Your job contains 1 sequence.
>038763
MDLERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVS
HGRAPQELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRG
ACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNC
EALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQK
KAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLS
DVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLA
AGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLVGKRCILA
GDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYG
GSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYN
EGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQG
READAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRH
IRYFGRVKHAEPGSFGGSGLGMDPMLPSIS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 038763
(690 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2162858 - symbol:AT5G35970 species:3702 "Arabi... 1642 4.0e-296 2
UNIPROTKB|E1BY42 - symbol:E1BY42 "Uncharacterized protein... 772 9.5e-80 2
UNIPROTKB|E2R760 - symbol:IGHMBP2 "Uncharacterized protei... 746 4.1e-77 2
UNIPROTKB|E2R8W1 - symbol:IGHMBP2 "Uncharacterized protei... 746 4.1e-77 2
TAIR|locus:2056896 - symbol:AT2G03270 species:3702 "Arabi... 768 3.1e-76 1
RGD|68325 - symbol:Ighmbp2 "immunoglobulin mu binding pro... 498 1.0e-75 3
UNIPROTKB|Q9EQN5 - symbol:Ighmbp2 "DNA-binding protein SM... 498 1.0e-75 3
UNIPROTKB|F1RY71 - symbol:IGHMBP2 "Uncharacterized protei... 493 7.4e-75 3
UNIPROTKB|Q60560 - symbol:IGHMBP2 "DNA-binding protein SM... 493 9.6e-75 3
DICTYBASE|DDB_G0271732 - symbol:DDB_G0271732 "AN1-type zi... 465 1.6e-65 3
MGI|MGI:99954 - symbol:Ighmbp2 "immunoglobulin mu binding... 524 3.3e-57 3
POMBASE|SPCC737.07c - symbol:SPCC737.07c "DNA polymerase ... 572 1.8e-55 1
UNIPROTKB|F1MHU8 - symbol:IGHMBP2 "Uncharacterized protei... 547 5.6e-55 2
UNIPROTKB|P38935 - symbol:IGHMBP2 "DNA-binding protein SM... 526 2.5e-52 2
SGD|S000001500 - symbol:HCS1 "Hexameric DNA polymerase al... 360 2.3e-42 2
TAIR|locus:2171007 - symbol:LBA1 "LOW-LEVEL BETA-AMYLASE ... 447 3.8e-39 1
CGD|CAL0003666 - symbol:NAM7 species:5476 "Candida albica... 439 6.3e-39 2
UNIPROTKB|Q5A507 - symbol:NAM7 "Putative uncharacterized ... 439 6.3e-39 2
WB|WBGene00004880 - symbol:smg-2 species:6239 "Caenorhabd... 428 3.2e-38 2
CGD|CAL0006154 - symbol:orf19.6199 species:5476 "Candida ... 290 1.6e-37 3
UNIPROTKB|Q5AAW1 - symbol:HCS1 "Putative uncharacterized ... 290 1.6e-37 3
UNIPROTKB|G4ND47 - symbol:MGG_00976 "Regulator-nonsense t... 435 5.2e-37 2
SGD|S000004685 - symbol:NAM7 "ATP-dependent RNA helicase ... 431 8.8e-37 2
ASPGD|ASPL0000056713 - symbol:AN0646 species:162425 "Emer... 413 2.1e-35 1
POMBASE|SPAC16C9.06c - symbol:upf1 "ATP-dependent RNA hel... 402 2.6e-34 1
FB|FBgn0030354 - symbol:Upf1 "Upf1" species:7227 "Drosoph... 403 3.3e-34 1
ZFIN|ZDB-GENE-040426-2836 - symbol:upf1 "upf1 regulator o... 409 6.5e-34 2
UNIPROTKB|E1C0J4 - symbol:UPF1 "Uncharacterized protein" ... 407 1.2e-33 2
UNIPROTKB|E1BEK9 - symbol:UPF1 "Uncharacterized protein" ... 407 1.2e-33 2
UNIPROTKB|E1C0J3 - symbol:UPF1 "Uncharacterized protein" ... 407 1.2e-33 2
UNIPROTKB|Q92900 - symbol:UPF1 "Regulator of nonsense tra... 407 1.2e-33 2
UNIPROTKB|E2RL81 - symbol:UPF1 "Uncharacterized protein" ... 407 1.2e-33 2
MGI|MGI:107995 - symbol:Upf1 "UPF1 regulator of nonsense ... 406 1.6e-33 2
DICTYBASE|DDB_G0288923 - symbol:upf1 "regulator of nonsen... 296 7.0e-32 2
TAIR|locus:2130384 - symbol:MAA3 "MAGATAMA 3" species:370... 323 6.9e-31 2
UNIPROTKB|Q8QHA5 - symbol:dna2 "DNA replication ATP-depen... 286 3.4e-29 2
UNIPROTKB|P51530 - symbol:DNA2 "DNA replication ATP-depen... 274 3.6e-28 2
UNIPROTKB|J3KPX5 - symbol:DNA2 "DNA replication ATP-depen... 274 4.5e-28 2
WB|WBGene00016566 - symbol:eri-7 species:6239 "Caenorhabd... 203 3.7e-27 2
WB|WBGene00001016 - symbol:dna-2 species:6239 "Caenorhabd... 268 7.9e-27 2
UNIPROTKB|H0Y455 - symbol:DNA2 "DNA replication ATP-depen... 274 1.2e-26 2
MGI|MGI:2443732 - symbol:Dna2 "DNA replication helicase 2... 263 1.2e-26 2
UNIPROTKB|E1BMP7 - symbol:DNA2 "DNA replication ATP-depen... 264 1.9e-26 2
UNIPROTKB|J9NRI6 - symbol:DNA2 "Uncharacterized protein" ... 262 2.2e-26 2
UNIPROTKB|K7DXW3 - symbol:DNA2 "DNA replication nuclease ... 264 2.4e-26 2
RGD|1306791 - symbol:Dna2 "DNA replication helicase 2 hom... 267 4.9e-26 2
UNIPROTKB|F6UZP1 - symbol:DNA2 "Uncharacterized protein" ... 262 1.2e-25 2
UNIPROTKB|E2QSH2 - symbol:E2QSH2 "Uncharacterized protein... 262 1.3e-25 2
UNIPROTKB|Q4S102 - symbol:GSTENG00025786001 "Chromosome 5... 266 2.0e-25 2
TAIR|locus:2200996 - symbol:SDE3 "SILENCING DEFECTIVE" sp... 242 4.0e-25 3
POMBASE|SPBC16D10.04c - symbol:dna2 "DNA replication endo... 253 1.7e-24 3
UNIPROTKB|G4MK85 - symbol:MGG_02491 "DNA replication ATP-... 172 2.7e-24 4
SGD|S000001207 - symbol:DNA2 "Tripartite DNA replication ... 220 1.5e-23 3
CGD|CAL0003335 - symbol:SEN1 species:5476 "Candida albica... 244 3.8e-23 3
UNIPROTKB|Q5ZKG3 - symbol:DNA2 "DNA replication ATP-depen... 160 3.8e-23 3
TAIR|locus:2018536 - symbol:AT1G65780 species:3702 "Arabi... 268 4.1e-23 2
UNIPROTKB|F1PYQ4 - symbol:DNA2 "Uncharacterized protein" ... 158 1.0e-22 3
GENEDB_PFALCIPARUM|MAL7P1.12 - symbol:MAL7P1.12 "erythroc... 234 1.2e-22 2
UNIPROTKB|Q8IC35 - symbol:MAL7P1.12 "Erythrocyte membrane... 234 1.2e-22 2
DICTYBASE|DDB_G0268914 - symbol:DDB_G0268914 species:4468... 218 1.9e-22 2
ZFIN|ZDB-GENE-090313-71 - symbol:dna2 "DNA replication he... 231 6.5e-22 3
UNIPROTKB|F1NWZ8 - symbol:DNA2 "DNA replication ATP-depen... 210 8.4e-21 2
UNIPROTKB|E1BQD2 - symbol:C4H4orf21 "Uncharacterized prot... 199 9.3e-21 3
UNIPROTKB|G4NIZ8 - symbol:MGG_02784 "DNA-binding protein ... 247 1.7e-20 2
DICTYBASE|DDB_G0289529 - symbol:DDB_G0289529 species:4468... 218 2.8e-20 2
DICTYBASE|DDB_G0285243 - symbol:DDB_G0285243 "putative sp... 234 2.9e-20 3
CGD|CAL0002159 - symbol:DNA2 species:5476 "Candida albica... 190 4.0e-20 2
TAIR|locus:2173033 - symbol:AT5G52090 species:3702 "Arabi... 232 5.3e-20 2
TAIR|locus:2166183 - symbol:AT5G37160 species:3702 "Arabi... 222 1.4e-19 3
TAIR|locus:2166173 - symbol:AT5G37150 species:3702 "Arabi... 227 4.5e-19 3
TAIR|locus:2018561 - symbol:AT1G65810 species:3702 "Arabi... 227 4.6e-19 2
DICTYBASE|DDB_G0268924 - symbol:DDB_G0268924 "Helicase SE... 213 4.8e-19 3
TAIR|locus:2059088 - symbol:AT2G19120 "AT2G19120" species... 231 1.3e-18 3
FB|FBgn0030170 - symbol:CG2990 species:7227 "Drosophila m... 131 2.3e-18 4
TAIR|locus:2126480 - symbol:AT4G30100 species:3702 "Arabi... 228 3.0e-18 4
DICTYBASE|DDB_G0268660 - symbol:DDB_G0268660 "DNA2/NAM7 h... 210 4.0e-18 3
TAIR|locus:2166163 - symbol:AT5G37140 species:3702 "Arabi... 212 4.1e-18 3
UNIPROTKB|E1BAS6 - symbol:SETX "Uncharacterized protein" ... 205 5.3e-18 3
TAIR|locus:2135472 - symbol:AT4G05540 species:3702 "Arabi... 208 1.4e-17 3
UNIPROTKB|E1BG37 - symbol:E1BG37 "Uncharacterized protein... 222 1.6e-17 2
UNIPROTKB|F6QXW0 - symbol:dna2 "DNA replication ATP-depen... 238 2.1e-17 3
DICTYBASE|DDB_G0274399 - symbol:DDB_G0274399 "DNA2/NAM7 h... 247 3.1e-17 1
SGD|S000000978 - symbol:ECM32 "DNA dependent ATPase/DNA h... 153 3.7e-17 3
ZFIN|ZDB-GENE-070402-1 - symbol:setx "senataxin" species:... 218 4.1e-17 3
POMBASE|SPBC29A10.10c - symbol:SPBC29A10.10c "tRNA-splici... 232 4.5e-17 3
CGD|CAL0001700 - symbol:orf19.702 species:5476 "Candida a... 161 4.7e-17 2
RGD|2322000 - symbol:LOC100363957 "hypothetical protein L... 222 6.6e-17 2
DICTYBASE|DDB_G0268662 - symbol:DDB_G0268662 "DNA2/NAM7 h... 209 7.2e-17 3
UNIPROTKB|F1PCI1 - symbol:C4orf21 "Uncharacterized protei... 218 1.2e-16 2
TAIR|locus:2152627 - symbol:AT5G37030 species:3702 "Arabi... 224 1.3e-16 2
UNIPROTKB|E1C4T7 - symbol:Gga.18015 "Uncharacterized prot... 212 1.4e-16 3
UNIPROTKB|F1PHA4 - symbol:SETX "Uncharacterized protein" ... 205 1.5e-16 4
UNIPROTKB|F1S0U6 - symbol:SETX "Uncharacterized protein" ... 200 3.9e-16 3
POMBASE|SPAC6G9.10c - symbol:sen1 "ATP-dependent 5' to 3'... 219 4.4e-16 3
UNIPROTKB|Q9BXT6 - symbol:MOV10L1 "Putative helicase Mov1... 194 4.8e-16 3
UNIPROTKB|I3LBB7 - symbol:I3LBB7 "Uncharacterized protein... 209 6.1e-16 1
ZFIN|ZDB-GENE-061013-333 - symbol:zgc:154086 "zgc:154086"... 197 6.2e-16 4
ASPGD|ASPL0000069352 - symbol:AN7246 species:162425 "Emer... 136 6.2e-16 3
ZFIN|ZDB-GENE-030131-9089 - symbol:mov10b.1 "Moloney leuk... 135 7.0e-16 3
POMBASE|SPCC1739.03 - symbol:hrr1 "Helicase Required for ... 152 8.4e-16 3
WARNING: Descriptions of 71 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2162858 [details] [associations]
symbol:AT5G35970 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0009941
"chloroplast envelope" evidence=IDA] [GO:0009570 "chloroplast
stroma" evidence=IDA] [GO:0015996 "chlorophyll catabolic process"
evidence=RCA] EMBL:CP002688 GO:GO:0009570 GO:GO:0003677
GO:GO:0009941 InterPro:IPR014001 SMART:SM00487 IPI:IPI00520082
RefSeq:NP_198446.3 UniGene:At.45828 ProteinModelPortal:F4K1G7
SMR:F4K1G7 PRIDE:F4K1G7 EnsemblPlants:AT5G35970.1 GeneID:833589
KEGG:ath:AT5G35970 OMA:DHFQREL Uniprot:F4K1G7
Length = 961
Score = 1642 (583.1 bits), Expect = 4.0e-296, Sum P(2) = 4.0e-296
Identities = 321/414 (77%), Positives = 352/414 (85%)
Query: 1 MDLERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVS 60
MD E+VK IQ R+DEFT +MS+LL++ERD ELE TQEEL+ VPTPDE+SDSSKPIEFLV
Sbjct: 252 MDSEKVKAIQERIDEFTSQMSQLLQVERDTELEVTQEELDVVPTPDESSDSSKPIEFLVR 311
Query: 61 HGRAPQELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRG 120
HG APQELCDTICNL+ VSTSTGLGGMHLVLF+V GNHRLPPTTLSPGDMVC+RVCDSRG
Sbjct: 312 HGDAPQELCDTICNLYAVSTSTGLGGMHLVLFKVGGNHRLPPTTLSPGDMVCIRVCDSRG 371
Query: 121 ACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNC 180
A AT+C QGFVHNLGEDGC+I VALESRHGDPTFSKLFGKSVRIDRI GLAD LTYERNC
Sbjct: 372 AGATACTQGFVHNLGEDGCSIGVALESRHGDPTFSKLFGKSVRIDRIHGLADALTYERNC 431
Query: 181 EALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKL-DGIMGKTFDDSQ 239
EALMLLQKNGL K+NPSI+ V TLFGD ED+TWLE+ND DWSE +L D + K FD SQ
Sbjct: 432 EALMLLQKNGLQKKNPSISVVATLFGDGEDITWLEQNDYVDWSEAELSDEPVSKLFDSSQ 491
Query: 240 KKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKL 299
++AIALG+NKKRP++I+QGPPGTGKTG+LKE+I AVQQGERVLVTAPTNAAVDNMVEKL
Sbjct: 492 RRAIALGVNKKRPVMIVQGPPGTGKTGMLKEVITLAVQQGERVLVTAPTNAAVDNMVEKL 551
Query: 300 SDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSL 359
+GLNIVRVGNPARIS AVASKSLGEIV SKLASF AE ERKKSDLRKDLRQCL+DD L
Sbjct: 552 LHLGLNIVRVGNPARISSAVASKSLGEIVNSKLASFRAELERKKSDLRKDLRQCLRDDVL 611
Query: 360 AAGIRXXXXXXXXXXXXXXXXXXXXXXSSAQVVLATNTGAADPLIRRLDTFDLV 413
AAGIR S+AQVV ATN GAADPLIRRL+TFDLV
Sbjct: 612 AAGIRQLLKQLGKTLKKKEKETVKEILSNAQVVFATNIGAADPLIRRLETFDLV 665
Score = 1225 (436.3 bits), Expect = 4.0e-296, Sum P(2) = 4.0e-296
Identities = 239/276 (86%), Positives = 255/276 (92%)
Query: 412 LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIA 471
L GKRCIL+GD CQLAPV+LSRKALEGG+GVSLLERAA+LH+GVLATKLTTQYRMND IA
Sbjct: 683 LQGKRCILSGDPCQLAPVVLSRKALEGGLGVSLLERAASLHDGVLATKLTTQYRMNDVIA 742
Query: 472 SWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLD 531
WASKEMYGG L S+ +VASHLL+D+PFVK TWITQCPL+LLDTR+PYGSLS+GCEE LD
Sbjct: 743 GWASKEMYGGWLKSAPSVASHLLIDSPFVKATWITQCPLVLLDTRMPYGSLSVGCEERLD 802
Query: 532 LAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVE 591
AGTGS YNEGEA+IVV+HV SLI AGVSP AIAVQSPYVAQVQ LRERLDD P A GVE
Sbjct: 803 PAGTGSLYNEGEADIVVNHVISLIYAGVSPMAIAVQSPYVAQVQLLRERLDDFPVADGVE 862
Query: 592 VATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHN 651
VATIDSFQGREADAVIISMVRSN LGAVGFLGDSRRMNVAITRA KHVAVVCDSSTICHN
Sbjct: 863 VATIDSFQGREADAVIISMVRSNNLGAVGFLGDSRRMNVAITRARKHVAVVCDSSTICHN 922
Query: 652 TFLARLLRHIRYFGRVKHAEPGSFGGSGLGMDPMLP 687
TFLARLLRHIRYFGRVKHA+PGS GGSGLG+DPMLP
Sbjct: 923 TFLARLLRHIRYFGRVKHADPGSLGGSGLGLDPMLP 958
>UNIPROTKB|E1BY42 [details] [associations]
symbol:E1BY42 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0032575 "ATP-dependent 5'-3' RNA
helicase activity" evidence=IEA] [GO:0032797 "SMN complex"
evidence=IEA] [GO:0043022 "ribosome binding" evidence=IEA]
[GO:0043141 "ATP-dependent 5'-3' DNA helicase activity"
evidence=IEA] [GO:0051260 "protein homooligomerization"
evidence=IEA] [GO:0000049 "tRNA binding" evidence=IEA]
InterPro:IPR000058 InterPro:IPR001374 InterPro:IPR003593
InterPro:IPR004483 InterPro:IPR026853 Pfam:PF01424 Pfam:PF01428
PROSITE:PS51061 SMART:SM00382 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0008270 GO:GO:0051260
GO:GO:0043022 GO:GO:0000049 InterPro:IPR014001 SMART:SM00487
GO:GO:0043141 GO:GO:0032797 GeneTree:ENSGT00700000104572
TIGRFAMs:TIGR00376 Gene3D:4.10.1110.10 GO:GO:0032575 OMA:HARQRIS
PANTHER:PTHR10887:SF23 EMBL:AADN02040052 EMBL:AADN02040053
IPI:IPI00595444 Ensembl:ENSGALT00000006901 Uniprot:E1BY42
Length = 976
Score = 772 (276.8 bits), Expect = 9.5e-80, Sum P(2) = 9.5e-80
Identities = 231/626 (36%), Positives = 322/626 (51%)
Query: 72 ICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQ 128
+ L + TGL G LV F + + + LP + PGD+V + DS G
Sbjct: 43 LLKLQAANQRTGLYGRLLVTFQPRKYDSDSELPYNSFGPGDIV--GLYDSVGQ-GDLLST 99
Query: 129 GFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQK 188
G + + T++ ESR G S S R+ + LA+ +TY R +AL L++
Sbjct: 100 GIITRVTSKAVTVAFE-ESRDG--MLSVDHESSYRLLK---LANDITYNRIKKALNTLKQ 153
Query: 189 NGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLN 248
+ P+ + LF L+ + ++ +KL + D SQ++A++ L
Sbjct: 154 ---YHGGPASDLIDVLFFS------LDPSPSSETKPLKL---YNDSLDASQREAVSFSLA 201
Query: 249 KKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+K L I+ GPPGTGKT + EII +AVQQG +VL AP+N AVDN+VE+L+ I+R
Sbjct: 202 QKE-LAIVHGPPGTGKTTTVVEIILQAVQQGLKVLCCAPSNVAVDNLVERLAGYKARILR 260
Query: 309 VGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRXXX 367
+G+PAR+ + SL ++ +S A VA+ RK D + +D
Sbjct: 261 LGHPARLLEPIQQHSLDAVLARSDSAQIVADV-RKDIDQAFAKSKKAQDKGERGHFLSEI 319
Query: 368 XXXXXXXXXXXXXXXXXXXSSAQVVLATNTGAA-DPLIRRL--DTFDLV----------- 413
+ A VVLATNTGA+ D ++ L + FDLV
Sbjct: 320 KALRKELKEREETAMTAALTHASVVLATNTGASSDGPLKLLPENYFDLVVIDECAQALEA 379
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
+CILAGD QL P I+S KA G+ +SL+ER + + LT QYR
Sbjct: 380 SCWIPLLKAPKCILAGDHKQLPPTIISHKAAAKGLSLSLMERVIERYGEKVVKMLTVQYR 439
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M++AI WAS EMYGG L + +VA HLL D P V T T PLLL+DT G L L
Sbjct: 440 MHEAIMQWASSEMYGGRLTAHPSVAQHLLKDLPGVTCTEETTIPLLLIDTA-GCGLLELE 498
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERL-DDL 584
E D G N GE ++V H+ +L+ AGV +AV +PY QV LRE L
Sbjct: 499 VE---DEQSKG---NPGEVQLVGLHIQALVDAGVKARDVAVVAPYNLQVDMLREHLCHRY 552
Query: 585 PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCD 644
PE +E+ ++D FQGRE +AVI+S VRSN G VGFL + RR+NVA+TRA +HVA++CD
Sbjct: 553 PE---LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAIICD 609
Query: 645 SSTICHNTFLARLLRHIRYFGRVKHA 670
S T+ FL RLL H R G+V+ A
Sbjct: 610 SRTVGSQAFLGRLLEHFRQHGQVRTA 635
Score = 48 (22.0 bits), Expect = 9.5e-80, Sum P(2) = 9.5e-80
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 15 EFTQRMSELLRIERDAEL 32
E +R ELLR ER+AEL
Sbjct: 4 EAAERQLELLREEREAEL 21
>UNIPROTKB|E2R760 [details] [associations]
symbol:IGHMBP2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0051260 "protein homooligomerization"
evidence=IEA] [GO:0043141 "ATP-dependent 5'-3' DNA helicase
activity" evidence=IEA] [GO:0043022 "ribosome binding"
evidence=IEA] [GO:0032797 "SMN complex" evidence=IEA] [GO:0032575
"ATP-dependent 5'-3' RNA helicase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000049
"tRNA binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000058 InterPro:IPR001374 InterPro:IPR003593
InterPro:IPR004483 InterPro:IPR026853 Pfam:PF01424 Pfam:PF01428
PROSITE:PS51039 PROSITE:PS51061 SMART:SM00154 SMART:SM00382
SMART:SM00393 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0051260
GO:GO:0043022 GO:GO:0000049 InterPro:IPR014001 SMART:SM00487
GO:GO:0043141 GO:GO:0032797 GeneTree:ENSGT00700000104572
TIGRFAMs:TIGR00376 Gene3D:4.10.1110.10 GO:GO:0032575
PANTHER:PTHR10887:SF23 EMBL:AAEX03011604 Ensembl:ENSCAFT00000038980
NextBio:20858044 Uniprot:E2R760
Length = 992
Score = 746 (267.7 bits), Expect = 4.1e-77, Sum P(2) = 4.1e-77
Identities = 232/626 (37%), Positives = 321/626 (51%)
Query: 72 ICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQ 128
+ L V S TGL G LV R LP + + GD+V + D AT +
Sbjct: 47 LLKLQVSSQRTGLYGRLLVTLEPRRCTSAAVLPSNSFTSGDIV--GLYDEGNQLATGILT 104
Query: 129 GFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQK 188
+++VA ++ H D S L R R+ LA+ +TY+R +AL+ L+K
Sbjct: 105 RITQR------SVTVAFDASH-DFQLS-LDRDRERAYRLLKLANDITYKRLKKALITLKK 156
Query: 189 NGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLN 248
H P+ + + LFG A +E L + D SQK+A++ L+
Sbjct: 157 --YHS-GPASSLIEVLFGGSAPSP-------ASNTEPPL--FCNTSLDASQKEAVSFALS 204
Query: 249 KKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I+R
Sbjct: 205 QKE-LAIIHGPPGTGKTTTVVEIILQAVRQGLKVLCCAPSNIAVDNLVERLARCKQKILR 263
Query: 309 VGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRXXX 367
+G+PAR+ ++ SL ++ +S A VA+ + + RQ +D + +
Sbjct: 264 LGHPARLLESIQQHSLDAVLARSDNAQIVADIRKDIDQAFVNNRQT-QDRREKSSVWNEV 322
Query: 368 XXXXXXXXXXXXXXXXXXXSSAQVVLATNTGAAD--PLIRRLDT-FDLV----------- 413
+SA VVLATNTGA+ PL DT FD+V
Sbjct: 323 KLLRKELKEREEAAMLESLTSAAVVLATNTGASSDGPLKLLPDTHFDVVVIDECAQALEA 382
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
++CILAGD QL P +S KA G+ +SL+ER A H + LT QYR
Sbjct: 383 SCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEHGARVVRTLTVQYR 442
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ AI WAS+ +Y G L + +VA HLL D P V T T PLLL+DT G L
Sbjct: 443 MHQAIMRWASEALYHGQLTAHPSVAGHLLRDLPGVAATEETGIPLLLVDTA-GCGLFEL- 500
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL- 584
E D G N GE +V H+ +L+ AGV S IAV +PY QV LR+ L
Sbjct: 501 --EDDDDQSKG---NPGEVRLVSLHIQALVDAGVQASDIAVITPYNLQVDLLRQSLAHRH 555
Query: 585 PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCD 644
PE +E+ ++D FQGRE +AV++S VRSN G VGFL + RR+NVA+TRA +HVAVVCD
Sbjct: 556 PE---LEIKSVDGFQGREKEAVVLSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVVCD 612
Query: 645 SSTICHNTFLARLLRHIRYFGRVKHA 670
S T+ ++ FL L+ H G V+ A
Sbjct: 613 SRTVSNHAFLKTLVDHFTEHGEVRTA 638
Score = 49 (22.3 bits), Expect = 4.1e-77, Sum P(2) = 4.1e-77
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 13 LDEFTQRMSELLRIERDAELE 33
++ F + +LL +ERDAE+E
Sbjct: 6 VESFVTKHLDLLELERDAEVE 26
>UNIPROTKB|E2R8W1 [details] [associations]
symbol:IGHMBP2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043141 "ATP-dependent 5'-3' DNA helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000058
InterPro:IPR001374 InterPro:IPR003593 InterPro:IPR004483
InterPro:IPR026853 Pfam:PF01424 Pfam:PF01428 PROSITE:PS51039
PROSITE:PS51061 SMART:SM00154 SMART:SM00382 SMART:SM00393
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
InterPro:IPR014001 SMART:SM00487 GO:GO:0043141
GeneTree:ENSGT00700000104572 TIGRFAMs:TIGR00376 Gene3D:4.10.1110.10
CTD:3508 OMA:HARQRIS PANTHER:PTHR10887:SF23 EMBL:AAEX03011604
RefSeq:XP_540807.2 Ensembl:ENSCAFT00000017093 GeneID:483686
KEGG:cfa:483686 Uniprot:E2R8W1
Length = 1010
Score = 746 (267.7 bits), Expect = 4.1e-77, Sum P(2) = 4.1e-77
Identities = 232/626 (37%), Positives = 321/626 (51%)
Query: 72 ICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQ 128
+ L V S TGL G LV R LP + + GD+V + D AT +
Sbjct: 47 LLKLQVSSQRTGLYGRLLVTLEPRRCTSAAVLPSNSFTSGDIV--GLYDEGNQLATGILT 104
Query: 129 GFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQK 188
+++VA ++ H D S L R R+ LA+ +TY+R +AL+ L+K
Sbjct: 105 RITQR------SVTVAFDASH-DFQLS-LDRDRERAYRLLKLANDITYKRLKKALITLKK 156
Query: 189 NGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLN 248
H P+ + + LFG A +E L + D SQK+A++ L+
Sbjct: 157 --YHS-GPASSLIEVLFGGSAPSP-------ASNTEPPL--FCNTSLDASQKEAVSFALS 204
Query: 249 KKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I+R
Sbjct: 205 QKE-LAIIHGPPGTGKTTTVVEIILQAVRQGLKVLCCAPSNIAVDNLVERLARCKQKILR 263
Query: 309 VGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRXXX 367
+G+PAR+ ++ SL ++ +S A VA+ + + RQ +D + +
Sbjct: 264 LGHPARLLESIQQHSLDAVLARSDNAQIVADIRKDIDQAFVNNRQT-QDRREKSSVWNEV 322
Query: 368 XXXXXXXXXXXXXXXXXXXSSAQVVLATNTGAAD--PLIRRLDT-FDLV----------- 413
+SA VVLATNTGA+ PL DT FD+V
Sbjct: 323 KLLRKELKEREEAAMLESLTSAAVVLATNTGASSDGPLKLLPDTHFDVVVIDECAQALEA 382
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
++CILAGD QL P +S KA G+ +SL+ER A H + LT QYR
Sbjct: 383 SCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEHGARVVRTLTVQYR 442
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ AI WAS+ +Y G L + +VA HLL D P V T T PLLL+DT G L
Sbjct: 443 MHQAIMRWASEALYHGQLTAHPSVAGHLLRDLPGVAATEETGIPLLLVDTA-GCGLFEL- 500
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL- 584
E D G N GE +V H+ +L+ AGV S IAV +PY QV LR+ L
Sbjct: 501 --EDDDDQSKG---NPGEVRLVSLHIQALVDAGVQASDIAVITPYNLQVDLLRQSLAHRH 555
Query: 585 PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCD 644
PE +E+ ++D FQGRE +AV++S VRSN G VGFL + RR+NVA+TRA +HVAVVCD
Sbjct: 556 PE---LEIKSVDGFQGREKEAVVLSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVVCD 612
Query: 645 SSTICHNTFLARLLRHIRYFGRVKHA 670
S T+ ++ FL L+ H G V+ A
Sbjct: 613 SRTVSNHAFLKTLVDHFTEHGEVRTA 638
Score = 49 (22.3 bits), Expect = 4.1e-77, Sum P(2) = 4.1e-77
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 13 LDEFTQRMSELLRIERDAELE 33
++ F + +LL +ERDAE+E
Sbjct: 6 VESFVTKHLDLLELERDAEVE 26
>TAIR|locus:2056896 [details] [associations]
symbol:AT2G03270 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR004483
SMART:SM00382 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0004386 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 EMBL:AC005313 EMBL:AC006284 HOGENOM:HOG000185831
TIGRFAMs:TIGR00376 UniGene:At.10455 UniGene:At.71239 EMBL:AY045820
EMBL:AY091361 IPI:IPI00521943 PIR:T02699 RefSeq:NP_565299.1
ProteinModelPortal:O81047 SMR:O81047 STRING:O81047 PaxDb:O81047
PRIDE:O81047 EnsemblPlants:AT2G03270.1 GeneID:814856
KEGG:ath:AT2G03270 TAIR:At2g03270 InParanoid:O81047 OMA:GHPSRVS
PhylomeDB:O81047 ProtClustDB:CLSN2687941 ArrayExpress:O81047
Genevestigator:O81047 Uniprot:O81047
Length = 639
Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
Identities = 213/617 (34%), Positives = 316/617 (51%)
Query: 71 TICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGF 130
TI NL V TGL G L+ F+ LP D+V +++ S ++ QG
Sbjct: 47 TILNLKCVDVQTGLMGKSLIEFQSNKGDVLPAHKFGNHDVVVLKLNKS-DLGSSPLAQGV 105
Query: 131 VHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNG 190
V+ L + T+ G T S+R+++ LA+ +TY R + L+ L K
Sbjct: 106 VYRLKDSSITVVFDEVPEEGLNT-------SLRLEK---LANEVTYRRMKDTLIQLSKGV 155
Query: 191 LHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKK 250
L R P+ V LFG+++ + + D+ ++ K D SQK AI L+ K
Sbjct: 156 L--RGPASDLVPVLFGERQPS--VSKKDVKSFTP------FNKNLDQSQKDAITKALSSK 205
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
+ ++ GPPGTGKT + EI+ + V++G ++L A +N AVDN+VE+L + +VRVG
Sbjct: 206 -DVFLLHGPPGTGKTTTVVEIVLQEVKRGSKILACAASNIAVDNIVERLVPHKVKLVRVG 264
Query: 311 NPARISPAVASKSL-GEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRXXXXX 369
+PAR+ P V +L +++K + + ++ L L + KD + I+
Sbjct: 265 HPARLLPQVLDSALDAQVLKGDNSGLANDIRKEMKALNGKLLKA-KDKNTRRLIQKELRT 323
Query: 370 XXXXXXXXXXXXXXXXXSSAQVVLATNTGAADPLIRRLD--TFDLV-------------- 413
+A V+L T TGA L R+LD TFDLV
Sbjct: 324 LGKEERKRQQLAVSDVIKNADVILTTLTGA---LTRKLDNRTFDLVIIDEGAQALEVACW 380
Query: 414 -----GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMND 468
G RCILAGD QL P I S +A G+G +L ER A L+ + + LT QYRM++
Sbjct: 381 IALLKGSRCILAGDHLQLPPTIQSAEAERKGLGRTLFERLADLYGDEIKSMLTVQYRMHE 440
Query: 469 AIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEE 528
I +W+SKE+Y + + S+VASH+L D V + T+ LLL+DT GC+
Sbjct: 441 LIMNWSSKELYDNKITAHSSVASHMLFDLENVTKSSSTEATLLLVDTA--------GCDM 492
Query: 529 HLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAA 588
S YNEGEAE+ + H L+ +GV PS I + +PY AQV LR +
Sbjct: 493 EEKKDEEESTYNEGEAEVAMAHAKRLMESGVQPSDIGIITPYAAQVMLLRILRGKEEKLK 552
Query: 589 GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
+E++T+D FQGRE +A+IISMVRSN+ VGFL D RRMNVA+TR+ + +VCD+ T+
Sbjct: 553 DMEISTVDGFQGREKEAIIISMVRSNSKKEVGFLKDQRRMNVAVTRSRRQCCIVCDTETV 612
Query: 649 CHNTFLARLLRHIRYFG 665
+ FL R++ + G
Sbjct: 613 SSDAFLKRMIEYFEEHG 629
>RGD|68325 [details] [associations]
symbol:Ighmbp2 "immunoglobulin mu binding protein 2" species:10116
"Rattus norvegicus" [GO:0000049 "tRNA binding" evidence=IEA;ISO;ISS]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0001078 "RNA polymerase II
core promoter proximal region sequence-specific DNA binding
transcription factor activity involved in negative regulation of
transcription" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IEA;ISO;IDA] [GO:0003723 "RNA binding" evidence=ISO;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISO;ISS] [GO:0005634
"nucleus" evidence=IEA;ISO;ISS] [GO:0005737 "cytoplasm"
evidence=IEA;ISO;ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO;ISS] [GO:0008134 "transcription factor binding"
evidence=IEA;ISO] [GO:0008186 "RNA-dependent ATPase activity"
evidence=ISO;ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0021522 "spinal cord motor neuron differentiation" evidence=ISO]
[GO:0030424 "axon" evidence=IEA;ISO] [GO:0030426 "growth cone"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO] [GO:0032575 "ATP-dependent 5'-3' RNA helicase
activity" evidence=IEA;ISO;ISS] [GO:0032797 "SMN complex"
evidence=IEA;ISO] [GO:0043022 "ribosome binding"
evidence=IEA;ISO;ISS] [GO:0043025 "neuronal cell body" evidence=ISO]
[GO:0043141 "ATP-dependent 5'-3' DNA helicase activity"
evidence=IEA;ISO;ISS] [GO:0043621 "protein self-association"
evidence=ISS] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO] [GO:0051260 "protein homooligomerization"
evidence=IEA;ISO] InterPro:IPR000058 InterPro:IPR001374
InterPro:IPR003593 InterPro:IPR004483 InterPro:IPR026853
Pfam:PF01424 Pfam:PF01428 PROSITE:PS51039 PROSITE:PS51061
SMART:SM00154 SMART:SM00382 SMART:SM00393 RGD:68325 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0046872 GO:GO:0003677
GO:GO:0030424 GO:GO:0001078 GO:GO:0008270 GO:GO:0051260
GO:GO:0043621 GO:GO:0043022 GO:GO:0030529 GO:GO:0000049
eggNOG:COG1112 InterPro:IPR014001 SMART:SM00487 GO:GO:0043141
GO:GO:0032797 HOGENOM:HOG000185831 TIGRFAMs:TIGR00376
Gene3D:4.10.1110.10 GO:GO:0032575 CTD:3508 OrthoDB:EOG4GHZNJ
PANTHER:PTHR10887:SF23 EMBL:AF199411 IPI:IPI00190206
RefSeq:NP_113774.1 UniGene:Rn.23984 HSSP:P38935
ProteinModelPortal:Q9EQN5 SMR:Q9EQN5 STRING:Q9EQN5 PRIDE:Q9EQN5
GeneID:29532 KEGG:rno:29532 UCSC:RGD:68325 InParanoid:Q9EQN5
NextBio:609508 ArrayExpress:Q9EQN5 Genevestigator:Q9EQN5
Uniprot:Q9EQN5
Length = 988
Score = 498 (180.4 bits), Expect = 1.0e-75, Sum P(3) = 1.0e-75
Identities = 119/260 (45%), Positives = 154/260 (59%)
Query: 412 LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIA 471
L +CILAGD QL P +S KA G+ SL+ER A H + L QYRM+ AI
Sbjct: 389 LKAPKCILAGDHKQLPPTTVSHKAALAGLSRSLMERLAEKHGAAVVRMLAVQYRMHQAIT 448
Query: 472 SWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLD 531
WAS+ MY G L + +VA HLL D P V T T PLLL+DT G L L EE D
Sbjct: 449 RWASEAMYHGQLTAHPSVAGHLLKDLPGVADTEETSVPLLLIDTA-GCGLLEL--EEE-D 504
Query: 532 LAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL-PEAAGV 590
G N GE +V H+ +L+ AGV IAV +PY QV LR+ L + PE +
Sbjct: 505 SQSKG---NPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVDLLRQSLSNKHPE---L 558
Query: 591 EVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICH 650
E+ ++D FQGRE +AVI++ VRSN G VGFL + RR+NVA+TRA +HVAV+CDS T+ +
Sbjct: 559 EIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSHTVNN 618
Query: 651 NTFLARLLRHIRYFGRVKHA 670
+ FL L+ + G V+ A
Sbjct: 619 HAFLKTLVDYFTEHGEVRTA 638
Score = 274 (101.5 bits), Expect = 1.0e-75, Sum P(3) = 1.0e-75
Identities = 96/297 (32%), Positives = 146/297 (49%)
Query: 166 RIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEV 225
R+ LA+ +TY+R +AL+ L+K H P+ + + L G E L ++
Sbjct: 134 RLLKLANDVTYKRLKKALLTLKK--YHS-GPASSLIDVLLGGSTPSPATEIPPLTFYNT- 189
Query: 226 KLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285
T D SQK+A++ L +K + II GPPGTGKT + EII +AV+QG +VL
Sbjct: 190 --------TLDPSQKEAVSFALAQKE-VAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCC 240
Query: 286 APTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKS 344
AP+N AVDN+VE+L+ I+R+G+PAR+ +V SL ++ +S A VA+ R+
Sbjct: 241 APSNIAVDNLVERLALCKKQILRLGHPARLLESVQQHSLDAVLARSDNAQIVADI-RRDI 299
Query: 345 DLRKDLRQCLKDDSLAAGIRXXXXXXXXXXXXXXXXXXXXXXSSAQVVLATNTGAA-DPL 403
D + +D + R S+A VVLATNTGA+ D
Sbjct: 300 DQVFGKNKKTQDKREKSNFRNEIKLLRKELKEREEAAIVQSLSAADVVLATNTGASTDGP 359
Query: 404 IRRL--DTFDLVG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLA 457
++ L D FD+V C A + P++ + K + G L + H+ LA
Sbjct: 360 LKLLPEDYFDVVVVDECAQALEASCWIPLLKAPKCILAGDHKQLPPTTVS-HKAALA 415
Score = 50 (22.7 bits), Expect = 1.0e-75, Sum P(3) = 1.0e-75
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 13 LDEFTQRMSELLRIERDAELE 33
++ F + +LL +ERDAE+E
Sbjct: 6 VESFVAQQLQLLELERDAEVE 26
>UNIPROTKB|Q9EQN5 [details] [associations]
symbol:Ighmbp2 "DNA-binding protein SMUBP-2" species:10116
"Rattus norvegicus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000058 InterPro:IPR001374 InterPro:IPR003593
InterPro:IPR004483 InterPro:IPR026853 Pfam:PF01424 Pfam:PF01428
PROSITE:PS51039 PROSITE:PS51061 SMART:SM00154 SMART:SM00382
SMART:SM00393 RGD:68325 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0046872 GO:GO:0003677 GO:GO:0030424 GO:GO:0001078
GO:GO:0008270 GO:GO:0051260 GO:GO:0043621 GO:GO:0043022
GO:GO:0030529 GO:GO:0000049 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 GO:GO:0043141 GO:GO:0032797 HOGENOM:HOG000185831
TIGRFAMs:TIGR00376 Gene3D:4.10.1110.10 GO:GO:0032575 CTD:3508
OrthoDB:EOG4GHZNJ PANTHER:PTHR10887:SF23 EMBL:AF199411
IPI:IPI00190206 RefSeq:NP_113774.1 UniGene:Rn.23984 HSSP:P38935
ProteinModelPortal:Q9EQN5 SMR:Q9EQN5 STRING:Q9EQN5 PRIDE:Q9EQN5
GeneID:29532 KEGG:rno:29532 UCSC:RGD:68325 InParanoid:Q9EQN5
NextBio:609508 ArrayExpress:Q9EQN5 Genevestigator:Q9EQN5
Uniprot:Q9EQN5
Length = 988
Score = 498 (180.4 bits), Expect = 1.0e-75, Sum P(3) = 1.0e-75
Identities = 119/260 (45%), Positives = 154/260 (59%)
Query: 412 LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIA 471
L +CILAGD QL P +S KA G+ SL+ER A H + L QYRM+ AI
Sbjct: 389 LKAPKCILAGDHKQLPPTTVSHKAALAGLSRSLMERLAEKHGAAVVRMLAVQYRMHQAIT 448
Query: 472 SWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLD 531
WAS+ MY G L + +VA HLL D P V T T PLLL+DT G L L EE D
Sbjct: 449 RWASEAMYHGQLTAHPSVAGHLLKDLPGVADTEETSVPLLLIDTA-GCGLLEL--EEE-D 504
Query: 532 LAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL-PEAAGV 590
G N GE +V H+ +L+ AGV IAV +PY QV LR+ L + PE +
Sbjct: 505 SQSKG---NPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVDLLRQSLSNKHPE---L 558
Query: 591 EVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICH 650
E+ ++D FQGRE +AVI++ VRSN G VGFL + RR+NVA+TRA +HVAV+CDS T+ +
Sbjct: 559 EIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSHTVNN 618
Query: 651 NTFLARLLRHIRYFGRVKHA 670
+ FL L+ + G V+ A
Sbjct: 619 HAFLKTLVDYFTEHGEVRTA 638
Score = 274 (101.5 bits), Expect = 1.0e-75, Sum P(3) = 1.0e-75
Identities = 96/297 (32%), Positives = 146/297 (49%)
Query: 166 RIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEV 225
R+ LA+ +TY+R +AL+ L+K H P+ + + L G E L ++
Sbjct: 134 RLLKLANDVTYKRLKKALLTLKK--YHS-GPASSLIDVLLGGSTPSPATEIPPLTFYNT- 189
Query: 226 KLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285
T D SQK+A++ L +K + II GPPGTGKT + EII +AV+QG +VL
Sbjct: 190 --------TLDPSQKEAVSFALAQKE-VAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCC 240
Query: 286 APTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKS 344
AP+N AVDN+VE+L+ I+R+G+PAR+ +V SL ++ +S A VA+ R+
Sbjct: 241 APSNIAVDNLVERLALCKKQILRLGHPARLLESVQQHSLDAVLARSDNAQIVADI-RRDI 299
Query: 345 DLRKDLRQCLKDDSLAAGIRXXXXXXXXXXXXXXXXXXXXXXSSAQVVLATNTGAA-DPL 403
D + +D + R S+A VVLATNTGA+ D
Sbjct: 300 DQVFGKNKKTQDKREKSNFRNEIKLLRKELKEREEAAIVQSLSAADVVLATNTGASTDGP 359
Query: 404 IRRL--DTFDLVG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLA 457
++ L D FD+V C A + P++ + K + G L + H+ LA
Sbjct: 360 LKLLPEDYFDVVVVDECAQALEASCWIPLLKAPKCILAGDHKQLPPTTVS-HKAALA 415
Score = 50 (22.7 bits), Expect = 1.0e-75, Sum P(3) = 1.0e-75
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 13 LDEFTQRMSELLRIERDAELE 33
++ F + +LL +ERDAE+E
Sbjct: 6 VESFVAQQLQLLELERDAEVE 26
>UNIPROTKB|F1RY71 [details] [associations]
symbol:IGHMBP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051260 "protein homooligomerization" evidence=IEA]
[GO:0043141 "ATP-dependent 5'-3' DNA helicase activity"
evidence=IEA] [GO:0043022 "ribosome binding" evidence=IEA]
[GO:0032797 "SMN complex" evidence=IEA] [GO:0032575 "ATP-dependent
5'-3' RNA helicase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000049 "tRNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000058
InterPro:IPR001374 InterPro:IPR003593 InterPro:IPR004483
InterPro:IPR026853 Pfam:PF01424 Pfam:PF01428 PROSITE:PS51039
PROSITE:PS51061 SMART:SM00382 SMART:SM00393 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0051260 GO:GO:0043022 GO:GO:0000049
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043141
GO:GO:0032797 GeneTree:ENSGT00700000104572 TIGRFAMs:TIGR00376
Gene3D:4.10.1110.10 GO:GO:0032575 CTD:3508 OMA:HARQRIS
PANTHER:PTHR10887:SF23 EMBL:CU694814 RefSeq:XP_003122472.2
Ensembl:ENSSSCT00000014076 GeneID:100520173 KEGG:ssc:100520173
Uniprot:F1RY71
Length = 987
Score = 493 (178.6 bits), Expect = 7.4e-75, Sum P(3) = 7.4e-75
Identities = 120/260 (46%), Positives = 156/260 (60%)
Query: 412 LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIA 471
L ++CILAGD QL P I+S KA G+ +SL+ER + LT QYRM+ AIA
Sbjct: 387 LKARKCILAGDHKQLPPTIISHKAALAGLALSLMERLVEERGAGVLRMLTVQYRMHQAIA 446
Query: 472 SWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLD 531
WAS+ +Y G L + ++VA HLL D P V T T PLLL+DT G L EE D
Sbjct: 447 QWASEALYHGRLTAHASVAGHLLRDLPGVAATEETGIPLLLVDTA-GCGLFEL--EEE-D 502
Query: 532 LAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL-PEAAGV 590
G N GE +V HV +L+ AGV +AV +PY QV LR+ L PE +
Sbjct: 503 EQSKG---NPGEVRLVRLHVQALVDAGVPAGDVAVITPYNLQVDLLRQSLAQRHPE---L 556
Query: 591 EVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICH 650
E+ ++D FQGRE +AVI+S VRSN G VGFL + RR+NVA+TRA +HVAVVCDS T+ +
Sbjct: 557 EIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVVCDSRTVSN 616
Query: 651 NTFLARLLRHIRYFGRVKHA 670
+ FL L+ + G V+ A
Sbjct: 617 HAFLKTLVAYFAEHGEVRTA 636
Score = 278 (102.9 bits), Expect = 7.4e-75, Sum P(3) = 7.4e-75
Identities = 92/279 (32%), Positives = 138/279 (49%)
Query: 166 RIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEV 225
R+ LA+ +TY+R +AL LQK H P+ A + LFG + S++
Sbjct: 132 RLLKLANDVTYKRLKKALTTLQK--YHS-GPASALIEVLFGASAP---------SPASDI 179
Query: 226 KLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285
D SQK+A+ L++K L II GPPGTGKT + EII +AV+QG +VL
Sbjct: 180 PPLTFYNTALDASQKEAVLFALSQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGSKVLCC 238
Query: 286 APTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKS 344
AP+N AVDN+VE+L+ IVR+G+PAR+ ++ SL ++ +S A VA+ R
Sbjct: 239 APSNVAVDNLVERLARWKQRIVRLGHPARLLESIQQHSLDAVLARSDGARVVADIRRDID 298
Query: 345 DLRKDLRQCLKDDSLAAGIRXXXXXXXXXXXXXXXXXXXXXXSSAQVVLATNTGAAD--P 402
+ ++ +D + R ++A+VVLATN GA+ P
Sbjct: 299 QVLGKTKKT-QDKREKSHFRDEIKLLRKELKEREEAAMLESLTAARVVLATNAGASSDGP 357
Query: 403 LIRRLDT-FDLVG-KRCILAGDQCQLAPVILSRKALEGG 439
L D FD+V C A + P++ +RK + G
Sbjct: 358 LKLLPDGHFDVVVIDECAQALEASCWVPLLKARKCILAG 396
Score = 43 (20.2 bits), Expect = 7.4e-75, Sum P(3) = 7.4e-75
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 13 LDEFTQRMSELLRIERDAELE 33
++ F + +LL +ER AE+E
Sbjct: 6 VESFVIKQLDLLELERSAEVE 26
>UNIPROTKB|Q60560 [details] [associations]
symbol:IGHMBP2 "DNA-binding protein SMUBP-2" species:10036
"Mesocricetus auratus" [GO:0000049 "tRNA binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS] [GO:0008186 "RNA-dependent ATPase activity"
evidence=ISS] [GO:0032575 "ATP-dependent 5'-3' RNA helicase
activity" evidence=ISS] [GO:0043022 "ribosome binding"
evidence=ISS] [GO:0043141 "ATP-dependent 5'-3' DNA helicase
activity" evidence=ISS] [GO:0043621 "protein self-association"
evidence=ISS] InterPro:IPR000058 InterPro:IPR001374
InterPro:IPR003593 InterPro:IPR004483 InterPro:IPR026853
Pfam:PF01424 Pfam:PF01428 PROSITE:PS51039 PROSITE:PS51061
SMART:SM00154 SMART:SM00382 SMART:SM00393 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0030424 GO:GO:0008270 GO:GO:0006351
GO:GO:0043621 GO:GO:0043022 GO:GO:0030529 GO:GO:0000049
InterPro:IPR014001 SMART:SM00487 GO:GO:0043141 TIGRFAMs:TIGR00376
Gene3D:4.10.1110.10 GO:GO:0032575 HOVERGEN:HBG077019
PANTHER:PTHR10887:SF23 EMBL:L15625 PIR:T48845
ProteinModelPortal:Q60560 SMR:Q60560 Uniprot:Q60560
Length = 989
Score = 493 (178.6 bits), Expect = 9.6e-75, Sum P(3) = 9.6e-75
Identities = 119/260 (45%), Positives = 153/260 (58%)
Query: 412 LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIA 471
L +CILAGD QL P +S KA G+ SL+ER H LT QYRM+ AI
Sbjct: 389 LKAPKCILAGDHRQLPPTTISHKAALAGLSRSLMERLVEKHGAGAVRMLTVQYRMHQAIT 448
Query: 472 SWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLD 531
WAS+ MY G L + +VA HLL D P V T T PLLL+DT G L L EE D
Sbjct: 449 RWASEAMYHGQLTAHPSVAGHLLKDLPGVADTEETSVPLLLIDTA-GCGLLELD-EE--D 504
Query: 532 LAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL-PEAAGV 590
G N GE +V H+ +L+ AGV IAV +PY QV LR+ L + PE +
Sbjct: 505 SQSKG---NPGEVRLVTLHIQALVDAGVHAGDIAVIAPYNLQVDLLRQSLSNKHPE---L 558
Query: 591 EVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICH 650
E+ ++D FQGRE +AVI++ VRSN G VGFL + RR+NVA+TRA +HVAV+CDS T+ +
Sbjct: 559 EIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNN 618
Query: 651 NTFLARLLRHIRYFGRVKHA 670
+ FL L+ + G V+ A
Sbjct: 619 HAFLKTLVDYFTEHGEVRTA 638
Score = 264 (98.0 bits), Expect = 9.6e-75, Sum P(3) = 9.6e-75
Identities = 88/279 (31%), Positives = 138/279 (49%)
Query: 166 RIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEV 225
R+ LA+ +TY+R +ALM L+K H P+ + + L G + +E+
Sbjct: 134 RLLKLANDVTYKRLKKALMTLKK--YHS-GPASSLIDVLLGGSSP---------SPTTEI 181
Query: 226 KLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285
D SQK+A++ L +K + II GPPGTGKT + EII +AV+QG ++L
Sbjct: 182 PPFTFYNTALDPSQKEAVSFALAQKE-VAIIHGPPGTGKTTTVVEIILQAVKQGLKILCC 240
Query: 286 APTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKS 344
AP+N AVDN+VE+L+ I+R+G+PAR+ + SL ++ +S A VA+ RK
Sbjct: 241 APSNVAVDNLVERLALCKKRILRLGHPARLLESAQQHSLDAVLARSDNAQIVADI-RKDI 299
Query: 345 DLRKDLRQCLKDDSLAAGIRXXXXXXXXXXXXXXXXXXXXXXSSAQVVLATNTGAA-DPL 403
D + +D + R ++A VVLATNTGA+ D
Sbjct: 300 DQVFGKNKKTQDKREKSNFRNEIKLLRKELKEREEAAIVQSLTAADVVLATNTGASSDGP 359
Query: 404 IRRL--DTFDLVG-KRCILAGDQCQLAPVILSRKALEGG 439
++ L + FD+V C A + P++ + K + G
Sbjct: 360 LKLLPENHFDVVVVDECAQALEASCWIPLLKAPKCILAG 398
Score = 69 (29.3 bits), Expect = 2.5e-54, Sum P(3) = 2.5e-54
Identities = 37/138 (26%), Positives = 59/138 (42%)
Query: 72 ICNLFVVSTSTGLGGMHLVLF--RVEGNHR-LPPTTLSPGDMVCVRVCDSRGACATSCIQ 128
+ L V S TGL G LV F R G LP + + GD+V + + AT +
Sbjct: 47 LLKLQVSSQCTGLYGQRLVTFEPRKLGPVVVLPSNSFTSGDIVGLYDANESSQLATGVLT 106
Query: 129 GFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQK 188
+++VA + H F + R+ LA+ +TY+R +ALM L+K
Sbjct: 107 RITQK------SVTVAFDESHD---FQLNLDRE-NTYRLLKLANDVTYKRLKKALMTLKK 156
Query: 189 NGLHKRNPSIAAVVTLFG 206
+ P+ + + L G
Sbjct: 157 ---YHSGPASSLIDVLLG 171
Score = 56 (24.8 bits), Expect = 9.6e-75, Sum P(3) = 9.6e-75
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 11 SRLDEFTQRMSELLRIERDAELE 33
S ++ F + ELL +ERDAE+E
Sbjct: 4 STVESFVAQQLELLELERDAEVE 26
Score = 45 (20.9 bits), Expect = 8.1e-52, Sum P(3) = 8.1e-52
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 96 GNHR-LPPTTLS 106
G+HR LPPTT+S
Sbjct: 398 GDHRQLPPTTIS 409
>DICTYBASE|DDB_G0271732 [details] [associations]
symbol:DDB_G0271732 "AN1-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0032508 "DNA duplex unwinding"
evidence=ISS] [GO:0003678 "DNA helicase activity" evidence=ISS]
InterPro:IPR000058 InterPro:IPR001374 InterPro:IPR003593
InterPro:IPR004483 Pfam:PF01424 Pfam:PF01428 PROSITE:PS51061
SMART:SM00382 dictyBase:DDB_G0271732 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 EMBL:AAFI02000006 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 GO:GO:0003678 TIGRFAMs:TIGR00376 Gene3D:4.10.1110.10
OMA:HARQRIS RefSeq:XP_645520.1 ProteinModelPortal:Q75JA0
PRIDE:Q75JA0 EnsemblProtists:DDB0232283 GeneID:8618149
KEGG:ddi:DDB_G0271732 InParanoid:Q75JA0 ProtClustDB:CLSZ2846906
Uniprot:Q75JA0
Length = 1024
Score = 465 (168.7 bits), Expect = 1.6e-65, Sum P(3) = 1.6e-65
Identities = 111/263 (42%), Positives = 152/263 (57%)
Query: 414 GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASW 473
G + +LAGD QL P I S +A + G+ ++L ER + ++ L QYRMN I W
Sbjct: 441 GNKLLLAGDHQQLPPTIHSMEAAKMGLSITLFERIIKQYGDQVSRLLNVQYRMNHKIMDW 500
Query: 474 ASKEMYGGSLISSSTVASHLLV--DTPFVKPTWITQCPLLLLDTRLPYGSLSLGC--EEH 529
+S E Y +I+ +V++HLLV D+P ++ T T CPLL++DT GC EE
Sbjct: 501 SSMEFYNSKMIADKSVSNHLLVTGDSPKIRNTLTTTCPLLMIDTS--------GCDMEES 552
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG 589
D G F N GE +V H+ LI GV P+ I V +PY QV+ L+ L + +
Sbjct: 553 QDDEGESKF-NNGEVIVVKRHIEKLIECGVKPNDIGVITPYNGQVKLLKSYLSK--KYSS 609
Query: 590 VEVATIDSFQGREADAVIISMVRSNTLGA--VGFLGDSRRMNVAITRACKHVAVVCDSST 647
+E+ T+D FQGRE D +IISMVRSNT VGFL + RR NVAITRA KHV VVCD+ T
Sbjct: 610 MEIGTVDGFQGREKDVIIISMVRSNTDAPHKVGFLTEDRRTNVAITRARKHVVVVCDTDT 669
Query: 648 ICHNTFLARLLRHIRYFGRVKHA 670
I + L R++ + + G + A
Sbjct: 670 ISSHEPLKRMVDYFKLNGLFRSA 692
Score = 268 (99.4 bits), Expect = 1.6e-65, Sum P(3) = 1.6e-65
Identities = 99/366 (27%), Positives = 165/366 (45%)
Query: 95 EGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVALESRHGD--- 151
+ N LPP +S GD+V +R S+ +G V+ + D I +A + + D
Sbjct: 94 DDNFDLPPHKISNGDIVGIRPSKSKPG-TNHYFKGVVYKV--DSRKIVIAFDDNYEDSDP 150
Query: 152 ---PTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKR--NPSIAAVVTLFG 206
P + F ID+ LA+ +TY++ E+L L+ N ++KR N + + L
Sbjct: 151 NNRPMLDEYFQTLYSIDK---LANDVTYKKIRESLDKLKLN-VNKRTGNSENSLINLLLN 206
Query: 207 DKEDVTWLEEND-LADWSEVKLDG-IMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGK 264
D + N ++ K + ++ K + SQK+AI L+ + I GPPGTGK
Sbjct: 207 DGYQPS--NNNSYFQQINKEKFEQQLINKGLNQSQKEAILFSLSSN-DVACIHGPPGTGK 263
Query: 265 TGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVG---------LNIVRVGNPARI 315
T + E I + ++ G++VL P+N +VDNM+EKL + +N R+G+P RI
Sbjct: 264 TTTVVEFIVQLIKSGKKVLACGPSNLSVDNMLEKLLEYSNSSSCNGFLINATRIGHPTRI 323
Query: 316 SPAVASKSLGEIVK-SKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRXXXXXXXXXX 374
P + +L K S+ + + + L K L + +K S I+
Sbjct: 324 LPQLLKHTLDHKTKNSEGGQIIKGIKDEIKSLSKQLLK-VKQHSERRVIQSSIKELRIDL 382
Query: 375 XXXXXXXXXXXXSSAQVVLATNTGAADPLIRRLDTFD-LVGKRCILAGDQCQLAPVILSR 433
+ + V+L+TNTGA+D ++ +D FD +V C A + P+
Sbjct: 383 KNREKSLIQQVINDSNVILSTNTGASDSSLKGIDNFDWVVIDECAQALEASCWIPIQKGN 442
Query: 434 KALEGG 439
K L G
Sbjct: 443 KLLLAG 448
Score = 39 (18.8 bits), Expect = 1.6e-65, Sum P(3) = 1.6e-65
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 46 DENSDSSKPIEFLVSHGRAPQELCD-TICNLFVVSTSTGLGGMHLV 90
++ S+ ++ IE + EL TI + +++ STGL G L+
Sbjct: 15 EKESEVNEAIENFATLSNKELELKGVTINKVKILNFSTGLSGRILI 60
Score = 37 (18.1 bits), Expect = 2.5e-65, Sum P(3) = 2.5e-65
Identities = 6/20 (30%), Positives = 15/20 (75%)
Query: 13 LDEFTQRMSELLRIERDAEL 32
++ + ++ ELL IE+++E+
Sbjct: 1 MENYIKKTLELLDIEKESEV 20
>MGI|MGI:99954 [details] [associations]
symbol:Ighmbp2 "immunoglobulin mu binding protein 2"
species:10090 "Mus musculus" [GO:0000049 "tRNA binding"
evidence=ISO] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0001078 "RNA polymerase II
core promoter proximal region sequence-specific DNA binding
transcription factor activity involved in negative regulation of
transcription" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006412 "translation"
evidence=NAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO] [GO:0008134 "transcription factor binding"
evidence=ISO] [GO:0008186 "RNA-dependent ATPase activity"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0021522
"spinal cord motor neuron differentiation" evidence=IMP]
[GO:0030424 "axon" evidence=IDA] [GO:0030426 "growth cone"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032575 "ATP-dependent 5'-3' RNA helicase activity"
evidence=ISO] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043022 "ribosome binding" evidence=ISO;IDA] [GO:0043025
"neuronal cell body" evidence=IDA] [GO:0043141 "ATP-dependent 5'-3'
DNA helicase activity" evidence=ISO] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] [GO:0051260 "protein homooligomerization"
evidence=ISO] InterPro:IPR000058 InterPro:IPR001374
InterPro:IPR003593 InterPro:IPR004483 InterPro:IPR026853
Pfam:PF01424 PROSITE:PS51039 PROSITE:PS51061 SMART:SM00154
SMART:SM00382 SMART:SM00393 MGI:MGI:99954 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0006412 GO:GO:0030424 GO:GO:0043025
GO:GO:0008270 GO:GO:0051260 GO:GO:0006351 GO:GO:0043621
GO:GO:0043022 GO:GO:0030426 GO:GO:0021522 GO:GO:0030529
GO:GO:0000049 eggNOG:COG1112 InterPro:IPR014001 SMART:SM00487
GO:GO:0043141 HOGENOM:HOG000185831 TIGRFAMs:TIGR00376
Gene3D:4.10.1110.10 GO:GO:0032575 HOVERGEN:HBG077019
OrthoDB:EOG4GHZNJ PANTHER:PTHR10887:SF23 EMBL:L10075
IPI:IPI00113033 PIR:S35633 UniGene:Mm.3179
ProteinModelPortal:P40694 SMR:P40694 IntAct:P40694 STRING:P40694
PhosphoSite:P40694 PaxDb:P40694 PRIDE:P40694 UCSC:uc008fwa.1
InParanoid:P40694 CleanEx:MM_IGHMBP2 Genevestigator:P40694
GermOnline:ENSMUSG00000024831 Uniprot:P40694
Length = 993
Score = 524 (189.5 bits), Expect = 3.3e-57, Sum P(3) = 3.3e-57
Identities = 172/523 (32%), Positives = 261/523 (49%)
Query: 166 RIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEV 225
R+ LA+ +TY+R +ALM L+K H P+ + + L G +E L+ ++
Sbjct: 134 RLLKLANDVTYKRLKKALMTLKK--YHS-GPASSLIDILLGSSTPSPAMEIPPLSFYNT- 189
Query: 226 KLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285
T D SQK+A++ L +K L II GPPGTGKT + EII +AV+QG +VL
Sbjct: 190 --------TLDLSQKEAVSFALAQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCC 240
Query: 286 APTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKS 344
AP+N AVDN+VE+L+ I+R+G+PAR+ +V SL ++ +S A VA+ R+
Sbjct: 241 APSNIAVDNLVERLALCKKRILRLGHPARLLESVQHHSLDAVLARSDNAQIVADI-RRDI 299
Query: 345 DLRKDLRQCLKDDSLAAGIRXXXXXXXXXXXXXXXXXXXXXXSSAQVVLATNTGAA-DPL 403
D + +D R ++A VVLATNTGA+ D
Sbjct: 300 DQVFGKNKKTQDKREKGNFRSEIKLLRKELKEREEAAIVQSLTAADVVLATNTGASSDGP 359
Query: 404 IRRL--DTFDLVG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLA--- 457
++ L D FD+V C A + P++ + K + G L + H LA
Sbjct: 360 LKLLPEDYFDVVVVDECAQALEASCWIPLLKAPKCILAGDHRQLPPTTVS-HRAALAGLS 418
Query: 458 ----TKLTTQYRMNDAIASWASKEMYGGSLISSSTVASH-LLVDTPFVKPTWITQCPLLL 512
+L ++ M+ + +S H P V + P +
Sbjct: 419 RSLMERLAEKHGAGVVRMLTVQYRMHQAIMCWASEAMYHGQFTSHPSVAGHLLKDLPGVT 478
Query: 513 --LDTRLPYGSL-SLGCEE-HLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQS 568
+TR+P + + GC L+ + S N GE +V H+ +L+ AGV IAV +
Sbjct: 479 DTEETRVPLLLIDTAGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIA 538
Query: 569 PYVAQVQHLRERLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRR 627
PY QV LR+ L + PE +E+ ++D FQGRE +AV+++ VRSN G VGFL + RR
Sbjct: 539 PYNLQVDLLRQSLSNKHPE---LEIKSVDGFQGREKEAVLLTFVRSNRKGEVGFLAEDRR 595
Query: 628 MNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+NVA+TRA +HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 596 INVAVTRARRHVAVICDSHTVNNHAFLETLVDYFTEHGEVRTA 638
Score = 67 (28.6 bits), Expect = 3.3e-57, Sum P(3) = 3.3e-57
Identities = 38/138 (27%), Positives = 62/138 (44%)
Query: 72 ICNLFVVSTSTGLGGMHLVLF--RVEGNHR-LPPTTLSPGDMVCVRVCDSRGACATSCIQ 128
+ L V S TGL G LV F R G LP + + GD+V + + AT +
Sbjct: 47 LLKLQVSSQRTGLYGQRLVTFEPRKFGPAVVLPSNSFTSGDIVGLYDTNENSQLATGVLT 106
Query: 129 GFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQK 188
+++VA + H D + L ++ R+ LA+ +TY+R +ALM L+K
Sbjct: 107 RITQK------SVTVAFDESH-DLQLN-LDRENTY--RLLKLANDVTYKRLKKALMTLKK 156
Query: 189 NGLHKRNPSIAAVVTLFG 206
+ P+ + + L G
Sbjct: 157 ---YHSGPASSLIDILLG 171
Score = 53 (23.7 bits), Expect = 3.3e-57, Sum P(3) = 3.3e-57
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 11 SRLDEFTQRMSELLRIERDAELE 33
S ++ F + +LL +ERDAE+E
Sbjct: 4 STVESFVAQQLQLLELERDAEVE 26
>POMBASE|SPCC737.07c [details] [associations]
symbol:SPCC737.07c "DNA polymerase alpha-associated DNA
helicase A (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006273
"lagging strand elongation" evidence=ISO] [GO:0033203 "DNA helicase
A complex" evidence=ISO] [GO:0043141 "ATP-dependent 5'-3' DNA
helicase activity" evidence=ISO] [GO:0043596 "nuclear replication
fork" evidence=IC] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=ISO] InterPro:IPR003593 SMART:SM00382
PomBase:SPCC737.07c GO:GO:0005829 GO:GO:0005524 EMBL:CU329672
GenomeReviews:CU329672_GR eggNOG:COG1112 GO:GO:0006273
GO:GO:0043141 PIR:T41580 RefSeq:NP_588369.1
ProteinModelPortal:O94247 STRING:O94247 EnsemblFungi:SPCC737.07c.1
GeneID:2539412 KEGG:spo:SPCC737.07c HOGENOM:HOG000185831
OMA:ERTIFLE OrthoDB:EOG444PTN NextBio:20800576 GO:GO:0033203
Uniprot:O94247
Length = 660
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 192/648 (29%), Positives = 306/648 (47%)
Query: 29 DAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICNLFVVSTSTGLGGMH 88
D E+EF E + E S P+ L G A + NL + TG GG
Sbjct: 20 DREIEFVDEAQKSEVDETEKSIKRFPLSVLQRKGLA-------LINLRIGVVKTGFGGKT 72
Query: 89 LVLFRVE----GNHRLPPTTLSPGDMVCVRV----CDSRGACATSC-IQGFVHNLGEDGC 139
++ F + LP + SPGD+V +R + T ++G V + E
Sbjct: 73 IIDFEKDPAFSNGEELPANSFSPGDVVSIRQDFQSSKKKRPNETDISVEGVVTRVHERH- 131
Query: 140 TISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIA 199
ISVAL+S P+ R+ ++ L + +TYER ++ +++ RN +
Sbjct: 132 -ISVALKSEEDIPS------SVTRLSVVK-LVNRVTYERMRHTMLEFKRSIPEYRN---S 180
Query: 200 AVVTLFGDKE-DVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQG 258
TL G K+ DV+ +++ + D +K K + SQKKA+ + K L +I G
Sbjct: 181 LFYTLIGRKKADVS-IDQKLIGD---IKY---FNKELNASQKKAVKFSIAVKE-LSLIHG 232
Query: 259 PPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPA 318
PPGTGKT L EII + V + +R+LV +N AVDN+V++LS G+ +VR+G+PAR+ P+
Sbjct: 233 PPGTGKTHTLVEIIQQLVLRNKRILVCGASNLAVDNIVDRLSSSGIPMVRLGHPARLLPS 292
Query: 319 VASKSL---------GEIVKS------KLASFVAEFE--RKKSDLRKDLRQCLKDDSLAA 361
+ SL G++++ S + + + R++ ++ K++R+ KD
Sbjct: 293 ILDHSLDVLSRTGDNGDVIRGISEDIDVCLSKITKTKNGRERREIYKNIRELRKDYRKYE 352
Query: 362 GIRXXXXXXXXXXXXXXXXXXXXXXSSAQVVLATNTGAADPLIRRLDTFDLVG-KRCILA 420
Q A A + L+G + ILA
Sbjct: 353 AKTVANIVSASKVVFCTLHGAGSRQLKGQRFDAVIIDEASQALEPQCWIPLLGMNKVILA 412
Query: 421 GDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYG 480
GD QL+P + S++ +S+ ER ++ L QYRM++ I+ + S Y
Sbjct: 413 GDHMQLSPNVQSKRPY-----ISMFERLVKSQGDLVKCFLNIQYRMHELISKFPSDTFYD 467
Query: 481 GSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYN 540
L+ + V LL+D V+ T +T P+ DT Y E + S N
Sbjct: 468 SKLVPAEEVKKRLLMDLENVEETELTDSPIYFYDTLGNYQEDDRS--EDMQNFYQDSKSN 525
Query: 541 EGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQG 600
EA+IV +H+ L+ AG+ IAV +PY AQV +R+ L + + VE+ ++D QG
Sbjct: 526 HWEAQIVSYHISGLLEAGLEAKDIAVVTPYNAQVALIRQLLKE--KGIEVEMGSVDKVQG 583
Query: 601 READAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
RE +A+I S+VRSN + VGFL + RR+NVAITR +H+ V+ DS+T+
Sbjct: 584 REKEAIIFSLVRSNDVREVGFLAEKRRLNVAITRPKRHLCVIGDSNTV 631
>UNIPROTKB|F1MHU8 [details] [associations]
symbol:IGHMBP2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051260 "protein homooligomerization" evidence=IEA]
[GO:0043141 "ATP-dependent 5'-3' DNA helicase activity"
evidence=IEA] [GO:0043022 "ribosome binding" evidence=IEA]
[GO:0032797 "SMN complex" evidence=IEA] [GO:0032575 "ATP-dependent
5'-3' RNA helicase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000049 "tRNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000058
InterPro:IPR001374 InterPro:IPR003593 InterPro:IPR004483
InterPro:IPR026853 Pfam:PF01424 Pfam:PF01428 PROSITE:PS51039
PROSITE:PS51061 SMART:SM00154 SMART:SM00382 SMART:SM00393
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0051260 GO:GO:0043022
GO:GO:0000049 InterPro:IPR014001 SMART:SM00487 GO:GO:0043141
GO:GO:0032797 GeneTree:ENSGT00700000104572 TIGRFAMs:TIGR00376
Gene3D:4.10.1110.10 GO:GO:0032575 CTD:3508 OMA:HARQRIS
PANTHER:PTHR10887:SF23 EMBL:DAAA02063651 IPI:IPI01017505
RefSeq:XP_003584325.1 RefSeq:XP_003588118.1 UniGene:Bt.103594
Ensembl:ENSBTAT00000044489 GeneID:618606 KEGG:bta:618606
Uniprot:F1MHU8
Length = 981
Score = 547 (197.6 bits), Expect = 5.6e-55, Sum P(2) = 5.6e-55
Identities = 190/590 (32%), Positives = 288/590 (48%)
Query: 104 TLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVR 163
TL P V V S + + I G G+ I + + F + +
Sbjct: 66 TLEPRRCVSAAVLPSN-SFTSGDIVGLYDESGQLATGILTRITQKAVTVAFDESHDSQLS 124
Query: 164 ID-----RIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEEND 218
+D R+ LA+ +TY+R +AL+ L+K H P+ + + LFG +D
Sbjct: 125 LDQEHSYRLLKLANDVTYKRLKKALISLKK---HHAGPASSLIEVLFG---------ASD 172
Query: 219 LADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ 278
+ SE+ D SQ++A+ L++K L II GPPGTGKT + EII +AV++
Sbjct: 173 PSPPSEMPPLTFCNPALDASQQEAVLFALSQKE-LAIIHGPPGTGKTTTVVEIILQAVKR 231
Query: 279 GERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV-KSKLASFVA 337
G +VL AP+N AVDN+VE+L+ I+R+G+PAR+ ++ SL ++ +S A VA
Sbjct: 232 GSKVLCCAPSNVAVDNLVERLAQWKQRILRLGHPARLLDSIQQHSLDAVLARSDSARIVA 291
Query: 338 EFERKKSDLRKDLRQCLKDDSLAAGIRXXXXXXXXXXXXXXXXXXXXXXSSAQVVLATNT 397
+ R R+ +D + R ++A VVLATNT
Sbjct: 292 DIRRDIDQAWAKNRKT-QDKREKSNFRDEIKLLRKELKDREEAAMLESLAAASVVLATNT 350
Query: 398 GA-ADPLIRRL-DT-FDLVG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHE 453
GA AD ++ L D+ FD+V C A + P++ +RK + G L + H+
Sbjct: 351 GASADGPLKLLPDSHFDMVVIDECAQALEASCWIPLLKARKCILAGDHKQLPPTIVS-HK 409
Query: 454 GVLA-TKLTTQYRMNDAIASWASK------EMYGGSLISSSTVASH-LLVDTPFVKPTWI 505
LA L+ R+ + + A + M+ +S H L P V +
Sbjct: 410 AALAGLSLSLMERLAERHGAGALRMLTVQYRMHQAIARWASEALYHGQLTAHPSVAGHLL 469
Query: 506 TQCPLLLL--DTRLPYGSL-SLGCEE-HLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSP 561
P + +T +P + + GC L+ S N GE +V HV +L+ AGV
Sbjct: 470 RDLPGVAATEETGVPLLLVDTAGCGLLELEEDDEQSKGNPGEVRLVGLHVQALVDAGVRA 529
Query: 562 SAIAVQSPYVAQVQHLRERLDD-LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVG 620
+ IAV +PY QV LR+ L LPE +E+ ++D FQGRE +AVI+S VRSN G VG
Sbjct: 530 ADIAVITPYNLQVDLLRQSLAHRLPE---LEIRSVDGFQGREKEAVILSFVRSNRKGEVG 586
Query: 621 FLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
FL + RR+NVA+TRA +HVAVVCDS T+ ++ FL L+ ++ G V+ A
Sbjct: 587 FLAEDRRINVAVTRARRHVAVVCDSRTVSNHAFLKTLVDYLTEHGEVRTA 636
Score = 54 (24.1 bits), Expect = 5.6e-55, Sum P(2) = 5.6e-55
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 13 LDEFTQRMSELLRIERDAELE 33
++ F + ELL +ERDAE+E
Sbjct: 6 VESFVTKQLELLELERDAEVE 26
>UNIPROTKB|P38935 [details] [associations]
symbol:IGHMBP2 "DNA-binding protein SMUBP-2" species:9606
"Homo sapiens" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008219 "cell death" evidence=IEA] [GO:0006412
"translation" evidence=NAS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000049 "tRNA binding" evidence=IDA] [GO:0032797
"SMN complex" evidence=IDA] [GO:0008134 "transcription factor
binding" evidence=IPI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0032575 "ATP-dependent 5'-3' RNA
helicase activity" evidence=IDA] [GO:0043141 "ATP-dependent 5'-3'
DNA helicase activity" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0030424 "axon" evidence=ISS] [GO:0030426 "growth
cone" evidence=ISS] [GO:0043022 "ribosome binding" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0003697
"single-stranded DNA binding" evidence=TAS] [GO:0006260 "DNA
replication" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006310 "DNA recombination" evidence=TAS] [GO:0051260 "protein
homooligomerization" evidence=IPI] [GO:0032508 "DNA duplex
unwinding" evidence=TAS] InterPro:IPR000058 InterPro:IPR001374
InterPro:IPR003593 InterPro:IPR004483 InterPro:IPR026853
Pfam:PF01424 Pfam:PF01428 PROSITE:PS51039 PROSITE:PS51061
SMART:SM00154 SMART:SM00382 SMART:SM00393 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0046872 GO:GO:0006412
GO:GO:0006260 GO:GO:0008219 GO:GO:0030424 GO:GO:0008270
GO:GO:0006281 GO:GO:0051260 GO:GO:0006351 GO:GO:0043022
GO:GO:0000122 GO:GO:0030426 GO:GO:0006310 GO:GO:0003697
GO:GO:0030529 GO:GO:0000049 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 GO:GO:0043141 HOGENOM:HOG000185831 TIGRFAMs:TIGR00376
Orphanet:98920 EMBL:AP000808 Gene3D:4.10.1110.10 GO:GO:0032575
EMBL:L14754 EMBL:L24544 EMBL:BC025299 EMBL:M64979 IPI:IPI00009379
PIR:A47500 RefSeq:NP_002171.2 UniGene:Hs.503048 PDB:1MSZ PDB:2LRR
PDB:4B3F PDB:4B3G PDBsum:1MSZ PDBsum:2LRR PDBsum:4B3F PDBsum:4B3G
ProteinModelPortal:P38935 SMR:P38935 IntAct:P38935 STRING:P38935
PhosphoSite:P38935 DMDM:229462778 PaxDb:P38935 PRIDE:P38935
Ensembl:ENST00000255078 GeneID:3508 KEGG:hsa:3508 UCSC:uc001ook.1
CTD:3508 GeneCards:GC11P068671 H-InvDB:HIX0009884
H-InvDB:HIX0171377 HGNC:HGNC:5542 MIM:600502 MIM:604320
neXtProt:NX_P38935 PharmGKB:PA29731 HOVERGEN:HBG077019
InParanoid:P38935 OMA:HARQRIS OrthoDB:EOG4GHZNJ PhylomeDB:P38935
EvolutionaryTrace:P38935 GenomeRNAi:3508 NextBio:13764
ArrayExpress:P38935 Bgee:P38935 CleanEx:HS_IGHMBP2
Genevestigator:P38935 GermOnline:ENSG00000132740
PANTHER:PTHR10887:SF23 Uniprot:P38935
Length = 993
Score = 526 (190.2 bits), Expect = 2.5e-52, Sum P(2) = 2.5e-52
Identities = 176/523 (33%), Positives = 258/523 (49%)
Query: 166 RIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEV 225
R+ LA+ +TY R +AL+ L+K H P+ + + LFG + SE+
Sbjct: 135 RLLKLANDVTYRRLKKALIALKK--YHS-GPASSLIEVLFGRSAP---------SPASEI 182
Query: 226 KLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285
D SQK+A+ L++K L II GPPGTGKT + EII +AV+QG +VL
Sbjct: 183 HPLTFFNTCLDTSQKEAVLFALSQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCC 241
Query: 286 APTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKS 344
AP+N AVDN+VE+L+ I+R+G+PAR+ ++ SL ++ +S A VA+ RK
Sbjct: 242 APSNIAVDNLVERLALCKQRILRLGHPARLLESIQQHSLDAVLARSDSAQIVADI-RKDI 300
Query: 345 DLRKDLRQCLKDDSLAAGIRXXXXXXXXXXXXXXXXXXXXXXSSAQVVLATNTGA-ADPL 403
D + +D + R +SA VVLATNTGA AD
Sbjct: 301 DQVFVKNKKTQDKREKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGP 360
Query: 404 IRRLDT--FDLVG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLA--- 457
++ L FD+V C A + P++ +RK + G L + H+ LA
Sbjct: 361 LKLLPESYFDVVVIDECAQALEASCWIPLLKARKCILAGDHKQLPPTTVS-HKAALAGLS 419
Query: 458 ----TKLTTQYRMNDAIASWASKEMYGGSLI-SSSTVASHLLVDTPFVKPTWITQCPLLL 512
+L +Y M+ + +S T+ L V + P +
Sbjct: 420 LSLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVA 479
Query: 513 L--DTRLPYGSL-SLGCEE-HLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQS 568
+T +P + + GC L+ S N GE +V H+ +L+ AGV IAV S
Sbjct: 480 ATEETGVPLLLVDTAGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVS 539
Query: 569 PYVAQVQHLRERLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRR 627
PY QV LR+ L PE +E+ ++D FQGRE +AVI+S VRSN G VGFL + RR
Sbjct: 540 PYNLQVDLLRQSLVHRHPE---LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRR 596
Query: 628 MNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+NVA+TRA +HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 597 INVAVTRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTA 639
Score = 51 (23.0 bits), Expect = 2.5e-52, Sum P(2) = 2.5e-52
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 13 LDEFTQRMSELLRIERDAELE 33
++ F + +LL +ERDAE+E
Sbjct: 6 VESFVTKQLDLLELERDAEVE 26
>SGD|S000001500 [details] [associations]
symbol:HCS1 "Hexameric DNA polymerase alpha-associated DNA
helicase A" species:4932 "Saccharomyces cerevisiae" [GO:0003677
"DNA binding" evidence=IEA] [GO:0043141 "ATP-dependent 5'-3' DNA
helicase activity" evidence=IDA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IDA] [GO:0006273 "lagging
strand elongation" evidence=IC] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0033203 "DNA helicase A
complex" evidence=IDA] InterPro:IPR003593 InterPro:IPR004483
SMART:SM00382 SGD:S000001500 GO:GO:0005524 GO:GO:0005737
GO:GO:0003677 EMBL:BK006944 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 EMBL:X74152 GO:GO:0006273 GO:GO:0043141
HOGENOM:HOG000185831 OrthoDB:EOG444PTN GO:GO:0033203 EMBL:Z28017
PIR:S34700 RefSeq:NP_012908.1 ProteinModelPortal:P34243 SMR:P34243
DIP:DIP-1383N IntAct:P34243 MINT:MINT-399891 STRING:P34243
PaxDb:P34243 EnsemblFungi:YKL017C GeneID:853852 KEGG:sce:YKL017C
CYGD:YKL017c GeneTree:ENSGT00700000104572 OMA:QGGDFPE
SABIO-RK:P34243 NextBio:975085 Genevestigator:P34243
GermOnline:YKL017C TIGRFAMs:TIGR00376 Uniprot:P34243
Length = 683
Score = 360 (131.8 bits), Expect = 2.3e-42, Sum P(2) = 2.3e-42
Identities = 98/262 (37%), Positives = 140/262 (53%)
Query: 402 PLIRRLDTFDLVGKRCILAGDQCQLAPVILSR--KALEGGIGVSLLERAATLHEGVLATK 459
PLI + F + +LAGD QL P I + K + + +L +R + K
Sbjct: 408 PLIAHQNQFH----KLVLAGDNKQLPPTIKTEDDKNVIHNLETTLFDRIIKIFPKRDMVK 463
Query: 460 -LTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP 518
L QYRMN I + S MY G L++ +TVA+ LL+D P V T DT++P
Sbjct: 464 FLNVQYRMNQKIMEFPSHSMYNGKLLADATVANRLLIDLPTVDATPSEDDD----DTKIP 519
Query: 519 ---YGSLSLGCEEHLDLAGT-GSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV 574
Y + +E D A GS YNEGE IV H+ +L V ++I V SPY AQV
Sbjct: 520 LIWYDTQGDEFQETADEATILGSKYNEGEIAIVKEHIENLRSFNVPENSIGVISPYNAQV 579
Query: 575 QHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITR 634
HL++ + D + +E++T+D FQGRE D +I+S+VRSN VGFL + RR+NVA+TR
Sbjct: 580 SHLKKLIHDELKLTDIEISTVDGFQGREKDVIILSLVRSNEKFEVGFLKEERRLNVAMTR 639
Query: 635 ACKHVAVVCDSSTI--CHNTFL 654
+ + VV + + C N +L
Sbjct: 640 PRRQLVVVGNIEVLQRCGNKYL 661
Score = 162 (62.1 bits), Expect = 2.3e-42, Sum P(2) = 2.3e-42
Identities = 40/109 (36%), Positives = 65/109 (59%)
Query: 227 LDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG--ERVLV 284
+ + +DSQK AI +N L II GPPGTGKT L E+I + + + ER+L+
Sbjct: 200 IKSFLNPNLNDSQKTAINFAINND--LTIIHGPPGTGKTFTLIELIQQLLIKNPEERILI 257
Query: 285 TAPTNAAVDNMVEKLSDVGLN--IVRVGNPARISPAVASKSLGEIVKSK 331
P+N +VD ++E+L+ + N ++R+G+PAR+ + SL +I+ K
Sbjct: 258 CGPSNISVDTILERLTPLVPNNLLLRIGHPARLLDSNKRHSL-DILSKK 305
>TAIR|locus:2171007 [details] [associations]
symbol:LBA1 "LOW-LEVEL BETA-AMYLASE 1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM;IDA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA;IMP] [GO:0016246 "RNA interference" evidence=IGI]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IMP] [GO:0005829 "cytosol" evidence=IDA;RCA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0042742 "defense
response to bacterium" evidence=IMP] [GO:0009755 "hormone-mediated
signaling pathway" evidence=RCA] [GO:0048825 "cotyledon
development" evidence=RCA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0009744 "response to sucrose stimulus"
evidence=IGI] InterPro:IPR018999 Pfam:PF09416 GO:GO:0005829
GO:GO:0005886 GO:GO:0009506 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0016246 GO:GO:0000184 GO:GO:0046872
GO:GO:0003677 GO:GO:0009744 GO:GO:0008270 GO:GO:0010182
GO:GO:0004386 GO:GO:0000932 eggNOG:COG1112 InterPro:IPR014001
PROSITE:PS51192 EMBL:AB013394 HOGENOM:HOG000205990 KO:K14326
OMA:MFYEGSL EMBL:AF484122 IPI:IPI00541997 RefSeq:NP_199512.2
UniGene:At.8584 ProteinModelPortal:Q9FJR0 SMR:Q9FJR0 STRING:Q9FJR0
PaxDb:Q9FJR0 PRIDE:Q9FJR0 EnsemblPlants:AT5G47010.1 GeneID:834747
KEGG:ath:AT5G47010 GeneFarm:2422 TAIR:At5g47010 InParanoid:Q9FJR0
PhylomeDB:Q9FJR0 ProtClustDB:CLSN2680462 Genevestigator:Q9FJR0
GermOnline:AT5G47010 Uniprot:Q9FJR0
Length = 1254
Score = 447 (162.4 bits), Expect = 3.8e-39, P = 3.8e-39
Identities = 146/451 (32%), Positives = 215/451 (47%)
Query: 229 GIMG-KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTA 286
G+ G + SQ A+ L K P+ +IQGPPGTGKT I+ +QG+ +VLV A
Sbjct: 482 GVPGLPELNASQVNAVKSVLQK--PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 539
Query: 287 PTNAAVDNMVEKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKS 344
P+N AVD + EK+S GL +VR+ +R +S V +L V+ S +E K
Sbjct: 540 PSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEYLTLHYQVRHLDTSEKSELH-KLQ 598
Query: 345 DLRKDLRQCLKDD-----SLAAGIRXXXXXXXXXXXXXXXXXXXXXXSS---AQVVLATN 396
L+ + + D +L S+ QV++ +
Sbjct: 599 QLKDEQGELSSSDEKKYKNLKRATEREITQSADVICCTCVGAADLRLSNFRFRQVLIDES 658
Query: 397 TGAADPLIRRLDTFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVL 456
T A +P L L K+ +L GD CQL PVI+ +KA G+ SL ER TL G+
Sbjct: 659 TQATEP--ECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVTL--GIK 714
Query: 457 ATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTR 516
+L QYRM+ A++ + S Y G+L + T+ F P + P+
Sbjct: 715 PIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTIIERQTTGIDFPWP--VPNRPMFF---- 768
Query: 517 LPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ--- 573
Y + LG EE + +GT S+ N EA V V + + +GV PS I V +PY Q
Sbjct: 769 --Y--VQLGQEE-ISASGT-SYLNRTEAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAY 822
Query: 574 VQHLRERLDDLPEAA--GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVA 631
+ + R L + +EVA++DSFQGRE D +I+S VRSN +GFL D RR+NVA
Sbjct: 823 IVNYMARNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVA 882
Query: 632 ITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
+TRA + ++ + + LL H +
Sbjct: 883 LTRARYGIVILGNPKVLSKQPLWNGLLTHYK 913
>CGD|CAL0003666 [details] [associations]
symbol:NAM7 species:5476 "Candida albicans" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0005829 "cytosol" evidence=IEA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IEA] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
InterPro:IPR003593 InterPro:IPR018999 Pfam:PF09416 SMART:SM00382
CGD:CAL0003666 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0003677 GO:GO:0008270 GO:GO:0004386 eggNOG:COG1112
InterPro:IPR014001 SMART:SM00487 EMBL:AACQ01000063
EMBL:AACQ01000062 KO:K14326 RefSeq:XP_716778.1 RefSeq:XP_716838.1
ProteinModelPortal:Q5A507 SMR:Q5A507 STRING:Q5A507 GeneID:3641489
GeneID:3641540 KEGG:cal:CaO19.8554 KEGG:cal:CaO19.939
Uniprot:Q5A507
Length = 1019
Score = 439 (159.6 bits), Expect = 6.3e-39, Sum P(2) = 6.3e-39
Identities = 143/443 (32%), Positives = 221/443 (49%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG-ERVLVTAPTNAAVDNMV 296
SQ A+ L +RPL +IQGPPGTGKT II + +++LV AP+N AVD++
Sbjct: 444 SQTNAVRTVL--QRPLSLIQGPPGTGKTVTSATIIYHLSKLNKQKILVCAPSNVAVDHLA 501
Query: 297 EKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRK----DL 350
KL +GLN+VR+ +R + +V+ +L +V S + + + K+ + + D
Sbjct: 502 AKLDLLGLNVVRLTAKSREDVESSVSHLALHNLVNSNAKGELKKLIKLKNQVGELSVADT 561
Query: 351 RQCLKDDSLAAGIRXXXXXXXXXXXXXXXXXXXXXXSSAQVVLAT-NTGAADPLIRRLDT 409
LK S ++ ++ + VL +T A++P + L
Sbjct: 562 NNYLKL-SRSSEMKVLNKAEVVCCTCVGAADRRLSQFRFKTVLIDESTQASEPEV--LIP 618
Query: 410 FDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
K+ IL GD QL PVIL +KA + G+ SL ER L G + +L QYRM+
Sbjct: 619 IVKGAKQVILVGDHQQLGPVILDKKAADAGLKQSLFERLVFL--GHVPIRLEVQYRMHPC 676
Query: 470 IASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEH 529
++ + S Y GSL + T L+ ++ F P W P++ DT + + + + G EE
Sbjct: 677 LSEFPSNMFYEGSLQNGVTSDDRLIEESTF--P-W----PVI--DTPMMFWA-NYGREE- 725
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ----VQHLRER---LD 582
L +G S+ N EA V + L G+ P I V +PY Q VQ + LD
Sbjct: 726 LSASGN-SYLNRVEAMNVEKIITKLFKDGIKPEQIGVITPYEGQRAYLVQFMSVNSTLLD 784
Query: 583 DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVV 642
+ VE+ ++D+FQGRE D +I+S VR+N ++GFL D RR+NVA+TRA + ++
Sbjct: 785 KRDQYLNVEITSVDAFQGREKDFIILSCVRANDSQSIGFLSDPRRLNVALTRAKYGLVIL 844
Query: 643 CDSSTICHNTFLARLLRHIRYFG 665
+ ++C N LL H R G
Sbjct: 845 GNPRSLCRNRLWNHLLIHFREKG 867
Score = 49 (22.3 bits), Expect = 6.3e-39, Sum P(2) = 6.3e-39
Identities = 15/67 (22%), Positives = 30/67 (44%)
Query: 36 QEELNAVPTPDENSDSSKPIEFLVSH-G-RAPQEL--CDTICNLFVVSTSTGLGGMHLVL 91
++ +++ T D + DS + E ++ G P + C+T CN + + T H+V
Sbjct: 70 EQAVHSYATHDTDEDSEQHYEHACAYCGIHNPNSVIKCNT-CNKWFCNAKTNSSSSHIVT 128
Query: 92 FRVEGNH 98
+ H
Sbjct: 129 HLIMSRH 135
>UNIPROTKB|Q5A507 [details] [associations]
symbol:NAM7 "Putative uncharacterized protein NAM7"
species:237561 "Candida albicans SC5314" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR003593 InterPro:IPR018999
Pfam:PF09416 SMART:SM00382 CGD:CAL0003666 GO:GO:0005524
GO:GO:0005737 GO:GO:0000184 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 eggNOG:COG1112 InterPro:IPR014001 SMART:SM00487
EMBL:AACQ01000063 EMBL:AACQ01000062 KO:K14326 RefSeq:XP_716778.1
RefSeq:XP_716838.1 ProteinModelPortal:Q5A507 SMR:Q5A507
STRING:Q5A507 GeneID:3641489 GeneID:3641540 KEGG:cal:CaO19.8554
KEGG:cal:CaO19.939 Uniprot:Q5A507
Length = 1019
Score = 439 (159.6 bits), Expect = 6.3e-39, Sum P(2) = 6.3e-39
Identities = 143/443 (32%), Positives = 221/443 (49%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG-ERVLVTAPTNAAVDNMV 296
SQ A+ L +RPL +IQGPPGTGKT II + +++LV AP+N AVD++
Sbjct: 444 SQTNAVRTVL--QRPLSLIQGPPGTGKTVTSATIIYHLSKLNKQKILVCAPSNVAVDHLA 501
Query: 297 EKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRK----DL 350
KL +GLN+VR+ +R + +V+ +L +V S + + + K+ + + D
Sbjct: 502 AKLDLLGLNVVRLTAKSREDVESSVSHLALHNLVNSNAKGELKKLIKLKNQVGELSVADT 561
Query: 351 RQCLKDDSLAAGIRXXXXXXXXXXXXXXXXXXXXXXSSAQVVLAT-NTGAADPLIRRLDT 409
LK S ++ ++ + VL +T A++P + L
Sbjct: 562 NNYLKL-SRSSEMKVLNKAEVVCCTCVGAADRRLSQFRFKTVLIDESTQASEPEV--LIP 618
Query: 410 FDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
K+ IL GD QL PVIL +KA + G+ SL ER L G + +L QYRM+
Sbjct: 619 IVKGAKQVILVGDHQQLGPVILDKKAADAGLKQSLFERLVFL--GHVPIRLEVQYRMHPC 676
Query: 470 IASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEH 529
++ + S Y GSL + T L+ ++ F P W P++ DT + + + + G EE
Sbjct: 677 LSEFPSNMFYEGSLQNGVTSDDRLIEESTF--P-W----PVI--DTPMMFWA-NYGREE- 725
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ----VQHLRER---LD 582
L +G S+ N EA V + L G+ P I V +PY Q VQ + LD
Sbjct: 726 LSASGN-SYLNRVEAMNVEKIITKLFKDGIKPEQIGVITPYEGQRAYLVQFMSVNSTLLD 784
Query: 583 DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVV 642
+ VE+ ++D+FQGRE D +I+S VR+N ++GFL D RR+NVA+TRA + ++
Sbjct: 785 KRDQYLNVEITSVDAFQGREKDFIILSCVRANDSQSIGFLSDPRRLNVALTRAKYGLVIL 844
Query: 643 CDSSTICHNTFLARLLRHIRYFG 665
+ ++C N LL H R G
Sbjct: 845 GNPRSLCRNRLWNHLLIHFREKG 867
Score = 49 (22.3 bits), Expect = 6.3e-39, Sum P(2) = 6.3e-39
Identities = 15/67 (22%), Positives = 30/67 (44%)
Query: 36 QEELNAVPTPDENSDSSKPIEFLVSH-G-RAPQEL--CDTICNLFVVSTSTGLGGMHLVL 91
++ +++ T D + DS + E ++ G P + C+T CN + + T H+V
Sbjct: 70 EQAVHSYATHDTDEDSEQHYEHACAYCGIHNPNSVIKCNT-CNKWFCNAKTNSSSSHIVT 128
Query: 92 FRVEGNH 98
+ H
Sbjct: 129 HLIMSRH 135
>WB|WBGene00004880 [details] [associations]
symbol:smg-2 species:6239 "Caenorhabditis elegans"
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IGI] [GO:0005737 "cytoplasm"
evidence=IEA;IDA;TAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0030538
"embryonic genitalia morphogenesis" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0051721 "protein phosphatase 2A
binding" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR003593 InterPro:IPR018999 Pfam:PF09416 SMART:SM00382
EMBL:AF074017 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016246 GO:GO:0000184 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003723 GO:GO:0040035 eggNOG:COG1112
GO:GO:0004004 GO:GO:0030538 HOGENOM:HOG000205990 KO:K14326
EMBL:FO081800 PIR:T43280 RefSeq:NP_490829.1
ProteinModelPortal:O76512 SMR:O76512 MINT:MINT-255670 STRING:O76512
PaxDb:O76512 GeneID:171696 KEGG:cel:CELE_Y48G8AL.6 UCSC:Y48G8AL.6
CTD:171696 WormBase:Y48G8AL.6 InParanoid:O76512 NextBio:872341
Uniprot:O76512
Length = 1069
Score = 428 (155.7 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
Identities = 172/546 (31%), Positives = 252/546 (46%)
Query: 145 LESRHGDPTFSKLFG---KSVRIDRIQGLADTL----TYERNCEALMLLQKNGLHKRNPS 197
+ HGD ++ G KSV RI D + T+ER +AL L N +P
Sbjct: 357 IPDNHGDEVGIEIRGAVDKSVMESRIMFTVDVVWNATTFERQYKALAALL-NDSKAISPY 415
Query: 198 IAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQ 257
+ L G + L+ DL + + G+ + SQ +A+ L RPL +IQ
Sbjct: 416 LYQ--KLLGHPAEEMMLKF-DLP--RRLSVAGL--PELNSSQMQAVKQVLT--RPLSLIQ 466
Query: 258 GPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPAR-- 314
GPPGTGKT + I+ VQ+ E VLV +P+N AVD++ EK+ GL +VR+ +R
Sbjct: 467 GPPGTGKTVVSATIVYHLVQKTEGNVLVCSPSNIAVDHLAEKIHKTGLKVVRLCARSREH 526
Query: 315 ---ISPAVAS----KSLGEIVKSKLASFVAEF-ERK-KSDLRKDLRQCLKDDSLAAGIRX 365
P + K +G KL E E + K DLR + +K+ L A
Sbjct: 527 SETTVPYLTLQHQLKVMGGAELQKLIQLKDEAGELEFKDDLRYMQLKRVKEHELLAA--- 583
Query: 366 XXXXXXXXXXXXXXXXXXXXXSSAQVVLATNTGAADPLIRRLDTFDLVGKRCILAGDQCQ 425
+ V++ +T A +P I L + ++ +L GD CQ
Sbjct: 584 --ADVICCTCSSAADARLSKIRTRTVLIDESTQATEPEI--LVSIMRGVRQLVLVGDHCQ 639
Query: 426 LAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLIS 485
L PV++ +KA G+ SL ER L G+ +L QYRM+ ++ + S Y GSL +
Sbjct: 640 LGPVVICKKAAIAGLSQSLFERLVLL--GIRPFRLQVQYRMHPVLSEFPSNVFYDGSLQN 697
Query: 486 SSTVAS-HLL-VDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGE 543
T H+ VD + KP P + S G EE L +GT SF N E
Sbjct: 698 GVTENDRHMTGVDWHWPKPNK----PAF-------FWHCS-GSEE-LSASGT-SFLNRTE 743
Query: 544 AEIVVHHVFSLICAGVSPSAIAV------QSPYVAQVQHLRERLDD-LPEAAGVEVATID 596
A V V LI AGV P I V Q ++ H + L+ L E VE+A++D
Sbjct: 744 AANVEKLVSKLIKAGVQPHQIGVITSYEGQRSFIVNYMHTQGTLNSKLYE--NVEIASVD 801
Query: 597 SFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLAR 656
+FQGRE D +I++ VRSN + +GFL D RR+NVAITRA + +V ++ + +
Sbjct: 802 AFQGREKDYIIVTCVRSNDILGIGFLSDPRRLNVAITRAKYGLVLVGNAKVLARHDLWHE 861
Query: 657 LLRHIR 662
L+ H +
Sbjct: 862 LINHYK 867
Score = 56 (24.8 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
Identities = 29/112 (25%), Positives = 43/112 (38%)
Query: 35 TQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELC------D-------TICNLFVVSTS 81
T +L D+ SDS K + + P+ C D T+C + +++
Sbjct: 61 TTNDLPFHDVEDDESDSEKSLTEEQHEQKLPEHACRYCGISDPLCVAKCTVCRKWFCNSN 120
Query: 82 TGLGGMHLVLFRVEGNHRLPPTTL-SP-GD--MVCVRVCDSRGACATSCIQG 129
G G H+V V H+ T SP GD + C R C S+ I G
Sbjct: 121 DGTSGGHIVHHMVRSQHKEAYTHKDSPCGDTQLECYR-CGSKNVFNLGFIPG 171
>CGD|CAL0006154 [details] [associations]
symbol:orf19.6199 species:5476 "Candida albicans" [GO:0043141
"ATP-dependent 5'-3' DNA helicase activity" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0033203 "DNA helicase
A complex" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003593 InterPro:IPR004483 SMART:SM00382
CGD:CAL0006154 GO:GO:0005524 GO:GO:0003677 GO:GO:0017111
eggNOG:COG1112 InterPro:IPR014001 SMART:SM00487 EMBL:AACQ01000038
EMBL:AACQ01000037 TIGRFAMs:TIGR00376 RefSeq:XP_718706.1
RefSeq:XP_718790.1 ProteinModelPortal:Q5AAW1 STRING:Q5AAW1
GeneID:3639532 GeneID:3639630 KEGG:cal:CaO19.13579
KEGG:cal:CaO19.6199 Uniprot:Q5AAW1
Length = 719
Score = 290 (107.1 bits), Expect = 1.6e-37, Sum P(3) = 1.6e-37
Identities = 83/250 (33%), Positives = 129/250 (51%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGG----------IGVSLLERAATLHEGVLATKLT-TQ 463
KR ++AGD QL P I ++K+ + +L +R G KL Q
Sbjct: 432 KRLVIAGDNMQLPPTIKTQKSNSSSPSSSSSSASILATTLFDRLMKHCHGEKYKKLLDVQ 491
Query: 464 YRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLS 523
YRMN +I + S ++Y L +V LVD P V+ T + DT+ G
Sbjct: 492 YRMNKSIMQFPSMQLYDNQLKCDDSVREISLVDLPGVEINDDTMTKCIWYDTQ--GGEFP 549
Query: 524 LGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD- 582
E +D G S YN+ E +V H+ L+ +GV P I V +PY AQVQ+L++++
Sbjct: 550 EQISESID--GD-SKYNDMELLVVKGHIKKLLSSGVQPQDIGVIAPYSAQVQNLKKQMGL 606
Query: 583 --DLPEAAG------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITR 634
++ +A +E++T+D FQGRE + +I+++VRSN +GFL + RR+NVA+TR
Sbjct: 607 GGEVGSSANGDKDGQIEISTVDGFQGREKEVIILTLVRSNDSREIGFLSEQRRLNVAMTR 666
Query: 635 ACKHVAVVCD 644
+ + VV D
Sbjct: 667 PKRQLCVVGD 676
Score = 184 (69.8 bits), Expect = 1.6e-37, Sum P(3) = 1.6e-37
Identities = 59/227 (25%), Positives = 115/227 (50%)
Query: 140 TISVALESRHGDPTFSKLFGK---SVRIDRIQGLADTLTYER---NCEALMLLQ---KNG 190
TIS++++ D + + S R+ ++ L +++TY+R + ++ ++ KN
Sbjct: 131 TISISVDESTDDSKILQYYNNTNDSARMWLVK-LTNSITYKRMITTMDKVLAMKESDKND 189
Query: 191 LHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKK 250
+HK L G+ + + + N ++ + +++ K + SQ++AI +N
Sbjct: 190 IHK---------ILLGESQYIP--KSNGTSNNNNGEINFFNDK-LNASQRQAIDFAINDS 237
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDV--GLNIVR 308
+ II GPPGTGKT L E+I + +GE+VLV P+N +VD ++E+L D + ++R
Sbjct: 238 N-ITIIHGPPGTGKTYTLIELIQQLTSKGEKVLVCGPSNISVDTILERLGDKYEPMKLIR 296
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLK 355
+G+PAR+ SL + K+ + E + +++C K
Sbjct: 297 IGHPARLLMKNLQHSLEILSKTYGRDIINEILNDIQSVLTKIKKCKK 343
Score = 52 (23.4 bits), Expect = 1.6e-37, Sum P(3) = 1.6e-37
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFRVEG---NHRLPPTTLSPGDMV 111
I NL +V+ TGLGG ++ + + + + +TL GD+V
Sbjct: 41 IINLQIVNIRTGLGGKTILELQFDSAFSDGEINTSTLRTGDIV 83
>UNIPROTKB|Q5AAW1 [details] [associations]
symbol:HCS1 "Putative uncharacterized protein HCS1"
species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003593
InterPro:IPR004483 SMART:SM00382 CGD:CAL0006154 GO:GO:0005524
GO:GO:0003677 GO:GO:0017111 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 EMBL:AACQ01000038 EMBL:AACQ01000037
TIGRFAMs:TIGR00376 RefSeq:XP_718706.1 RefSeq:XP_718790.1
ProteinModelPortal:Q5AAW1 STRING:Q5AAW1 GeneID:3639532
GeneID:3639630 KEGG:cal:CaO19.13579 KEGG:cal:CaO19.6199
Uniprot:Q5AAW1
Length = 719
Score = 290 (107.1 bits), Expect = 1.6e-37, Sum P(3) = 1.6e-37
Identities = 83/250 (33%), Positives = 129/250 (51%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGG----------IGVSLLERAATLHEGVLATKLT-TQ 463
KR ++AGD QL P I ++K+ + +L +R G KL Q
Sbjct: 432 KRLVIAGDNMQLPPTIKTQKSNSSSPSSSSSSASILATTLFDRLMKHCHGEKYKKLLDVQ 491
Query: 464 YRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLS 523
YRMN +I + S ++Y L +V LVD P V+ T + DT+ G
Sbjct: 492 YRMNKSIMQFPSMQLYDNQLKCDDSVREISLVDLPGVEINDDTMTKCIWYDTQ--GGEFP 549
Query: 524 LGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD- 582
E +D G S YN+ E +V H+ L+ +GV P I V +PY AQVQ+L++++
Sbjct: 550 EQISESID--GD-SKYNDMELLVVKGHIKKLLSSGVQPQDIGVIAPYSAQVQNLKKQMGL 606
Query: 583 --DLPEAAG------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITR 634
++ +A +E++T+D FQGRE + +I+++VRSN +GFL + RR+NVA+TR
Sbjct: 607 GGEVGSSANGDKDGQIEISTVDGFQGREKEVIILTLVRSNDSREIGFLSEQRRLNVAMTR 666
Query: 635 ACKHVAVVCD 644
+ + VV D
Sbjct: 667 PKRQLCVVGD 676
Score = 184 (69.8 bits), Expect = 1.6e-37, Sum P(3) = 1.6e-37
Identities = 59/227 (25%), Positives = 115/227 (50%)
Query: 140 TISVALESRHGDPTFSKLFGK---SVRIDRIQGLADTLTYER---NCEALMLLQ---KNG 190
TIS++++ D + + S R+ ++ L +++TY+R + ++ ++ KN
Sbjct: 131 TISISVDESTDDSKILQYYNNTNDSARMWLVK-LTNSITYKRMITTMDKVLAMKESDKND 189
Query: 191 LHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKK 250
+HK L G+ + + + N ++ + +++ K + SQ++AI +N
Sbjct: 190 IHK---------ILLGESQYIP--KSNGTSNNNNGEINFFNDK-LNASQRQAIDFAINDS 237
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDV--GLNIVR 308
+ II GPPGTGKT L E+I + +GE+VLV P+N +VD ++E+L D + ++R
Sbjct: 238 N-ITIIHGPPGTGKTYTLIELIQQLTSKGEKVLVCGPSNISVDTILERLGDKYEPMKLIR 296
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLK 355
+G+PAR+ SL + K+ + E + +++C K
Sbjct: 297 IGHPARLLMKNLQHSLEILSKTYGRDIINEILNDIQSVLTKIKKCKK 343
Score = 52 (23.4 bits), Expect = 1.6e-37, Sum P(3) = 1.6e-37
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFRVEG---NHRLPPTTLSPGDMV 111
I NL +V+ TGLGG ++ + + + + +TL GD+V
Sbjct: 41 IINLQIVNIRTGLGGKTILELQFDSAFSDGEINTSTLRTGDIV 83
>UNIPROTKB|G4ND47 [details] [associations]
symbol:MGG_00976 "Regulator-nonsense transcripts 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR018999 Pfam:PF09416
GO:GO:0005524 GO:GO:0005737 EMBL:CM001235 GO:GO:0003677
GO:GO:0008270 GO:GO:0016567 GO:GO:0030466 GO:GO:0004386
GO:GO:0008298 InterPro:IPR014001 SMART:SM00487 GO:GO:0070478
KO:K14326 RefSeq:XP_003717973.1 ProteinModelPortal:G4ND47
SMR:G4ND47 EnsemblFungi:MGG_00976T0 GeneID:2674784
KEGG:mgr:MGG_00976 Uniprot:G4ND47
Length = 1105
Score = 435 (158.2 bits), Expect = 5.2e-37, Sum P(2) = 5.2e-37
Identities = 148/451 (32%), Positives = 214/451 (47%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVDNMV 296
SQ AI L+ PL +IQGPPGTGKT II A G +VLV AP+N AVD +
Sbjct: 455 SQISAIKAVLST--PLSLIQGPPGTGKTVTSATIIYHLAKMNGSQVLVCAPSNVAVDQLC 512
Query: 297 EKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFER-KKSDLRKDLRQCLK 355
E++ GL +VR+ +R E V+S + SF+A E+ + +D +L K
Sbjct: 513 ERVHRTGLKVVRLTAKSR-----------EDVESSV-SFLALHEQVRMNDTNPELA---K 557
Query: 356 DDSLAAGIRXXXXXXXXXXXXXXXXXXXXXXSSAQVVLATNTGAADPLIRRLD----TFD 411
L + + S+A VV T GA DP + +L D
Sbjct: 558 LQQLKSELGELSSQDEKKFKQLTKAAEREILSNADVVCCTCVGAGDPRLAKLKFRNVLID 617
Query: 412 --------------LVG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVL 456
++G K+ +L GD QL PVI+++KA + G+ SL ER L G+
Sbjct: 618 ESTQSAEPECMIPLVLGCKQVVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLVKL--GLT 675
Query: 457 ATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTR 516
+L QYRM+ ++ + S Y GSL + T+ L D F P + P++
Sbjct: 676 PIRLNVQYRMHPCLSEFPSNMFYEGSLQNGVTIQQRLRRDVDFPWP--VADMPMMFWS-- 731
Query: 517 LPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH 576
+LG EE + +GT S+ N EA V V AGV P I V +PY Q +
Sbjct: 732 ------NLGNEE-ISASGT-SYLNRTEASNVEKLVTRFFKAGVKPGDIGVVTPYEGQRSY 783
Query: 577 LRERLDDL----PEA-AGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVA 631
+ + + E+ VEVA++D+FQGRE D +++S VRSN +GFL D RR+NVA
Sbjct: 784 IVSTMQNTGTFKKESYKEVEVASVDAFQGREKDFIVLSCVRSNESQGIGFLSDPRRLNVA 843
Query: 632 ITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
+TRA V ++ + + + LL H R
Sbjct: 844 LTRAKYGVVIIGNPKVLSKHELWHHLLIHFR 874
Score = 37 (18.1 bits), Expect = 5.2e-37, Sum P(2) = 5.2e-37
Identities = 7/35 (20%), Positives = 20/35 (57%)
Query: 207 DKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKK 241
D ++ L+++D + V +DG+ G + ++++
Sbjct: 57 DDDETEALDDDDDESLASVPVDGMRGLSLKAAEEE 91
>SGD|S000004685 [details] [associations]
symbol:NAM7 "ATP-dependent RNA helicase of the SFI
superfamily" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=IMP] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=IGI;IMP] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=TAS] [GO:0016567 "protein ubiquitination"
evidence=IMP;IDA;IPI] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005844 "polysome" evidence=TAS] [GO:0003676 "nucleic acid
binding" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA;TAS]
[GO:0006449 "regulation of translational termination" evidence=TAS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030466 "chromatin
silencing at silent mating-type cassette" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006452 "translational frameshifting" evidence=IMP] [GO:0008186
"RNA-dependent ATPase activity" evidence=TAS] InterPro:IPR003593
InterPro:IPR018999 Pfam:PF09416 SMART:SM00382 SGD:S000004685
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003676 GO:GO:0016567
GO:GO:0030466 EMBL:BK006946 EMBL:Z49259 GO:GO:0005844 GO:GO:0008298
eggNOG:COG1112 InterPro:IPR014001 SMART:SM00487 GO:GO:0004004
GO:GO:0070478 GO:GO:0006449 GeneTree:ENSGT00550000074391
EMBL:X62394 EMBL:M76659 PIR:S23408 RefSeq:NP_013797.1 PDB:2XZL
PDBsum:2XZL ProteinModelPortal:P30771 SMR:P30771 DIP:DIP-2373N
IntAct:P30771 MINT:MINT-492322 STRING:P30771 PaxDb:P30771
PeptideAtlas:P30771 EnsemblFungi:YMR080C GeneID:855104
KEGG:sce:YMR080C CYGD:YMR080c HOGENOM:HOG000205990 KO:K14326
OMA:MFYEGSL OrthoDB:EOG405W86 EvolutionaryTrace:P30771
NextBio:978431 Genevestigator:P30771 GermOnline:YMR080C
Uniprot:P30771
Length = 971
Score = 431 (156.8 bits), Expect = 8.8e-37, Sum P(2) = 8.8e-37
Identities = 142/446 (31%), Positives = 216/446 (48%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDN 294
+ SQ A++ L +RPL +IQGPPGTGKT I+ + +R+LV AP+N AVD+
Sbjct: 410 NSSQSNAVSHVL--QRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDH 467
Query: 295 MVEKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIV----KSKLASFVA---EF-ERKKS 344
+ KL D+GL +VR+ +R + +V++ +L +V K +L + + E E S
Sbjct: 468 LAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSAS 527
Query: 345 DLRKDLRQCLKDDSLAAGIRXXXXXXXXXXXXXXXXXXXXXXSSAQVVLATNTGAADPLI 404
D ++ ++ K ++ V++ +T A++P
Sbjct: 528 DTKRFVKLVRKTEA-----EILNKADVVCCTCVGAGDKRLDTKFRTVLIDESTQASEP-- 580
Query: 405 RRLDTFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQY 464
L K+ IL GD QL PVIL RKA + G+ SL ER +L G + +L QY
Sbjct: 581 ECLIPIVKGAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLISL--GHVPIRLEVQY 638
Query: 465 RMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSL 524
RMN ++ + S Y GSL + T+ + ++ F P I P++ YG
Sbjct: 639 RMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWP--IRGIPMMFWAN---YG---- 689
Query: 525 GCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD-- 582
E + GT SF N EA + L GV P I V +PY Q ++ + +
Sbjct: 690 --REEISANGT-SFLNRIEAMNCERIITKLFRDGVKPEQIGVITPYEGQRAYILQYMQMN 746
Query: 583 ---DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
D VEVA++D+FQGRE D +I+S VR+N A+GFL D RR+NV +TRA +
Sbjct: 747 GSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGL 806
Query: 640 AVVCDSSTICHNTFLARLLRHIRYFG 665
++ + ++ NT LL H R G
Sbjct: 807 VILGNPRSLARNTLWNHLLIHFREKG 832
Score = 37 (18.1 bits), Expect = 8.8e-37, Sum P(2) = 8.8e-37
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 69 CDTICNLFVVSTSTGLGGMHLVLFRVEGNHRL 100
C++ C + +T G H+V V +H +
Sbjct: 76 CNS-CKKWFCNTKNGTSSSHIVNHLVLSHHNV 106
>ASPGD|ASPL0000056713 [details] [associations]
symbol:AN0646 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR003593 InterPro:IPR018999 Pfam:PF09416 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 EMBL:BN001308 GO:GO:0003677
GO:GO:0008270 GO:GO:0016567 GO:GO:0030466 GO:GO:0004386
GO:GO:0008298 InterPro:IPR014001 SMART:SM00487 GO:GO:0070478
HOGENOM:HOG000205990 OMA:MFYEGSL ProteinModelPortal:C8VS08
EnsemblFungi:CADANIAT00002030 Uniprot:C8VS08
Length = 1077
Score = 413 (150.4 bits), Expect = 2.1e-35, P = 2.1e-35
Identities = 139/427 (32%), Positives = 209/427 (48%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT II + G +VLV AP+N AVD + E++ GL VR
Sbjct: 437 QRPLSLIQGPPGTGKTVTSATIIYHLAKLNGGQVLVCAPSNVAVDQLCERIHRTGLKTVR 496
Query: 309 VGNPAR--ISPAVASKSLGEIVKSKLASF-VAEFERKKSDL----RKDLRQCLKDDSLAA 361
V +R + V SL E V+ ++ + + + KS+L +D ++ LK + AA
Sbjct: 497 VTAKSREDVESPVGFLSLHEQVRLNDSNIELIKLNQLKSELGELSSQDEKR-LKQLTRAA 555
Query: 362 GIRXXXXXXXXXXXXXXXXXXXXXXSSAQVVLAT-NTGAADPLIRRLDTFDLVGKRCILA 420
+ VL +T +A+P + L K+ +L
Sbjct: 556 EREILNNADVICCTCVGAGDPRLAKLKFRTVLIDESTQSAEP--ECMIPLVLGCKQVVLV 613
Query: 421 GDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYG 480
GD QL PVI+++KA + G+ SL ER L G +L QYRM+ ++ + S Y
Sbjct: 614 GDHQQLGPVIMNKKAAKAGLNQSLFERLVIL--GCSPIRLNVQYRMHPCLSEFPSNMFYE 671
Query: 481 GSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYN 540
GSL + T L + F P W P+L D+ + + S +LG EE + +GT S+ N
Sbjct: 672 GSLQNGITSFDRLRREVDF--P-W----PIL--DSPMMFWS-NLGNEE-ISASGT-SYLN 719
Query: 541 EGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL-----PEAAGVEVATI 595
EA V V AGV P I + +PY Q ++ + +EVA++
Sbjct: 720 RTEAANVEKIVTRFFKAGVQPKDIGIITPYEGQRSYIVSSMQATGTFKKEHYKEIEVASV 779
Query: 596 DSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLA 655
D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA + ++ + + +
Sbjct: 780 DAFQGREKDFIILSCVRSNDHQGIGFLSDPRRLNVALTRAKYGLVILGNPKVLSKHPLWN 839
Query: 656 RLLRHIR 662
LL+H +
Sbjct: 840 CLLQHFK 846
>POMBASE|SPAC16C9.06c [details] [associations]
symbol:upf1 "ATP-dependent RNA helicase Upf1"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0002184 "cytoplasmic translational
termination" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006415
"translational termination" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR018999
Pfam:PF09416 SMART:SM00382 PomBase:SPAC16C9.06c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0000184 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 GO:GO:0004004 GO:GO:0002184 HOGENOM:HOG000205990
KO:K14326 OMA:MFYEGSL OrthoDB:EOG405W86 PIR:S62476
RefSeq:NP_593080.1 ProteinModelPortal:Q09820 SMR:Q09820
STRING:Q09820 PRIDE:Q09820 EnsemblFungi:SPAC16C9.06c.1
GeneID:2542327 KEGG:spo:SPAC16C9.06c NextBio:20803388
Uniprot:Q09820
Length = 925
Score = 402 (146.6 bits), Expect = 2.6e-34, P = 2.6e-34
Identities = 143/473 (30%), Positives = 221/473 (46%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR-AVQQGER------VLVTAPTNA 290
SQ +A+ L+K PL +IQGPPGTGKT ++ A Q + VLV AP+N
Sbjct: 396 SQSEAVRAVLSK--PLSLIQGPPGTGKTVTSASVVYHLATMQSRKRKSHSPVLVCAPSNV 453
Query: 291 AVDNMVEKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRK 348
AVD + EK+ GL +VRV +R I +V+ SL E +K+ F E +R LR
Sbjct: 454 AVDQLAEKIHRTGLRVVRVAAKSREDIESSVSFLSLHEQIKNY--KFNPELQRLLK-LRS 510
Query: 349 DLRQC-LKDDS----LAAGIRXXXXXXXXXXXXXXXXXXXXXXSSAQ---VVLATNTGAA 400
+ + ++D+ L A S + V++ T A+
Sbjct: 511 ENNELSIQDEKKLRILVAAAEKELLRAAHVICCTCVGAGDRRISKYKFRSVLIDEATQAS 570
Query: 401 DPLIRRLDTFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
+P + L K+ +L GD QL PV++++K + SL ER L G +L
Sbjct: 571 EP--ECMIPLVLGAKQVVLVGDHQQLGPVVMNKKVALASLSQSLFERLIIL--GNSPFRL 626
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPLLLLDTRLP 518
QYRM+ ++ + S Y G+L + T + + VD P+++P PL+
Sbjct: 627 VVQYRMHPCLSEFPSNTFYEGTLQNGVTTSERIARHVDFPWIQP----DSPLMF------ 676
Query: 519 YGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ----V 574
Y + +E L +GT SF N EA V + + + V P I + +PY Q V
Sbjct: 677 YANFG---QEELSASGT-SFLNRTEASTCEKIVTTFLRSNVLPEQIGIVTPYDGQRSYIV 732
Query: 575 QHLRER---LDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVA 631
Q+++ DL +A VEVA++D+FQGRE D +I+S VRS+ +GF+ D RR+NVA
Sbjct: 733 QYMQNNGSMQKDLYKA--VEVASVDAFQGREKDFIILSCVRSSEHQGIGFVNDPRRLNVA 790
Query: 632 ITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGGSGLGMDP 684
+TRA V V+ + + + + H + G + S L + P
Sbjct: 791 LTRAKYGVIVLGNPKVLAKHALWYHFVLHCKEKGYLVEGTLNSLQKFSLTLTP 843
>FB|FBgn0030354 [details] [associations]
symbol:Upf1 "Upf1" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS;IMP;NAS] [GO:0005737 "cytoplasm"
evidence=IEA;NAS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0035195 "gene silencing by miRNA" evidence=IMP] [GO:0071456
"cellular response to hypoxia" evidence=IMP] [GO:0035145 "exon-exon
junction complex" evidence=IDA] InterPro:IPR018999 Pfam:PF09416
GO:GO:0005524 GO:GO:0005737 GO:GO:0000184 GO:GO:0046872
GO:GO:0003677 EMBL:AE014298 GO:GO:0008270 GO:GO:0071456
GO:GO:0004386 eggNOG:COG1112 GeneTree:ENSGT00550000074391 KO:K14326
OMA:MFYEGSL EMBL:AY061379 RefSeq:NP_572767.1 UniGene:Dm.3617
ProteinModelPortal:Q9VYS3 SMR:Q9VYS3 STRING:Q9VYS3 PaxDb:Q9VYS3
PRIDE:Q9VYS3 EnsemblMetazoa:FBtr0073596 GeneID:32153
KEGG:dme:Dmel_CG1559 UCSC:CG1559-RA CTD:5976 FlyBase:FBgn0030354
InParanoid:Q9VYS3 OrthoDB:EOG476HF1 PhylomeDB:Q9VYS3
GenomeRNAi:32153 NextBio:777131 Bgee:Q9VYS3 GermOnline:CG1559
Uniprot:Q9VYS3
Length = 1180
Score = 403 (146.9 bits), Expect = 3.3e-34, P = 3.3e-34
Identities = 145/448 (32%), Positives = 211/448 (47%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMV 296
SQ A+ L +RPL +IQGPPGTGKT I+ + V+ G VLV AP+N AVD +
Sbjct: 455 SQVYAVKHAL--QRPLSLIQGPPGTGKTVTSATIVYQLVKLHGGTVLVCAPSNTAVDQLT 512
Query: 297 EKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKD 356
EK+ L +VRV +R A+ S + L + + E S+L+K L+Q LKD
Sbjct: 513 EKIHRTNLKVVRVCAKSR--EAIDSP----VSFLALHNQIRNMETN-SELKK-LQQ-LKD 563
Query: 357 DSLAAGIRXXXXXXXXXXXXXXXXXXXXXXSSAQVVLATNTGAADPLIRRLD-TFDLV-- 413
++ G +A V+ T GA D + R+ T L+
Sbjct: 564 ET---G--ELSSADEKRYRNLKRAAENQLLEAADVICCTCVGAGDGRLSRVKFTSILIDE 618
Query: 414 ----------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLA 457
K+ IL GD CQL PV++ +KA G+ SL ER L G+
Sbjct: 619 SMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--GIRP 676
Query: 458 TKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL-VDTPFVKPTWITQCPLLLLDTR 516
+L QYRM+ ++ + S Y GSL + L +D P+ +P + P+ L T+
Sbjct: 677 FRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDFPWPQP----ERPMFFLVTQ 732
Query: 517 LPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQ 575
G EE +AG+G SF N EA V + AG+ P I + +PY Q
Sbjct: 733 --------GQEE---IAGSGTSFLNRTEAANVEKITTRFLKAGIKPEQIGIITPYEGQRA 781
Query: 576 HLRERLD---DLPEAA--GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNV 630
+L + + L +E+A++D+FQGRE D +I+S VRSN +GFL D RR+NV
Sbjct: 782 YLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDPRRLNV 841
Query: 631 AITRACKHVAVVCDSSTICHNTFLARLL 658
A+TRA + +V + + LL
Sbjct: 842 ALTRAKFGIIIVGNPKVLAKQQLWNHLL 869
>ZFIN|ZDB-GENE-040426-2836 [details] [associations]
symbol:upf1 "upf1 regulator of nonsense
transcripts homolog (yeast)" species:7955 "Danio rerio" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA;IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009790 "embryo
development" evidence=IMP] InterPro:IPR018999 Pfam:PF09416
ZFIN:ZDB-GENE-040426-2836 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0003677 GO:GO:0008270 GO:GO:0009790 GO:GO:0004386
HOGENOM:HOG000205990 KO:K14326 CTD:5976 HOVERGEN:HBG061556
EMBL:BC045353 EMBL:FM986817 IPI:IPI00491565 RefSeq:NP_998639.1
UniGene:Dr.96025 SMR:Q7ZVZ4 STRING:Q7ZVZ4 GeneID:406783
KEGG:dre:406783 NextBio:20818296 Uniprot:Q7ZVZ4
Length = 1100
Score = 409 (149.0 bits), Expect = 6.5e-34, Sum P(2) = 6.5e-34
Identities = 139/440 (31%), Positives = 203/440 (46%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGER-VLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 464 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 523
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDSLAAGIRXX 366
+ +KS E + S ++ + + D +L+ Q LKD++ G
Sbjct: 524 L----------CAKSR-EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDET---G--EL 567
Query: 367 XXXXXXXXXXXXXXXXXXXXSSAQVVLATNTGAADPLIRRLD----TFD----------- 411
+A V+ T GA DP + ++ D
Sbjct: 568 SSSDEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECM 627
Query: 412 ----LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
L K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYRM+
Sbjct: 628 VPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYRMH 685
Query: 468 DAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE 527
A++++ S Y GSL + T A L F P P+ T+ G E
Sbjct: 686 PALSAFPSNIFYEGSLQNGVTAADRLKKGFDFQWPQ--PDKPMFFYVTQ--------GQE 735
Query: 528 EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD---DL 584
E + +GT S+ N EA V L+ AG P I + +PY Q +L + + L
Sbjct: 736 E-IASSGT-SYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSL 793
Query: 585 PEAA--GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVV 642
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V +V
Sbjct: 794 HTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIV 853
Query: 643 CDSSTICHNTFLARLLRHIR 662
+ + LL + +
Sbjct: 854 GNPKALSKQPLWNHLLNYYK 873
Score = 37 (18.1 bits), Expect = 6.5e-34, Sum P(2) = 6.5e-34
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 225 VKLDGIMGKTFDDSQKKA-IA----LGLNKKR 251
VKL+ K +SQ + I LGLNKKR
Sbjct: 289 VKLEADYDKKLKESQTQDNITVRWDLGLNKKR 320
>UNIPROTKB|E1C0J4 [details] [associations]
symbol:UPF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR018999 Pfam:PF09416 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0003677 GO:GO:0008270 GO:GO:0004386
GeneTree:ENSGT00550000074391 EMBL:AADN02071779 IPI:IPI00598917
Ensembl:ENSGALT00000005099 NextBio:20823079 ArrayExpress:E1C0J4
Uniprot:E1C0J4
Length = 1117
Score = 407 (148.3 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 138/440 (31%), Positives = 203/440 (46%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGER-VLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 483 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 542
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDSLAAGIRXX 366
+ +KS E + S ++ + + D +L+ Q LKD++ G
Sbjct: 543 L----------CAKSR-EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDET---G--EL 586
Query: 367 XXXXXXXXXXXXXXXXXXXXSSAQVVLATNTGAADPLIRRLD----TFD----------- 411
+A V+ T GA DP + ++ D
Sbjct: 587 SSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECM 646
Query: 412 ----LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
L K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYRM+
Sbjct: 647 VPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYRMH 704
Query: 468 DAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE 527
A++++ S Y GSL + T A + F P P+ T+ G E
Sbjct: 705 PALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------GQE 754
Query: 528 EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD---DL 584
E + +GT S+ N EA V L+ AG P I + +PY Q +L + + L
Sbjct: 755 E-IASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSL 812
Query: 585 PEAA--GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVV 642
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V +V
Sbjct: 813 HTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIV 872
Query: 643 CDSSTICHNTFLARLLRHIR 662
+ + LL + +
Sbjct: 873 GNPKALSKQPLWNHLLNYYK 892
Score = 37 (18.1 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 225 VKLDGIMGKTFDDSQKKA-IA----LGLNKKR 251
VKL+ K +SQ + I LGLNKKR
Sbjct: 309 VKLEADYDKKLKESQTQDNITVRWDLGLNKKR 340
>UNIPROTKB|E1BEK9 [details] [associations]
symbol:UPF1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071044 "histone mRNA catabolic process" evidence=IEA]
[GO:0044530 "supraspliceosomal complex" evidence=IEA] [GO:0035145
"exon-exon junction complex" evidence=IEA] [GO:0009048 "dosage
compensation by inactivation of X chromosome" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000785
"chromatin" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] InterPro:IPR018999
Pfam:PF09416 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006281
GO:GO:0000785 GO:GO:0003682 GO:GO:0007049 GO:GO:0071044
GO:GO:0009048 GO:GO:0004004 GO:GO:0035145
GeneTree:ENSGT00550000074391 OMA:MFYEGSL EMBL:DAAA02019036
IPI:IPI00685259 Ensembl:ENSBTAT00000027868 Uniprot:E1BEK9
Length = 1127
Score = 407 (148.3 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 138/440 (31%), Positives = 203/440 (46%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGER-VLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 493 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 552
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDSLAAGIRXX 366
+ +KS E + S ++ + + D +L+ Q LKD++ G
Sbjct: 553 L----------CAKSR-EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDET---G--EL 596
Query: 367 XXXXXXXXXXXXXXXXXXXXSSAQVVLATNTGAADPLIRRLD----TFD----------- 411
+A V+ T GA DP + ++ D
Sbjct: 597 SSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECM 656
Query: 412 ----LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
L K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYRM+
Sbjct: 657 VPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYRMH 714
Query: 468 DAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE 527
A++++ S Y GSL + T A + F P P+ T+ G E
Sbjct: 715 PALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------GQE 764
Query: 528 EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD---DL 584
E + +GT S+ N EA V L+ AG P I + +PY Q +L + + L
Sbjct: 765 E-IASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSL 822
Query: 585 PEAA--GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVV 642
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V +V
Sbjct: 823 HTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIV 882
Query: 643 CDSSTICHNTFLARLLRHIR 662
+ + LL + +
Sbjct: 883 GNPKALSKQPLWNHLLNYYK 902
Score = 37 (18.1 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 225 VKLDGIMGKTFDDSQKKA-IA----LGLNKKR 251
VKL+ K +SQ + I LGLNKKR
Sbjct: 308 VKLEADYDKKLKESQTQDNITVRWDLGLNKKR 339
>UNIPROTKB|E1C0J3 [details] [associations]
symbol:UPF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0000785 "chromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0009048 "dosage compensation by
inactivation of X chromosome" evidence=IEA] [GO:0035145 "exon-exon
junction complex" evidence=IEA] [GO:0044530 "supraspliceosomal
complex" evidence=IEA] [GO:0071044 "histone mRNA catabolic process"
evidence=IEA] InterPro:IPR018999 Pfam:PF09416 GO:GO:0005524
GO:GO:0005737 GO:GO:0000184 GO:GO:0003677 GO:GO:0006260
GO:GO:0008270 GO:GO:0006281 GO:GO:0000785 GO:GO:0003682
GO:GO:0007049 GO:GO:0071044 GO:GO:0009048 GO:GO:0004004
GO:GO:0035145 GeneTree:ENSGT00550000074391 OMA:MFYEGSL
EMBL:AADN02071779 IPI:IPI00571950 Ensembl:ENSGALT00000005101
ArrayExpress:E1C0J3 Uniprot:E1C0J3
Length = 1128
Score = 407 (148.3 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 138/440 (31%), Positives = 203/440 (46%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGER-VLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 494 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 553
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDSLAAGIRXX 366
+ +KS E + S ++ + + D +L+ Q LKD++ G
Sbjct: 554 L----------CAKSR-EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDET---G--EL 597
Query: 367 XXXXXXXXXXXXXXXXXXXXSSAQVVLATNTGAADPLIRRLD----TFD----------- 411
+A V+ T GA DP + ++ D
Sbjct: 598 SSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECM 657
Query: 412 ----LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
L K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYRM+
Sbjct: 658 VPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYRMH 715
Query: 468 DAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE 527
A++++ S Y GSL + T A + F P P+ T+ G E
Sbjct: 716 PALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------GQE 765
Query: 528 EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD---DL 584
E + +GT S+ N EA V L+ AG P I + +PY Q +L + + L
Sbjct: 766 E-IASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSL 823
Query: 585 PEAA--GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVV 642
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V +V
Sbjct: 824 HTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIV 883
Query: 643 CDSSTICHNTFLARLLRHIR 662
+ + LL + +
Sbjct: 884 GNPKALSKQPLWNHLLNYYK 903
Score = 37 (18.1 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 225 VKLDGIMGKTFDDSQKKA-IA----LGLNKKR 251
VKL+ K +SQ + I LGLNKKR
Sbjct: 309 VKLEADYDKKLKESQTQDNITVRWDLGLNKKR 340
>UNIPROTKB|Q92900 [details] [associations]
symbol:UPF1 "Regulator of nonsense transcripts 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0009048 "dosage compensation by
inactivation of X chromosome" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000184 "nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay"
evidence=IDA;NAS;IMP;TAS] [GO:0006449 "regulation of translational
termination" evidence=IMP;NAS] [GO:0004386 "helicase activity"
evidence=NAS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005737
"cytoplasm" evidence=NAS] [GO:0071044 "histone mRNA catabolic
process" evidence=IMP] [GO:0035145 "exon-exon junction complex"
evidence=IDA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0000785 "chromatin"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0006260 "DNA replication" evidence=IMP] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0007049 "cell cycle" evidence=IMP] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR018999 Pfam:PF09416 GO:GO:0005829
GO:GO:0005524 GO:GO:0010467 GO:GO:0000184 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006281
GO:GO:0000785 GO:GO:0003682 GO:GO:0003723 GO:GO:0007049
GO:GO:0006406 GO:GO:0000932 eggNOG:COG1112 GO:GO:0071044
GO:GO:0009048 GO:GO:0004004 GO:GO:0035145 EMBL:AC003972
GO:GO:0044530 GO:GO:0006449 HOGENOM:HOG000205990 KO:K14326
OMA:MFYEGSL CTD:5976 EMBL:U65533 EMBL:U59323 EMBL:D86988
EMBL:AF074016 EMBL:BC039817 IPI:IPI00034049 IPI:IPI00399170
RefSeq:NP_002902.2 UniGene:Hs.515266 PDB:2GJK PDB:2GK6 PDB:2GK7
PDB:2IYK PDB:2WJV PDB:2WJY PDB:2XZO PDB:2XZP PDBsum:2GJK
PDBsum:2GK6 PDBsum:2GK7 PDBsum:2IYK PDBsum:2WJV PDBsum:2WJY
PDBsum:2XZO PDBsum:2XZP ProteinModelPortal:Q92900 SMR:Q92900
DIP:DIP-29875N IntAct:Q92900 MINT:MINT-5005507 STRING:Q92900
PhosphoSite:Q92900 DMDM:17380291 PaxDb:Q92900 PRIDE:Q92900
Ensembl:ENST00000262803 GeneID:5976 KEGG:hsa:5976 UCSC:uc002nkf.3
UCSC:uc002nkg.3 GeneCards:GC19P018942 HGNC:HGNC:9962 HPA:HPA019587
HPA:HPA020857 MIM:601430 neXtProt:NX_Q92900 PharmGKB:PA34328
HOVERGEN:HBG061556 InParanoid:Q92900 ChiTaRS:UPF1
EvolutionaryTrace:Q92900 GenomeRNAi:5976 NextBio:23259
ArrayExpress:Q92900 Bgee:Q92900 CleanEx:HS_UPF1
Genevestigator:Q92900 GermOnline:ENSG00000005007 Uniprot:Q92900
Length = 1129
Score = 407 (148.3 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 138/440 (31%), Positives = 203/440 (46%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGER-VLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 495 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 554
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDSLAAGIRXX 366
+ +KS E + S ++ + + D +L+ Q LKD++ G
Sbjct: 555 L----------CAKSR-EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDET---G--EL 598
Query: 367 XXXXXXXXXXXXXXXXXXXXSSAQVVLATNTGAADPLIRRLD----TFD----------- 411
+A V+ T GA DP + ++ D
Sbjct: 599 SSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECM 658
Query: 412 ----LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
L K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYRM+
Sbjct: 659 VPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYRMH 716
Query: 468 DAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE 527
A++++ S Y GSL + T A + F P P+ T+ G E
Sbjct: 717 PALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------GQE 766
Query: 528 EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD---DL 584
E + +GT S+ N EA V L+ AG P I + +PY Q +L + + L
Sbjct: 767 E-IASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSL 824
Query: 585 PEAA--GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVV 642
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V +V
Sbjct: 825 HTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIV 884
Query: 643 CDSSTICHNTFLARLLRHIR 662
+ + LL + +
Sbjct: 885 GNPKALSKQPLWNHLLNYYK 904
Score = 37 (18.1 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 225 VKLDGIMGKTFDDSQKKA-IA----LGLNKKR 251
VKL+ K +SQ + I LGLNKKR
Sbjct: 310 VKLEADYDKKLKESQTQDNITVRWDLGLNKKR 341
>UNIPROTKB|E2RL81 [details] [associations]
symbol:UPF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] InterPro:IPR018999 Pfam:PF09416 GO:GO:0005524
GO:GO:0005737 GO:GO:0000184 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 GeneTree:ENSGT00550000074391 OMA:MFYEGSL
EMBL:AAEX03012279 Ensembl:ENSCAFT00000023180 Uniprot:E2RL81
Length = 1130
Score = 407 (148.3 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 138/440 (31%), Positives = 203/440 (46%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGER-VLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 496 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 555
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDSLAAGIRXX 366
+ +KS E + S ++ + + D +L+ Q LKD++ G
Sbjct: 556 L----------CAKSR-EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDET---G--EL 599
Query: 367 XXXXXXXXXXXXXXXXXXXXSSAQVVLATNTGAADPLIRRLD----TFD----------- 411
+A V+ T GA DP + ++ D
Sbjct: 600 SSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECM 659
Query: 412 ----LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
L K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYRM+
Sbjct: 660 VPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYRMH 717
Query: 468 DAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE 527
A++++ S Y GSL + T A + F P P+ T+ G E
Sbjct: 718 PALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------GQE 767
Query: 528 EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD---DL 584
E + +GT S+ N EA V L+ AG P I + +PY Q +L + + L
Sbjct: 768 E-IASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSL 825
Query: 585 PEAA--GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVV 642
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V +V
Sbjct: 826 HTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIV 885
Query: 643 CDSSTICHNTFLARLLRHIR 662
+ + LL + +
Sbjct: 886 GNPKALSKQPLWNHLLNYYK 905
Score = 37 (18.1 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 225 VKLDGIMGKTFDDSQKKA-IA----LGLNKKR 251
VKL+ K +SQ + I LGLNKKR
Sbjct: 311 VKLEADYDKKLKESQTQDNITVRWDLGLNKKR 342
>MGI|MGI:107995 [details] [associations]
symbol:Upf1 "UPF1 regulator of nonsense transcripts homolog
(yeast)" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=ISO]
[GO:0000785 "chromatin" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006260 "DNA replication" evidence=ISO]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0006449 "regulation of
translational termination" evidence=ISO] [GO:0007049 "cell cycle"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009048 "dosage compensation by inactivation of X chromosome"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=ISO] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0071044 "histone mRNA catabolic process"
evidence=ISO] InterPro:IPR018999 Pfam:PF09416 MGI:MGI:107995
GO:GO:0005524 GO:GO:0000184 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0008270 GO:GO:0006281 GO:GO:0000785
GO:GO:0003682 GO:GO:0003723 GO:GO:0007049 GO:GO:0000932
eggNOG:COG1112 GO:GO:0071044 GO:GO:0009048 GO:GO:0004004
GO:GO:0035145 GO:GO:0006449 GeneTree:ENSGT00550000074391
HOGENOM:HOG000205990 KO:K14326 OMA:MFYEGSL CTD:5976
HOVERGEN:HBG061556 ChiTaRS:UPF1 EMBL:AF322655 EMBL:AY597039
EMBL:AY597038 EMBL:AK148196 EMBL:BC030916 EMBL:BC052149
EMBL:BC056442 EMBL:AF182947 IPI:IPI00420949 IPI:IPI00850525
RefSeq:NP_001116301.1 RefSeq:NP_109605.2 UniGene:Mm.390048
ProteinModelPortal:Q9EPU0 SMR:Q9EPU0 STRING:Q9EPU0
PhosphoSite:Q9EPU0 PaxDb:Q9EPU0 PRIDE:Q9EPU0
Ensembl:ENSMUST00000075666 GeneID:19704 KEGG:mmu:19704
UCSC:uc009mab.2 UCSC:uc012gfa.1 InParanoid:Q9EPU0 OrthoDB:EOG4P8FH8
NextBio:297078 Bgee:Q9EPU0 Genevestigator:Q9EPU0
GermOnline:ENSMUSG00000058301 Uniprot:Q9EPU0
Length = 1124
Score = 406 (148.0 bits), Expect = 1.6e-33, Sum P(2) = 1.6e-33
Identities = 138/440 (31%), Positives = 203/440 (46%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGER-VLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 490 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 549
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDSLAAGIRXX 366
+ +KS E + S ++ + + D +L+ Q LKD++ G
Sbjct: 550 L----------CAKSR-EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDET---G--EL 593
Query: 367 XXXXXXXXXXXXXXXXXXXXSSAQVVLATNTGAADPLIRRLD----TFD----------- 411
+A V+ T GA DP + ++ D
Sbjct: 594 SSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECM 653
Query: 412 ----LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
L K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYRM+
Sbjct: 654 VPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYRMH 711
Query: 468 DAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE 527
A++++ S Y GSL + T A + F P P+ T+ G E
Sbjct: 712 PALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------GQE 761
Query: 528 EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD---DL 584
E + +GT S+ N EA V L+ AG P I + +PY Q +L + + L
Sbjct: 762 E-IASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSL 819
Query: 585 PEAA--GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVV 642
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V +V
Sbjct: 820 HTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIV 879
Query: 643 CDSSTICHNTFLARLLRHIR 662
+ + LL + +
Sbjct: 880 GNPKALSKQPLWNHLLSYYK 899
Score = 37 (18.1 bits), Expect = 1.6e-33, Sum P(2) = 1.6e-33
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 225 VKLDGIMGKTFDDSQKKA-IA----LGLNKKR 251
VKL+ K +SQ + I LGLNKKR
Sbjct: 305 VKLEADYDKKLKESQTQDNITVRWDLGLNKKR 336
>DICTYBASE|DDB_G0288923 [details] [associations]
symbol:upf1 "regulator of nonsense transcripts 1"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;IC] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR018999 Pfam:PF09416 dictyBase:DDB_G0288923
GO:GO:0005524 GO:GO:0005737 GO:GO:0000184 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AAFI02000126
GenomeReviews:CM000154_GR GO:GO:0003676 eggNOG:COG1112
GO:GO:0004004 KO:K14326 RefSeq:XP_636490.1
ProteinModelPortal:Q54I89 SMR:Q54I89 STRING:Q54I89
EnsemblProtists:DDB0233746 GeneID:8626873 KEGG:ddi:DDB_G0288923
InParanoid:Q54I89 Uniprot:Q54I89
Length = 1331
Score = 296 (109.3 bits), Expect = 7.0e-32, Sum P(2) = 7.0e-32
Identities = 88/277 (31%), Positives = 138/277 (49%)
Query: 391 VVLATNTGAADPLIRRLDTFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAAT 450
+++ +T A++P L + K+ IL GD QL PV+L +K ++ G+ SL ER +
Sbjct: 703 ILIDESTQASEP--ECLIPLMMGAKQVILVGDHRQLGPVLLCKKVVDAGLSQSLFERLIS 760
Query: 451 LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPL 510
L G +LT QYRM+ ++ + S Y G L+S SH D+ P + P+
Sbjct: 761 L--GHHPERLTIQYRMHPSLTEFPSNTSYEGQLVSE---LSHTDRDSQSKFPWPQPKDPM 815
Query: 511 LLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
+ G EE + +GT SF N EA I V + G P I + +PY
Sbjct: 816 FFFNCT--------GSEE-ISSSGT-SFINTTEASICEKIVTKFLELGSLPGQIGIITPY 865
Query: 571 VAQVQHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Q ++ + +L +EVA++DSFQGRE D +I+S VRSN +GFL D
Sbjct: 866 EGQRAYITSHMQKSGKLNLELYKSIEVASVDSFQGREKDYIILSCVRSNDYQGIGFLQDP 925
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
RR+NVA+TRA + ++ ++ + + L+ H +
Sbjct: 926 RRLNVALTRARFGLIILGNAKVLSKDPLWNSLISHFK 962
Score = 142 (55.0 bits), Expect = 7.0e-32, Sum P(2) = 7.0e-32
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEII---ARAVQQGERVLVTAPTNAAV 292
++SQ A+ L PL +IQGPPGTGKT + II + V+ ++VLV P+N A+
Sbjct: 538 NESQISAVNKVLTA--PLSLIQGPPGTGKTVISSFIIHHLVKYVKGNDKVLVCTPSNVAI 595
Query: 293 DNMVEKLSDVGLNIVRVGNPAR 314
D + KL ++GL +VR+ + R
Sbjct: 596 DQLTGKLHEIGLKVVRLSSKLR 617
>TAIR|locus:2130384 [details] [associations]
symbol:MAA3 "MAGATAMA 3" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0009553 "embryo sac development"
evidence=IMP] [GO:0009875 "pollen-pistil interaction" evidence=IMP]
[GO:0010183 "pollen tube guidance" evidence=IMP] PROSITE:PS51198
GO:GO:0005524 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0004386 GO:GO:0009553 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 EMBL:Z97339 GO:GO:0010183 EMBL:AL161542 EMBL:EU915246
IPI:IPI00522212 PIR:E71420 RefSeq:NP_193292.3 UniGene:At.33168
ProteinModelPortal:B6SFA4 SMR:B6SFA4 PaxDb:B6SFA4 PRIDE:B6SFA4
EnsemblPlants:AT4G15570.1 GeneID:827233 KEGG:ath:AT4G15570
GeneFarm:2417 TAIR:At4g15570 HOGENOM:HOG000030627 KO:K10706
OMA:TIMREFT PhylomeDB:B6SFA4 ProtClustDB:CLSN2680970
Genevestigator:B6SFA4 GO:GO:0009875 InterPro:IPR026852
PANTHER:PTHR10887:SF27 Uniprot:B6SFA4
Length = 818
Score = 323 (118.8 bits), Expect = 6.9e-31, Sum P(2) = 6.9e-31
Identities = 129/445 (28%), Positives = 189/445 (42%)
Query: 245 LGLNKKRPLLIIQGPPG---TGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSD 301
LG+N + ++ G G T L E++ + + RVLV AP+N+A+D +V +L
Sbjct: 337 LGVNPRDAIMPEDGDDGFFPTSGNELKPEVVNASRKYRLRVLVCAPSNSALDEIVLRLLS 396
Query: 302 VGLNIVRVGNPARISPAVAS---KSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDS 358
GL R N +P + K+ + L VA+ D K DS
Sbjct: 397 SGL---RDENAQTYTPKIVRIGLKAHHSVASVSLDHLVAQKRGSAIDKPKQGTTGTDIDS 453
Query: 359 LAAGIRXXXXXXXXXXXXXXXXXXXXXXSSAQVVLATNTG-AADPLIRRLDTFDLVGKRC 417
+ I VV+ A +P L K+
Sbjct: 454 IRTAILEEAAIVFATLSFSGSALLAKSNRGFDVVIIDEAAQAVEPAT--LIPLATRCKQV 511
Query: 418 ILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKE 477
L GD QL ++S A + G G S+ ER G L TQYRM+ I S+ SK+
Sbjct: 512 FLVGDPKQLPATVISTVAQDSGYGTSMFERLQKA--GYPVKMLKTQYRMHPEIRSFPSKQ 569
Query: 478 MYGGSLISSSTVASHLLVDTPFVKPTWIT-QC--PLLLLDTRLPYGSLSLGCEEHLDLAG 534
Y G+L S + + D W +C P D + G S +H
Sbjct: 570 FYEGALEDGSDIEAQTTRD-------WHKYRCFGPFCFFD--IHEGKES----QHP--GA 614
Query: 535 TGSFYNEGEAEIVV---HHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL--PEAAG 589
TGS N E E V+ H + ++ S S +A+ SPY QV+ ++R ++ EA
Sbjct: 615 TGSRVNLDEVEFVLLIYHRLVTMYPELKSSSQLAIISPYNYQVKTFKDRFKEMFGTEAEK 674
Query: 590 V-EVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
V ++ T+D FQGRE D I S VR+N G +GFL +SRRMNV ITRA V VV ++T+
Sbjct: 675 VVDINTVDGFQGREKDVAIFSCVRANENGQIGFLSNSRRMNVGITRAKSSVLVVGSAATL 734
Query: 649 CHNTFLARLLRHIRYFGRV-KHAEP 672
+ L+ R+ K ++P
Sbjct: 735 KSDPLWKNLIESAEQRNRLFKVSKP 759
Score = 97 (39.2 bits), Expect = 6.9e-31, Sum P(2) = 6.9e-31
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 226 KLDGIMGKTFDD----SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEII 272
K+ G + + F++ SQK+AI +GL++K ++IQGPPGTGKT + I+
Sbjct: 245 KISGPLNEFFNENLNKSQKEAIDVGLSRKS-FVLIQGPPGTGKTQTILSIL 294
>UNIPROTKB|Q8QHA5 [details] [associations]
symbol:dna2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:8355 "Xenopus laevis" [GO:0000076
"DNA replication checkpoint" evidence=ISS] [GO:0000729 "DNA
double-strand break processing" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003678 "DNA helicase activity"
evidence=ISS] [GO:0004518 "nuclease activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006264
"mitochondrial DNA replication" evidence=ISS] [GO:0006284
"base-excision repair" evidence=ISS] [GO:0016890 "site-specific
endodeoxyribonuclease activity, specific for altered base"
evidence=ISS] [GO:0017108 "5'-flap endonuclease activity"
evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
[GO:0033567 "DNA replication, Okazaki fragment processing"
evidence=ISS] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=ISS] [GO:0043139 "5'-3' DNA helicase activity"
evidence=ISS] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=ISS] [GO:0045740 "positive regulation of DNA
replication" evidence=ISS] [GO:0005760 "gamma DNA polymerase
complex" evidence=ISS] InterPro:IPR026851 InterPro:IPR014808
Pfam:PF08696 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0006284 GO:GO:0003677 GO:GO:0051539
GO:GO:0016890 GO:GO:0045740 GO:GO:0000729 GO:GO:0017108
GO:GO:0000076 GO:GO:0043137 GO:GO:0043139 GO:GO:0043142
GO:GO:0006264 PANTHER:PTHR10887:SF14 CTD:1763 HOVERGEN:HBG081456
KO:K10742 EMBL:AF474372 RefSeq:NP_001079231.1 UniGene:Xl.17390
ProteinModelPortal:Q8QHA5 GeneID:378492 KEGG:xla:378492
Xenbase:XB-GENE-5829000 Uniprot:Q8QHA5
Length = 1053
Score = 286 (105.7 bits), Expect = 3.4e-29, Sum P(2) = 3.4e-29
Identities = 83/237 (35%), Positives = 126/237 (53%)
Query: 416 RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWAS 475
R +L GD QL P++ S +A E G+ SL +R E V+ +LT QYRMN I + ++
Sbjct: 782 RFVLVGDHQQLPPLVKSAEARELGMSESLFKRLERNQEAVV--QLTVQYRMNSKIMALSN 839
Query: 476 KEMYGGSLISSSTVASHLLVDTPFVKPTWI------TQCPLLLLDTRLPYGSLS-LGCEE 528
K +Y G L +S S+ +V P +K + +Q + + D P + L E+
Sbjct: 840 KLVYEGRLECASDRVSNAVVQLPHIKTLLLELEFRESQESMWIKDVLEPSNPVCFLNTEK 899
Query: 529 --HLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPE 586
L+ G N EA++V H + AG PS I + +PY Q++ + + L
Sbjct: 900 IPALETEEKGGISNWIEAKLVFHLTKLYLKAGCRPSDIGIIAPYRQQLKMISNYFNSL-S 958
Query: 587 AAGVEVATIDSFQGREADAVIISMVRSNTLGAVG-FLGDSRRMNVAITRACKHVAVV 642
A+ VEV T+D +QGR+ +I+S VRSN G +G L D RR+NVA+TRA KH ++
Sbjct: 959 ASAVEVNTVDKYQGRDKSVIIVSFVRSNIDGKLGDLLKDWRRLNVALTRA-KHKLIM 1014
Score = 124 (48.7 bits), Expect = 3.4e-29, Sum P(2) = 3.4e-29
Identities = 35/102 (34%), Positives = 55/102 (53%)
Query: 239 QKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEK 298
QK+A+ L K LI+ G PGTGKT + ++ G VL+T+ T++AVDN++ K
Sbjct: 631 QKQAMKRVLLSKDYTLIV-GMPGTGKTTTICTLVRILYACGFSVLLTSYTHSAVDNILLK 689
Query: 299 LSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFE 340
L + +R+G ++ P V S EI K+K ++ E
Sbjct: 690 LKKFQVGFLRLGRTQKLHPDVQEFSEEEICKAKSIKSLSALE 731
>UNIPROTKB|P51530 [details] [associations]
symbol:DNA2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:9606 "Homo sapiens" [GO:0005524
"ATP binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0042645
"mitochondrial nucleoid" evidence=IDA] [GO:0043504 "mitochondrial
DNA repair" evidence=IDA] [GO:0006264 "mitochondrial DNA
replication" evidence=IDA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IDA] [GO:0045740 "positive regulation of DNA
replication" evidence=IDA] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IDA] [GO:0006284 "base-excision repair"
evidence=IDA] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=IDA] [GO:0005760
"gamma DNA polymerase complex" evidence=IDA] [GO:0016887 "ATPase
activity" evidence=TAS] [GO:0004386 "helicase activity"
evidence=TAS] [GO:0000076 "DNA replication checkpoint"
evidence=IMP] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0033567 "DNA
replication, Okazaki fragment processing" evidence=IDA] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000729 "DNA double-strand
break processing" evidence=IDA] [GO:0004518 "nuclease activity"
evidence=IDA] [GO:0043139 "5'-3' DNA helicase activity"
evidence=IDA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0032201 "telomere
maintenance via semi-conservative replication" evidence=TAS]
[GO:0006200 "ATP catabolic process" evidence=TAS] [GO:0032508 "DNA
duplex unwinding" evidence=IDA] InterPro:IPR026851
InterPro:IPR014808 Pfam:PF08696 GO:GO:0005524 Reactome:REACT_115566
GO:GO:0005654 GO:GO:0046872 GO:GO:0006284 GO:GO:0003677
GO:GO:0051539 GO:GO:0042645 GO:GO:0000084 GO:GO:0016890
eggNOG:COG1112 GO:GO:0045740 GO:GO:0000722 GO:GO:0000729
GO:GO:0017108 Reactome:REACT_383 GO:GO:0000076 GO:GO:0043137
GO:GO:0043139 GO:GO:0043142 GO:GO:0043504 GO:GO:0006264
PANTHER:PTHR10887:SF14 CTD:1763 HOGENOM:HOG000168456
HOVERGEN:HBG081456 KO:K10742 EMBL:D42046 EMBL:AL136233
EMBL:BC041115 EMBL:BC053574 EMBL:BC063664 EMBL:BC111740
EMBL:BC028188 IPI:IPI00216142 IPI:IPI00816670 IPI:IPI00816801
PIR:T50697 RefSeq:NP_001073918.2 UniGene:Hs.532446
ProteinModelPortal:P51530 SMR:P51530 STRING:P51530
PhosphoSite:P51530 DMDM:119370373 PaxDb:P51530 PRIDE:P51530
Ensembl:ENST00000358410 Ensembl:ENST00000399179
Ensembl:ENST00000549829 GeneID:1763 KEGG:hsa:1763 UCSC:uc021prt.1
GeneCards:GC10M070173 HGNC:HGNC:2939 HPA:HPA037487 MIM:601810
neXtProt:NX_P51530 InParanoid:P51530 GenomeRNAi:1763 NextBio:7187
ArrayExpress:P51530 Bgee:P51530 CleanEx:HS_DNA2
Genevestigator:P51530 GermOnline:ENSG00000138346 GO:GO:0032201
Uniprot:P51530
Length = 1060
Score = 274 (101.5 bits), Expect = 3.6e-28, Sum P(2) = 3.6e-28
Identities = 88/261 (33%), Positives = 132/261 (50%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
+R +L GD QL P++L+R+A G+ SL +R V+ +LT QYRMN I S +
Sbjct: 780 RRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKSAVV--QLTVQYRMNSKIMSLS 837
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVKPTWI--------TQCPLLL--LDTRLPYGSLSL 524
+K Y G L S ++ +++ K + + P L+ + P L+
Sbjct: 838 NKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYADYSDNPWLMGVFEPNNPVCFLNT 897
Query: 525 GCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL 584
+ G N EA+++V + AG SPS I + +PY Q++ + D L
Sbjct: 898 DKVPAPEQVEKGGVSNVTEAKLIVFLTSIFVKAGCSPSDIGIIAPYRQQLKIIN---DLL 954
Query: 585 PEAAG-VEVATIDSFQGREADAVIISMVRSNTLGAVG-FLGDSRRMNVAITRACKHVAVV 642
+ G VEV T+D +QGR+ V++S VRSN G VG L D RR+NVAITRA KH ++
Sbjct: 955 ARSIGMVEVNTVDKYQGRDKSIVLVSFVRSNKDGTVGELLKDWRRLNVAITRA-KHKLIL 1013
Query: 643 --CDSSTICHNTFLARLLRHI 661
C S C+ L +LL H+
Sbjct: 1014 LGCVPSLNCYPP-LEKLLNHL 1033
Score = 127 (49.8 bits), Expect = 3.6e-28, Sum P(2) = 3.6e-28
Identities = 35/108 (32%), Positives = 59/108 (54%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAV 292
K + Q++A+ L K LI+ G PGTGKT + ++ G VL+T+ T++AV
Sbjct: 624 KGLNKPQRQAMKKVLLSKDYTLIV-GMPGTGKTTTICTLVRILYACGFSVLLTSYTHSAV 682
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFE 340
DN++ KL+ + +R+G ++ PA+ + EI +SK +A E
Sbjct: 683 DNILLKLAKFKIGFLRLGQIQKVHPAIQQFTEQEICRSKSIKSLALLE 730
>UNIPROTKB|J3KPX5 [details] [associations]
symbol:DNA2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:9606 "Homo sapiens" [GO:0017108
"5'-flap endonuclease activity" evidence=IEA] [GO:0033567 "DNA
replication, Okazaki fragment processing" evidence=IEA] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR026851 InterPro:IPR014808 Pfam:PF08696 GO:GO:0017108
GO:GO:0043142 GO:GO:0033567 PANTHER:PTHR10887:SF14 EMBL:AL136233
HGNC:HGNC:2939 OMA:EHESLCH ProteinModelPortal:J3KPX5
Ensembl:ENST00000399180 Uniprot:J3KPX5
Length = 1146
Score = 274 (101.5 bits), Expect = 4.5e-28, Sum P(2) = 4.5e-28
Identities = 88/261 (33%), Positives = 132/261 (50%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
+R +L GD QL P++L+R+A G+ SL +R V+ +LT QYRMN I S +
Sbjct: 866 RRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKSAVV--QLTVQYRMNSKIMSLS 923
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVKPTWI--------TQCPLLL--LDTRLPYGSLSL 524
+K Y G L S ++ +++ K + + P L+ + P L+
Sbjct: 924 NKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYADYSDNPWLMGVFEPNNPVCFLNT 983
Query: 525 GCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL 584
+ G N EA+++V + AG SPS I + +PY Q++ + D L
Sbjct: 984 DKVPAPEQVEKGGVSNVTEAKLIVFLTSIFVKAGCSPSDIGIIAPYRQQLKIIN---DLL 1040
Query: 585 PEAAG-VEVATIDSFQGREADAVIISMVRSNTLGAVG-FLGDSRRMNVAITRACKHVAVV 642
+ G VEV T+D +QGR+ V++S VRSN G VG L D RR+NVAITRA KH ++
Sbjct: 1041 ARSIGMVEVNTVDKYQGRDKSIVLVSFVRSNKDGTVGELLKDWRRLNVAITRA-KHKLIL 1099
Query: 643 --CDSSTICHNTFLARLLRHI 661
C S C+ L +LL H+
Sbjct: 1100 LGCVPSLNCYPP-LEKLLNHL 1119
Score = 127 (49.8 bits), Expect = 4.5e-28, Sum P(2) = 4.5e-28
Identities = 35/108 (32%), Positives = 59/108 (54%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAV 292
K + Q++A+ L K LI+ G PGTGKT + ++ G VL+T+ T++AV
Sbjct: 710 KGLNKPQRQAMKKVLLSKDYTLIV-GMPGTGKTTTICTLVRILYACGFSVLLTSYTHSAV 768
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFE 340
DN++ KL+ + +R+G ++ PA+ + EI +SK +A E
Sbjct: 769 DNILLKLAKFKIGFLRLGQIQKVHPAIQQFTEQEICRSKSIKSLALLE 816
>WB|WBGene00016566 [details] [associations]
symbol:eri-7 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0019079 "viral
genome replication" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR003593 SMART:SM00382 GO:GO:0000166 GO:GO:0000003
GO:GO:0017111 InterPro:IPR014001 SMART:SM00487 EMBL:FO080509
GeneTree:ENSGT00700000104572 PIR:T28788 RefSeq:NP_491374.2
ProteinModelPortal:O01976 SMR:O01976 EnsemblMetazoa:C41D11.7
GeneID:172047 KEGG:cel:CELE_C41D11.7 UCSC:C41D11.7.1 CTD:172047
WormBase:C41D11.7 InParanoid:O01976 OMA:NDEEMIN NextBio:873807
ArrayExpress:O01976 Uniprot:O01976
Length = 625
Score = 203 (76.5 bits), Expect = 3.7e-27, Sum P(2) = 3.7e-27
Identities = 97/367 (26%), Positives = 161/367 (43%)
Query: 177 ERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLE--ENDLADWSEVK-LDGI--- 230
E + + L L++KN K+N + TL + E +T + E+ + D E+ D +
Sbjct: 3 EADKKFLELVKKN--QKQNTNPVYQYTLEDNPESLTLQDVLESHMTDPIELNSFDSMEKE 60
Query: 231 MGKTF-DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTN 289
G F ++ Q+ AI + LN+ R L+ IQGPPGTGKT L ++ R +QQ ++V+V APT
Sbjct: 61 AGIPFSNEKQRTAIKMALNENRKLVCIQGPPGTGKTFTLTLLLCRLIQQKKQVVVLAPTR 120
Query: 290 AAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRK 348
A+ N + ++ L R+G + + +++ KS A AE R DLRK
Sbjct: 121 EALAN-IRMMTKKTLK--RMGIKVHEHALMDTNEYRDVINKSDRALMAAEEVR---DLRK 174
Query: 349 --DLRQCLKD--DSLAAGIRXXXXXXXXXXXXXXXXXXXXXXSSAQVVLATNTGAADPLI 404
D + ++ D + I ++ V DP +
Sbjct: 175 AFDNGEITENVLDEMRQSIINRVRNEVGAEVIGNVRVAFATIGASFVDFVMKHKKFDPCL 234
Query: 405 RRLD---------TFDLVGK--RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHE 453
+D T+ V K R ++AGD QL ++ + +A G+ S+++R
Sbjct: 235 CIIDEAAQVMEAQTWPAVYKMKRIVMAGDPKQLPALVFTDEAKAFGLQNSVMDRILEKKN 294
Query: 454 GVLATKLTTQYRMNDAIASWASKEMYGGSL---ISSSTVASHLLVDTPFVKPTWITQCPL 510
L QYR N IA+W++ Y L + + H +++ P K PL
Sbjct: 295 NFSWIMLENQYRSNAKIATWSNTCFYHNQLKTDVKCHEYSLHTILN-PQPKKFRNLFDPL 353
Query: 511 LLLDTRL 517
+L+DT L
Sbjct: 354 VLIDTSL 360
Score = 185 (70.2 bits), Expect = 3.7e-27, Sum P(2) = 3.7e-27
Identities = 52/145 (35%), Positives = 78/145 (53%)
Query: 509 PLLLLDTRLPYG-SLSLGCEEH-------LDLAGTG-SFYNEGEAEIVVHHVFSLICAGV 559
PL+L+DT L L EH ++ G S+ N EA+I + H L+ GV
Sbjct: 352 PLVLIDTSLERDVEKRLETYEHAVFDTNSINKTKQGFSYANLAEAKIAIGHYQRLLKYGV 411
Query: 560 SPSAIAVQSPYVAQVQHLRERLDDLPEAAG----VE--VATIDSFQGREADAVIISMVRS 613
PS IA+ +PY Q + + +++ G V+ + T+DS QG+E + VI +MVRS
Sbjct: 412 QPSDIAIITPYKGQTSLVTKLMEEFGAETGYTDFVQTTIGTVDSVQGKEYEVVIFTMVRS 471
Query: 614 NTLGAVGFLGDSRRMNVAITRACKH 638
N +GF+ + RR+NV ITRA +H
Sbjct: 472 NPRKTMGFVSELRRLNVVITRAKRH 496
>WB|WBGene00001016 [details] [associations]
symbol:dna-2 species:6239 "Caenorhabditis elegans"
[GO:0043142 "single-stranded DNA-dependent ATPase activity"
evidence=IEA;IDA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA] [GO:0033567 "DNA replication, Okazaki fragment
processing" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0043141 "ATP-dependent 5'-3' DNA helicase
activity" evidence=IDA] [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=IDA] [GO:0006259 "DNA
metabolic process" evidence=IDA] InterPro:IPR026851
InterPro:IPR014808 Pfam:PF08696 GO:GO:0005634 GO:GO:0009792
eggNOG:COG1112 GO:GO:0017108 GO:GO:0000014 GO:GO:0043142
GO:GO:0033567 PANTHER:PTHR10887:SF14 KO:K10742
GeneTree:ENSGT00550000074852 OMA:EHESLCH GO:GO:0043141 EMBL:Z50070
PIR:T22132 RefSeq:NP_496515.1 ProteinModelPortal:Q20371 SMR:Q20371
STRING:Q20371 PaxDb:Q20371 PRIDE:Q20371 EnsemblMetazoa:F43G6.1a
GeneID:174809 KEGG:cel:CELE_F43G6.1 UCSC:F43G6.1a CTD:174809
WormBase:F43G6.1a HOGENOM:HOG000016745 InParanoid:Q20371
NextBio:885596 ArrayExpress:Q20371 Uniprot:Q20371
Length = 1105
Score = 268 (99.4 bits), Expect = 7.9e-27, Sum P(2) = 7.9e-27
Identities = 85/245 (34%), Positives = 125/245 (51%)
Query: 418 ILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKE 477
+L GD QL P+++SRKA + G G+S +E+ H GV+ + LT+QYRMN I+ +SK
Sbjct: 847 VLVGDCKQLTPLVVSRKAKQEGAGISTMEKLQQSHPGVVVS-LTSQYRMNREISVLSSKL 905
Query: 478 MYGGSLISSSTVASHLLVD------------TPFVKPTWITQCP--LLLLDTRLPYGSLS 523
Y LI + S +D + ++ + LDT+ S
Sbjct: 906 FYENRLICGNESVSRSSLDRTGDYIVAMDDGSDHIRKALSGDIKDSCVFLDTQSTINS-K 964
Query: 524 LGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDD 583
+ CE D G G N+GEA+++ + +GV P I V S Y QV H+R L+
Sbjct: 965 MQCE---DGEG-GGMCNDGEAKLISELCQQFVMSGVKPHEIGVMSAYRRQVDHIRGILNS 1020
Query: 584 LPEAAGVEVATIDSFQGREADAVIISMV-RSNTLGAVGFLGDSRRMNVAITRACKHVAVV 642
E +EV TIDS+QGRE +I S+ +N+ L D RR+NVA+TRA + + VV
Sbjct: 1021 -DE---LEVNTIDSYQGREKRVIIWSLTWTNNSTKKSELLKDERRVNVALTRARQKLVVV 1076
Query: 643 -CDSS 646
C +S
Sbjct: 1077 GCKNS 1081
Score = 121 (47.7 bits), Expect = 7.9e-27, Sum P(2) = 7.9e-27
Identities = 34/111 (30%), Positives = 65/111 (58%)
Query: 230 IMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTN 289
I+ ++ Q+KA+ L + ++++G PG+GKT L+ +I V ++VL+ A T+
Sbjct: 681 IIKAKLNNEQRKAVVHALATE-DFMMVEGLPGSGKTTLISVLIQCLVATNKKVLLAAFTH 739
Query: 290 AAVDNMVEKLS-DVGLN-IVRVGNPARISPAVASKSLGEIVKSKLASFVAE 338
+AVDN++ KL+ +V I+R+G+ + I + +L K+KL + +E
Sbjct: 740 SAVDNILTKLTKEVAAEKILRLGSSSSIKDDIKKMTL----KAKLENETSE 786
>UNIPROTKB|H0Y455 [details] [associations]
symbol:DNA2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:9606 "Homo sapiens" [GO:0017108
"5'-flap endonuclease activity" evidence=IEA] [GO:0033567 "DNA
replication, Okazaki fragment processing" evidence=IEA] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR026851 GO:GO:0017108 GO:GO:0043142 GO:GO:0033567
PANTHER:PTHR10887:SF14 EMBL:AL136233 HGNC:HGNC:2939
ProteinModelPortal:H0Y455 PRIDE:H0Y455 Ensembl:ENST00000440722
Bgee:H0Y455 Uniprot:H0Y455
Length = 375
Score = 274 (101.5 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 88/261 (33%), Positives = 132/261 (50%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
+R +L GD QL P++L+R+A G+ SL +R V+ +LT QYRMN I S +
Sbjct: 102 RRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKSAVV--QLTVQYRMNSKIMSLS 159
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVKPTWI--------TQCPLLL--LDTRLPYGSLSL 524
+K Y G L S ++ +++ K + + P L+ + P L+
Sbjct: 160 NKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYADYSDNPWLMGVFEPNNPVCFLNT 219
Query: 525 GCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL 584
+ G N EA+++V + AG SPS I + +PY Q++ + D L
Sbjct: 220 DKVPAPEQVEKGGVSNVTEAKLIVFLTSIFVKAGCSPSDIGIIAPYRQQLKIIN---DLL 276
Query: 585 PEAAG-VEVATIDSFQGREADAVIISMVRSNTLGAVG-FLGDSRRMNVAITRACKHVAVV 642
+ G VEV T+D +QGR+ V++S VRSN G VG L D RR+NVAITRA KH ++
Sbjct: 277 ARSIGMVEVNTVDKYQGRDKSIVLVSFVRSNKDGTVGELLKDWRRLNVAITRA-KHKLIL 335
Query: 643 --CDSSTICHNTFLARLLRHI 661
C S C+ L +LL H+
Sbjct: 336 LGCVPSLNCYPP-LEKLLNHL 355
Score = 68 (29.0 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 290 AAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFE 340
+AVDN++ KL+ + +R+G ++ PA+ + EI +SK +A E
Sbjct: 2 SAVDNILLKLAKFKIGFLRLGQIQKVHPAIQQFTEQEICRSKSIKSLALLE 52
>MGI|MGI:2443732 [details] [associations]
symbol:Dna2 "DNA replication helicase 2 homolog (yeast)"
species:10090 "Mus musculus" [GO:0000076 "DNA replication
checkpoint" evidence=ISO] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000729 "DNA double-strand break processing"
evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=ISO]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0006260 "DNA
replication" evidence=ISO] [GO:0006264 "mitochondrial DNA
replication" evidence=ISO] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0008152
"metabolic process" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=ISO] [GO:0017108
"5'-flap endonuclease activity" evidence=ISO] [GO:0032508 "DNA
duplex unwinding" evidence=ISO] [GO:0033567 "DNA replication,
Okazaki fragment processing" evidence=ISO] [GO:0042645
"mitochondrial nucleoid" evidence=ISO] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=ISO] [GO:0043139
"5'-3' DNA helicase activity" evidence=ISO] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=ISO]
[GO:0043504 "mitochondrial DNA repair" evidence=ISO] [GO:0045740
"positive regulation of DNA replication" evidence=ISO] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051536 "iron-sulfur cluster
binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] InterPro:IPR026851 InterPro:IPR014808
MGI:MGI:2443732 Pfam:PF08696 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0006284 GO:GO:0003677 GO:GO:0051539
GO:GO:0042645 GO:GO:0016890 eggNOG:COG1112 GO:GO:0045740
GO:GO:0000729 GO:GO:0017108 GO:GO:0000076 GO:GO:0043137
GO:GO:0005760 GO:GO:0043139 GO:GO:0043142 GO:GO:0043504
GO:GO:0006264 PANTHER:PTHR10887:SF14 CTD:1763 HOGENOM:HOG000168456
HOVERGEN:HBG081456 KO:K10742 EMBL:AK129051 EMBL:AK028381
EMBL:BC025182 EMBL:BC115716 IPI:IPI00224915 IPI:IPI00816966
RefSeq:NP_796346.2 UniGene:Mm.21492 ProteinModelPortal:Q6ZQJ5
SMR:Q6ZQJ5 STRING:Q6ZQJ5 PaxDb:Q6ZQJ5 PRIDE:Q6ZQJ5
Ensembl:ENSMUST00000092462 Ensembl:ENSMUST00000131422 GeneID:327762
KEGG:mmu:327762 UCSC:uc007fji.2 UCSC:uc007fjj.2
GeneTree:ENSGT00550000074852 InParanoid:Q6ZQJ5 OMA:EHESLCH
ChiTaRS:DNA2 NextBio:397947 Bgee:Q6ZQJ5 CleanEx:MM_DNA2
Genevestigator:Q6ZQJ5 GermOnline:ENSMUSG00000036875 Uniprot:Q6ZQJ5
Length = 1062
Score = 263 (97.6 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 85/260 (32%), Positives = 132/260 (50%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
+R +L GD QL P++++R+A G+ SL +R V+ +LT QYRMN I S +
Sbjct: 781 RRFVLVGDHQQLPPLVVNREARALGMSESLFKRLERNESAVV--QLTVQYRMNRKIMSLS 838
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVKPTWIT--------QCPLL--LLDTRLPYGSLSL 524
+K Y G L S ++ ++ P +K ++ P L +L+ P L+
Sbjct: 839 NKLTYAGKLECGSDRVANAVLALPNLKDARLSLQLYADYSDSPWLAGVLEPDNPVCFLNT 898
Query: 525 GCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL 584
+ G N EA ++V + I AG SPS I V +PY Q++ + + L
Sbjct: 899 DKVPAPEQVENGGVSNVTEARLIVFLTSTFIKAGCSPSDIGVIAPYRQQLRIISDLL--A 956
Query: 585 PEAAG-VEVATIDSFQGREADAVIISMVRSNTLGAVG-FLGDSRRMNVAITRACKHVAVV 642
+ G VEV T+D +QGR+ +++S VRSN G +G L D RR+NVA+TRA KH ++
Sbjct: 957 RSSVGMVEVNTVDKYQGRDKSLILVSFVRSNEDGTLGELLKDWRRLNVALTRA-KHKLIL 1015
Query: 643 CDS-STICHNTFLARLLRHI 661
S S++ L L H+
Sbjct: 1016 LGSVSSLKRFPPLGTLFDHL 1035
Score = 124 (48.7 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 51/191 (26%), Positives = 93/191 (48%)
Query: 151 DPTFSKLFGKSV-RIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKE 209
D S L +V R+DR + D T N LM + KR + ++ F + +
Sbjct: 549 DRNLSTLPATTVFRLDREERHGDISTPLGNLSKLM--ESTDPSKR---LRELIIDFREPQ 603
Query: 210 DVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLK 269
+ +L + L ++ + I+ K + Q++A+ L K LI+ G PGTGKT +
Sbjct: 604 FIAYLS-SVLPHDAKDTVANIL-KGLNKPQRQAMKRVLLSKDYTLIV-GMPGTGKTTTIC 660
Query: 270 EIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVK 329
++ G VL+T+ T++AVDN++ KL+ + +R+G ++ P + + EI +
Sbjct: 661 ALVRILSACGFSVLLTSYTHSAVDNILLKLAKFKVGFLRLGQSHKVHPDIQKFTEEEICR 720
Query: 330 SKLASFVAEFE 340
S+ + +A E
Sbjct: 721 SRSIASLAHLE 731
>UNIPROTKB|E1BMP7 [details] [associations]
symbol:DNA2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:9913 "Bos taurus" [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=ISS]
[GO:0043139 "5'-3' DNA helicase activity" evidence=ISS] [GO:0017108
"5'-flap endonuclease activity" evidence=ISS] [GO:0004518 "nuclease
activity" evidence=ISS] [GO:0003678 "DNA helicase activity"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0033567
"DNA replication, Okazaki fragment processing" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0000729 "DNA
double-strand break processing" evidence=ISS] [GO:0000076 "DNA
replication checkpoint" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0045740 "positive regulation of DNA replication"
evidence=IEA] [GO:0043504 "mitochondrial DNA repair" evidence=IEA]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IEA]
[GO:0042645 "mitochondrial nucleoid" evidence=IEA] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006264 "mitochondrial DNA replication"
evidence=IEA] [GO:0005760 "gamma DNA polymerase complex"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR026851
InterPro:IPR014808 Pfam:PF08696 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0006284 GO:GO:0003677 GO:GO:0051539
GO:GO:0042645 GO:GO:0016890 GO:GO:0045740 GO:GO:0000729
GO:GO:0017108 GO:GO:0000076 GO:GO:0043137 EMBL:DAAA02061817
IPI:IPI00688022 NextBio:20878938 GO:GO:0005760 GO:GO:0043139
GO:GO:0043142 GO:GO:0033567 GO:GO:0043504 GO:GO:0006264
PANTHER:PTHR10887:SF14 Uniprot:E1BMP7
Length = 1061
Score = 264 (98.0 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 87/261 (33%), Positives = 132/261 (50%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
+R +L GD QL P++L+R+A G+ SL +R V+ +LT QYRMN I S +
Sbjct: 780 RRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKNAVV--QLTVQYRMNSKIMSLS 837
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVKPTWI--------TQCPLLL--LDTRLPYGSLSL 524
+K Y G L S ++ +++ P K + ++ P L+ + P L+
Sbjct: 838 NKLTYEGKLECGSDKVANAVINLPNFKDVKLELEFYADYSENPWLIAAFEPNNPVCFLNT 897
Query: 525 GCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL 584
+ G N EA++VV I AG PS I + +PY Q++ + + L
Sbjct: 898 HKVPAPEQVEKGGVSNIMEAKLVVFLTSVFIKAGCKPSDIGIIAPYRQQLKVISDLLAQ- 956
Query: 585 PEAAG-VEVATIDSFQGREADAVIISMVRSNTLGAVG-FLGDSRRMNVAITRACKHVAVV 642
+ G VEV T+D +QGR+ V++S VRSN G +G L D RR+NVAITRA KH ++
Sbjct: 957 -SSVGMVEVNTVDRYQGRDKSIVVVSFVRSNEDGTLGELLKDWRRLNVAITRA-KHKLIL 1014
Query: 643 --CDSSTICHNTFLARLLRHI 661
C S + L +LL H+
Sbjct: 1015 LGCVPS-LSRYPPLRKLLNHL 1034
Score = 121 (47.7 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 34/108 (31%), Positives = 58/108 (53%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAV 292
K + Q++A+ L K LI+ G PGTGKT + ++ G VL+T+ T++AV
Sbjct: 624 KGLNKPQRQAMKKVLLSKDYTLIV-GMPGTGKTTTICTLVRILYACGFSVLLTSYTHSAV 682
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFE 340
DN++ KL+ + +R+G ++ P + + EI +SK +A E
Sbjct: 683 DNILLKLAKFKIGFLRLGQIQKVHPDIQKFTEEEICRSKSIKSLALLE 730
>UNIPROTKB|J9NRI6 [details] [associations]
symbol:DNA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] [GO:0033567 "DNA replication, Okazaki
fragment processing" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=IEA] InterPro:IPR026851
InterPro:IPR014001 PROSITE:PS51192 GO:GO:0017108 GO:GO:0043142
GO:GO:0033567 PANTHER:PTHR10887:SF14 GeneTree:ENSGT00550000074852
EMBL:AAEX03002775 EMBL:AAEX03002776 EMBL:AAEX03002777
Ensembl:ENSCAFT00000046272 Uniprot:J9NRI6
Length = 640
Score = 262 (97.3 bits), Expect = 2.2e-26, Sum P(2) = 2.2e-26
Identities = 84/260 (32%), Positives = 131/260 (50%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
+R +L GD QL P++L+R+A G+ SL +R V+ +LT QYRMN I S +
Sbjct: 359 QRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKNAVV--QLTVQYRMNSKIMSLS 416
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVKPTWI--------TQCPLLL--LDTRLPYGSLSL 524
+K Y G L S ++ +V+ P +K + ++ P ++ + P L+
Sbjct: 417 NKLTYDGKLECGSDKVANAVVNLPNLKDVKLELEFYADYSENPWMIGAFEPNNPVCFLNT 476
Query: 525 GCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL 584
+ G N EA+++V I AG PS I + +PY Q++ + + L
Sbjct: 477 DKVPAPEQVEKGGVSNITEAKLIVFLTSVFIKAGCKPSDIGIIAPYRQQLKIINDLLFH- 535
Query: 585 PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVG-FLGDSRRMNVAITRACKHVAVV- 642
VEV T+D +QGR+ +++S VRSN G +G L D RR+NVAITRA KH ++
Sbjct: 536 SSIRMVEVNTVDKYQGRDKSIILVSFVRSNKDGPIGELLKDWRRLNVAITRA-KHKLILL 594
Query: 643 -CDSSTICHNTFLARLLRHI 661
C S + L +LL H+
Sbjct: 595 GCVPSLNRYPP-LGKLLHHL 613
Score = 115 (45.5 bits), Expect = 2.2e-26, Sum P(2) = 2.2e-26
Identities = 35/122 (28%), Positives = 61/122 (50%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAV 292
K + Q++A+ L K LI+ G PGTGKT + ++ G VL+T+ T++AV
Sbjct: 203 KGLNKPQRQAMKKVLLSKDYTLIV-GMPGTGKTTTICTLVRILYTCGFSVLLTSYTHSAV 261
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQ 352
DN++ KL+ + +R+G ++ + + EI +SK +A E + R
Sbjct: 262 DNILLKLAKFKIGFLRLGRTQKVHQDIQKFTEEEICRSKPIKSLALLEELYNSHRIVATT 321
Query: 353 CL 354
C+
Sbjct: 322 CM 323
>UNIPROTKB|K7DXW3 [details] [associations]
symbol:DNA2 "DNA replication nuclease DNA2" species:9913
"Bos taurus" [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] [GO:0033567 "DNA replication, Okazaki
fragment processing" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=IEA] InterPro:IPR026851
InterPro:IPR014808 Pfam:PF08696 EMBL:DAAA02061817
PANTHER:PTHR10887:SF14 GeneTree:ENSGT00550000074852
Ensembl:ENSBTAT00000003395 Uniprot:K7DXW3
Length = 1137
Score = 264 (98.0 bits), Expect = 2.4e-26, Sum P(2) = 2.4e-26
Identities = 87/261 (33%), Positives = 132/261 (50%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
+R +L GD QL P++L+R+A G+ SL +R V+ +LT QYRMN I S +
Sbjct: 856 RRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKNAVV--QLTVQYRMNSKIMSLS 913
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVKPTWI--------TQCPLLL--LDTRLPYGSLSL 524
+K Y G L S ++ +++ P K + ++ P L+ + P L+
Sbjct: 914 NKLTYEGKLECGSDKVANAVINLPNFKDVKLELEFYADYSENPWLIAAFEPNNPVCFLNT 973
Query: 525 GCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL 584
+ G N EA++VV I AG PS I + +PY Q++ + + L
Sbjct: 974 HKVPAPEQVEKGGVSNIMEAKLVVFLTSVFIKAGCKPSDIGIIAPYRQQLKVISDLLAQ- 1032
Query: 585 PEAAG-VEVATIDSFQGREADAVIISMVRSNTLGAVG-FLGDSRRMNVAITRACKHVAVV 642
+ G VEV T+D +QGR+ V++S VRSN G +G L D RR+NVAITRA KH ++
Sbjct: 1033 -SSVGMVEVNTVDRYQGRDKSIVVVSFVRSNEDGTLGELLKDWRRLNVAITRA-KHKLIL 1090
Query: 643 --CDSSTICHNTFLARLLRHI 661
C S + L +LL H+
Sbjct: 1091 LGCVPS-LSRYPPLRKLLNHL 1110
Score = 121 (47.7 bits), Expect = 2.4e-26, Sum P(2) = 2.4e-26
Identities = 34/108 (31%), Positives = 58/108 (53%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAV 292
K + Q++A+ L K LI+ G PGTGKT + ++ G VL+T+ T++AV
Sbjct: 700 KGLNKPQRQAMKKVLLSKDYTLIV-GMPGTGKTTTICTLVRILYACGFSVLLTSYTHSAV 758
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFE 340
DN++ KL+ + +R+G ++ P + + EI +SK +A E
Sbjct: 759 DNILLKLAKFKIGFLRLGQIQKVHPDIQKFTEEEICRSKSIKSLALLE 806
>RGD|1306791 [details] [associations]
symbol:Dna2 "DNA replication helicase 2 homolog (yeast)"
species:10116 "Rattus norvegicus" [GO:0000076 "DNA replication
checkpoint" evidence=ISO;ISS] [GO:0000729 "DNA double-strand break
processing" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=ISO;ISS] [GO:0003678 "DNA helicase activity"
evidence=ISO;ISS] [GO:0004518 "nuclease activity" evidence=ISO;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005760 "gamma DNA polymerase complex"
evidence=IEA;ISO] [GO:0006260 "DNA replication" evidence=ISO;ISS]
[GO:0006264 "mitochondrial DNA replication" evidence=IEA;ISO]
[GO:0006284 "base-excision repair" evidence=IEA;ISO] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=IEA;ISO] [GO:0017108 "5'-flap endonuclease activity"
evidence=ISO;ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0033567 "DNA replication, Okazaki fragment processing"
evidence=ISO;ISS] [GO:0042645 "mitochondrial nucleoid"
evidence=IEA;ISO] [GO:0043137 "DNA replication, removal of RNA
primer" evidence=IEA;ISO] [GO:0043139 "5'-3' DNA helicase activity"
evidence=ISO;ISS] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=ISO;ISS] [GO:0043504 "mitochondrial DNA repair"
evidence=IEA;ISO] [GO:0045740 "positive regulation of DNA
replication" evidence=IEA;ISO] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR026851 InterPro:IPR014808 Pfam:PF08696
RGD:1306791 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0006284
GO:GO:0003677 GO:GO:0051539 GO:GO:0042645 GO:GO:0016890
GO:GO:0045740 GO:GO:0000729 GO:GO:0017108 GO:GO:0000076
GO:GO:0043137 GO:GO:0005760 GO:GO:0043139 GO:GO:0043142
GO:GO:0033567 GO:GO:0043504 GO:GO:0006264 PANTHER:PTHR10887:SF14
GeneTree:ENSGT00550000074852 IPI:IPI00368049
ProteinModelPortal:D3ZG52 Ensembl:ENSRNOT00000000438
UCSC:RGD:1306791 OrthoDB:EOG4CZBF7 Uniprot:D3ZG52
Length = 1059
Score = 267 (99.0 bits), Expect = 4.9e-26, Sum P(2) = 4.9e-26
Identities = 85/258 (32%), Positives = 132/258 (51%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
+R +L GD QL P++L+R+A G+ SL +R V+ +LT QYRMN I S +
Sbjct: 780 RRFVLVGDHKQLPPLVLNREARALGMSESLFKRLERNESAVV--QLTIQYRMNRKIMSLS 837
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVKPTWI------TQCPLL--LLDTRLPYGSLSLGC 526
+K Y G L S ++ ++ P +K + + P L + + P L+
Sbjct: 838 NKLTYEGKLECGSDRVANAVITLPNLKDVRLEFYADYSDNPWLAGVFEPDNPVCFLNTDK 897
Query: 527 EEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPE 586
+ G N EA ++V + I AG SPS I + +PY Q++ + + L
Sbjct: 898 VPAPEQIENGGVSNVTEARLIVFLTSTFIKAGCSPSDIGIIAPYRQQLRTITDLL--ARS 955
Query: 587 AAG-VEVATIDSFQGREADAVIISMVRSNTLGAVG-FLGDSRRMNVAITRACKHVAVVCD 644
+ G VEV T+D +QGR+ +++S VRSN G +G L D RR+NVAITRA KH ++
Sbjct: 956 SVGMVEVNTVDKYQGRDKSLILVSFVRSNEDGTLGELLKDWRRLNVAITRA-KHKLILLG 1014
Query: 645 S-STICHNTFLARLLRHI 661
S S++ L +L H+
Sbjct: 1015 SVSSLKRFPPLEKLFDHL 1032
Score = 114 (45.2 bits), Expect = 4.9e-26, Sum P(2) = 4.9e-26
Identities = 46/181 (25%), Positives = 85/181 (46%)
Query: 163 RIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEE---NDL 219
R+DR + D T N LM + KR + ++ F + + + +L +D
Sbjct: 561 RLDREEKHGDINTPLGNLSKLM--ENTDSSKR---LRELIIDFKEPQFIAYLSSVLPHDA 615
Query: 220 ADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG 279
D L G+ K + KK + L+K L++ G PGTGKT + ++ G
Sbjct: 616 KDTVANILKGL-NKPQRQAMKKVL---LSKDYTLIV--GMPGTGKTTTICALVRILSACG 669
Query: 280 ERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEF 339
VL+T+ T++AVDN++ KL+ + +R+G ++ P + + E+ + + + +A
Sbjct: 670 FSVLLTSYTHSAVDNILLKLAKFKIGFLRLGQSHKVHPDIQKFTEEEMCRLRSIASLAHL 729
Query: 340 E 340
E
Sbjct: 730 E 730
Score = 48 (22.0 bits), Expect = 3.8e-19, Sum P(2) = 3.8e-19
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 3 LERVKT--IQSRLDEFTQRMSE--LLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFL 58
++R+ T + LD + E L R++R+ + L + EN+DSSK + L
Sbjct: 535 VKRIDTAAVTCLLDRNLSTLPETTLFRLDREEKHGDINTPLGNLSKLMENTDSSKRLREL 594
Query: 59 VSHGRAPQ 66
+ + PQ
Sbjct: 595 IIDFKEPQ 602
>UNIPROTKB|F6UZP1 [details] [associations]
symbol:DNA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] [GO:0033567 "DNA replication, Okazaki
fragment processing" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=IEA] InterPro:IPR026851
InterPro:IPR014808 Pfam:PF08696 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0017108 GO:GO:0043142 GO:GO:0033567 PANTHER:PTHR10887:SF14
GeneTree:ENSGT00550000074852 OMA:EHESLCH Ensembl:ENSCAFT00000021752
EMBL:AAEX03002775 EMBL:AAEX03002776 EMBL:AAEX03002777
Uniprot:F6UZP1
Length = 1021
Score = 262 (97.3 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
Identities = 84/260 (32%), Positives = 131/260 (50%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
+R +L GD QL P++L+R+A G+ SL +R V+ +LT QYRMN I S +
Sbjct: 748 QRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKNAVV--QLTVQYRMNSKIMSLS 805
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVKPTWI--------TQCPLLL--LDTRLPYGSLSL 524
+K Y G L S ++ +V+ P +K + ++ P ++ + P L+
Sbjct: 806 NKLTYDGKLECGSDKVANAVVNLPNLKDVKLELEFYADYSENPWMIGAFEPNNPVCFLNT 865
Query: 525 GCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL 584
+ G N EA+++V I AG PS I + +PY Q++ + + L
Sbjct: 866 DKVPAPEQVEKGGVSNITEAKLIVFLTSVFIKAGCKPSDIGIIAPYRQQLKIINDLLFH- 924
Query: 585 PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVG-FLGDSRRMNVAITRACKHVAVV- 642
VEV T+D +QGR+ +++S VRSN G +G L D RR+NVAITRA KH ++
Sbjct: 925 SSIRMVEVNTVDKYQGRDKSIILVSFVRSNKDGPIGELLKDWRRLNVAITRA-KHKLILL 983
Query: 643 -CDSSTICHNTFLARLLRHI 661
C S + L +LL H+
Sbjct: 984 GCVPSLNRYPP-LGKLLHHL 1002
Score = 115 (45.5 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
Identities = 35/122 (28%), Positives = 61/122 (50%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAV 292
K + Q++A+ L K LI+ G PGTGKT + ++ G VL+T+ T++AV
Sbjct: 592 KGLNKPQRQAMKKVLLSKDYTLIV-GMPGTGKTTTICTLVRILYTCGFSVLLTSYTHSAV 650
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQ 352
DN++ KL+ + +R+G ++ + + EI +SK +A E + R
Sbjct: 651 DNILLKLAKFKIGFLRLGRTQKVHQDIQKFTEEEICRSKPIKSLALLEELYNSHRIVATT 710
Query: 353 CL 354
C+
Sbjct: 711 CM 712
>UNIPROTKB|E2QSH2 [details] [associations]
symbol:E2QSH2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] [GO:0033567 "DNA replication, Okazaki
fragment processing" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=IEA] InterPro:IPR026851
InterPro:IPR014808 Pfam:PF08696 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0017108 GO:GO:0043142 GO:GO:0033567 PANTHER:PTHR10887:SF14
Ensembl:ENSCAFT00000021752 Uniprot:E2QSH2
Length = 1040
Score = 262 (97.3 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 84/260 (32%), Positives = 131/260 (50%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
+R +L GD QL P++L+R+A G+ SL +R V+ +LT QYRMN I S +
Sbjct: 779 QRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKNAVV--QLTVQYRMNSKIMSLS 836
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVKPTWI--------TQCPLLL--LDTRLPYGSLSL 524
+K Y G L S ++ +V+ P +K + ++ P ++ + P L+
Sbjct: 837 NKLTYDGKLECGSDKVANAVVNLPNLKDVKLELEFYADYSENPWMIGAFEPNNPVCFLNT 896
Query: 525 GCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL 584
+ G N EA+++V I AG PS I + +PY Q++ + + L
Sbjct: 897 DKVPAPEQVEKGGVSNITEAKLIVFLTSVFIKAGCKPSDIGIIAPYRQQLKIINDLLFH- 955
Query: 585 PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVG-FLGDSRRMNVAITRACKHVAVV- 642
VEV T+D +QGR+ +++S VRSN G +G L D RR+NVAITRA KH ++
Sbjct: 956 SSIRMVEVNTVDKYQGRDKSIILVSFVRSNKDGPIGELLKDWRRLNVAITRA-KHKLILL 1014
Query: 643 -CDSSTICHNTFLARLLRHI 661
C S + L +LL H+
Sbjct: 1015 GCVPSLNRYPP-LGKLLHHL 1033
Score = 115 (45.5 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 35/122 (28%), Positives = 61/122 (50%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAV 292
K + Q++A+ L K LI+ G PGTGKT + ++ G VL+T+ T++AV
Sbjct: 623 KGLNKPQRQAMKKVLLSKDYTLIV-GMPGTGKTTTICTLVRILYTCGFSVLLTSYTHSAV 681
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQ 352
DN++ KL+ + +R+G ++ + + EI +SK +A E + R
Sbjct: 682 DNILLKLAKFKIGFLRLGRTQKVHQDIQKFTEEEICRSKPIKSLALLEELYNSHRIVATT 741
Query: 353 CL 354
C+
Sbjct: 742 CM 743
>UNIPROTKB|Q4S102 [details] [associations]
symbol:GSTENG00025786001 "Chromosome 5 SCAF14773, whole
genome shotgun sequence." species:99883 "Tetraodon nigroviridis"
[GO:0006264 "mitochondrial DNA replication" evidence=ISS]
[GO:0006284 "base-excision repair" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0017108 "5'-flap endonuclease activity"
evidence=ISS] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=ISS] [GO:0045740 "positive regulation of DNA replication"
evidence=ISS] [GO:0005760 "gamma DNA polymerase complex"
evidence=ISS] InterPro:IPR026851 InterPro:IPR014808 Pfam:PF08696
GO:GO:0006284 GO:GO:0016890 eggNOG:COG1112 GO:GO:0045740
GO:GO:0017108 GO:GO:0043137 GO:GO:0043142 GO:GO:0006264
PANTHER:PTHR10887:SF14 HOVERGEN:HBG081456 EMBL:CAAE01014773
ProteinModelPortal:Q4S102 STRING:Q4S102 Uniprot:Q4S102
Length = 1043
Score = 266 (98.7 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
Identities = 82/255 (32%), Positives = 129/255 (50%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
+R +L GD QL P++ +++A G+ SL +R LH + +L QYRMN I S +
Sbjct: 786 RRFVLVGDHQQLPPIVQNQEARSLGMDESLFKRLE-LHRDAVV-QLNVQYRMNRQIMSLS 843
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLL--LLDTRLPYGSLS-LGCEE--H 529
+ MY G L S + L+ P + P+ + + L + T LP + L C
Sbjct: 844 NSLMYEGRLECGSERTATSLITLPLL-PSVLPELGSLAWIQATLLPSNPVCFLDCSAVPA 902
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG 589
L+ G N EA ++ + LI AG P I V +PY Q++ + L G
Sbjct: 903 LETVEQGGISNHTEAALIHKLLLLLIKAGCKPGDIGVIAPYRQQLRTISGLLQ-ASAFTG 961
Query: 590 VEVATIDSFQGREADAVIISMVRSNTL-GAVG-FLGDSRRMNVAITRACKHVAVVCDSST 647
VEV T+D +QGR+ +++S VRS G +G L D RR+NVAITRA + ++ ++T
Sbjct: 962 VEVNTVDRYQGRDKSLILLSFVRSTAEEGPLGELLKDWRRLNVAITRAKSKLLMLGSATT 1021
Query: 648 ICHNTFLARLLRHIR 662
+ + +LL H++
Sbjct: 1022 LRRYAPVEKLLNHLQ 1036
Score = 109 (43.4 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
Identities = 33/110 (30%), Positives = 57/110 (51%)
Query: 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAA 291
G + QK+A+ L K LI+ G PGTGKT + ++ G VL+T+ T++A
Sbjct: 630 GAGLNKPQKQAMKKVLLSKDYTLIV-GMPGTGKTTTICTLVRILHACGFSVLLTSYTHSA 688
Query: 292 VDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFER 341
VDN++ KL + +R+G ++ P + + E + K ++E E+
Sbjct: 689 VDNILLKLKRFRVGFLRLGQGQKVHPDILPYT-EESARKKGVHTLSELEQ 737
>TAIR|locus:2200996 [details] [associations]
symbol:SDE3 "SILENCING DEFECTIVE" species:3702
"Arabidopsis thaliana" [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0009616
"virus induced gene silencing" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0035194 "posttranscriptional gene
silencing by RNA" evidence=IMP] InterPro:IPR026127 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005737
eggNOG:COG1112 EMBL:AC005106 GO:GO:0003724 GO:GO:0035194
GO:GO:0009616 HOGENOM:HOG000239755 EMBL:AF339908 EMBL:AK117698
IPI:IPI00521883 PIR:C86189 RefSeq:NP_172037.1 UniGene:At.15329
UniGene:At.42398 ProteinModelPortal:Q8GYD9 SMR:Q8GYD9 STRING:Q8GYD9
PaxDb:Q8GYD9 PRIDE:Q8GYD9 EnsemblPlants:AT1G05460.1 GeneID:837047
KEGG:ath:AT1G05460 GeneFarm:2423 TAIR:At1g05460 InParanoid:Q8GYD9
OMA:DEREGNN PhylomeDB:Q8GYD9 ProtClustDB:CLSN2682016
Genevestigator:Q8GYD9 GermOnline:AT1G05460 PANTHER:PTHR10887:SF165
Uniprot:Q8GYD9
Length = 1002
Score = 242 (90.2 bits), Expect = 4.0e-25, Sum P(3) = 4.0e-25
Identities = 86/254 (33%), Positives = 119/254 (46%)
Query: 418 ILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH---EGV--LATKLTTQYRMNDAIAS 472
+LAGD QL PVI SR A G+G S LER EG TKL YR + I
Sbjct: 570 VLAGDPRQLGPVIYSRDAESLGLGKSYLERLFECDYYCEGDENYVTKLVKNYRCHPEILD 629
Query: 473 WASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDL 532
SK Y G L++S +L F+ P + P++ YG GC+E
Sbjct: 630 LPSKLFYDGELVASKEDTDSVLASLNFL-PN--KEFPMVF------YGIQ--GCDERE-- 676
Query: 533 AGTGSFYNEGEAEIVVHHVFSLICAG-VSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVE 591
S++N E V+ + L V I V +PY QV ++E LD L + V+
Sbjct: 677 GNNPSWFNRIEISKVIETIKRLTANDCVQEEDIGVITPYRQQVMKIKEVLDRL-DMTEVK 735
Query: 592 VATIDSFQGREADAVIISMVRS----NTLG---AVGFLGDSRRMNVAITRACKHVAVVCD 644
V +++ FQG+E +IIS VRS N +GFL + RR NVAITRA + ++ +
Sbjct: 736 VGSVEQFQGQEKQVIIISTVRSTIKHNEFDRAYCLGFLSNPRRFNVAITRAISLLVIIGN 795
Query: 645 SSTICHNTFLARLL 658
IC + +LL
Sbjct: 796 PHIICKDMNWNKLL 809
Score = 128 (50.1 bits), Expect = 4.0e-25, Sum P(3) = 4.0e-25
Identities = 38/95 (40%), Positives = 54/95 (56%)
Query: 243 IALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR--AVQQGERVLVTAPTNAAVDNMVEKLS 300
+ LG K P +I GPPGTGKT L E I + Q+ RVLV AP+N+A D+++EKL
Sbjct: 407 MVLGC-KGAPPYVIHGPPGTGKTMTLVEAIVQLYTTQRNARVLVCAPSNSAADHILEKL- 464
Query: 301 DVGLNIVRVGNPARISPAVASKSLGEIVKSKLASF 335
+ L VR+ + A++S EI K ++ F
Sbjct: 465 -LCLEGVRIKDNEIFRLNAATRSYEEI-KPEIIRF 497
Score = 48 (22.0 bits), Expect = 4.0e-25, Sum P(3) = 4.0e-25
Identities = 22/66 (33%), Positives = 28/66 (42%)
Query: 86 GMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVAL 145
G++L L V G P+ L GD + VR G QGFVH + D + A
Sbjct: 278 GIYLSL-EVPGLAERRPS-LVHGDFIFVRHAYDDGT--DHAYQGFVHRVEADEVHMKFAS 333
Query: 146 E--SRH 149
E RH
Sbjct: 334 EFHQRH 339
Score = 39 (18.8 bits), Expect = 5.6e-16, Sum P(3) = 5.6e-16
Identities = 20/69 (28%), Positives = 36/69 (52%)
Query: 273 ARAVQQGE--RVLVTAPTNAAV-DNMVEKLSDVGLN---IVRVGNPARISPAVASK---S 323
A V +G +L+ A+ +NM+ +S++ L +V G+P ++ P + S+ S
Sbjct: 531 AEGVNRGHFTHILLDEAGQASEPENMIA-VSNLCLTETVVVLAGDPRQLGPVIYSRDAES 589
Query: 324 LGEIVKSKL 332
LG + KS L
Sbjct: 590 LG-LGKSYL 597
>POMBASE|SPBC16D10.04c [details] [associations]
symbol:dna2 "DNA replication endonuclease-helicase
Dna2" species:4896 "Schizosaccharomyces pombe" [GO:0000084 "S phase
of mitotic cell cycle" evidence=IC] [GO:0000723 "telomere
maintenance" evidence=IGI] [GO:0000784 "nuclear chromosome,
telomeric region" evidence=ISO] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISO] [GO:0004518 "nuclease activity"
evidence=IMP] [GO:0004527 "exonuclease activity" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0005657 "replication fork" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006281 "DNA repair" evidence=ISS] [GO:0017108
"5'-flap endonuclease activity" evidence=ISO] [GO:0019901 "protein
kinase binding" evidence=IPI] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IMP] [GO:0031860 "telomeric 3' overhang
formation" evidence=IMP] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IMP] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0071932 "replication fork reversal" evidence=IMP]
InterPro:IPR026851 PomBase:SPBC16D10.04c InterPro:IPR014808
Pfam:PF08696 GO:GO:0005829 GO:GO:0005524 GO:GO:0046872
EMBL:CU329671 GO:GO:0006281 GenomeReviews:CU329671_GR GO:GO:0051539
GO:GO:0043596 GO:GO:0004003 GO:GO:0004527 GO:GO:0000084
eggNOG:COG1112 GO:GO:0000784 GO:GO:0042162 GO:GO:0031573
GO:GO:0017108 GO:GO:0043137 GO:GO:0031860 GO:GO:0043142
PANTHER:PTHR10887:SF14 EMBL:AF144384 EMBL:AB028014 EMBL:AF075169
PIR:T39568 PIR:T47242 PIR:T51292 RefSeq:NP_596499.2 STRING:Q9URU2
GeneID:2540148 OrthoDB:EOG47H8Z4 NextBio:20801284 GO:GO:0071932
InterPro:IPR022765 Pfam:PF01930 Uniprot:Q9URU2
Length = 1397
Score = 253 (94.1 bits), Expect = 1.7e-24, Sum P(3) = 1.7e-24
Identities = 77/255 (30%), Positives = 128/255 (50%)
Query: 413 VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIAS 472
+ ++ +L GD QL P++ + + + G+ +SL + + H + T L QYRMN+ I S
Sbjct: 1081 LAEKFVLVGDHYQLPPLVKNSRTSKDGLSLSLFKLLSEKHPEAVTT-LRLQYRMNEDINS 1139
Query: 473 WASKEMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHL 530
+S+ +YGG+L+ S S L++ + L +L S S+
Sbjct: 1140 LSSELIYGGNLVCGSKTISQKKLILPKAHLSDGLPDSSSSLHWVNKLINPSHSVIFFNTD 1199
Query: 531 DLAGTGS-----FYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLP 585
D+ G S N EA ++ V S + GV S+I + S Y +QV+ L + L
Sbjct: 1200 DILGVESKTNNILENHTEAFLIEQAVSSFLERGVKQSSIGIISIYKSQVELLSKNLKSFT 1259
Query: 586 EAAGVEVATIDSFQGREADAVIISMVRSNTLGAVG-FLGDSRRMNVAITRACKHVAVVCD 644
E +E+ T+D +QGR+ D ++IS VRSN+ VG L D R+NVA++RA +
Sbjct: 1260 E---IEINTVDRYQGRDKDIILISFVRSNSKNLVGELLRDWHRLNVALSRAKVKCIMFGS 1316
Query: 645 SSTICHNTFLARLLR 659
ST+ + ++ LL+
Sbjct: 1317 LSTLSSSNIVSHLLK 1331
Score = 127 (49.8 bits), Expect = 1.7e-24, Sum P(3) = 1.7e-24
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 255 IIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPAR 314
+I G PGTGKT + +I + + +++L+T+ T+ AVDN++ KL IVR+G+P +
Sbjct: 951 LILGMPGTGKTTTISSLIRSLLAKKKKILLTSFTHLAVDNILIKLKGCDSTIVRLGSPHK 1010
Query: 315 ISPAVASKSLGE 326
I P V L E
Sbjct: 1011 IHPLVKEFCLTE 1022
Score = 37 (18.1 bits), Expect = 1.7e-24, Sum P(3) = 1.7e-24
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 2 DLERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNA 41
DLE K + L++ +R LL ++R L F EEL A
Sbjct: 720 DLEFYKKWEKLLNQ-EER---LLLLKRGDVLTFDTEELEA 755
Score = 37 (18.1 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 275 AVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIV 307
A + + + P N A+D L D+ + +
Sbjct: 306 ATKASDATINEEPVNLALDKACNSLPDINSDFI 338
>UNIPROTKB|G4MK85 [details] [associations]
symbol:MGG_02491 "DNA replication ATP-dependent helicase
dna2" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR026851 InterPro:IPR014808 Pfam:PF08696
GO:GO:0004386 EMBL:CM001231 GO:GO:0017108 GO:GO:0043142
GO:GO:0033567 PANTHER:PTHR10887:SF14 KO:K10742 InterPro:IPR022765
Pfam:PF01930 RefSeq:XP_003709288.1 ProteinModelPortal:G4MK85
EnsemblFungi:MGG_02491T0 GeneID:2681588 KEGG:mgr:MGG_02491
Uniprot:G4MK85
Length = 1689
Score = 172 (65.6 bits), Expect = 2.7e-24, Sum P(4) = 2.7e-24
Identities = 48/139 (34%), Positives = 75/139 (53%)
Query: 514 DTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ 573
DTR+ + + + + G N EA++VV V SL+ GV + I V + Y +Q
Sbjct: 1430 DTRVAFVNTDALPDSREEAKGN-RIVNPVEAQLVVQLVESLMTLGVPANEIGVMTHYRSQ 1488
Query: 574 VQHLRERL---DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVG-FLGDSRRMN 629
+ L+ +L + +A VE+ T D FQGR+ + V++S+VRSN +G L D RR+N
Sbjct: 1489 LALLKHKLLRGKNTGDATAVEMHTADRFQGRDKEVVVLSLVRSNEACHIGDLLRDWRRIN 1548
Query: 630 VAITRACKHVAVVCDSSTI 648
VA TRA + V+ T+
Sbjct: 1549 VAFTRAKTKLLVIGSRETL 1567
Score = 162 (62.1 bits), Expect = 2.7e-24, Sum P(4) = 2.7e-24
Identities = 41/123 (33%), Positives = 68/123 (55%)
Query: 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAA 291
G++ + QKKA+ ++ K L++ G PGTGKT + II ++QG+ VL+T+ T++A
Sbjct: 1147 GESLNVDQKKAVEKVMSAKDYALVL-GMPGTGKTTTIAHIIRALIRQGKSVLLTSYTHSA 1205
Query: 292 VDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR 351
VDN++ KL + ++R+G PA++ P V + + + SF E DL
Sbjct: 1206 VDNILLKLKGDSIPVLRLGAPAKVHPEV--QEFATLAAQPMNSF-EEIRTAWHDLPVVAT 1262
Query: 352 QCL 354
CL
Sbjct: 1263 TCL 1265
Score = 96 (38.9 bits), Expect = 2.7e-24, Sum P(4) = 2.7e-24
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 418 ILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKE 477
+L GD QL P++ + +A +GG+ VSL + + H + L QYRM + + + +++
Sbjct: 1304 VLVGDHNQLPPLVQNEEARKGGLDVSLFKLLSDTHPDSVVN-LEHQYRMCEDVMALSNEL 1362
Query: 478 MYGGSLISSSTVASHLLVDTPF 499
+Y G L + +D PF
Sbjct: 1363 IYEGHLKCGTEELRLRKLDIPF 1384
Score = 38 (18.4 bits), Expect = 2.7e-24, Sum P(4) = 2.7e-24
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 144 ALESRHGDPTF 154
AL+S H DP F
Sbjct: 207 ALKSPHADPAF 217
Score = 37 (18.1 bits), Expect = 3.4e-24, Sum P(4) = 3.4e-24
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 77 VVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMV 111
V +T TG G +L VE + T GD +
Sbjct: 565 VYTTDTGRGCPEKILLLVEDTTKANVTVHLRGDWI 599
>SGD|S000001207 [details] [associations]
symbol:DNA2 "Tripartite DNA replication factor" species:4932
"Saccharomyces cerevisiae" [GO:0001302 "replicative cell aging"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0000784
"nuclear chromosome, telomeric region" evidence=IDA] [GO:0000723
"telomere maintenance" evidence=IMP] [GO:0006261 "DNA-dependent DNA
replication" evidence=IMP;IDA] [GO:0006273 "lagging strand
elongation" evidence=IGI;IMP] [GO:0006281 "DNA repair"
evidence=IEA;IGI;IMP] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IDA] [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0017108 "5'-flap endonuclease activity"
evidence=IEA;IDA] [GO:0033567 "DNA replication, Okazaki fragment
processing" evidence=IEA] [GO:0043142 "single-stranded
DNA-dependent ATPase activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=IDA]
[GO:0000706 "meiotic DNA double-strand break processing"
evidence=IGI] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR026851
SGD:S000001207 InterPro:IPR014808 Pfam:PF08696 GO:GO:0005524
GO:GO:0005737 GO:GO:0046872 GO:GO:0003677 EMBL:BK006934
GO:GO:0001302 GO:GO:0051539 GO:GO:0004003 eggNOG:COG1112
GO:GO:0000784 EMBL:U00027 GO:GO:0000723 GO:GO:0000706 GO:GO:0000733
GO:GO:0017108 GO:GO:0000014 GO:GO:0043139 GO:GO:0043142
GO:GO:0033567 PANTHER:PTHR10887:SF14 KO:K10742
GeneTree:ENSGT00550000074852 OrthoDB:EOG47H8Z4 PIR:S48904
RefSeq:NP_012034.1 ProteinModelPortal:P38859 SMR:P38859
DIP:DIP-2324N IntAct:P38859 MINT:MINT-620090 STRING:P38859
EnsemblFungi:YHR164C GeneID:856569 KEGG:sce:YHR164C CYGD:YHR164c
HOGENOM:HOG000112234 OMA:GLARYNI NextBio:982411
Genevestigator:P38859 GermOnline:YHR164C GO:GO:0035861
GO:GO:0006273 Uniprot:P38859
Length = 1522
Score = 220 (82.5 bits), Expect = 1.5e-23, Sum P(3) = 1.5e-23
Identities = 73/245 (29%), Positives = 119/245 (48%)
Query: 414 GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASW 473
G R I+ GD QL P++ + A GG+ SL + H +A +LT QYRM I +
Sbjct: 1203 GNRFIMVGDHYQLPPLVKNDAARLGGLEESLFKTFCEKHPESVA-ELTLQYRMCGDIVTL 1261
Query: 474 ASKEMYGGSLI--SSSTVASHLLVDTPFVKPTWITQCP---LLLLDTRLPYGSLSL---- 524
++ +Y L ++ A L + P + + L D P +
Sbjct: 1262 SNFLIYDNKLKCGNNEVFAQSLELPMPEALSRYRNESANSKQWLEDILEPTRKVVFLNYD 1321
Query: 525 GCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL 584
C + ++ + + N GEAE+ + V ++ +GV I V + Y AQ++ L+ ++ +
Sbjct: 1322 NCPDIIEQSEKDNITNHGEAELTLQCVEGMLLSGVPCEDIGVMTLYRAQLRLLK-KIFNK 1380
Query: 585 PEAAGVEVATIDSFQGREADAVIISMVRSNT-LGAVGFLGDSRRMNVAITRACKHVAVVC 643
G+E+ T D FQGR+ +IISMVR N+ L L + RR+NVA+TRA + ++
Sbjct: 1381 NVYDGLEILTADQFQGRDKKCIIISMVRRNSQLNGGALLKELRRVNVAMTRAKSKLIIIG 1440
Query: 644 DSSTI 648
STI
Sbjct: 1441 SKSTI 1445
Score = 149 (57.5 bits), Expect = 1.5e-23, Sum P(3) = 1.5e-23
Identities = 34/84 (40%), Positives = 57/84 (67%)
Query: 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVD 293
T + +QK+AI + + LI+ G PGTGKT ++ EII V +G+RVL+T+ T++AVD
Sbjct: 1051 TLNLNQKEAIDKVMRAEDYALIL-GMPGTGKTTVIAEIIKILVSEGKRVLLTSYTHSAVD 1109
Query: 294 NMVEKLSDVGLNIVRVGNPARISP 317
N++ KL + ++I+R+G ++ P
Sbjct: 1110 NILIKLRNTNISIMRLGMKHKVHP 1133
Score = 42 (19.8 bits), Expect = 1.5e-23, Sum P(3) = 1.5e-23
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 8 TIQSRLDEFTQRMSELLRIERDAEL 32
TI+ LD+ + +S+ LRI D+ L
Sbjct: 379 TIEQDLDKVEKMVSDDLRIATDSTL 403
Score = 37 (18.1 bits), Expect = 5.0e-23, Sum P(3) = 5.0e-23
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 179 NCEALMLLQKNGLHKRNPSIAAVVT 203
N + L+Q+NG + P A + T
Sbjct: 180 NADVNQLIQENGNEQVRPKPAEIST 204
>CGD|CAL0003335 [details] [associations]
symbol:SEN1 species:5476 "Candida albicans" [GO:0035649 "Nrd1
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0019904 "protein domain specific binding" evidence=IEA]
[GO:0016180 "snRNA processing" evidence=IEA] [GO:0031126 "snoRNA
3'-end processing" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
InterPro:IPR014016 InterPro:IPR024714 PROSITE:PS51198
CGD:CAL0003335 GO:GO:0005524 GO:GO:0005634 GO:GO:0008033
GO:GO:0004386 eggNOG:COG1112 EMBL:AACQ01000003 EMBL:AACQ01000004
GO:GO:0006364 GO:GO:0006369 GO:GO:0043144 GO:GO:0016180 KO:K10706
InterPro:IPR024481 PANTHER:PTHR10887:SF164 Pfam:PF12726
RefSeq:XP_723003.1 RefSeq:XP_723150.1 ProteinModelPortal:Q5ANG6
STRING:Q5ANG6 GeneID:3635255 GeneID:3635333 KEGG:cal:CaO19.13359
KEGG:cal:CaO19.5938 Uniprot:Q5ANG6
Length = 2018
Score = 244 (91.0 bits), Expect = 3.8e-23, Sum P(3) = 3.8e-23
Identities = 82/266 (30%), Positives = 123/266 (46%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
K+CI+ GD QL P +LS+ A SL R H + L QYRM+ I+ +
Sbjct: 1560 KKCIMVGDPNQLPPTVLSQAAASYNYEQSLFVRMQKNHPDSVYM-LDVQYRMHPMISKFP 1618
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLS-LGCEEHLDLA 533
S E Y L + L ++T +P W PL PY LG E +L
Sbjct: 1619 SSEFYNSKLKDGDGM---LELNT---RP-WHKDPPLT------PYRFFDILGKHEKNEL- 1664
Query: 534 GTGSFYNEGEAEIVVH---HVFSLICAGVSPSAIAVQSPYVAQVQHLRE---RLDDLPEA 587
T S +N EA + + + L+ I + SPY Q++ ++E R P
Sbjct: 1665 -TRSLFNTDEAIVALQLTDKLMQLLPQDKFSGKIGIISPYKEQIRKIKEVFVRKYGKPIL 1723
Query: 588 AGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSST 647
++ T+D FQG+E + +I+S VR++ G VGFL D RRMNVA+TRA + ++ + +
Sbjct: 1724 DEIDFNTVDGFQGQEKEIIIMSCVRASATGNVGFLSDVRRMNVALTRAKTTLWILGNKDS 1783
Query: 648 ICHNTFLARLLRHIRYFGRVKHAEPG 673
+ N +LL + A PG
Sbjct: 1784 LSRNEVWKKLLTDAGERNCITQAYPG 1809
Score = 86 (35.3 bits), Expect = 3.8e-23, Sum P(3) = 3.8e-23
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ 278
+DSQ +AI +G K +IQGPPGTGKT + I+ ++ Q
Sbjct: 1298 NDSQARAI-MGTFKSEGFSLIQGPPGTGKTKTILGIVGYSLSQ 1339
Score = 80 (33.2 bits), Expect = 3.8e-23, Sum P(3) = 3.8e-23
Identities = 26/89 (29%), Positives = 47/89 (52%)
Query: 281 RVLVTAPTNAAVDNMVEKLSD---------VGLNIVRVGNPARISPAVASKSLGEIVKSK 331
++L+ AP+NAAVD +V +L D + L +VR+G I+ +V +L E+V +
Sbjct: 1362 KILICAPSNAAVDELVLRLRDGVRNSSGEHMPLKVVRLGRSDAINSSVRDLTLEELVDKE 1421
Query: 332 LASFVAEFERKKSDLRKDLRQCLKD-DSL 359
L + E + +R + +C+ + D L
Sbjct: 1422 LQTKQTEVVIDPN-IRLEHTKCINERDEL 1449
Score = 47 (21.6 bits), Expect = 9.5e-20, Sum P(3) = 9.5e-20
Identities = 28/116 (24%), Positives = 52/116 (44%)
Query: 319 VASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRXXXXXXXXXXXXXX 378
+A++SL E ++L + +K+S+L K L + + S+A +
Sbjct: 1453 LATESLEEKEITELEEKIRAINKKRSELAKKLDEQREKASIANRTKEINRRNIQARIL-- 1510
Query: 379 XXXXXXXXSSAQVVLATNTGAADPLIRRLDT-FD--LVGKRCILAGDQC-QLAPVI 430
S AQV+ +T +G+A L+ L FD ++ + C QC +L+ +I
Sbjct: 1511 --------SEAQVLCSTLSGSAHDLVANLSVQFDQVIIDEAC-----QCLELSAII 1553
Score = 39 (18.8 bits), Expect = 5.5e-15, Sum P(2) = 5.5e-15
Identities = 41/187 (21%), Positives = 80/187 (42%)
Query: 142 SVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAV 201
S A+ S D T +L K ++ + + + D + + + +++ L KR A
Sbjct: 1402 SDAINSSVRDLTLEELVDKELQTKQTEVVIDPNIRLEHTKCIN--ERDELRKR----LAT 1455
Query: 202 VTLFGDKEDVTWLEENDLA---DWSEV--KLDGIMGKTFDDSQKKAIALGLNKKRPLLII 256
+L +++++T LEE A SE+ KLD K ++ K I + R L
Sbjct: 1456 ESL--EEKEITELEEKIRAINKKRSELAKKLDEQREKASIANRTKEINRRNIQARILSEA 1513
Query: 257 QGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARIS 316
Q T +G +++A Q ++V++ + + L + VG+P ++
Sbjct: 1514 QVLCST-LSGSAHDLVANLSVQFDQVIIDEACQCLELSAIIPLRYGCKKCIMVGDPNQLP 1572
Query: 317 PAVASKS 323
P V S++
Sbjct: 1573 PTVLSQA 1579
>UNIPROTKB|Q5ZKG3 [details] [associations]
symbol:DNA2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:9031 "Gallus gallus" [GO:0005524
"ATP binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0032508 "DNA
duplex unwinding" evidence=ISS] [GO:0000076 "DNA replication
checkpoint" evidence=ISS] [GO:0000729 "DNA double-strand break
processing" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0033567 "DNA replication, Okazaki fragment
processing" evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0004518
"nuclease activity" evidence=ISS] [GO:0043139 "5'-3' DNA helicase
activity" evidence=ISS] [GO:0043142 "single-stranded DNA-dependent
ATPase activity" evidence=ISS] [GO:0017108 "5'-flap endonuclease
activity" evidence=ISS] [GO:0045740 "positive regulation of DNA
replication" evidence=ISS] [GO:0006264 "mitochondrial DNA
replication" evidence=ISS] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=ISS] [GO:0006284 "base-excision repair"
evidence=ISS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=ISS] [GO:0005760
"gamma DNA polymerase complex" evidence=ISS] InterPro:IPR026851
InterPro:IPR014808 Pfam:PF08696 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0006284 GO:GO:0003677
GO:GO:0051539 GO:GO:0016890 eggNOG:COG1112 GO:GO:0045740
GO:GO:0000729 GO:GO:0017108 GO:GO:0000076 GO:GO:0043137
GO:GO:0043139 GO:GO:0043142 GO:GO:0006264 PANTHER:PTHR10887:SF14
EMBL:AJ720121 EMBL:AADN02028013 IPI:IPI00596013
RefSeq:NP_001006497.1 UniGene:Gga.42409 STRING:Q5ZKG3 GeneID:423688
KEGG:gga:423688 CTD:1763 HOGENOM:HOG000168456 HOVERGEN:HBG081456
KO:K10742 NextBio:20826122 Uniprot:Q5ZKG3
Length = 992
Score = 160 (61.4 bits), Expect = 3.8e-23, Sum P(3) = 3.8e-23
Identities = 51/123 (41%), Positives = 71/123 (57%)
Query: 557 AGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVR-SN- 614
AG PS I + SPY Q++ + + + L E VEV TID +QGR+ +I+S VR SN
Sbjct: 865 AGCRPSDIGIISPYRHQLKVITDLMARLKENR-VEVNTIDKYQGRDKSIIIVSFVRNSND 923
Query: 615 -TLGAVGFLGDSRRMNVAITRACKH--VAVVCDSSTICHNTFLARLLRHIRYFGRVKHAE 671
LGA+ L D RR+NVAITRA KH + V C S + L +LL H++ + +
Sbjct: 924 ENLGAL--LKDWRRLNVAITRA-KHKLIMVGCVPSLRRYPP-LEKLLCHLQSEAMIFNLP 979
Query: 672 PGS 674
PG+
Sbjct: 980 PGA 982
Score = 123 (48.4 bits), Expect = 3.8e-23, Sum P(3) = 3.8e-23
Identities = 34/108 (31%), Positives = 57/108 (52%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAV 292
K + QK+A+ L + LI+ G PGTGKT + ++ G VL+T+ T+ AV
Sbjct: 593 KGLNKPQKQAMKQVLLSRDYTLIV-GMPGTGKTTTICALVRILSACGFSVLLTSFTHTAV 651
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFE 340
DN++ KL+ + +R+G ++ P + + EI +SK V + E
Sbjct: 652 DNILLKLAKFKVGFLRLGRAQKVHPDIRKFTEEEICRSKSIKSVTDLE 699
Score = 121 (47.7 bits), Expect = 3.8e-23, Sum P(3) = 3.8e-23
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
KR +L GD QL P++ + +A + G+ SL +R V+ +LT QYRMN I S +
Sbjct: 749 KRFVLVGDHQQLPPLVQNSEARDLGMSESLFKRLEQNQNAVV--QLTVQYRMNSKIMSLS 806
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVK 501
+K +Y G L S S+ + P +K
Sbjct: 807 NKLVYEGKLECGSEKVSNATANLPNLK 833
>TAIR|locus:2018536 [details] [associations]
symbol:AT1G65780 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] EMBL:CP002684 GO:GO:0004386
KO:K10706 InterPro:IPR026852 PANTHER:PTHR10887:SF27 IPI:IPI00534309
RefSeq:NP_176754.1 UniGene:At.52386 ProteinModelPortal:F4IBK4
SMR:F4IBK4 PRIDE:F4IBK4 EnsemblPlants:AT1G65780.1 GeneID:842889
KEGG:ath:AT1G65780 Uniprot:F4IBK4
Length = 1065
Score = 268 (99.4 bits), Expect = 4.1e-23, Sum P(2) = 4.1e-23
Identities = 85/254 (33%), Positives = 135/254 (53%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
+ IL GD+ QL ++ S+ ALE G G SL ER A L G L QYRM+ +I+S+
Sbjct: 590 RHLILVGDERQLPAMVESQIALEAGFGRSLFERLALL--GHKKYMLNIQYRMHCSISSFP 647
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSL--GCEEHLDL 532
+KE+YG ++ D P V+ T+ L + PY +++ G EE+ +
Sbjct: 648 NKELYGKKIL-----------DAPTVRQRNYTK-QYLPGEMYGPYSFINIAYGREEYGEG 695
Query: 533 AGTGSFYNEGEAEIVVHHVFSLICAGVSPSA---IAVQSPYVAQVQHLRERLDD--LPEA 587
G S N E +V + +L+ + V SPY AQV ++E++ + + +A
Sbjct: 696 EGR-SLKNNVEVVVVAAIIANLLQVSEKTKTRINVGVISPYKAQVIAIQEKIQETSIGDA 754
Query: 588 AGV---EVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCD 644
G+ + T+D FQG E D +I+S VRSN +G VGFLG+ RR NV +TRA + ++ +
Sbjct: 755 GGLFSLRIRTVDGFQGGEEDIIIVSTVRSNGVGRVGFLGNRRRTNVLLTRARFCLWILGN 814
Query: 645 SSTICHNTFLARLL 658
+T+ ++ + R L
Sbjct: 815 EATLMNSKSVWRNL 828
Score = 85 (35.0 bits), Expect = 4.1e-23, Sum P(2) = 4.1e-23
Identities = 26/92 (28%), Positives = 45/92 (48%)
Query: 228 DGIMGKTF---DDSQKKAIALGLNKKR-----PLLIIQGPPGTGKTGLLKEIIARAVQQG 279
DG+ + F + SQ+ AI L+ +R + +I GPPGTGKT ++ +
Sbjct: 228 DGLAPRRFLKLNPSQEDAILNCLDVRRCYHANTVRLIWGPPGTGKTKTTSVLLFTLLNAK 287
Query: 280 ERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGN 311
R L PTN +V + ++ + +++GN
Sbjct: 288 CRTLTCGPTNVSVLEVASRVLKLVSGSLKIGN 319
Score = 38 (18.4 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 289 NAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRK 348
N A N V++ D G R GN + ++ ++ SF K S+LRK
Sbjct: 388 NLARANNVKR-KDTGSVFKRKGNEQN------ENIVEQVSDTRPQSFQDYLPEKFSELRK 440
Query: 349 DL 350
DL
Sbjct: 441 DL 442
>UNIPROTKB|F1PYQ4 [details] [associations]
symbol:DNA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] [GO:0033567 "DNA replication, Okazaki
fragment processing" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=IEA] InterPro:IPR026851
InterPro:IPR014808 Pfam:PF08696 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0017108 GO:GO:0043142 GO:GO:0033567 PANTHER:PTHR10887:SF14
GeneTree:ENSGT00550000074852 EMBL:AAEX03002775 EMBL:AAEX03002776
EMBL:AAEX03002777 Ensembl:ENSCAFT00000036654 Uniprot:F1PYQ4
Length = 997
Score = 158 (60.7 bits), Expect = 1.0e-22, Sum P(3) = 1.0e-22
Identities = 43/108 (39%), Positives = 62/108 (57%)
Query: 557 AGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTL 616
AG PS I + +PY Q++ + + L VEV T+D +QGR+ +++S VRSN
Sbjct: 872 AGCKPSDIGIIAPYRQQLKIINDLLFH-SSIRMVEVNTVDKYQGRDKSIILVSFVRSNKD 930
Query: 617 GAVG-FLGDSRRMNVAITRACKHVAVV--CDSSTICHNTFLARLLRHI 661
G +G L D RR+NVAITRA KH ++ C S + L +LL H+
Sbjct: 931 GPIGELLKDWRRLNVAITRA-KHKLILLGCVPSLNRYPP-LGKLLHHL 976
Score = 127 (49.8 bits), Expect = 1.0e-22, Sum P(3) = 1.0e-22
Identities = 32/87 (36%), Positives = 49/87 (56%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
+R +L GD QL P++L+R+A G+ SL +R V+ +LT QYRMN I S +
Sbjct: 752 QRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKNAVV--QLTVQYRMNSKIMSLS 809
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVK 501
+K Y G L S ++ +V+ P +K
Sbjct: 810 NKLTYDGKLECGSDKVANAVVNLPNLK 836
Score = 115 (45.5 bits), Expect = 1.0e-22, Sum P(3) = 1.0e-22
Identities = 35/122 (28%), Positives = 61/122 (50%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAV 292
K + Q++A+ L K LI+ G PGTGKT + ++ G VL+T+ T++AV
Sbjct: 596 KGLNKPQRQAMKKVLLSKDYTLIV-GMPGTGKTTTICTLVRILYTCGFSVLLTSYTHSAV 654
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQ 352
DN++ KL+ + +R+G ++ + + EI +SK +A E + R
Sbjct: 655 DNILLKLAKFKIGFLRLGRTQKVHQDIQKFTEEEICRSKPIKSLALLEELYNSHRIVATT 714
Query: 353 CL 354
C+
Sbjct: 715 CM 716
>GENEDB_PFALCIPARUM|MAL7P1.12 [details] [associations]
symbol:MAL7P1.12 "erythrocyte
membrane-associated antigen" species:5833 "Plasmodium falciparum"
[GO:0016020 "membrane" evidence=ISS] GO:GO:0016020
InterPro:IPR014001 SMART:SM00487 EMBL:AL844506
RefSeq:XP_001348968.1 ProteinModelPortal:Q8IC35 IntAct:Q8IC35
MINT:MINT-1611439 EnsemblProtists:MAL7P1.12:mRNA GeneID:2655186
KEGG:pfa:MAL7P1.12 EuPathDB:PlasmoDB:PF3D7_0703500
HOGENOM:HOG000283891 ProtClustDB:CLSZ2433351 Uniprot:Q8IC35
Length = 2283
Score = 234 (87.4 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 76/238 (31%), Positives = 121/238 (50%)
Query: 418 ILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKE 477
+L GD QL P I+S A++ G+ SLLER + L TQ RM+ +I + +
Sbjct: 1948 VLIGDHKQLPPTIISPDAIKLGLDKSLLERFVMAKIAPVHL-LNTQRRMHLSICVFPNFH 2006
Query: 478 MYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGS 537
Y L +++ + + F+ P +C L +D + G E + GT
Sbjct: 2007 FYDNKLKTANVTEENRPIIKGFLWPN--PKCRLAFIDVSI--GKPGSKFE---NAYGTSK 2059
Query: 538 FYNEGEAEIVVHHVFSLICAG-VSPSAIAVQSPYVAQVQHLRERLDDL--PEAAG-VEVA 593
F N E E ++ + S+I G VS I + + Y AQ L++ + D EA+ +E+
Sbjct: 2060 F-NLYEIEPLITVLKSIINEGCVSVDEIGILTAYDAQKMKLKKAVQDAFSYEASHRIEID 2118
Query: 594 TIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHN 651
+ID FQG+E D ++ S VRSN +GFL D+RR+NV +TRA + V + D T+ ++
Sbjct: 2119 SIDGFQGKEKDLILFSAVRSNANNELGFLRDARRLNVMLTRAKRGVILFGDQFTLAND 2176
Score = 124 (48.7 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 31/77 (40%), Positives = 45/77 (58%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG--ERVLVTAPTNAAVD 293
+DSQK A L ++ L ++QGPPGTGKT + II +Q +++L A +N A +
Sbjct: 1778 NDSQKLACLSALTRR--LTLVQGPPGTGKTHVACAIIDSWHKQNSNKKILAVADSNVAAN 1835
Query: 294 NMVEKLSDVGLNIVRVG 310
N+VE L + VRVG
Sbjct: 1836 NLVEGLKKRNIQAVRVG 1852
Score = 44 (20.5 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDL 350
VG + S A + +VK+ L +++ +RK + +DL
Sbjct: 1272 VGYGSTKSLAKCEAAYDMLVKNNLIEYISSTDRKNAQFIRDL 1313
Score = 43 (20.2 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 96 GNHR-LPPTTLSP 107
G+H+ LPPT +SP
Sbjct: 1951 GDHKQLPPTIISP 1963
>UNIPROTKB|Q8IC35 [details] [associations]
symbol:MAL7P1.12 "Erythrocyte membrane-associated antigen"
species:36329 "Plasmodium falciparum 3D7" [GO:0016020 "membrane"
evidence=ISS] GO:GO:0016020 InterPro:IPR014001 SMART:SM00487
EMBL:AL844506 RefSeq:XP_001348968.1 ProteinModelPortal:Q8IC35
IntAct:Q8IC35 MINT:MINT-1611439 EnsemblProtists:MAL7P1.12:mRNA
GeneID:2655186 KEGG:pfa:MAL7P1.12 EuPathDB:PlasmoDB:PF3D7_0703500
HOGENOM:HOG000283891 ProtClustDB:CLSZ2433351 Uniprot:Q8IC35
Length = 2283
Score = 234 (87.4 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 76/238 (31%), Positives = 121/238 (50%)
Query: 418 ILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKE 477
+L GD QL P I+S A++ G+ SLLER + L TQ RM+ +I + +
Sbjct: 1948 VLIGDHKQLPPTIISPDAIKLGLDKSLLERFVMAKIAPVHL-LNTQRRMHLSICVFPNFH 2006
Query: 478 MYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGS 537
Y L +++ + + F+ P +C L +D + G E + GT
Sbjct: 2007 FYDNKLKTANVTEENRPIIKGFLWPN--PKCRLAFIDVSI--GKPGSKFE---NAYGTSK 2059
Query: 538 FYNEGEAEIVVHHVFSLICAG-VSPSAIAVQSPYVAQVQHLRERLDDL--PEAAG-VEVA 593
F N E E ++ + S+I G VS I + + Y AQ L++ + D EA+ +E+
Sbjct: 2060 F-NLYEIEPLITVLKSIINEGCVSVDEIGILTAYDAQKMKLKKAVQDAFSYEASHRIEID 2118
Query: 594 TIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHN 651
+ID FQG+E D ++ S VRSN +GFL D+RR+NV +TRA + V + D T+ ++
Sbjct: 2119 SIDGFQGKEKDLILFSAVRSNANNELGFLRDARRLNVMLTRAKRGVILFGDQFTLAND 2176
Score = 124 (48.7 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 31/77 (40%), Positives = 45/77 (58%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG--ERVLVTAPTNAAVD 293
+DSQK A L ++ L ++QGPPGTGKT + II +Q +++L A +N A +
Sbjct: 1778 NDSQKLACLSALTRR--LTLVQGPPGTGKTHVACAIIDSWHKQNSNKKILAVADSNVAAN 1835
Query: 294 NMVEKLSDVGLNIVRVG 310
N+VE L + VRVG
Sbjct: 1836 NLVEGLKKRNIQAVRVG 1852
Score = 44 (20.5 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDL 350
VG + S A + +VK+ L +++ +RK + +DL
Sbjct: 1272 VGYGSTKSLAKCEAAYDMLVKNNLIEYISSTDRKNAQFIRDL 1313
Score = 43 (20.2 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 96 GNHR-LPPTTLSP 107
G+H+ LPPT +SP
Sbjct: 1951 GDHKQLPPTIISP 1963
>DICTYBASE|DDB_G0268914 [details] [associations]
symbol:DDB_G0268914 species:44689 "Dictyostelium
discoideum" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR003593
SMART:SM00382 dictyBase:DDB_G0268914 GO:GO:0005524
EMBL:AAFI02000004 GO:GO:0017111 eggNOG:COG1112 RefSeq:XP_647058.1
ProteinModelPortal:Q55EG2 EnsemblProtists:DDB0190122 GeneID:8616757
KEGG:ddi:DDB_G0268914 InParanoid:Q55EG2 OMA:ANCRVEN Uniprot:Q55EG2
Length = 4540
Score = 218 (81.8 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 71/256 (27%), Positives = 119/256 (46%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
K+ IL GD QL P I S++++ G+G+SL ER L + + + L QYRM+ I+ +
Sbjct: 3721 KKLILVGDPVQLPPTIFSKESIHCGLGISLFER---LSKVLPVSMLNVQYRMHPLISKFP 3777
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSL-GCEEHLDLA 533
S + Y L V S + L YG++ + +
Sbjct: 3778 SSQFYHDILKDGDNVVS--------------SDAYSLRFHENQDYGAIRFFDVTDSREER 3823
Query: 534 GTGSFYNEGEAEIVVHHVFSLIC--AGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVE 591
G S N+ E +V + L + + +PY Q + + + L + +E
Sbjct: 3824 GKTSIKNQLEITMVFTLIKKLTQDHPETKQYSFGIVTPYKLQRKEIEDAYKQLNLSLNIE 3883
Query: 592 VATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHN 651
+ TIDSFQG E D +I+S VR+ + +GFL D RR+NV+ITRA + ++ +++ + +
Sbjct: 3884 IKTIDSFQGSEKDIMIMSCVRNES---IGFLSDRRRINVSITRAKYGLFIIGNATLLKLD 3940
Query: 652 TFLARLLRHIRYFGRV 667
L+ H+ RV
Sbjct: 3941 RTWGELIDHLISIDRV 3956
Score = 145 (56.1 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 58/217 (26%), Positives = 97/217 (44%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIA--RAVQQGERVLVTAPTNA 290
+T ++SQ AI L + +IQGPPGTGKT + +I+ A+ ++LV P++A
Sbjct: 3554 QTLNESQLAAINESLVHSS-ITLIQGPPGTGKTHTITSLISIILAINPDFKILVCGPSHA 3612
Query: 291 AVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDL 350
AVD + +++ GL R G + P + L + ++ + + F R+ D +K +
Sbjct: 3613 AVDEVAKRVIIKGLLNDR-GE--KYIPTMVRIGLKDNIQDPIVHDICVFNRRL-DEKKMI 3668
Query: 351 RQCLKDDSLAAGIRXXXXXXXXXXXXXXXXXXXXXXSSAQVVLATNTGAADPLIRRLDTF 410
L+ S+ + Q + T PL L
Sbjct: 3669 ---LEHSSIC--FSTLSASGSNLVQSSFKPNVVIVDEATQ---SCETSCIIPL--SLGAK 3718
Query: 411 DLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLER 447
+ K+ IL GD QL P I S++++ G+G+SL ER
Sbjct: 3719 SM--KKLILVGDPVQLPPTIFSKESIHCGLGISLFER 3753
>ZFIN|ZDB-GENE-090313-71 [details] [associations]
symbol:dna2 "DNA replication helicase 2 homolog
(yeast)" species:7955 "Danio rerio" [GO:0017108 "5'-flap
endonuclease activity" evidence=IEA;ISS] [GO:0033567 "DNA
replication, Okazaki fragment processing" evidence=IEA] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=IEA]
[GO:0006264 "mitochondrial DNA replication" evidence=ISS]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=ISS]
[GO:0016890 "site-specific endodeoxyribonuclease activity, specific
for altered base" evidence=ISS] [GO:0005760 "gamma DNA polymerase
complex" evidence=ISS] [GO:0006284 "base-excision repair"
evidence=ISS] [GO:0045740 "positive regulation of DNA replication"
evidence=ISS] InterPro:IPR026851 InterPro:IPR014808 Pfam:PF08696
ZFIN:ZDB-GENE-090313-71 GO:GO:0017108 GO:GO:0043142 GO:GO:0033567
PANTHER:PTHR10887:SF14 GeneTree:ENSGT00550000074852 EMBL:BX530068
IPI:IPI00901582 Ensembl:ENSDART00000109798 ArrayExpress:F1Q892
Bgee:F1Q892 Uniprot:F1Q892
Length = 1378
Score = 231 (86.4 bits), Expect = 6.5e-22, Sum P(3) = 6.5e-22
Identities = 87/271 (32%), Positives = 134/271 (49%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
+R +L GD QL P++ + +A G+ SL +R + V+ +L QYRMN AI S +
Sbjct: 1097 QRFVLVGDHQQLPPIVQNAEARSLGMDESLFKRLEHHRDAVV--QLNVQYRMNSAIMSLS 1154
Query: 475 SKEMYGGSLISSSTVASHLLVDTP-----------FV-KP---TWITQC-----PLLLLD 514
+ MY G L S ++ ++ P +V +P W+ P+ LD
Sbjct: 1155 NALMYEGRLECGSEKTANAVLQLPSRAQAEEELELYVCQPQYSAWVQAALEPNSPVCFLD 1214
Query: 515 TRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV 574
T + E ++ +G N EA +V V L+ AG I V +PY Q+
Sbjct: 1215 TS------EVPAPETVEKSGIS---NHTEAVLVQGLVTLLLKAGCRACDIGVIAPYRQQL 1265
Query: 575 QHLRERLD-DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVG-FLGDSRRMNVAI 632
+ + L D +A +EV T+D +QGR+ +I+S VRSN G +G L D RR+NVAI
Sbjct: 1266 KVISSLLQGDAFKA--LEVNTVDKYQGRDKSVIIVSFVRSNAEGNLGELLQDWRRLNVAI 1323
Query: 633 TRACKHVAVVCDSS-TICHNTFLARLLRHIR 662
TRA KH ++ S+ T+ L +LL H++
Sbjct: 1324 TRA-KHKLLMLGSAPTLRRYAPLEKLLCHLQ 1353
Score = 120 (47.3 bits), Expect = 6.5e-22, Sum P(3) = 6.5e-22
Identities = 45/166 (27%), Positives = 80/166 (48%)
Query: 151 DPTFSKLFGKSV-RIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKE 209
D SK +V R+D+ +G T+ N ML++ +R + ++ F +
Sbjct: 866 DKNLSKYSSNTVFRLDQDEGAGGLSTHLGNLS--MLMENTPTSER---LRELIVEFRPPQ 920
Query: 210 DVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLK 269
+ L D ++ + I+ K + QK+A+ L K LI+ G PGTGKT +
Sbjct: 921 FIDSLSSVLPRDAKDI-VSNIL-KGLNKPQKQAMKKVLLSKDYTLIV-GMPGTGKTTTIC 977
Query: 270 EIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARI 315
++ G VL+T+ T++AVDN++ KL + +R+G P ++
Sbjct: 978 TLVRILHACGFSVLLTSYTHSAVDNILLKLKRFKIGFLRLGRPQKV 1023
Score = 42 (19.8 bits), Expect = 6.5e-22, Sum P(3) = 6.5e-22
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 63 RAPQELCDTICNLFVVSTSTGLGGMHLVLF 92
R P E C FV S S L +HL F
Sbjct: 730 RDPVEKCSENPQAFVQSESEHLSQVHLQYF 759
>UNIPROTKB|F1NWZ8 [details] [associations]
symbol:DNA2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:9031 "Gallus gallus" [GO:0000076
"DNA replication checkpoint" evidence=IEA] [GO:0000729 "DNA
double-strand break processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005760 "gamma DNA polymerase complex"
evidence=IEA] [GO:0006264 "mitochondrial DNA replication"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0016890 "site-specific endodeoxyribonuclease activity, specific
for altered base" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] [GO:0042645 "mitochondrial nucleoid"
evidence=IEA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IEA] [GO:0043139 "5'-3' DNA helicase activity"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] [GO:0043504 "mitochondrial DNA repair"
evidence=IEA] [GO:0045740 "positive regulation of DNA replication"
evidence=IEA] InterPro:IPR026851 InterPro:IPR014808 Pfam:PF08696
GO:GO:0005634 GO:GO:0006284 GO:GO:0042645 GO:GO:0016890
GO:GO:0045740 GO:GO:0017108 GO:GO:0043137 GO:GO:0005760
GO:GO:0043142 GO:GO:0043504 GO:GO:0006264 PANTHER:PTHR10887:SF14
EMBL:AADN02028013 GeneTree:ENSGT00550000074852 OMA:EHESLCH
IPI:IPI00584167 Ensembl:ENSGALT00000006429 ArrayExpress:F1NWZ8
Uniprot:F1NWZ8
Length = 1009
Score = 210 (79.0 bits), Expect = 8.4e-21, Sum P(2) = 8.4e-21
Identities = 72/219 (32%), Positives = 109/219 (49%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
KR +L GD QL P++ + +A + G+ SL +R V+ +LT QYRMN I S +
Sbjct: 798 KRFVLVGDHQQLPPLVQNSEARDLGMSESLFKRLEQNQNAVV--QLTVQYRMNSKIMSLS 855
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVK----------PTWITQCPLLLLDTRLPY-GSLS 523
+K +Y G L S S+ + P +K TW+ + +L D + + +
Sbjct: 856 NKLVYEGKLECGSEKVSNATANLPNLKMLKLEFADASKTWLKE--VLEPDKPVCFLNTEK 913
Query: 524 LGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDD 583
+ EH + G N EA++V I AG PS I + SPY Q++ + + +
Sbjct: 914 VPAPEHTEKGGV---CNVTEAKLVFFLTTLFIKAGCRPSDIGIISPYRHQLKVITDLMAR 970
Query: 584 LPEAAGVEVATIDSFQGREADAVIISMVR-SN--TLGAV 619
L E VEV TID +QGR+ +I+S VR SN LGA+
Sbjct: 971 LKENR-VEVNTIDKYQGRDKSIIIVSFVRNSNDENLGAL 1008
Score = 123 (48.4 bits), Expect = 8.4e-21, Sum P(2) = 8.4e-21
Identities = 34/111 (30%), Positives = 59/111 (53%)
Query: 230 IMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTN 289
I+ + + QK+A+ L + LI+ G PGTGKT + ++ G VL+T+ T+
Sbjct: 639 ILKGSLNKPQKQAMKQVLLSRDYTLIV-GMPGTGKTTTICALVRILSACGFSVLLTSFTH 697
Query: 290 AAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFE 340
AVDN++ KL+ + +R+G ++ P + + EI +SK V + E
Sbjct: 698 TAVDNILLKLAKFKVGFLRLGRAQKVHPDIRKFTEEEICRSKSIKSVTDLE 748
>UNIPROTKB|E1BQD2 [details] [associations]
symbol:C4H4orf21 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR010666 Pfam:PF06839 GO:GO:0008270
GeneTree:ENSGT00550000074391 OMA:HKLGTNK EMBL:AADN02009328
IPI:IPI00577016 Ensembl:ENSGALT00000019715 Uniprot:E1BQD2
Length = 913
Score = 199 (75.1 bits), Expect = 9.3e-21, Sum P(3) = 9.3e-21
Identities = 48/142 (33%), Positives = 78/142 (54%)
Query: 537 SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAA----GVEV 592
SFYN E V + +LI +G+ SA+ V + Y +Q+ L+ L + A V+V
Sbjct: 749 SFYNMAEVHFTVKFIQALIASGIDGSAVGVITFYKSQMYKLQNLLRSIHSEAFPVKAVQV 808
Query: 593 ATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT 652
+T+D+FQG E + V++S VR+ GF +RMNVA+TRA +H+ +V + + + N
Sbjct: 809 STVDAFQGAEKEIVVLSCVRTRQ---TGFTDSEKRMNVALTRAKRHLLIVGNLACLSKNR 865
Query: 653 FLARLLRHIRYFGRVKHAEPGS 674
R++ H + GR + GS
Sbjct: 866 LYERVINHCK--GRENGLQHGS 885
Score = 93 (37.8 bits), Expect = 9.3e-21, Sum P(3) = 9.3e-21
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 415 KRCILAGDQCQLAPVILSRKAL-EGGIGVSLLERAATL-HEGVLATKLTTQYRMNDAIAS 472
++ +L GD QL P I +++ E G+ +L +R + H+ +L L TQYR + AI++
Sbjct: 647 EKLVLVGDPKQLPPTIQGSESIHEKGLEQTLFDRLCLMGHKTIL---LRTQYRCHPAISA 703
Query: 473 WASKEMYGGSLI 484
A++ Y G+LI
Sbjct: 704 IANELFYEGNLI 715
Score = 85 (35.0 bits), Expect = 9.3e-21, Sum P(3) = 9.3e-21
Identities = 29/87 (33%), Positives = 45/87 (51%)
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGE-------------RVLVTAPTNAAVDNMVEK 298
P+ II G G GK+ LL +I VQ E ++L+ + TN AVD ++
Sbjct: 466 PITIIHGVFGAGKSFLLSVVILFLVQLFESSEAKEGAELAPWKLLIASSTNVAVDRILLC 525
Query: 299 LSDVGL-NIVRVGNPARISPAVASKSL 324
L D+G + +RVG+ +I+ A+ SL
Sbjct: 526 LLDLGFEDFIRVGSIRKITKAILPYSL 552
Score = 37 (18.1 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 433 RKALEGGIGVSLLERAATLHEGVLATKLTTQYRMND 468
+ AL + + L E + LH +L +++ + D
Sbjct: 122 KAALTEHLNIMLFELSQRLHSALLKVDISSYTSLED 157
>UNIPROTKB|G4NIZ8 [details] [associations]
symbol:MGG_02784 "DNA-binding protein SMUBP-2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR024714 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0008033 GO:GO:0004386 EMBL:CM001237
GO:GO:0006364 GO:GO:0006369 GO:GO:0043144 GO:GO:0016180 KO:K10706
InterPro:IPR024481 PANTHER:PTHR10887:SF164 Pfam:PF12726
RefSeq:XP_003720957.1 EnsemblFungi:MGG_02784T0 GeneID:2682672
KEGG:mgr:MGG_02784 Uniprot:G4NIZ8
Length = 2037
Score = 247 (92.0 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 83/252 (32%), Positives = 120/252 (47%)
Query: 416 RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWAS 475
+CIL GD QL P +LS+ A G SL R H G + L QYRM+ I+ + S
Sbjct: 1600 KCILVGDPKQLPPTVLSQSAARYGYDQSLFVRMQQNHPGKVHL-LDCQYRMHPEISLYPS 1658
Query: 476 KEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSL-GCEEHLDLAG 534
KE Y G L S +A L P W PLL PY + G +E G
Sbjct: 1659 KEFYEGLLADGSDMAK--LRQQP-----WHDN-PLLG-----PYRFFDVEGIQER-GSRG 1704
Query: 535 TGSFYNEGEAEIVVHHVFSLICAGVSPSA-----IAVQSPYVAQVQHLRERLDDL-PEAA 588
S N E + + +++ A + S I + +PY AQ+ LR++ + E
Sbjct: 1705 Q-SLVNTNEINVAIQ-IYTKFQADYASSIDMKGKIGIITPYKAQLFALRQKFQERWGEGV 1762
Query: 589 --GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSS 646
+E T D+FQGRE + +I S VR++ G +GF+ D RRMNV +TRA + ++ DS
Sbjct: 1763 LEDIEFNTTDAFQGRECEIIIFSCVRASPTGGIGFMTDIRRMNVGLTRARSSLWILGDSR 1822
Query: 647 TICHNTFLARLL 658
+ F +L+
Sbjct: 1823 ALRQGEFWNKLI 1834
Score = 89 (36.4 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 30/101 (29%), Positives = 49/101 (48%)
Query: 246 GLNKKRPLLIIQGPPGTGKTGL-----LKEIIARAVQQGERVLVTAPTNAAVDNMVEKLS 300
G K + ++ + G TGK +K +++LV AP+NAAVD +V +L
Sbjct: 1352 GTGKTKTIIAMVGALLTGKISRAPPTRIKPANGADEPMAQKLLVCAPSNAAVDELVLRLK 1411
Query: 301 ----DVG-----LNIVRVGNPARISPAVASKSLGEIVKSKL 332
D +N++R+G I+ AV +L E+VK K+
Sbjct: 1412 AGIKDTNGNTHKINVLRLGRSDAINAAVRDVTLDELVKEKM 1452
Score = 69 (29.3 bits), Expect = 1.7e-17, Sum P(4) = 1.7e-17
Identities = 23/51 (45%), Positives = 29/51 (56%)
Query: 255 IIQGPPGTGKTGLLKEIIAR--AVQQGE--RVLVTA--PTNAAVDNMVEKL 299
++QGPPGTGKT K IIA A+ G+ R T P N A + M +KL
Sbjct: 1346 LVQGPPGTGKT---KTIIAMVGALLTGKISRAPPTRIKPANGADEPMAQKL 1393
Score = 47 (21.6 bits), Expect = 9.3e-16, Sum P(3) = 9.3e-16
Identities = 14/59 (23%), Positives = 27/59 (45%)
Query: 286 APTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKS 344
A + +D +V++ D LN+ GN + GEI K ++A+ E+ ++
Sbjct: 1438 AVRDVTLDELVKEKMDAALNVNGSGNSGPTDREKLHQEAGEI-KVRVAALREALEQARA 1495
Score = 44 (20.5 bits), Expect = 1.7e-17, Sum P(4) = 1.7e-17
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 230 IMGKTFDDSQKKAIALGLNKKRPLLIIQGP 259
IM + D+ K I GL K LL GP
Sbjct: 133 IMAQKLDEFDKNRIDRGLLKAESLLKEHGP 162
Score = 39 (18.8 bits), Expect = 1.7e-17, Sum P(4) = 1.7e-17
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 307 VRVGNPARISPAVASKS 323
+ VG+P ++ P V S+S
Sbjct: 1602 ILVGDPKQLPPTVLSQS 1618
>DICTYBASE|DDB_G0289529 [details] [associations]
symbol:DDB_G0289529 species:44689 "Dictyostelium
discoideum" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR002934
InterPro:IPR003593 Pfam:PF01909 SMART:SM00382
dictyBase:DDB_G0289529 GO:GO:0005524 EMBL:AAFI02000141
GO:GO:0017111 eggNOG:COG1112 GO:GO:0016779 RefSeq:XP_636183.1
ProteinModelPortal:Q54HF4 EnsemblProtists:DDB0219440 GeneID:8627170
KEGG:ddi:DDB_G0289529 InParanoid:Q54HF4 ProtClustDB:CLSZ2429765
Uniprot:Q54HF4
Length = 1677
Score = 218 (81.8 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
Identities = 73/250 (29%), Positives = 117/250 (46%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
K+ IL GD QL P I S++ + G+ +SL ER A + + L TQYRM+ + +
Sbjct: 1354 KKLILVGDPVQLPPTIFSKQGADCGLKISLFERLA---KSIDVQFLNTQYRMHPVTSKFI 1410
Query: 475 SKEMYGGSLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLA 533
S+E Y G+L V+ + F P++ P+ D LP + + +
Sbjct: 1411 SEEFYNGTLKDGENVSIDSYNNCKFHFDPSF---GPMKFFD--LPKSNQKVIKK------ 1459
Query: 534 GTGSFYNEGEAEIVVHHVFSLI--CAGVSPSAIAVQSPYVAQVQHLRERLDDLPEA-AGV 590
S N+ E + V + LI + + +PY Q+ ++E+L+ +
Sbjct: 1460 ---SIMNQDEIDKVFTLIKELIEKYPECKKLSFGIITPYKLQMNQIKEQLNRSEHHNLNI 1516
Query: 591 EVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICH 650
V+TID QG E D +I+S VRS +GFL D RR+NVA+TRA + V+ +
Sbjct: 1517 SVSTIDGVQGSEKDIIIMSCVRSIEKFGIGFLSDRRRINVALTRAKLGLYVIGTYKVLAK 1576
Query: 651 NTFLARLLRH 660
+ + L H
Sbjct: 1577 DNTWEKFLIH 1586
Score = 115 (45.5 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
Identities = 35/109 (32%), Positives = 59/109 (54%)
Query: 227 LDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIA--RAVQQGERVLV 284
L+ I + ++SQ AI L + + +IQGPPGTGKT + +++ A+ + ++LV
Sbjct: 1185 LETICKEKLNESQLNAIKSSLVESG-ITLIQGPPGTGKTTTINYLLSVLLAIDKKFKILV 1243
Query: 285 TAPTNAAVDNMVEKL------SDVGL---NIVRVGNPARISPAVASKSL 324
P++A+VD + ++ SD + N+VR G +ISP SL
Sbjct: 1244 CGPSHASVDEVAKRCLKNLLNSDGQIFKPNMVRTGRKEKISPECQKISL 1292
Score = 50 (22.7 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 315 ISPAVASKSLGEIVKSKLASFVAEFERKKSDLR----KDLRQCLKDDSL 359
+ P V +++ +++ + EF ++ +R KD+ + KD SL
Sbjct: 625 LDPFVTDRNIASSIQNSFFRIIVEFIHMENSIRLKKFKDINELFKDISL 673
Score = 43 (20.2 bits), Expect = 8.7e-13, Sum P(2) = 8.7e-13
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 282 VLVTAPTNAAVDNMVEKLSDVGLN-IVRVGNPARISPAVASK 322
VL+ T ++ + LS + ++ VG+P ++ P + SK
Sbjct: 1331 VLIDESTQSSEPTSIIPLSLGSVKKLILVGDPVQLPPTIFSK 1372
Score = 41 (19.5 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 5/16 (31%), Positives = 14/16 (87%)
Query: 396 NTGAADPLIRRLDTFD 411
N+ + +P+++R+D+F+
Sbjct: 534 NSYSTNPILKRIDSFE 549
>DICTYBASE|DDB_G0285243 [details] [associations]
symbol:DDB_G0285243 "putative splicing endonuclease"
species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
dictyBase:DDB_G0285243 EMBL:AAFI02000076 KO:K10706
InterPro:IPR024481 Pfam:PF12726 RefSeq:XP_002649136.1
ProteinModelPortal:C7G036 EnsemblProtists:DDB0252844 GeneID:8625002
KEGG:ddi:DDB_G0285243 OMA:DSINMIF Uniprot:C7G036
Length = 2069
Score = 234 (87.4 bits), Expect = 2.9e-20, Sum P(3) = 2.9e-20
Identities = 78/250 (31%), Positives = 118/250 (47%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
K+CIL GD QL P +S+ A + +SL +R ++ G+ T L TQYRM+ I+ +
Sbjct: 1632 KKCILVGDPQQLPPTTISKVATKFQYEISLFQRL--MNCGMAPTVLKTQYRMHPMISKFP 1689
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAG 534
SK Y G L V + + + PL+ D +G + +
Sbjct: 1690 SKIFYRGELEDGKNVREY---KQDYYNDSASRFGPLVFYDLFDKHGEVR---------SS 1737
Query: 535 TGSFYNEGEAEIVVHHVFSLIC--AGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEV 592
S N E ++ V LI I V +PY +Q L + VEV
Sbjct: 1738 FFSLRNPTEVKLAKLIVDQLISNYPNTKDLEIGVITPYKSQSVDL---FNAFKGYQNVEV 1794
Query: 593 ATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT 652
+TID FQG+E D VI S VR+++ ++GFL D RRMNV +TRA + ++ +SS + +N
Sbjct: 1795 STIDGFQGKEKDFVIFSSVRAHSGHSIGFLSDIRRMNVGLTRAKYSMVILGNSSLLSNND 1854
Query: 653 FLARLLRHIR 662
L+ +R
Sbjct: 1855 DWGNLVNDLR 1864
Score = 106 (42.4 bits), Expect = 2.9e-20, Sum P(3) = 2.9e-20
Identities = 36/120 (30%), Positives = 62/120 (51%)
Query: 213 WLEENDLADWSEVKL-DGIMGK---TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLL 268
++ ND + S K+ D + K + ++SQ AIA L ++QGPPGTGKT +
Sbjct: 1347 YINSNDSSS-STFKIPDKLFQKLRSSLNESQLSAIASTLKNLGGFSLLQGPPGTGKTKTI 1405
Query: 269 KEIIA------RAVQQGE---RVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAV 319
+++ +++ ++LV AP+NAAVD + ++ GL I + GN + P +
Sbjct: 1406 LSLLSVFTTVLTNIEKSHSDPKILVCAPSNAAVDEIALRIKKDGL-IDKNGN--KFKPVI 1462
Score = 78 (32.5 bits), Expect = 2.1e-17, Sum P(3) = 2.1e-17
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 281 RVLVTAPTNAAVDNMVEKLSDVGL---N-------IVRVGNPARISPAVASKSLGEIVKS 330
++LV AP+NAAVD + ++ GL N I R+GN + I P+V S+ ++
Sbjct: 1427 KILVCAPSNAAVDEIALRIKKDGLIDKNGNKFKPVICRIGNQSHIHPSVQDISVESLILG 1486
Query: 331 KLA---SFVAEFERKKSDLR 347
+ S +A ++KK + R
Sbjct: 1487 EYKDKNSAIANEDQKKENTR 1506
Score = 43 (20.2 bits), Expect = 2.9e-20, Sum P(3) = 2.9e-20
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 145 LESRHGDPTFSKLFGKSVRIDRI 167
L + DP FGK R DRI
Sbjct: 1242 LNEAYRDPNLFSAFGKVERKDRI 1264
Score = 37 (18.1 bits), Expect = 3.2e-13, Sum P(3) = 3.2e-13
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 275 AVQQGERVLVTAPTNAA-VDNMVEKLSDVGLNIVRVGNPARISPAVASK 322
A + + V+V A + ++ DV I+ VG+P ++ P SK
Sbjct: 1603 ATKNFDLVIVDEAAQAVELSTLIPLRHDVKKCIL-VGDPQQLPPTTISK 1650
>CGD|CAL0002159 [details] [associations]
symbol:DNA2 species:5476 "Candida albicans" [GO:0000784
"nuclear chromosome, telomeric region" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031860 "telomeric 3' overhang
formation" evidence=IEA] [GO:0000733 "DNA strand renaturation"
evidence=IEA] [GO:0000706 "meiotic DNA double-strand break
processing" evidence=IEA] [GO:0001302 "replicative cell aging"
evidence=IEA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0017108 "5'-flap endonuclease activity" evidence=IEA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] InterPro:IPR026851 InterPro:IPR014808
CGD:CAL0002159 Pfam:PF08696 eggNOG:COG1112 GO:GO:0017108
GO:GO:0043142 GO:GO:0033567 PANTHER:PTHR10887:SF14 KO:K10742
InterPro:IPR022765 Pfam:PF01930 EMBL:AACQ01000161 EMBL:AACQ01000157
RefSeq:XP_712310.1 RefSeq:XP_712454.1 ProteinModelPortal:Q59RL2
STRING:Q59RL2 GeneID:3645932 GeneID:3646072 KEGG:cal:CaO19.1192
KEGG:cal:CaO19.8783 Uniprot:Q59RL2
Length = 1426
Score = 190 (71.9 bits), Expect = 4.0e-20, Sum P(2) = 4.0e-20
Identities = 81/276 (29%), Positives = 131/276 (47%)
Query: 415 KRCILAGDQCQLAPVILSR-KALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASW 473
K+ ++ GD QL P++ K ++ + SL A H ++ LT QYRMN I +
Sbjct: 1119 KKFVMVGDHDQLQPLVTHPDKRVKQELSRSLFSLLAKEHPDSVS-HLTYQYRMNSDIMNV 1177
Query: 474 ASKEMYGGSL-ISSSTVASHLL-VDTPFVKPTWI-------TQCPLLLLDTR-----LPY 519
+ +Y L S VA + L + P V ++I +Q + D + L Y
Sbjct: 1178 CNTLIYNNKLKCGSEQVAQNSLKIPHPEVLNSFIGEDVSPDSQWIHKIFDEKNNVLFLDY 1237
Query: 520 GSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRE 579
++ EE++ G N EA ++ V +L+ GV I V S Y AQ+ L++
Sbjct: 1238 DAVP-AVEENV---GE-MVINTKEALLIQQIVNALVHGGVKEDEIGVMSFYRAQLSVLKK 1292
Query: 580 RLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVG-FLGDSRRMNVAITRACKH 638
L++L + +E+ T D +QGR+ + +IIS+VRSN G + + RR+NVA TRA
Sbjct: 1293 NLNNLKD---LEILTADQYQGRDKECIIISLVRSNERKFAGDLMKEYRRLNVATTRAKTK 1349
Query: 639 VAVVCDSSTICHN----TFLARLLRHIRYFGRVKHA 670
+ ++ T+ N TF+ L Y+ K A
Sbjct: 1350 LIILGSRFTLSTNELTKTFIDYLENEKWYYPLPKSA 1385
Score = 141 (54.7 bits), Expect = 4.0e-20, Sum P(2) = 4.0e-20
Identities = 32/83 (38%), Positives = 52/83 (62%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAV 292
+TF+ Q A+ + LI+ G PGTGKT ++ ++I V Q + VL+T+ TN+AV
Sbjct: 965 ETFNPDQIAALKKVFSADDYSLIV-GMPGTGKTTVIAQLIKVLVAQRKSVLLTSYTNSAV 1023
Query: 293 DNMVEKLSDVGLNIVRVGNPARI 315
DN++ KL D+ + +R+G P R+
Sbjct: 1024 DNILLKLKDLDIEFLRIGYPQRV 1046
>TAIR|locus:2173033 [details] [associations]
symbol:AT5G52090 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0004519 eggNOG:COG1112
EMBL:AB015478 KO:K10706 IPI:IPI00525648 RefSeq:NP_200022.1
UniGene:At.65668 ProteinModelPortal:Q9FJ83 SMR:Q9FJ83 PRIDE:Q9FJ83
EnsemblPlants:AT5G52090.1 GeneID:835285 KEGG:ath:AT5G52090
TAIR:At5g52090 HOGENOM:HOG000083772 InParanoid:Q9FJ83 OMA:TACEASE
PhylomeDB:Q9FJ83 ProtClustDB:CLSN2686886 Genevestigator:Q9FJ83
Uniprot:Q9FJ83
Length = 676
Score = 232 (86.7 bits), Expect = 5.3e-20, Sum P(2) = 5.3e-20
Identities = 103/426 (24%), Positives = 184/426 (43%)
Query: 269 KEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPAR-ISPAVASKSLGEI 327
+E++ GE V N+ + + + D+ ++ +V P + +AS+ +
Sbjct: 225 EEVVVNIPTFGE--FVQKNFNSLSEEVKTCIVDLYTHLPKVYLPYEDVKKMIASRQTLQR 282
Query: 328 VKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRXXXXXXXXXXXXXXXXXXXXXXS 387
++ L + + ++ + R D + L DD L A +R
Sbjct: 283 IRYFLRENSSRVDFEEGNFRFDCFKRLSDDCLKA-LRLLPKRFEIPDMLENEDIRKFCLQ 341
Query: 388 SAQVVLATNTGAADPLIRRLDTFDLVG-------KRC--------------ILAGDQCQL 426
+A ++L T +GAA+ + R +L+ K C IL GD+ QL
Sbjct: 342 NADIILCTASGAAEMNVERTGNVELLVVDEAAQLKECESVAALQLPGLRHAILIGDEFQL 401
Query: 427 APVILSRKALEGGIGVSLLERAATL-HEGVLATKLTTQYRMNDAIASWASKEMYGGSLIS 485
++ + + G SL ER L H L L QYRM+ +I+ + +KE YGG +
Sbjct: 402 PAMVHNEMCEKAKFGRSLFERLVLLGHNKHL---LDVQYRMHPSISRFPNKEFYGGRIKD 458
Query: 486 SSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAE 545
+ V + F+K + D+ + ++ G EE D +
Sbjct: 459 AENVKESIY-QKRFLKGN--------MFDS-FSFINVGRGKEEFGDGHSPKNMVEVAVIS 508
Query: 546 IVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDD-LPEAAG----VEVATIDSFQG 600
++ +++ + C ++ V SPY Q++ ++E++ D +G + V ++D FQG
Sbjct: 509 EIISNLYKVSCERRMKVSVGVVSPYKGQMRAIQEKIGDKYSSLSGQQFTLNVRSVDGFQG 568
Query: 601 READAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTIC-HNTFLARLLR 659
E D +IIS VRSN G VGFL + +R NVA+TRA + V+ + +T+ + A L+
Sbjct: 569 GEEDIIIISTVRSNGNGKVGFLNNRQRANVALTRARHCLWVIGNETTLALSGSIWATLIS 628
Query: 660 HIRYFG 665
R G
Sbjct: 629 ESRTRG 634
Score = 87 (35.7 bits), Expect = 5.3e-20, Sum P(2) = 5.3e-20
Identities = 29/90 (32%), Positives = 45/90 (50%)
Query: 216 ENDLADWSEVKLDGIMGKTFDDSQKKAIALGL------NKKRPLLIIQGPPGTGKTGLLK 269
END S++ LD I + SQ+ AI LG K + +I GPP TGKT +
Sbjct: 41 END--GRSDLVLDIIRSTKLNSSQEDAI-LGCLETRNCTHKNSVKLIWGPPRTGKTKTVA 97
Query: 270 EIIARAVQQGERVLVTAPTNAAVDNMVEKL 299
++ ++ + +V APTN A+ + +L
Sbjct: 98 TLLFALLKLRCKTVVCAPTNTAIVQVTSRL 127
>TAIR|locus:2166183 [details] [associations]
symbol:AT5G37160 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0016787
"hydrolase activity" evidence=IEA] EMBL:CP002688 GO:GO:0004519
KO:K10706 IPI:IPI00521499 RefSeq:NP_198532.1 UniGene:At.55177
ProteinModelPortal:F4K5W6 SMR:F4K5W6 PRIDE:F4K5W6
EnsemblPlants:AT5G37160.1 GeneID:833689 KEGG:ath:AT5G37160
OMA:WAELISE Uniprot:F4K5W6
Length = 871
Score = 222 (83.2 bits), Expect = 1.4e-19, Sum P(3) = 1.4e-19
Identities = 71/255 (27%), Positives = 122/255 (47%)
Query: 418 ILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKE 477
+L GD+ QL ++ + + + G SL ER + G L QYRM+ +I+ + +KE
Sbjct: 589 LLIGDEYQLPAMVHNEECDKAKFGRSLFERLVLI--GHSKHLLNVQYRMHPSISRFPNKE 646
Query: 478 MYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGS 537
YGG + ++ V + + F++ + T + ++ G EE D +
Sbjct: 647 FYGGRITDAANVQESIY-EKRFLQGN--------MFGT-FSFINVGRGKEEFGDGHSPKN 696
Query: 538 FYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVE------ 591
++ ++F + ++ V SPY QV+ ++ER+ D + V+
Sbjct: 697 MVEVAVISKIISNLFKVSSQRKQKMSVGVISPYKGQVRAIQERVGDKYNSLSVDQLFTLN 756
Query: 592 VATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTIC-H 650
V ++D FQG E D +IIS VR N G VGFL + +R NVA+TRA + V+ + +T+
Sbjct: 757 VQSVDGFQGGEVDVIIISTVRCNVNGNVGFLSNRQRANVALTRARHCLWVIGNGTTLALS 816
Query: 651 NTFLARLLRHIRYFG 665
+ A L+ R G
Sbjct: 817 GSIWAELISESRTRG 831
Score = 100 (40.3 bits), Expect = 1.4e-19, Sum P(3) = 1.4e-19
Identities = 38/124 (30%), Positives = 60/124 (48%)
Query: 189 NGLHKRNPSIAAVVTLFGDKEDVTWLE-----ENDL--ADWSEVKLDGIMGKTFDDSQKK 241
N LHK + ++ +ED + E END+ +D V +D I + SQ+
Sbjct: 194 NALHKDAADSTLIQSVL--QEDASATEQCFSCENDVDGSDSDRV-VDIIRSAKLNSSQEA 250
Query: 242 AIALGLNK------KRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNM 295
AI LG K K + +I GPPGTGKT + +++ +Q + +V APTN + +
Sbjct: 251 AI-LGFLKTRNCKHKESVKLIWGPPGTGKTKTVATLLSTLMQLKCKTVVCAPTNTTIVAV 309
Query: 296 VEKL 299
+L
Sbjct: 310 ASRL 313
Score = 47 (21.6 bits), Expect = 3.7e-14, Sum P(3) = 3.7e-14
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 271 IIARAVQQGERVLVTAPTNAAVDNMVEK 298
+ +R + + +V APTN+A+ +V +
Sbjct: 309 VASRLLSLSKETIVCAPTNSAIAEVVSR 336
Score = 41 (19.5 bits), Expect = 1.4e-19, Sum P(3) = 1.4e-19
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 4 ERVKTIQSR---LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEF 57
E++ TI R +DE++Q L E EL + L+ P S +K IE+
Sbjct: 38 EKIMTIPDRFSSVDEYSQCFVPHLLEETRTELFSSFRSLSKSPVSRILSVETKVIEY 94
>TAIR|locus:2166173 [details] [associations]
symbol:AT5G37150 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0016787
"hydrolase activity" evidence=IEA] EMBL:CP002688 GO:GO:0004386
KO:K10706 IPI:IPI01020555 RefSeq:NP_198531.2 UniGene:At.55176
ProteinModelPortal:F4K5W5 SMR:F4K5W5 PRIDE:F4K5W5
EnsemblPlants:AT5G37150.1 GeneID:833688 KEGG:ath:AT5G37150
OMA:RSVDEYY Uniprot:F4K5W5
Length = 839
Score = 227 (85.0 bits), Expect = 4.5e-19, Sum P(3) = 4.5e-19
Identities = 73/258 (28%), Positives = 122/258 (47%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL-HEGVLATKLTTQYRMNDAIASW 473
+ IL GD+ QL ++ + + G SL ER L H L L QYRM+ +I+ +
Sbjct: 553 RHAILIGDEFQLPAMVHNEMCEKAKFGRSLFERLVLLGHNKHL---LDVQYRMHPSISRF 609
Query: 474 ASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLA 533
+KE YGG + + V + F++ + ++ G EE D
Sbjct: 610 PNKEFYGGRIKDAENVKESIY-QKRFLQGNMFGSFSFI---------NVGRGKEEFGDGH 659
Query: 534 GTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDD-LPEAAG--- 589
+ ++ ++F + C ++ V SPY Q++ ++E++ D +G
Sbjct: 660 SPKNMVEVAVVSEIISNLFKVSCERRMKVSVGVVSPYKGQMRAIQEKIGDKYSSLSGQQF 719
Query: 590 -VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
+ V ++D FQG E D +IIS VRSN+ G VGFL + +R NVA+TRA + V+ + +T+
Sbjct: 720 ALNVRSVDGFQGGEEDIIIISTVRSNSNGKVGFLNNRQRANVALTRARHCLWVIGNETTL 779
Query: 649 C-HNTFLARLLRHIRYFG 665
+ A L+ R G
Sbjct: 780 ALSGSIWATLISESRTRG 797
Score = 88 (36.0 bits), Expect = 4.5e-19, Sum P(3) = 4.5e-19
Identities = 26/79 (32%), Positives = 40/79 (50%)
Query: 227 LDGIMGKTFDDSQKKAIALGL------NKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE 280
LD I + SQ+ AI LG K + +I GPPGTGKT + ++ ++
Sbjct: 213 LDIIRSTKLNSSQEDAI-LGCLETRNCTHKNSVKLIWGPPGTGKTKTVATLLFALLKLRC 271
Query: 281 RVLVTAPTNAAVDNMVEKL 299
+ +V APTN A+ + +L
Sbjct: 272 KTVVCAPTNTAIVQVASRL 290
Score = 42 (19.8 bits), Expect = 4.5e-19, Sum P(3) = 4.5e-19
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 388 SAQVVLATNTGAADPLIRRLDTFDLV 413
+A ++L T +GAA+ + R +L+
Sbjct: 505 NADIILCTASGAAEMNVERTGNVELL 530
>TAIR|locus:2018561 [details] [associations]
symbol:AT1G65810 species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0048451 "petal formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
EMBL:CP002684 GO:GO:0004386 KO:K10706 InterPro:IPR026852
PANTHER:PTHR10887:SF27 IPI:IPI01019905 RefSeq:NP_176757.1
UniGene:At.52388 ProteinModelPortal:F4IBK8 SMR:F4IBK8 PRIDE:F4IBK8
EnsemblPlants:AT1G65810.1 GeneID:842892 KEGG:ath:AT1G65810
OMA:DSEINKR ArrayExpress:F4IBK8 Uniprot:F4IBK8
Length = 1050
Score = 227 (85.0 bits), Expect = 4.6e-19, Sum P(2) = 4.6e-19
Identities = 80/251 (31%), Positives = 121/251 (48%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL-HEGVLATKLTTQYRMNDAIASW 473
+ IL GD+ QL +I S A E +G SL ER L H L L QYRM+ +I+ +
Sbjct: 579 QHAILIGDEKQLPAMIKSNIASEADLGRSLFERLVLLGHNKQL---LNMQYRMHPSISIF 635
Query: 474 ASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLA 533
++E Y ++ + +V + F+ P ++ + YG G
Sbjct: 636 PNREFYDMKILDAPSVRLRSY-EKKFLPEKMYG--PYSFIN--IAYGREQFG-------E 683
Query: 534 GTGSFYNEGEAEIVVHHVFSLICAGVSPS---AIAVQSPYVAQVQHLRERLDDLPEAAG- 589
G S N E +V V L ++ V SPY AQV ++ER+ + G
Sbjct: 684 GYSS-KNLVEVSVVAEIVSKLYSVSRKTGRTISVGVISPYKAQVFAIQERIGEKYNTEGT 742
Query: 590 --VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSST 647
V V ++D FQG E D +IIS VRSN GA+GFL + +R NVA+TRA + ++ + +T
Sbjct: 743 FTVSVRSVDGFQGGEEDIIIISTVRSNGNGAIGFLSNQQRTNVALTRARYCLWILGNEAT 802
Query: 648 ICHNTFLARLL 658
+ +N + R L
Sbjct: 803 LTNNRSVWRQL 813
Score = 89 (36.4 bits), Expect = 4.6e-19, Sum P(2) = 4.6e-19
Identities = 25/86 (29%), Positives = 43/86 (50%)
Query: 216 ENDLADWSEVKLDGI-MGKTFDDSQKKAI-ALGLNKKRPLLIIQGPPGTGKTGLLKEIIA 273
E+ ++D+S L + + +D+ + + A N + +I GPPGTGKT ++
Sbjct: 251 ESVVSDYSARMLRSFKLNSSQEDAILRCLEAKSCNHSNNIKLIWGPPGTGKTKTTSVLLL 310
Query: 274 RAVQQGERVLVTAPTNAAVDNMVEKL 299
++ R L APTN AV + +L
Sbjct: 311 NFLKMRCRTLTCAPTNIAVLEVCSRL 336
Score = 44 (20.5 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 180 CEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLAD-WSEVKLD 228
C L+ L L + +V LFG+KE + + DL D + E ++D
Sbjct: 333 CSRLVKLVSESLRFDGYGLGDIV-LFGNKERMKIDDREDLFDVFLEYRVD 381
>DICTYBASE|DDB_G0268924 [details] [associations]
symbol:DDB_G0268924 "Helicase SEN1" species:44689
"Dictyostelium discoideum" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 SMART:SM00382 dictyBase:DDB_G0268924
GO:GO:0005524 EMBL:AAFI02000004 GO:GO:0017111 eggNOG:COG1112
ProtClustDB:CLSZ2429765 RefSeq:XP_646844.2
ProteinModelPortal:Q55F26 EnsemblProtists:DDB0202279 GeneID:8616527
KEGG:ddi:DDB_G0268924 InParanoid:Q55F26 Uniprot:Q55F26
Length = 1772
Score = 213 (80.0 bits), Expect = 4.8e-19, Sum P(3) = 4.8e-19
Identities = 70/236 (29%), Positives = 109/236 (46%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
++ IL GD QL P I S ++ E G+ +SL ER L + + L QYRM+ I+ +
Sbjct: 1405 EKLILVGDPLQLPPTIFSTESAENGLNISLFER---LSKVLPVEMLHVQYRMHPTISRFP 1461
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAG 534
S + Y L+ V S + F I P+ D + +E +G
Sbjct: 1462 SNQFYRDRLLDGDNVKSLVYNQHNFHSD--IKYGPIRFYDV--------IDSKEE---SG 1508
Query: 535 TGSFYNEGEAEIVVHHVFSLI--CAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEV 592
S N+ E +V + L+ + + +PY Q ++E+ +E
Sbjct: 1509 KRSLKNKLEITMVFTLIKKLVQDYPECKKFSFGIITPYKLQKSEIKEQHKQFNYPLNIET 1568
Query: 593 ATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
+TID FQG E D +I+S VRS +GFL D RR+NVA+TRA + V+ +S +
Sbjct: 1569 STIDGFQGSEKDIIILSCVRSER---IGFLSDRRRINVALTRAKFGLFVIGNSKLL 1621
Score = 115 (45.5 bits), Expect = 4.8e-19, Sum P(3) = 4.8e-19
Identities = 34/99 (34%), Positives = 55/99 (55%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIA--RAVQQGERVLVTAPTNAAVDNM 295
SQ +I L+ K + +IQGPPGTGKT + +++ A+ ++LV P++A+VD +
Sbjct: 1246 SQFNSIETSLSTKG-ITLIQGPPGTGKTTTIYYLLSILLAINPEFKILVCGPSHASVDEI 1304
Query: 296 VEKLSD---VGL-------NIVRVGNPARISPAVASKSL 324
++ S +GL N+VR+G ISP S S+
Sbjct: 1305 AKRCSKKKLIGLDGKPYLPNMVRIGKKENISPDCHSISI 1343
Score = 42 (19.8 bits), Expect = 4.8e-19, Sum P(3) = 4.8e-19
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 190 GLHKRNPSIAAVVTLFGDKEDVTWLE-ENDLADWSEVKL--DGIMGKTFDDSQKKAIALG 246
GL K + F + D + ++ E D+ D S+ D ++ K FD++ + A+G
Sbjct: 1068 GLDKIKMIDGPTIHSFKEISDYSIMKFEIDVNDGSQELFYNDVLLFKVFDNTNEPMFAMG 1127
Query: 247 L 247
L
Sbjct: 1128 L 1128
>TAIR|locus:2059088 [details] [associations]
symbol:AT2G19120 "AT2G19120" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0009506 "plasmodesma" evidence=IDA] GO:GO:0009506
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0004386 GO:GO:0004519
eggNOG:COG1112 EMBL:AC002392 KO:K10706 InterPro:IPR026852
PANTHER:PTHR10887:SF27 IPI:IPI00542366 PIR:T00533
RefSeq:NP_179502.1 UniGene:At.52824 ProteinModelPortal:O64476
SMR:O64476 PaxDb:O64476 PRIDE:O64476 EnsemblPlants:AT2G19120.1
GeneID:816429 KEGG:ath:AT2G19120 TAIR:At2g19120
HOGENOM:HOG000084788 InParanoid:O64476 OMA:DWAALIS PhylomeDB:O64476
ProtClustDB:CLSN2683158 ArrayExpress:O64476 Genevestigator:O64476
Uniprot:O64476
Length = 1090
Score = 231 (86.4 bits), Expect = 1.3e-18, Sum P(3) = 1.3e-18
Identities = 88/282 (31%), Positives = 134/282 (47%)
Query: 416 RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWAS 475
RC+L GD QL ++S+ A SL ER G LT QYRM+ I + S
Sbjct: 801 RCVLVGDPQQLPATVISKAAGTLLYSRSLFERFQLA--GCPTLLLTVQYRMHPQIRDFPS 858
Query: 476 KEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGT 535
+ Y G L S +++S D + K + P L + +S G E H G+
Sbjct: 859 RYFYQGRLKDSESISS--APDEIYYKDPVLR--PYLFFN-------ISHGRESHR--GGS 905
Query: 536 GSFYNEGEAEIVV----HHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL---PEAA 588
S+ N EA V H +L G ++ V +PY Q++ L+ + E
Sbjct: 906 VSYENVDEARFCVGVYMHLQKTLKSLGAGKVSVGVITPYKLQLKCLKHEFGNALGQDELK 965
Query: 589 GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
+ + T+D+FQG+E D +I+S VR++ G VGF+ D RRMNVA+TRA + + V+ ++S +
Sbjct: 966 EIYINTVDAFQGQERDVIIMSCVRASGHG-VGFVSDIRRMNVALTRARRALWVMGNASAL 1024
Query: 649 CHNTFLARLLRHIRYFGRVKHAEPGSFGGSGLGMDPMLPSIS 690
+ A L+ R GR E S L +D +P +S
Sbjct: 1025 MKSEDWAALISDAR--GRNCFMEMDS-----LPLDFPIPKVS 1059
Score = 65 (27.9 bits), Expect = 1.3e-18, Sum P(3) = 1.3e-18
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 246 GLNKKRP--LLIIQGPPGTGKT 265
G+ K+ P ++QGPPGTGKT
Sbjct: 488 GVKKQEPWPFTLVQGPPGTGKT 509
Score = 61 (26.5 bits), Expect = 1.3e-18, Sum P(3) = 1.3e-18
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 281 RVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARI-SPAVASKSLGEIVKSKLASFVAEF 339
R+LV AP+NAA D ++ ++ D G + R+ P VA +G +S+ A V+
Sbjct: 580 RMLVCAPSNAATDELLSRVLDRGF----IDGEMRVYRPDVAR--VGVDSQSRAAQAVS-V 632
Query: 340 ERKKSDL 346
ER+ L
Sbjct: 633 ERRSDQL 639
Score = 51 (23.0 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
Identities = 13/63 (20%), Positives = 31/63 (49%)
Query: 269 KEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV 328
+++ +R + V++ A+ ++ L+ V VG+P ++ V SK+ G ++
Sbjct: 765 RKLFSRLTHGFDMVVIDEAAQASEVGVLPPLALGAARCVLVGDPQQLPATVISKAAGTLL 824
Query: 329 KSK 331
S+
Sbjct: 825 YSR 827
Score = 42 (19.8 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 19/67 (28%), Positives = 28/67 (41%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGE---------RVLVTAPTNAAVDNMVEKLSD 301
+P +++ P LL ++ R GE RV V + + AA VE+ SD
Sbjct: 578 KPRMLVCAPSNAATDELLSRVLDRGFIDGEMRVYRPDVARVGVDSQSRAAQAVSVERRSD 637
Query: 302 VGLNIVR 308
L I R
Sbjct: 638 QLLAISR 644
>FB|FBgn0030170 [details] [associations]
symbol:CG2990 species:7227 "Drosophila melanogaster"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=ISS] [GO:0033567 "DNA replication, Okazaki
fragment processing" evidence=IEA] [GO:0017108 "5'-flap
endonuclease activity" evidence=IEA] [GO:0043142 "single-stranded
DNA-dependent ATPase activity" evidence=IEA] InterPro:IPR026851
InterPro:IPR014808 Pfam:PF08696 EMBL:AE014298 GO:GO:0006200
GO:GO:0017108 GO:GO:0043142 GO:GO:0033567 PANTHER:PTHR10887:SF14
KO:K10742 GeneTree:ENSGT00550000074852 OMA:EHESLCH
FlyBase:FBgn0030170 EMBL:BT088860 RefSeq:NP_727386.1
UniGene:Dm.17561 SMR:Q8IRL9 STRING:Q8IRL9
EnsemblMetazoa:FBtr0071415 GeneID:31934 KEGG:dme:Dmel_CG2990
UCSC:CG2990-RB InParanoid:Q8IRL9 GenomeRNAi:31934 NextBio:776017
Uniprot:Q8IRL9
Length = 1100
Score = 131 (51.2 bits), Expect = 2.3e-18, Sum P(4) = 2.3e-18
Identities = 32/79 (40%), Positives = 50/79 (63%)
Query: 254 LIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPA 313
L+I+G PGTGKT L ++ G+ VL+TA T++AVDN++ +L GL ++R+G+ +
Sbjct: 655 LLIKGLPGTGKTQTLVALVRLLHLLGKSVLITAQTHSAVDNLIMRLLPFGLPMMRLGSGS 714
Query: 314 RISPAVASKSLGEIVKSKL 332
RI K L EI + +L
Sbjct: 715 RIH-----KQLEEISEERL 728
Score = 123 (48.4 bits), Expect = 2.3e-18, Sum P(4) = 2.3e-18
Identities = 43/141 (30%), Positives = 67/141 (47%)
Query: 538 FYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDS 597
+ N EA IV+H + L+ +G S I V +PY AQV+ ++ L +E T+D
Sbjct: 942 YTNYCEAGIVMHLLRYLLKSGYEASRIGVIAPYRAQVELFKKLASKLD--TDLECNTVDQ 999
Query: 598 FQGREADAVIISMVRSN-------TLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICH 650
FQGR+ + +I S ++ L D RR+ VAITRA + ++ D +
Sbjct: 1000 FQGRDKNLIIYSCSKTGGDFSDMERSREAEILEDQRRLTVAITRAKNKLILLGDIKCLEQ 1059
Query: 651 NTFLARLLRHIRYFGRVKHAE 671
+L +HI R+K E
Sbjct: 1060 YGPFRQLFKHIPDRCRLKLEE 1080
Score = 104 (41.7 bits), Expect = 2.3e-18, Sum P(4) = 2.3e-18
Identities = 29/90 (32%), Positives = 45/90 (50%)
Query: 418 ILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKE 477
+L GD QL P++ S++A + G +L +R + E A L+ QYRMN I A++
Sbjct: 792 VLVGDPEQLPPIVRSKEARQRGADETLFQRLDS--EKATAV-LSLQYRMNKTITRLANEL 848
Query: 478 MYGGSLISSSTVASHLLVDTPFVK--PTWI 505
YGG L +S S + + P W+
Sbjct: 849 TYGGDLKCASDEVSGARFEVELLNEAPRWV 878
Score = 46 (21.3 bits), Expect = 2.3e-18, Sum P(4) = 2.3e-18
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 24 LRIERDAELEFTQEELNAVPTPDENSDSS---KPIEFLVSHGRAPQELCDTI 72
LR+ERD +++E + D S ++ + L+S G QEL D I
Sbjct: 560 LRLERDLSQRYSEETF-IIDKHDSQSFATFNFTNLGMLLSEGERFQELRDII 610
Score = 42 (19.8 bits), Expect = 5.3e-09, Sum P(3) = 5.3e-09
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 304 LNIVRVGNPARISPAVASKSLGEIV----KSKLA---SFVAEFERKKSDLR--KDLRQCL 354
L + +P+R +++ LGE V S+LA F+ E ++ DLR +DL Q
Sbjct: 512 LELGEEADPSR-DLSLSGFDLGEYVVISSTSRLAVAAGFIVSIEARRLDLRLERDLSQRY 570
Query: 355 KDDS 358
+++
Sbjct: 571 SEET 574
>TAIR|locus:2126480 [details] [associations]
symbol:AT4G30100 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009506 "plasmodesma"
evidence=IDA] GO:GO:0009506 EMBL:CP002687 EMBL:AL161576
GO:GO:0004519 eggNOG:COG1112 EMBL:AL078464 KO:K10706
InterPro:IPR026852 PANTHER:PTHR10887:SF27 HOGENOM:HOG000084788
ProtClustDB:CLSN2683158 IPI:IPI00535923 PIR:T08986
RefSeq:NP_194739.1 UniGene:At.31859 ProteinModelPortal:Q9SZW3
SMR:Q9SZW3 STRING:Q9SZW3 PaxDb:Q9SZW3 PRIDE:Q9SZW3
EnsemblPlants:AT4G30100.1 GeneID:829133 KEGG:ath:AT4G30100
TAIR:At4g30100 InParanoid:Q9SZW3 PhylomeDB:Q9SZW3
ArrayExpress:Q9SZW3 Genevestigator:Q9SZW3 Uniprot:Q9SZW3
Length = 1311
Score = 228 (85.3 bits), Expect = 3.0e-18, Sum P(4) = 3.0e-18
Identities = 78/240 (32%), Positives = 119/240 (49%)
Query: 416 RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWAS 475
RC+L GD QL ++S+ A SL ER G LT QYRM+ I + S
Sbjct: 964 RCVLVGDPQQLPATVISKAAGTLLYSRSLFERFQLA--GCPTLLLTVQYRMHPQIRDFPS 1021
Query: 476 KEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGT 535
+ Y G L S +V++ D + K + + P L D +S G E H G+
Sbjct: 1022 RYFYQGRLTDSESVST--APDEIYYKDSVLK--PYLFFD-------ISHGRESHR--GGS 1068
Query: 536 GSFYNEGEAEIVV----HHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL---PEAA 588
S+ N EA V H +L G ++ V +PY Q++ L+ + E
Sbjct: 1069 VSYENIDEARFCVGVYLHLQRTLKSLGGGKVSVGVITPYKLQLKCLKIEFGNALSQDELQ 1128
Query: 589 GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
+ + T+D+FQG+E D +I+S VR++ G VGF+ D RRMNVA+TRA + + V+ ++S +
Sbjct: 1129 EIYINTVDAFQGQERDVIIMSCVRASNHG-VGFVADIRRMNVALTRAKRALWVMGNASAL 1187
Score = 64 (27.6 bits), Expect = 3.0e-18, Sum P(4) = 3.0e-18
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 281 RVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARI-SPAVASKSLGEIVKSKLASFVAEF 339
R+LV AP+NAA D ++ ++ D G + R+ P VA +G ++K A V+
Sbjct: 743 RMLVCAPSNAATDELLSRVLDRGF----IDGEMRVYRPDVAR--VGVDTQTKAAQAVS-V 795
Query: 340 ERKKSDL 346
ER+ SDL
Sbjct: 796 ERR-SDL 801
Score = 63 (27.2 bits), Expect = 3.0e-18, Sum P(4) = 3.0e-18
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 252 PLLIIQGPPGTGKT 265
P ++QGPPGTGKT
Sbjct: 660 PFTLVQGPPGTGKT 673
Score = 51 (23.0 bits), Expect = 6.2e-17, Sum P(4) = 6.2e-17
Identities = 13/63 (20%), Positives = 31/63 (49%)
Query: 269 KEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV 328
+++ +R + V++ A+ ++ L+ V VG+P ++ V SK+ G ++
Sbjct: 928 RKLFSRLTHGFDMVVIDEAAQASEVGVLPPLALGAARCVLVGDPQQLPATVISKAAGTLL 987
Query: 329 KSK 331
S+
Sbjct: 988 YSR 990
Score = 44 (20.5 bits), Expect = 3.0e-18, Sum P(4) = 3.0e-18
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 2 DLERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEEL 39
DL+ V +DE+ + LL E A+L T EEL
Sbjct: 417 DLQSVPERFESMDEYVRVFEPLLFEECRAQLYSTWEEL 454
Score = 43 (20.2 bits), Expect = 5.5e-14, Sum P(3) = 5.5e-14
Identities = 17/61 (27%), Positives = 25/61 (40%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGE---------RVLVTAPTNAAVDNMVEKLSD 301
+P +++ P LL ++ R GE RV V T AA VE+ SD
Sbjct: 741 KPRMLVCAPSNAATDELLSRVLDRGFIDGEMRVYRPDVARVGVDTQTKAAQAVSVERRSD 800
Query: 302 V 302
+
Sbjct: 801 L 801
>DICTYBASE|DDB_G0268660 [details] [associations]
symbol:DDB_G0268660 "DNA2/NAM7 helicase family
protein" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR003593 SMART:SM00382 dictyBase:DDB_G0268660
Pfam:PF03828 GO:GO:0005524 EMBL:AAFI02000004 GO:GO:0004386
eggNOG:COG1112 InterPro:IPR014001 SMART:SM00487 InterPro:IPR002058
ProtClustDB:CLSZ2429765 RefSeq:XP_646847.2
ProteinModelPortal:Q55F23 EnsemblProtists:DDB0304625 GeneID:8616530
KEGG:ddi:DDB_G0268660 InParanoid:Q55F23 Uniprot:Q55F23
Length = 2314
Score = 210 (79.0 bits), Expect = 4.0e-18, Sum P(3) = 4.0e-18
Identities = 70/236 (29%), Positives = 108/236 (45%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
++ IL GD QL P I S + E G+ +SL ER L + + L TQYRM+ I+ +
Sbjct: 1557 EKLILVGDPLQLPPTIFSSGSAENGLNISLFER---LSKVLPVEMLNTQYRMHPTISRFP 1613
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAG 534
S + Y L+ V S + F I P+ D + +E +G
Sbjct: 1614 SNQFYKDRLLDGDNVKSLVYNQHNFHSD--IKYGPIRFYDV--------IDSKEE---SG 1660
Query: 535 TGSFYNEGEAEIVVHHVFSLI--CAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEV 592
S N+ E +V + L+ + + +PY Q ++E+ +E
Sbjct: 1661 KRSLKNKLEITMVFTLIKKLVQDYPECKKFSFGIITPYKLQKSEIKEQHKQFNYPLNIET 1720
Query: 593 ATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
+TID QG E D +I+S VRS +GFL D RR+NVA+TRA + V+ +S +
Sbjct: 1721 STIDGVQGSEKDIIILSCVRSER---IGFLSDRRRINVALTRAKFGLFVIGNSKLL 1773
Score = 110 (43.8 bits), Expect = 4.0e-18, Sum P(3) = 4.0e-18
Identities = 32/92 (34%), Positives = 50/92 (54%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIA--RAVQQGERVLVTAPTNAAVDNM 295
SQ AI L+KK + +IQGPPGTGKT + +++ A+ ++LV P++A+VD +
Sbjct: 1398 SQFNAIETSLSKKG-ITLIQGPPGTGKTTTIYYLLSILLAINPKFKILVCGPSHASVDEV 1456
Query: 296 VEKLSDVGL----------NIVRVGNPARISP 317
++ L N+VR+G ISP
Sbjct: 1457 AKRCLKKSLINVDGKPYLPNMVRIGKLQNISP 1488
Score = 45 (20.9 bits), Expect = 4.0e-18, Sum P(3) = 4.0e-18
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 196 PSIAAVVTLFGDKEDVTW-LEENDLADWSEVKLDGIM-GKTFDDSQKKAIALGL 247
P+I + L D ++T+ ++ D + E+ L+ I+ K FD + K AL L
Sbjct: 1237 PTIHSFQELSEDSVEITFNIKVKD--ELEEIYLNDILLFKAFDHTNKPMFALSL 1288
Score = 42 (19.8 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 328 VKSKLASFVAEFERKKSDLR----KDLRQCLK 355
+KS + V F++K R KD+R+ LK
Sbjct: 671 IKSMVKDIVLPFKKKTESYRIGTSKDIRKLLK 702
>TAIR|locus:2166163 [details] [associations]
symbol:AT5G37140 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0016787
"hydrolase activity" evidence=IEA] EMBL:CP002688 GO:GO:0004519
KO:K10706 IPI:IPI00534313 RefSeq:NP_198530.1 UniGene:At.55175
ProteinModelPortal:F4K5W4 SMR:F4K5W4 PRIDE:F4K5W4
EnsemblPlants:AT5G37140.1 GeneID:833686 KEGG:ath:AT5G37140
OMA:TEAKYEH ArrayExpress:F4K5W4 Uniprot:F4K5W4
Length = 692
Score = 212 (79.7 bits), Expect = 4.1e-18, Sum P(3) = 4.1e-18
Identities = 74/257 (28%), Positives = 122/257 (47%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL-HEGVLATKLTTQYRMNDAIASW 473
+ +L GD+ QL P ++ +A G SL ER L H L L QYRM+ +I+ +
Sbjct: 411 RHAVLIGDELQL-PAMVHNEAK---FGRSLFERLVLLGHNKHL---LNVQYRMHPSISRF 463
Query: 474 ASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLA 533
+KE YGG + ++ V + F++ + ++ G EE D
Sbjct: 464 PNKEFYGGRIKDAANVQESIY-QKRFLQGNMFGSFSFI---------NVGRGEEEFGDGH 513
Query: 534 GTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDD-LPEAAGV-- 590
+ ++ ++F + ++ V SPY QV+ ++ER + +G+
Sbjct: 514 SPKNMVEVAVISEIISNLFKVSSERRIKMSVGVVSPYKGQVRAIQERTTNKYSSLSGLFT 573
Query: 591 -EVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTIC 649
V ++D FQG E D +IIS VRSN G VGFL + +R NVA+TRA + V+ + +T+
Sbjct: 574 LNVRSVDGFQGGEEDIIIISTVRSNGNGKVGFLNNRQRANVALTRARHCLWVIGNETTLA 633
Query: 650 -HNTFLARLLRHIRYFG 665
+ A+L+ R G
Sbjct: 634 LSGSSWAKLISESRTLG 650
Score = 93 (37.8 bits), Expect = 4.1e-18, Sum P(3) = 4.1e-18
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 248 NKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKL-------- 299
N K + +I GPPGTGKT + ++ ++ + +V APTN A+ + +L
Sbjct: 92 NHKHSVKLIWGPPGTGKTKTVATLLFCLLKLSCKTVVCAPTNTAIVEVTSRLLSLFKTSS 151
Query: 300 ---SDVGL-NIVRVGNPARI 315
S GL NIV GN AR+
Sbjct: 152 SEHSTYGLGNIVLSGNQARM 171
Score = 40 (19.1 bits), Expect = 4.1e-18, Sum P(3) = 4.1e-18
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 318 AVASKSLGEIVKSKLASFVAEFERKKSDL 346
A+ + GE VK F E E+ DL
Sbjct: 249 AIKILTFGEFVKKTFDGFSEELEKGMVDL 277
>UNIPROTKB|E1BAS6 [details] [associations]
symbol:SETX "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007623 "circadian rhythm" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
InterPro:IPR026121 GO:GO:0005737 GO:GO:0005654 GO:GO:0006302
GeneTree:ENSGT00580000081652 OMA:RLINHFE PANTHER:PTHR10887:SF15
EMBL:DAAA02032276 EMBL:DAAA02032274 EMBL:DAAA02032275
IPI:IPI00842535 Ensembl:ENSBTAT00000042924 Uniprot:E1BAS6
Length = 2662
Score = 205 (77.2 bits), Expect = 5.3e-18, Sum P(3) = 5.3e-18
Identities = 80/267 (29%), Positives = 127/267 (47%)
Query: 416 RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHE--------GVLAT-KLTTQYRM 466
+ +L GD QL P ++S KA + G S++ R L E G L +LT QYRM
Sbjct: 2191 KLVLVGDPKQLPPTVISVKAQDYGYDQSMMARFHKLLEESVEHNMIGRLPVLQLTIQYRM 2250
Query: 467 NDAIASWASKEMYGGSLISS-STVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
+ I + S +Y G L ++ T S D PF P L+ D +G
Sbjct: 2251 HPDICLFPSSYIYDGILRTNRGTETSRCSSDWPFQ--------PYLVFD---------VG 2293
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC---AGVSPSAIAVQSPYVAQVQHLRERLD 582
+ L+ S+ N E ++V+ + LI V+ I + + Y AQ +++ LD
Sbjct: 2294 --DGLERRDNDSYVNVQEIKLVME-LIKLIKDKRRDVTFRNIGIITHYKAQKTMIQKDLD 2350
Query: 583 -DLPEAAGVEVATIDSFQGREADAVIISMVRSN-TLGAVGFLGDSRRMNVAITRACKHVA 640
+ EV T+D+FQGR+ D VI++ VR+N T G++GFL +R+NV ITRA +
Sbjct: 2351 KEFDRKGAAEVDTVDAFQGRQKDCVIVTCVRANATQGSIGFLASLQRLNVTITRAKYSLF 2410
Query: 641 VVCDSSTICHNTFLARLLRHIRYFGRV 667
++ T+ N L++ + G +
Sbjct: 2411 ILGHLRTLVENRHWYHLIQDAQKRGAI 2437
Score = 85 (35.0 bits), Expect = 5.1e-14, Sum P(3) = 5.1e-14
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 253 LLIIQGPPGTGKT----GLLKEIIARAVQQG------------ERVLVTAPTNAAVDNMV 296
+ +I GPPGTGK+ G+L ++ ++G RVLV AP+NAAVD ++
Sbjct: 1948 ICLIHGPPGTGKSKTIVGILYRLLTENQRRGYSDENSNAKIKQNRVLVCAPSNAAVDELM 2007
Query: 297 EKL 299
+K+
Sbjct: 2008 KKI 2010
Score = 84 (34.6 bits), Expect = 5.3e-18, Sum P(3) = 5.3e-18
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 233 KTFDDSQKKAI--ALGLNKKRP----LLIIQGPPGTGKTGLLKEIIARAVQQGER 281
K F++ QKKAI A + K P + +I GPPGTGK+ + I+ R + + +R
Sbjct: 1922 KDFNEDQKKAIETACAMVKHSPSVAKICLIHGPPGTGKSKTIVGILYRLLTENQR 1976
Score = 77 (32.2 bits), Expect = 5.3e-18, Sum P(3) = 5.3e-18
Identities = 33/104 (31%), Positives = 49/104 (47%)
Query: 281 RVLVTAPTNAAVDNMVEKL------------SDVG----LNIVRVGNPARISPAVASKSL 324
RVLV AP+NAAVD +++K+ + +G +N+VR+G I+ V SL
Sbjct: 1992 RVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPMGNCGDINLVRLGPEKSINNEVLKFSL 2051
Query: 325 GEIV----KSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIR 364
V K L S V E ++K L L + + +L G R
Sbjct: 2052 DSQVNHRMKKDLPSHVQEMHKRKEFLDHQLDELSRQRALCRGGR 2095
Score = 37 (18.1 bits), Expect = 5.1e-14, Sum P(3) = 5.1e-14
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 306 IVRVGNPARISPAVAS 321
+V VG+P ++ P V S
Sbjct: 2192 LVLVGDPKQLPPTVIS 2207
>TAIR|locus:2135472 [details] [associations]
symbol:AT4G05540 species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] EMBL:CP002687 GO:GO:0004386
KO:K10706 IPI:IPI00530269 RefSeq:NP_567301.2 UniGene:At.54170
ProteinModelPortal:F4JGH5 SMR:F4JGH5 PRIDE:F4JGH5
EnsemblPlants:AT4G05540.1 GeneID:825906 KEGG:ath:AT4G05540
OMA:WVIGNER Uniprot:F4JGH5
Length = 689
Score = 208 (78.3 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
Identities = 68/237 (28%), Positives = 112/237 (47%)
Query: 418 ILAGDQCQLAPVILSRKALEGGIGVSLLERAATL-HEGVLATKLTTQYRMNDAIASWASK 476
+L GD+ QL ++ S + SL ER +L H+ L L QYRM+ +I+ + +
Sbjct: 460 VLIGDELQLPAMVQSEVCEKAKFVRSLFERLDSLGHKKHL---LNVQYRMHPSISLFPNM 516
Query: 477 EMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTG 536
E YGG IS + + F++ + ++ LG EE D
Sbjct: 517 EFYGGK-ISDAEIVKESTYQKRFLQGNMFGSFSFI---------NVGLGKEEFGDGHSPK 566
Query: 537 SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG-----VE 591
+ ++ ++ + + ++ V SPY AQV ++ER+ D + +
Sbjct: 567 NMVEIAVVSEILTNLLKVSSETKTKMSVGVISPYKAQVSAIQERIGDKYTSVSDNLFTLN 626
Query: 592 VATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
V ++D FQG E D +IIS VRSN G +GFL + +R NVA+TRA + V+ + T+
Sbjct: 627 VRSVDGFQGGEEDIIIISTVRSNCNGNIGFLSNRQRANVALTRARHCLWVIGNERTL 683
Score = 92 (37.4 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
Identities = 35/113 (30%), Positives = 49/113 (43%)
Query: 221 DWSEVKLDGIMGKTFDDSQKKAIALGLNK-----KRPLLIIQGPPGTGKTGLLKEIIARA 275
+W LD I + SQ+ AI L K + +I GPPGTG T + ++
Sbjct: 95 NWGNHVLDIIRSANLNSSQESAILACLETREIRDKTSVKLIWGPPGTGNTKTVATLLFAL 154
Query: 276 VQQGERVLVTAPTNAAVDNMVEKL------------SDVGL-NIVRVGNPARI 315
+ + +V PTN AV + +L S GL NIV VGN R+
Sbjct: 155 LSLSCKTVVCTPTNTAVVAVASRLLALFKESSSTEHSTYGLGNIVLVGNRVRM 207
Score = 42 (19.8 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 170 LADTLTYERNCEALMLLQKNGLH 192
+ D + CE++ LQ GLH
Sbjct: 435 VVDEAAQLKECESVAALQLQGLH 457
Score = 40 (19.1 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 388 SAQVVLATNTGAADPLIRRLDTFDLV 413
+A ++ T +GAA+ R + D++
Sbjct: 409 NAHIIFCTASGAAEMTAERAGSIDML 434
>UNIPROTKB|E1BG37 [details] [associations]
symbol:E1BG37 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR010666 Pfam:PF06839 GO:GO:0008270
GeneTree:ENSGT00550000074391 EMBL:DAAA02016483 IPI:IPI00912094
Ensembl:ENSBTAT00000017567 OMA:HKLGTNK Uniprot:E1BG37
Length = 933
Score = 222 (83.2 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 77/261 (29%), Positives = 126/261 (48%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
++ IL GD QL P I A G+ G L TQYR + I++ A
Sbjct: 652 EKLILVGDPKQLPPTIQGSDAAHEN-GLEQTLFDRLCLMGHKPILLRTQYRCHPTISAIA 710
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAG 534
+ Y G+L++ + +P ++ W+ P L Y L E ++
Sbjct: 711 NDLFYEGNLMNGISETER----SPLLE--WL---PTLCF-----YNVKGL---EQIERGN 753
Query: 535 TGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQ---HLRERLD-DLPEAAGV 590
SF+N EA + + SLI +G++ S I V + Y +Q+ HL +D D P V
Sbjct: 754 --SFHNVAEAAFTLKLIQSLIASGIAGSMIGVITLYKSQMYKLCHLLSAMDFDHPNLKAV 811
Query: 591 EVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICH 650
+V+T+D+FQG E + +I+S VR+ VGF+ +RMNVA+TR +H+ +V + + +
Sbjct: 812 QVSTVDAFQGAEKEIIILSCVRTRQ---VGFIDSEKRMNVALTRGRRHLLIVGNLACLRK 868
Query: 651 NTFLARLLRHIR-YFGRVKHA 670
N R+++H G ++HA
Sbjct: 869 NRLWGRVIQHCEGREGGLQHA 889
Score = 78 (32.5 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 39/142 (27%), Positives = 65/142 (45%)
Query: 197 SIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLII 256
SI A + L + V L ++ A + +++ +M + K +A+ P+ II
Sbjct: 421 SIEATLKLASELIQVHKLNKDQAA--ALIQIAQMMASRQSVEEAKELAI---HTLPITII 475
Query: 257 QGPPGTGKTGLLKEIIARAVQQGER-------------VLVTAPTNAAVDNMVEKLSDVG 303
G G GK+ LL +I VQ E+ +L+++ TN AVD ++ L +G
Sbjct: 476 HGVFGAGKSYLLAVVILFFVQLFEKCEALTVGNARPWKLLISSSTNVAVDRVLLGLLSLG 535
Query: 304 LN-IVRVGNPARISPAVASKSL 324
VRVG+ +I+ V SL
Sbjct: 536 FEKFVRVGSVRKIAKPVLPYSL 557
>UNIPROTKB|F6QXW0 [details] [associations]
symbol:dna2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:8364 "Xenopus (Silurana)
tropicalis" [GO:0000076 "DNA replication checkpoint" evidence=ISS]
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0004518 "nuclease activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0017108 "5'-flap endonuclease activity" evidence=ISS]
[GO:0032508 "DNA duplex unwinding" evidence=ISS] [GO:0033567 "DNA
replication, Okazaki fragment processing" evidence=ISS] [GO:0043139
"5'-3' DNA helicase activity" evidence=ISS] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=ISS]
InterPro:IPR026851 InterPro:IPR014808 Pfam:PF08696 GO:GO:0005739
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0051539 GO:GO:0000729 GO:GO:0017108 GO:GO:0000076
GO:GO:0043139 GO:GO:0043142 GO:GO:0033567 PANTHER:PTHR10887:SF14
GeneTree:ENSGT00550000074852 OMA:EHESLCH EMBL:AAMC01051984
EMBL:AAMC01051985 EMBL:AAMC01051986 Ensembl:ENSXETT00000016310
Uniprot:F6QXW0
Length = 1048
Score = 238 (88.8 bits), Expect = 2.1e-17, Sum P(3) = 2.1e-17
Identities = 77/237 (32%), Positives = 121/237 (51%)
Query: 437 EGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD 496
E G+ SL +R E V+ +LT QYRMN I + ++K +Y G L +S S+ +V
Sbjct: 798 ELGMSESLFKRLERNQEAVV--QLTVQYRMNSQIMALSNKLVYEGRLECASDRVSNAVVK 855
Query: 497 TPFVKPTWI------TQCPLLLLDTRLPYGSLS-LGCEE--HLDLAGTGSFYNEGEAEIV 547
P +K + +Q + + D P + L E+ L+ G N EA++V
Sbjct: 856 LPHIKTLLLELEFRESQESMWIKDVLEPSNPVCFLNTEKIPALETEEKGGISNWIEAKLV 915
Query: 548 VHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVI 607
+ AG PS I + +PY Q++ + + L A+ VEV T+D +QGR+ +I
Sbjct: 916 FCLTKLFLKAGCRPSDIGIIAPYRQQLKVISNYFNSL-SASAVEVNTVDKYQGRDKSVII 974
Query: 608 ISMVRSNTLGAVG-FLGDSRRMNVAITRACKHVAVVCDS-STICHNTFLARLLRHIR 662
+S VRSN G +G L D RR+NVA+TRA KH ++ T+ L +L+ H++
Sbjct: 975 VSFVRSNIDGKLGDLLKDWRRLNVALTRA-KHKLIMLGCVPTLSRFLCLEQLICHLK 1030
Score = 58 (25.5 bits), Expect = 2.1e-17, Sum P(3) = 2.1e-17
Identities = 30/123 (24%), Positives = 52/123 (42%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARA-VQQGERVLVTAPTNAA 291
K + QK+A+ L K LI+ G PGTGKT + +++ ++ LV AA
Sbjct: 625 KGLNKPQKQAMKRVLLSKDYTLIV-GMPGTGKTTTICTLVSTLHLKTCTSCLVDDHREAA 683
Query: 292 VDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR 351
+ + S +N+ + R++ +S S +SK V+ +K L
Sbjct: 684 GTHRSHRHSKGTVNLGKQKRQHRVTSTTSSTSAK--CRSKTEPAVSAENKKLQKLISGSH 741
Query: 352 QCL 354
C+
Sbjct: 742 VCI 744
Score = 48 (22.0 bits), Expect = 2.1e-17, Sum P(3) = 2.1e-17
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 86 GMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHN 133
G HL F+ + +P T L GD V V D A ++ I+ HN
Sbjct: 496 GQHLHSFQRKSG-TVPATNLMSGDRVVVSGEDKFLALSSGYIKEVKHN 542
Score = 38 (18.4 bits), Expect = 5.9e-15, Sum P(2) = 5.9e-15
Identities = 17/72 (23%), Positives = 32/72 (44%)
Query: 264 KTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGN-PARISPAVASK 322
KTG + + + + E + + + + N+V K SD G + + + PA I+ A K
Sbjct: 338 KTGNMYSVPGNRLDRRELLKIRNELSYYLTNVVHK-SDNGSKEITLASLPALIADRQACK 396
Query: 323 SLGEIVKSKLAS 334
++ L S
Sbjct: 397 FCSQMRNCALYS 408
>DICTYBASE|DDB_G0274399 [details] [associations]
symbol:DDB_G0274399 "DNA2/NAM7 helicase family
protein" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR003593 SMART:SM00382
dictyBase:DDB_G0274399 GO:GO:0005524 GO:GO:0005634
EMBL:AAFI02000012 GO:GO:0004386 eggNOG:COG1112 RefSeq:XP_644230.1
ProteinModelPortal:Q86AS0 EnsemblProtists:DDB0237968 GeneID:8619659
KEGG:ddi:DDB_G0274399 OMA:LIMISLH Uniprot:Q86AS0
Length = 967
Score = 247 (92.0 bits), Expect = 3.1e-17, P = 3.1e-17
Identities = 117/407 (28%), Positives = 175/407 (42%)
Query: 281 RVLVTAPTNAAVDNMVEKLSDVGL----------NIVRVGNPARISPAVASKSLGEIVKS 330
R+L+ AP+N AVD +V +L GL N+VRVG P S V S SL +V+
Sbjct: 463 RILLCAPSNGAVDEIVSRLIRDGLLNADGRKYNPNLVRVG-PGSHSD-VESVSLDYMVRC 520
Query: 331 KLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRXXXXXXXXXXXXXXXXXXXXXXSSAQ 390
+ + S + S ++ S
Sbjct: 521 R-----QQLMNSNSAIPSSSASTAAATSGSSRSTQDTSSIRTLVLDEADIVATTLSFSGA 575
Query: 391 VVLATNTGAADPLI-----RRLDTFDLV----G-KRCILAGDQCQLAPVILSRKALEGGI 440
+L G D +I + ++T L+ G K+ +L GD QL I+S A++
Sbjct: 576 SLLTKMAGGFDIVIIDEAAQAVETSTLIPIQHGCKKVVLVGDPKQLPATIISPLAIKYKY 635
Query: 441 GVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFV 500
SL +R L E LTTQYRM+ I ++ S+ Y L+ + S T +
Sbjct: 636 DQSLFQR---LQEKNSPHMLTTQYRMHSLIRAFPSRHFYQDLLLDGPNIPSRA---THYH 689
Query: 501 KPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVS 560
+ PL+ D LS E G GS +NE E ++ ++ +F L V
Sbjct: 690 SNPFFG--PLVFYD-------LSWSTETK---PGGGSVFNEHECKMAMY-LFQLFTK-VY 735
Query: 561 P-----SAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNT 615
P S I + SPY QV LRE + P G+ + T+D FQGRE + +I S VR+
Sbjct: 736 PDEDFASRIGIISPYRQQVLALREIFKNYP---GISIDTVDGFQGREREIIIFSCVRAPV 792
Query: 616 L-GA-VGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRH 660
GA +GFL D RRMNVA+TR + ++ ++ + N L++H
Sbjct: 793 EEGAGIGFLSDVRRMNVALTRPRSSLLILGNTKALSINKDWNELIQH 839
>SGD|S000000978 [details] [associations]
symbol:ECM32 "DNA dependent ATPase/DNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003678
"DNA helicase activity" evidence=IDA] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0006449 "regulation of translational
termination" evidence=IMP] [GO:0005844 "polysome" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] SGD:S000000978 GO:GO:0005524 GO:GO:0005737
GO:GO:0003677 GO:GO:0003723 EMBL:BK006939 GO:GO:0005844
eggNOG:COG1112 GeneTree:ENSGT00700000104467 InterPro:IPR014001
SMART:SM00487 GO:GO:0003678 EMBL:U18922 GO:GO:0003724 PIR:S30862
RefSeq:NP_011103.1 ProteinModelPortal:P32644 SMR:P32644
DIP:DIP-5404N IntAct:P32644 MINT:MINT-499764 STRING:P32644
PaxDb:P32644 PeptideAtlas:P32644 EnsemblFungi:YER176W GeneID:856923
KEGG:sce:YER176W CYGD:YER176w HOGENOM:HOG000094475 OMA:KDTPRGT
OrthoDB:EOG4P8JS8 NextBio:983389 Genevestigator:P32644
GermOnline:YER176W GO:GO:0006449 Uniprot:P32644
Length = 1121
Score = 153 (58.9 bits), Expect = 3.7e-17, Sum P(3) = 3.7e-17
Identities = 31/60 (51%), Positives = 41/60 (68%)
Query: 589 GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
G+ VAT+DSFQG E +I S VR+NT +GFL D RR+NVA+TRA KH +V + +
Sbjct: 1035 GLHVATVDSFQGHEKSFIIFSCVRNNTENKIGFLRDKRRLNVALTRA-KHGLIVVGNKNV 1093
Score = 129 (50.5 bits), Expect = 3.7e-17, Sum P(3) = 3.7e-17
Identities = 33/94 (35%), Positives = 53/94 (56%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGER--VLVTAPTNAAVDNM 295
SQK A+ LN + I+QGPPGTGKT ++EII + +++ +L A +N A+DN+
Sbjct: 652 SQKTAVEHVLNNS--ITILQGPPGTGKTSTIEEIIIQVIERFHAFPILCVAASNIAIDNI 709
Query: 296 VEKLSD--VGLNIVRVGNPARISPAVASKSLGEI 327
EK+ + + I+R+ + + LGEI
Sbjct: 710 AEKIMENRPQIKILRILSKKKEQQYSDDHPLGEI 743
Score = 66 (28.3 bits), Expect = 3.7e-17, Sum P(3) = 3.7e-17
Identities = 55/196 (28%), Positives = 78/196 (39%)
Query: 394 ATNTGAADPLIRRLDTFDLVGKR-CILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
AT + A L+ L G R + GD+ QL+ + LE SL ER L
Sbjct: 822 ATQSSEASTLV----PLSLPGIRNFVFVGDEKQLSS-FSNIPQLE----TSLFERV--LS 870
Query: 453 EGVLATKLT--TQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVK-PTWITQCP 509
G L TQYRM+ I+ + K++Y G L T P V+ P + QC
Sbjct: 871 NGTYKNPLMLDTQYRMHPKISEFPIKKIYNGELKDGVTDEQKAW---PGVQHPLFFYQCD 927
Query: 510 LLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSP-SAIAVQS 568
L G S D+ G ++ N+ E +V + L+ P I V +
Sbjct: 928 L---------GPESRVRSTQRDIVGF-TYENKHECVEIVKIIQILMLDKKVPLEEIGVIT 977
Query: 569 PYVAQVQHLRERLDDL 584
PY AQ R+ L D+
Sbjct: 978 PYSAQ----RDLLSDI 989
>ZFIN|ZDB-GENE-070402-1 [details] [associations]
symbol:setx "senataxin" species:7955 "Danio rerio"
[GO:0006302 "double-strand break repair" evidence=IEA]
InterPro:IPR026121 ZFIN:ZDB-GENE-070402-1 GO:GO:0006302
InterPro:IPR024481 Pfam:PF12726 GeneTree:ENSGT00580000081652
PANTHER:PTHR10887:SF15 EMBL:CU927918 IPI:IPI00481119
Ensembl:ENSDART00000082314 Ensembl:ENSDART00000149777
Uniprot:E7FBJ2
Length = 2368
Score = 218 (81.8 bits), Expect = 4.1e-17, Sum P(3) = 4.1e-17
Identities = 76/232 (32%), Positives = 113/232 (48%)
Query: 416 RC---ILAGDQCQLAPVILSRKALEGGIGVSLLERAA-TLHEGVLATK----LTTQYRMN 467
RC IL GD QL P ++S+KA E G SL+ R +LH L+ QYRM+
Sbjct: 1978 RCPSVILVGDPNQLPPTVVSQKAKEFGFDQSLMARLCKSLHPSNSKLPPILLLSMQYRMH 2037
Query: 468 DAIASWASKEMYGGSLISS-STVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGC 526
I + SK +Y +L + T + PF KP + ++D R
Sbjct: 2038 PDICEFPSKYIYNSALKNDCETAQKRCSLSWPF-KPYKVFD----VMDGR---------- 2082
Query: 527 EEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERL--DDL 584
+ SF N E +V + L+C + + V +PY AQ + + + +
Sbjct: 2083 ----ETKERDSFINHKEVSLV-GLLLKLLCKEQAVR-VGVITPYNAQKHRILDAIKTSGI 2136
Query: 585 PEAAGVEVATIDSFQGREADAVIISMVR-SNTLGAVGFLGDSRRMNVAITRA 635
+ VEV T+D FQGRE D +I+S VR S+ +G++GF+G+ +RMNV ITRA
Sbjct: 2137 NKQLQVEVDTVDGFQGREMDCIIVSCVRASSEMGSIGFVGNRQRMNVTITRA 2188
Score = 92 (37.4 bits), Expect = 4.1e-17, Sum P(3) = 4.1e-17
Identities = 35/115 (30%), Positives = 57/115 (49%)
Query: 249 KKRPLLIIQGPPGTGKT----GLLKEIIARAVQQGE------------RVLVTAPTNAAV 292
K L+I GPPGTGK+ GLL ++++ A RVL+ AP+NAA+
Sbjct: 1735 KTPKFLLIHGPPGTGKSKTIGGLLYKLLSSATNSSATVGNLHSKSRRTRVLLCAPSNAAI 1794
Query: 293 DNMVEKL---------------SDVG-LNIVRVGNPARISPAVASKSLGEIVKSK 331
D++++K+ + G +N+VR+GN IS ++ SL K++
Sbjct: 1795 DSLMKKVILIFKEKCRNINAPQGNCGDINLVRLGNERTISKSLKPFSLDHQTKAR 1849
Score = 45 (20.9 bits), Expect = 4.1e-17, Sum P(3) = 4.1e-17
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 91 LFRVEGNHRLPPTTLSPGDM---VCVRVCD 117
++ +EG+H P SP D+ + + +C+
Sbjct: 93 IYIIEGDHEQPVLKFSPSDIHDRIFIPLCE 122
Score = 44 (20.5 bits), Expect = 5.2e-17, Sum P(3) = 5.2e-17
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 9 IQSRLDEFTQRMSELLRIERD-AELEFTQEELNAVPTPDENSDSSKP 54
I S+++EF EL +RD +++ + + P + +D + P
Sbjct: 1287 ICSQMEEFEDENDELFLTQRDPVDMDIDTDSGSDTPGQPDFTDKNVP 1333
>POMBASE|SPBC29A10.10c [details] [associations]
symbol:SPBC29A10.10c "tRNA-splicing endonuclease
positive effector (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=ISO] [GO:0016180 "snRNA processing" evidence=ISO]
[GO:0035649 "Nrd1 complex" evidence=ISO] [GO:0043144 "snoRNA
processing" evidence=ISO] InterPro:IPR024714 PomBase:SPBC29A10.10c
GO:GO:0005524 GO:GO:0005634 EMBL:CU329671 GO:GO:0008033
eggNOG:COG1112 GO:GO:0006364 GO:GO:0004004 GO:GO:0006369
GO:GO:0043144 GO:GO:0016180 KO:K10706 GO:GO:0035649
InterPro:IPR024481 PANTHER:PTHR10887:SF164 Pfam:PF12726
OrthoDB:EOG4MPMZ6 PIR:T40065 RefSeq:NP_596055.1
ProteinModelPortal:O94387 EnsemblFungi:SPBC29A10.10c.1
GeneID:2540523 KEGG:spo:SPBC29A10.10c NextBio:20801650
Uniprot:O94387
Length = 1944
Score = 232 (86.7 bits), Expect = 4.5e-17, Sum P(3) = 4.5e-17
Identities = 80/269 (29%), Positives = 124/269 (46%)
Query: 417 CILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASK 476
C++ GD QL P +LS+ + + G SL R H A L+ QYRMN I+ + SK
Sbjct: 1537 CVMVGDPNQLPPTVLSKTSAKFGYSQSLYVRMFKQHNES-ACLLSIQYRMNPEISRFPSK 1595
Query: 477 EMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSL-GCEEHLDLAGT 535
Y L+ +++ + P W + P L + Y ++ G E + +
Sbjct: 1596 FFYNSKLLDGPNMSA--VTSRP-----W-HEDPQLGI-----YRFFNVHGTEA---FSNS 1639
Query: 536 GSFYNEGEAEIVVHHVFSLI-C-AGVS-PSAIAVQSPYVAQVQHLRERLDDLPEAA---G 589
S YN EA ++ LI C + I V +PY +QVQ LR + +
Sbjct: 1640 KSLYNVEEASFILLLYERLIQCYLNIDFEGKIGVVTPYRSQVQQLRSQFQRKYGSIIFKH 1699
Query: 590 VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTIC 649
+++ T+D FQG+E D +I S VRS+ G +GFL D RR+NVA+TRA + +V +S +
Sbjct: 1700 LDIHTVDGFQGQEKDIIIFSCVRSSMSGGIGFLQDLRRLNVALTRAKSSLYIVGNSKPLM 1759
Query: 650 HNTFLARLLRHIRYFGRVKHAEPGSFGGS 678
L+ + G + F S
Sbjct: 1760 QEDIFYSLIEDAKTRGVWRDLSANQFKNS 1788
Score = 67 (28.6 bits), Expect = 4.5e-17, Sum P(3) = 4.5e-17
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 220 ADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRP-LLIIQGPPGTGKT----GLLKEIIAR 274
+++++ K IM K++ ++ +A A+ + +IQGPPGTGKT G++ ++
Sbjct: 1255 SNFTDDKKQKIM-KSYGVNEPQAYAIYASSVNDGFTLIQGPPGTGKTKTILGMIGAVLTS 1313
Query: 275 AVQQGERVLVTAPTNAAVDNMV 296
+ QG + V T N +
Sbjct: 1314 S-SQGLQFNVPGQTRKTSKNKI 1334
Score = 58 (25.5 bits), Expect = 3.8e-16, Sum P(3) = 3.8e-16
Identities = 33/129 (25%), Positives = 59/129 (45%)
Query: 246 GLNKKRPLLIIQGPPGTGKT-GLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLS--- 300
G K + +L + G T + GL + + + + ++L+ AP+NAA+D ++ ++
Sbjct: 1296 GTGKTKTILGMIGAVLTSSSQGLQFNVPGQTRKTSKNKILICAPSNAAIDEILLRIKAGV 1355
Query: 301 --DVGLN----IVRVGNPARISPAVASKSLGE--IVKSKLASFVAEFE-RKKSDLRKDLR 351
G+ ++RVG IS +L E I + +L + + E SD RK
Sbjct: 1356 YDHEGIKFFPKVIRVGFGDSISVHAKEFTLEEQMIKQMELTNLKKDQEANNSSDTRKKYD 1415
Query: 352 QCLKD-DSL 359
+K DSL
Sbjct: 1416 SIIKKRDSL 1424
Score = 52 (23.4 bits), Expect = 4.5e-17, Sum P(3) = 4.5e-17
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 4 ERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNA---VPTPDENSDSSKPI 55
+ + ++S+ E TQR+ E ++ R + E+LN+ +P + DS+ PI
Sbjct: 909 QNLNFLKSK-QETTQRIRESAKVPRTSAGNHLSEKLNSDNHIPKALQKLDSADPI 962
Score = 40 (19.1 bits), Expect = 7.7e-16, Sum P(3) = 7.7e-16
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 87 MHLVLFRVEGNHRLPPTTLSPGDMVCVRVC 116
+HL L + N + P P V VR C
Sbjct: 30 LHLALSYLNTNRQNPHWVCDPKLQVAVREC 59
>CGD|CAL0001700 [details] [associations]
symbol:orf19.702 species:5476 "Candida albicans" [GO:0003678
"DNA helicase activity" evidence=IEA] [GO:0005844 "polysome"
evidence=IEA] [GO:0006449 "regulation of translational termination"
evidence=IEA] InterPro:IPR003593 InterPro:IPR007087
InterPro:IPR015880 PROSITE:PS00028 PROSITE:PS50157 SMART:SM00355
SMART:SM00382 CGD:CAL0001700 GO:GO:0005524 GO:GO:0008270
GO:GO:0005622 GO:GO:0017111 eggNOG:COG1112 EMBL:AACQ01000183
EMBL:AACQ01000182 RefSeq:XP_711775.1 RefSeq:XP_711793.1
ProteinModelPortal:Q59PZ8 GeneID:3646609 GeneID:3646623
KEGG:cal:CaO19.702 KEGG:cal:CaO19.8321 Uniprot:Q59PZ8
Length = 1105
Score = 161 (61.7 bits), Expect = 4.7e-17, Sum P(2) = 4.7e-17
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 588 AGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSST 647
+G+ +A+ID+FQGRE D +I+S VRSNT G +GFL D RR+NVA+TRA + +V D
Sbjct: 1017 SGIMIASIDAFQGREKDYMIMSCVRSNTKGVIGFLRDERRLNVALTRAKYGLIMVGDKKC 1076
Query: 648 I 648
+
Sbjct: 1077 L 1077
Score = 139 (54.0 bits), Expect = 4.7e-17, Sum P(2) = 4.7e-17
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGER--VLVTAPTN 289
G+ ++SQKK + LN + ++QGPPGTGKT + EII + + +LV A +N
Sbjct: 637 GQNLNESQKKGVQSVLNNS--ITVLQGPPGTGKTSTIYEIILQLLDSLNTYPILVVAASN 694
Query: 290 AAVDNMVEKL-SDVGLNIVRV 309
A+DN+ EKL + G +I+R+
Sbjct: 695 IAIDNIAEKLMTKHGKDILRI 715
Score = 94 (38.1 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 56/218 (25%), Positives = 90/218 (41%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATK--LTTQYRMNDAIAS 472
++ +L GDQ QL S +L + +SL ER L G T L TQYRM+ I+
Sbjct: 830 EKLVLVGDQKQL-----SCFSLIPNLSLSLFERV--LLNGTYKTPHMLDTQYRMHPEISE 882
Query: 473 WASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDL 532
+ + YGG L +D + + PL DT+ S+ L
Sbjct: 883 FPRTKFYGGLLKDG--------IDANARQSEGVISSPLYFWDTKGNAREQSV--RNFLRE 932
Query: 533 AGTGSFYNEGEAEIVVHHVFSLICA-GVSPSAIAVQSPYVAQVQHLRERL--DDLPEAAG 589
G ++ N E + + +LI GV P I + +PY Q + L DD+ +
Sbjct: 933 DGGYTYTNRDEIGYIQQVLRTLIITKGVKPEQIGIITPYSGQRDLISATLVKDDVINPSN 992
Query: 590 VEVAT---IDSFQGREADAVIISMVRSNTLGAV-GFLG 623
++ T ID + ++ V I +V + ++ F G
Sbjct: 993 EQMKTEVDIDDLKN-DSKPVTIHIVSGIMIASIDAFQG 1029
>RGD|2322000 [details] [associations]
symbol:LOC100363957 "hypothetical protein LOC100363957"
species:10116 "Rattus norvegicus" [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR010666 Pfam:PF06839 RGD:2322000
GO:GO:0008270 GeneTree:ENSGT00550000074391 IPI:IPI00777941
Ensembl:ENSRNOT00000014695 Uniprot:F1M404
Length = 919
Score = 222 (83.2 bits), Expect = 6.6e-17, Sum P(2) = 6.6e-17
Identities = 78/263 (29%), Positives = 126/263 (47%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
++ IL GD QL P I A G G+ G +L TQYR + I++ A
Sbjct: 646 EKLILVGDPKQLPPTIQGSDAAHGN-GLEQTLFDRLCLMGHKPIQLRTQYRCHPVISAIA 704
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAG 534
+ Y G+L++ + +P ++ W+ P L Y G E+ +
Sbjct: 705 NDLFYEGNLVNGISERER----SPVLE--WL---PTLCF-----YNVT--GTEQ---VER 745
Query: 535 TGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD----DLPEAAGV 590
SF N EA + + SLI +G+ S I V + Y +Q+ + L D P+ V
Sbjct: 746 ENSFVNVAEAAFTLKLIRSLIASGLEGSMIGVITLYKSQMYKICSLLSAVDVDHPDVKAV 805
Query: 591 EVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICH 650
EV+T+D+FQG E + +I+S VR+ VGF+ +RMNVA+TR +H+ ++ S +
Sbjct: 806 EVSTVDAFQGAEKEIIILSCVRTRQ---VGFIDSEKRMNVALTRGRRHLLIIGSLSCLRK 862
Query: 651 NTFLARLLRHIRYFGR---VKHA 670
N R+++H + GR ++HA
Sbjct: 863 NQLWGRVIQHCK--GREDGLQHA 883
Score = 72 (30.4 bits), Expect = 6.6e-17, Sum P(2) = 6.6e-17
Identities = 26/87 (29%), Positives = 43/87 (49%)
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGER-------------VLVTAPTNAAVDNMVEK 298
P+ +I G G GK+ LL +I V+ E+ +L+++ TN AVD ++
Sbjct: 465 PITVIHGVFGAGKSYLLAVVILFLVELFEKCDSEAVGRARPWKLLISSSTNVAVDRVLLG 524
Query: 299 LSDVGLN-IVRVGNPARISPAVASKSL 324
L +G +RVG+ +I+ V SL
Sbjct: 525 LLSLGFEKFIRVGSVRKIAKPVLPYSL 551
>DICTYBASE|DDB_G0268662 [details] [associations]
symbol:DDB_G0268662 "DNA2/NAM7 helicase family
protein" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR003593 SMART:SM00382 dictyBase:DDB_G0268662
Pfam:PF03828 GO:GO:0005524 EMBL:AAFI02000004 GO:GO:0004386
eggNOG:COG1112 InterPro:IPR002058 ProtClustDB:CLSZ2429765
RefSeq:XP_646848.1 ProteinModelPortal:Q55F22
EnsemblProtists:DDB0304624 GeneID:8616531 KEGG:ddi:DDB_G0268662
InParanoid:Q55F22 Uniprot:Q55F22
Length = 2523
Score = 209 (78.6 bits), Expect = 7.2e-17, Sum P(3) = 7.2e-17
Identities = 69/236 (29%), Positives = 109/236 (46%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
++ IL GD QL P I S ++ + G+ +SL ER L + + L TQYRM+ I+ +
Sbjct: 1756 EKLILVGDPLQLPPTIFSSESAKNGLNISLFER---LSKVLPVEMLNTQYRMHPTISRFP 1812
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAG 534
S + Y L+ V S + F I P+ D + +E +G
Sbjct: 1813 SNQFYKDRLLDGDNVKSLVYNQHNFHSD--IKYGPIRFYDV--------IDSKEE---SG 1859
Query: 535 TGSFYNEGEAEIVVHHVFSLI--CAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEV 592
S N+ E +V + L+ + + +PY Q ++E+ +E
Sbjct: 1860 KRSLKNKLEITMVFTLIKKLVQDYPECKKFSFGIITPYKLQKSEIKEQHKQFNYPLNIET 1919
Query: 593 ATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
+TID QG E D +I+S VRS +GFL D RR+NVA+TRA + V+ +S +
Sbjct: 1920 STIDGVQGSEKDIIILSCVRSER---IGFLSDRRRINVALTRAKFGLFVIGNSKLL 1972
Score = 105 (42.0 bits), Expect = 7.2e-17, Sum P(3) = 7.2e-17
Identities = 32/92 (34%), Positives = 51/92 (55%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIA--RAVQQGERVLVTAPTNAAVDNM 295
SQ A+ L+ K + +IQGPPGTGKT + +++ A+ ++LV P++A+VD +
Sbjct: 1597 SQFSAVETSLSTKG-ITLIQGPPGTGKTTTIYYLLSILLAINPKFKILVCGPSHASVDEV 1655
Query: 296 VE---KLSDVGL-------NIVRVGNPARISP 317
+ K S V + N+VR+G ISP
Sbjct: 1656 AKRCLKKSLVNIDGKPYLPNMVRIGKLQNISP 1687
Score = 47 (21.6 bits), Expect = 5.7e-11, Sum P(3) = 5.7e-11
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 224 EVKLDGIM-GKTFDDSQKKAIALGL 247
E+ L+ I+ KTFD + K ALGL
Sbjct: 1464 EIYLNDILLFKTFDHTSKPMFALGL 1488
Score = 40 (19.1 bits), Expect = 7.2e-17, Sum P(3) = 7.2e-17
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 35 TQEELNAVPTPDENSDSSKPIE 56
T +++ VP+P N++++ E
Sbjct: 1094 TTSQISIVPSPSSNNNTTTTFE 1115
>UNIPROTKB|F1PCI1 [details] [associations]
symbol:C4orf21 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR010666 Pfam:PF06839 GO:GO:0008270
GeneTree:ENSGT00550000074391 OMA:HKLGTNK EMBL:AAEX03016829
Ensembl:ENSCAFT00000018553 Uniprot:F1PCI1
Length = 1024
Score = 218 (81.8 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 74/250 (29%), Positives = 121/250 (48%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
++ IL GD QL+P I A G+ G L TQYR + AI+ +
Sbjct: 750 EKLILVGDPKQLSPTIQGSDAAHEN-GLEQTLFDRLCLMGHKPVLLRTQYRCHPAISDIS 808
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAG 534
+ Y G+L+ + P ++ W+ P L Y G E+ +
Sbjct: 809 NDLFYEGNLVDGISETER----GPLLE--WL---PTLCF-----YNIK--GPEQ---IER 849
Query: 535 TGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQ---HLRERLD-DLPEAAGV 590
SF+N EA + + SLI +G++ S I V + Y +Q+ HL +D D P+ V
Sbjct: 850 DNSFHNVAEAAFTLKLIQSLIASGIAGSMIGVITLYKSQMYKLCHLLSAVDFDNPDIKAV 909
Query: 591 EVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICH 650
+V+T+D+FQG E + +I+S VR+ VGF+ +RMNVA+TR +H+ +V + + +
Sbjct: 910 QVSTVDAFQGAEKEIIILSCVRTRQ---VGFIDSEKRMNVALTRGRRHLLIVGNLACLRK 966
Query: 651 NTFLARLLRH 660
N R+++H
Sbjct: 967 NRLWGRVIQH 976
Score = 75 (31.5 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 28/87 (32%), Positives = 43/87 (49%)
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGER-------------VLVTAPTNAAVDNMVEK 298
P+ II G G GK+ LL +I VQ E+ +L+++ TN AVD ++
Sbjct: 569 PITIIHGVFGAGKSYLLAVVILFFVQLFEKSEVLTVGNVRPWKLLISSSTNVAVDRVLLG 628
Query: 299 LSDVGLN-IVRVGNPARISPAVASKSL 324
L +G VRVG+ +I+ + SL
Sbjct: 629 LLSLGFEKFVRVGSVRKIAKPILPYSL 655
Score = 37 (18.1 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 306 IVRVGNPARISPAV 319
++ VG+P ++SP +
Sbjct: 752 LILVGDPKQLSPTI 765
>TAIR|locus:2152627 [details] [associations]
symbol:AT5G37030 species:3702 "Arabidopsis thaliana"
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM] EMBL:CP002688 GO:GO:0004519 KO:K10706
IPI:IPI00540124 RefSeq:NP_198519.1 UniGene:At.55172
ProteinModelPortal:F4K5V7 SMR:F4K5V7 PRIDE:F4K5V7
EnsemblPlants:AT5G37030.1 GeneID:833673 KEGG:ath:AT5G37030
Uniprot:F4K5V7
Length = 638
Score = 224 (83.9 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 71/243 (29%), Positives = 118/243 (48%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL-HEGVLATKLTTQYRMNDAIASW 473
+ IL GD+ QL ++ + + + G SL ER L H+ L L QYRM+ +I+ +
Sbjct: 374 RHAILIGDEFQLPAMVHNDQCEKAKFGRSLFERLVLLGHKKHL---LDVQYRMHPSISRF 430
Query: 474 ASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLA 533
KE YGG + ++ V + F++ + ++ G EE D
Sbjct: 431 PYKEFYGGRIKDAANVQESIY-QKRFLQGNMFGSFSFI---------NVGRGKEEFGDGD 480
Query: 534 GTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERL-DDLPEAAG--- 589
+ ++ ++F + ++ V +PY QV+ ++ER+ D +G
Sbjct: 481 SPKNMVEVAVVSEIISNLFKVSRERKMKMSVGVITPYKGQVRAIQERIRDKYSSLSGELF 540
Query: 590 -VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
V V ++D FQG E D +IIS VRSN+ G VGFL + +R NVA+TRA + V+ + ST+
Sbjct: 541 TVNVRSVDGFQGGEEDIIIISTVRSNSNGKVGFLSNRQRANVALTRARHCLWVIGNESTL 600
Query: 649 CHN 651
+
Sbjct: 601 ARS 603
Score = 62 (26.9 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 23/83 (27%), Positives = 38/83 (45%)
Query: 222 WSEVKLDGIMGKTFDDSQKKAIALGL-----NKKRPLLIIQGPPGTGKTGLLKEIIARAV 276
W + LD I + SQ+ AI L N K + +I GP KT + ++ +
Sbjct: 191 WGQNVLDIIRSSKLNSSQEAAILSCLETRDSNHKNSVKLIWGPL---KTKTVATLLLVLL 247
Query: 277 QQGERVLVTAPTNAAVDNMVEKL 299
+ + +V APTN A+ + +L
Sbjct: 248 KLRCKTVVCAPTNTAIVEVTSRL 270
>UNIPROTKB|E1C4T7 [details] [associations]
symbol:Gga.18015 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IEA] [GO:0007623 "circadian rhythm"
evidence=IEA] InterPro:IPR026121 GO:GO:0005737 GO:GO:0005654
GO:GO:0006302 GeneTree:ENSGT00580000081652 OMA:RLINHFE
PANTHER:PTHR10887:SF15 EMBL:AADN02026516 IPI:IPI00575045
Ensembl:ENSGALT00000005801 Uniprot:E1C4T7
Length = 2503
Score = 212 (79.7 bits), Expect = 1.4e-16, Sum P(3) = 1.4e-16
Identities = 85/287 (29%), Positives = 134/287 (46%)
Query: 416 RCILAGDQCQLAPVILSRKALEGGIGVSLLERAAT-LHEGVL--------ATKLTTQYRM 466
+ +L GD QL P I S KA E G G SL+ R L E V +LT QYRM
Sbjct: 2224 KLVLVGDPRQLPPTIKSIKAQEYGYGQSLMARLQRHLEEQVQNNLLRRLPVVQLTVQYRM 2283
Query: 467 NDAIASWASKEMYGGSL-ISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
+ I + S +Y +L +T + + PF P L+ D G G
Sbjct: 2284 HPDICLFPSSYIYDKTLKTDKATEENRCSSEWPFQ--------PYLVFDV----GD---G 2328
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLI--CAGVSPSAIAVQSPYVAQVQHLRERLDD 583
EE SF N E ++V+ + ++ + I + +PY AQ + ++E LD
Sbjct: 2329 HEER----DKDSFSNPQEVKLVLEIIRTIKEKRKDLGLRRIGIITPYSAQKKKIQEELDR 2384
Query: 584 L--PEAAGVEVATIDSFQGREADAVIISMVRSNTL-GAVGFLGDSRRMNVAITRACKHVA 640
+ + G EV T+D+FQGRE D +I++ VR+N+ G++GFL +R+NV ITRA +
Sbjct: 2385 VFKNNSPG-EVDTVDAFQGREKDCIIVTCVRANSSKGSIGFLASLQRLNVTITRARFSLF 2443
Query: 641 VVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGGSGLGMDPMLP 687
++ T+ N +L++ + G + S+ L + + P
Sbjct: 2444 ILGRLKTLMENKDWNKLIQDAQRRGAIIKTSDKSYKKDALKILKLKP 2490
Score = 94 (38.1 bits), Expect = 1.4e-16, Sum P(3) = 1.4e-16
Identities = 26/86 (30%), Positives = 48/86 (55%)
Query: 235 FDDSQKKAI--ALGLNKKRP----LLIIQGPPGTGKTGLLKEIIARAVQQG--------- 279
+++ QK+AI A + K+ P + +I GPPGTGK+ + +++R +++
Sbjct: 1958 YNEDQKRAIETAYAMVKQHPGLAKICLIHGPPGTGKSKTIVGLLSRVLRENTRNEKTSKK 2017
Query: 280 ------ERVLVTAPTNAAVDNMVEKL 299
R LV AP+NAA+D +++K+
Sbjct: 2018 NAKIKQNRFLVCAPSNAAIDELMKKI 2043
Score = 45 (20.9 bits), Expect = 1.4e-16, Sum P(3) = 1.4e-16
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 45 PDENSDSSKPIEFLVSHGRAPQELC 69
PDENSD + FL ELC
Sbjct: 1509 PDENSDDDDNL-FLTQLDPVDMELC 1532
Score = 42 (19.8 bits), Expect = 2.8e-16, Sum P(3) = 2.8e-16
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 130 FVHNLGEDGCTISVALESRH 149
F+ GEDGC ++ R+
Sbjct: 644 FISKEGEDGCCQEISFTGRN 663
>UNIPROTKB|F1PHA4 [details] [associations]
symbol:SETX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006302 "double-strand break repair"
evidence=IEA] InterPro:IPR026121 GO:GO:0006302
GeneTree:ENSGT00580000081652 OMA:RLINHFE PANTHER:PTHR10887:SF15
EMBL:AAEX03006816 EMBL:AAEX03006817 Ensembl:ENSCAFT00000031656
Uniprot:F1PHA4
Length = 2531
Score = 205 (77.2 bits), Expect = 1.5e-16, Sum P(4) = 1.5e-16
Identities = 83/267 (31%), Positives = 126/267 (47%)
Query: 416 RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHE--------GVLAT-KLTTQYRM 466
+ IL GD QL P ++S KA E G S++ R L E G L +LT QYRM
Sbjct: 2224 KLILVGDPKQLPPTVISMKAQEYGYDQSMMARFYKLLEDNVEHNMIGRLPVLQLTVQYRM 2283
Query: 467 NDAIASWASKEMYGGSLISS-STVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
+ I + S +Y SL ++ T + D PF P L+ D G S
Sbjct: 2284 HPDICLFPSNYVYNRSLKTNRQTETNRCSSDWPFQ--------PYLVFDV----GDGS-- 2329
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC---AGVSPSAIAVQSPYVAQVQHLRERLD 582
E D S+ N E ++V+ + LI V+ I + + Y AQ +++ LD
Sbjct: 2330 --ERRD---NDSYVNVQEIKLVME-IIKLIKDKRRDVTFRNIGIITHYKAQKTMIQKDLD 2383
Query: 583 DLPEAAG-VEVATIDSFQGREADAVIISMVRSNTL-GAVGFLGDSRRMNVAITRACKHVA 640
+ G EV T+D FQGR+ D VI++ VR+N + G++GFL +R+NV ITRA +
Sbjct: 2384 KEFDRKGPAEVDTVDGFQGRQKDCVIVTCVRANAMQGSIGFLASLQRLNVTITRAKYSLF 2443
Query: 641 VVCDSSTICHNTFLARLLRHIRYFGRV 667
++ T+ N L++ + G +
Sbjct: 2444 ILGHLRTLMENQHWNHLIQDAQKRGAI 2470
Score = 87 (35.7 bits), Expect = 1.5e-16, Sum P(4) = 1.5e-16
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 253 LLIIQGPPGTGKT----GLLKEIIARAVQQGE------------RVLVTAPTNAAVDNMV 296
+ +I GPPGTGK+ GLL ++ ++G RVLV AP+NAAVD ++
Sbjct: 1981 ICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDENSNAKIKQNRVLVCAPSNAAVDELM 2040
Query: 297 EKL 299
+K+
Sbjct: 2041 KKI 2043
Score = 60 (26.2 bits), Expect = 1.5e-16, Sum P(4) = 1.5e-16
Identities = 23/71 (32%), Positives = 33/71 (46%)
Query: 299 LSDVG-LNIVRVGNPARISPAVASKSLGEIV----KSKLASFVAEFERKKSDLRKDLRQC 353
L + G +N+VR+G I+ V SL V K L S V E R+K L + L +
Sbjct: 2058 LGNCGDINLVRLGPEKSINNEVLKFSLDSQVNHRMKKDLPSHVQEMHRRKEFLDRQLDEL 2117
Query: 354 LKDDSLAAGIR 364
+ +L G R
Sbjct: 2118 SRQRALCRGGR 2128
Score = 45 (20.9 bits), Expect = 1.5e-16, Sum P(4) = 1.5e-16
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 45 PDENSDSSKPIEFLVSHGRAPQELCDTICN 74
P+ NSD+ FL H +LC + N
Sbjct: 1507 PEYNSDTEDENIFLTQHHPEDMDLCSQMEN 1536
Score = 42 (19.8 bits), Expect = 2.9e-16, Sum P(4) = 2.9e-16
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 7 KTIQSRLDEFTQRMSELLRIERDAELEF-TQEELNAVPTPDENSDSSKP 54
K + S+ +F ++M + + L++ ++E A P P +NSD P
Sbjct: 1363 KLLTSQDLQFRRQMRPKSQQNKKGLLDYESKETTRAGPRPAQNSDILVP 1411
>UNIPROTKB|F1S0U6 [details] [associations]
symbol:SETX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0007623 "circadian rhythm" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
InterPro:IPR026121 GO:GO:0005737 GO:GO:0005654 GO:GO:0006302
KO:K10706 GeneTree:ENSGT00580000081652 CTD:23064 OMA:RLINHFE
PANTHER:PTHR10887:SF15 EMBL:CU550727 EMBL:CU914573
RefSeq:XP_003353743.1 UniGene:Ssc.45527 Ensembl:ENSSSCT00000006294
GeneID:100511239 KEGG:ssc:100511239 Uniprot:F1S0U6
Length = 2661
Score = 200 (75.5 bits), Expect = 3.9e-16, Sum P(3) = 3.9e-16
Identities = 82/267 (30%), Positives = 127/267 (47%)
Query: 416 RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHE-----GVLAT----KLTTQYRM 466
+ +L GD QL P ++S KA + G S++ R L E V+ +LT QYRM
Sbjct: 2195 KLVLVGDPKQLPPTVISMKAQDYGYDQSMMARFYKLLEENVEHNVIGRLPILQLTVQYRM 2254
Query: 467 NDAIASWASKEMYGGSLISSS-TVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
+ I + S +Y +L ++S T AS D PF P L+ D G S
Sbjct: 2255 HPDICLFPSNYIYNRNLKTNSLTEASRCSSDWPFQ--------PYLVFDV----GDGS-- 2300
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC---AGVSPSAIAVQSPYVAQVQHLRERLD 582
E D S+ N E ++V+ + LI V+ I + + Y AQ +++ LD
Sbjct: 2301 --ERRD---NDSYVNVQEIKLVME-IIKLIKDKRRDVTFRNIGIITHYKAQKTLIQKDLD 2354
Query: 583 DLPEAAG-VEVATIDSFQGREADAVIISMVRSNTL-GAVGFLGDSRRMNVAITRACKHVA 640
+ G EV T+D FQGR+ D VI++ VR+ T G++GFL +R+NV ITRA +
Sbjct: 2355 KEFDRKGPAEVDTVDGFQGRQKDCVIVTCVRAKTSQGSIGFLASLQRLNVTITRAKYSLF 2414
Query: 641 VVCDSSTICHNTFLARLLRHIRYFGRV 667
++ T+ N +L+ + G +
Sbjct: 2415 ILGHLRTLRENDHWNQLIEDAQKRGAI 2441
Score = 88 (36.0 bits), Expect = 3.9e-16, Sum P(3) = 3.9e-16
Identities = 49/184 (26%), Positives = 82/184 (44%)
Query: 135 GEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQ-KNGLHK 193
G+ C++S+ + + P F K V I + +T +R +A+ LL +N L +
Sbjct: 1847 GKSECSLSIQTQDKL--PVNLNEFVKCVVISSL------VTTQRKLKAMSLLSGRNQLAR 1898
Query: 194 R--NPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKR 251
NP+ T K+ +T E +A + D K + + A+
Sbjct: 1899 AILNPNPMDFCT----KDLLTTTSERIIAYLRDFNED--QKKAIETAY--AMVKHSPSVA 1950
Query: 252 PLLIIQGPPGTGKT----GLLKEIIARAVQQGE------------RVLVTAPTNAAVDNM 295
+ +I GPPGTGK+ GLL ++ ++G RVLV AP+NAAVD +
Sbjct: 1951 KICLIHGPPGTGKSKTIVGLLYRLLTENQRRGHSDENSNAKIKQNRVLVCAPSNAAVDEL 2010
Query: 296 VEKL 299
++K+
Sbjct: 2011 MKKI 2014
Score = 60 (26.2 bits), Expect = 3.9e-16, Sum P(3) = 3.9e-16
Identities = 23/71 (32%), Positives = 33/71 (46%)
Query: 299 LSDVG-LNIVRVGNPARISPAVASKSLGEIV----KSKLASFVAEFERKKSDLRKDLRQC 353
L + G +N+VR+G I+ V SL V K L S+V E R+K L L +
Sbjct: 2029 LGNCGDINLVRLGPEKSINNEVLRFSLDSQVNHRMKKDLPSYVQEMHRRKEFLDHQLDEL 2088
Query: 354 LKDDSLAAGIR 364
+ +L G R
Sbjct: 2089 SRQRALCRGGR 2099
Score = 37 (18.1 bits), Expect = 8.6e-14, Sum P(3) = 8.6e-14
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 306 IVRVGNPARISPAVAS 321
+V VG+P ++ P V S
Sbjct: 2196 LVLVGDPKQLPPTVIS 2211
Score = 37 (18.1 bits), Expect = 8.6e-14, Sum P(3) = 8.6e-14
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 328 VKSKLASFVAEFERKKSDLRKDLRQC 353
V + + EF+ K D R L C
Sbjct: 2007 VDELMKKIILEFKEKCKDKRNPLGNC 2032
>POMBASE|SPAC6G9.10c [details] [associations]
symbol:sen1 "ATP-dependent 5' to 3' DNA/RNA helicase
Sen1" species:4896 "Schizosaccharomyces pombe" [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006364 "rRNA processing" evidence=ISO] [GO:0006369
"termination of RNA polymerase II transcription" evidence=ISO]
[GO:0008033 "tRNA processing" evidence=ISO] [GO:0008094
"DNA-dependent ATPase activity" evidence=IDA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IDA] [GO:0016180 "snRNA
processing" evidence=ISO] [GO:0032575 "ATP-dependent 5'-3' RNA
helicase activity" evidence=IDA] [GO:0035649 "Nrd1 complex"
evidence=ISO] [GO:0043141 "ATP-dependent 5'-3' DNA helicase
activity" evidence=IDA] [GO:0043144 "snoRNA processing"
evidence=ISO] InterPro:IPR024714 PomBase:SPAC6G9.10c GO:GO:0005524
GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006397
GO:GO:0008033 eggNOG:COG1112 GO:GO:0006364 GO:GO:0006369
GO:GO:0043144 GO:GO:0043141 GO:GO:0016180 KO:K10706 GO:GO:0035649
PIR:T39072 RefSeq:NP_594119.1 ProteinModelPortal:Q92355
EnsemblFungi:SPAC6G9.10c.1 GeneID:2541556 KEGG:spo:SPAC6G9.10c
OrthoDB:EOG4BCHWF NextBio:20802652 GO:GO:0032575 InterPro:IPR024481
PANTHER:PTHR10887:SF164 Pfam:PF12726 Uniprot:Q92355
Length = 1687
Score = 219 (82.2 bits), Expect = 4.4e-16, Sum P(3) = 4.4e-16
Identities = 76/240 (31%), Positives = 112/240 (46%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
K+CIL GD QL P +LS+KA SL R + L+ QYRM+ I+ +
Sbjct: 1397 KKCILVGDPNQLPPTVLSKKAASLNYSQSLFVRIQKNFSNQMCL-LSIQYRMHPDISHFP 1455
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAG 534
SK+ Y L +A V P + TQ L D R G E +
Sbjct: 1456 SKKFYDSRLEDGDNMAEKTQ-QVWHVNPKF-TQ--YRLFDVR--------GKER---TSN 1500
Query: 535 TGSFYNEGEAEIVVHHVFSLI--CAGVS-PSAIAVQSPYVAQVQHLRERLD---DLPEAA 588
T S YN E E +V+ V L+ V+ I V +PY +Q+ LR +
Sbjct: 1501 TMSTYNLEEVEYLVNMVDELLNKFPDVNFTGRIGVITPYRSQLHELRRAFKVKYGKSFMS 1560
Query: 589 GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
+++ T+D FQG+E D + S V+S + +GFL D RR+NVA+TRA + ++ + T+
Sbjct: 1561 TIDIQTVDGFQGQEKDIIFFSCVKSYSKHGIGFLRDFRRLNVALTRARSSLLIIGNMETL 1620
Score = 80 (33.2 bits), Expect = 4.4e-16, Sum P(3) = 4.4e-16
Identities = 23/65 (35%), Positives = 33/65 (50%)
Query: 223 SEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERV 282
SE+K + ++ Q KAI L+ +IQGPPGTGKT + II+ + R
Sbjct: 1119 SEIKA-AMKRYQVNEPQAKAIMCALDNNG-FTLIQGPPGTGKTKTIIGIISALLVDLSRY 1176
Query: 283 LVTAP 287
+T P
Sbjct: 1177 HITRP 1181
Score = 71 (30.1 bits), Expect = 3.7e-15, Sum P(3) = 3.7e-15
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 273 ARAVQQGERVLVTAPTNAAVDNMVEKLSDVGL---------NIVRVGNPARISPAVASKS 323
+++ + +++L+ AP+NAAVD ++ +L L +VR+GNP I+ +V S
Sbjct: 1185 SKSTESKQQILLCAPSNAAVDEVLLRLKRGFLLENGEKYIPRVVRIGNPETINVSVRDLS 1244
Query: 324 L 324
L
Sbjct: 1245 L 1245
Score = 52 (23.4 bits), Expect = 3.2e-13, Sum P(3) = 3.2e-13
Identities = 27/122 (22%), Positives = 52/122 (42%)
Query: 208 KEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKT-- 265
KE + E +LA E K++ + ++F ++ K + L L KK I++ T
Sbjct: 1305 KELQNKINEKNLA---EQKVEELQSQSF--TKNKEVDL-LRKKAQKAILKQADVVCATLS 1358
Query: 266 GLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLG 325
G +++A + V++ A + + L + VG+P ++ P V SK
Sbjct: 1359 GSGHDLVAHSSLNFSTVIIDEAAQAVELDTIIPLRYGAKKCILVGDPNQLPPTVLSKKAA 1418
Query: 326 EI 327
+
Sbjct: 1419 SL 1420
Score = 41 (19.5 bits), Expect = 4.4e-16, Sum P(3) = 4.4e-16
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 19 RMSELLRIERDAELEFTQEELNAVPTP 45
R+SE+ + ++ EL + + PTP
Sbjct: 762 RLSEMRKTKKQTELTNSAHVIKPSPTP 788
Score = 37 (18.1 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 401 DPLIRRLDTFDLVGKRCILAGDQC-QLAPVI 430
D + L F + ++ L+ DQC QLA V+
Sbjct: 717 DRTVTFLTDFIIRKQKAHLSADQCKQLANVL 747
>UNIPROTKB|Q9BXT6 [details] [associations]
symbol:MOV10L1 "Putative helicase Mov10l1" species:9606
"Homo sapiens" [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=NAS] [GO:0007283 "spermatogenesis" evidence=IEP]
[GO:0005524 "ATP binding" evidence=TAS] [GO:0000287 "magnesium ion
binding" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0007281 "germ cell development" evidence=IEP] [GO:0005622
"intracellular" evidence=IC] GO:GO:0007275 GO:GO:0005524
GO:GO:0000287 GO:GO:0007283 GO:GO:0003723 GO:GO:0005622
GO:GO:0007281 eggNOG:COG1112 GO:GO:0004004 EMBL:AL022328
EMBL:AF285604 EMBL:AK000033 EMBL:AK090740 EMBL:CR456466
EMBL:AL034546 EMBL:BC150137 EMBL:BC152539 EMBL:AL133068
IPI:IPI00005638 IPI:IPI00178391 IPI:IPI00215671 IPI:IPI00853536
PIR:T42668 RefSeq:NP_001157576.1 RefSeq:NP_001157577.1
RefSeq:NP_001157578.1 RefSeq:NP_061868.1 UniGene:Hs.62880
ProteinModelPortal:Q9BXT6 SMR:Q9BXT6 STRING:Q9BXT6
PhosphoSite:Q9BXT6 DMDM:22095856 PaxDb:Q9BXT6 PeptideAtlas:Q9BXT6
PRIDE:Q9BXT6 DNASU:54456 Ensembl:ENST00000262794
Ensembl:ENST00000354853 Ensembl:ENST00000395843
Ensembl:ENST00000395852 Ensembl:ENST00000395858
Ensembl:ENST00000545383 GeneID:54456 KEGG:hsa:54456 UCSC:uc003bjj.3
UCSC:uc003bjl.3 UCSC:uc003bjm.1 CTD:54456 GeneCards:GC22P050528
HGNC:HGNC:7201 HPA:HPA019034 MIM:605794 neXtProt:NX_Q9BXT6
PharmGKB:PA30909 HOVERGEN:HBG052382 InParanoid:Q9BXT6 KO:K13983
OMA:NMSGVTL OrthoDB:EOG49GKFV PhylomeDB:Q9BXT6 GenomeRNAi:54456
NextBio:56697 ArrayExpress:Q9BXT6 Bgee:Q9BXT6 CleanEx:HS_MOV10L1
Genevestigator:Q9BXT6 GermOnline:ENSG00000073146 InterPro:IPR026125
PANTHER:PTHR10887:SF6 Uniprot:Q9BXT6
Length = 1211
Score = 194 (73.4 bits), Expect = 4.8e-16, Sum P(3) = 4.8e-16
Identities = 87/278 (31%), Positives = 127/278 (45%)
Query: 411 DLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLER---------------AATLHEGV 455
D+ G+ +LAGD QL PVI SR A+ G+ VS LER A H +
Sbjct: 905 DISGQ-IVLAGDPMQLGPVIKSRLAMAYGLNVSFLERLMSRPAYQRDENAFGACGAHNPL 963
Query: 456 LATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDT 515
L TKL YR ++A+ S+ Y L + D PT +T LL
Sbjct: 964 LVTKLVKNYRSHEALLMLPSRLFYHREL--------EVCAD-----PTVVTS---LLGWE 1007
Query: 516 RLPYGSLSL---GCEEHLDLAGTG-SFYNEGEAEIVVHHVFSL---ICAGVSPSAIAVQS 568
+LP L G G S++N EA V+ + L I + VS S I V +
Sbjct: 1008 KLPKKGFPLIFHGVRGSEAREGKSPSWFNPAEAVQVLRYCCLLAHSISSQVSASDIGVIT 1067
Query: 569 PYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNT------LGAVGFL 622
PY QV+ +R L ++ + ++V +++ FQG+E +IIS VRSN +GFL
Sbjct: 1068 PYRKQVEKIRILLRNV-DLMDIKVGSVEEFQGQEYLVIIISTVRSNEDRFEDDRYFLGFL 1126
Query: 623 GDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRH 660
+S+R NVAITR + V+ + + + LL +
Sbjct: 1127 SNSKRFNVAITRPKALLIVLGNPHVLVRDPCFGALLEY 1164
Score = 94 (38.1 bits), Expect = 4.8e-16, Sum P(3) = 4.8e-16
Identities = 30/94 (31%), Positives = 50/94 (53%)
Query: 218 DLADW-SEVKLDGIMGKTF-----DDSQKKAIALGLNKK-RPL-LIIQGPPGTGKTGLLK 269
+++DW E++ F +++QK A+ L+ RPL I+ GPPGTGKT +
Sbjct: 722 EMSDWVDEIQTPKARKMEFFNPVLNENQKLAVKRILSGDCRPLPYILFGPPGTGKTVTII 781
Query: 270 EIIARA--VQQGERVLVTAPTNAAVDNMVEKLSD 301
E + + R+LV AP+N+A D + +L +
Sbjct: 782 EAVLQVHFALPDSRILVCAPSNSAADLVCLRLHE 815
Score = 48 (22.0 bits), Expect = 4.8e-16, Sum P(3) = 4.8e-16
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 299 LSDVGLNIVRVGNPARISPAVASK 322
+SD+ IV G+P ++ P + S+
Sbjct: 903 MSDISGQIVLAGDPMQLGPVIKSR 926
>UNIPROTKB|I3LBB7 [details] [associations]
symbol:I3LBB7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043142 "single-stranded DNA-dependent ATPase activity"
evidence=IEA] [GO:0033567 "DNA replication, Okazaki fragment
processing" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] InterPro:IPR026851 GO:GO:0017108
GO:GO:0043142 GO:GO:0033567 PANTHER:PTHR10887:SF14
GeneTree:ENSGT00550000074852 EMBL:CU468421
Ensembl:ENSSSCT00000030264 OMA:STCHITH Uniprot:I3LBB7
Length = 249
Score = 209 (78.6 bits), Expect = 6.1e-16, P = 6.1e-16
Identities = 65/216 (30%), Positives = 107/216 (49%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
+R +L GD QL P++L+R+A G+ SL +R V+ +LT QYRMN I S +
Sbjct: 37 RRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKNAVV--QLTVQYRMNSKIMSLS 94
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVKPTWI--------TQCPLLL--LDTRLPYGSLSL 524
+K Y G L S + +V+ P +K + ++ P ++ + P L+
Sbjct: 95 NKLTYEGKLECGSDKVASAVVNLPKLKDVKLELEFYADYSENPWMVGAFEPNNPVCFLNT 154
Query: 525 GCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL 584
+ G N EA++VV+ + AG +P I + +PY Q++ + + L
Sbjct: 155 DKVPAPEQVEKGGVSNITEAKLVVYLTSIFVKAGCNPCNIGIIAPYRQQLKVINDLLSH- 213
Query: 585 PEAAG-VEVATIDSFQGREADAVIISMVRSNTLGAV 619
+ G VEV T+D +QGR+ +++S VRSN G V
Sbjct: 214 -SSVGMVEVNTVDKYQGRDKSIILVSFVRSNRDGTV 248
>ZFIN|ZDB-GENE-061013-333 [details] [associations]
symbol:zgc:154086 "zgc:154086" species:7955 "Danio
rerio" [GO:0005575 "cellular_component" evidence=ND]
ZFIN:ZDB-GENE-061013-333 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 PROSITE:PS51192 InterPro:IPR025223 Pfam:PF14444
HOVERGEN:HBG052382 KO:K13983 InterPro:IPR026125
PANTHER:PTHR10887:SF6 HOGENOM:HOG000015363 EMBL:BC124807
IPI:IPI00611882 RefSeq:NP_001070795.1 UniGene:Dr.40096
ProteinModelPortal:Q08BA5 GeneID:768184 KEGG:dre:768184
NextBio:20918499 Uniprot:Q08BA5
Length = 1106
Score = 197 (74.4 bits), Expect = 6.2e-16, Sum P(4) = 6.2e-16
Identities = 85/264 (32%), Positives = 128/264 (48%)
Query: 418 ILAGDQCQLAPVILSRKALEGGIGVSLLERAA--TLH----EG---VLATKLTTQYRMND 468
+LAGD QL PV+ SR A G+GVSLLER +L+ G +L TKL YR ++
Sbjct: 839 VLAGDPKQLGPVVKSRLASVFGLGVSLLERLMGNSLYACGERGFNPLLVTKLLYNYRSHE 898
Query: 469 AIASWASKEMYGGSL-ISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGS-LSLGC 526
A+ S+ Y G L + + A L + PT PL+ R GS + GC
Sbjct: 899 ALLDLPSRLFYAGELCVRAQRAAVDSLCHWNKL-PT--RGFPLIFHGVR---GSEMREGC 952
Query: 527 EEHLDLAGTGSFYNEGEAEIVVHHVFSL---ICAGVSPSAIAVQSPYVAQVQHLRERLDD 583
S++N EA V+ + L + +S + I V +PY QV+ +R L
Sbjct: 953 NP--------SWFNPAEAVQVMMYCCQLAKRLYNPISAADIGVIAPYRKQVEKIRVLLQR 1004
Query: 584 LPEAAGVEVATIDSFQGREADAVIISMVRSNT--LGA-----VGFLGDSRRMNVAITRAC 636
+ V+V +++ FQG+E +I+S VRSN L +GFL + +R NVAITRA
Sbjct: 1005 VG-LGEVKVGSVEEFQGQEFLIMILSTVRSNESLLNEELQCMLGFLSNPKRFNVAITRAK 1063
Query: 637 KHVAVVCDSSTICHNTFLARLLRH 660
+ V+ + + + LL++
Sbjct: 1064 ALLIVIGNPHVLIKEPCFSALLQY 1087
Score = 91 (37.1 bits), Expect = 6.2e-16, Sum P(4) = 6.2e-16
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 238 SQKKAIALGLN-KKRPL-LIIQGPPGTGKTGLLKEIIARAVQQ--GERVLVTAPTNAAVD 293
+QK+A+ L+ + RP ++ GPPGTGKT L E I + + RVLV P+N+A D
Sbjct: 676 AQKQAVRRILSGESRPTPYVLFGPPGTGKTITLIEAILQVHHRISCSRVLVCTPSNSAAD 735
Query: 294 NMVEKLSDVG 303
+ +L G
Sbjct: 736 LICMRLHHSG 745
Score = 45 (20.9 bits), Expect = 6.2e-16, Sum P(4) = 6.2e-16
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 299 LSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLAS 334
LS+ IV G+P K LG +VKS+LAS
Sbjct: 831 LSETSGQIVLAGDP---------KQLGPVVKSRLAS 857
Score = 42 (19.8 bits), Expect = 6.2e-16, Sum P(4) = 6.2e-16
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 102 PTTLSPGDMVCVRVC 116
P + PG +CV VC
Sbjct: 343 PLDIHPGQKMCVCVC 357
Score = 40 (19.1 bits), Expect = 1.0e-10, Sum P(3) = 1.0e-10
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 39 LNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICNLFVVSTSTGLGGMHLVLFRV 94
+NA P+E+ E L + RA +++ + VVST + G + + RV
Sbjct: 755 VNATCRPEESMS-----EELRQYARAGEDIRHASFHRIVVSTCSSAGMFYQIGLRV 805
>ASPGD|ASPL0000069352 [details] [associations]
symbol:AN7246 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0005525 "GTP
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] InterPro:IPR000641 InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 PRINTS:PR00819 SMART:SM00382
GO:GO:0005524 EMBL:BN001304 eggNOG:COG0464 GO:GO:0017111
EMBL:AACD01000123 RefSeq:XP_680515.1 ProteinModelPortal:Q5AWT4
EnsemblFungi:CADANIAT00000198 GeneID:2870136 KEGG:ani:AN7246.2
HOGENOM:HOG000168598 OMA:LDNQFRL OrthoDB:EOG4CJZR5 Uniprot:Q5AWT4
Length = 2310
Score = 136 (52.9 bits), Expect = 6.2e-16, Sum P(3) = 6.2e-16
Identities = 47/145 (32%), Positives = 80/145 (55%)
Query: 219 LADWSEVKLDGIMGK----TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR 274
L D E L I+G + D SQ +++ GL ++ + +IQGPPGTGK+ + +IA+
Sbjct: 443 LGD-QERTLQDILGTEKPLSLDPSQMESLLSGLTQR--VSLIQGPPGTGKS-FVGALIAK 498
Query: 275 AVQQG--ERVLVTAPTNAAVDNMVEKLSDVGLN---IVRVGNPA--RISPA-VASKSLGE 326
A+ + E +LV TN A+D +E L D+G++ IVR+G+ + R P ++++
Sbjct: 499 ALYKHSKETILVMCYTNHALDQFLEDLMDIGIDESAIVRLGSKSCQRTKPLRLSAQQAIR 558
Query: 327 IVKSKLA-SFVAEFERKKSDLRKDL 350
KSK S + + K D+ ++L
Sbjct: 559 PRKSKATWSIIDGLKSKARDISEEL 583
Score = 120 (47.3 bits), Expect = 6.2e-16, Sum P(3) = 6.2e-16
Identities = 22/62 (35%), Positives = 44/62 (70%)
Query: 590 VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTIC 649
++++TID++QG E+D VI ++ RSN G +GF+ +R+NV ++RA + ++ +S+T
Sbjct: 960 IKLSTIDNYQGEESDIVIATLTRSNKDGDIGFMSAPQRLNVLLSRARDVLIMIGNSNTFT 1019
Query: 650 HN 651
++
Sbjct: 1020 NS 1021
Score = 91 (37.1 bits), Expect = 6.2e-16, Sum P(3) = 6.2e-16
Identities = 47/172 (27%), Positives = 73/172 (42%)
Query: 415 KRCILAGDQCQLAPVILSRK-ALEGGIGV----SLLERAATLHEGVLATKLTTQYRMNDA 469
K+ I+ GD QL P I + ++E G G SL ER + G + L Q+RM
Sbjct: 767 KQLIMIGDHQQLRPKINNYALSVEKGSGYDLNRSLFERL--VESGYPHSTLAKQHRMAPE 824
Query: 470 IASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEH 529
I++ + Y L+ + L P + Q ++ +D P G L G +
Sbjct: 825 ISALVRRLTYP-DLLDGDKTKTRLA-------PRGL-QNRVVFIDHSQPEGFLH-GVSDR 874
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERL 581
G GS N E ++V+ V L G + + +PY+ Q+ LRE L
Sbjct: 875 DGDGGKGSKQNTFEVKLVLKIVKYLGQQGYGTDKLVILTPYLGQLHLLREEL 926
Score = 44 (20.5 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 572 AQVQHLRERLDDLPEAAGVEV 592
A+ QH R RL++L A +E+
Sbjct: 2233 AKKQHERRRLEELKRRAELEI 2253
Score = 43 (20.2 bits), Expect = 4.7e-11, Sum P(3) = 4.7e-11
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 401 DPLIRRLDTFDLVGKRCIL-AGDQCQLAPVILS 432
DP++ LD++DLV I A Q P+ LS
Sbjct: 931 DPVLNDLDSYDLVRAGLISHASAQHVKRPIKLS 963
Score = 38 (18.4 bits), Expect = 5.7e-06, Sum P(3) = 5.7e-06
Identities = 18/58 (31%), Positives = 24/58 (41%)
Query: 159 GKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEE 216
G R+DR Q D + ER + L+ + G +I A V L V LEE
Sbjct: 693 GLIARLDRCQKKLDEMWNERTRDVLLSKRIIGCTTTAAAINASV-LNTTSPGVVLLEE 749
>ZFIN|ZDB-GENE-030131-9089 [details] [associations]
symbol:mov10b.1 "Moloney leukemia virus 10,
homolog, b.1" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISS] [GO:0035279 "mRNA cleavage involved in gene
silencing by miRNA" evidence=ISS] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR003593
SMART:SM00382 ZFIN:ZDB-GENE-030131-9089 GO:GO:0005524 GO:GO:0003723
GO:GO:0004386 GO:GO:0000932 GO:GO:0035279 eggNOG:COG1112
InterPro:IPR026122 PANTHER:PTHR10887:SF17
GeneTree:ENSGT00550000074391 EMBL:BX323059 EMBL:BC171375
IPI:IPI00801311 RefSeq:NP_001037807.2 UniGene:Dr.74181
ProteinModelPortal:Q1LXK4 STRING:Q1LXK4 Ensembl:ENSDART00000086946
GeneID:556024 KEGG:dre:556024 CTD:556024 HOGENOM:HOG000239755
InParanoid:Q1LXK4 OMA:NLVGECY OrthoDB:EOG4SXNC4 NextBio:20881283
Bgee:Q1LXK4 Uniprot:Q1LXK4
Length = 1013
Score = 135 (52.6 bits), Expect = 7.0e-16, Sum P(3) = 7.0e-16
Identities = 37/119 (31%), Positives = 65/119 (54%)
Query: 537 SFYNEGEAEIVVHHVFSLIC-------AGVSPSAIAVQSPYVAQVQHLRERLD---DLPE 586
SF+N E + ++ ++ L+ A +SP I + +PY QV+ +R+ + +L
Sbjct: 815 SFFNTSEIDKIMDYLKKLLLTQAKKGIAKISPKDIGIIAPYRKQVEKIRQAIKIHRELKS 874
Query: 587 AAGVE---VATIDSFQGREADAVIISMVRSNTLGAV-------GFLGDSRRMNVAITRA 635
+G+E V +++ FQG+E +I+S VRS+ + GFL + +R NVA+TRA
Sbjct: 875 LSGIEELKVGSVEEFQGQERKVIIVSTVRSSKEHIILDDKFNIGFLKNEKRFNVAVTRA 933
Score = 113 (44.8 bits), Expect = 7.0e-16, Sum P(3) = 7.0e-16
Identities = 26/59 (44%), Positives = 35/59 (59%)
Query: 243 IALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ--GERVLVTAPTNAAVDNMVEKL 299
I G +K P L+ GPPGTGKT + E I + + G R+L AP+N+A D + EKL
Sbjct: 536 IVAGTSKPAPYLVF-GPPGTGKTVTIVEAIKQVEKNTGGARILACAPSNSAADQLGEKL 593
Score = 87 (35.7 bits), Expect = 7.0e-16, Sum P(3) = 7.0e-16
Identities = 27/76 (35%), Positives = 39/76 (51%)
Query: 418 ILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHE-------GV---LATKLTTQYRMN 467
+LAGD QL P++ S A++ G+G+SLLER T +E G TKL YR +
Sbjct: 698 VLAGDPKQLGPILRSPFAIKYGLGLSLLERLMTQNELYQKGDTGFDNRYVTKLLQNYRSH 757
Query: 468 DAIASWASKEMYGGSL 483
+I ++ Y L
Sbjct: 758 PSILKVPNELFYDNEL 773
>POMBASE|SPCC1739.03 [details] [associations]
symbol:hrr1 "Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1" species:4896 "Schizosaccharomyces
pombe" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0030702
"chromatin silencing at centromere" evidence=IMP] [GO:0031048
"chromatin silencing by small RNA" evidence=IMP] [GO:0031379
"RNA-directed RNA polymerase complex" evidence=IDA] [GO:0031380
"nuclear RNA-directed RNA polymerase complex" evidence=IDA]
PomBase:SPCC1739.03 GO:GO:0005829 GO:GO:0005524 GO:GO:0007059
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003723 GO:GO:0006338
GO:GO:0007049 GO:GO:0030702 GO:GO:0004386 GO:GO:0031048
eggNOG:COG1112 GO:GO:0016585 GO:GO:0031380 PIR:T41111
RefSeq:NP_588411.2 DIP:DIP-29303N STRING:O74465
EnsemblFungi:SPCC1739.03.1 GeneID:2539248 OrthoDB:EOG4DRDMD
NextBio:20800418 Uniprot:O74465
Length = 999
Score = 152 (58.6 bits), Expect = 8.4e-16, Sum P(3) = 8.4e-16
Identities = 43/108 (39%), Positives = 61/108 (56%)
Query: 531 DLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERL--DDLP-EA 587
D G S N EA+++V LI GV P I + Y AQ + L ERL + L E
Sbjct: 826 DNDGFASKINLFEAQMLVQFAVYLINNGVEPQKITCLTFYAAQ-KDLIERLLSESLNREK 884
Query: 588 AGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
++VAT+D +QG E D V++S+VR+N VGFL R+ V+++RA
Sbjct: 885 HFIKVATVDGYQGEENDVVLLSLVRNNDRTEVGFLSSPHRVCVSLSRA 932
Score = 133 (51.9 bits), Expect = 8.4e-16, Sum P(3) = 8.4e-16
Identities = 42/131 (32%), Positives = 67/131 (51%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGER----VLVTAPTNAA 291
D SQ KA L K+ L IIQGPPGTGK+ + + I ++ +LV TN A
Sbjct: 373 DSSQLKAYQSMLTKR--LSIIQGPPGTGKSFVTLKAIETLLENTHSHVLPILVACQTNHA 430
Query: 292 VDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVA---EFERKKSDLRK 348
VD ++ +L G +++R+G+ + P +A+ ++ + K SF A E KK L K
Sbjct: 431 VDQILIRLLHQGASVMRLGSRTK-DPEIAAVTIFQKAKHTKHSFKAAYNEIRHKKQRLIK 489
Query: 349 DLRQCLKDDSL 359
+ + + +L
Sbjct: 490 QITNIMHNFNL 500
Score = 52 (23.4 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 24/94 (25%), Positives = 44/94 (46%)
Query: 450 TLHEGVLATKLTTQYRMNDAIASWA-SKEMYGGSLIS-SSTVASHLLVDTPFVKP-TWIT 506
T+ V+A KL+ R I WA S+ + GSL+ S+ + T +P + +
Sbjct: 211 TISSSVIAAKLSFSVRAKKKI-KWATSRRLISGSLVLLSNDDFQTFRIGTVCARPLSGLN 269
Query: 507 QCPLLLLDTRLPYGSLSLGC-EEHLDLAGTGSFY 539
+ P + D + S+SL EE++ + T ++
Sbjct: 270 KHPHEI-DVKFEDISISLDPREEYVMIEATSGYW 302
Score = 48 (22.0 bits), Expect = 8.4e-16, Sum P(3) = 8.4e-16
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 415 KRCILAGDQCQLAPVILSRKALEG---GIGVSLLERAATLHEGVLATKLTTQYRMNDAI 470
++ +L GD QL P S AL + +S+ ER + + T+LT Q RM+ I
Sbjct: 730 EQLVLIGDHKQLRPGC-STYALRQDPFNLSISMFERL--VENDMEYTRLTMQRRMHPQI 785
>MGI|MGI:2443480 [details] [associations]
symbol:Setx "senataxin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0007623 "circadian rhythm"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR026121 MGI:MGI:2443480 GO:GO:0005524 GO:GO:0005737
GO:GO:0005654 GO:GO:0005730 GO:GO:0007623 GO:GO:0006302
GO:GO:0004386 eggNOG:COG1112 GO:GO:0006369 KO:K10706 EMBL:AL772379
GeneTree:ENSGT00580000081652 CTD:23064 HOVERGEN:HBG108476
OrthoDB:EOG4XWFWX PANTHER:PTHR10887:SF15 EMBL:AL845267
EMBL:AK044730 EMBL:AK048354 EMBL:AK077911 EMBL:BC046382
EMBL:BC058109 EMBL:BC079604 EMBL:AK129177 EMBL:BK001523
IPI:IPI00421108 IPI:IPI00626271 RefSeq:NP_932150.2 UniGene:Mm.41867
ProteinModelPortal:A2AKX3 SMR:A2AKX3 DIP:DIP-56995N IntAct:A2AKX3
STRING:A2AKX3 PhosphoSite:A2AKX3 PaxDb:A2AKX3 PRIDE:A2AKX3
Ensembl:ENSMUST00000061578 Ensembl:ENSMUST00000129544 GeneID:269254
KEGG:mmu:269254 UCSC:uc008izm.1 InParanoid:A2AKX3 NextBio:392760
Bgee:A2AKX3 CleanEx:MM_SETX Genevestigator:A2AKX3 Uniprot:A2AKX3
Length = 2646
Score = 200 (75.5 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 82/284 (28%), Positives = 136/284 (47%)
Query: 407 LDTFDLVGKRC---ILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHE--------GV 455
++T + RC IL GD QL P ++S KA E G S++ R L E G
Sbjct: 2165 VETLSPLIHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMARFCKLLEENVEQNMIGR 2224
Query: 456 LAT-KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLD 514
L +LT QYRM+ I + S +Y +L ++ L ++ W Q P L+ D
Sbjct: 2225 LPVLQLTIQYRMHPDICLFPSNYVYNKNL------KTNRLTESIRCSSEWPFQ-PYLVFD 2277
Query: 515 TRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICA---GVSPSAIAVQSPYV 571
G S E D S+ N E ++V+ + LI +S I + + Y
Sbjct: 2278 V----GDGS----ERRD---NDSYINVQEIKLVME-IIKLIKEKRKDISFRNIGIITHYK 2325
Query: 572 AQVQHLRERLD-DLPEAAGVEVATIDSFQGREADAVIISMVRSNTL-GAVGFLGDSRRMN 629
AQ +++ L+ + + EV T+D+FQGR+ D +I++ VR++ + G++GFL +R+N
Sbjct: 2326 AQKTMIQKDLEKEFDKKGPAEVDTVDAFQGRQKDCIIVTCVRASAVQGSIGFLASLQRLN 2385
Query: 630 VAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRV-KHAEP 672
V ITRA + ++ T+ N L++ + G + K ++P
Sbjct: 2386 VTITRAKYSLFILGHLRTLMENQHWYELIQDAQKRGAIIKTSDP 2429
Score = 93 (37.8 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 42/130 (32%), Positives = 61/130 (46%)
Query: 253 LLIIQGPPGTGKT----GLLKEIIARAVQQGE------------RVLVTAPTNAAVDNMV 296
+ +I GPPGTGK+ GLL ++ ++G RVLV AP+NAAVD ++
Sbjct: 1934 ICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDENFNAKIKQNRVLVCAPSNAAVDELM 1993
Query: 297 --------EKLSDVGLNIVRVG--NPARISPAVASKSLG-EIVKSKLASFVAEFERKKSD 345
EK D + G N R+ P KS+ E++K L S V R K D
Sbjct: 1994 KKIILEFKEKCKDKKNPLGNCGDINLVRLGP---EKSINTEVLKFSLDSQVNH--RMKKD 2048
Query: 346 LRKDLRQCLK 355
L +++ L+
Sbjct: 2049 LPSHIQEMLR 2058
Score = 82 (33.9 bits), Expect = 6.4e-15, Sum P(3) = 6.4e-15
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 233 KTFDDSQKKAI--ALGLNKKRP----LLIIQGPPGTGKTGLLKEIIARAVQQGER 281
K F++ QKKAI A + K P + +I GPPGTGK+ + ++ R + + +R
Sbjct: 1908 KDFNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLLTENQR 1962
Score = 54 (24.1 bits), Expect = 6.4e-15, Sum P(3) = 6.4e-15
Identities = 22/71 (30%), Positives = 32/71 (45%)
Query: 299 LSDVG-LNIVRVGNPARISPAVASKSLGEIV----KSKLASFVAEFERKKSDLRKDLRQC 353
L + G +N+VR+G I+ V SL V K L S + E R+K L L +
Sbjct: 2011 LGNCGDINLVRLGPEKSINTEVLKFSLDSQVNHRMKKDLPSHIQEMLRRKEILDAQLDEL 2070
Query: 354 LKDDSLAAGIR 364
+ +L G R
Sbjct: 2071 SRQRALCRGGR 2081
Score = 44 (20.5 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 22/87 (25%), Positives = 36/87 (41%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPG-TGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMV 296
S +K +A + K + P TG T L+ + +R + G PT+ + +
Sbjct: 1391 SNEKQLAKCMLSKTEVAEASSDPWVTGITCLVNQCESRVLSGG------VPTDVVMVSAS 1444
Query: 297 EKLSDVGLNIVRVGNPARISPAVASKS 323
E D G V+VG A + A + S
Sbjct: 1445 EDPVDGGAVTVQVGEVASVKAAEPASS 1471
>UNIPROTKB|F1NNW1 [details] [associations]
symbol:MOV10 "Putative helicase MOV-10" species:9031
"Gallus gallus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0035279 "mRNA cleavage involved in gene silencing
by miRNA" evidence=IEA] GO:GO:0000932 GO:GO:0035279
InterPro:IPR026122 PANTHER:PTHR10887:SF17
GeneTree:ENSGT00550000074391 OMA:VRFFKLD IPI:IPI00594294
EMBL:AADN02045008 Ensembl:ENSGALT00000002368 Uniprot:F1NNW1
Length = 735
Score = 175 (66.7 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 69/225 (30%), Positives = 104/225 (46%)
Query: 414 GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLA-----------TKLTT 462
G + +LAGD QL PV+ S A + G+G SLLER LH + A TKL
Sbjct: 435 GGQLVLAGDPQQLGPVLRSPLAAQHGLGTSLLERLM-LHNALYAKSDEGYNPQFVTKLLW 493
Query: 463 QYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSL 522
YR + AI ++ Y L + S V + TW + P + +P
Sbjct: 494 NYRSHKAILKVPNELFYDSEL--KAYEGSEPDVRNFYC--TW-EELP----NRGVPIIFH 544
Query: 523 SLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLI-------CAGVSPSAIAVQSPYVAQVQ 575
+ C E A + SF+N E E+VV ++ L+ C +SP I + SPY QV+
Sbjct: 545 GV-CGEDEREAKSPSFFNTAEIEVVVQYLQKLLQSQGRRGCPTISPKEIGIISPYRKQVE 603
Query: 576 HLRERLDD-------LPEAAGVEVATIDSFQGREADAVIISMVRS 613
+R + LP+ ++V +++ FQG+E ++IS VRS
Sbjct: 604 KIRLAITSKDPVLRALPDIGQLKVGSVEEFQGQERRVILISTVRS 648
Score = 141 (54.7 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 38/121 (31%), Positives = 65/121 (53%)
Query: 556 CAGVSPSAIAVQSPYVAQVQHLRERLDD-------LPEAAGVEVATIDSFQGREADAVII 608
C +SP I + SPY QV+ +R + LP+ ++V +++ FQG+E ++I
Sbjct: 584 CPTISPKEIGIISPYRKQVEKIRLAITSKDPVLRALPDIGQLKVGSVEEFQGQERRVILI 643
Query: 609 SMVRS-------NTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
S VRS + +GFL + +R+NVA+TRA + VV +++ + + R LR+
Sbjct: 644 STVRSCSEYLQLDQTFRLGFLKNPKRLNVALTRAKALLIVVGNAAVLSKDPHWHRFLRYC 703
Query: 662 R 662
R
Sbjct: 704 R 704
Score = 104 (41.7 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 25/61 (40%), Positives = 36/61 (59%)
Query: 241 KAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ--QGERVLVTAPTNAAVDNMVEK 298
K I G+++ P LI GPPGTGKT L E I + + R+L AP+N+A D + ++
Sbjct: 268 KHIVTGMSRPAPYLIF-GPPGTGKTVTLVEAIKQVWSCFKDARILACAPSNSAADLLCQR 326
Query: 299 L 299
L
Sbjct: 327 L 327
>UNIPROTKB|D4AEB3 [details] [associations]
symbol:Setx "Protein Setx" species:10116 "Rattus
norvegicus" [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IEA] [GO:0007623 "circadian rhythm"
evidence=IEA] InterPro:IPR026121 RGD:1565575 GO:GO:0005737
GO:GO:0005654 GO:GO:0006302 KO:K10706 GeneTree:ENSGT00580000081652
CTD:23064 OMA:RLINHFE OrthoDB:EOG4XWFWX PANTHER:PTHR10887:SF15
IPI:IPI00476851 RefSeq:XP_342401.3 ProteinModelPortal:D4AEB3
PRIDE:D4AEB3 Ensembl:ENSRNOT00000017984 GeneID:362096
KEGG:rno:362096 NextBio:678646 ArrayExpress:D4AEB3 Uniprot:D4AEB3
Length = 2647
Score = 204 (76.9 bits), Expect = 2.4e-15, Sum P(3) = 2.4e-15
Identities = 81/284 (28%), Positives = 135/284 (47%)
Query: 407 LDTFDLVGKRC---ILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHE--------GV 455
++T + RC +L GD QL P ++S KA E G S++ R L E G
Sbjct: 2166 VETLSPLIHRCNKLVLVGDPKQLPPTVISMKAQEYGYDQSMMARFCKLLEENVEQNMIGR 2225
Query: 456 LAT-KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLD 514
L +LT QYRM+ I + S +Y +L ++ L +T W Q P L+ D
Sbjct: 2226 LPVLQLTIQYRMHPDICLFPSNYVYNKNL------KTNRLTETIRCSSEWPFQ-PYLVFD 2278
Query: 515 TRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICA---GVSPSAIAVQSPYV 571
G G E+ S+ N E ++V+ + LI +S I + + Y
Sbjct: 2279 V----GD---GSEQR----DNDSYINVQEIKLVME-IIKLIKEKRKDISFRNIGIITHYK 2326
Query: 572 AQVQHLRERLD-DLPEAAGVEVATIDSFQGREADAVIISMVRSNTL-GAVGFLGDSRRMN 629
AQ +++ L+ + + EV T+D+FQGR+ D +I++ VR++ + G++GFL +R+N
Sbjct: 2327 AQKTMIQKDLEKEFDKKGPAEVDTVDAFQGRQKDCIIVTCVRASAVQGSIGFLASLQRLN 2386
Query: 630 VAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRV-KHAEP 672
V ITRA + ++ T+ N L++ + G + K +P
Sbjct: 2387 VTITRAKYSLFILGHLRTLMENQHWYELIQDAQKRGAIIKTCDP 2430
Score = 99 (39.9 bits), Expect = 2.4e-15, Sum P(3) = 2.4e-15
Identities = 42/130 (32%), Positives = 63/130 (48%)
Query: 253 LLIIQGPPGTGKT----GLLKEIIARAVQQGE------------RVLVTAPTNAAVDNMV 296
+ +I GPPGTGK+ GLL ++ + ++G RVLV AP+NAAVD ++
Sbjct: 1935 ICLIHGPPGTGKSKTIVGLLYRLLTESQRKGHSDENFNAKIKQNRVLVCAPSNAAVDELM 1994
Query: 297 --------EKLSDVGLNIVRVG--NPARISPAVASKSLG-EIVKSKLASFVAEFERKKSD 345
EK D + G N R+ P KS+ E++K L S V+ R K D
Sbjct: 1995 KKIILEFKEKCKDKKNPLGNCGDINLVRLGP---EKSINTEVLKFSLDSQVSH--RMKKD 2049
Query: 346 LRKDLRQCLK 355
L +++ L+
Sbjct: 2050 LPSHIQEMLR 2059
Score = 82 (33.9 bits), Expect = 2.4e-15, Sum P(3) = 2.4e-15
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 233 KTFDDSQKKAI--ALGLNKKRP----LLIIQGPPGTGKTGLLKEIIARAVQQGER 281
K F++ QKKAI A + K P + +I GPPGTGK+ + ++ R + + +R
Sbjct: 1909 KDFNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLLTESQR 1963
Score = 59 (25.8 bits), Expect = 2.8e-11, Sum P(3) = 2.8e-11
Identities = 25/87 (28%), Positives = 37/87 (42%)
Query: 238 SQKKAIALG-LNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMV 296
S +K +A G L+K GP GTG T L+ + +R + G PT+ + +
Sbjct: 1393 SSEKQLAKGTLSKAEVAEAASGPWGTGITCLVNQCESRVLSGG------VPTDVLMGSAS 1446
Query: 297 EKLSDVGLNIVRVGNPARISPAVASKS 323
E G V+VG A + A S
Sbjct: 1447 EDPVGGGALTVQVGEVAAVRAAEPESS 1473
Score = 54 (24.1 bits), Expect = 2.4e-15, Sum P(3) = 2.4e-15
Identities = 22/71 (30%), Positives = 32/71 (45%)
Query: 299 LSDVG-LNIVRVGNPARISPAVASKSLGEIV----KSKLASFVAEFERKKSDLRKDLRQC 353
L + G +N+VR+G I+ V SL V K L S + E R+K L L +
Sbjct: 2012 LGNCGDINLVRLGPEKSINTEVLKFSLDSQVSHRMKKDLPSHIQEMLRRKEILDAQLDEL 2071
Query: 354 LKDDSLAAGIR 364
+ +L G R
Sbjct: 2072 SRQRALCRGGR 2082
Score = 37 (18.1 bits), Expect = 2.4e-15, Sum P(3) = 2.4e-15
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 224 EVKLDGIMGKTFDDSQKKAIALG 246
E+K + + +FDD K I G
Sbjct: 859 EIKSEKLDNSSFDDEDKLQIQEG 881
>UNIPROTKB|Q7Z333 [details] [associations]
symbol:SETX "Probable helicase senataxin" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008219
"cell death" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0007623 "circadian
rhythm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IC] [GO:0003678 "DNA helicase
activity" evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006302
"double-strand break repair" evidence=IDA] [GO:0032508 "DNA duplex
unwinding" evidence=TAS] InterPro:IPR026121 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0008219 GO:GO:0006396 GO:GO:0006302 Orphanet:803
eggNOG:COG1112 GO:GO:0003678 KO:K10706 EMBL:AL159997 Orphanet:64753
EMBL:AY362728 EMBL:BX537849 EMBL:BX538166 EMBL:CR749249
EMBL:AL353701 EMBL:BC032600 EMBL:BC032622 EMBL:BC078166
EMBL:BC106017 EMBL:BC137350 EMBL:AB014525 EMBL:AK001456
EMBL:AK022902 IPI:IPI00142538 IPI:IPI00646645 IPI:IPI00719643
RefSeq:NP_055861.3 UniGene:Hs.460317 ProteinModelPortal:Q7Z333
SMR:Q7Z333 IntAct:Q7Z333 STRING:Q7Z333 PhosphoSite:Q7Z333
DMDM:296453021 PaxDb:Q7Z333 PRIDE:Q7Z333 Ensembl:ENST00000224140
Ensembl:ENST00000372169 Ensembl:ENST00000393220
Ensembl:ENST00000436441 GeneID:23064 KEGG:hsa:23064 UCSC:uc004cbj.3
UCSC:uc004cbk.3 UCSC:uc010mzt.3 CTD:23064 GeneCards:GC09M135136
HGNC:HGNC:445 HPA:HPA024105 MIM:602433 MIM:606002 MIM:608465
neXtProt:NX_Q7Z333 PharmGKB:PA24751 HOVERGEN:HBG108476
InParanoid:Q7Z333 OMA:RLINHFE OrthoDB:EOG4XWFWX PhylomeDB:Q7Z333
ChiTaRS:SETX GenomeRNAi:23064 NextBio:44145 ArrayExpress:Q7Z333
Bgee:Q7Z333 Genevestigator:Q7Z333 GermOnline:ENSG00000107290
PANTHER:PTHR10887:SF15 Uniprot:Q7Z333
Length = 2677
Score = 210 (79.0 bits), Expect = 2.9e-15, Sum P(3) = 2.9e-15
Identities = 86/279 (30%), Positives = 135/279 (48%)
Query: 407 LDTFDLVGKRC---ILAGDQCQLAPVILSRKALEGGIGVSLLER-AATLHEGV---LATK 459
++T + RC IL GD QL P ++S KA E G S++ R L E V + ++
Sbjct: 2189 IETLTPLIHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMARFCRLLEENVEHNMISR 2248
Query: 460 L-----TTQYRMNDAIASWASKEMYGGSLISS-STVASHLLVDTPFVKPTWITQCPLLLL 513
L T QYRM+ I + S +Y +L ++ T A D PF P L+
Sbjct: 2249 LPILQLTVQYRMHPDICLFPSNYVYNRNLKTNRQTEAIRCSSDWPFQ--------PYLVF 2300
Query: 514 DTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC---AGVSPSAIAVQSPY 570
D G S E D S+ N E ++V+ + LI VS I + + Y
Sbjct: 2301 DV----GDGS----ERRD---NDSYINVQEIKLVME-IIKLIKDKRKDVSFRNIGIITHY 2348
Query: 571 VAQVQHLRERLDDLPEAAG-VEVATIDSFQGREADAVIISMVRSNTL-GAVGFLGDSRRM 628
AQ +++ LD + G EV T+D+FQGR+ D VI++ VR+N++ G++GFL +R+
Sbjct: 2349 KAQKTMIQKDLDKEFDRKGPAEVDTVDAFQGRQKDCVIVTCVRANSIQGSIGFLASLQRL 2408
Query: 629 NVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRV 667
NV ITRA + ++ T+ N +L++ + G +
Sbjct: 2409 NVTITRAKYSLFILGHLRTLMENQHWNQLIQDAQKRGAI 2447
Score = 87 (35.7 bits), Expect = 2.9e-15, Sum P(3) = 2.9e-15
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 253 LLIIQGPPGTGKT----GLLKEIIARAVQQGE------------RVLVTAPTNAAVDNMV 296
+ +I GPPGTGK+ GLL ++ ++G RVLV AP+NAAVD ++
Sbjct: 1958 ICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDENSNAKIKQNRVLVCAPSNAAVDELM 2017
Query: 297 EKL 299
+K+
Sbjct: 2018 KKI 2020
Score = 74 (31.1 bits), Expect = 6.2e-14, Sum P(3) = 6.2e-14
Identities = 33/104 (31%), Positives = 48/104 (46%)
Query: 281 RVLVTAPTNAAVDNMVEK---------------LSDVG-LNIVRVGNPARISPAVASKSL 324
RVLV AP+NAAVD +++K L + G +N+VR+G I+ V SL
Sbjct: 2002 RVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPLGNCGDINLVRLGPEKSINSEVLKFSL 2061
Query: 325 GEIV----KSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIR 364
V K +L S V ++K L L + + +L G R
Sbjct: 2062 DSQVNHRMKKELPSHVQAMHKRKEFLDYQLDELSRQRALCRGGR 2105
Score = 42 (19.8 bits), Expect = 2.9e-15, Sum P(3) = 2.9e-15
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 45 PDENSDSSKPIEFLVSHGRAPQELCDTICN 74
PD +SD+ + FL + +LC + N
Sbjct: 1485 PDSSSDAEEDNLFLTQNDPEDMDLCSQMEN 1514
Score = 41 (19.5 bits), Expect = 3.7e-15, Sum P(3) = 3.7e-15
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 129 GFVHNLGEDGCTISVALESRHGDP-TFSKLFGKSVRIDRIQGLADTLTYERNCE 181
GF+HNL D S L+ ++G+ + + + K ++ + L +E NC+
Sbjct: 836 GFIHNLSLDP---SGVLDDKNGEQKSQNNVLPKEKQLKN-EELVIFSFHENNCK 885
>RGD|1304735 [details] [associations]
symbol:Mov10l1 "Mov10l1, Moloney leukemia virus 10-like 1,
homolog (mouse)" species:10116 "Rattus norvegicus" [GO:0007281
"germ cell development" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0007517 "muscle organ development" evidence=ISO]
[GO:0008283 "cell proliferation" evidence=ISO] [GO:0045786
"negative regulation of cell cycle" evidence=ISO] RGD:1304735
GeneTree:ENSGT00550000074391 InterPro:IPR026125
PANTHER:PTHR10887:SF6 IPI:IPI00560261 Ensembl:ENSRNOT00000050620
ArrayExpress:F1M357 Uniprot:F1M357
Length = 550
Score = 172 (65.6 bits), Expect = 5.5e-15, Sum P(3) = 5.5e-15
Identities = 80/278 (28%), Positives = 127/278 (45%)
Query: 411 DLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLER---------------AATLHEGV 455
D+ G+ +LAGD QL PVI SR A+ G+ VS+LER A + +
Sbjct: 270 DINGQ-IVLAGDPMQLGPVIKSRLAMAYGLNVSMLERLMSRPAYLRDENAFGACGAYNPL 328
Query: 456 LATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDT 515
L TKL YR + A+ + S+ Y L + D P +T LL
Sbjct: 329 LVTKLVKNYRSHSALLALPSRLFYHREL--------EVCAD-----PKVVTS---LLGWE 372
Query: 516 RLPYGSLSL---GCEEHLDLAGTG-SFYNEGEAEIVVHHVFSL---ICAGVSPSAIAVQS 568
+LP L G + G S+++ EA V+ + L + + VS I V +
Sbjct: 373 KLPRKGFPLIFHGVRGNEAREGRSPSWFSPAEAVQVMRYCCLLARNVSSQVSSKDIGVIT 432
Query: 569 PYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNT------LGAVGFL 622
PY QV+ ++ L ++ + ++V +++ FQG+E ++IS VRSN +GFL
Sbjct: 433 PYRKQVEKIKILLRNV-DLTDIKVGSVEEFQGQEYLVIVISTVRSNEDRFEDDRYFLGFL 491
Query: 623 GDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRH 660
+S+R NVAITR + V+ + + + LL +
Sbjct: 492 SNSKRFNVAITRPKALLIVLGNPHVLVRDPCFGALLEY 529
Score = 93 (37.8 bits), Expect = 5.5e-15, Sum P(3) = 5.5e-15
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 236 DDSQKKAIALGLNKK-RPL-LIIQGPPGTGKTGLLKEIIARA--VQQGERVLVTAPTNAA 291
+++QK A+ L+ RPL I+ GPPGTGKT + E + + R+LV AP+N+A
Sbjct: 111 NENQKLAVRRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHYALPDSRILVCAPSNSA 170
Query: 292 VDNMVEKLSD 301
D + +L +
Sbjct: 171 ADLVCLRLHE 180
Score = 48 (22.0 bits), Expect = 5.5e-15, Sum P(3) = 5.5e-15
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 299 LSDVGLNIVRVGNPARISPAVASK 322
+SD+ IV G+P ++ P + S+
Sbjct: 268 ISDINGQIVLAGDPMQLGPVIKSR 291
>DICTYBASE|DDB_G0274777 [details] [associations]
symbol:DDB_G0274777 "DNA replication helicase"
species:44689 "Dictyostelium discoideum" [GO:0006261 "DNA-dependent
DNA replication" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR014808
dictyBase:DDB_G0274777 Pfam:PF08696 GO:GO:0005634 GO:GO:0006261
EMBL:AAFI02000012 GO:GO:0004003 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 KO:K10742 RefSeq:XP_643888.1
ProteinModelPortal:Q86IV6 EnsemblProtists:DDB0233088 GeneID:8619314
KEGG:ddi:DDB_G0274777 InParanoid:Q86IV6 Uniprot:Q86IV6
Length = 1838
Score = 127 (49.8 bits), Expect = 5.5e-15, Sum P(3) = 5.5e-15
Identities = 28/66 (42%), Positives = 41/66 (62%)
Query: 584 LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVG-FLGDSRRMNVAITRACKHVAVV 642
L + +++ TID FQG++ D +IIS VRSN +G + D +RMNVA TRA K + V
Sbjct: 1745 LKKIENLDILTIDKFQGKDKDCIIISFVRSNEKKEIGELIKDWKRMNVAFTRAKKKLIFV 1804
Query: 643 CDSSTI 648
S++
Sbjct: 1805 GSKSSL 1810
Score = 108 (43.1 bits), Expect = 5.5e-15, Sum P(3) = 5.5e-15
Identities = 46/180 (25%), Positives = 87/180 (48%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
K +L GD QL P++ +++A + G+ +SL ++ +T H ++ L QYRM ++I S +
Sbjct: 1475 KSFVLVGDHHQLPPIVNNKEAGKLGLDISLFKQLSTSHPSSVSN-LYHQYRMCNSIMSLS 1533
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLD-----TRL---PYGSLSLGC 526
+ +Y L+ + S+L + T + T + LLD ++ P S+
Sbjct: 1534 NHLIYNNRLVCGNQSISNLSLQTNYYHNNNNTT-HIDLLDHINNWPQIICNPNSSVIFVN 1592
Query: 527 EEHLDLAGTGS----FYNEGEAEIVVHHVFSLICA-GVSPSAIAVQSPYVAQVQHLRERL 581
+ L+ + S FYN+ EA IV LI ++ S I + +P Q+ +++ +
Sbjct: 1593 TDQLNNSTESSNGDLFYNQTEANIVAILTNCLINKLNINQSQIGIITPIRFQLNFIKKSI 1652
Score = 100 (40.3 bits), Expect = 5.5e-15, Sum P(3) = 5.5e-15
Identities = 33/101 (32%), Positives = 57/101 (56%)
Query: 239 QKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEK 298
Q+ AI L+ K +I G PGTGKT L+ +I + G++VL+T+ T+ ++D+++ K
Sbjct: 1326 QRNAIIKTLSAK-DYSLIHGMPGTGKTTLVISLIHILWRLGKKVLITSFTHTSLDHLLLK 1384
Query: 299 LSDVGLNI--VRVGNPA-RISPAV-----ASKSLGEIVKSK 331
+ NI +RV + +I P++ +S G I +SK
Sbjct: 1385 FNKQYPNIEMLRVASSLNQIDPSLHRFTLEKQSFGNITQSK 1425
>SGD|S000004422 [details] [associations]
symbol:SEN1 "Presumed helicase and subunit of the Nrd1
complex (Nrd1p-Nab3p-Sen1p)" species:4932 "Saccharomyces
cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0043144
"snoRNA processing" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA;IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IMP;IDA] [GO:0031126 "snoRNA
3'-end processing" evidence=IMP] [GO:0006378 "mRNA polyadenylation"
evidence=IMP] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IEA;IMP] [GO:0016180 "snRNA processing"
evidence=IEA;IMP] [GO:0008186 "RNA-dependent ATPase activity"
evidence=ISS] [GO:0043141 "ATP-dependent 5'-3' DNA helicase
activity" evidence=ISS] [GO:0032575 "ATP-dependent 5'-3' RNA
helicase activity" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS] [GO:0035649 "Nrd1 complex" evidence=IDA]
[GO:0005657 "replication fork" evidence=IDA] [GO:0045005
"maintenance of fidelity involved in DNA-dependent DNA replication"
evidence=IMP] [GO:0031124 "mRNA 3'-end processing" evidence=IMP]
InterPro:IPR024714 SGD:S000004422 GO:GO:0005524 GO:GO:0005634
GO:GO:0019904 GO:GO:0006378 EMBL:BK006945 GO:GO:0008033
eggNOG:COG1112 EMBL:U20939 EMBL:U21094 GO:GO:0006364 GO:GO:0006369
GO:GO:0031126 GO:GO:0043141 KO:K00088 RefSeq:NP_013536.3
GeneID:851152 KEGG:sce:YLR432W GO:GO:0016180 KO:K10706
RefSeq:NP_013534.3 GeneID:851150 KEGG:sce:YLR430W GO:GO:0035649
GO:GO:0032575 InterPro:IPR024481 PANTHER:PTHR10887:SF164
Pfam:PF12726 EMBL:M74589 PIR:S53416 ProteinModelPortal:Q00416
SMR:Q00416 DIP:DIP-881N IntAct:Q00416 MINT:MINT-427565
STRING:Q00416 PaxDb:Q00416 PeptideAtlas:Q00416 EnsemblFungi:YLR430W
CYGD:YLR430w GeneTree:ENSGT00580000081652 HOGENOM:HOG000246755
OMA:SAIIPLR OrthoDB:EOG4MPMZ6 NextBio:967924 Genevestigator:Q00416
GermOnline:YLR430W Uniprot:Q00416
Length = 2231
Score = 203 (76.5 bits), Expect = 5.7e-15, Sum P(3) = 5.7e-15
Identities = 75/230 (32%), Positives = 104/230 (45%)
Query: 414 GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASW 473
GKRCI+ GD QL P +LS A SL R L L QYRM+ +I+ +
Sbjct: 1608 GKRCIMVGDPNQLPPTVLSGAASNFKYNQSLFVRMEKNSSPYL---LDVQYRMHPSISKF 1664
Query: 474 ASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLA 533
S E Y G L + +L P W PL PY + A
Sbjct: 1665 PSSEFYQGRLKDGPGM--DILNKRP-----WHQLEPLA------PYKFFDIISGRQEQNA 1711
Query: 534 GTGSFYNEGEAEI---VVHHVFSLICAGVS-PSAIAVQSPYVAQVQHLRERLDDLPEAA- 588
T S+ N E + +V ++F + I + SPY Q+Q +R+
Sbjct: 1712 KTMSYTNMEEIRVAIELVDYLFRKFDNKIDFTGKIGIISPYREQMQKMRKEFARYFGGMI 1771
Query: 589 --GVEVATIDSFQGREADAVIISMVRSN-TLGAVGFLGDSRRMNVAITRA 635
++ TID FQG+E + ++IS VR++ T +VGFL D RRMNVA+TRA
Sbjct: 1772 NKSIDFNTIDGFQGQEKEIILISCVRADDTKSSVGFLKDFRRMNVALTRA 1821
Score = 70 (29.7 bits), Expect = 5.7e-15, Sum P(3) = 5.7e-15
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEII 272
SQ +AI ++K+ +IQGPPGTGKT + II
Sbjct: 1338 SQAEAIVNSVSKEG-FSLIQGPPGTGKTKTILGII 1371
Score = 61 (26.5 bits), Expect = 5.7e-15, Sum P(3) = 5.7e-15
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 280 ERVLVTAPTNAAVDNMVEKLSDVGL----------NIVRVGNPARISPAVASKSLGEIVK 329
+++L+ AP+NAAVD + +L G+ +VRVG ++ A+ +L E+V
Sbjct: 1404 QKILICAPSNAAVDEICLRLKS-GVYDKQGHQFKPQLVRVGRSDVVNVAIKDLTLEELVD 1462
Query: 330 SKL 332
++
Sbjct: 1463 KRI 1465
>UNIPROTKB|Q5ZKD7 [details] [associations]
symbol:MOV10 "Putative helicase MOV-10" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0035279 "mRNA cleavage involved in gene silencing
by miRNA" evidence=ISS] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISS] GO:GO:0005524 GO:GO:0003723 GO:GO:0004386
GO:GO:0000932 GO:GO:0035279 eggNOG:COG1112 InterPro:IPR026122
PANTHER:PTHR10887:SF17 HOGENOM:HOG000239755 OrthoDB:EOG4SXNC4
CTD:4343 EMBL:AJ720147 IPI:IPI00594294 RefSeq:NP_001012861.1
UniGene:Gga.1182 ProteinModelPortal:Q5ZKD7 STRING:Q5ZKD7
PRIDE:Q5ZKD7 GeneID:419872 KEGG:gga:419872 InParanoid:Q5ZKD7
NextBio:20822865 Uniprot:Q5ZKD7
Length = 967
Score = 170 (64.9 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 69/225 (30%), Positives = 103/225 (45%)
Query: 414 GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLA-----------TKLTT 462
G + +LAGD QL PV S A + G+G SLLER LH + A TKL
Sbjct: 667 GGQLVLAGDPQQLGPVPRSPLAAQHGLGTSLLERLM-LHNALYAKSDEGYNPQFVTKLLW 725
Query: 463 QYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSL 522
YR + AI ++ Y L + S V + TW + P + +P
Sbjct: 726 NYRSHKAILKVPNELFYDSEL--KAYEGSEPDVRNFYC--TW-EELP----NRGVPIIFH 776
Query: 523 SLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLI-------CAGVSPSAIAVQSPYVAQVQ 575
+ C E A + SF+N E E+VV ++ L+ C +SP I + SPY QV+
Sbjct: 777 GV-CGEDEREAKSPSFFNTAEIEVVVQYLQKLLQSQGRRGCPTISPKEIGIISPYRKQVE 835
Query: 576 HLRERLDD-------LPEAAGVEVATIDSFQGREADAVIISMVRS 613
+R + LP+ ++V +++ FQG+E ++IS VRS
Sbjct: 836 KIRLAITSKDPVLRALPDIGQLKVGSVEEFQGQERRVILISTVRS 880
Score = 141 (54.7 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 38/121 (31%), Positives = 65/121 (53%)
Query: 556 CAGVSPSAIAVQSPYVAQVQHLRERLDD-------LPEAAGVEVATIDSFQGREADAVII 608
C +SP I + SPY QV+ +R + LP+ ++V +++ FQG+E ++I
Sbjct: 816 CPTISPKEIGIISPYRKQVEKIRLAITSKDPVLRALPDIGQLKVGSVEEFQGQERRVILI 875
Query: 609 SMVRS-------NTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
S VRS + +GFL + +R+NVA+TRA + VV +++ + + R LR+
Sbjct: 876 STVRSCSEYLQLDQTFRLGFLKNPKRLNVALTRAKALLIVVGNAAVLSKDPHWHRFLRYC 935
Query: 662 R 662
R
Sbjct: 936 R 936
Score = 104 (41.7 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 25/61 (40%), Positives = 36/61 (59%)
Query: 241 KAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ--QGERVLVTAPTNAAVDNMVEK 298
K I G+++ P LI GPPGTGKT L E I + + R+L AP+N+A D + ++
Sbjct: 500 KHIVTGMSRPAPYLIF-GPPGTGKTVTLVEAIKQVWSCFKDARILACAPSNSAADLLCQR 558
Query: 299 L 299
L
Sbjct: 559 L 559
>UNIPROTKB|Q6ZU11 [details] [associations]
symbol:Q6ZU11 "Uncharacterized protein FLJ44066"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
InterPro:IPR010666 Pfam:PF06839 GO:GO:0016021 GO:GO:0008270
eggNOG:COG1112 UniGene:Hs.713663 EMBL:AK126054 EMBL:AL137700
IPI:IPI00300207 IPI:IPI00880006 PIR:T46441 RefSeq:NP_060862.3
UniGene:Hs.380346 ProteinModelPortal:Q6ZU11 SMR:Q6ZU11
PhosphoSite:Q6ZU11 DMDM:74711848 PaxDb:Q6ZU11 PRIDE:Q6ZU11
GeneID:55345 KEGG:hsa:55345 CTD:55345 HPA:HPA030706
neXtProt:NX_Q6ZU11 PharmGKB:PA144596502 HOGENOM:HOG000155510
InParanoid:Q6ZU11 PhylomeDB:Q6ZU11 GenomeRNAi:55345 NextBio:59679
ArrayExpress:Q6ZU11 Bgee:Q6ZU11 Genevestigator:Q6ZU11
Uniprot:Q6ZU11
Length = 926
Score = 192 (72.6 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 45/128 (35%), Positives = 76/128 (59%)
Query: 537 SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQ---HLRERLD-DLPEAAGVEV 592
SF+N EA + + SLI +G++ S I V + Y +Q+ HL +D P+ V+V
Sbjct: 753 SFHNVAEATFTLKLIQSLIASGIAGSMIGVITLYKSQMYKLCHLLSAVDFHHPDIKTVQV 812
Query: 593 ATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT 652
+T+D+FQG E + +I+S VR+ VGF+ +RMNVA+TR +H+ +V + + + N
Sbjct: 813 STVDAFQGAEKEIIILSCVRTRQ---VGFIDSEKRMNVALTRGKRHLLIVGNLACLRKNQ 869
Query: 653 FLARLLRH 660
R+++H
Sbjct: 870 LWGRVIQH 877
Score = 135 (52.6 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 55/208 (26%), Positives = 99/208 (47%)
Query: 415 KRCILAGDQCQLAPVIL-SRKALEGGIGVSLLERAATL-HEGVLATKLTTQYRMNDAIAS 472
++ IL GD QL P I S A E G+ +L +R + H+ +L L TQYR + AI++
Sbjct: 651 EKLILVGDPKQLPPTIQGSDAAHENGLEQTLFDRLCLMGHKPIL---LRTQYRCHPAISA 707
Query: 473 WASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDL 532
A+ Y G+L++ T +P ++ W+ L + + G + +
Sbjct: 708 IANDLFYKGALMNGVTEIER----SPLLE--WLPT--LCFYNVK---GLEQIERDNSFHN 756
Query: 533 AGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD-DLPEAAGVE 591
+F +++ + S I AG I + + ++ HL +D P+ V+
Sbjct: 757 VAEATF----TLKLIQSLIASGI-AGSMIGVITLYKSQMYKLCHLLSAVDFHHPDIKTVQ 811
Query: 592 VATIDSFQGREADAVIISMVRSNTLGAV 619
V+T+D+FQG E + +I+S VR+ +G +
Sbjct: 812 VSTVDAFQGAEKEIIILSCVRTRQVGFI 839
Score = 80 (33.2 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 28/87 (32%), Positives = 44/87 (50%)
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGER-------------VLVTAPTNAAVDNMVEK 298
P+ II G G GK+ LL +I VQ E+ +L+++ TN AVD ++
Sbjct: 470 PITIIHGVFGAGKSYLLAVVILFFVQLFEKSEAPTIGNARPWKLLISSSTNVAVDRVLLG 529
Query: 299 LSDVGL-NIVRVGNPARISPAVASKSL 324
L +G N +RVG+ +I+ + SL
Sbjct: 530 LLSLGFENFIRVGSVRKIAKPILPYSL 556
Score = 39 (18.8 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 13/56 (23%), Positives = 24/56 (42%)
Query: 286 APTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFER 341
A N + ++L +G + + R PA+++ + K L + V E ER
Sbjct: 672 AHENGLEQTLFDRLCLMGHKPILLRTQYRCHPAISAIANDLFYKGALMNGVTEIER 727
>UNIPROTKB|F1RXR7 [details] [associations]
symbol:MOV10L1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007281
"germ cell development" evidence=IEA] GO:GO:0007283 GO:GO:0007281
GeneTree:ENSGT00550000074391 OMA:NMSGVTL InterPro:IPR026125
PANTHER:PTHR10887:SF6 EMBL:BX321913 Ensembl:ENSSSCT00000001066
Uniprot:F1RXR7
Length = 1211
Score = 177 (67.4 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 80/250 (32%), Positives = 118/250 (47%)
Query: 411 DLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLER---------------AATLHEGV 455
D+ G+ ILAGD QL PVI SR A+ G+ VS+LER A + +
Sbjct: 903 DIDGQ-IILAGDPMQLGPVIKSRLAMAYGLNVSMLERLMARPAYLRDEDAFGACGAYNPL 961
Query: 456 LATKLTTQYRMNDAIASWASKEMYGGSL--ISSSTVASHLLVDTPFVKPTWITQCPLLLL 513
L TKL YR + A+ + S+ Y L + V + LL + + PL+
Sbjct: 962 LVTKLVKNYRSHSALLALPSRLFYHRELEVCADPKVVTSLLGWEKLPRKGF----PLVFH 1017
Query: 514 DTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSL---ICAGVSPSAIAVQSPY 570
R G E + S++N EA V+ + L + + VS I V +PY
Sbjct: 1018 GVR--------GTEARE--GRSPSWFNPTEAVQVMRYCCLLARSVSSQVSAGDIGVITPY 1067
Query: 571 VAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNT------LGAVGFLGD 624
QV+ ++ L ++ A V+V +++ FQG+E +IIS VRSN +GFL +
Sbjct: 1068 RKQVEKIKILLRNVG-LAEVKVGSVEEFQGQEYLVIIISTVRSNEDRFEDDRYFLGFLSN 1126
Query: 625 SRRMNVAITR 634
S+R NVAITR
Sbjct: 1127 SKRFNVAITR 1136
Score = 98 (39.6 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 31/100 (31%), Positives = 51/100 (51%)
Query: 228 DGIMGKTFDDSQKKAIALGLNKK-RPL-LIIQGPPGTGKTGLLKEIIARAVQQ--GERVL 283
+G +++Q+ A+ L+ RPL ++ GPPGTGKT + E + + R+L
Sbjct: 736 EGFFNPMLNENQQLAVKRILSGDCRPLPYVLFGPPGTGKTVTVIEAVLQVFHALPDSRIL 795
Query: 284 VTAPTNAAVDNMVEKLSDV-GLN---IVRVGNPARISPAV 319
V AP+N+A D + +L + GL +VRV R +
Sbjct: 796 VCAPSNSAADLVCLRLHESRGLRPGAMVRVNATCRFEETI 835
Score = 46 (21.3 bits), Expect = 4.8e-09, Sum P(3) = 4.8e-09
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 299 LSDVGLNIVRVGNPARISPAVASK 322
+SD+ I+ G+P ++ P + S+
Sbjct: 901 ISDIDGQIILAGDPMQLGPVIKSR 924
Score = 45 (20.9 bits), Expect = 4.8e-09, Sum P(3) = 4.8e-09
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 106 SPGDMVCVRVCDSRG 120
S D+VC+R+ +SRG
Sbjct: 802 SAADLVCLRLHESRG 816
>ZFIN|ZDB-GENE-070424-144 [details] [associations]
symbol:si:ch211-183d5.1 "si:ch211-183d5.1"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR026855 ZFIN:ZDB-GENE-070424-144
GO:GO:0004386 PANTHER:PTHR10887:SF16 GeneTree:ENSGT00550000074391
EMBL:AL935128 IPI:IPI00492493 Ensembl:ENSDART00000144897
Uniprot:F1QAI5
Length = 517
Score = 180 (68.4 bits), Expect = 2.8e-14, Sum P(3) = 2.8e-14
Identities = 85/277 (30%), Positives = 123/277 (44%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
++ +L GD Q+ P++ G+ SL ER L A L TQYRM+ I S+
Sbjct: 226 QQIVLLGDHQQIRPIVQCGHVKNKGMEKSLFERYMDL-----ANMLDTQYRMHAEICSFP 280
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAG 534
S E Y G L + + L++ +PT +L SL + E+
Sbjct: 281 SDEFYDGKLKTGAERGPCCLLNKS-KEPT-----AMLFGHIEGKEVSLVVSTEK----GN 330
Query: 535 TGSFYNEGEAEIVVHHVFSLIC-AGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVA 593
S N EAE V LI +GVSP IA+ +PY AQV ++ L+ V V
Sbjct: 331 ENSMANTEEAEQAVCVADLLIKQSGVSPEHIAILTPYNAQVSEIKMTLEK-KNVRNVTVC 389
Query: 594 TIDSFQGREADAVIISMVRS-NT--------------LGA-VGFLGDSRRMNVAITRACK 637
T+ QG E VI+S VRS +T LG +GF+ D+ ++NVAITRA
Sbjct: 390 TVMKSQGSEWPYVIVSTVRSCSTSDIQAYRVRPHKAWLGKRLGFVTDANQVNVAITRAQD 449
Query: 638 HVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGS 674
+ ++ +S + RLL H Y+ + P S
Sbjct: 450 GLCILGNSDLLRCCELWDRLLDH--YYRKSCVVNPAS 484
Score = 85 (35.0 bits), Expect = 2.8e-14, Sum P(3) = 2.8e-14
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKT 265
SQKKA+ + K+P +IQGPPGTGKT
Sbjct: 4 SQKKAVKEAM--KKPFTVIQGPPGTGKT 29
Score = 39 (18.8 bits), Expect = 2.8e-14, Sum P(3) = 2.8e-14
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 282 VLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARI 315
+L P+N +VD + E+L L + V P RI
Sbjct: 67 ILYCGPSNKSVDIVAEQL----LKLSGVLKPLRI 96
>FB|FBgn0033889 [details] [associations]
symbol:CG6701 species:7227 "Drosophila melanogaster"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR007087 InterPro:IPR015880
PROSITE:PS00028 SMART:SM00355 GO:GO:0008270 GO:GO:0005622
FlyBase:FBgn0033889 ChiTaRS:CG6701 EMBL:AY128442
ProteinModelPortal:Q8MQQ9 STRING:Q8MQQ9 PRIDE:Q8MQQ9
InParanoid:Q8MQQ9 ArrayExpress:Q8MQQ9 Bgee:Q8MQQ9 Uniprot:Q8MQQ9
Length = 1261
Score = 184 (69.8 bits), Expect = 5.4e-14, Sum P(2) = 5.4e-14
Identities = 64/260 (24%), Positives = 123/260 (47%)
Query: 418 ILAGDQCQLAPVILSRKALEGGIGVSLLERAATL----------HEGVLATKLTTQYRMN 467
IL+GD QL PV+ S++A E G+G++L ER + + T+L +R +
Sbjct: 718 ILSGDHKQLGPVLQSQRANEWGLGLTLFERLLQRKCYQVEEDGSYNASVQTRLIRNFRSH 777
Query: 468 DAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE 527
I S + Y G L + + + F P P++ +G+
Sbjct: 778 PEIVSLYNNMYYEGHLRTEAPMEIVCRFHNWFYLPN--ATFPIMFHSV---FGTT----- 827
Query: 528 EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVS-----PSAIAVQSPYVAQVQHLRERLD 582
++ + S N E ++V+ +V L+ G++ + I + SPY Q Q ++E+L+
Sbjct: 828 --MNTKSSVSLCNNKEIDVVMDYVKDLMYFGLNGEKLLQTDIGIISPYKNQYQRIQEQLN 885
Query: 583 DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVV 642
+ + ++ +++ FQG+E +I+S VRS T +GFL + RR+NV ++R + ++
Sbjct: 886 -MRNWSQIDCGSVELFQGKEKHVIIVSFVRSFT-PKLGFLNNERRLNVLLSRPISLLILI 943
Query: 643 CDSSTICHNTFLARLLRHIR 662
+ T+ N+ ++ R
Sbjct: 944 GNPRTLSQNSDFQHIIEMCR 963
Score = 87 (35.7 bits), Expect = 5.4e-14, Sum P(2) = 5.4e-14
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 241 KAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARA-VQQGE-RVLVTAPTNAAVDNMVEK 298
+ IAL K P ++ GPPGTGKT + E I + + + E +LV A +N A D + +
Sbjct: 549 RQIALSPRLKAPYIVF-GPPGTGKTSTIVEAIYQLYINRPETHILVLAGSNTACDEVALR 607
Query: 299 L 299
L
Sbjct: 608 L 608
Score = 37 (18.1 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 325 GEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIR 364
GEI + LAS V + K + Q ++ +L+ ++
Sbjct: 519 GEIPNTPLASGVLQLNNKLISTNPEQMQAVRQIALSPRLK 558
>UNIPROTKB|F1SBP9 [details] [associations]
symbol:MOV10 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0035279 "mRNA cleavage involved in gene silencing by
miRNA" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] GO:GO:0000932 GO:GO:0035279 InterPro:IPR026122
PANTHER:PTHR10887:SF17 GeneTree:ENSGT00550000074391 CTD:4343
OMA:VRFFKLD EMBL:CU861480 RefSeq:XP_003481536.1 UniGene:Ssc.19573
Ensembl:ENSSSCT00000007422 GeneID:100521086 KEGG:ssc:100521086
Uniprot:F1SBP9
Length = 1001
Score = 133 (51.9 bits), Expect = 5.9e-14, Sum P(3) = 5.9e-14
Identities = 43/136 (31%), Positives = 71/136 (52%)
Query: 537 SFYNEGEAEIVVHHVFSLIC-------AGVSPSAIAVQSPYVAQVQHLRE---RLDD--- 583
SF+N EA V ++ L+ A +SP ++ V SPY QV+ +R +LD
Sbjct: 793 SFFNPEEAATVTSYLKQLLTSSSKKGKARLSPRSVGVISPYRKQVEKIRHCITKLDKELR 852
Query: 584 -LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGA-------VGFLGDSRRMNVAITRA 635
L + ++V +++ FQG+E ++IS VRS+ +GFL + +R NVA+TRA
Sbjct: 853 GLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRA 912
Query: 636 CKHVAVVCDSSTICHN 651
+ VV + + H+
Sbjct: 913 KALLIVVGNPLLLGHD 928
Score = 101 (40.6 bits), Expect = 5.9e-14, Sum P(3) = 5.9e-14
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 241 KAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGER--VLVTAPTNAAVDNMVEK 298
K I +G + P +I GPPGTGKT L E I + V+ + +L AP+N+ D + ++
Sbjct: 508 KHIVMGTTRPAPYIIF-GPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQR 566
Query: 299 LS-DVGLNIVRVGNPAR 314
L + +I R+ P+R
Sbjct: 567 LRVHLPSSIYRLLAPSR 583
Score = 82 (33.9 bits), Expect = 5.9e-14, Sum P(3) = 5.9e-14
Identities = 29/89 (32%), Positives = 41/89 (46%)
Query: 411 DLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH-------EGV---LATKL 460
D G + +LAGD QL PV+ + G+G SLLER T + +G TKL
Sbjct: 669 DNPGGQLVLAGDPRQLGPVLRCPLTQKHGLGYSLLERLLTYNALYKKGPDGYNPQFITKL 728
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTV 489
YR + I ++ Y G L + + V
Sbjct: 729 LRNYRSHPTILDIPNQLYYEGELQACADV 757
>UNIPROTKB|G3X7G5 [details] [associations]
symbol:MOV10L1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007281
"germ cell development" evidence=IEA] GO:GO:0007283 GO:GO:0007281
GeneTree:ENSGT00550000074391 OMA:NMSGVTL InterPro:IPR026125
PANTHER:PTHR10887:SF6 EMBL:DAAA02015125 EMBL:DAAA02015122
EMBL:DAAA02015123 EMBL:DAAA02015124 Ensembl:ENSBTAT00000027109
Uniprot:G3X7G5
Length = 1214
Score = 184 (69.8 bits), Expect = 6.1e-14, Sum P(3) = 6.1e-14
Identities = 81/274 (29%), Positives = 126/274 (45%)
Query: 413 VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLER---------------AATLHEGVLA 457
V + +LAGD QL PVI SR A+ G+ VS+LER A + +L
Sbjct: 909 VSGQIVLAGDPMQLGPVIKSRLAMAYGLNVSMLERLMSRPAYLRDEDAFGACGAYNPLLV 968
Query: 458 TKLTTQYRMNDAIASWASKEMYGGSL--ISSSTVASHLLVDTPFVKPTWITQCPLLLLDT 515
TKL YR + A+ + S+ Y L + TV + LL + + PL+
Sbjct: 969 TKLVKNYRSHSALLALPSRLFYHRELEVCADPTVVASLLGWEKLPRKGF----PLIFHGV 1024
Query: 516 RLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSL---ICAGVSPSAIAVQSPYVA 572
R G E + S++N EA V+ + L + + VS I V +PY
Sbjct: 1025 R--------GNEARE--GRSPSWFNPAEAVQVMRYCCMLARSVSSQVSARDIGVITPYRK 1074
Query: 573 QVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNT------LGAVGFLGDSR 626
QV+ ++ L ++ + ++V +++ FQG+E VIIS VRSN +GFL +S+
Sbjct: 1075 QVEKIKILLRNV-DLMDIKVGSVEEFQGQEYLVVIISTVRSNEDRFEDDRYFLGFLSNSK 1133
Query: 627 RMNVAITRACKHVAVVCDSSTICHNTFLARLLRH 660
R NVAITR + V+ + + + LL +
Sbjct: 1134 RFNVAITRPKALLIVLGNPHVLVRDPCFGALLEY 1167
Score = 95 (38.5 bits), Expect = 6.1e-14, Sum P(3) = 6.1e-14
Identities = 28/85 (32%), Positives = 47/85 (55%)
Query: 236 DDSQKKAIALGLNKK-RPL-LIIQGPPGTGKTGLLKEIIARAVQQ--GERVLVTAPTNAA 291
+++QK A+ L+ RP+ ++ GPPGTGKT + E I + R+LV AP+N+A
Sbjct: 749 NENQKLAVRRILSGDCRPIPYVLFGPPGTGKTVTIIEAILQVFHALPDSRILVCAPSNSA 808
Query: 292 VDNMVEKLSDVGLNIVRVGNPARIS 316
D + +L + +R G R++
Sbjct: 809 ADLVCLRLHES--RALRPGTMVRVN 831
Score = 48 (22.0 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 299 LSDVGLNIVRVGNPARISPAVASK 322
+SDV IV G+P ++ P + S+
Sbjct: 906 VSDVSGQIVLAGDPMQLGPVIKSR 929
Score = 39 (18.8 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 106 SPGDMVCVRVCDSR 119
S D+VC+R+ +SR
Sbjct: 807 SAADLVCLRLHESR 820
Score = 37 (18.1 bits), Expect = 6.1e-14, Sum P(3) = 6.1e-14
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 173 TLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLE 215
T T E C AL+L K + + + K V W+E
Sbjct: 255 TETAEEVCGALLLKNKGDIEVTRMTNFGTLKEGESKNMVIWVE 297
>MGI|MGI:2138982 [details] [associations]
symbol:Znfx1 "zinc finger, NFX1-type containing 1"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] [GO:0046872 "metal
ion binding" evidence=IEA] MGI:MGI:2138982 GO:GO:0046872
EMBL:CH466551 eggNOG:COG1112 GeneTree:ENSGT00700000104467
EMBL:AL591711 CTD:57169 HOVERGEN:HBG052201 OMA:CVRLCSE
EMBL:AK149249 EMBL:AK150223 EMBL:AK157301 EMBL:BC025488
IPI:IPI00660406 RefSeq:NP_001028368.2 UniGene:Mm.297074
ProteinModelPortal:Q8R151 STRING:Q8R151 PhosphoSite:Q8R151
PaxDb:Q8R151 PRIDE:Q8R151 Ensembl:ENSMUST00000048988 GeneID:98999
KEGG:mmu:98999 HOGENOM:HOG000231023 InParanoid:A2A5R3
NextBio:353739 Bgee:Q8R151 CleanEx:MM_ZNFX1 Genevestigator:Q8R151
GermOnline:ENSMUSG00000039501 Uniprot:Q8R151
Length = 1909
Score = 170 (64.9 bits), Expect = 7.8e-14, Sum P(2) = 7.8e-14
Identities = 42/126 (33%), Positives = 68/126 (53%)
Query: 537 SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATID 596
S N+ EA VV L+C PS I + + Y Q+ LR +L + AG++V +D
Sbjct: 1120 SHQNQHEAHFVVELCQYLLCQEYLPSQITILTTYTGQLFCLR-KLMPVKTFAGIKVHVVD 1178
Query: 597 SFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLAR 656
+QG E D +++S+VRSN G VGFL R+ VA++RA K + + + + +R
Sbjct: 1179 KYQGEENDIILLSLVRSNQEGKVGFLQIPNRICVALSRAKKGMYCIGNMQMLAKVPLWSR 1238
Query: 657 LLRHIR 662
++ +R
Sbjct: 1239 IIHTLR 1244
Score = 104 (41.7 bits), Expect = 7.8e-14, Sum P(2) = 7.8e-14
Identities = 36/85 (42%), Positives = 48/85 (56%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGL-LKEIIA----RAVQQGER----VLVTA 286
DDSQ +A+ L K+ L IIQGPPGTGKT + LK + A ++V Q +LV
Sbjct: 592 DDSQMEALQFALTKE--LAIIQGPPGTGKTYVGLKIVQALLTNKSVWQINTQTFPILVVC 649
Query: 287 PTNAAVDNMVEKLSDVG-LNIVRVG 310
TN A+D +E + +IVRVG
Sbjct: 650 YTNHALDQFLEGIYGCQKTSIVRVG 674
Score = 37 (18.1 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVA 320
++ E+L V + VR+ R+ P +A
Sbjct: 1047 SLFERLVKVNIPFVRLNYQHRMRPEIA 1073
>UNIPROTKB|J9P7Z9 [details] [associations]
symbol:MOV10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 SMART:SM00382 GO:GO:0005524 GO:GO:0017111
InterPro:IPR026122 PANTHER:PTHR10887:SF17
GeneTree:ENSGT00550000074391 EMBL:AAEX03011080 EMBL:AAEX03011081
Ensembl:ENSCAFT00000044224 Uniprot:J9P7Z9
Length = 983
Score = 135 (52.6 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 66/261 (25%), Positives = 105/261 (40%)
Query: 241 KAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGER--VLVTAPTNAAVDNMVEK 298
K I +G + P +I GPPGTGKT L E I + V+ + +L AP+N+ D + ++
Sbjct: 488 KYIIMGTTRPAPYIIF-GPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQR 546
Query: 299 LSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDS 358
L RV P+ I +A +V + ++ KK D ++ L++
Sbjct: 547 L--------RVHLPSSIYRLLAPSRDIRMVPEDIKP-CCNWDAKKGDYVFPAKKKLQEYR 597
Query: 359 LAAGIRXXXXXXXXXXXXXXXXXXXXXXSSAQVVLATNTGAADPLIRRLDTFDLVGKRCI 418
+ + + + A L+ +T D G + +
Sbjct: 598 VLITTLITASRLVSAQFPIDHFTHIFIDEAGHSMEPESLVAIAGLMEVKET-DNPGGQLV 656
Query: 419 LAGDQCQLAPVILSRKALEGGIGVSLLERAATLH-------EGV---LATKLTTQYRMND 468
LAGD QL PV+ S + G+G SLLER T + G TKL YR +
Sbjct: 657 LAGDPRQLGPVLRSPLTQKHGLGYSLLERLLTYNALYKKGSNGYNPQFITKLLRNYRSHP 716
Query: 469 AIASWASKEMYGGSLISSSTV 489
I ++ Y G L + + V
Sbjct: 717 TILDIPNQLYYEGELQACADV 737
Score = 132 (51.5 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 43/136 (31%), Positives = 71/136 (52%)
Query: 537 SFYNEGEAEIVVHHVFSLIC-------AGVSPSAIAVQSPYVAQVQHLRE---RLDD--- 583
SF+N EA V ++ L+ A +SP ++ V SPY QV+ +R +LD
Sbjct: 773 SFFNPEEAATVTSYLKLLLAPSSKKGKARLSPRSVGVISPYRKQVEKIRHCITKLDKELR 832
Query: 584 -LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGA-------VGFLGDSRRMNVAITRA 635
L + ++V +++ FQG+E ++IS VRS+ +GFL + +R NVA+TRA
Sbjct: 833 GLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRA 892
Query: 636 CKHVAVVCDSSTICHN 651
+ VV + + H+
Sbjct: 893 KALLIVVGNPLLLGHD 908
>ZFIN|ZDB-GENE-091230-8 [details] [associations]
symbol:mov10a "Moloney leukemia virus 10, homolog, a"
species:7955 "Danio rerio" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 SMART:SM00382 ZFIN:ZDB-GENE-091230-8
GO:GO:0005524 GO:GO:0017111 InterPro:IPR026122
PANTHER:PTHR10887:SF17 GeneTree:ENSGT00550000074391 EMBL:CU469362
IPI:IPI00481619 RefSeq:XP_002662576.2 UniGene:Dr.155704
Ensembl:ENSDART00000064826 GeneID:566858 KEGG:dre:566858 CTD:566858
NextBio:20888414 Bgee:E7FAV9 Uniprot:E7FAV9
Length = 1001
Score = 146 (56.5 bits), Expect = 1.2e-13, Sum P(4) = 1.2e-13
Identities = 41/133 (30%), Positives = 76/133 (57%)
Query: 533 AGTGSFYNEGEAEIVVHHVFSLI-CAG------VSPSAIAVQSPYVAQVQHLRERLD--- 582
A + SF+N E E++V+++ +L+ G + P+ I + +PY QV+ +R+ L+
Sbjct: 805 ANSPSFFNVTEIEVIVNYLNNLMQTQGKKGLPKLGPNDIGIIAPYRKQVEKIRKALNTVG 864
Query: 583 DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGA-------VGFLGDSRRMNVAITRA 635
+L + ++V +++ FQG+E +I+S VRS+ +GFL + +R NVA+TRA
Sbjct: 865 ELKKWKDIKVGSVEEFQGQERKVIIVSTVRSSVNYVKMDQDFNIGFLSNEKRFNVAMTRA 924
Query: 636 CKHVAVVCDSSTI 648
K + +V + I
Sbjct: 925 -KGLLIVVGNPVI 936
Score = 94 (38.1 bits), Expect = 1.2e-13, Sum P(4) = 1.2e-13
Identities = 31/86 (36%), Positives = 45/86 (52%)
Query: 243 IALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGER--VLVTAPTNAAVDNMVEKL- 299
I G ++ P LI GPPGTGKT + E I + + + +L AP+N+A D + E+L
Sbjct: 527 ILSGSSRPAPYLIF-GPPGTGKTVTVVEAIKQVDKSKAQSHILACAPSNSACDLLCERLL 585
Query: 300 SDVGLN-IVRVGNPARISPAVASKSL 324
V + I R+ P+R V K L
Sbjct: 586 GHVDAHRIYRLCAPSRDPRTVPQKLL 611
Score = 70 (29.7 bits), Expect = 1.2e-13, Sum P(4) = 1.2e-13
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 418 ILAGDQCQLAPVILSRKALEGGIGVSLLER 447
+LAGD QL PV+ S A G+G SLLER
Sbjct: 689 VLAGDPQQLGPVLRSPLAQLHGLGQSLLER 718
Score = 44 (20.5 bits), Expect = 1.2e-13, Sum P(4) = 1.2e-13
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 173 TLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDV 211
T+T ++ + L++L+ G+ + PS+ L GDK +V
Sbjct: 386 TMTLDKTNKKLLILKVPGVAENRPSV-----LRGDKLNV 419
>UNIPROTKB|F1P7T4 [details] [associations]
symbol:MOV10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0035279 "mRNA cleavage involved in gene
silencing by miRNA" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] InterPro:IPR003593 SMART:SM00382 GO:GO:0005524
GO:GO:0017111 GO:GO:0000932 GO:GO:0035279 InterPro:IPR026122
PANTHER:PTHR10887:SF17 GeneTree:ENSGT00550000074391 CTD:4343
OMA:VRFFKLD EMBL:AAEX03011080 EMBL:AAEX03011081 RefSeq:XP_540337.3
Ensembl:ENSCAFT00000021339 GeneID:483219 KEGG:cfa:483219
Uniprot:F1P7T4
Length = 1003
Score = 135 (52.6 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 66/261 (25%), Positives = 105/261 (40%)
Query: 241 KAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGER--VLVTAPTNAAVDNMVEK 298
K I +G + P +I GPPGTGKT L E I + V+ + +L AP+N+ D + ++
Sbjct: 508 KYIIMGTTRPAPYIIF-GPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQR 566
Query: 299 LSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDS 358
L RV P+ I +A +V + ++ KK D ++ L++
Sbjct: 567 L--------RVHLPSSIYRLLAPSRDIRMVPEDIKP-CCNWDAKKGDYVFPAKKKLQEYR 617
Query: 359 LAAGIRXXXXXXXXXXXXXXXXXXXXXXSSAQVVLATNTGAADPLIRRLDTFDLVGKRCI 418
+ + + + A L+ +T D G + +
Sbjct: 618 VLITTLITASRLVSAQFPIDHFTHIFIDEAGHSMEPESLVAIAGLMEVKET-DNPGGQLV 676
Query: 419 LAGDQCQLAPVILSRKALEGGIGVSLLERAATLH-------EGV---LATKLTTQYRMND 468
LAGD QL PV+ S + G+G SLLER T + G TKL YR +
Sbjct: 677 LAGDPRQLGPVLRSPLTQKHGLGYSLLERLLTYNALYKKGSNGYNPQFITKLLRNYRSHP 736
Query: 469 AIASWASKEMYGGSLISSSTV 489
I ++ Y G L + + V
Sbjct: 737 TILDIPNQLYYEGELQACADV 757
Score = 132 (51.5 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 43/136 (31%), Positives = 71/136 (52%)
Query: 537 SFYNEGEAEIVVHHVFSLIC-------AGVSPSAIAVQSPYVAQVQHLRE---RLDD--- 583
SF+N EA V ++ L+ A +SP ++ V SPY QV+ +R +LD
Sbjct: 793 SFFNPEEAATVTSYLKLLLAPSSKKGKARLSPRSVGVISPYRKQVEKIRHCITKLDKELR 852
Query: 584 -LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGA-------VGFLGDSRRMNVAITRA 635
L + ++V +++ FQG+E ++IS VRS+ +GFL + +R NVA+TRA
Sbjct: 853 GLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRA 912
Query: 636 CKHVAVVCDSSTICHN 651
+ VV + + H+
Sbjct: 913 KALLIVVGNPLLLGHD 928
>ZFIN|ZDB-GENE-060526-371 [details] [associations]
symbol:mov10b.2 "Moloney leukemia virus 10,
homolog, b.2" species:7955 "Danio rerio" [GO:0000932 "cytoplasmic
mRNA processing body" evidence=ISS] [GO:0035279 "mRNA cleavage
involved in gene silencing by miRNA" evidence=ISS] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] ZFIN:ZDB-GENE-060526-371
GO:GO:0005524 GO:GO:0003723 GO:GO:0004386 GO:GO:0000932
GO:GO:0035279 eggNOG:COG1112 InterPro:IPR026122
PANTHER:PTHR10887:SF17 GeneTree:ENSGT00550000074391 EMBL:BX323059
HOGENOM:HOG000239755 OrthoDB:EOG4SXNC4 IPI:IPI00611260
RefSeq:NP_001037805.1 UniGene:Dr.94434 ProteinModelPortal:Q1LXK5
Ensembl:ENSDART00000078491 GeneID:555950 KEGG:dre:555950 CTD:555950
InParanoid:Q1LXK5 NextBio:20881245 Uniprot:Q1LXK5
Length = 1015
Score = 131 (51.2 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 38/119 (31%), Positives = 66/119 (55%)
Query: 537 SFYNEGEAEIVVHHVFSLICA----GVS---PSAIAVQSPYVAQVQHLRERLD---DLPE 586
SF+N E I+V ++ L+ G+S P I + +PY QV+ ++ +D D +
Sbjct: 820 SFFNIYEINILVDYLKKLLLTQPKKGISRIFPKDIGIIAPYRKQVEKIKRAIDADKDFQD 879
Query: 587 AAGVE---VATIDSFQGREADAVIISMVRSN----TLGA---VGFLGDSRRMNVAITRA 635
G++ V +++ FQG+E +++S VRS+ +L +GFL + +R NVA+TRA
Sbjct: 880 YMGIDNLKVGSVEEFQGQERKVIMVSTVRSSVKYISLDETFNIGFLKNEKRFNVAVTRA 938
Score = 101 (40.6 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 24/59 (40%), Positives = 33/59 (55%)
Query: 243 IALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ--GERVLVTAPTNAAVDNMVEKL 299
I G +K P L+ GPPGTGKT + E I + + +L AP+N+A D + EKL
Sbjct: 541 IVAGTSKPAPYLVF-GPPGTGKTVTIVEAIKQVEKNIPDAYILACAPSNSAADQLCEKL 598
Score = 81 (33.6 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 26/76 (34%), Positives = 38/76 (50%)
Query: 418 ILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHE----GVL------ATKLTTQYRMN 467
+LAGD QL P++ S A+ G+ VSLLER T ++ G + +KL YR +
Sbjct: 703 VLAGDPKQLGPILRSPLAINHGLDVSLLERLMTQNDLYKRGDVEFDNRYVSKLIMNYRSH 762
Query: 468 DAIASWASKEMYGGSL 483
I ++ Y G L
Sbjct: 763 PYILEVPNRLFYDGEL 778
>MGI|MGI:1891384 [details] [associations]
symbol:Mov10l1 "Moloney leukemia virus 10-like 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007517 "muscle organ development" evidence=IDA]
[GO:0008283 "cell proliferation" evidence=IDA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0045786 "negative regulation
of cell cycle" evidence=IDA] MGI:MGI:1891384 GO:GO:0005524
GO:GO:0005737 GO:GO:0008283 GO:GO:0007283 GO:GO:0007517
GO:GO:0004386 eggNOG:COG1112 GO:GO:0045786 CTD:54456
HOVERGEN:HBG052382 KO:K13983 InterPro:IPR026125
PANTHER:PTHR10887:SF6 EMBL:AF285587 EMBL:AF340211 EMBL:AY303754
EMBL:AK084786 IPI:IPI00118099 IPI:IPI00227971 IPI:IPI00453884
RefSeq:NP_112550.2 UniGene:Mm.358791 ProteinModelPortal:Q99MV5
SMR:Q99MV5 STRING:Q99MV5 PhosphoSite:Q99MV5 PaxDb:Q99MV5
PRIDE:Q99MV5 DNASU:83456 GeneID:83456 KEGG:mmu:83456
HOGENOM:HOG000015363 InParanoid:Q99MV5 NextBio:350584
CleanEx:MM_MOV10L1 Genevestigator:Q99MV5
GermOnline:ENSMUSG00000015365 Uniprot:Q99MV5
Length = 1187
Score = 171 (65.3 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 77/252 (30%), Positives = 118/252 (46%)
Query: 411 DLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLER---------------AATLHEGV 455
D+ G+ +LAGD QL PVI SR A+ G+ VS+LER A + +
Sbjct: 907 DINGQ-IVLAGDPMQLGPVIKSRLAMAYGLNVSMLERLMSRPAYLRDENAFGACGAYNPL 965
Query: 456 LATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDT 515
L TKL YR + A+ + S+ Y L + D P +T LL
Sbjct: 966 LVTKLVKNYRSHSALLALPSRLFYHREL--------EVCAD-----PKVVTS---LLGWE 1009
Query: 516 RLPYGSLSL---GCEEHLDLAGTG-SFYNEGEAEIVVHHVFSL---ICAGVSPSAIAVQS 568
+LP L G + G S+++ EA V+ + L + + VS I V +
Sbjct: 1010 KLPRKGFPLIFHGVRGNEAREGRSPSWFSPAEAVQVMRYCCLLARSVSSQVSSKDIGVIT 1069
Query: 569 PYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNT------LGAVGFL 622
PY QV+ ++ L ++ + ++V +++ FQG+E ++IS VRSN +GFL
Sbjct: 1070 PYRKQVEKIKILLRNV-DLTDIKVGSVEEFQGQEYLVIVISTVRSNEDRFEDDRYFLGFL 1128
Query: 623 GDSRRMNVAITR 634
+S+R NVAITR
Sbjct: 1129 SNSKRFNVAITR 1140
Score = 93 (37.8 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 236 DDSQKKAIALGLNKK-RPL-LIIQGPPGTGKTGLLKEIIARA--VQQGERVLVTAPTNAA 291
+++QK A+ L+ RPL I+ GPPGTGKT + E + + R+LV AP+N+A
Sbjct: 748 NENQKLAVRRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHYALPDSRILVCAPSNSA 807
Query: 292 VDNMVEKLSD 301
D + +L +
Sbjct: 808 ADLVCLRLHE 817
Score = 48 (22.0 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 299 LSDVGLNIVRVGNPARISPAVASK 322
+SD+ IV G+P ++ P + S+
Sbjct: 905 ISDINGQIVLAGDPMQLGPVIKSR 928
>UNIPROTKB|Q9HCE1 [details] [associations]
symbol:MOV10 "Putative helicase MOV-10" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0035279 "mRNA cleavage involved in gene silencing
by miRNA" evidence=IDA] [GO:0005829 "cytosol" evidence=TAS]
[GO:0007219 "Notch signaling pathway" evidence=TAS] GO:GO:0005829
GO:GO:0005524 Reactome:REACT_111102 Reactome:REACT_116125
Reactome:REACT_6900 GO:GO:0006355 GO:GO:0007219 GO:GO:0006351
GO:GO:0003723 GO:GO:0004386 GO:GO:0000932 GO:GO:0035279
eggNOG:COG1112 InterPro:IPR026122 PANTHER:PTHR10887:SF17
EMBL:AL603832 HOGENOM:HOG000239755 OrthoDB:EOG4SXNC4 CTD:4343
OMA:VRFFKLD EMBL:AB046851 EMBL:AK074174 EMBL:AL833353 EMBL:BC002548
EMBL:BC004499 EMBL:BC009312 IPI:IPI00444452 IPI:IPI00444454
IPI:IPI00929442 RefSeq:NP_001123551.1 RefSeq:NP_066014.1
UniGene:Hs.514941 ProteinModelPortal:Q9HCE1 SMR:Q9HCE1
DIP:DIP-44158N IntAct:Q9HCE1 STRING:Q9HCE1 PhosphoSite:Q9HCE1
DMDM:24638063 PaxDb:Q9HCE1 PRIDE:Q9HCE1 DNASU:4343
Ensembl:ENST00000357443 Ensembl:ENST00000369645
Ensembl:ENST00000413052 Ensembl:ENST00000544796 GeneID:4343
KEGG:hsa:4343 UCSC:uc001eck.3 GeneCards:GC01P113215 HGNC:HGNC:7200
MIM:610742 neXtProt:NX_Q9HCE1 PharmGKB:PA30908 HOVERGEN:HBG052500
InParanoid:Q9HCE1 PhylomeDB:Q9HCE1 ChiTaRS:MOV10 GenomeRNAi:4343
NextBio:17098 ArrayExpress:Q9HCE1 Bgee:Q9HCE1 CleanEx:HS_MOV10
Genevestigator:Q9HCE1 GermOnline:ENSG00000155363 Uniprot:Q9HCE1
Length = 1003
Score = 130 (50.8 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 42/136 (30%), Positives = 71/136 (52%)
Query: 537 SFYNEGEAEIVVHHVFSLIC-------AGVSPSAIAVQSPYVAQVQHLR---ERLD---- 582
SF+N EA V ++ L+ A +SP ++ V SPY QV+ +R +LD
Sbjct: 793 SFFNPEEAATVTSYLKLLLAPSSKKGKARLSPRSVGVISPYRKQVEKIRYCITKLDRELR 852
Query: 583 DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGA-------VGFLGDSRRMNVAITRA 635
L + ++V +++ FQG+E ++IS VRS+ +GFL + +R NVA+TRA
Sbjct: 853 GLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRA 912
Query: 636 CKHVAVVCDSSTICHN 651
+ +V + + H+
Sbjct: 913 KALLIIVGNPLLLGHD 928
Score = 95 (38.5 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 243 IALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGER--VLVTAPTNAAVDNMVEKLS 300
I G + P +I GPPGTGKT L E I + V+ + +L AP+N+ D + ++L
Sbjct: 510 IVTGTTRPAPYIIF-GPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQRLR 568
Query: 301 -DVGLNIVRVGNPAR 314
+ +I R+ P+R
Sbjct: 569 VHLPSSIYRLLAPSR 583
Score = 86 (35.3 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 29/86 (33%), Positives = 41/86 (47%)
Query: 414 GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH-------EGV---LATKLTTQ 463
G + +LAGD QL PV+ S + G+G SLLER T + +G TKL
Sbjct: 672 GGQLVLAGDPRQLGPVLRSPLTQKHGLGYSLLERLLTYNSLYKKGPDGYDPQFITKLLRN 731
Query: 464 YRMNDAIASWASKEMYGGSLISSSTV 489
YR + I ++ Y G L + + V
Sbjct: 732 YRSHPTILDIPNQLYYEGELQACADV 757
Score = 42 (19.8 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 296 VEKLSDVGLNIVRVGNPARISPAVAS 321
V++ D G +V G+P ++ P + S
Sbjct: 665 VKETGDPGGQLVLAGDPRQLGPVLRS 690
>UNIPROTKB|Q9P2E3 [details] [associations]
symbol:ZNFX1 "NFX1-type zinc finger-containing protein 1"
species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] Pathway_Interaction_DB:telomerasepathway
GO:GO:0046872 eggNOG:COG1112 EMBL:AL049766 EMBL:AB037825
EMBL:AK000573 EMBL:AK002139 EMBL:AK022641 EMBL:AK023836
IPI:IPI00165981 IPI:IPI00220462 RefSeq:NP_066363.1
UniGene:Hs.371794 ProteinModelPortal:Q9P2E3 SMR:Q9P2E3
IntAct:Q9P2E3 STRING:Q9P2E3 PhosphoSite:Q9P2E3 DMDM:23821814
PaxDb:Q9P2E3 PeptideAtlas:Q9P2E3 PRIDE:Q9P2E3
Ensembl:ENST00000371752 Ensembl:ENST00000396105 GeneID:57169
KEGG:hsa:57169 UCSC:uc002xui.3 CTD:57169 GeneCards:GC20M047854
HGNC:HGNC:29271 HPA:HPA046629 neXtProt:NX_Q9P2E3
PharmGKB:PA143485687 HOVERGEN:HBG052201 InParanoid:Q9P2E3
OMA:CVRLCSE PhylomeDB:Q9P2E3 ChiTaRS:ZNFX1 GenomeRNAi:57169
NextBio:63185 ArrayExpress:Q9P2E3 Bgee:Q9P2E3 CleanEx:HS_ZNFX1
Genevestigator:Q9P2E3 GermOnline:ENSG00000124201 Uniprot:Q9P2E3
Length = 1918
Score = 166 (63.5 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 42/126 (33%), Positives = 66/126 (52%)
Query: 537 SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATID 596
S N+ EA VV +C PS I + + Y Q+ LR +L AGV V +D
Sbjct: 1127 SHQNQHEAHFVVELCKYFLCQEYLPSQITILTTYTGQLFCLR-KLMPAKTFAGVRVHVVD 1185
Query: 597 SFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLAR 656
+QG E D +++S+VRSN G VGFL S R+ VA++RA K + + + + ++
Sbjct: 1186 KYQGEENDIILLSLVRSNQEGKVGFLQISNRICVALSRAKKGMYCIGNMQMLAKVPLWSK 1245
Query: 657 LLRHIR 662
++ +R
Sbjct: 1246 IIHTLR 1251
Score = 104 (41.7 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 35/85 (41%), Positives = 45/85 (52%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKT--GL-------LKEIIARAVQQGERVLVTA 286
DDSQ +A+ L R L IIQGPPGTGKT GL E + + Q +LV
Sbjct: 599 DDSQMEALQFALT--RELAIIQGPPGTGKTYVGLKIVQALLTNESVWQISLQKFPILVVC 656
Query: 287 PTNAAVDNMVEKLSDVG-LNIVRVG 310
TN A+D +E + + +IVRVG
Sbjct: 657 YTNHALDQFLEGIYNCQKTSIVRVG 681
Score = 37 (18.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVA 320
++ E+L V + VR+ R+ P +A
Sbjct: 1054 SLFERLVKVNIPFVRLNYQHRMCPEIA 1080
>ZFIN|ZDB-GENE-070912-617 [details] [associations]
symbol:si:dkey-97a13.6 "si:dkey-97a13.6"
species:7955 "Danio rerio" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001900 InterPro:IPR003593 InterPro:IPR026855
Pfam:PF00773 SMART:SM00382 SMART:SM00955 ZFIN:ZDB-GENE-070912-617
GO:GO:0005524 GO:GO:0003723 GO:GO:0004386 GO:GO:0004540
PANTHER:PTHR10887:SF16 GeneTree:ENSGT00550000074391 EMBL:BX663525
IPI:IPI00499390 RefSeq:XP_699251.2 UniGene:Dr.89869
Ensembl:ENSDART00000017829 GeneID:570654 KEGG:dre:570654
NextBio:20890238 Uniprot:E7F3B1
Length = 2781
Score = 193 (73.0 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 80/271 (29%), Positives = 120/271 (44%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
++ +L GD QL P++ + G+ SL ER + ++ L TQYRM++ I +
Sbjct: 2516 EKVVLLGDHKQLRPIVKNNHVRRLGMTRSLFERY--MDRAIM---LDTQYRMHEEICKFP 2570
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAG 534
S+ Y L + V V + ++ +L D R G +G
Sbjct: 2571 SEAYYNDML--KTVVRERTSVLNAETEGRRQSK-RILFGDIR---GE-EIGLVVSTARGN 2623
Query: 535 TGSFYNEGEAEIVVHHVFSLICAG-VSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVA 593
S N E + V L+ G V P IA+ SPY AQV +RERL D E G V
Sbjct: 2624 ENSKANFDEVKKAVEICIQLVTVGRVRPEDIAILSPYNAQVAQIRERLSDF-ELKGFTVT 2682
Query: 594 TIDSFQGREADAVIISMVRS------------NTLGA-VGFLGDSRRMNVAITRACKHVA 640
TI QG E VI+S+VRS L +GF+GD ++NV ITRA +
Sbjct: 2683 TITKSQGSEWQYVILSIVRSCPSDEIEPMPSREWLSKHIGFVGDENQINVGITRAQVGLC 2742
Query: 641 VVCDSSTICHNTFLARLLRHIRYFGRVKHAE 671
++ + + + + +LL+H G V A+
Sbjct: 2743 ILGNQAVLNCSPAWQKLLKHYSGHGCVVTAD 2773
Score = 78 (32.5 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKT 265
++SQ KA+ LN K IIQGPPGTGKT
Sbjct: 2291 NESQFKALEKALNGK--FTIIQGPPGTGKT 2318
Score = 75 (31.5 bits), Expect = 8.9e-13, Sum P(3) = 8.9e-13
Identities = 40/135 (29%), Positives = 60/135 (44%)
Query: 174 LTYERNCEALMLLQKNGL-----HK---RNPSIAAVVTLFGDK-EDVTWLEENDLADWSE 224
L E CE + Q N L H+ R P + V+ F + V +++ L + +
Sbjct: 477 LRKETTCEMEVQFQLNRLSFCQIHQAIDRLPDLHNVLPDFSNCCVPVNLTKQSQLNNKQQ 536
Query: 225 VKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVL 283
+ L+ I+GK DD K A PLLI GP GTGKT L + + +VL
Sbjct: 537 IALNFILGKCEDD---KVAA-------PLLIY-GPFGTGKTLCLASAAKELAHRSQNKVL 585
Query: 284 VTAPTNAAVDNMVEK 298
+ TN++ D V +
Sbjct: 586 ICTYTNSSADLYVRE 600
Score = 48 (22.0 bits), Expect = 8.9e-13, Sum P(3) = 8.9e-13
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 416 RCILAGDQCQLAPVILS 432
R +LAGD Q+AP + S
Sbjct: 709 RVVLAGDHMQMAPKLFS 725
Score = 45 (20.9 bits), Expect = 8.0e-10, Sum P(2) = 8.0e-10
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG 279
D+ QK+ I K+ L +++ P K G E++ Q G
Sbjct: 1020 DNEQKRRIFTSAEKENLLEMVRNQPALYKRG---ELVMEGYQSG 1060
>UNIPROTKB|Q886X0 [details] [associations]
symbol:PSPTO_1455 "Uncharacterized protein" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:AE016853 GenomeReviews:AE016853_GR eggNOG:COG1112
InterPro:IPR024402 Pfam:PF10881 RefSeq:NP_791281.1
ProteinModelPortal:Q886X0 GeneID:1183092 KEGG:pst:PSPTO_1455
PATRIC:19994154 HOGENOM:HOG000273296 OMA:HYRCHPK
ProtClustDB:CLSK879830 BioCyc:PSYR223283:GJIX-1482-MONOMER
Uniprot:Q886X0
Length = 758
Score = 150 (57.9 bits), Expect = 4.4e-13, Sum P(3) = 4.4e-13
Identities = 36/91 (39%), Positives = 53/91 (58%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNM 295
++SQ KA+ + + + +I+GPPGTGKT + IIA + QG+ V V + NAAV N+
Sbjct: 31 NESQLKAVEQAFSSQ--ISLIEGPPGTGKTQTILNIIANILLQGKTVAVVSNNNAAVKNV 88
Query: 296 VEKLSDVGLN--IVRVGNPARISPAVASKSL 324
EKL GL+ + R+GN A +SL
Sbjct: 89 YEKLGKCGLDYLVARLGNKENRETFFAERSL 119
Score = 106 (42.4 bits), Expect = 4.4e-13, Sum P(3) = 4.4e-13
Identities = 24/79 (30%), Positives = 41/79 (51%)
Query: 594 TIDSFQGREADAVIISMV--RSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI-CH 650
T+ FQGRE D ++ S V + + + F+ D+R +NVA++RA +V
Sbjct: 509 TVHKFQGRECDEIVFSTVLDKHKSPERLSFVDDARMVNVAVSRAKNRFTLVTGDGVFKAG 568
Query: 651 NTFLARLLRHIRYFGRVKH 669
N +A L+R++ Y+ H
Sbjct: 569 NGHIAALIRYMEYYAEDGH 587
Score = 46 (21.3 bits), Expect = 4.4e-13, Sum P(3) = 4.4e-13
Identities = 20/77 (25%), Positives = 33/77 (42%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIG------VSLLERAATLH-EGVLATKLTTQYRMN 467
K I+ GD+ QLA I + LE SLL+ + + + T L YR +
Sbjct: 357 KNLIIVGDRKQLAH-IPEKLGLEAPAPWYDCETYSLLDSCVGVFGDSIPMTLLKEHYRCH 415
Query: 468 DAIASWASKEMYGGSLI 484
I + +++ Y L+
Sbjct: 416 PRIIQFCNQQFYDNQLV 432
>UNIPROTKB|G5EA02 [details] [associations]
symbol:C4orf21 "Uncharacterized protein C4orf21"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR010666 Pfam:PF06839 GO:GO:0008270
EMBL:CH471057 InterPro:IPR018838 Pfam:PF10382 UniGene:Hs.713663
RefSeq:NP_060862.3 UniGene:Hs.380346 GeneID:55345 KEGG:hsa:55345
CTD:55345 GenomeRNAi:55345 NextBio:59679 EMBL:AC106864
EMBL:AC023886 PRIDE:G5EA02 Ensembl:ENST00000505019 HGNC:HGNC:25654
OMA:NTYESSG ArrayExpress:G5EA02 Bgee:G5EA02 Uniprot:G5EA02
Length = 2104
Score = 192 (72.6 bits), Expect = 4.6e-13, Sum P(3) = 4.6e-13
Identities = 45/128 (35%), Positives = 76/128 (59%)
Query: 537 SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQ---HLRERLD-DLPEAAGVEV 592
SF+N EA + + SLI +G++ S I V + Y +Q+ HL +D P+ V+V
Sbjct: 1931 SFHNVAEATFTLKLIQSLIASGIAGSMIGVITLYKSQMYKLCHLLSAVDFHHPDIKTVQV 1990
Query: 593 ATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT 652
+T+D+FQG E + +I+S VR+ VGF+ +RMNVA+TR +H+ +V + + + N
Sbjct: 1991 STVDAFQGAEKEIIILSCVRTRQ---VGFIDSEKRMNVALTRGKRHLLIVGNLACLRKNQ 2047
Query: 653 FLARLLRH 660
R+++H
Sbjct: 2048 LWGRVIQH 2055
Score = 135 (52.6 bits), Expect = 4.7e-07, Sum P(3) = 4.7e-07
Identities = 55/208 (26%), Positives = 99/208 (47%)
Query: 415 KRCILAGDQCQLAPVIL-SRKALEGGIGVSLLERAATL-HEGVLATKLTTQYRMNDAIAS 472
++ IL GD QL P I S A E G+ +L +R + H+ +L L TQYR + AI++
Sbjct: 1829 EKLILVGDPKQLPPTIQGSDAAHENGLEQTLFDRLCLMGHKPIL---LRTQYRCHPAISA 1885
Query: 473 WASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDL 532
A+ Y G+L++ T +P ++ W+ L + + G + +
Sbjct: 1886 IANDLFYKGALMNGVTEIER----SPLLE--WLPT--LCFYNVK---GLEQIERDNSFHN 1934
Query: 533 AGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD-DLPEAAGVE 591
+F +++ + S I AG I + + ++ HL +D P+ V+
Sbjct: 1935 VAEATF----TLKLIQSLIASGI-AGSMIGVITLYKSQMYKLCHLLSAVDFHHPDIKTVQ 1989
Query: 592 VATIDSFQGREADAVIISMVRSNTLGAV 619
V+T+D+FQG E + +I+S VR+ +G +
Sbjct: 1990 VSTVDAFQGAEKEIIILSCVRTRQVGFI 2017
Score = 80 (33.2 bits), Expect = 4.6e-13, Sum P(3) = 4.6e-13
Identities = 28/87 (32%), Positives = 44/87 (50%)
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGER-------------VLVTAPTNAAVDNMVEK 298
P+ II G G GK+ LL +I VQ E+ +L+++ TN AVD ++
Sbjct: 1648 PITIIHGVFGAGKSYLLAVVILFFVQLFEKSEAPTIGNARPWKLLISSSTNVAVDRVLLG 1707
Query: 299 LSDVGL-NIVRVGNPARISPAVASKSL 324
L +G N +RVG+ +I+ + SL
Sbjct: 1708 LLSLGFENFIRVGSVRKIAKPILPYSL 1734
Score = 43 (20.2 bits), Expect = 4.6e-13, Sum P(3) = 4.6e-13
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 1 MDLERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVS 60
MD E + +I L TQ E+ + E T+EE ++S+S + LV+
Sbjct: 508 MDNESLNSIHESLSNVTQPFLEVTFNLNNFETSDTEEESQESNKISQDSESWVK-DILVN 566
Query: 61 HGRA 64
G +
Sbjct: 567 DGNS 570
Score = 43 (20.2 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 335 FVAEFERKKSDLRKDLRQCLKDDSL 359
F+ K L KD +Q LK+D +
Sbjct: 872 FITVVSPKSPHLHKDSQQILKEDEV 896
Score = 39 (18.8 bits), Expect = 6.4e-09, Sum P(3) = 6.4e-09
Identities = 13/56 (23%), Positives = 24/56 (42%)
Query: 286 APTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFER 341
A N + ++L +G + + R PA+++ + K L + V E ER
Sbjct: 1850 AHENGLEQTLFDRLCLMGHKPILLRTQYRCHPAISAIANDLFYKGALMNGVTEIER 1905
Score = 38 (18.4 bits), Expect = 1.5e-12, Sum P(3) = 1.5e-12
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 37 EELNAVPTPDENSDSSKP-IEFLVSHGRAPQELCD 70
EE+ P S S KP + F V P + CD
Sbjct: 582 EEIEGEHLPFLTSVSDKPTVTFPVKE-TLPSQFCD 615
>UNIPROTKB|E1BZJ8 [details] [associations]
symbol:MOV10L1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0007281 "germ cell development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
GeneTree:ENSGT00550000074391 OMA:NMSGVTL InterPro:IPR026125
PANTHER:PTHR10887:SF6 EMBL:AADN02050039 EMBL:AADN02050037
EMBL:AADN02050038 IPI:IPI00585215 Ensembl:ENSGALT00000013959
ArrayExpress:E1BZJ8 Uniprot:E1BZJ8
Length = 1192
Score = 222 (83.2 bits), Expect = 5.8e-13, Sum P(2) = 5.8e-13
Identities = 126/480 (26%), Positives = 201/480 (41%)
Query: 214 LEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKK-RPL-LIIQGPPGTGKTGLLKEI 271
+EE + W + + QK A+ L+ + RP I+ GPPGTGKT + E
Sbjct: 734 VEETETIKW---RAGEFFNPMLNKQQKLAVKRILSGECRPTPYILFGPPGTGKTITVVEA 790
Query: 272 IARA--VQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVAS-KSLGEIV 328
I + R+LV AP+NAA D + +L N+++ G R++ S + + +IV
Sbjct: 791 ILQIHFTLPDSRILVCAPSNAATDLICLRLHQS--NLLKPGAMVRVNATCRSTEQIDDIV 848
Query: 329 KSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRXXXXXXXXXXXXXXXXXXXXXXSS 388
K C D + +
Sbjct: 849 KP---------------------YCKDGDDIWKAVWFRIIITTCSSAGMFYQTGTRLGHF 887
Query: 389 AQVVLATNTGAADP--LIRRLDTFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLE 446
V+L A++P LI + V + +L GD QL P+I SR A+ G+ +SLLE
Sbjct: 888 THVILDEAGQASEPESLIP-IGLISEVNGQIVLVGDPKQLGPLIKSRIAVAFGLNISLLE 946
Query: 447 RA-----------ATLHEG----VLATKLTTQYRMNDAIASWASKEMYGGSL--ISSSTV 489
R A +G +L TKL YR + A+ + SK Y L + ++V
Sbjct: 947 RLISRDMYLRDEDAFSADGSYNPLLITKLVNNYRSHSALLALPSKLFYHKELEVCADTSV 1006
Query: 490 ASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVH 549
S LL + + PL+ R G + E H + S++N EA V+
Sbjct: 1007 VSSLLHWEKLPRKGF----PLIFHGVR---GKETR--EGH-----SPSWFNPTEAVQVMQ 1052
Query: 550 HVFSLI---CAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAV 606
+ L VS + I V +PY QV+ ++ L + + + ++V T++ FQG+E
Sbjct: 1053 YCCHLAKNESIAVSVTDIGVITPYRKQVEKIKFLLRSI-DLSDIKVGTVEEFQGQECMVT 1111
Query: 607 IISMVRS--NTLG----AVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRH 660
I+S VRS +T +GFL + +R NVAITRA + V+ + + + LL +
Sbjct: 1112 ILSTVRSYEDTFAEEEYCLGFLSNPKRFNVAITRAKALLIVIGNPHLLVKDPCFCALLEY 1171
Score = 37 (18.1 bits), Expect = 5.8e-13, Sum P(2) = 5.8e-13
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 33 EFTQEELNAVPTPD-ENSDSSKPIEFLVSHGRAPQELC 69
E E++ D E + +S+P++ H R P C
Sbjct: 542 EICNEDVTLKCNADFERAYNSEPMDVEFVHCRIPSRRC 579
>UNIPROTKB|F1RMM8 [details] [associations]
symbol:LOC100519780 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0045944 "positive regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001900 InterPro:IPR003593
InterPro:IPR026855 Pfam:PF00773 PROSITE:PS50103 SMART:SM00382
SMART:SM00955 GO:GO:0005524 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0004540 InterPro:IPR022966 PROSITE:PS01175
OMA:FRAAHIM PANTHER:PTHR10887:SF16 GeneTree:ENSGT00550000074391
EMBL:FP102633 Ensembl:ENSSSCT00000003670 Uniprot:F1RMM8
Length = 2879
Score = 193 (73.0 bits), Expect = 3.2e-12, Sum P(3) = 3.2e-12
Identities = 82/268 (30%), Positives = 129/268 (48%)
Query: 392 VLATNTG-AADP-LIRRLDTFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAA 449
+L G A++P + L +F V K +L GD QL PV+ S + G+ SLL+R
Sbjct: 2589 ILVDEAGLASEPETLIPLVSFSQVEK-VVLLGDHKQLRPVVKSEQLQNLGLDRSLLQRYR 2647
Query: 450 TLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCP 509
A+ L QY ++++I ++ S E Y L T L P + C
Sbjct: 2648 RD-----ASMLDLQYCVHESICAFPSMEFYKKKL---KTWQGLRL--PPSILGYGKENCS 2697
Query: 510 LLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSP 569
++ D + P SL + EE + S N+ +A +VV L+ V P +A+ +P
Sbjct: 2698 VIFGDVQSPEESLVVSTEEGRE----NSKVNKEQAALVVCLAKQLVSGRVDPKDMAILTP 2753
Query: 570 YVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRS---NTLG--------- 617
Y AQV + +RL++ AGV V +I QGR+ V++S VR+ + L
Sbjct: 2754 YHAQVLEISKRLEEA-RVAGVTVCSITKSQGRQWRYVLVSTVRTCQESDLDLRPTKSWLQ 2812
Query: 618 -AVGFLGDSRRMNVAITRACKHVAVVCD 644
++GFL D ++NVA+TRA + + VV D
Sbjct: 2813 KSLGFLVDPNQVNVALTRAQEGLWVVGD 2840
Score = 73 (30.8 bits), Expect = 3.2e-12, Sum P(3) = 3.2e-12
Identities = 22/75 (29%), Positives = 31/75 (41%)
Query: 213 WLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEII 272
W + D + G + K + SQ A+ L K+ +I GPPGTGKT + I
Sbjct: 2364 WWSPSRFLDQQAFDMPGGLHK-LNPSQNTAVREALKKQ--FTVIHGPPGTGKTVVGLHIA 2420
Query: 273 ARAVQQGERVLVTAP 287
Q E+ P
Sbjct: 2421 YWLCQSNEQAAARGP 2435
Score = 73 (30.8 bits), Expect = 6.4e-12, Sum P(3) = 6.4e-12
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVDNMV 296
PLL+ GP GTGKT L ++Q G +VL+ TN+ D+ +
Sbjct: 783 PLLVC-GPFGTGKTYALAMASLEVIRQPGTKVLICTHTNSTADSYI 827
Score = 45 (20.9 bits), Expect = 3.2e-12, Sum P(3) = 3.2e-12
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 104 TLSPGDMVCVRVCDSRGACATSCI 127
T++PG +C+ + G C + C+
Sbjct: 2091 TVAPGFCLCLEHVERPGDCFSRCV 2114
Score = 43 (20.2 bits), Expect = 5.1e-12, Sum P(3) = 5.1e-12
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 135 GEDGCTISVALESRHGDPTFSKLFGKSV-RIDR 166
G D TIS+ L + D S F SV R DR
Sbjct: 1607 GRDRLTISLFLTEKGSDQLKSLRFAPSVIRSDR 1639
Score = 42 (19.8 bits), Expect = 6.4e-12, Sum P(3) = 6.4e-12
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 303 GLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKS 344
G +V G+ R++P + S + G I L + + R+++
Sbjct: 931 GTRVVLAGDHMRVAPRLFSAAAGRIAGPTLLHRLLQHFREQA 972
Score = 38 (18.4 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 190 GLHKRNPS 197
GLHK NPS
Sbjct: 2381 GLHKLNPS 2388
>FB|FBgn0034187 [details] [associations]
symbol:CG6967 species:7227 "Drosophila melanogaster"
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=ISS] UCSC:CG6967-RC
FlyBase:FBgn0034187 NextBio:801049 EMBL:AY119610
ProteinModelPortal:Q8MRI1 PRIDE:Q8MRI1 InParanoid:Q8MRI1
PhylomeDB:Q8MRI1 ArrayExpress:Q8MRI1 Bgee:Q8MRI1 Uniprot:Q8MRI1
Length = 825
Score = 152 (58.6 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 68/246 (27%), Positives = 115/246 (46%)
Query: 418 ILAGDQCQLAPVILSRKALEGGIGVSLLERAATL----------HEGVLATKLTTQYRMN 467
IL+GD QL VI S +A G+ SL+ER ++ +L YR +
Sbjct: 503 ILSGDHKQLGAVIKSNRAASLGLSRSLMERLLQSDCYKSDENGNYDRNRQMRLCRNYRSH 562
Query: 468 DAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE 527
I ++ Y G L + + L V Q P++ T +G + E
Sbjct: 563 PQIVRLFNELYYNGELKAQAPAMDVNLAANWSVLTN--PQFPIIFQAT---HGVTNR--E 615
Query: 528 EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGV-SPSAIAVQSPYVAQVQHLRERLDDLPE 586
++ T S YN EAE++ +V LI V + + +PY AQ + + + L
Sbjct: 616 QN----STSS-YNNLEAEVICWYVKRLINDRVVGQEDVGIVAPYTAQGKLVTKLLQS-KG 669
Query: 587 AAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSS 646
VEV +++++QGRE +I S+V+S T +GF+ + RR+NV ++RA + +V +
Sbjct: 670 YPNVEVGSVETYQGREKTIIIASLVKSFT--NMGFMCNPRRVNVLLSRAKALLILVGNPV 727
Query: 647 TICHNT 652
T+ H++
Sbjct: 728 TLRHHS 733
Score = 98 (39.6 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 25/61 (40%), Positives = 38/61 (62%)
Query: 243 IALGLNKKRPLLIIQGPPGTGKTGLLKEIIARA-VQQGE-RVLVTAPTNAAVDNMVEKLS 300
I G + + P ++ GPPGTGKT + E I + +QQ + R+LVTA +N+A D + KL
Sbjct: 322 IVAGPSTQGPYILF-GPPGTGKTTTIVEAILQLRLQQPQSRILVTAGSNSACDTIALKLC 380
Query: 301 D 301
+
Sbjct: 381 E 381
>UNIPROTKB|Q0V8H6 [details] [associations]
symbol:MOV10 "Putative helicase MOV-10" species:9913 "Bos
taurus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISS] [GO:0035279 "mRNA cleavage involved in gene silencing
by miRNA" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] GO:GO:0005524 GO:GO:0003723 GO:GO:0004386
GO:GO:0000932 GO:GO:0035279 eggNOG:COG1112 InterPro:IPR026122
PANTHER:PTHR10887:SF17 GeneTree:ENSGT00550000074391
HOGENOM:HOG000239755 OrthoDB:EOG4SXNC4 EMBL:BT026242 EMBL:BC148151
IPI:IPI00691419 RefSeq:NP_001069307.1 UniGene:Bt.2939
ProteinModelPortal:Q0V8H6 STRING:Q0V8H6 Ensembl:ENSBTAT00000018997
GeneID:523206 KEGG:bta:523206 CTD:4343 InParanoid:Q0V8H6
OMA:VRFFKLD NextBio:20873687 Uniprot:Q0V8H6
Length = 1003
Score = 148 (57.2 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 64/228 (28%), Positives = 104/228 (45%)
Query: 411 DLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH-------EGV---LATKL 460
D G + +LAGD QL PV+ + G+G SLLER T + +G TKL
Sbjct: 669 DNPGGQLVLAGDPRQLGPVLRCPLTQKHGLGYSLLERLLTFNALYKKGPDGYNPQFITKL 728
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
YR + I ++ Y G L + + V F + W L D + +
Sbjct: 729 LRNYRSHPTILDVPNRLYYDGELQACADVVDR----ERFCR--WEG---LPRQDFPIIFH 779
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC-------AGVSPSAIAVQSPYVAQ 573
+ +G +E + SF+N EA V ++ L+ A +SP ++ V SPY Q
Sbjct: 780 GV-MGKDERE--GNSPSFFNPEEAATVTSYLKQLLAPSSKKGKARLSPRSVGVISPYRKQ 836
Query: 574 VQHLR-------ERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSN 614
V+ +R ++L L + ++V +++ FQG+E ++IS VRS+
Sbjct: 837 VEKIRYCITKLDKQLRGLDDIKDLKVGSVEEFQGQERSVILISTVRSS 884
Score = 122 (48.0 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 36/109 (33%), Positives = 60/109 (55%)
Query: 557 AGVSPSAIAVQSPYVAQVQHLR---ERLDD----LPEAAGVEVATIDSFQGREADAVIIS 609
A +SP ++ V SPY QV+ +R +LD L + ++V +++ FQG+E ++IS
Sbjct: 820 ARLSPRSVGVISPYRKQVEKIRYCITKLDKQLRGLDDIKDLKVGSVEEFQGQERSVILIS 879
Query: 610 MVRSNTLGA-------VGFLGDSRRMNVAITRACKHVAVVCDSSTICHN 651
VRS+ +GFL + +R NVA+TRA + VV + + H+
Sbjct: 880 TVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHD 928
Score = 104 (41.7 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 51/182 (28%), Positives = 80/182 (43%)
Query: 146 ESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAA--VVT 203
E+ H DP K F V +DR++ T R + L + N R P +
Sbjct: 404 ETHHEDPVTYKGFVHKVELDRVKLSFSTSLLSRFVDGLTF-KVNFTFNRQPLRVQHRALE 462
Query: 204 LFG--DKEDVTWLEENDLADW--SEVKL---DGIMGKTFDDSQK-KAIALGLNKKRPLLI 255
L G E + + + S+VKL D + + Q K I +G + P +I
Sbjct: 463 LTGRWPLEPMLFPVASRGVPLLPSDVKLKLYDRSLESNPEQLQAMKHIVMGTTRPAPYII 522
Query: 256 IQGPPGTGKTGLLKEIIARAVQQGER--VLVTAPTNAAVDNMVEKLS-DVGLNIVRVGNP 312
GPPGTGKT L E I + V+ + +L AP+N+ D + ++L + +I R+ P
Sbjct: 523 F-GPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVHLPSSIYRLLAP 581
Query: 313 AR 314
+R
Sbjct: 582 SR 583
>UNIPROTKB|E1C0Z0 [details] [associations]
symbol:HELZ2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0004540 "ribonuclease
activity" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001900 InterPro:IPR007087 InterPro:IPR015880
InterPro:IPR026855 Pfam:PF00773 PROSITE:PS00028 SMART:SM00355
SMART:SM00955 GO:GO:0008270 GO:GO:0003723 GO:GO:0005622
GO:GO:0004386 GO:GO:0004540 OMA:FRAAHIM PANTHER:PTHR10887:SF16
GeneTree:ENSGT00550000074391 EMBL:AADN02019144 IPI:IPI00594758
Ensembl:ENSGALT00000009906 Uniprot:E1C0Z0
Length = 2565
Score = 184 (69.8 bits), Expect = 6.2e-12, Sum P(3) = 6.2e-12
Identities = 81/261 (31%), Positives = 113/261 (43%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
++ +L GD QL PV+ + G+ SL ER A L TQYRM+ I +
Sbjct: 2297 EKVVLLGDHKQLKPVVNNDFCKSLGMETSLFERYQKQ-----AWMLDTQYRMHKNICEFP 2351
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAG 534
S+E Y L T L + + CP++ SL + EE
Sbjct: 2352 SQEFYEHRL---KTCPQLLRIPSVLYHKN-NRCCPIIFGHVEGKEQSLVISTEE----GN 2403
Query: 535 TGSFYNEGEAEIVVHHVFSLICAG-VSPSAIAVQSPYVAQVQHLRERLDDLPEAA-GVEV 592
S N E E V L G + P +IA+ SPY AQV + +RL L E GV V
Sbjct: 2404 ENSKANPEEVEQAVRTAKQLTLDGTIRPQSIAILSPYNAQVSEINKRL--LKEGIRGVTV 2461
Query: 593 ATIDSFQGREADAVIISMVRSNTLGAV-------------GFLGDSRRMNVAITRACKHV 639
TI QG E VI+S VRS + + GF+ D ++NVAITRA + +
Sbjct: 2462 CTIMKSQGSEWRYVILSTVRSCSRHEIDKKPTKSWQKKHLGFVTDPNQVNVAITRAQEGL 2521
Query: 640 AVVCDSSTICHNTFLARLLRH 660
++ + + N RLL+H
Sbjct: 2522 CIIGNRYLLECNPLWRRLLQH 2542
Score = 80 (33.2 bits), Expect = 6.2e-12, Sum P(3) = 6.2e-12
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKT 265
+ + SQ KA+ L K P +IQGPPGTGKT
Sbjct: 2066 RKLNPSQNKAVLNALTK--PFTLIQGPPGTGKT 2096
Score = 77 (32.2 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVD 293
P L+I GP GTGKT L ++Q RVL+ TN+A D
Sbjct: 535 PPLLIYGPFGTGKTFTLAMATLEVIRQPNTRVLICTHTNSAAD 577
Score = 43 (20.2 bits), Expect = 6.2e-12, Sum P(3) = 6.2e-12
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 94 VEGNHRLPPTTLSPGDMVCVR--VCDSRGAC 122
V+ HR PP LS + C R VC+ +C
Sbjct: 72 VQWMHRAPPLGLSTFKL-CSRAEVCEMGDSC 101
>UNIPROTKB|F8VR31 [details] [associations]
symbol:DNA2 "DNA replication ATP-dependent
helicase/nuclease DNA2" species:9606 "Homo sapiens" [GO:0017108
"5'-flap endonuclease activity" evidence=IEA] [GO:0033567 "DNA
replication, Okazaki fragment processing" evidence=IEA] [GO:0043142
"single-stranded DNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR026851 InterPro:IPR014808 Pfam:PF08696 GO:GO:0017108
GO:GO:0043142 GO:GO:0033567 PANTHER:PTHR10887:SF14 EMBL:AL136233
HGNC:HGNC:2939 IPI:IPI01022599 ProteinModelPortal:F8VR31
Ensembl:ENST00000551118 UCSC:uc001jog.2 ArrayExpress:F8VR31
Bgee:F8VR31 Uniprot:F8VR31
Length = 807
Score = 196 (74.1 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 54/130 (41%), Positives = 75/130 (57%)
Query: 536 GSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG-VEVAT 594
G N EA+++V + AG SPS I + +PY Q++ + D L + G VEV T
Sbjct: 671 GGVSNVTEAKLIVFLTSIFVKAGCSPSDIGIIAPYRQQLKIIN---DLLARSIGMVEVNT 727
Query: 595 IDSFQGREADAVIISMVRSNTLGAVG-FLGDSRRMNVAITRACKHVAVV--CDSSTICHN 651
+D +QGR+ V++S VRSN G VG L D RR+NVAITRA KH ++ C S C+
Sbjct: 728 VDKYQGRDKSIVLVSFVRSNKDGTVGELLKDWRRLNVAITRA-KHKLILLGCVPSLNCYP 786
Query: 652 TFLARLLRHI 661
L +LL H+
Sbjct: 787 P-LEKLLNHL 795
>MGI|MGI:97054 [details] [associations]
symbol:Mov10 "Moloney leukemia virus 10" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0031047 "gene silencing by RNA"
evidence=IEA] [GO:0035279 "mRNA cleavage involved in gene silencing
by miRNA" evidence=ISO] InterPro:IPR003593 SMART:SM00382
MGI:MGI:97054 GO:GO:0005524 GO:GO:0003723 GO:GO:0004386
GO:GO:0000932 GO:GO:0035279 eggNOG:COG1112 InterPro:IPR026122
PANTHER:PTHR10887:SF17 GeneTree:ENSGT00550000074391 CTD:4343
HOVERGEN:HBG052500 EMBL:X52574 EMBL:AK004542 EMBL:BC053743
EMBL:X75819 IPI:IPI00130328 PIR:A39611 RefSeq:NP_001156912.1
RefSeq:NP_001156913.1 RefSeq:NP_032645.2 UniGene:Mm.1597
ProteinModelPortal:P23249 SMR:P23249 DIP:DIP-48575N STRING:P23249
PhosphoSite:P23249 PaxDb:P23249 PRIDE:P23249
Ensembl:ENSMUST00000168015 GeneID:17454 KEGG:mmu:17454
NextBio:292100 Bgee:P23249 Genevestigator:P23249
GermOnline:ENSMUSG00000002227 Uniprot:P23249
Length = 1004
Score = 151 (58.2 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 65/227 (28%), Positives = 104/227 (45%)
Query: 414 GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL----------HEGVLATKLTTQ 463
G + +LAGD QL PV+ S AL+ G+G SLLER ++ TKL
Sbjct: 673 GGQLVLAGDPRQLGPVLRSPLALKHGLGYSLLERLLAYNSLYKKGPNGYDPQFITKLLRN 732
Query: 464 YRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQ--CPLLLLDTRLPYGS 521
YR + I ++ Y G L + + V F + + Q P++ +G
Sbjct: 733 YRSHPTILDIPNQLYYDGELQACADVVDR----ERFCRWEGLPQQGFPIIF------HGV 782
Query: 522 LSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC-------AGVSPSAIAVQSPYVAQV 574
+ G +E + SF+N EA V ++ L+ A +SP + V SPY QV
Sbjct: 783 M--GKDERE--GNSPSFFNPEEAATVTSYLKQLLAPSSKKGKARLSPRNVGVISPYRKQV 838
Query: 575 QHLR---ERLD----DLPEAAGVEVATIDSFQGREADAVIISMVRSN 614
+ +R +LD L + ++V +++ FQG+E ++IS VRS+
Sbjct: 839 EKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSS 885
Score = 121 (47.7 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 48/154 (31%), Positives = 75/154 (48%)
Query: 557 AGVSPSAIAVQSPYVAQVQHLR---ERLD----DLPEAAGVEVATIDSFQGREADAVIIS 609
A +SP + V SPY QV+ +R +LD L + ++V +++ FQG+E ++IS
Sbjct: 821 ARLSPRNVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILIS 880
Query: 610 MVRSNTLGA-------VGFLGDSRRMNVAITRACKHVAVVCDSSTICHN----TFLARLL 658
VRS+ +GFL + +R NVA+TRA + VV + + H+ TFL
Sbjct: 881 TVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPDWKTFLEFCK 940
Query: 659 RHIRYFGRVKHAEPGSFGGSGL--GMDPMLPSIS 690
+ Y G A+ G L G+ + PS S
Sbjct: 941 ENGGYTGCPFPAKLDLQQGQDLLQGLSKLSPSTS 974
Score = 97 (39.2 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 241 KAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGER--VLVTAPTNAAVDNMVEK 298
K I G + P +I GPPGTGKT L E I + V+ + +L AP+N+ D + ++
Sbjct: 509 KHIVRGTTRPAPYIIF-GPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQR 567
Query: 299 LS-DVGLNIVRVGNPAR 314
L + +I R+ P+R
Sbjct: 568 LRVHLPSSIYRLLAPSR 584
Score = 37 (18.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 296 VEKLSDVGLNIVRVGNPARISPAVAS 321
V++ + G +V G+P ++ P + S
Sbjct: 666 VKETGNPGGQLVLAGDPRQLGPVLRS 691
>FB|FBgn0035842 [details] [associations]
symbol:CG7504 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005875 "microtubule associated complex" evidence=IDA]
InterPro:IPR000253 InterPro:IPR008984 Pfam:PF00498 PROSITE:PS50006
SMART:SM00240 GO:GO:0005875 EMBL:AE014296 GO:GO:0006200
GO:GO:0016887 Gene3D:2.60.200.20 SUPFAM:SSF49879 eggNOG:COG1112
KO:K10706 GeneTree:ENSGT00580000081652 RefSeq:NP_001137907.1
UniGene:Dm.31993 ProteinModelPortal:B7Z0D7 SMR:B7Z0D7 STRING:B7Z0D7
PaxDb:B7Z0D7 EnsemblMetazoa:FBtr0273367 GeneID:38904
KEGG:dme:Dmel_CG7504 FlyBase:FBgn0035842 OMA:NRSKSCY
OrthoDB:EOG4DV42G GenomeRNAi:38904 NextBio:810939 Bgee:B7Z0D7
Uniprot:B7Z0D7
Length = 1676
Score = 164 (62.8 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 73/239 (30%), Positives = 108/239 (45%)
Query: 418 ILAGDQCQLAPVILSRKALEGGIGVSLLERAA-TLHE-----G---VLATKL---TTQYR 465
+L GD QL V+LS+KA++ G+ S+ +R +L G ++ TKL +TQYR
Sbjct: 1413 VLVGDMQQLPAVVLSKKAIDFGLSNSMFDRIQRSLQTQLDKPGSYHLMHTKLFKLSTQYR 1472
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ I W ++ Y LI++ A F P I C + L Y S G
Sbjct: 1473 MHPEICRWPNQYFYEDQLINAECTAR-------FASPL-IPYCVI-----NLKYTCDSNG 1519
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPS-AIAVQSPYVAQVQHLRERLDDL 584
+ S N EA V + + S + + SPY Q L + +
Sbjct: 1520 AQNK-------SISNNEEARFVAKLLTEMDKHMPSKRFSYGLISPYQNQCYALSQVI--- 1569
Query: 585 PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVC 643
P + T+DS+QG E D +IIS R T G GFL + +R+NVA+TR + V+C
Sbjct: 1570 PSHMNITPQTVDSYQGLEKDVIIISNAR--TRGC-GFLTNYQRLNVALTRP-RRCLVIC 1624
Score = 87 (35.7 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQG------ERVLVTAPTNAAVDNMVEKLSDV 302
L +IQGPPGTGK+ ++ E+ + + ++L+ A +N AVD++V L V
Sbjct: 1195 LTLIQGPPGTGKSRVISELCLQTLYGNAAKTLDRKILICAHSNTAVDHIVGLLGSV 1250
Score = 47 (21.6 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 324 LGEIVKSKLASFVAEFERKKSDLRKDLRQCLK 355
L + K ++S + +E K++ L L+ CLK
Sbjct: 428 LPAVRKLSVSSIDSVYENKQTKLNSKLKSCLK 459
Score = 39 (18.8 bits), Expect = 8.3e-06, Sum P(3) = 8.3e-06
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 288 TNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKL 332
T+ + N+ + SD LN V NP + + EI + K+
Sbjct: 190 TSEEIQNIFGEPSDAILNSVLELNPYLYNKLTNKTANNEITRKKI 234
Score = 38 (18.4 bits), Expect = 8.3e-06, Sum P(3) = 8.3e-06
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 340 ERKKSDLRKDLRQCLK 355
ERK+++L ++ R C K
Sbjct: 874 ERKEAELARNQRTCNK 889
>RGD|1598327 [details] [associations]
symbol:Mov10 "Moloney leukemia virus 10" species:10116 "Rattus
norvegicus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA;ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0035279 "mRNA cleavage involved in gene silencing
by miRNA" evidence=IEA;ISO] InterPro:IPR003593 SMART:SM00382
RGD:1598327 GO:GO:0005524 GO:GO:0017111 GO:GO:0000932 GO:GO:0035279
InterPro:IPR026122 PANTHER:PTHR10887:SF17
GeneTree:ENSGT00550000074391 EMBL:CH474015 OrthoDB:EOG4SXNC4
CTD:4343 IPI:IPI00192859 RefSeq:NP_001101181.1 UniGene:Rn.3508
Ensembl:ENSRNOT00000018061 GeneID:310756 KEGG:rno:310756
UCSC:RGD:1598327 NextBio:662562 Uniprot:D3ZUC2
Length = 1004
Score = 153 (58.9 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 65/227 (28%), Positives = 105/227 (46%)
Query: 414 GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL----------HEGVLATKLTTQ 463
G + +LAGD QL PV+ S A + G+G SLLER T ++ TKL
Sbjct: 673 GGQLVLAGDPRQLGPVLRSPLAQKHGLGYSLLERLLTYNSLYKKGPNGYDPQFITKLLRN 732
Query: 464 YRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQ--CPLLLLDTRLPYGS 521
YR + I ++ Y G L + + V F + + Q P++ +G
Sbjct: 733 YRSHPTILDIPNQLYYDGELQACADVVDR----ERFCRWEGLPQQGFPIIF------HGV 782
Query: 522 LSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC-------AGVSPSAIAVQSPYVAQV 574
+ G +E + SF+N EA V ++ L+ A +SP ++ V SPY QV
Sbjct: 783 M--GKDERE--GNSPSFFNPEEAATVTSYLRQLLAPSSKKGKARLSPRSVGVISPYRKQV 838
Query: 575 QHLR---ERLD----DLPEAAGVEVATIDSFQGREADAVIISMVRSN 614
+ +R +LD L + ++V +++ FQG+E ++IS VRS+
Sbjct: 839 EKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSS 885
Score = 124 (48.7 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 48/154 (31%), Positives = 76/154 (49%)
Query: 557 AGVSPSAIAVQSPYVAQVQHLR---ERLD----DLPEAAGVEVATIDSFQGREADAVIIS 609
A +SP ++ V SPY QV+ +R +LD L + ++V +++ FQG+E ++IS
Sbjct: 821 ARLSPRSVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILIS 880
Query: 610 MVRSNTLGA-------VGFLGDSRRMNVAITRACKHVAVVCDSSTICHN----TFLARLL 658
VRS+ +GFL + +R NVA+TRA + VV + + H+ TFL
Sbjct: 881 TVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPDWKTFLEFCK 940
Query: 659 RHIRYFGRVKHAEPGSFGGSGL--GMDPMLPSIS 690
+ Y G A+ G L G+ + PS S
Sbjct: 941 ENGGYTGCPFPAKLDLQQGQDLLQGLSKLSPSTS 974
Score = 93 (37.8 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 241 KAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGER--VLVTAPTNAAVDNMVEK 298
K I G + P +I GPPGTGKT L E I + V+ + +L P+N+ D + ++
Sbjct: 509 KHIVRGTTRPAPYIIF-GPPGTGKTVTLVEAIKQVVKHLPKAHILACTPSNSGADLLCQR 567
Query: 299 LS-DVGLNIVRVGNPAR 314
L + +I R+ P+R
Sbjct: 568 LRVHLPSSIYRLLAPSR 584
Score = 50 (22.7 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 484 ISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSL---SLGCEEHLDLAGTGSFY 539
++ S +A+ L TPF +P +T+ P+ R+ G + G E L LA G++Y
Sbjct: 241 VAHSPLAAQLKPTTPFKRPPRLTRNPVST--NRIEEGERPDRAKGYELELSLA-LGTYY 296
Score = 37 (18.1 bits), Expect = 9.3e-06, Sum P(2) = 9.3e-06
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 296 VEKLSDVGLNIVRVGNPARISPAVAS 321
V++ + G +V G+P ++ P + S
Sbjct: 666 VKETGNPGGQLVLAGDPRQLGPVLRS 691
>RGD|1589127 [details] [associations]
symbol:LOC684558 "similar to regulator of nonsense transcripts
1" species:10116 "Rattus norvegicus" [GO:0000785 "chromatin"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0009048 "dosage compensation by inactivation of X chromosome"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IEA]
[GO:0071044 "histone mRNA catabolic process" evidence=IEA]
GO:GO:0006260 GO:GO:0006281 GO:GO:0000785 GO:GO:0003682
GO:GO:0007049 GO:GO:0071044 GO:GO:0009048 GO:GO:0004004
GO:GO:0035145 GeneTree:ENSGT00550000074391 IPI:IPI00767398
PRIDE:F1LY19 Ensembl:ENSRNOT00000027268 Uniprot:F1LY19
Length = 391
Score = 185 (70.2 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 49/141 (34%), Positives = 74/141 (52%)
Query: 527 EEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD---D 583
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 27 QEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGS 85
Query: 584 LPEAA--GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAV 641
L VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V +
Sbjct: 86 LHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVII 145
Query: 642 VCDSSTICHNTFLARLLRHIR 662
V + + LL + +
Sbjct: 146 VGNPKALSKQPLWNHLLSYYK 166
>FB|FBgn0036451 [details] [associations]
symbol:CG9425 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR003593
InterPro:IPR007087 InterPro:IPR011990 InterPro:IPR015880
Pfam:PF00642 PROSITE:PS00028 SMART:SM00355 SMART:SM00382
GO:GO:0005524 EMBL:AE014296 GO:GO:0008270 GO:GO:0003676
GO:GO:0005622 Gene3D:1.25.40.10 GO:GO:0017111 eggNOG:COG1112
GeneTree:ENSGT00550000074391 RefSeq:NP_996084.1 UniGene:Dm.11708
ProteinModelPortal:Q7KUL0 SMR:Q7KUL0 STRING:Q7KUL0 PaxDb:Q7KUL0
PRIDE:Q7KUL0 EnsemblMetazoa:FBtr0075693 EnsemblMetazoa:FBtr0333074
EnsemblMetazoa:FBtr0333075 GeneID:39613 KEGG:dme:Dmel_CG9425
UCSC:CG9425-RB FlyBase:FBgn0036451 InParanoid:Q7KUL0 OMA:WINELSG
OrthoDB:EOG46HDRH PhylomeDB:Q7KUL0 ChiTaRS:CG9425 GenomeRNAi:39613
NextBio:814517 ArrayExpress:Q7KUL0 Bgee:Q7KUL0 Uniprot:Q7KUL0
Length = 2103
Score = 131 (51.2 bits), Expect = 7.5e-11, Sum P(3) = 7.5e-11
Identities = 59/206 (28%), Positives = 89/206 (43%)
Query: 416 RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATK--LTTQYRMNDAIASW 473
R +LAGD Q++P + S A E + +SLLER + K L YR ++AI +
Sbjct: 979 RIVLAGDHMQMSPELFSAFAKERKLHISLLERLYDHYPSNFPCKILLCENYRAHEAIIRF 1038
Query: 474 ASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLA 533
S+ Y L++S H D + PL TR G E+ D
Sbjct: 1039 TSELFYEQKLVASGKQPRH---DRFY---------PLTFFTTR--------G-EDVQDKN 1077
Query: 534 GTGSFYNEGEAEIVVHHVFSL------ICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEA 587
T +FYN E VV V L ++ ++I + +PY QV +R L
Sbjct: 1078 ST-AFYNNAEVYEVVERVSELRKRWPSAWGKLNDTSIGIMTPYSDQVFRIRSELRKR-RM 1135
Query: 588 AGVEVATIDSFQGREADAVIISMVRS 613
G+ V + + QG++ AV +S VR+
Sbjct: 1136 GGISVERVLNVQGKQFRAVFLSTVRT 1161
Score = 93 (37.8 bits), Expect = 7.5e-11, Sum P(3) = 7.5e-11
Identities = 26/89 (29%), Positives = 46/89 (51%)
Query: 211 VTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKE 270
+ W + AD E KL+ + + AI L+ K P +++ GP GTGKT L +
Sbjct: 790 IPWTPKKQWADSCEPKLNAKQREAVN-----AITTALSIKLPPILLIGPFGTGKTYTLAQ 844
Query: 271 IIARAVQQGE-RVLVTAPTNAAVDNMVEK 298
I + + Q E ++L+ +N+A D +++
Sbjct: 845 AIKQLLTQPEAKILICTHSNSAADLYIKE 873
Score = 72 (30.4 bits), Expect = 7.5e-11, Sum P(3) = 7.5e-11
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 620 GFLGDSRRMNVAITRACKHVAVVCDSSTIC 649
GFL +S+ +N AITRA VAVV D +C
Sbjct: 1188 GFLSNSKLLNTAITRAQSLVAVVGDPVALC 1217
>FB|FBgn0041164 [details] [associations]
symbol:armi "armitage" species:7227 "Drosophila melanogaster"
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=ISS;IMP] [GO:0007319 "negative
regulation of oskar mRNA translation" evidence=IMP] [GO:0000578
"embryonic axis specification" evidence=NAS;IMP] [GO:0016325
"oocyte microtubule cytoskeleton organization" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0007317 "regulation of
pole plasm oskar mRNA localization" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0003678 "DNA helicase activity"
evidence=NAS] [GO:0030425 "dendrite" evidence=IDA] [GO:0043025
"neuronal cell body" evidence=IDA] [GO:0007616 "long-term memory"
evidence=IMP] [GO:0030424 "axon" evidence=IDA] [GO:0045202
"synapse" evidence=IDA] [GO:0031023 "microtubule organizing center
organization" evidence=IMP] [GO:0046843 "dorsal appendage
formation" evidence=IMP] [GO:0007318 "pole plasm protein
localization" evidence=IMP] [GO:0070725 "Yb body" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] GO:GO:0005524
GO:GO:0005737 EMBL:AE014296 GO:GO:0016246 GO:GO:0000184
GO:GO:0030424 GO:GO:0043025 GO:GO:0030425 GO:GO:0007616
GO:GO:0045202 GO:GO:0007318 eggNOG:COG1112 EMBL:AY598469
RefSeq:NP_001014556.1 RefSeq:NP_647816.2 ProteinModelPortal:Q6J5K9
SMR:Q6J5K9 IntAct:Q6J5K9 STRING:Q6J5K9 PaxDb:Q6J5K9 GeneID:38427
KEGG:dme:Dmel_CG11513 UCSC:CG11513-RA CTD:38427 FlyBase:FBgn0041164
InParanoid:Q6J5K9 OMA:ITISTCT OrthoDB:EOG4DZ094 PhylomeDB:Q6J5K9
GenomeRNAi:38427 NextBio:808602 Bgee:Q6J5K9 GermOnline:CG11513
GO:GO:0070725 GO:GO:0003678 GO:GO:0046843 GO:GO:0031023
InterPro:IPR026122 PANTHER:PTHR10887:SF17 Uniprot:Q6J5K9
Length = 1274
Score = 143 (55.4 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 66/243 (27%), Positives = 113/243 (46%)
Query: 418 ILAGDQCQLAPVILSRKALEGGIGVSLLERA---------------ATLHEGVLATKLTT 462
+L+GD QL ++ SR A + G +S LER ++ + ++ TKL
Sbjct: 973 VLSGDPRQLQSIVTSRIASKMGFSISFLERLLERSPYRKDLQRFPESSGYNPLVLTKLLY 1032
Query: 463 QYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP--YG 520
YR +I S S+ Y LI V S D+ + +C + + +P +G
Sbjct: 1033 NYRALPSIMSIYSRLFYDDELIP---VLSEK--DSRESRLLSKLRC-VFESEKDIPQAHG 1086
Query: 521 SLSLGC-EEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRE 579
+ G E+ + S++N E V +L A V+ I + +PY QV+ LR
Sbjct: 1087 TFFYGIIGENRQNNDSPSWFNPQEVREVFLMTIALYRANVTADQIGIITPYQKQVKMLRS 1146
Query: 580 RLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNT----LGA---VGFLGDSRRMNVAI 632
+ ++ +++ FQG+E D ++IS VRS+ + A +GF+ S+R+NVA+
Sbjct: 1147 MFIGT-DVVMPKIGSVEEFQGQERDIILISTVRSSEEILRMDARFSLGFVRCSKRLNVAV 1205
Query: 633 TRA 635
+RA
Sbjct: 1206 SRA 1208
Score = 97 (39.2 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 29/96 (30%), Positives = 51/96 (53%)
Query: 208 KEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGL 267
K+D +L ++ L +W L+ I + + I G + P ++ GPPG+GKT
Sbjct: 766 KDDDMYLYDSKL-EWYNQSLNSIQKRAVFN-----ILRGEAENIPYVLF-GPPGSGKTMT 818
Query: 268 LKEIIARAVQQ--GERVLVTAPTNAAVDNMVEKLSD 301
L E + + V+ G R+LV P+N++ D + ++L D
Sbjct: 819 LIETLLQLVRNLPGARILVGTPSNSSADLVTKRLID 854
>RGD|1306056 [details] [associations]
symbol:Pric285 "peroxisomal proliferator-activated receptor A
interacting complex 285" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0004540 "ribonuclease activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001900 InterPro:IPR003593 InterPro:IPR026855
Pfam:PF00773 SMART:SM00382 SMART:SM00955 RGD:1306056 GO:GO:0005524
GO:GO:0003723 GO:GO:0004386 GO:GO:0004540 PANTHER:PTHR10887:SF16
GeneTree:ENSGT00550000074391 IPI:IPI00567928 RefSeq:XP_001057758.2
RefSeq:XP_230961.5 UniGene:Rn.47450 ProteinModelPortal:D4ADC2
Ensembl:ENSRNOT00000017787 GeneID:296474 KEGG:rno:296474
UCSC:RGD:1306056 CTD:296474 OrthoDB:EOG4Q84WM NextBio:641262
ArrayExpress:D4ADC2 Uniprot:D4ADC2
Length = 2944
Score = 161 (61.7 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 73/244 (29%), Positives = 105/244 (43%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
++ +L GD QL PV+ + + G+ SL ER H A L TQYRM+ I S+
Sbjct: 2676 EKVVLLGDHKQLRPVVKNEQLRNLGMDRSLFER---YHRD--AIMLDTQYRMHKDICSFP 2730
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAG 534
S E YGG L S L + CP++ + L + EE
Sbjct: 2731 SMEFYGGKL----KTWSDLKRPPSLLGHVGKQSCPVIFGSVQGYEQKLLVSTEE----GN 2782
Query: 535 TGSFYNEGEAEIVVHHVFSL-ICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVA 593
S N E VV + L + V P +AV +PY AQ + L GV V
Sbjct: 2783 ENSRANPEEVTEVVRIIKQLTLDRTVDPKDVAVLTPYNAQAAAISRGLMQRG-VTGVTVT 2841
Query: 594 TIDSFQGREADAVIISMVRS---NTLGA----------VGFLGDSRRMNVAITRACKHVA 640
+I QG E VI+S VR+ + + +GF+ D ++NVAITRA + +
Sbjct: 2842 SITKSQGSEWRYVIVSTVRTCPRSDMDQRPTKSWLKKFLGFVVDPHQVNVAITRAQEGLC 2901
Query: 641 VVCD 644
++ D
Sbjct: 2902 IIGD 2905
Score = 85 (35.0 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 27/74 (36%), Positives = 38/74 (51%)
Query: 234 TFDDSQKKAIALGL--------NKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLV 284
+F + K+ +A+GL +K P L+I GP GTGKT L VQQ +VL+
Sbjct: 757 SFRGNHKQKLAVGLIAGRRPEGSKHIPPLLIYGPFGTGKTYTLAMAALEVVQQPHTKVLI 816
Query: 285 TAPTNAAVDNMVEK 298
TN+A D V +
Sbjct: 817 CTHTNSAADIYVRE 830
Score = 75 (31.5 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKT 265
+ SQ KA+ L K+ +IQGPPGTGKT
Sbjct: 2448 NQSQDKAVRSALQKQ--FTVIQGPPGTGKT 2475
Score = 50 (22.7 bits), Expect = 6.8e-07, Sum P(2) = 6.8e-07
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 199 AAVVTLFGDKEDVTWLEENDL--ADWSEVKLDGIMGKTFDDSQKKAIAL 245
A V TL G +ED E+DL +DW D I+ + D+S++ + +
Sbjct: 1273 AEVSTLEGYEED----SESDLWPSDWELNADDAILKELLDESRQMTVTV 1317
Score = 39 (18.8 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 230 IMGKTFDDSQKKAIALGLNKKRPLLI 255
++ K D +K+ GL PL+I
Sbjct: 2328 VLSKQLPDLRKEEAVRGLKNASPLVI 2353
Score = 37 (18.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 86 GMHLVLFRVEGNHRLPPTTLSPGD 109
G H+V + N PT SP +
Sbjct: 2478 GFHIVYWFHRSNQEQMPTGSSPSE 2501
>DICTYBASE|DDB_G0274797 [details] [associations]
symbol:aqr "intron-binding protein aquarius homolog"
species:44689 "Dictyostelium discoideum" [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR024860 dictyBase:DDB_G0274797
GenomeReviews:CM000151_GR GO:GO:0005681 EMBL:AAFI02000012
GO:GO:0000398 eggNOG:COG1112 KO:K12874 OMA:RTKAVGH GO:GO:0097157
PANTHER:PTHR10887:SF5 RefSeq:XP_643918.1 ProteinModelPortal:Q555Z2
PRIDE:Q555Z2 EnsemblProtists:DDB0233439 GeneID:8619345
KEGG:ddi:DDB_G0274797 InParanoid:Q555Z2 ProtClustDB:CLSZ2431000
Uniprot:Q555Z2
Length = 1487
Score = 130 (50.8 bits), Expect = 5.1e-10, Sum P(3) = 5.1e-10
Identities = 74/266 (27%), Positives = 112/266 (42%)
Query: 415 KRCILAGDQCQLAPVILSRK-ALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASW 473
KR IL GD QL P++ ++ A SL R L + L Q R +I+
Sbjct: 1196 KRVILIGDHNQLPPIVQNQSLAKYSHFDQSLFTRLIRLE--IPHITLDRQGRSRPSISEL 1253
Query: 474 ASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLA 533
S + Y G L D P VK Q L + L Y + +E D
Sbjct: 1254 FSWK-YKG------------LQDLPLVKE----QLQFKLANPGLAYDYQLINVDES-DGY 1295
Query: 534 GTGS------FY-NEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRE--RLDDL 584
G G FY N GEAE +V LI G I V + Y Q LR+ +
Sbjct: 1296 GVGESEPTPYFYQNLGEAEYIVAMFQYLIAIGYPSEKITVLTTYNGQKNLLRDVFKAKCT 1355
Query: 585 PE-------AAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACK 637
P+ +++ TID +QG++ D +++S+VR+ G + D RR+ VA++RA
Sbjct: 1356 PQDPKKTQYGLPLKITTIDKYQGQQNDIILLSLVRTKQYGHIR---DVRRLIVAMSRARL 1412
Query: 638 HVAVVCDSSTI--CHNTFL--ARLLR 659
+ + C C+ T + ++LL+
Sbjct: 1413 GLYIFCKKQFFQNCYETSMVFSKLLK 1438
Score = 116 (45.9 bits), Expect = 5.1e-10, Sum P(3) = 5.1e-10
Identities = 34/116 (29%), Positives = 59/116 (50%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG--ERVLVTAPTNAAV 292
F Q +AI+ G+ K+ L +I GPPGTGKT + +II+ ER L+ +N A+
Sbjct: 864 FTSKQIEAISSGM-KRDNLTLIVGPPGTGKTDIAVQIISNIYHSSPNERTLIITHSNQAL 922
Query: 293 DNMVEKLSDVGLN---IVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSD 345
+ + EK+ + +N ++R+G+ + + S + K+ F + KK D
Sbjct: 923 NQLFEKIYRLDINERYLLRLGHGQKQLSSTNSTQK-DFTKTGRIDFWLDLRLKKLD 977
Score = 37 (18.1 bits), Expect = 5.1e-10, Sum P(3) = 5.1e-10
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 171 ADTLTYERNCEALMLLQKNGLHKRN 195
+D + + R CE + ++ N + N
Sbjct: 614 SDIVKHVRGCEVIEIIDNNNNNLNN 638
>WB|WBGene00014208 [details] [associations]
symbol:ZK1067.2 species:6239 "Caenorhabditis elegans"
[GO:0008168 "methyltransferase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] GeneTree:ENSGT00700000104467
EMBL:Z70038 RefSeq:NP_001254204.1 EnsemblMetazoa:ZK1067.2b
GeneID:174463 KEGG:cel:CELE_ZK1067.2 CTD:174463 WormBase:ZK1067.2b
OMA:THIGVQI Uniprot:E9P860
Length = 2443
Score = 137 (53.3 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 43/145 (29%), Positives = 79/145 (54%)
Query: 537 SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHL-RERLD---DLPEAAGVEV 592
S+ N+ E + V V L+ + + I V + Y AQ + RE + P++ + V
Sbjct: 1588 SWLNKHEISMTVALVKHLLKQNYTTNDIVVLATYSAQKNLMYREYANVFGSTPDSNVIPV 1647
Query: 593 ATIDSFQGREADAVIISMVRSNTLG----AVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
T+DSFQG+E VI+S+VRS+ G +GFL + R+ VA+TRA + ++ + + I
Sbjct: 1648 ETVDSFQGKERKIVIVSLVRSHRGGRENTGIGFLAVANRICVALTRAQHGMYIIGNGAYI 1707
Query: 649 CHNTFL-ARLLRHIRYFGRVKHAEP 672
+N+ L +++ ++R +++ P
Sbjct: 1708 MNNSELWNKIVNNLRRSNLIEYNLP 1732
Score = 102 (41.0 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 30/86 (34%), Positives = 44/86 (51%)
Query: 222 WSEVK--LDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG 279
W V LD D+SQ+ A K L +IQGPPGTGKT + +I+ +Q
Sbjct: 1025 WYNVSRLLDEFHPDYMDESQRLAFCNTF--KYELSLIQGPPGTGKTHIGVQIVKTILQNR 1082
Query: 280 ------ERVLVTAPTNAAVDNMVEKL 299
E +LV TN+ +DN++E++
Sbjct: 1083 SYWKITEPILVVCFTNSGLDNLLERI 1108
>UNIPROTKB|I6L9H4 [details] [associations]
symbol:HELZ "Probable helicase with zinc finger domain"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0008270 GO:GO:0003676 EMBL:AC005544 EMBL:AC007448
UniGene:Hs.370140 UniGene:Hs.569824 HGNC:HGNC:16878 ChiTaRS:HELZ
EMBL:BC094881 ProteinModelPortal:I6L9H4 Ensembl:ENST00000579953
Uniprot:I6L9H4
Length = 1163
Score = 126 (49.4 bits), Expect = 9.9e-10, Sum P(4) = 9.9e-10
Identities = 57/206 (27%), Positives = 89/206 (43%)
Query: 416 RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATK--LTTQYRMNDAIASW 473
R +LAGD QL+P + S A E + VSLL+R + + L YR ++AI ++
Sbjct: 817 RIVLAGDHMQLSPFVYSEFARERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINY 876
Query: 474 ASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLA 533
S+ Y G L++S +H K + PL R G E +
Sbjct: 877 TSELFYEGKLMASGKQPAH--------KDFY----PLTFFTAR--------G--EDVQEK 914
Query: 534 GTGSFYNEGEAEIVVHHVFSL-----ICAG-VSPSAIAVQSPYVAQVQHLRERLDDLPEA 587
+ +FYN E VV V L + G + +I V +PY QV +R L
Sbjct: 915 NSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRK-KRL 973
Query: 588 AGVEVATIDSFQGREADAVIISMVRS 613
+ V V + + QG++ + +S VR+
Sbjct: 974 SDVNVERVLNVQGKQFRVLFLSTVRT 999
Score = 87 (35.7 bits), Expect = 9.9e-10, Sum P(4) = 9.9e-10
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGE--RVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309
P+LII GP GTGKT L + + +QQ E R+L+ +N+A D ++ D V
Sbjct: 663 PVLII-GPYGTGKTFTLAQAVKHILQQQETSRILICTHSNSAADLYIK---DYLHPYVEA 718
Query: 310 GNP 312
GNP
Sbjct: 719 GNP 721
Score = 66 (28.3 bits), Expect = 9.9e-10, Sum P(4) = 9.9e-10
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 620 GFLGDSRRMNVAITRACKHVAVVCDSSTIC 649
GFL + + +N AITRA VAVV D +C
Sbjct: 1027 GFLSNYKLLNTAITRAQSLVAVVGDPIALC 1056
Score = 40 (19.1 bits), Expect = 9.9e-10, Sum P(4) = 9.9e-10
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 69 CDTICNLFVVSTSTGLGGMHLVLFRVEGNHRL-PPTTLSP 107
CDT L L MH L R++ N L P +++P
Sbjct: 585 CDTQVELQFQLNRLPLCEMHYALDRIKDNGVLFPDISMTP 624
>UNIPROTKB|E2R8C1 [details] [associations]
symbol:HELZ "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 CTD:9931 OMA:YRVALLY GeneTree:ENSGT00550000074391
EMBL:AAEX03006372 EMBL:AAEX03006373 EMBL:AAEX03006374
RefSeq:XP_862371.2 Ensembl:ENSCAFT00000018141 GeneID:490907
KEGG:cfa:490907 Uniprot:E2R8C1
Length = 1944
Score = 126 (49.4 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 57/206 (27%), Positives = 89/206 (43%)
Query: 416 RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATK--LTTQYRMNDAIASW 473
R +LAGD QL+P + S A E + VSLL+R + + L YR ++AI ++
Sbjct: 816 RIVLAGDHMQLSPFVYSEFARERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINY 875
Query: 474 ASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLA 533
S+ Y G L++S +H K + PL R G E +
Sbjct: 876 TSELFYEGKLMASGKQPAH--------KDFY----PLTFFTAR--------G--EDVQEK 913
Query: 534 GTGSFYNEGEAEIVVHHVFSL-----ICAG-VSPSAIAVQSPYVAQVQHLRERLDDLPEA 587
+ +FYN E VV V L + G + +I V +PY QV +R L
Sbjct: 914 NSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRK-KRL 972
Query: 588 AGVEVATIDSFQGREADAVIISMVRS 613
+ V V + + QG++ + +S VR+
Sbjct: 973 SDVNVERVLNVQGKQFRVLFLSTVRT 998
Score = 92 (37.4 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 242 AIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLS 300
AI L+ + P ++I GP GTGKT L + + +QQ E R+L+ +N+A D ++
Sbjct: 652 AITTPLSIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQETRILICTHSNSAADLYIK--- 708
Query: 301 DVGLNIVRVGNP 312
D V GNP
Sbjct: 709 DYLHPYVEAGNP 720
Score = 66 (28.3 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 620 GFLGDSRRMNVAITRACKHVAVVCDSSTIC 649
GFL + + +N AITRA VAVV D +C
Sbjct: 1026 GFLSNYKLLNTAITRAQSLVAVVGDPIALC 1055
>UNIPROTKB|F1RSM3 [details] [associations]
symbol:HELZ "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 CTD:9931 OMA:YRVALLY GeneTree:ENSGT00550000074391
EMBL:CU466377 EMBL:CU639426 EMBL:CU929837 RefSeq:XP_003131321.1
UniGene:Ssc.13421 Ensembl:ENSSSCT00000018802 GeneID:100524104
KEGG:ssc:100524104 Uniprot:F1RSM3
Length = 1944
Score = 126 (49.4 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 57/206 (27%), Positives = 89/206 (43%)
Query: 416 RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATK--LTTQYRMNDAIASW 473
R +LAGD QL+P + S A E + VSLL+R + + L YR ++AI ++
Sbjct: 816 RIVLAGDHMQLSPFVYSEFARERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINY 875
Query: 474 ASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLA 533
S+ Y G L++S +H K + PL R G E +
Sbjct: 876 TSELFYEGKLMASGKQPAH--------KDFY----PLTFFTAR--------G--EDVQEK 913
Query: 534 GTGSFYNEGEAEIVVHHVFSL-----ICAG-VSPSAIAVQSPYVAQVQHLRERLDDLPEA 587
+ +FYN E VV V L + G + +I V +PY QV +R L
Sbjct: 914 NSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRK-KRL 972
Query: 588 AGVEVATIDSFQGREADAVIISMVRS 613
+ V V + + QG++ + +S VR+
Sbjct: 973 SDVNVERVLNVQGKQFRVLFLSTVRT 998
Score = 92 (37.4 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 242 AIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLS 300
AI L+ + P ++I GP GTGKT L + + +QQ E R+L+ +N+A D ++
Sbjct: 652 AITTPLSIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQETRILICTHSNSAADLYIK--- 708
Query: 301 DVGLNIVRVGNP 312
D V GNP
Sbjct: 709 DYLHPYVEAGNP 720
Score = 66 (28.3 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 620 GFLGDSRRMNVAITRACKHVAVVCDSSTIC 649
GFL + + +N AITRA VAVV D +C
Sbjct: 1026 GFLSNYKLLNTAITRAQSLVAVVGDPIALC 1055
>RGD|1565575 [details] [associations]
symbol:Setx "senataxin" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=IEA;ISO] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=ISO] [GO:0007623 "circadian rhythm"
evidence=ISO] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR026121 RGD:1565575 GO:GO:0006302 PANTHER:PTHR10887:SF15
IPI:IPI00560336 Ensembl:ENSRNOT00000018281 UCSC:RGD:1565575
ArrayExpress:F1M0E2 Uniprot:F1M0E2
Length = 380
Score = 132 (51.5 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 29/84 (34%), Positives = 51/84 (60%)
Query: 591 EVATIDSFQGREADAVIISMVRSNTL-GAVGFLGDSRRMNVAITRACKHVAVVCDSSTIC 649
EV T+D+FQGR+ D +I++ VR++ + G++GFL +R+NV ITRA + ++ T+
Sbjct: 274 EVDTVDAFQGRQKDCIIVTCVRASAVQGSIGFLASLQRLNVTITRAKYSLFILGHLRTLM 333
Query: 650 HNTFLARLLRHIRYFGRV-KHAEP 672
N L++ + G + K +P
Sbjct: 334 ENQHWYELIQDAQKRGAIIKTCDP 357
Score = 85 (35.0 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 37/120 (30%), Positives = 54/120 (45%)
Query: 407 LDTFDLVGKRC---ILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHE--------GV 455
++T + RC +L GD QL P ++S KA E G S++ R L E G
Sbjct: 38 VETLSPLIHRCNKLVLVGDPKQLPPTVISMKAQEYGYDQSMMARFCKLLEENVEQNMIGR 97
Query: 456 LAT-KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLD 514
L +LT QYRM+ I + S +Y +L ++ L +T W Q P L+ D
Sbjct: 98 LPVLQLTIQYRMHPDICLFPSNYVYNKNL------KTNRLTETIRCSSEWPFQ-PYLVFD 150
Score = 39 (18.8 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 21/64 (32%), Positives = 26/64 (40%)
Query: 266 GLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDV--GLN-IVRVGNPARISPAVASK 322
GLL E R Q G A VE LS + N +V VG+P ++ P V S
Sbjct: 9 GLLLESAFRG-QGGVPFSCVIVDEAGQSCEVETLSPLIHRCNKLVLVGDPKQLPPTVISM 67
Query: 323 SLGE 326
E
Sbjct: 68 KAQE 71
>UNIPROTKB|Q81NI5 [details] [associations]
symbol:BAS2982 "Conserved domain protein" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR RefSeq:NP_845517.1 RefSeq:YP_019848.1
RefSeq:YP_029239.1 ProteinModelPortal:Q81NI5 IntAct:Q81NI5
DNASU:1087476 EnsemblBacteria:EBBACT00000012886
EnsemblBacteria:EBBACT00000015522 EnsemblBacteria:EBBACT00000022854
GeneID:1087476 GeneID:2817117 GeneID:2850799 KEGG:ban:BA_3207
KEGG:bar:GBAA_3207 KEGG:bat:BAS2982 HOGENOM:HOG000093512
OMA:EVSMAYV ProtClustDB:CLSK916959
BioCyc:BANT260799:GJAJ-3044-MONOMER
BioCyc:BANT261594:GJ7F-3148-MONOMER Uniprot:Q81NI5
Length = 759
Score = 122 (48.0 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 66/271 (24%), Positives = 113/271 (41%)
Query: 413 VGKRCILAGDQCQLAPVILSRKAL-EGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIA 471
+GKR ++ GD QL P+ ++ L +G + H G++ + ++ N +
Sbjct: 357 LGKRIVVCGDFLQLPPIAMANHELVRKWLGEDMF-----YHAGIVESVNKSEAHPNLFML 411
Query: 472 SWASKEMYGG-SLISSSTVASHLLVDTPFVKPTW-ITQCPLLLLDTRLPYGSLSLGCEEH 529
+ M+ S ++S + + + D P V + Q + + + + +G
Sbjct: 412 Q-EQRRMHADISKFTNSFIYKNRVYDHPSVSERKELAQLQPFANEASVLFDTSQMGAFSL 470
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHL----RERLDDLP 585
D A +GS +N + + + + GV +I + +PY AQ + L RE L
Sbjct: 471 KD-AASGSRFNIMSGLVAMQMMLIGLLDGVQ--SIGIVTPYRAQSRFLSTCIREMLQRTK 527
Query: 586 -EAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFL----GDSRRMNVAITRACKHVA 640
+ V AT+ FQG E D +I V S G L + R +NVA+TRA
Sbjct: 528 YQNIPVLAATVHKFQGSERDMMIFDTVDSYPQERPGVLFFDHKNHRLVNVAVTRARGKFI 587
Query: 641 VVCDSSTICHNTF----LARLLRHIRYFGRV 667
+ D +C N L++L HI G V
Sbjct: 588 QLSDCHYMCKNLSRKQALSQLTAHIERHGDV 618
Score = 104 (41.7 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLS 300
P + GPPGTGK+ L II+ Q+G+ VLV A +NAAVD ++ +++
Sbjct: 166 PTTYVWGPPGTGKSYNLSRIISAHYQKGKSVLVLAHSNAAVDVLMSEVT 214
>TIGR_CMR|BA_3207 [details] [associations]
symbol:BA_3207 "conserved domain protein" species:198094
"Bacillus anthracis str. Ames" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR
RefSeq:NP_845517.1 RefSeq:YP_019848.1 RefSeq:YP_029239.1
ProteinModelPortal:Q81NI5 IntAct:Q81NI5 DNASU:1087476
EnsemblBacteria:EBBACT00000012886 EnsemblBacteria:EBBACT00000015522
EnsemblBacteria:EBBACT00000022854 GeneID:1087476 GeneID:2817117
GeneID:2850799 KEGG:ban:BA_3207 KEGG:bar:GBAA_3207 KEGG:bat:BAS2982
HOGENOM:HOG000093512 OMA:EVSMAYV ProtClustDB:CLSK916959
BioCyc:BANT260799:GJAJ-3044-MONOMER
BioCyc:BANT261594:GJ7F-3148-MONOMER Uniprot:Q81NI5
Length = 759
Score = 122 (48.0 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 66/271 (24%), Positives = 113/271 (41%)
Query: 413 VGKRCILAGDQCQLAPVILSRKAL-EGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIA 471
+GKR ++ GD QL P+ ++ L +G + H G++ + ++ N +
Sbjct: 357 LGKRIVVCGDFLQLPPIAMANHELVRKWLGEDMF-----YHAGIVESVNKSEAHPNLFML 411
Query: 472 SWASKEMYGG-SLISSSTVASHLLVDTPFVKPTW-ITQCPLLLLDTRLPYGSLSLGCEEH 529
+ M+ S ++S + + + D P V + Q + + + + +G
Sbjct: 412 Q-EQRRMHADISKFTNSFIYKNRVYDHPSVSERKELAQLQPFANEASVLFDTSQMGAFSL 470
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHL----RERLDDLP 585
D A +GS +N + + + + GV +I + +PY AQ + L RE L
Sbjct: 471 KD-AASGSRFNIMSGLVAMQMMLIGLLDGVQ--SIGIVTPYRAQSRFLSTCIREMLQRTK 527
Query: 586 -EAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFL----GDSRRMNVAITRACKHVA 640
+ V AT+ FQG E D +I V S G L + R +NVA+TRA
Sbjct: 528 YQNIPVLAATVHKFQGSERDMMIFDTVDSYPQERPGVLFFDHKNHRLVNVAVTRARGKFI 587
Query: 641 VVCDSSTICHNTF----LARLLRHIRYFGRV 667
+ D +C N L++L HI G V
Sbjct: 588 QLSDCHYMCKNLSRKQALSQLTAHIERHGDV 618
Score = 104 (41.7 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLS 300
P + GPPGTGK+ L II+ Q+G+ VLV A +NAAVD ++ +++
Sbjct: 166 PTTYVWGPPGTGKSYNLSRIISAHYQKGKSVLVLAHSNAAVDVLMSEVT 214
>MGI|MGI:1925705 [details] [associations]
symbol:Helz "helicase with zinc finger domain" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 MGI:MGI:1925705
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 GO:GO:0004386 eggNOG:COG1112 CTD:9931
HOGENOM:HOG000231202 HOVERGEN:HBG031603 EMBL:AB093209 EMBL:AL645947
EMBL:BC021818 EMBL:BC076626 EMBL:BC130582 EMBL:AK033094
IPI:IPI00453654 IPI:IPI00649664 IPI:IPI00915056 RefSeq:NP_938040.1
UniGene:Mm.272047 UniGene:Mm.394603 UniGene:Mm.490425
ProteinModelPortal:Q6DFV5 SMR:Q6DFV5 IntAct:Q6DFV5 STRING:Q6DFV5
PhosphoSite:Q6DFV5 PaxDb:Q6DFV5 PRIDE:Q6DFV5
Ensembl:ENSMUST00000075012 Ensembl:ENSMUST00000106746 GeneID:78455
KEGG:mmu:78455 UCSC:uc007mav.1 GeneTree:ENSGT00550000074391
InParanoid:Q8BZZ6 NextBio:348914 Bgee:Q6DFV5 Genevestigator:Q6DFV5
Uniprot:Q6DFV5
Length = 1964
Score = 126 (49.4 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 57/206 (27%), Positives = 89/206 (43%)
Query: 416 RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATK--LTTQYRMNDAIASW 473
R +LAGD QL+P + S A E + VSLL+R + + L YR ++AI ++
Sbjct: 816 RIVLAGDHMQLSPFVYSEFARERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINY 875
Query: 474 ASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLA 533
S+ Y G L++S +H K + PL R G E +
Sbjct: 876 TSELFYEGKLMASGKQPAH--------KDFY----PLTFFTAR--------G--EDVQEK 913
Query: 534 GTGSFYNEGEAEIVVHHVFSL-----ICAG-VSPSAIAVQSPYVAQVQHLRERLDDLPEA 587
+ +FYN E VV V L + G + +I V +PY QV +R L
Sbjct: 914 NSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRK-KRL 972
Query: 588 AGVEVATIDSFQGREADAVIISMVRS 613
+ V V + + QG++ + +S VR+
Sbjct: 973 SDVNVERVLNVQGKQFRVLFLSTVRT 998
Score = 88 (36.0 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 242 AIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLS 300
AI L+ + P ++I GP GTGKT L + +QQ E R+L+ +N+A D ++
Sbjct: 652 AITTPLSIQLPPVLIIGPYGTGKTFTLAQAAKHILQQQETRILICTHSNSAADLYIK--- 708
Query: 301 DVGLNIVRVGNP 312
D V GNP
Sbjct: 709 DYLHPYVEAGNP 720
Score = 66 (28.3 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 620 GFLGDSRRMNVAITRACKHVAVVCDSSTIC 649
GFL + + +N AITRA VAVV D +C
Sbjct: 1026 GFLSNYKLLNTAITRAQSLVAVVGDPVALC 1055
>UNIPROTKB|F1NPN9 [details] [associations]
symbol:LOC100857488 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR011990 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0008270 GO:GO:0003676 Gene3D:1.25.40.10 OMA:YRVALLY
GeneTree:ENSGT00550000074391 EMBL:AADN02030025 IPI:IPI00575663
Ensembl:ENSGALT00000005876 Uniprot:F1NPN9
Length = 1931
Score = 126 (49.4 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 57/206 (27%), Positives = 89/206 (43%)
Query: 416 RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATK--LTTQYRMNDAIASW 473
R +LAGD QL+P + S A E + VSLL+R + + L YR ++AI ++
Sbjct: 805 RIVLAGDHMQLSPFVYSEFARERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINY 864
Query: 474 ASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLA 533
S+ Y G L++S +H K + PL R G E +
Sbjct: 865 TSELFYEGKLMASGKQPAH--------KDFY----PLTFFTAR--------G--EDVQEK 902
Query: 534 GTGSFYNEGEAEIVVHHVFSL-----ICAG-VSPSAIAVQSPYVAQVQHLRERLDDLPEA 587
+ +FYN E VV V L + G + +I V +PY QV +R L
Sbjct: 903 NSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRK-KRL 961
Query: 588 AGVEVATIDSFQGREADAVIISMVRS 613
+ V V + + QG++ + +S VR+
Sbjct: 962 SDVSVERVLNVQGKQFRVLFLSTVRT 987
Score = 87 (35.7 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 25/73 (34%), Positives = 39/73 (53%)
Query: 242 AIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE--RVLVTAPTNAAVDNMVEKL 299
AI L+ + P ++I GP GTGKT L + + +QQ + R+L+ +N+A D ++
Sbjct: 640 AITTPLSIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQDTSRILICTHSNSAADLYIK-- 697
Query: 300 SDVGLNIVRVGNP 312
D V GNP
Sbjct: 698 -DYLHPYVEAGNP 709
Score = 66 (28.3 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 620 GFLGDSRRMNVAITRACKHVAVVCDSSTIC 649
GFL + + +N AITRA VAVV D +C
Sbjct: 1015 GFLSNYKLLNTAITRAQSLVAVVGDPIALC 1044
>UNIPROTKB|P42694 [details] [associations]
symbol:HELZ "Probable helicase with zinc finger domain"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 GO:GO:0004386 eggNOG:COG1112 HOVERGEN:HBG031603
OrthoDB:EOG4NP72K EMBL:D29677 EMBL:AC005544 EMBL:AC007448
IPI:IPI00000897 UniGene:Hs.370140 UniGene:Hs.569824
ProteinModelPortal:P42694 SMR:P42694 IntAct:P42694 STRING:P42694
PhosphoSite:P42694 DMDM:221222452 PaxDb:P42694 PRIDE:P42694
Ensembl:ENST00000358691 UCSC:uc002jfx.4 GeneCards:GC17M065066
HGNC:HGNC:16878 HPA:HPA028276 MIM:606699 neXtProt:NX_P42694
InParanoid:P42694 OMA:YRVALLY ChiTaRS:HELZ ArrayExpress:P42694
Bgee:P42694 CleanEx:HS_HELZ Genevestigator:P42694
GermOnline:ENSG00000198265 Uniprot:P42694
Length = 1942
Score = 126 (49.4 bits), Expect = 5.4e-09, Sum P(4) = 5.4e-09
Identities = 57/206 (27%), Positives = 89/206 (43%)
Query: 416 RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATK--LTTQYRMNDAIASW 473
R +LAGD QL+P + S A E + VSLL+R + + L YR ++AI ++
Sbjct: 816 RIVLAGDHMQLSPFVYSEFARERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINY 875
Query: 474 ASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLA 533
S+ Y G L++S +H K + PL R G E +
Sbjct: 876 TSELFYEGKLMASGKQPAH--------KDFY----PLTFFTAR--------G--EDVQEK 913
Query: 534 GTGSFYNEGEAEIVVHHVFSL-----ICAG-VSPSAIAVQSPYVAQVQHLRERLDDLPEA 587
+ +FYN E VV V L + G + +I V +PY QV +R L
Sbjct: 914 NSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRK-KRL 972
Query: 588 AGVEVATIDSFQGREADAVIISMVRS 613
+ V V + + QG++ + +S VR+
Sbjct: 973 SDVNVERVLNVQGKQFRVLFLSTVRT 998
Score = 89 (36.4 bits), Expect = 5.4e-09, Sum P(4) = 5.4e-09
Identities = 25/62 (40%), Positives = 35/62 (56%)
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
P+LII GP GTGKT L + + +QQ E R+L+ +N+A D ++ D V G
Sbjct: 663 PVLII-GPYGTGKTFTLAQAVKHILQQQETRILICTHSNSAADLYIK---DYLHPYVEAG 718
Query: 311 NP 312
NP
Sbjct: 719 NP 720
Score = 66 (28.3 bits), Expect = 5.4e-09, Sum P(4) = 5.4e-09
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 620 GFLGDSRRMNVAITRACKHVAVVCDSSTIC 649
GFL + + +N AITRA VAVV D +C
Sbjct: 1026 GFLSNYKLLNTAITRAQSLVAVVGDPIALC 1055
Score = 40 (19.1 bits), Expect = 5.4e-09, Sum P(4) = 5.4e-09
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 69 CDTICNLFVVSTSTGLGGMHLVLFRVEGNHRL-PPTTLSP 107
CDT L L MH L R++ N L P +++P
Sbjct: 585 CDTQVELQFQLNRLPLCEMHYALDRIKDNGVLFPDISMTP 624
>UNIPROTKB|F1PA16 [details] [associations]
symbol:AQR "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
InterPro:IPR024860 InterPro:IPR026300 PIRSF:PIRSF038901
GO:GO:0000398 OMA:RTKAVGH GO:GO:0071013 GO:GO:0097157
PANTHER:PTHR10887:SF5 GeneTree:ENSGT00700000104467
EMBL:AAEX03016041 Ensembl:ENSCAFT00000013319 Uniprot:F1PA16
Length = 1483
Score = 122 (48.0 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 72/238 (30%), Positives = 106/238 (44%)
Query: 415 KRCILAGDQCQLAPVILSRKALE-GGIGVSLLERAATLHEGVLATKLTTQYRMNDAIAS- 472
KR I+ GD QL PVI + + + SL R + GV L Q R ++ +
Sbjct: 1088 KRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRV--GVPTVDLDAQGRARASLCNL 1145
Query: 473 --WASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHL 530
W K + G+L H+ + P + T LL D +L + E
Sbjct: 1146 YNWRYKNL--GNL-------PHVQL-----LPEFSTANAGLLYDFQL------INVE--- 1182
Query: 531 DLAGTGS------FY-NEGEAEIVVHHVFSLICA-GVSPSAIAVQSPYVAQVQHLRE--- 579
D G G FY N GEAE VV +F +C G I++ + Y Q +R+
Sbjct: 1183 DFQGVGESEPNPYFYQNLGEAEYVVA-LFMYMCLLGYPADKISILTTYNGQKHLIRDIIN 1241
Query: 580 -RLDDLPEAAGV-EVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
R P +V T+D FQG++ D +++S+VR+ AVG L D RR+ VA++RA
Sbjct: 1242 RRCGSNPLIGRPNKVTTVDRFQGQQNDYILLSLVRTR---AVGHLRDVRRLVVAMSRA 1296
Score = 104 (41.7 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
F +Q +AI G+ L ++ GPPGTGKT + +II+ E R L+ P+N A++
Sbjct: 802 FTHTQIEAIRAGMQPG--LTMVVGPPGTGKTDVAVQIISNIYHFPEQRTLIVTPSNPALN 859
Query: 294 NMVEKLSDVGLN---IVRVGN 311
+ EK+ + ++ ++R+G+
Sbjct: 860 QLFEKIMALDIDERHLLRLGH 880
>UNIPROTKB|J3QS41 [details] [associations]
symbol:HELZ "Probable helicase with zinc finger domain"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0008270 GO:GO:0003676 EMBL:AC005544 EMBL:AC007448
HGNC:HGNC:16878 ChiTaRS:HELZ Ensembl:ENST00000580168 Uniprot:J3QS41
Length = 1943
Score = 126 (49.4 bits), Expect = 8.5e-09, Sum P(4) = 8.5e-09
Identities = 57/206 (27%), Positives = 89/206 (43%)
Query: 416 RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATK--LTTQYRMNDAIASW 473
R +LAGD QL+P + S A E + VSLL+R + + L YR ++AI ++
Sbjct: 817 RIVLAGDHMQLSPFVYSEFARERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINY 876
Query: 474 ASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLA 533
S+ Y G L++S +H K + PL R G E +
Sbjct: 877 TSELFYEGKLMASGKQPAH--------KDFY----PLTFFTAR--------G--EDVQEK 914
Query: 534 GTGSFYNEGEAEIVVHHVFSL-----ICAG-VSPSAIAVQSPYVAQVQHLRERLDDLPEA 587
+ +FYN E VV V L + G + +I V +PY QV +R L
Sbjct: 915 NSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRK-KRL 973
Query: 588 AGVEVATIDSFQGREADAVIISMVRS 613
+ V V + + QG++ + +S VR+
Sbjct: 974 SDVNVERVLNVQGKQFRVLFLSTVRT 999
Score = 87 (35.7 bits), Expect = 8.5e-09, Sum P(4) = 8.5e-09
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGE--RVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309
P+LII GP GTGKT L + + +QQ E R+L+ +N+A D ++ D V
Sbjct: 663 PVLII-GPYGTGKTFTLAQAVKHILQQQETSRILICTHSNSAADLYIK---DYLHPYVEA 718
Query: 310 GNP 312
GNP
Sbjct: 719 GNP 721
Score = 66 (28.3 bits), Expect = 8.5e-09, Sum P(4) = 8.5e-09
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 620 GFLGDSRRMNVAITRACKHVAVVCDSSTIC 649
GFL + + +N AITRA VAVV D +C
Sbjct: 1027 GFLSNYKLLNTAITRAQSLVAVVGDPIALC 1056
Score = 40 (19.1 bits), Expect = 8.5e-09, Sum P(4) = 8.5e-09
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 69 CDTICNLFVVSTSTGLGGMHLVLFRVEGNHRL-PPTTLSP 107
CDT L L MH L R++ N L P +++P
Sbjct: 585 CDTQVELQFQLNRLPLCEMHYALDRIKDNGVLFPDISMTP 624
>ZFIN|ZDB-GENE-040426-2419 [details] [associations]
symbol:helz "helicase with zinc finger"
species:7955 "Danio rerio" [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR011539 InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 ZFIN:ZDB-GENE-040426-2419 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0003700 GO:GO:0003676
GO:GO:0004386 eggNOG:COG1112 EMBL:BC066461 IPI:IPI00500029
RefSeq:NP_998431.1 UniGene:Dr.35354 ProteinModelPortal:Q6NYU2
GeneID:406550 KEGG:dre:406550 CTD:9931 HOGENOM:HOG000231202
HOVERGEN:HBG031603 OrthoDB:EOG4NP72K NextBio:20818112
ArrayExpress:Q6NYU2 Uniprot:Q6NYU2
Length = 1860
Score = 116 (45.9 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 55/206 (26%), Positives = 87/206 (42%)
Query: 416 RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATK--LTTQYRMNDAIASW 473
R +LAGD QL+P + S A E + VSLL+R + + L YR ++AI ++
Sbjct: 809 RVVLAGDHMQLSPFVYSEFARERNLHVSLLDRLYEHYPSEYPCRILLCENYRSHEAIINY 868
Query: 474 ASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLA 533
S Y G L++S H K + PL R G E +
Sbjct: 869 TSDLFYEGKLMASGKQPPH--------KDFY----PLTFFTAR--------G--EDVQEK 906
Query: 534 GTGSFYNEGEAEIVVHHVFSL-----ICAG-VSPSAIAVQSPYVAQVQHLRERLDDLPEA 587
+ ++YN E +V V + + G + +I V SPY QV +R L
Sbjct: 907 NSTAYYNNAEVFEIVERVEEMRKKWPVSWGKLEEGSIGVVSPYADQVFRIRAELRK-KRM 965
Query: 588 AGVEVATIDSFQGREADAVIISMVRS 613
+ V V + + QG++ + +S VR+
Sbjct: 966 SEVSVERVLNVQGKQFRVLFLSTVRT 991
Score = 88 (36.0 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 242 AIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLS 300
AI L+ P ++I GP GTGKT L + + ++Q E RVL+ +N+A D ++
Sbjct: 645 AITTPLSINLPPVLIIGPYGTGKTFTLAQAVKHILKQPESRVLICTHSNSAADLYIK--- 701
Query: 301 DVGLNIVRVGNP 312
D V GNP
Sbjct: 702 DYLHPYVEAGNP 713
Score = 66 (28.3 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 620 GFLGDSRRMNVAITRACKHVAVVCDSSTIC 649
GFL + + +N AITRA VAVV D +C
Sbjct: 1019 GFLSNYKLLNTAITRAQSLVAVVGDPIALC 1048
>RGD|1307049 [details] [associations]
symbol:Helz "helicase with zinc finger" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 RGD:1307049
GO:GO:0008270 GO:GO:0003676 CTD:9931 OrthoDB:EOG4NP72K OMA:YRVALLY
GeneTree:ENSGT00550000074391 IPI:IPI00364329 RefSeq:NP_001099318.2
ProteinModelPortal:D4ADZ6 Ensembl:ENSRNOT00000030300 GeneID:287773
KEGG:rno:287773 Uniprot:D4ADZ6
Length = 1964
Score = 126 (49.4 bits), Expect = 2.8e-08, Sum P(4) = 2.8e-08
Identities = 57/206 (27%), Positives = 89/206 (43%)
Query: 416 RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATK--LTTQYRMNDAIASW 473
R +LAGD QL+P + S A E + VSLL+R + + L YR ++AI ++
Sbjct: 817 RIVLAGDHMQLSPFVYSEFARERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINY 876
Query: 474 ASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLA 533
S+ Y G L++S +H K + PL R G E +
Sbjct: 877 TSELFYEGKLMASGKQPAH--------KDFY----PLTFFTAR--------G--EDVQEK 914
Query: 534 GTGSFYNEGEAEIVVHHVFSL-----ICAG-VSPSAIAVQSPYVAQVQHLRERLDDLPEA 587
+ +FYN E VV V L + G + +I V +PY QV +R L
Sbjct: 915 NSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRK-KRL 973
Query: 588 AGVEVATIDSFQGREADAVIISMVRS 613
+ V V + + QG++ + +S VR+
Sbjct: 974 SDVNVERVLNVQGKQFRVLFLSTVRT 999
Score = 82 (33.9 bits), Expect = 2.8e-08, Sum P(4) = 2.8e-08
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGE--RVLVTAPTNAAVD 293
P+LII GP GTGKT L + + +QQ E R+L+ +N+A D
Sbjct: 663 PVLII-GPYGTGKTFTLAQAVKHILQQQETSRILICTHSNSAAD 705
Score = 66 (28.3 bits), Expect = 2.8e-08, Sum P(4) = 2.8e-08
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 620 GFLGDSRRMNVAITRACKHVAVVCDSSTIC 649
GFL + + +N AITRA VAVV D +C
Sbjct: 1027 GFLSNYKLLNTAITRAQSLVAVVGDPVALC 1056
Score = 40 (19.1 bits), Expect = 2.8e-08, Sum P(4) = 2.8e-08
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 69 CDTICNLFVVSTSTGLGGMHLVLFRVEGNHRL-PPTTLSP 107
CDT L L MH L R++ N L P +++P
Sbjct: 585 CDTQVELQFQLNRLPLCEMHYALDRIKDNGVLFPDISMTP 624
>TAIR|locus:2064158 [details] [associations]
symbol:EMB2765 "EMBRYO DEFECTIVE 2765" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR024860 InterPro:IPR026300 PIRSF:PIRSF038901
GO:GO:0005886 GO:GO:0009507 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005681 GO:GO:0000398 eggNOG:COG1112 HOGENOM:HOG000170551
KO:K12874 OMA:RTKAVGH GO:GO:0097157 PANTHER:PTHR10887:SF5
EMBL:AY099864 IPI:IPI00544394 RefSeq:NP_850297.1 UniGene:At.23967
ProteinModelPortal:Q8L5Y4 SMR:Q8L5Y4 STRING:Q8L5Y4 PaxDb:Q8L5Y4
PRIDE:Q8L5Y4 EnsemblPlants:AT2G38770.1 GeneID:818459
KEGG:ath:AT2G38770 TAIR:At2g38770 InParanoid:Q8L5Y4
PhylomeDB:Q8L5Y4 ProtClustDB:CLSN2680117 Genevestigator:Q8L5Y4
Uniprot:Q8L5Y4
Length = 1509
Score = 120 (47.3 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 38/115 (33%), Positives = 63/115 (54%)
Query: 538 FY-NEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDD--LPEA-AGV--E 591
FY N+GEAE +V + G + I++ + Y Q +R+ ++ +P G +
Sbjct: 1258 FYQNQGEAEYIVSVYIYMRLLGYPANKISILTTYNGQKLLIRDVINRRCVPYPFIGPPSK 1317
Query: 592 VATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSS 646
V T+D FQG++ D +++S+VR+ VG L D RR+ VA++RA + V C S
Sbjct: 1318 VTTVDKFQGQQNDFILLSLVRTRF---VGHLRDVRRLVVAMSRARLGLYVFCRRS 1369
Score = 80 (33.2 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ--GERVLVTAPTNAAV 292
F +Q AI G+ L ++ GPPGTGKT +I+ +R L+ +N A+
Sbjct: 866 FTPTQVGAIISGIQPG--LTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIITHSNQAL 923
Query: 293 DNMVEKLSD 301
+++ EK+ +
Sbjct: 924 NDLFEKIME 932
Score = 66 (28.3 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 22/79 (27%), Positives = 38/79 (48%)
Query: 415 KRCILAGDQCQLAPVILSRKALE-GGIGVSLLERAATLHEGVLATKLTTQYRMNDAIA-- 471
KRCIL GD QL PV+ + + + SL R L G+ +L Q R ++A
Sbjct: 1150 KRCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRL--GIPYIELNAQGRARPSLAKL 1207
Query: 472 -SWASKEMYGGSLISSSTV 489
+W +++ S++ + +
Sbjct: 1208 YNWRYRDLGDLSIVKEAPI 1226
>UNIPROTKB|Q8EA89 [details] [associations]
symbol:SO_4019 "P-loop containing nucleoside triphosphate
hydrolase superfamily" species:211586 "Shewanella oneidensis MR-1"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001261 PROSITE:PS00758 GO:GO:0006508
GO:GO:0008237 EMBL:AE014299 GenomeReviews:AE014299_GR
RefSeq:NP_719549.1 ProteinModelPortal:Q8EA89 GeneID:1171647
KEGG:son:SO_4019 PATRIC:23527708 HOGENOM:HOG000221837 OMA:HRPCTSS
ProtClustDB:CLSK907456 Uniprot:Q8EA89
Length = 907
Score = 124 (48.7 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 36/117 (30%), Positives = 59/117 (50%)
Query: 199 AAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQG 258
A + LF D + D E L G++ + +Q +A+ + N L I G
Sbjct: 227 APLQALFADTPPTGINNISASVDTQEAYLPGLLSR----AQIQALKVAAN--HTLGQISG 280
Query: 259 PPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSD---VGLNIVRVGNP 312
PPGTGK+ + + A V +G+ VL+ A T+ AVD + +KL +G +++R G+P
Sbjct: 281 PPGTGKSYTIATVAAEQVLRGKSVLIVAHTDVAVDVIADKLQQQFQLGSSLIRAGSP 337
Score = 90 (36.7 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 36/114 (31%), Positives = 57/114 (50%)
Query: 535 TGSFYNEG----EAEIVVHHVFSLICA---GVSPSAIAVQSPYVAQVQHLRERLDDLPEA 587
TGS ++G EAE ++ + LI + PS+I V S + Q ++L +++ A
Sbjct: 654 TGSRDSKGINAIEAEALIQKLSQLIDEQENALVPSSIGVLSCFRNQAEYLSQQILARFSA 713
Query: 588 AGVE-----VATIDSFQGREADAVIISM-VRSNTLGAVGFLGDSRRMNVAITRA 635
+E +AT FQG E D +++S + +N A +L NVAITRA
Sbjct: 714 QQLERHQLRIATPFGFQGEERDIMLLSFSITANDSRAAVYLNREDMFNVAITRA 767
>TIGR_CMR|SO_4019 [details] [associations]
symbol:SO_4019 "hypothetical protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR001261
PROSITE:PS00758 GO:GO:0006508 GO:GO:0008237 EMBL:AE014299
GenomeReviews:AE014299_GR RefSeq:NP_719549.1
ProteinModelPortal:Q8EA89 GeneID:1171647 KEGG:son:SO_4019
PATRIC:23527708 HOGENOM:HOG000221837 OMA:HRPCTSS
ProtClustDB:CLSK907456 Uniprot:Q8EA89
Length = 907
Score = 124 (48.7 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 36/117 (30%), Positives = 59/117 (50%)
Query: 199 AAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQG 258
A + LF D + D E L G++ + +Q +A+ + N L I G
Sbjct: 227 APLQALFADTPPTGINNISASVDTQEAYLPGLLSR----AQIQALKVAAN--HTLGQISG 280
Query: 259 PPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSD---VGLNIVRVGNP 312
PPGTGK+ + + A V +G+ VL+ A T+ AVD + +KL +G +++R G+P
Sbjct: 281 PPGTGKSYTIATVAAEQVLRGKSVLIVAHTDVAVDVIADKLQQQFQLGSSLIRAGSP 337
Score = 90 (36.7 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 36/114 (31%), Positives = 57/114 (50%)
Query: 535 TGSFYNEG----EAEIVVHHVFSLICA---GVSPSAIAVQSPYVAQVQHLRERLDDLPEA 587
TGS ++G EAE ++ + LI + PS+I V S + Q ++L +++ A
Sbjct: 654 TGSRDSKGINAIEAEALIQKLSQLIDEQENALVPSSIGVLSCFRNQAEYLSQQILARFSA 713
Query: 588 AGVE-----VATIDSFQGREADAVIISM-VRSNTLGAVGFLGDSRRMNVAITRA 635
+E +AT FQG E D +++S + +N A +L NVAITRA
Sbjct: 714 QQLERHQLRIATPFGFQGEERDIMLLSFSITANDSRAAVYLNREDMFNVAITRA 767
>RGD|1306223 [details] [associations]
symbol:Aqr "aquarius homolog (mouse)" species:10116 "Rattus
norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR024860 InterPro:IPR026300 PIRSF:PIRSF038901 RGD:1306223
GO:GO:0005681 GO:GO:0000398 GO:GO:0097157 PANTHER:PTHR10887:SF5
IPI:IPI00389267 ProteinModelPortal:D3ZZP0
Ensembl:ENSRNOT00000011917 UCSC:RGD:1306223 ArrayExpress:D3ZZP0
Uniprot:D3ZZP0
Length = 1353
Score = 123 (48.4 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 72/238 (30%), Positives = 107/238 (44%)
Query: 415 KRCILAGDQCQLAPVILSRKALE-GGIGVSLLERAATLHEGVLATKLTTQYRMNDAIAS- 472
KR I+ GD QL PVI + + + SL R + GV L Q R ++ +
Sbjct: 1089 KRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRV--GVPTVDLDAQGRARASLCNL 1146
Query: 473 --WASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHL 530
W K + G+L H+ + P + T LL D +L + E
Sbjct: 1147 YNWRYKNL--GNL-------PHVQL-----LPEFSTANAGLLYDFQL------INVE--- 1183
Query: 531 DLAGTGS------FY-NEGEAEIVVHHVFSLICA-GVSPSAIAVQSPYVAQVQHLRE--- 579
D G G FY N GEAE VV +F +C G I++ + Y Q +R+
Sbjct: 1184 DFQGVGESEPNPYFYQNLGEAEYVVA-LFMYMCLLGYPADKISILTTYNGQKHLIRDIIN 1242
Query: 580 -RLDDLPEAAGV-EVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
R + P +V T+D FQG++ D +++S+VR+ AVG L D RR+ VA++RA
Sbjct: 1243 RRCGNNPLIGRPNKVTTVDRFQGQQNDYILLSLVRTR---AVGHLRDVRRLVVAMSRA 1297
Score = 93 (37.8 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ--GERVLVTAPTNAAV 292
F +Q +AI G+ L ++ GPPGTGKT + +II+ +R L+ +N A+
Sbjct: 802 FTHTQIEAIRAGMQPG--LTMVVGPPGTGKTDVAVQIISNIYHNFPEQRTLIVTHSNQAL 859
Query: 293 DNMVEKLSDVGLN---IVRVGN 311
+ + EK+ + ++ ++R+G+
Sbjct: 860 NQLFEKIMALDIDERHLLRLGH 881
>ASPGD|ASPL0000064563 [details] [associations]
symbol:AN7014 species:162425 "Emericella nidulans"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0097157
"pre-mRNA intronic binding" evidence=IEA] InterPro:IPR024860
InterPro:IPR026300 PIRSF:PIRSF038901 GO:GO:0005681 EMBL:BN001304
GO:GO:0004386 GO:GO:0000398 HOGENOM:HOG000170551 GO:GO:0097157
PANTHER:PTHR10887:SF5 ProteinModelPortal:C8VC84
EnsemblFungi:CADANIAT00000462 OMA:TIYENEM Uniprot:C8VC84
Length = 1422
Score = 114 (45.2 bits), Expect = 5.2e-08, Sum P(4) = 5.2e-08
Identities = 34/102 (33%), Positives = 55/102 (53%)
Query: 540 NEGEAEIVVHHVFSLI-CAGVSPSAIAVQSPYVAQVQHLRERLD---DLPEAAGVE--VA 593
N GEAE V +F + G S I++ + Y Q +++ L+ G+ V
Sbjct: 1204 NLGEAEYAVA-IFQYMRLLGYPASKISILATYAGQTALIKDVLNHRCSKNTLFGMPKIVT 1262
Query: 594 TIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
T+D +QG + D +I+S+ R+ T VG+L D RR+ VA++RA
Sbjct: 1263 TVDRYQGEQNDYIILSLTRTRT---VGYLRDVRRLTVALSRA 1301
Score = 96 (38.9 bits), Expect = 5.2e-08, Sum P(4) = 5.2e-08
Identities = 28/74 (37%), Positives = 41/74 (55%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ--GERVLVTAPTNAAV 292
F +Q +AIA G L +I GPPGTGKT + +II ER L+ A +N A+
Sbjct: 808 FTPAQIQAIASGTQPG--LTVIVGPPGTGKTDVATQIINNIYHNFPTERTLLVAHSNQAL 865
Query: 293 DNMVEKLSDVGLNI 306
+ + +K+ V L+I
Sbjct: 866 NQLFQKI--VALDI 877
Score = 48 (22.0 bits), Expect = 5.2e-08, Sum P(4) = 5.2e-08
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 152 PTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQK-NGLH 192
PTFS+L S I Q L +TL + C L+ + + LH
Sbjct: 139 PTFSRLSILSFMISAFQSLENTLI-RKECAPLVSISIWHNLH 179
Score = 48 (22.0 bits), Expect = 5.2e-08, Sum P(4) = 5.2e-08
Identities = 20/58 (34%), Positives = 26/58 (44%)
Query: 415 KRCILAGDQCQLAPVILSRKALE-GGIGVSLLERAATLHEGVLATKLTTQYRMNDAIA 471
KR +L GD Q +P+I + + SL R L GV A L Q R +IA
Sbjct: 1093 KRIVLCGDHLQNSPIIQNLAFRQYAHFEQSLFLRLIRL--GVPAITLDQQGRARPSIA 1148
>UNIPROTKB|Q9BYK8 [details] [associations]
symbol:HELZ2 "Helicase with zinc finger domain 2"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0030374 "ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0044255 "cellular lipid
metabolic process" evidence=TAS] [GO:0044281 "small molecule
metabolic process" evidence=TAS] Reactome:REACT_111217
InterPro:IPR001900 InterPro:IPR003593 InterPro:IPR015880
InterPro:IPR026855 Pfam:PF00773 PROSITE:PS00028 PROSITE:PS50157
SMART:SM00355 SMART:SM00382 SMART:SM00955 GO:GO:0005524
Reactome:REACT_111045 GO:GO:0005654 GO:GO:0044281 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0044255
GO:GO:0006351 GO:GO:0003723 GO:GO:0004386 GO:GO:0004540
GO:GO:0030374 eggNOG:COG0557 InterPro:IPR022966 EMBL:AL121829
EMBL:AF517673 EMBL:AB201715 EMBL:AB051556 EMBL:AK074171
EMBL:AK055611 IPI:IPI00249304 IPI:IPI00249305 IPI:IPI00736631
RefSeq:NP_001032412.2 RefSeq:NP_208384.3 UniGene:Hs.517180
ProteinModelPortal:Q9BYK8 IntAct:Q9BYK8 STRING:Q9BYK8
PhosphoSite:Q9BYK8 DMDM:209572784 PaxDb:Q9BYK8 PRIDE:Q9BYK8
GeneID:85441 KEGG:hsa:85441 UCSC:uc002yfl.1 UCSC:uc002yfm.2
CTD:85441 GeneCards:GC20M062189 HGNC:HGNC:30021 HPA:HPA051267
MIM:611265 neXtProt:NX_Q9BYK8 HOGENOM:HOG000231856
HOVERGEN:HBG080465 InParanoid:Q9BYK8 OMA:FRAAHIM PhylomeDB:Q9BYK8
GenomeRNAi:85441 NextBio:76020 ArrayExpress:Q9BYK8 Bgee:Q9BYK8
Genevestigator:Q9BYK8 GermOnline:ENSG00000130589
PANTHER:PTHR10887:SF16 Uniprot:Q9BYK8
Length = 2649
Score = 148 (57.2 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 72/246 (29%), Positives = 112/246 (45%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
++ +L GD QL PV+ + + G+ SL ER HE A L TQYRM++ I ++
Sbjct: 2381 EKVVLLGDHKQLRPVVKNERLQNLGLDRSLFER---YHED--AHMLDTQYRMHEGICAFP 2435
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAG 534
S Y L + + V K + CP++ + SL + +E
Sbjct: 2436 SVAFYKSKLKTWQGLRRPPSVLGHAGKES----CPVIFGHVQGHERSLLVSTDE----GN 2487
Query: 535 TGSFYN-EGEAEIVVHHVFSLICAG--VSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVE 591
S N E AE+V + + G V P IAV +PY AQ + + L AGV
Sbjct: 2488 ENSKANLEEVAEVV--RITKQLTLGRTVEPQDIAVLTPYNAQASEISKALRR-EGIAGVA 2544
Query: 592 VATIDSFQGREADAVIISMVRS---NTLGA----------VGFLGDSRRMNVAITRACKH 638
V++I QG E V++S VR+ + L +GF+ D ++NVA+TRA +
Sbjct: 2545 VSSITKSQGSEWRYVLVSTVRTCAKSDLDQRPTKSWLKKFLGFVVDPNQVNVAVTRAQEG 2604
Query: 639 VAVVCD 644
+ ++ D
Sbjct: 2605 LCLIGD 2610
Score = 105 (42.0 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 65/250 (26%), Positives = 103/250 (41%)
Query: 414 GKRCILAGDQCQLAPVILS---RKALEGGI--GVSLLERAATLHEGVLATKLT--TQYRM 466
G R +LAGD Q+ P + S +A E + + L + T HE ++L YR
Sbjct: 687 GTRLVLAGDHMQVTPRLFSVARARAAEHTLLHRLFLCYQQET-HEVARQSRLVFHENYRC 745
Query: 467 NDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTR-LPYGSLSLG 525
DAI S+ S+ Y VA + P PL+ P +S+
Sbjct: 746 TDAIVSFISRHFY---------VAKGNPIHARGKVPPHPRHYPLMFCHVAGSPDRDMSMA 796
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLP 585
L+LA + + ++ + G I V S + AQV LR+ L
Sbjct: 797 --SWLNLAEIAQVVEKVQE---AYNTWPSCWGGREQRCICVVS-HGAQVSALRQELRRR- 849
Query: 586 EAAGVEVATIDSFQGREADAVIISMVRS-NTL---GAVG--FLGDSRRMNVAITRACKHV 639
+ V V + + GR+ V++S V + +L GA+ F D+R +N +TRA +
Sbjct: 850 DLGQVSVGSFEILPGRQFRVVVLSTVHTCQSLLSPGALAPEFFTDARVLNTVLTRAQSQL 909
Query: 640 AVVCDSSTIC 649
VV D+ +C
Sbjct: 910 VVVGDAVALC 919
Score = 76 (31.8 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 246 GLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
G ++ P L+I GP GTGKT L +++ E +VL+ TN+A D
Sbjct: 532 GDGRRVPPLLIYGPFGTGKTYTLAMASLEVIRRPETKVLICTHTNSAAD 580
Score = 73 (30.8 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKT 265
SQ A+ L K P +IQGPPGTGKT
Sbjct: 2156 SQNVAVREALEK--PFTVIQGPPGTGKT 2181
Score = 46 (21.3 bits), Expect = 0.00040, Sum P(3) = 0.00040
Identities = 22/84 (26%), Positives = 36/84 (42%)
Query: 260 PGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAV 319
P G+ I+ + + ++V+VT + +D + S L R+ + PA
Sbjct: 1063 PWDGELNADDAILRELLDESQKVMVTVGEDGLLDTVARPES---LQQARLYE--NLPPAA 1117
Query: 320 ASKSL-GEIVKSKLASFVAE-FER 341
K L E + + SFV E FER
Sbjct: 1118 LRKLLHAEPERYRHCSFVPETFER 1141
Score = 42 (19.8 bits), Expect = 0.00097, Sum P(3) = 0.00097
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 216 ENDLADWS-EVKLD-GIMGKTFDDSQKKAIALG 246
E D W E+ D I+ + D+SQK + +G
Sbjct: 1058 EADFWPWDGELNADDAILRELLDESQKVMVTVG 1090
Score = 37 (18.1 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 389 AQVVLATNTGAADPLIRRLDTFDLVGKRCILA 420
A+ V+ + GA L RLD+ D C++A
Sbjct: 1461 AEEVIRQHPGAGRELPARLDSVDA----CVVA 1488
>MGI|MGI:1276102 [details] [associations]
symbol:Aqr "aquarius" species:10090 "Mus musculus"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] InterPro:IPR024860
InterPro:IPR026300 PIRSF:PIRSF038901 MGI:MGI:1276102 GO:GO:0000398
CTD:9716 eggNOG:COG1112 HOGENOM:HOG000170551 HOVERGEN:HBG080430
KO:K12874 OMA:RTKAVGH OrthoDB:EOG4ZPDTF GO:GO:0071013 GO:GO:0097157
PANTHER:PTHR10887:SF5 EMBL:AK122310 EMBL:AK145547 EMBL:AK151716
EMBL:BC042479 EMBL:U90333 IPI:IPI00330263 RefSeq:NP_033832.2
UniGene:Mm.2545 ProteinModelPortal:Q8CFQ3 SMR:Q8CFQ3
PhosphoSite:Q8CFQ3 PaxDb:Q8CFQ3 PRIDE:Q8CFQ3
Ensembl:ENSMUST00000043160 GeneID:11834 KEGG:mmu:11834
GeneTree:ENSGT00700000104467 InParanoid:Q8CFQ3 NextBio:279759
Bgee:Q8CFQ3 CleanEx:MM_AQR Genevestigator:Q8CFQ3
GermOnline:ENSMUSG00000040383 Uniprot:Q8CFQ3
Length = 1481
Score = 123 (48.4 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 72/238 (30%), Positives = 107/238 (44%)
Query: 415 KRCILAGDQCQLAPVILSRKALE-GGIGVSLLERAATLHEGVLATKLTTQYRMNDAIAS- 472
KR I+ GD QL PVI + + + SL R + GV L Q R ++ +
Sbjct: 1093 KRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRV--GVPTVDLDAQGRARASLCNL 1150
Query: 473 --WASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHL 530
W K + G+L H+ + P + T LL D +L + E
Sbjct: 1151 YNWRYKNL--GNL-------PHVQL-----LPEFSTANAGLLYDFQL------INVE--- 1187
Query: 531 DLAGTGS------FY-NEGEAEIVVHHVFSLICA-GVSPSAIAVQSPYVAQVQHLRE--- 579
D G G FY N GEAE VV +F +C G I++ + Y Q +R+
Sbjct: 1188 DFQGVGESEPNPYFYQNLGEAEYVVA-LFMYMCLLGYPADKISILTTYNGQKHLIRDIIN 1246
Query: 580 -RLDDLPEAAGV-EVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
R + P +V T+D FQG++ D +++S+VR+ AVG L D RR+ VA++RA
Sbjct: 1247 RRCGNNPLIGRPNKVTTVDRFQGQQNDYILLSLVRTR---AVGHLRDVRRLVVAMSRA 1301
Score = 93 (37.8 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ--GERVLVTAPTNAAV 292
F +Q +AI G+ L ++ GPPGTGKT + +II+ +R L+ +N A+
Sbjct: 802 FTHTQIEAIRAGMQPG--LTMVVGPPGTGKTDVAVQIISNIYHNFPEQRTLIVTHSNQAL 859
Query: 293 DNMVEKLSDVGLN---IVRVGN 311
+ + EK+ + ++ ++R+G+
Sbjct: 860 NQLFEKIMALDIDERHLLRLGH 881
>UNIPROTKB|O60306 [details] [associations]
symbol:AQR "Intron-binding protein aquarius" species:9606
"Homo sapiens" [GO:0097157 "pre-mRNA intronic binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] InterPro:IPR024860 InterPro:IPR026300
PIRSF:PIRSF038901 GO:GO:0000398 EMBL:AB011132 EMBL:EF553519
EMBL:BC036913 EMBL:BC070379 EMBL:BC108262 EMBL:BC127111
EMBL:BC127112 IPI:IPI00796835 PIR:T00333 RefSeq:NP_055506.1
UniGene:Hs.510958 ProteinModelPortal:O60306 SMR:O60306
IntAct:O60306 STRING:O60306 PhosphoSite:O60306 PaxDb:O60306
PRIDE:O60306 Ensembl:ENST00000156471 GeneID:9716 KEGG:hsa:9716
UCSC:uc001ziv.3 CTD:9716 GeneCards:GC15M035147 HGNC:HGNC:29513
MIM:610548 neXtProt:NX_O60306 PharmGKB:PA134869224 eggNOG:COG1112
HOGENOM:HOG000170551 HOVERGEN:HBG080430 InParanoid:O60306 KO:K12874
OMA:RTKAVGH OrthoDB:EOG4ZPDTF ChiTaRS:AQR GenomeRNAi:9716
NextBio:36525 Bgee:O60306 CleanEx:HS_AQR Genevestigator:O60306
GermOnline:ENSG00000021776 GO:GO:0071013 GO:GO:0097157
PANTHER:PTHR10887:SF5 Uniprot:O60306
Length = 1485
Score = 123 (48.4 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 72/238 (30%), Positives = 107/238 (44%)
Query: 415 KRCILAGDQCQLAPVILSRKALE-GGIGVSLLERAATLHEGVLATKLTTQYRMNDAIAS- 472
KR I+ GD QL PVI + + + SL R + GV L Q R ++ +
Sbjct: 1089 KRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRV--GVPTVDLDAQGRARASLCNL 1146
Query: 473 --WASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHL 530
W K + G+L H+ + P + T LL D +L + E
Sbjct: 1147 YNWRYKNL--GNL-------PHVQL-----LPEFSTANAGLLYDFQL------INVE--- 1183
Query: 531 DLAGTGS------FY-NEGEAEIVVHHVFSLICA-GVSPSAIAVQSPYVAQVQHLRE--- 579
D G G FY N GEAE VV +F +C G I++ + Y Q +R+
Sbjct: 1184 DFQGVGESEPNPYFYQNLGEAEYVVA-LFMYMCLLGYPADKISILTTYNGQKHLIRDIIN 1242
Query: 580 -RLDDLPEAAGV-EVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
R + P +V T+D FQG++ D +++S+VR+ AVG L D RR+ VA++RA
Sbjct: 1243 RRCGNNPLIGRPNKVTTVDRFQGQQNDYILLSLVRTR---AVGHLRDVRRLVVAMSRA 1297
Score = 93 (37.8 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ--GERVLVTAPTNAAV 292
F +Q +AI G+ L ++ GPPGTGKT + +II+ +R L+ +N A+
Sbjct: 802 FTHTQIEAIRAGMQPG--LTMVVGPPGTGKTDVAVQIISNIYHNFPEQRTLIVTHSNQAL 859
Query: 293 DNMVEKLSDVGLN---IVRVGN 311
+ + EK+ + ++ ++R+G+
Sbjct: 860 NQLFEKIMALDIDERHLLRLGH 881
>UNIPROTKB|F1MUW2 [details] [associations]
symbol:F1MUW2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] InterPro:IPR024860
InterPro:IPR026300 PIRSF:PIRSF038901 GO:GO:0000398 OMA:RTKAVGH
GO:GO:0071013 GO:GO:0097157 PANTHER:PTHR10887:SF5
GeneTree:ENSGT00700000104467 EMBL:DAAA02028420 EMBL:DAAA02028416
EMBL:DAAA02028417 EMBL:DAAA02028418 EMBL:DAAA02028419
IPI:IPI00852511 Ensembl:ENSBTAT00000016895 Uniprot:F1MUW2
Length = 1466
Score = 121 (47.7 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 39/105 (37%), Positives = 58/105 (55%)
Query: 538 FY-NEGEAEIVVHHVFSLICA-GVSPSAIAVQSPYVAQVQHLRE----RLDDLPEAAGV- 590
FY N GEAE VV +F +C G I++ + Y Q +R+ R P
Sbjct: 1179 FYQNLGEAEYVVA-LFMYMCLLGYPADKISILTTYNGQKHLIRDIINRRCGSNPLIGRPN 1237
Query: 591 EVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
+V T+D FQG++ D +++S+VR+ AVG L D RR+ VA++RA
Sbjct: 1238 KVTTVDRFQGQQNDYILLSLVRTR---AVGHLRDVRRLVVAMSRA 1279
Score = 93 (37.8 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ--GERVLVTAPTNAAV 292
F +Q +AI G+ L ++ GPPGTGKT + +II+ +R L+ +N A+
Sbjct: 785 FTHTQIEAIRAGMQPG--LTMVVGPPGTGKTDVAVQIISNIYHNFPEQRTLIVTHSNQAL 842
Query: 293 DNMVEKLSDVGLN---IVRVGN 311
+ + EK+ + ++ ++R+G+
Sbjct: 843 NQLFEKIMALDIDERHLLRLGH 864
>FB|FBgn0051368 [details] [associations]
symbol:CG31368 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA;IC]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] InterPro:IPR024860
InterPro:IPR026300 PIRSF:PIRSF038901 EMBL:AE014297 GO:GO:0016787
GO:GO:0071011 GO:GO:0000398 eggNOG:COG1112 KO:K12874 OMA:RTKAVGH
GO:GO:0071013 GO:GO:0097157 PANTHER:PTHR10887:SF5
GeneTree:ENSGT00700000104467 RefSeq:NP_996198.2 UniGene:Dm.10009
ProteinModelPortal:Q7KSN8 SMR:Q7KSN8 PaxDb:Q7KSN8
EnsemblMetazoa:FBtr0301042 GeneID:41437 KEGG:dme:Dmel_CG31368
UCSC:CG31368-RB FlyBase:FBgn0051368 InParanoid:Q7KSN8
OrthoDB:EOG43XSJ9 PhylomeDB:Q7KSN8 GenomeRNAi:41437 NextBio:823855
ArrayExpress:Q7KSN8 Bgee:Q7KSN8 Uniprot:Q7KSN8
Length = 1486
Score = 110 (43.8 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 34/104 (32%), Positives = 56/104 (53%)
Query: 538 FY-NEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRE----RLDDLPEAAGV-E 591
FY N EAE +V + G + I++ + Y Q +R+ R + P +
Sbjct: 1213 FYQNLAEAEYIVAVYMYMRLLGYPAAKISILTTYNGQKHLIRDVINARCGNNPLIGWPHK 1272
Query: 592 VATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
+ T+D +QG++ D ++IS+VR+ AVG L D RR+ VA++RA
Sbjct: 1273 ITTVDKYQGQQNDYILISLVRTK---AVGHLRDVRRLVVAMSRA 1313
Score = 97 (39.2 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ--GERVLVTAPTNAAV 292
F +Q +AI G+ L ++ GPPGTGKT + +II+ +R L+ +N A+
Sbjct: 815 FTPTQVEAIRAGMQPG--LTLVVGPPGTGKTDVAVQIISNIYHNHPNQRTLIVTHSNQAL 872
Query: 293 DNMVEKLSDVGLN---IVRVGN 311
+ + EK+ + ++ ++R+G+
Sbjct: 873 NQLFEKIMALDIDERHLLRLGH 894
Score = 53 (23.7 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 23/68 (33%), Positives = 30/68 (44%)
Query: 415 KRCILAGDQCQLAPVILSRKALE-GGIGVSLLERAATLHEGVLATKLTTQYRMNDAIAS- 472
KR I+ GD QL PVI + + + SL R L GV L Q R +I S
Sbjct: 1105 KRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRLVRL--GVPTVDLDGQGRARASICSL 1162
Query: 473 --WASKEM 478
W K++
Sbjct: 1163 YKWRYKKL 1170
>UNIPROTKB|E2RBM4 [details] [associations]
symbol:PRIC285 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001900 InterPro:IPR003593
InterPro:IPR026855 Pfam:PF00773 PROSITE:PS50103 SMART:SM00382
SMART:SM00955 GO:GO:0005524 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0004540 InterPro:IPR022966 PROSITE:PS01175
PANTHER:PTHR10887:SF16 GeneTree:ENSGT00550000074391
EMBL:AAEX03014158 Ensembl:ENSCAFT00000020582 OMA:RCQYAHS
Uniprot:E2RBM4
Length = 2919
Score = 147 (56.8 bits), Expect = 2.9e-07, Sum P(3) = 2.9e-07
Identities = 71/245 (28%), Positives = 110/245 (44%)
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
++ +L GD QL PV+ + + G+ SL ER H V A L TQYRM++ I ++
Sbjct: 2651 EKVVLLGDHKQLRPVVKNEQLQNLGLDRSLFER---YH--VDAHMLDTQYRMHEGICAFP 2705
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAG 534
S E Y L + + + K + C ++ + SL + +E
Sbjct: 2706 SMEFYEKKLKTWQGLRRPPSILGHIGKES----CSVIFGHVQGHEQSLLVSTDE----GN 2757
Query: 535 TGSFYNEGEAEIVVHHVFSLICAG-VSPSAIAVQSPYVAQVQHLRERLDDLPEA-AGVEV 592
S N E VV L V P +A+ +PY AQ + +RL + E +GV V
Sbjct: 2758 ENSKANPEEVAAVVRIAKQLTLGRTVEPKDVAILTPYNAQAAEISKRL--VREGVSGVTV 2815
Query: 593 ATIDSFQGREADAVIISMVRS---NTLGA----------VGFLGDSRRMNVAITRACKHV 639
+I QG E V++S VR+ + L +GF+ D ++NVAITRA + +
Sbjct: 2816 CSITKSQGSEWRYVLVSTVRTCQESDLDQRPTKSWLKRFLGFVVDPNQVNVAITRAREGL 2875
Query: 640 AVVCD 644
V+ D
Sbjct: 2876 CVIGD 2880
Score = 122 (48.0 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 79/279 (28%), Positives = 114/279 (40%)
Query: 414 GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERA-----ATLHEGVLATKLT--TQYRM 466
G R +LAGD Q+ P + S + G +LL R HE ++L YR
Sbjct: 934 GTRVVLAGDHMQVTPRLFSVPRAQAA-GHTLLYRLFQHYQREAHEVAQRSRLIFHQNYRS 992
Query: 467 NDAIASWASKEMY---GGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLS 523
+AI S+ S+ Y G + +S V H P + P C +
Sbjct: 993 TEAILSFVSRHFYVAKGSPIHASGRVPPH-----PRLHPLMF--CHVA------------ 1033
Query: 524 LGCEEHLDLAGTGSFYNEGEAEIVVHHVFSL-----ICAGVSPSA-IAVQSPYVAQVQHL 577
G E DL+ T S+ N E VV V L C G I V S + AQV L
Sbjct: 1034 -GNPER-DLSST-SWLNAAEVAQVVEQVRDLHDGWPSCWGAREQKHICVVS-HGAQVTAL 1089
Query: 578 RERLDDLPEAAGVEVATIDSFQGREADAVIISMVR------SNTLGAVGFLGDSRRMNVA 631
R+ L V V + + GRE V++S V S+ ++GF D+R +N
Sbjct: 1090 RQELRKR-NLGQVSVGSFEILPGREFRVVVLSTVHNHHSLLSSGTASLGFFTDARVLNTI 1148
Query: 632 ITRACKHVAVVCDSSTICHNTFLARLLRH-IRYFGRVKH 669
+TRA V V ++ +C + ++L + IR VKH
Sbjct: 1149 MTRAQSQVVAVGNALALCSSGACSKLWKSFIREC--VKH 1185
Score = 79 (32.9 bits), Expect = 2.9e-07, Sum P(3) = 2.9e-07
Identities = 25/67 (37%), Positives = 37/67 (55%)
Query: 239 QKKAIAL--GLNK--KRPL--LIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAA 291
QK A+A G + +RP+ L+I GP GTGKT L ++Q +VL+ TN+A
Sbjct: 766 QKLAVAFIAGSSPGGRRPIAPLLIYGPFGTGKTYTLAMASLEVIRQPHTKVLICTHTNSA 825
Query: 292 VDNMVEK 298
D +E+
Sbjct: 826 ADIYIEE 832
Score = 78 (32.5 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEII 272
T + SQ +A+ L K+ +IQGPPGTGKT + I+
Sbjct: 2422 TLNRSQNRAVRAALKKQ--FTVIQGPPGTGKTVVAFHIV 2458
Score = 38 (18.4 bits), Expect = 2.9e-07, Sum P(3) = 2.9e-07
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 98 HRLPPTTLSPGDMVCVR--VCDSRGAC 122
HR PPT LS ++ C +C+ C
Sbjct: 325 HRSPPTGLSTFEL-CPNPSLCEYGDIC 350
Score = 38 (18.4 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 104 TLSPGDMVCVRVCDSRGAC 122
T++PG +C+ + G+C
Sbjct: 2138 TVAPGFTLCLEHVERLGSC 2156
>UNIPROTKB|F1NPB8 [details] [associations]
symbol:AQR "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR024860
InterPro:IPR026300 PIRSF:PIRSF038901 GO:GO:0000398 OMA:RTKAVGH
GO:GO:0071013 GO:GO:0097157 PANTHER:PTHR10887:SF5
GeneTree:ENSGT00700000104467 EMBL:AADN02003289 EMBL:AADN02003288
IPI:IPI00597734 Ensembl:ENSGALT00000015995 Uniprot:F1NPB8
Length = 1416
Score = 116 (45.9 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 40/106 (37%), Positives = 59/106 (55%)
Query: 538 FY-NEGEAEIVVHHVFSLICA-GVSPSAIAVQSPYVAQVQHLRE----RLDDLPEAAGV- 590
FY N GEAE VV VF +C G I++ + Y Q +R+ R + P
Sbjct: 1206 FYQNLGEAEYVVA-VFMYMCLLGYPADRISILTTYNGQKHLIRDVINQRCGNNPLIGRPN 1264
Query: 591 EVATIDSFQGREADAVIISMVRSNTLGAVGFLG-DSRRMNVAITRA 635
+V T+D FQG++ D +++S+VR+ AVG L D RR+ VA++RA
Sbjct: 1265 KVTTVDRFQGQQNDYILLSLVRTK---AVGHLRRDVRRLVVAMSRA 1307
Score = 93 (37.8 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ--GERVLVTAPTNAAV 292
F +Q +AI G+ L ++ GPPGTGKT + +II+ +R L+ +N A+
Sbjct: 811 FTHTQIEAIRAGMQPG--LTMVVGPPGTGKTDVAVQIISNLYHNFPEQRTLIVTHSNQAL 868
Query: 293 DNMVEKLSDVGLN---IVRVGN 311
+ + EK+ + ++ ++R+G+
Sbjct: 869 NQLFEKIMALDIDERHLLRLGH 890
>WB|WBGene00001258 [details] [associations]
symbol:emb-4 species:6239 "Caenorhabditis elegans"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0097157
"pre-mRNA intronic binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0010171 "body morphogenesis" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] InterPro:IPR024860 InterPro:IPR026300
PIRSF:PIRSF038901 GO:GO:0009792 GO:GO:0040010 GO:GO:0010171
GO:GO:0040011 GO:GO:0005681 GO:GO:0000398 eggNOG:COG1112
HOGENOM:HOG000170551 KO:K12874 OMA:RTKAVGH GO:GO:0097157
PANTHER:PTHR10887:SF5 GeneTree:ENSGT00700000104467 EMBL:AL132853
GeneID:180232 KEGG:cel:CELE_Y80D3A.2 CTD:180232
RefSeq:NP_001256831.1 ProteinModelPortal:Q9U1Q7 SMR:Q9U1Q7
PaxDb:Q9U1Q7 PRIDE:Q9U1Q7 EnsemblMetazoa:Y80D3A.2a.1
EnsemblMetazoa:Y80D3A.2a.2 UCSC:Y80D3A.2.1 WormBase:Y80D3A.2a
InParanoid:Q9U1Q7 NextBio:908508 ArrayExpress:Q9U1Q7 Uniprot:Q9U1Q7
Length = 1467
Score = 112 (44.5 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 33/104 (31%), Positives = 56/104 (53%)
Query: 538 FY-NEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRE---RLDDLPEAAGV--E 591
FY N GEAE + G I++ + Y Q Q +R+ R D G+ +
Sbjct: 1199 FYQNLGEAEYACALYTYMRILGYPAEKISILTTYNGQAQLIRDVFQRRCDTNPLIGMPAK 1258
Query: 592 VATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
V+T+D +QG++ D +I+S+V++ +G + D RR+ VA++RA
Sbjct: 1259 VSTVDKYQGQQNDFIILSLVKTRN---IGHIRDVRRLVVALSRA 1299
Score = 97 (39.2 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 27/82 (32%), Positives = 46/82 (56%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ--GERVLVTAPTNAAV 292
F SQ +AI G+ L ++ GPPGTGKT + +II+ +R L+ +N A+
Sbjct: 806 FTPSQVEAIKSGMQPG--LTMVVGPPGTGKTDVAVQIISNIYHNWPNQRTLIVTHSNQAL 863
Query: 293 DNMVEKLS--DVG-LNIVRVGN 311
+ + EK+ DV +++R+G+
Sbjct: 864 NQLFEKIIALDVDERHLLRMGH 885
>ZFIN|ZDB-GENE-040426-1189 [details] [associations]
symbol:aqr "aquarius homolog (mouse)" species:7955
"Danio rerio" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] InterPro:IPR024860
InterPro:IPR026300 PIRSF:PIRSF038901 ZFIN:ZDB-GENE-040426-1189
GO:GO:0005681 GO:GO:0000398 CTD:9716 HOGENOM:HOG000170551
HOVERGEN:HBG080430 KO:K12874 GO:GO:0097157 PANTHER:PTHR10887:SF5
EMBL:BC160661 IPI:IPI00861759 RefSeq:NP_956758.2 UniGene:Dr.17308
ProteinModelPortal:B1H1M2 DNASU:393436 GeneID:393436
KEGG:dre:393436 eggNOG:NOG272077 NextBio:20814473
ArrayExpress:B1H1M2 Uniprot:B1H1M2
Length = 1525
Score = 112 (44.5 bits), Expect = 5.5e-07, Sum P(3) = 5.5e-07
Identities = 67/237 (28%), Positives = 100/237 (42%)
Query: 415 KRCILAGDQCQLAPVILSRKALE-GGIGVSLLERAATLHEGVLATKLTTQYRMNDAIAS- 472
KR I+ GD QL PVI + + + SL R L GV L Q R ++ +
Sbjct: 1088 KRWIMIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRL--GVPTVDLDAQGRARASLCNL 1145
Query: 473 --WASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHL 530
W K++ G+L H+ + F P P D +L + E
Sbjct: 1146 YNWRYKQL--GNL-------PHVQLQPEFRTPN-----PGFTFDFQL------INVE--- 1182
Query: 531 DLAGTGS------FY-NEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDD 583
D G G FY N EAE V + G I++ + Y Q +R+ +
Sbjct: 1183 DFNGVGESEPNPYFYQNLAEAEYSVALYMYMRLLGYPAERISILTTYNGQKHLIRDVIHQ 1242
Query: 584 LPEAAGV-----EVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
+ +V T+D FQG++ D +I+S+VR+ AVG L D RR+ VA++RA
Sbjct: 1243 RCASNSFFGQPSKVTTVDRFQGQQNDYIILSLVRTK---AVGHLRDVRRLVVAMSRA 1296
Score = 94 (38.1 bits), Expect = 5.5e-07, Sum P(3) = 5.5e-07
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ--GERVLVTAPTNAAV 292
F +Q +AI G+ L ++ GPPGTGKT + +II+ +R L+ +N A+
Sbjct: 801 FTPTQIEAIRAGMQPG--LTMVVGPPGTGKTNVAVQIISNLYHNFPEQRTLIVTHSNQAL 858
Query: 293 DNMVEKLSDVGLN---IVRVGN 311
+ + EK+ + ++ ++R+G+
Sbjct: 859 NQLFEKIMALDIDERHLLRLGH 880
Score = 48 (22.0 bits), Expect = 5.5e-07, Sum P(3) = 5.5e-07
Identities = 19/59 (32%), Positives = 23/59 (38%)
Query: 163 RIDRIQGLADT--LTYERNCEALMLLQKNG-LHKRNPSIAAVVTLFGDKEDV-TWLEEN 217
R DR Q D L Y R CE +L G + + P L GD WL+ N
Sbjct: 576 RFDRRQPFVDQAGLVYVRGCEVQGMLDDQGRVIEEGPDPKP--KLRGDTRTYRVWLDSN 632
>UNIPROTKB|F1MKC7 [details] [associations]
symbol:Bt.110099 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR011990 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0008270 GO:GO:0003676 Gene3D:1.25.40.10 OMA:YRVALLY
GeneTree:ENSGT00550000074391 EMBL:DAAA02049790 EMBL:DAAA02049791
EMBL:DAAA02049792 EMBL:DAAA02049793 EMBL:DAAA02049794
EMBL:DAAA02049795 EMBL:DAAA02049796 EMBL:DAAA02049797
EMBL:DAAA02049798 EMBL:DAAA02049799 IPI:IPI00698970
Ensembl:ENSBTAT00000006233 Uniprot:F1MKC7
Length = 1941
Score = 126 (49.4 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 57/206 (27%), Positives = 89/206 (43%)
Query: 416 RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATK--LTTQYRMNDAIASW 473
R +LAGD QL+P + S A E + VSLL+R + + L YR ++AI ++
Sbjct: 821 RVVLAGDHMQLSPFVYSEFARERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINY 880
Query: 474 ASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLA 533
S+ Y G L++S +H K + PL R G E +
Sbjct: 881 TSELFYEGKLMASGKQPAH--------KEFY----PLTFFTAR--------G--EDVQEK 918
Query: 534 GTGSFYNEGEAEIVVHHVFSL-----ICAG-VSPSAIAVQSPYVAQVQHLRERLDDLPEA 587
+ +FYN E VV V L + G + +I V +PY QV +R L
Sbjct: 919 NSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRK-KRL 977
Query: 588 AGVEVATIDSFQGREADAVIISMVRS 613
+ V V + + QG++ + +S VR+
Sbjct: 978 SDVNVERVLNVQGKQFRVLFLSTVRT 1003
Score = 66 (28.3 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 620 GFLGDSRRMNVAITRACKHVAVVCDSSTIC 649
GFL + + +N AITRA VAVV D +C
Sbjct: 1031 GFLSNYKLLNTAITRAQSLVAVVGDPIALC 1060
>UNIPROTKB|Q887E7 [details] [associations]
symbol:PSPTO_1349 "Uncharacterized protein" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:AE016853 GenomeReviews:AE016853_GR eggNOG:COG1112
InterPro:IPR008893 Pfam:PF05406 SMART:SM00773 SUPFAM:SSF142921
Gene3D:2.20.140.10 RefSeq:NP_791176.1 ProteinModelPortal:Q887E7
GeneID:1182985 KEGG:pst:PSPTO_1349 PATRIC:19993940
HOGENOM:HOG000107590 OMA:AFLRWHN ProtClustDB:CLSK522710
BioCyc:PSYR223283:GJIX-1374-MONOMER InterPro:IPR025103 Pfam:PF13195
Uniprot:Q887E7
Length = 1822
Score = 106 (42.4 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNM 295
D +Q A++L + IIQGPPGTGK+ + +IA +G RVL AA+D +
Sbjct: 625 DATQNAAVSLARTGRN--FIIQGPPGTGKSQTITNLIADYAGRGLRVLFVCEKRAALDVV 682
Query: 296 VEKLSDVGL 304
+L GL
Sbjct: 683 FHRLQQSGL 691
Score = 81 (33.6 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 29/101 (28%), Positives = 47/101 (46%)
Query: 582 DDLPEAAGVEVATIDSFQGREADAVIISMVRS---N-----TLGAVGFLGDSRRMNVAIT 633
+D + G+ V +++ QG E D +I+S+ + N G + G +R+NV +
Sbjct: 1491 EDAGQFNGLFVKNLENVQGDERDVIILSICYAPGPNGKMLMNFGPINQRGGEKRLNVIFS 1550
Query: 634 RACKHVAVV----CDSSTICHNTFLARLLRHIRYFGRVKHA 670
RA K +A++ D+ T HN A L R F R A
Sbjct: 1551 RARKRMAIISSIEADAITNTHNDGAAAL-RAFLQFARASAA 1590
Score = 46 (21.3 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 23/86 (26%), Positives = 41/86 (47%)
Query: 415 KRCILAGDQCQLAPV-ILSRK---------ALEGGIGVSL-LERAATLHEGVL---ATKL 460
++ I+ GD+ QL P S A+E G +++ L+ + L + AT L
Sbjct: 1294 QQVIVVGDEMQLPPTNFFSSAGDQQDNELIAMEDGEQIAINLDADSLLSQAARNLPATLL 1353
Query: 461 TTQYRM-NDAIASWASKEMYGGSLIS 485
YR ++A+ S+++ Y G LI+
Sbjct: 1354 AWHYRSRHEALISFSNAAFYEGRLIT 1379
>ZFIN|ZDB-GENE-050508-3 [details] [associations]
symbol:zgc:113057 "zgc:113057" species:7955 "Danio
rerio" [GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR026855 ZFIN:ZDB-GENE-050508-3
GO:GO:0004386 eggNOG:COG1112 PANTHER:PTHR10887:SF16 IPI:IPI00492493
EMBL:BC094297 RefSeq:NP_001018332.1 UniGene:Dr.115608
ProteinModelPortal:Q52KK8 GeneID:552926 KEGG:dre:552926
HOGENOM:HOG000007768 InParanoid:Q52KK8 NextBio:20879878
Uniprot:Q52KK8
Length = 231
Score = 119 (46.9 bits), Expect = 0.00019, P = 0.00019
Identities = 45/134 (33%), Positives = 66/134 (49%)
Query: 557 AGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRS-NT 615
+GVSP IA+ +PY AQV ++ L+ V V T+ QG E VI+S VRS +T
Sbjct: 68 SGVSPEHIAILTPYNAQVSEIKMTLEK-KNVRNVTVCTVMKSQGSEWPYVIVSTVRSCST 126
Query: 616 --------------LGA-VGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRH 660
LG +GF+ D+ ++NVAITRA + ++ +S + RLL H
Sbjct: 127 SDIQAYRVRPHKAWLGKRLGFVTDANQVNVAITRAQDGLCILGNSDLLRCCELWDRLLDH 186
Query: 661 IRYFGRVKHAEPGS 674
Y+ + P S
Sbjct: 187 --YYRKSCVVNPAS 198
>UNIPROTKB|F1SUI6 [details] [associations]
symbol:DNA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043142 "single-stranded DNA-dependent ATPase activity"
evidence=IEA] [GO:0033567 "DNA replication, Okazaki fragment
processing" evidence=IEA] [GO:0017108 "5'-flap endonuclease
activity" evidence=IEA] InterPro:IPR026851 GO:GO:0017108
GO:GO:0043142 GO:GO:0033567 PANTHER:PTHR10887:SF14
GeneTree:ENSGT00550000074852 EMBL:CU468421
Ensembl:ENSSSCT00000011207 Uniprot:F1SUI6
Length = 395
Score = 123 (48.4 bits), Expect = 0.00023, P = 0.00023
Identities = 34/108 (31%), Positives = 58/108 (53%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAV 292
K + Q++A+ L K LI+ G PGTGKT + ++ G VL+T+ T++AV
Sbjct: 284 KGLNKPQRQAMKKVLLSKDYTLIV-GMPGTGKTTTICTLVRILYACGFSVLLTSYTHSAV 342
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFE 340
DN++ KL+ + +R+G ++ P + + EI +SK +A E
Sbjct: 343 DNILLKLAKFKIGFLRLGQTQKVHPDIQKFTEEEICRSKSIKSLALLE 390
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.392 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 690 668 0.00099 120 3 11 22 0.39 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 171
No. of states in DFA: 618 (66 KB)
Total size of DFA: 330 KB (2166 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 56.46u 0.17s 56.63t Elapsed: 00:00:03
Total cpu time: 56.50u 0.17s 56.67t Elapsed: 00:00:03
Start: Mon May 20 22:55:12 2013 End: Mon May 20 22:55:15 2013
WARNINGS ISSUED: 1