999998532 23443 56789999999997 567666544 357889999999877763 2
Q ss_pred CCCCCeecEEEEceEEecC
Q 038762 226 TYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 226 s~~~~~~nv~v~n~~~~~~ 244 (268)
. ....|++|++...
T Consensus 155 ~-----~~a~f~~c~i~~~ 168 (298)
T PF01095_consen 155 N-----GTAVFENCTIHSR 168 (298)
T ss_dssp S-----SEEEEES-EEEE-
T ss_pred C-----eeEEeeeeEEEEe
Confidence 2 4668999999853
No 108
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=76.73 E-value=17 Score=34.23 Aligned_cols=84 Identities=12% Similarity=0.054 Sum_probs=59.8
Q ss_pred EEEEeccccEEEEeEEEeCCCCc----EEEE-eeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceee
Q 038762 149 LVGFLGCRNVNVWNVRLREPAYW----CLHI-VRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAIC 223 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~~~----~i~~-~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~ 223 (268)
+-.....+++..+|++|+|..+. ++.+ ...+...+.+|++.+ ..|-+..... .-..++|.|++.=|-|
T Consensus 306 aTv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~G-----yQDTLy~~~~-Rqyy~~C~I~GtVDFI- 378 (529)
T PLN02170 306 ATVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEG-----YQDSLYTHSK-RQFYRETDITGTVDFI- 378 (529)
T ss_pred eEEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEec-----cCCcceeCCC-CEEEEeeEEcccccee-
Confidence 44556689999999999996421 2222 246889999999997 5565655443 4577999999876665
Q ss_pred ecCCCCCeecEEEEceEEecC
Q 038762 224 PKTYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 224 i~s~~~~~~nv~v~n~~~~~~ 244 (268)
++. ....|+||.+...
T Consensus 379 FG~-----a~avFq~C~I~~~ 394 (529)
T PLN02170 379 FGN-----SAVVFQSCNIAAR 394 (529)
T ss_pred ccc-----ceEEEeccEEEEe
Confidence 333 6788999998753
No 109
>PLN02916 pectinesterase family protein
Probab=76.32 E-value=20 Score=33.54 Aligned_cols=83 Identities=11% Similarity=-0.021 Sum_probs=59.4
Q ss_pred EEEEeccccEEEEeEEEeCCCC----cEEEEe-eeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceee
Q 038762 149 LVGFLGCRNVNVWNVRLREPAY----WCLHIV-RCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAIC 223 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~ 223 (268)
+-.....+++..+|++|+|..+ -++.+. .++...+.+|++.+ ..|-+..... .-..++|.|++.=|-|
T Consensus 270 AT~~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G-----~QDTLy~~~~-Rqyy~~C~I~GtVDFI- 342 (502)
T PLN02916 270 ATFGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKG-----YQDTLFVHSL-RQFYRDCHIYGTIDFI- 342 (502)
T ss_pred EEEEEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEec-----cCceeEeCCC-CEEEEecEEeccccee-
Confidence 4445567899999999998642 123333 46789999999997 5666665543 4677999999876665
Q ss_pred ecCCCCCeecEEEEceEEec
Q 038762 224 PKTYTGPLYNLTATDSWIRT 243 (268)
Q Consensus 224 i~s~~~~~~nv~v~n~~~~~ 243 (268)
++. ....|+||+++.
T Consensus 343 FG~-----a~avFq~C~I~~ 357 (502)
T PLN02916 343 FGD-----AAVVFQNCDIFV 357 (502)
T ss_pred ccC-----ceEEEecCEEEE
Confidence 333 678899999874
No 110
>PLN02197 pectinesterase
Probab=75.89 E-value=19 Score=34.55 Aligned_cols=82 Identities=12% Similarity=0.071 Sum_probs=58.9
Q ss_pred EEEeccccEEEEeEEEeCCCC----cEEEEe-eeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeee
Q 038762 150 VGFLGCRNVNVWNVRLREPAY----WCLHIV-RCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICP 224 (268)
Q Consensus 150 i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i 224 (268)
-.....+++..+|++|+|..+ -++.+. .++...+.+|++.+ ..|-+..... .-..++|.|+..=|-| +
T Consensus 358 T~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G-----yQDTLy~~~~-Rqyy~~C~I~GtVDFI-F 430 (588)
T PLN02197 358 TVQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDG-----YQDTLYVNNG-RQFYRNIVVSGTVDFI-F 430 (588)
T ss_pred EEEEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEe-----cCcceEecCC-CEEEEeeEEEeccccc-c
Confidence 344568999999999999643 233333 46889999999997 5666665543 4588999999866665 3
Q ss_pred cCCCCCeecEEEEceEEec
Q 038762 225 KTYTGPLYNLTATDSWIRT 243 (268)
Q Consensus 225 ~s~~~~~~nv~v~n~~~~~ 243 (268)
+. ....|+||++..
T Consensus 431 G~-----a~avfq~C~i~~ 444 (588)
T PLN02197 431 GK-----SATVIQNSLIVV 444 (588)
T ss_pred cc-----eeeeeecCEEEE
Confidence 33 458999999874
No 111
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=74.64 E-value=21 Score=33.78 Aligned_cols=83 Identities=8% Similarity=-0.005 Sum_probs=59.3
Q ss_pred EEEEeccccEEEEeEEEeCCCC----cEEEEe-eeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceee
Q 038762 149 LVGFLGCRNVNVWNVRLREPAY----WCLHIV-RCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAIC 223 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~ 223 (268)
+-.....+++..+|++|+|..+ -++.+. .++...+.+|++.+ ..|-+..... .-..++|.|++.=|-|
T Consensus 298 aT~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G-----~QDTLy~~~~-Rqyy~~C~IeGtVDFI- 370 (530)
T PLN02933 298 ATVGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDG-----YQDTLYVHSA-KQFYRECDIYGTIDFI- 370 (530)
T ss_pred eEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEe-----cccccccCCC-ceEEEeeEEeccccee-
Confidence 3445567899999999998643 233333 46789999999997 5555554443 4588999999876765
Q ss_pred ecCCCCCeecEEEEceEEec
Q 038762 224 PKTYTGPLYNLTATDSWIRT 243 (268)
Q Consensus 224 i~s~~~~~~nv~v~n~~~~~ 243 (268)
++. ....|++|++..
T Consensus 371 FG~-----a~avFq~C~i~~ 385 (530)
T PLN02933 371 FGN-----AAVVFQNCSLYA 385 (530)
T ss_pred ccC-----ceEEEeccEEEE
Confidence 333 568899999874
No 112
>PF14262 DUF4353: Domain of unknown function (DUF4353)
Probab=73.88 E-value=56 Score=27.94 Aligned_cols=38 Identities=16% Similarity=0.319 Sum_probs=24.5
Q ss_pred CCcEEEEC-CCeEEE-ee-----EEec----CceEEEEcCCeeEEeCCCC
Q 038762 46 KPCQVRFP-PGEYLT-AT-----IRLK----SHVTLNIHEDATLLGGPRI 84 (268)
Q Consensus 46 ~g~~v~ip-~G~Y~~-~~-----l~l~----s~~~l~~~~ga~l~~~~~~ 84 (268)
.+.+|.|- +|+|.+ ++ +.+. ..++|.|+ |+.|..+..+
T Consensus 5 ~~~~vtIt~~GtY~lsGs~~~g~i~V~a~~~~~v~lvL~-gv~it~~~~a 53 (264)
T PF14262_consen 5 SGSTVTITKAGTYVLSGSLSDGQIVVDAGDTDKVRLVLD-GVSITNSSGA 53 (264)
T ss_pred eCCEEEEcCCEEEEEEEEccCcEEEEEcCCCceEEEEEC-CeEEeCCCCC
Confidence 36677776 579964 44 3332 46888887 7888775443
No 113
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=72.53 E-value=5.1 Score=19.92 Aligned_cols=9 Identities=22% Similarity=0.213 Sum_probs=3.6
Q ss_pred EEEEeeEEe
Q 038762 208 TVITRVQID 216 (268)
Q Consensus 208 v~I~n~~i~ 216 (268)
++|++|.|.
T Consensus 4 ~~i~~n~i~ 12 (26)
T smart00710 4 VTIENNTIR 12 (26)
T ss_pred EEEECCEEE
Confidence 334444433
No 114
>PLN02682 pectinesterase family protein
Probab=70.54 E-value=32 Score=30.96 Aligned_cols=82 Identities=10% Similarity=0.017 Sum_probs=58.8
Q ss_pred EEEeccccEEEEeEEEeCCCC---------cEEEE-eeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCC
Q 038762 150 VGFLGCRNVNVWNVRLREPAY---------WCLHI-VRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGD 219 (268)
Q Consensus 150 i~~~~~~nv~I~~v~i~n~~~---------~~i~~-~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gD 219 (268)
-.....+++..+|++|+|+.. -++.+ ...+...+.+|++.. ..|-+.... ..-..+||.|+..=
T Consensus 157 T~~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G-----~QDTLy~~~-gRqyf~~C~IeG~V 230 (369)
T PLN02682 157 TFAVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLG-----AQDTLYDHL-GRHYFKDCYIEGSV 230 (369)
T ss_pred EEEEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEec-----cccceEECC-CCEEEEeeEEcccc
Confidence 344567899999999999642 12322 347889999999997 555554433 35788999999876
Q ss_pred ceeeecCCCCCeecEEEEceEEec
Q 038762 220 DAICPKTYTGPLYNLTATDSWIRT 243 (268)
Q Consensus 220 D~i~i~s~~~~~~nv~v~n~~~~~ 243 (268)
|-| ++. ....|++|+++.
T Consensus 231 DFI-FG~-----g~a~Fe~C~I~s 248 (369)
T PLN02682 231 DFI-FGN-----GLSLYEGCHLHA 248 (369)
T ss_pred cEE-ecC-----ceEEEEccEEEE
Confidence 666 333 678999999975
No 115
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=70.31 E-value=23 Score=33.28 Aligned_cols=70 Identities=14% Similarity=0.221 Sum_probs=45.8
Q ss_pred EEeeeecEEEEeEEEEcCCCCCCCceeeec-CcccEEEEeeEEecCCceeeecCCC---------C------CeecEEEE
Q 038762 174 HIVRCDNTFIRDMSIYGDFNTPNNDGIDIE-DSNNTVITRVQIDTGDDAICPKTYT---------G------PLYNLTAT 237 (268)
Q Consensus 174 ~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~-~~~~v~I~n~~i~~gDD~i~i~s~~---------~------~~~nv~v~ 237 (268)
.....+++..+|+.|.+..+......+-+. ......+.+|.|.+..|-+-.++.. | +.....|+
T Consensus 265 ~~v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~~rqyy~~C~I~G~vDFIFG~a~avf~ 344 (497)
T PLN02698 265 FTITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAALRQFYRECDIYGTIDFIFGNAAAVFQ 344 (497)
T ss_pred EEEECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCCCcEEEEeeEEEeccceEecccceeec
Confidence 344668899999999986553333334333 3468899999999877777665531 0 23456777
Q ss_pred ceEEec
Q 038762 238 DSWIRT 243 (268)
Q Consensus 238 n~~~~~ 243 (268)
||++..
T Consensus 345 ~C~i~~ 350 (497)
T PLN02698 345 NCYLFL 350 (497)
T ss_pred ccEEEE
Confidence 777763
No 116
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=69.78 E-value=22 Score=33.77 Aligned_cols=81 Identities=14% Similarity=0.054 Sum_probs=57.8
Q ss_pred EeccccEEEEeEEEeCCCC----cEEEEe-eeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecC
Q 038762 152 FLGCRNVNVWNVRLREPAY----WCLHIV-RCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKT 226 (268)
Q Consensus 152 ~~~~~nv~I~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s 226 (268)
....+++..+|++|+|..+ -++.+. .++...+.+|++.+ +.|-+.... ..-..++|.|++.=|-| ++.
T Consensus 308 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G-----~QDTLy~~~-~Rqyy~~C~I~GtVDFI-FG~ 380 (539)
T PLN02995 308 GIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEG-----YQDTLMVHS-QRQFYRECYIYGTVDFI-FGN 380 (539)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEec-----ccchhccCC-CceEEEeeEEeeccceE-ecc
Confidence 3457899999999998643 233333 46789999999997 455555443 34588999999876665 333
Q ss_pred CCCCeecEEEEceEEecC
Q 038762 227 YTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 227 ~~~~~~nv~v~n~~~~~~ 244 (268)
....|++|++...
T Consensus 381 -----a~avf~~C~i~~~ 393 (539)
T PLN02995 381 -----AAAVFQNCIILPR 393 (539)
T ss_pred -----cceEEeccEEEEe
Confidence 6788999998753
No 117
>PLN02176 putative pectinesterase
Probab=68.06 E-value=36 Score=30.30 Aligned_cols=79 Identities=15% Similarity=0.025 Sum_probs=57.3
Q ss_pred eccccEEEEeEEEeCCCC----------cEE-EEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCce
Q 038762 153 LGCRNVNVWNVRLREPAY----------WCL-HIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDA 221 (268)
Q Consensus 153 ~~~~nv~I~~v~i~n~~~----------~~i-~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~ 221 (268)
..++++..+|++|+|... -++ .....+...+.+|++.. ..|-+.... ..-..++|.|+..=|-
T Consensus 119 v~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G-----~QDTLy~~~-gRqyf~~CyIeG~VDF 192 (340)
T PLN02176 119 SYASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDG-----FQDTLFDGK-GRHYYKRCVISGGIDF 192 (340)
T ss_pred EECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEec-----ccceeEeCC-cCEEEEecEEEecccE
Confidence 358999999999998632 122 22346889999999997 555555443 3678899999987776
Q ss_pred eeecCCCCCeecEEEEceEEec
Q 038762 222 ICPKTYTGPLYNLTATDSWIRT 243 (268)
Q Consensus 222 i~i~s~~~~~~nv~v~n~~~~~ 243 (268)
| ++. ....+++|+++.
T Consensus 193 I-FG~-----a~a~Fe~C~I~s 208 (340)
T PLN02176 193 I-FGY-----AQSIFEGCTLKL 208 (340)
T ss_pred E-ecC-----ceEEEeccEEEE
Confidence 6 233 578999999985
No 118
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=67.48 E-value=1e+02 Score=28.32 Aligned_cols=85 Identities=13% Similarity=0.096 Sum_probs=59.7
Q ss_pred EEEEeccccEEEEeEEEeCCCCc--------EEE-EeeeecEEEEeEEEEcCCCCCCCceeeec-----------CcccE
Q 038762 149 LVGFLGCRNVNVWNVRLREPAYW--------CLH-IVRCDNTFIRDMSIYGDFNTPNNDGIDIE-----------DSNNT 208 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~~~--------~i~-~~~~~nv~i~~~~i~~~~~~~~~DGi~~~-----------~~~~v 208 (268)
.-.....+++..+|++|+|+... .+. ....+...+.+|+|.. ..|-+... ....-
T Consensus 199 ATv~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG-----~QDTLy~~~~~~~~~~~~~~~gRq 273 (422)
T PRK10531 199 AVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILG-----RQDTFFVTNSGVQNRLETDRQPRT 273 (422)
T ss_pred EEEEEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEec-----ccceeeeccccccccccccccccE
Confidence 44556789999999999997431 222 2356789999999997 34444432 11257
Q ss_pred EEEeeEEecCCceeeecCCCCCeecEEEEceEEecC
Q 038762 209 VITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 209 ~I~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~ 244 (268)
..++|.|+..=|-| ++. ...+|++|+|+..
T Consensus 274 Yf~~CyIeG~VDFI-FG~-----g~AvFenC~I~s~ 303 (422)
T PRK10531 274 YVKNSYIEGDVDFV-FGR-----GAVVFDNTEFRVV 303 (422)
T ss_pred EEEeCEEeecccEE-ccC-----ceEEEEcCEEEEe
Confidence 88999999876766 333 5788999999864
No 119
>PLN02432 putative pectinesterase
Probab=67.23 E-value=85 Score=27.31 Aligned_cols=80 Identities=9% Similarity=-0.005 Sum_probs=56.8
Q ss_pred EeccccEEEEeEEEeCCCCc---EEEE-eeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCceeeecCC
Q 038762 152 FLGCRNVNVWNVRLREPAYW---CLHI-VRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTY 227 (268)
Q Consensus 152 ~~~~~nv~I~~v~i~n~~~~---~i~~-~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i~i~s~ 227 (268)
....+++.++|++|+|...- ++.+ ...+...+.+|.+.. ..|-+.... ..-..+||.|+..=|-| ++.
T Consensus 90 ~v~a~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G-----~QDTLy~~~-gr~yf~~c~I~G~VDFI-FG~- 161 (293)
T PLN02432 90 SVLASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILS-----YQDTLLDDT-GRHYYRNCYIEGATDFI-CGN- 161 (293)
T ss_pred EEECCCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEec-----ccceeEECC-CCEEEEeCEEEecccEE-ecC-
Confidence 44568999999999986321 2222 246789999999997 556555433 35688999999876766 233
Q ss_pred CCCeecEEEEceEEec
Q 038762 228 TGPLYNLTATDSWIRT 243 (268)
Q Consensus 228 ~~~~~nv~v~n~~~~~ 243 (268)
....|++|++..
T Consensus 162 ----g~a~Fe~c~i~s 173 (293)
T PLN02432 162 ----AASLFEKCHLHS 173 (293)
T ss_pred ----ceEEEEeeEEEE
Confidence 568999999974
No 120
>PLN02304 probable pectinesterase
Probab=66.48 E-value=45 Score=30.10 Aligned_cols=82 Identities=12% Similarity=0.053 Sum_probs=58.0
Q ss_pred EEeccccEEEEeEEEeCCCC---------cEEEE-eeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCc
Q 038762 151 GFLGCRNVNVWNVRLREPAY---------WCLHI-VRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDD 220 (268)
Q Consensus 151 ~~~~~~nv~I~~v~i~n~~~---------~~i~~-~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD 220 (268)
.....+++..+|++|+|+.. -++.+ ...+...+.+|++.. ..|-+..... .-..++|.|+..=|
T Consensus 157 v~v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G-----~QDTLy~~~g-R~Yf~~CyIeG~VD 230 (379)
T PLN02304 157 VQVFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFG-----AQDTLHDDRG-RHYFKDCYIQGSID 230 (379)
T ss_pred EEEECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEec-----ccceeEeCCC-CEEEEeeEEccccc
Confidence 33447999999999998641 12222 247889999999997 5565554433 56789999998766
Q ss_pred eeeecCCCCCeecEEEEceEEecC
Q 038762 221 AICPKTYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 221 ~i~i~s~~~~~~nv~v~n~~~~~~ 244 (268)
-| ++. ....+++|++...
T Consensus 231 FI-FG~-----g~A~Fe~C~I~s~ 248 (379)
T PLN02304 231 FI-FGD-----ARSLYENCRLISM 248 (379)
T ss_pred EE-ecc-----ceEEEEccEEEEe
Confidence 65 333 5679999999853
No 121
>PLN02665 pectinesterase family protein
Probab=64.80 E-value=50 Score=29.73 Aligned_cols=86 Identities=9% Similarity=0.038 Sum_probs=59.9
Q ss_pred EEEEeccccEEEEeEEEeCCCC---------cEEEE-eeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecC
Q 038762 149 LVGFLGCRNVNVWNVRLREPAY---------WCLHI-VRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTG 218 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~~---------~~i~~-~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~g 218 (268)
.-....++++..+|++|+|+.. -++.+ ...+...+.+|++.. ..|-+.... ..-..++|.|+..
T Consensus 147 aTv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G-----~QDTL~~~~-gr~yf~~CyIeG~ 220 (366)
T PLN02665 147 ATLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIG-----FQDTLCDDK-GRHFFKDCYIEGT 220 (366)
T ss_pred EEEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceecc-----ccceeEeCC-CCEEEEeeEEeec
Confidence 3445568999999999999631 12222 246789999999997 555555433 2567899999987
Q ss_pred CceeeecCCCCCeecEEEEceEEecCCc
Q 038762 219 DDAICPKTYTGPLYNLTATDSWIRTKSS 246 (268)
Q Consensus 219 DD~i~i~s~~~~~~nv~v~n~~~~~~~~ 246 (268)
=|-| ++. ....+++|+++....
T Consensus 221 VDFI-FG~-----g~a~fe~C~i~s~~~ 242 (366)
T PLN02665 221 VDFI-FGS-----GKSLYLNTELHVVGD 242 (366)
T ss_pred ccee-ccc-----cceeeEccEEEEecC
Confidence 6766 233 567999999986543
No 122
>PLN02497 probable pectinesterase
Probab=62.08 E-value=54 Score=29.08 Aligned_cols=80 Identities=14% Similarity=0.066 Sum_probs=56.7
Q ss_pred EeccccEEEEeEEEeCCCCc-----------EEEE-eeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCC
Q 038762 152 FLGCRNVNVWNVRLREPAYW-----------CLHI-VRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGD 219 (268)
Q Consensus 152 ~~~~~nv~I~~v~i~n~~~~-----------~i~~-~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gD 219 (268)
....+++..+|++|+|+... ++.+ ...+...+.+|++.+ ..|-+.... ..-..++|.|+..=
T Consensus 111 ~v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G-----~QDTLy~~~-gRqyf~~C~IeG~V 184 (331)
T PLN02497 111 STLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAG-----VQDTLWDSD-GRHYFKRCTIQGAV 184 (331)
T ss_pred EEecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEec-----cccceeeCC-CcEEEEeCEEEecc
Confidence 45678999999999986431 2222 246789999999997 455554333 35688999999876
Q ss_pred ceeeecCCCCCeecEEEEceEEec
Q 038762 220 DAICPKTYTGPLYNLTATDSWIRT 243 (268)
Q Consensus 220 D~i~i~s~~~~~~nv~v~n~~~~~ 243 (268)
|-| ++. ....|++|++..
T Consensus 185 DFI-FG~-----g~a~Fe~C~I~s 202 (331)
T PLN02497 185 DFI-FGS-----GQSIYESCVIQV 202 (331)
T ss_pred cEE-ccC-----ceEEEEccEEEE
Confidence 665 333 568999999985
No 123
>PLN02634 probable pectinesterase
Probab=61.23 E-value=64 Score=28.93 Aligned_cols=80 Identities=14% Similarity=0.133 Sum_probs=56.4
Q ss_pred eccccEEEEeEEEeCCCC---------cEEE-EeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCCcee
Q 038762 153 LGCRNVNVWNVRLREPAY---------WCLH-IVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAI 222 (268)
Q Consensus 153 ~~~~nv~I~~v~i~n~~~---------~~i~-~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gDD~i 222 (268)
...+++..+|++|+|+.. -++. ....+...+.+|++.. ..|-+.... ..-..++|.|+..=|-|
T Consensus 146 V~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G-----~QDTL~~~~-gR~yf~~CyIeG~VDFI 219 (359)
T PLN02634 146 VYANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYG-----AQDTLCDDA-GRHYFKECYIEGSIDFI 219 (359)
T ss_pred EECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEec-----ccceeeeCC-CCEEEEeeEEcccccEE
Confidence 346899999999998632 1222 2246789999999997 555555433 36788999999876766
Q ss_pred eecCCCCCeecEEEEceEEecC
Q 038762 223 CPKTYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 223 ~i~s~~~~~~nv~v~n~~~~~~ 244 (268)
++. ....|++|+++..
T Consensus 220 -FG~-----g~a~Fe~C~I~s~ 235 (359)
T PLN02634 220 -FGN-----GRSMYKDCELHSI 235 (359)
T ss_pred -cCC-----ceEEEeccEEEEe
Confidence 233 5678999999854
No 124
>PLN02671 pectinesterase
Probab=59.87 E-value=65 Score=28.90 Aligned_cols=84 Identities=12% Similarity=0.108 Sum_probs=58.3
Q ss_pred EEEEeccccEEEEeEEEeCCCC--------cEEEE-eeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecCC
Q 038762 149 LVGFLGCRNVNVWNVRLREPAY--------WCLHI-VRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGD 219 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~~--------~~i~~-~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~gD 219 (268)
+-.....+++..+|++|+|... -++.+ ...+...+.+|++.. ..|-+.... ..-..++|.|+..=
T Consensus 147 aTv~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G-----~QDTLy~~~-gR~yf~~CyIeG~V 220 (359)
T PLN02671 147 ASVTIESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLG-----AQDTLLDET-GSHYFYQCYIQGSV 220 (359)
T ss_pred EEEEEECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEec-----cccccEeCC-CcEEEEecEEEEec
Confidence 3345557899999999999721 12222 246889999999997 455554333 25688999999876
Q ss_pred ceeeecCCCCCeecEEEEceEEecC
Q 038762 220 DAICPKTYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 220 D~i~i~s~~~~~~nv~v~n~~~~~~ 244 (268)
|-| ++. ....|++|+++..
T Consensus 221 DFI-FG~-----g~A~Fe~C~I~s~ 239 (359)
T PLN02671 221 DFI-FGN-----AKSLYQDCVIQST 239 (359)
T ss_pred cEE-ecc-----eeEEEeccEEEEe
Confidence 666 233 5689999999853
No 125
>PHA00672 hypothetical protein
Probab=55.22 E-value=62 Score=24.25 Aligned_cols=27 Identities=30% Similarity=0.513 Sum_probs=16.5
Q ss_pred EEEECCCeEEEeeE-------EecCceEEEEcCC
Q 038762 49 QVRFPPGEYLTATI-------RLKSHVTLNIHED 75 (268)
Q Consensus 49 ~v~ip~G~Y~~~~l-------~l~s~~~l~~~~g 75 (268)
.|.||+|+-+.+.+ .++..++++.+++
T Consensus 51 ei~IPkGt~LtG~~hkf~~~ii~sG~itV~tdge 84 (152)
T PHA00672 51 TIRIPAGVALTGALIKVSTVLIFSGHATVFIGGE 84 (152)
T ss_pred EEeccCceeeeeeeeEeeEEEEecccEEEEeCCc
Confidence 57888888766543 2344566666643
No 126
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=54.34 E-value=84 Score=23.05 Aligned_cols=88 Identities=11% Similarity=0.028 Sum_probs=42.9
Q ss_pred cccEEEEeEEEeCC--CC-------cEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeEEecC--Cceee
Q 038762 155 CRNVNVWNVRLREP--AY-------WCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTG--DDAIC 223 (268)
Q Consensus 155 ~~nv~I~~v~i~n~--~~-------~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~i~~g--DD~i~ 223 (268)
.+++.++++++.++ .+ .++. ..+.+..+++..+..... .+..|+++..+.+..++++.+... .+++.
T Consensus 44 ~~~~~~~G~~~~~~~~~G~~~~~~~~~~~-~~~~~~~i~~N~~~~~~~-~~~~Gi~~~~~~~~~~~~N~i~~~~~g~G~~ 121 (146)
T smart00722 44 SNDVRVDGITIGGSTVTGIYVSASGDGVI-QNTGKNLIIDNVTINGTE-GSGAGIVVTAGSEGLFIGNRIITNNDGDGNY 121 (146)
T ss_pred CCCCEEECeEEEeEEeeCcccccCCceEe-cCccccEEEcceecCCCc-cceEEEEEECCccceEecCeEEeecCCCCEE
Confidence 34557777777652 11 1222 344566666666654211 247778877655554555555410 34554
Q ss_pred ecCCCCCeecEEEEc-eEEecCCccE
Q 038762 224 PKTYTGPLYNLTATD-SWIRTKSSAI 248 (268)
Q Consensus 224 i~s~~~~~~nv~v~n-~~~~~~~~gi 248 (268)
+.. ..+..+++ +.......|+
T Consensus 122 ~~~----~~~~~~~~~~~~~~~~~Gi 143 (146)
T smart00722 122 LSD----SSGGDLIGNRIYDNGRDGI 143 (146)
T ss_pred EeC----CCCcEEEcceeEecCCCcE
Confidence 444 34444444 3343333343
No 127
>PRK09752 adhesin; Provisional
Probab=42.81 E-value=4.3e+02 Score=27.88 Aligned_cols=95 Identities=8% Similarity=0.026 Sum_probs=50.4
Q ss_pred EEEEeccccEEEEeEEEeCCC----CcEEEEeeee-----cEEEEeEEEEcCCCC-CCCceeeecCcccEEEEeeEEecC
Q 038762 149 LVGFLGCRNVNVWNVRLREPA----YWCLHIVRCD-----NTFIRDMSIYGDFNT-PNNDGIDIEDSNNTVITRVQIDTG 218 (268)
Q Consensus 149 ~i~~~~~~nv~I~~v~i~n~~----~~~i~~~~~~-----nv~i~~~~i~~~~~~-~~~DGi~~~~~~~v~I~n~~i~~g 218 (268)
+|+-.....+.|.++.|.+-. +-+|...... .+.|.++.+.+.... ..+-+|... ..++.|.+|.|.+.
T Consensus 114 AIya~~~~~itI~ns~F~nN~A~g~GGAIYa~G~n~~g~v~l~I~NS~F~nN~A~~G~GGAIYs~-ng~vtIsnS~F~nN 192 (1250)
T PRK09752 114 AIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTI-NNDVYLSDVIFDNN 192 (1250)
T ss_pred EEEecCcceeEEeeeEEEccccCCCCCEEEEcccCCCcceEEEEEecEEEccccccCCCCEEEEc-cCcEEEEeeEEeCC
Confidence 343334455778888887421 2245444321 367788877764321 234445543 24788888888642
Q ss_pred C----------ceeeecCCCC------CeecEEEEceEEecC
Q 038762 219 D----------DAICPKTYTG------PLYNLTATDSWIRTK 244 (268)
Q Consensus 219 D----------D~i~i~s~~~------~~~nv~v~n~~~~~~ 244 (268)
- ++=+|..... ...++.|.+|.|.++
T Consensus 193 ~A~~s~s~s~g~GGAIY~~~~~~~~~~~s~~liI~NSsFtnN 234 (1250)
T PRK09752 193 QAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIINNTAFTNN 234 (1250)
T ss_pred cccccccccCCCceEEEeccCCCccccccceEEEeccEEEcc
Confidence 1 2223322111 244677778888754
No 128
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=40.31 E-value=29 Score=28.24 Aligned_cols=27 Identities=15% Similarity=0.301 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHhCCCCCCCcEEEECCCeE
Q 038762 29 YDTAAIQSAIDACPPGNKPCQVRFPPGEY 57 (268)
Q Consensus 29 d~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y 57 (268)
...+++++|.+.+++ +...++||+|+-
T Consensus 83 ~~~~~~~~~~~~L~~--G~~l~IFPEGtr 109 (210)
T cd07986 83 KNRESLREALRHLKN--GGALIIFPAGRV 109 (210)
T ss_pred hhHHHHHHHHHHHhC--CCEEEEECCccc
Confidence 456788888888876 567889999985
No 129
>PF05342 Peptidase_M26_N: M26 IgA1-specific Metallo-endopeptidase N-terminal region; InterPro: IPR008006 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases corresponds to MEROPS peptidase family M26 (clan MA(E)). The active site residues for members of this family and family M4 occur in the motif HEXXH. The type example is IgA1-specific metalloendopeptidase from Streptococcus sanguis (Q59986 from SWISSPROT).; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0016021 integral to membrane
Probab=39.62 E-value=36 Score=28.74 Aligned_cols=7 Identities=43% Similarity=0.899 Sum_probs=3.8
Q ss_pred CCCeEEE
Q 038762 53 PPGEYLT 59 (268)
Q Consensus 53 p~G~Y~~ 59 (268)
|.|+|.+
T Consensus 154 p~Gty~L 160 (250)
T PF05342_consen 154 PSGTYKL 160 (250)
T ss_pred CCceEEE
Confidence 4566643
No 130
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=38.82 E-value=1.2e+02 Score=26.91 Aligned_cols=83 Identities=16% Similarity=0.142 Sum_probs=54.2
Q ss_pred EEeccccEEEEeEEEeCCCCcE---------EEEeeeecEEEEeEEEEcCCCCCCCceeeecCc----------c-cEEE
Q 038762 151 GFLGCRNVNVWNVRLREPAYWC---------LHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDS----------N-NTVI 210 (268)
Q Consensus 151 ~~~~~~nv~I~~v~i~n~~~~~---------i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~----------~-~v~I 210 (268)
.+...+++..+|++++|....+ ......+.+.+++|++.. +.|-+.+..+ + .-.+
T Consensus 184 ~~v~~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg-----~QdTlFv~~~~~~~~~~tn~~~R~yf 258 (405)
T COG4677 184 FWVQNNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLG-----NQDTLFVGNSGVQNRLETNRQPRTYF 258 (405)
T ss_pred heeecCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEee-----ccceEEecCCCCccccccCcchhhhe
Confidence 3455578888899998754332 334467789999999987 3444444332 2 4568
Q ss_pred EeeEEecCCceeeecCCCCCeecEEEEceEEecC
Q 038762 211 TRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTK 244 (268)
Q Consensus 211 ~n~~i~~gDD~i~i~s~~~~~~nv~v~n~~~~~~ 244 (268)
+||.|+..=|-| +++ --.+|.+|.|...
T Consensus 259 tNsyI~GdvDfI-fGs-----gtaVFd~c~i~~~ 286 (405)
T COG4677 259 TNSYIEGDVDFI-FGS-----GTAVFDNCEIQVV 286 (405)
T ss_pred ecceecccceEE-ecc-----ceEEeccceEEEe
Confidence 899998766655 333 4567888887643
No 131
>cd07990 LPLAT_LCLAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as Lysocardiolipin acyltransferase 1 (LCLAT1) or 1-acyl-sn-glycerol-3-phosphate acyltransferase and similar proteins.
Probab=35.90 E-value=35 Score=27.27 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHhCCCC-CCCcEEEECCCeEE
Q 038762 29 YDTAAIQSAIDACPPG-NKPCQVRFPPGEYL 58 (268)
Q Consensus 29 d~t~aiq~Ai~~~~~~-~~g~~v~ip~G~Y~ 58 (268)
.|.+++.++++...+. .+...++||+|+..
T Consensus 86 ~d~~~i~~~~~~l~~~~~~~~lviFPEGTr~ 116 (193)
T cd07990 86 KDEKTIKRQLKRLKDSPEPFWLLIFPEGTRF 116 (193)
T ss_pred HhHHHHHHHHHHHhcCCCCcEEEEeCcccCC
Confidence 4668889999876551 25678999999863
No 132
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=34.84 E-value=32 Score=28.96 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEECCCeE
Q 038762 30 DTAAIQSAIDACPPGNKPCQVRFPPGEY 57 (268)
Q Consensus 30 ~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y 57 (268)
+.+++++|.+.+.+ .+...++||+||-
T Consensus 124 ~~~~l~~~~~~l~~-~g~sv~IFPEGTR 150 (245)
T PRK15018 124 AHGTIAEVVNHFKK-RRISIWMFPEGTR 150 (245)
T ss_pred HHHHHHHHHHHHHh-CCCEEEEECCccC
Confidence 44578888888765 4456899999985
No 133
>PF11429 Colicin_D: Colicin D; InterPro: IPR024440 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). This entry represents a domain found in the C terminus of colicin D, which is responsible for its catalytic activity []. The domain is also found in some S-type pyocins, which are also bacteriocins.; GO: 0004540 ribonuclease activity; PDB: 1TFO_A 1V74_A 1TFK_A.
Probab=33.96 E-value=26 Score=24.74 Aligned_cols=38 Identities=26% Similarity=0.334 Sum_probs=20.8
Q ss_pred EeeeccccC-CCCchhHHHHHHHHHh-CCCCCCCcEEEECCCeEE
Q 038762 16 SVIDFGAKG-DGIHYDTAAIQSAIDA-CPPGNKPCQVRFPPGEYL 58 (268)
Q Consensus 16 ~v~dyga~~-dg~~d~t~aiq~Ai~~-~~~~~~g~~v~ip~G~Y~ 58 (268)
.+.|||..+ +.....-+.|+.||.+ +.. ..+| ..|+|+
T Consensus 8 Ha~DFGi~~~~~N~~t~~~F~~aI~~hi~~---~~tv--~~GtYr 47 (92)
T PF11429_consen 8 HAGDFGITGTNWNKETLEEFEDAIKEHIKN---PDTV--EKGTYR 47 (92)
T ss_dssp GGGGGT------SHHHHHHHHHHHHHHHH----TT-E--E--BET
T ss_pred cccccCcccCCCChhhHHHHHHHHHHHhCC---CCeE--ecccee
Confidence 356899988 6666677899999975 433 4464 499996
No 134
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=32.49 E-value=31 Score=27.14 Aligned_cols=13 Identities=31% Similarity=0.452 Sum_probs=11.6
Q ss_pred CCcEEEECCCeEE
Q 038762 46 KPCQVRFPPGEYL 58 (268)
Q Consensus 46 ~g~~v~ip~G~Y~ 58 (268)
.|+.|++|||.|+
T Consensus 122 kGDlivlPaGiyH 134 (179)
T KOG2107|consen 122 KGDLIVLPAGIYH 134 (179)
T ss_pred cCCEEEecCccee
Confidence 4889999999997
No 135
>cd07988 LPLAT_ABO13168-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Acinetobacter baumannii ATCC 17978 locus ABO13168 putative acyltransferase, and similar proteins.
Probab=32.29 E-value=31 Score=26.92 Aligned_cols=27 Identities=7% Similarity=0.118 Sum_probs=16.8
Q ss_pred HHHHHHHHHhCCCCCCCcEEEECCCeE
Q 038762 31 TAAIQSAIDACPPGNKPCQVRFPPGEY 57 (268)
Q Consensus 31 t~aiq~Ai~~~~~~~~g~~v~ip~G~Y 57 (268)
..+++++++.++++.+...++||+|+-
T Consensus 80 ~~~~~~~~~~l~~g~~~~l~IFPEGtR 106 (163)
T cd07988 80 GGLVEQVVEEFRRREEFVLAIAPEGTR 106 (163)
T ss_pred ccHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 345666666555412235899999984
No 136
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=29.32 E-value=3.4e+02 Score=25.09 Aligned_cols=82 Identities=21% Similarity=0.192 Sum_probs=0.0
Q ss_pred eeeecEEEEeEEEEcCCCCCCCceeeecC------------------------cccEEEEeeEEec-CCceeeecCCCCC
Q 038762 176 VRCDNTFIRDMSIYGDFNTPNNDGIDIED------------------------SNNTVITRVQIDT-GDDAICPKTYTGP 230 (268)
Q Consensus 176 ~~~~nv~i~~~~i~~~~~~~~~DGi~~~~------------------------~~~v~I~n~~i~~-gDD~i~i~s~~~~ 230 (268)
.+|-|..+++..... +.-|||++.. -.+=.|+|...+. ..-++--....+.
T Consensus 261 sRnYnLqF~d~~~i~----~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~lGVG~~~DG~~~y 336 (549)
T PF09251_consen 261 SRNYNLQFRDSVTIS----PVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGSLGVGIGMDGKGGY 336 (549)
T ss_dssp --EBS-EEEEEEEES-----SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES-SSESCEEECCS-E
T ss_pred cceeeEEEeccceEE----EeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheeccceeeeeecCCCce
Q ss_pred eecEEEEceEEecCCccEEeeeeeeeeEEeEEEEee
Q 038762 231 LYNLTATDSWIRTKSSAIKLGSASWFDFKALVFDNI 266 (268)
Q Consensus 231 ~~nv~v~n~~~~~~~~gi~ig~~~~~~~~ni~~~ni 266 (268)
++||++++|.-.+ .+..+.+. .|.||++-++
T Consensus 337 vsni~~~d~~g~G---~~~~~~~~--~ftNitvId~ 367 (549)
T PF09251_consen 337 VSNITVQDCAGAG---IFIRGTNK--VFTNITVIDT 367 (549)
T ss_dssp EEEEEEES-SSES---EEEECCS---EEEEEEEES-
T ss_pred EeeEEeecccCCc---eEEeecCC--ceeeeEEEec
No 137
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=27.60 E-value=39 Score=24.07 Aligned_cols=14 Identities=36% Similarity=0.522 Sum_probs=9.0
Q ss_pred CCCcEEEECCCeEE
Q 038762 45 NKPCQVRFPPGEYL 58 (268)
Q Consensus 45 ~~g~~v~ip~G~Y~ 58 (268)
..|..|++|||.|+
T Consensus 86 ~~Ge~V~i~pg~~H 99 (114)
T PF02373_consen 86 KPGEFVFIPPGAYH 99 (114)
T ss_dssp ETT-EEEE-TT-EE
T ss_pred CCCCEEEECCCceE
Confidence 45789999999985
No 138
>PRK09752 adhesin; Provisional
Probab=27.12 E-value=7.8e+02 Score=26.13 Aligned_cols=70 Identities=10% Similarity=0.042 Sum_probs=42.8
Q ss_pred EEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcc-----cEEEEeeEEecCC----ceeeecCCCCCeecEEEEceEEe
Q 038762 172 CLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSN-----NTVITRVQIDTGD----DAICPKTYTGPLYNLTATDSWIR 242 (268)
Q Consensus 172 ~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~-----~v~I~n~~i~~gD----D~i~i~s~~~~~~nv~v~n~~~~ 242 (268)
+|+......+++.++.+.+......+-.|...+.. .+.|.|+.|.+.. .+=+|.+ ...++.|.||.|.
T Consensus 114 AIya~~~~~itI~ns~F~nN~A~g~GGAIYa~G~n~~g~v~l~I~NS~F~nN~A~~G~GGAIYs---~ng~vtIsnS~F~ 190 (1250)
T PRK09752 114 AIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYT---INNDVYLSDVIFD 190 (1250)
T ss_pred EEEecCcceeEEeeeEEEccccCCCCCEEEEcccCCCcceEEEEEecEEEccccccCCCCEEEE---ccCcEEEEeeEEe
Confidence 55554445589999999875444456677776532 3789999987631 1112222 1245777777777
Q ss_pred cC
Q 038762 243 TK 244 (268)
Q Consensus 243 ~~ 244 (268)
++
T Consensus 191 nN 192 (1250)
T PRK09752 191 NN 192 (1250)
T ss_pred CC
Confidence 54
No 139
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=26.41 E-value=2.7e+02 Score=20.58 Aligned_cols=35 Identities=20% Similarity=0.136 Sum_probs=19.6
Q ss_pred CCcEEEECCCeEE-EeeEEecCceEEEEcCCeeEEeCCC
Q 038762 46 KPCQVRFPPGEYL-TATIRLKSHVTLNIHEDATLLGGPR 83 (268)
Q Consensus 46 ~g~~v~ip~G~Y~-~~~l~l~s~~~l~~~~ga~l~~~~~ 83 (268)
.+..|+||+|... +..- ...=-.|.+ +++|.+.++
T Consensus 11 ~g~~V~I~~g~~v~lD~~-~~~l~~l~I--~G~L~f~~~ 46 (125)
T PF10162_consen 11 AGDNVVIPAGQTVLLDVS-TPKLGSLII--GGTLIFDDD 46 (125)
T ss_pred CCCEEEECCCCEEEEcCC-ChheeEEEE--EEEEEEccC
Confidence 4789999999763 2211 111113444 377887653
No 140
>PRK14014 putative acyltransferase; Provisional
Probab=24.99 E-value=69 Score=27.92 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHhCCCCCCCcEEEECCCeE
Q 038762 29 YDTAAIQSAIDACPPGNKPCQVRFPPGEY 57 (268)
Q Consensus 29 d~t~aiq~Ai~~~~~~~~g~~v~ip~G~Y 57 (268)
.|.+++++|.+...+ .+...+.||+||-
T Consensus 158 ~d~~~~~~a~~~~~~-~~~~l~IFPEGTR 185 (301)
T PRK14014 158 KDLETTRRACEKFKR-MPTTIVNFVEGTR 185 (301)
T ss_pred hHHHHHHHHHHHHhc-CCcEEEEecccee
Confidence 456777888887665 4556899999985
No 141
>PF02187 GAS2: Growth-Arrest-Specific Protein 2 Domain; InterPro: IPR003108 The growth-arrest-specific protein 2 domain is found associated with the spectrin repeat, calponin homology domain and EF hand in many proteins. It is found among others in the growth arrest-specific protein 2 [].; GO: 0007050 cell cycle arrest; PDB: 1V5R_A.
Probab=24.40 E-value=1.9e+02 Score=19.44 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=17.7
Q ss_pred HHHHHHHHHhCCCCCCCcEEEECCCeEEEe
Q 038762 31 TAAIQSAIDACPPGNKPCQVRFPPGEYLTA 60 (268)
Q Consensus 31 t~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~ 60 (268)
.+++++.++.|.-...-....+++|.|.++
T Consensus 4 d~~V~~iv~~C~C~~~f~v~rv~~GkYr~g 33 (73)
T PF02187_consen 4 DDEVRRIVNQCSCPNKFPVERVSEGKYRFG 33 (73)
T ss_dssp HHHHHHHHTS--SSS---EEEEETTEEE-E
T ss_pred HHHHHHHHhcCCCCCceeEEEeCCCceEeC
Confidence 467778887653312356788999999865
No 142
>cd07985 LPLAT_GPAT Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT. Lysophospholipid acyltransferase (LPLAT) superfamily member: glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB). LPLATs are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. This subgroup includes glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB).
Probab=22.59 E-value=69 Score=26.88 Aligned_cols=26 Identities=15% Similarity=0.061 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHhCCCCCCCcE--EEECCCeE
Q 038762 29 YDTAAIQSAIDACPPGNKPCQ--VRFPPGEY 57 (268)
Q Consensus 29 d~t~aiq~Ai~~~~~~~~g~~--v~ip~G~Y 57 (268)
-+..|++.|++.+++ |+. .+||+|+-
T Consensus 99 ~~~~alk~~~~lLk~---G~~~i~IfPEGtR 126 (235)
T cd07985 99 ANLATLKEMQQLLNE---GGQLIWVAPSGGR 126 (235)
T ss_pred ccHHHHHHHHHHHHc---CCeEEEEcCCCCC
Confidence 678899999999887 544 48899974
No 143
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=22.36 E-value=50 Score=25.75 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=19.6
Q ss_pred HHHHHHHHhCCCCCCCcEEEECCCeEEEe
Q 038762 32 AAIQSAIDACPPGNKPCQVRFPPGEYLTA 60 (268)
Q Consensus 32 ~aiq~Ai~~~~~~~~g~~v~ip~G~Y~~~ 60 (268)
+++++|++++.+ -..--+|+|+|.+.
T Consensus 17 ~~l~~~i~~l~~---~~~~~l~~Gk~~I~ 42 (154)
T COG2731 17 KALQRAIDFLEN---TDLAELPPGKYEID 42 (154)
T ss_pred HHHHHHHHHHHh---cchhhcCCceEecc
Confidence 899999999877 22234899999653
No 144
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=21.26 E-value=2.9e+02 Score=25.59 Aligned_cols=94 Identities=19% Similarity=0.150 Sum_probs=45.9
Q ss_pred eEEEEeccccEEEEeEEEeCCCCcEEEEeeeecEEEEeEEEEcCCCCCCCceeeecCcccEEEEeeE-EecCCceeeecC
Q 038762 148 RLVGFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQ-IDTGDDAICPKT 226 (268)
Q Consensus 148 ~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~~~DGi~~~~~~~v~I~n~~-i~~gDD~i~i~s 226 (268)
.++.|+.-..=+++...+.+..+-++.+....|=.|+..+|-+ +..|+-+.+.---.+|++. |.+.--++-+|+
T Consensus 396 ~GVyFydng~glle~ndi~~~~ysgvqirtGsNP~i~~NkIWg-----gqNGvLVyn~G~Gc~E~NeIFDNaMagVwIKT 470 (625)
T KOG1777|consen 396 VGVYFYDNGHGLLEQNDIRNHKYSGVQIRTGSNPKIRRNKIWG-----GQNGVLVYNGGLGCLEDNEIFDNAMAGVWIKT 470 (625)
T ss_pred eEEEEEeCCcchhhhhhhhhccccceEeecCCCCeeeecceec-----CcccEEEEcCcccccccccchhhhhcceEEec
Confidence 4555665555566666666666656666665665565555543 3333333322112222222 222223344444
Q ss_pred CCCCeecEEEEceEEecC-CccEEe
Q 038762 227 YTGPLYNLTATDSWIRTK-SSAIKL 250 (268)
Q Consensus 227 ~~~~~~nv~v~n~~~~~~-~~gi~i 250 (268)
-++=+++.+.+.++ +.||.|
T Consensus 471 ----ds~PtlrRNKI~dgRdgGici 491 (625)
T KOG1777|consen 471 ----DSNPTLRRNKIYDGRDGGICI 491 (625)
T ss_pred ----CCCcceeecceecCCCCcEEE
Confidence 34555666666543 334655
No 145
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=21.21 E-value=48 Score=25.94 Aligned_cols=12 Identities=25% Similarity=0.420 Sum_probs=7.5
Q ss_pred CcEEEECCCeEE
Q 038762 47 PCQVRFPPGEYL 58 (268)
Q Consensus 47 g~~v~ip~G~Y~ 58 (268)
|..|.+|+|+|+
T Consensus 122 GDli~vP~g~~H 133 (157)
T PF03079_consen 122 GDLIVVPAGTYH 133 (157)
T ss_dssp TCEEEE-TT--E
T ss_pred CCEEecCCCCce
Confidence 778899999886
No 146
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=20.82 E-value=1.8e+02 Score=21.74 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=26.2
Q ss_pred eeEEeeeccccCCCC-chhHHHHHHHHHhCCCCCCCcEEEE
Q 038762 13 HIHSVIDFGAKGDGI-HYDTAAIQSAIDACPPGNKPCQVRF 52 (268)
Q Consensus 13 ~~~~v~dyga~~dg~-~d~t~aiq~Ai~~~~~~~~g~~v~i 52 (268)
...++..+|..+|+. .+....|++||+.+.. .+.+.|+|
T Consensus 26 ~~~~i~~~gg~~d~~~gt~~~~I~~ai~~~~~-~~dgVlvl 65 (125)
T TIGR02364 26 DDVTIISAGGTDDGRLGTSPDKIIEAIEKADN-EADGVLIF 65 (125)
T ss_pred CCccEEEEecCCCCCccchHHHHHHHHHHhcC-CCCCEEEE
Confidence 356677777777654 4688999999998854 23444444
No 147
>PLN02901 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=20.27 E-value=99 Score=25.21 Aligned_cols=25 Identities=12% Similarity=0.285 Sum_probs=18.5
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEECCCe
Q 038762 30 DTAAIQSAIDACPPGNKPCQVRFPPGE 56 (268)
Q Consensus 30 ~t~aiq~Ai~~~~~~~~g~~v~ip~G~ 56 (268)
..++++++.+.+++ +...+++|+|+
T Consensus 108 ~~~~~~~~~~~l~~--g~~v~IfPEGt 132 (214)
T PLN02901 108 QLECLKRCMELLKK--GASVFFFPEGT 132 (214)
T ss_pred HHHHHHHHHHHHhC--CCEEEEeCCCC
Confidence 34567777777765 56788999997
Done!